A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

A

a - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The current interval

a - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The current interval

a00 - Variable in class ome.xml.model.AffineTransform

a01 - Variable in class ome.xml.model.AffineTransform

a02 - Variable in class ome.xml.model.AffineTransform

a10 - Variable in class ome.xml.model.AffineTransform

a11 - Variable in class ome.xml.model.AffineTransform

a12 - Variable in class ome.xml.model.AffineTransform

A4_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

A5_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

abort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

Abort(String) - Method in class loci.poi.hssf.model.FormulaParser

Report Error and Halt

abortable - Variable in class loci.poi.hssf.eventmodel.EventRecordFactory

instance is abortable or not

abortable - Variable in class loci.poi.hssf.eventmodel.ListenerWrapper

AbortableHSSFListener - Class in loci.poi.hssf.eventusermodel

Interface for use with the HSSFRequest and HSSFEventFactory.

AbortableHSSFListener() - Constructor for class loci.poi.hssf.eventusermodel.AbortableHSSFListener

abortableProcessEvents(HSSFRequest, InputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a DocumentInputStream into essentially Record events.

abortableProcessRecord(Record) - Method in class loci.poi.hssf.eventusermodel.AbortableHSSFListener

Process an HSSF Record.

abortableProcessWorkbookEvents(HSSFRequest, POIFSFileSystem) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a file into essentially record events.

About - Class in loci.plugins

Displays a small information dialog about the Bio-Formats Plugins package.

About() - Constructor for class loci.plugins.About

about() - Static method in class loci.plugins.About

abs() - Method in class loci.plugins.util.RecordedImageProcessor

absoluteDay(Calendar) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a Calendar, return the number of days since 1900/12/31.

absoluteTime - Variable in class loci.formats.in.PrairieMetadata.Frame

absoluteTime attribute of this <Frame>.

AbstractEscherHolderRecord - Class in loci.poi.hssf.record

The escher container record is used to hold escher records.

AbstractEscherHolderRecord() - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord

AbstractEscherHolderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord

Constructs a Bar record and sets its fields appropriately.

AbstractFunctionPtg - Class in loci.poi.hssf.record.formula

This class provides the base functionality for Excel sheet functions There are two kinds of function Ptgs - tFunc and tFuncVar Therefore, this class will have ONLY two subclasses

AbstractFunctionPtg() - Constructor for class loci.poi.hssf.record.formula.AbstractFunctionPtg

AbstractNIOHandle - Class in loci.common

A wrapper for buffered NIO logic that implements the IRandomAccess interface.

AbstractNIOHandle() - Constructor for class loci.common.AbstractNIOHandle

AbstractOMEModelObject - Class in ome.xml.model

AbstractOMEModelObject() - Constructor for class ome.xml.model.AbstractOMEModelObject

AbstractOMEXMLMetadata - Class in loci.formats.ome

AbstractOMEXMLMetadata() - Constructor for class loci.formats.ome.AbstractOMEXMLMetadata

AbstractOMEXMLMetadata - Class in ome.xml.meta

A utility class for constructing and manipulating OME-XML DOMs.

AbstractOMEXMLMetadata() - Constructor for class ome.xml.meta.AbstractOMEXMLMetadata

Creates a new OME-XML metadata object.

AbstractService - Class in loci.common.services

AbstractService() - Constructor for class loci.common.services.AbstractService

AbstractShape - Class in loci.poi.hssf.model

An abstract shape is the lowlevel model for a shape.

AbstractShape() - Constructor for class loci.poi.hssf.model.AbstractShape

ac - Variable in class loci.formats.in.FakeReader

Channel of last opened image plane.

accept(File) - Method in class loci.formats.gui.ComboFileFilter

Accepts files with the proper filename prefix.

accept(File) - Method in class loci.formats.gui.ExtensionFileFilter

Accepts files with the proper extensions.

accept(File) - Method in class loci.formats.gui.FormatFileFilter

Accepts files in accordance with the file format reader.

accept(File) - Method in class loci.formats.gui.NoExtensionFileFilter

Accepts files with no extension.

accept(String) - Method in class loci.formats.NumberFilter

Tests if a specified file should be included in a file list.

accept(File) - Method in class loci.formats.NumberFilter

Tests if a specified file should be included in a file list.

ACCESS_TIME - Static variable in class loci.tests.testng.Configuration

accumulate - Variable in class loci.formats.in.SDTInfo

ACCUMULATION - Static variable in class loci.formats.in.CellSensReader

ACCUMULATION_MODE - Static variable in class loci.formats.in.CellSensReader

acquire - Variable in class loci.formats.in.ZeissLSMReader.SubBlock

acquiredDate - Variable in class loci.formats.in.LIFReader

acquiredDate - Variable in class loci.formats.in.ZeissCZIReader

acquiredDate - Variable in class loci.formats.in.ZeissLSMReader

ACQUISITION_CYCLE_TIME - Static variable in class loci.formats.in.FluoviewReader

ACQUISITION_FILE - Static variable in class loci.formats.in.ScanrReader

ACQUISITION_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

ACQUISITION_TIME_TAG - Static variable in class loci.formats.in.FlowSightReader

acquisitionDate - Variable in class loci.formats.in.BioRadSCNReader

acquisitionDate - Variable in class loci.formats.in.SISReader

acquisitionDate - Variable in class ome.xml.model.Image

acquisitionDates - Variable in class loci.formats.in.FlexReader

acquisitionMode - Variable in class loci.formats.in.ZeissCZIReader.Channel

acquisitionMode - Variable in class ome.xml.model.Channel

AcquisitionMode - Enum in ome.xml.model.enums

AcquisitionMode(String) - Constructor for enum ome.xml.model.enums.AcquisitionMode

AcquisitionModeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for AcquisitionMode.

AcquisitionModeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

acquisitions - Variable in class loci.formats.in.ZeissCZIReader

acquisitionTime - Variable in class loci.formats.in.CellSensReader.Pyramid

act - Variable in class loci.formats.in.GIFReader

Active color table.

actionPerformed(ActionEvent) - Method in class loci.formats.gui.CacheComponent

Handles combo box changes.

actionPerformed(ActionEvent) - Method in class loci.formats.gui.DataConverter

actionPerformed(ActionEvent) - Method in class loci.formats.gui.ImageViewer

Handles menu commands.

actionPerformed(ActionEvent) - Method in class loci.formats.tools.EditTiffG

actionPerformed(ActionEvent) - Method in class loci.plugins.config.ConfigWindow

actionPerformed(ActionEvent) - Method in class loci.plugins.in.SeriesDialog

actionPerformed(ActionEvent) - Method in class loci.plugins.shortcut.ShortcutPanel

Handles button presses.

actionPerformed(ActionEvent) - Method in class loci.plugins.util.DataBrowser

actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow

actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow.SearchBox

active - Variable in class loci.formats.in.FV1000Reader.ChannelData

active - Variable in class loci.formats.in.LeicaHandler.Detector

active - Variable in class loci.formats.in.LeicaReader.Detector

ACTIVE_CHANNEL - Static variable in class loci.formats.in.CellSensReader

ACTIVE_LAYER_INDEX_VECTOR - Static variable in class loci.formats.in.CellSensReader

ACTIVE_LAYER_VECTOR - Static variable in class loci.formats.in.CellSensReader

ACTIVE_PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_PANE_UPER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_STACK_DIMENSION - Static variable in class loci.formats.in.CellSensReader

activeChannelIndices - Variable in class loci.formats.in.LeicaReader

activeChannels - Variable in class loci.formats.in.PrairieMetadata

Set of active channel indices.

activeDetector - Variable in class loci.formats.in.LIFReader

activePane - Variable in class loci.poi.hssf.util.PaneInformation

activePlane - Variable in class loci.formats.in.OperettaReader.OperettaHandler

activeSrcHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The height of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.

activeSrcMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The X coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.

activeSrcMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The Y coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.

activeSrcWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The width of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.

ACTUAL_TEMPERATURE - Static variable in class loci.formats.in.FluoviewReader

actualBytes - Variable in class jj2000.j2k.entropy.encoder.EBCOTLayer

The actual number of bytes which are consumed by the the current and any previous layers.

adcDE - Variable in class loci.formats.in.SDTInfo

ADC sample delay (SPC-930).

adcRE - Variable in class loci.formats.in.SDTInfo

adcZoom - Variable in class loci.formats.in.SDTInfo

add(byte) - Method in class loci.formats.codec.ByteVector

add(byte[]) - Method in class loci.formats.codec.ByteVector

add(byte[], int, int) - Method in class loci.formats.codec.ByteVector

add(byte[], int, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileCache

add(int[], int, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileCache

add(double) - Method in class loci.plugins.util.RecordedImageProcessor

add(int) - Method in class loci.plugins.util.RecordedImageProcessor

Add() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate an Add

add(int, Record) - Method in class loci.poi.hssf.model.WorkbookRecordList

ADD - Static variable in class loci.poi.hssf.record.formula.AddPtg

ADD - Static variable in class loci.poi.hssf.record.formula.UnaryPlusPtg

add(int, double) - Method in class loci.poi.util.DoubleList

add the specfied value at the specified index

add(double) - Method in class loci.poi.util.DoubleList

Appends the specified element to the end of this list

add(int, int) - Method in class loci.poi.util.IntList

add the specfied value at the specified index

add(int) - Method in class loci.poi.util.IntList

Appends the specified element to the end of this list

add(Object) - Method in class loci.poi.util.IntMapper

Appends the specified element to the end of this list

add(int, short) - Method in class loci.poi.util.ShortList

add the specfied value at the specified index

add(short) - Method in class loci.poi.util.ShortList

Appends the specified element to the end of this list

add(Integer) - Method in class ome.units.unit.Unit

add(Double) - Method in class ome.units.unit.Unit

add(T) - Method in class ome.xml.model.ReferenceList

add(int, T) - Method in class ome.xml.model.ReferenceList

add1DBits(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Get code for run and add to compressed bitstream.

add2DBits(byte[], int, int[][], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Place entry from mode table into compressed bitstream.

addAll(DoubleList) - Method in class loci.poi.util.DoubleList

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.

addAll(int, DoubleList) - Method in class loci.poi.util.DoubleList

Inserts all of the elements in the specified collection into this list at the specified position.

addAll(IntList) - Method in class loci.poi.util.IntList

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.

addAll(int, IntList) - Method in class loci.poi.util.IntList

Inserts all of the elements in the specified collection into this list at the specified position.

addAll(ShortList) - Method in class loci.poi.util.ShortList

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.

addAll(int, ShortList) - Method in class loci.poi.util.ShortList

Inserts all of the elements in the specified collection into this list at the specified position.

addAll(Collection<? extends T>) - Method in class ome.xml.model.ReferenceList

addAll(int, Collection<? extends T>) - Method in class ome.xml.model.ReferenceList

addAllowedTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Adds a TIFFTagSet object to the list of allowed tag sets.

addArea(int, short, int, short) - Method in class loci.poi.hssf.record.MergeCellsRecord

Add an area to consider a merged cell.

addArgumentPointer() - Method in class loci.poi.hssf.model.FormulaParser

Adds a pointer to the last token to the latest function argument list.

addBinData(BinData) - Method in class ome.xml.model.Mask

addBinData(BinData) - Method in class ome.xml.model.Pixels

addBooleanAnnotation(BooleanAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addBreak(short, short, short) - Method in class loci.poi.hssf.record.PageBreakRecord

Adds the page break at the specified parameters

addBSERecord(EscherBSERecord) - Method in class loci.poi.hssf.model.Workbook

addByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer

Adds the specified data to the end of the byte array stream.

addCacheListener(CacheListener) - Method in class loci.formats.cache.Cache

addCacheListener(CacheListener) - Method in interface loci.formats.cache.CacheReporter

Adds a listener for status update events.

addCacheListener(CacheListener) - Method in class loci.formats.cache.CacheStrategy

addCell(HSSFCell) - Method in class loci.poi.hssf.usermodel.HSSFRow

used internally to add a cell.

addCellOffset(short) - Method in class loci.poi.hssf.record.DBCellRecord

addChannel(Channel) - Method in class ome.xml.model.Pixels

addChar(char, int) - Method in class loci.poi.hssf.usermodel.FontDetails

addChars(char[], int[]) - Method in class loci.poi.hssf.usermodel.FontDetails

AddCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

addCheckbox(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog

Adds a checkbox to the given dialog object corresponding to the boolean option identified by the specified key.

addChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty

Add a new child to the collection of children

addChild(Property) - Method in interface loci.poi.poifs.property.Parent

Add a new child to the collection of children

addChildNode(IIOMetadataNode, String, Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

addChildNode(IIOMetadataNode, String, Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

addChildRecord(EscherRecord) - Method in class loci.poi.ddf.EscherContainerRecord

addChildRecord(EscherRecord) - Method in class loci.poi.ddf.UnknownEscherRecord

addChoice(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog

Adds a choice to the given dialog object corresponding to the string option identified by the specified key.

addClass(Class<? extends T>) - Method in class loci.formats.ClassList

Adds the given class, which must be assignable to the base class, to the list.

addCluster(int, int) - Method in class loci.poi.ddf.EscherDggRecord

addColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Adds a new color into an empty color slot.

addColumn(Object) - Method in class mdbtools.dbengine.sql.Select

addComment(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

addCommentAnnotation(CommentAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addDataset(Dataset) - Method in class ome.xml.model.OME

addDbcell(int) - Method in class loci.poi.hssf.record.IndexRecord

addDetector(Detector) - Method in class ome.xml.model.Instrument

addDichroic(Dichroic) - Method in class ome.xml.model.Instrument

addDirectory(String, int) - Method in class loci.formats.in.L2DReader

Recursively add all of the files in the given directory to the used file list.

addDirectory(DirectoryProperty) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

add a new DirectoryProperty

addDocument(POIFSDocument) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

add a new POIFSDocument

addDoubleAnnotation(DoubleAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addElements() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

Adds the elements into this format object based on the XML schema and DTD.

addElements() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

Adds the elements into this format object based on the XML schema and DTD.

addEntry(Comparable<Object>, DefaultListModel) - Static method in class loci.plugins.config.ConfigWindow

addEOFB(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Add an End-of-Facsimile-Block (EOFB == 0x001001) to the compressed bitstream.

addEOL(boolean, boolean, boolean, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Add an End-of-Line (EOL == 0x001) to the compressed bitstream with optional byte alignment.

addEscherProperty(EscherProperty) - Method in class loci.poi.ddf.EscherOptRecord

Add a property to this record.

addEscherRecord(int, EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

addEscherRecord(EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

addExperiment(Experiment) - Method in class ome.xml.model.OME

addExperimenter(Experimenter) - Method in class ome.xml.model.OME

addExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.OME

addFileAnnotation(FileAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addFileToList(String, boolean) - Method in class loci.formats.in.DicomReader

Determine if the given file belongs in the same dataset as this file.

addFilter(Filter) - Method in class ome.xml.model.Instrument

addFilterSet(FilterSet) - Method in class ome.xml.model.Instrument

addFormatRun(UnicodeString.FormatRun) - Method in class loci.poi.hssf.record.UnicodeString

Adds a font run to the formatted string.

addGlobalMeta(String, Object) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, boolean) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, byte) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, short) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, int) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, long) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, float) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, double) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, char) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMetaList(String, Object) - Method in class loci.formats.FormatReader

Add the given key/value pair to the global metadata hashtable.

addGroupBy(FQColumn) - Method in class mdbtools.dbengine.sql.Select

addImage(Image) - Method in class ome.xml.model.OME

addInfo(int, String) - Method in class loci.formats.in.DicomReader

addInfo(int, int) - Method in class loci.formats.in.DicomReader

addInfoRecord(ExtSSTInfoSubRecord) - Method in class loci.poi.hssf.record.ExtSSTRecord

addInstrument(Instrument) - Method in class ome.xml.model.OME

additionalMakeup - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

addLightSource(LightSource) - Method in class ome.xml.model.Instrument

addLightSourceSettings(LightSourceSettings) - Method in class ome.xml.model.MicrobeamManipulation

addListAnnotation(ListAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addListener(HSSFListener, short) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest

add an event listener for a particular record type.

addListenerForAllRecords(HSSFListener) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest

This is the equivilent of calling addListener(myListener, sid) for EVERY record in the loci.poi.hssf.record package.

addLongAnnotation(LongAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addMapAnnotation(MapAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addMergedRegion(int, short, int, short) - Method in class loci.poi.hssf.model.Sheet

addMergedRegion(Region) - Method in class loci.poi.hssf.usermodel.HSSFSheet

adds a merged region of cells (hence those cells form one)

addMeta(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader

Adds an entry to the specified Hashtable.

addMetadataOnly(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Insert a MetadataOnly element under the Image specified by 'index' in the given OME-XML metadata object.

addMetadataOnly(OMEXMLMetadata, int, boolean) - Method in interface loci.formats.services.OMEXMLService

Insert a MetadataOnly element under the Image specified by 'index' in the given OME-XML metadata object.

addMetadataOnly(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

addMetadataOnly(OMEXMLMetadata, int, boolean) - Method in class loci.formats.services.OMEXMLServiceImpl

addMetaList(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader

Add the given key/value pair to the given hashtable.

addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experiment

addModelObject(String, OMEModelObject) - Method in interface ome.xml.model.OMEModel

addModelObject(String, OMEModelObject) - Method in class ome.xml.model.OMEModelImpl

addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Adds ModuloAlong* annotations to the given OME-XML metadata object, using the given CoreMetadata object to determine modulo dimensions.

addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

addName(NameRecord) - Method in class loci.poi.hssf.model.Workbook

creates new name

addNode(Box) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

addNTP(int, int) - Method in class jj2000.j2k.codestream.reader.CBlkInfo

Adds the number of new truncation for specified layer.

addObjective(Objective) - Method in class ome.xml.model.Instrument

addOptPoint(float, int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Adds a new optimization point, with target bitrate 'brate' and with 'elyrs' (unoptimized) extra layers after it.

addOrderBy(OrderBy) - Method in class mdbtools.dbengine.sql.Select

addPicture(byte[], int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Adds a picture to the workbook.

addPlane(Plane) - Method in class ome.xml.model.Pixels

addPlate(Plate) - Method in class ome.xml.model.OME

addPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Plate

addPossible(String) - Method in class loci.plugins.prefs.StringOption

Adds a possible value to the list.

addProject(Project) - Method in class ome.xml.model.OME

addProp(HashMap<String, String>, String, String, HashMap<String, String>) - Method in class loci.plugins.config.ConfigWindow

addProp(int, EscherPropertyMetaData) - Static method in class loci.poi.ddf.EscherProperties

addProperty(Property) - Method in class loci.poi.poifs.property.PropertyTable

Add a property to the list of properties we manage

AddPtg - Class in loci.poi.hssf.record.formula

Addition operator PTG the "+" binomial operator.

AddPtg() - Constructor for class loci.poi.hssf.record.formula.AddPtg

Creates new AddPtg

AddPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AddPtg

addPtyFiles() - Method in class loci.formats.in.FV1000Reader

addReagent(Reagent) - Method in class ome.xml.model.Screen

addReference(OMEModelObject, Reference) - Method in interface ome.xml.model.OMEModel

addReference(OMEModelObject, Reference) - Method in class ome.xml.model.OMEModelImpl

addREFRecord(ExternSheetSubRecord) - Method in class loci.poi.hssf.record.ExternSheetRecord

adds REF struct (ExternSheetSubRecord)

addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

addROI(ROI) - Method in class ome.xml.model.OME

addRow(RowRecord) - Method in class loci.poi.hssf.model.Sheet

Adds a row record to the sheet

addRow(HSSFRow, boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

add a row to the sheet

addRow(Object[]) - Method in class mdbtools.dbengine.MemoryData

Add a row of data

addScreen(Screen) - Method in class ome.xml.model.OME

addScrollBars(Container) - Static method in class loci.plugins.util.WindowTools

Adds AWT scroll bars to the given container.

addSection(Section) - Method in class loci.poi.hpsf.MutablePropertySet

Adds a section to this property set.

addSection(Section) - Method in class loci.poi.hpsf.SpecialPropertySet

addSeriesMeta(String, Object) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, boolean) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, byte) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, short) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, int) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, long) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, float) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, double) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, char) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMetaList(String, Object) - Method in class loci.formats.FormatReader

Add the given key/value pair to the current series metadata hashtable.

addShape(Shape) - Method in class ome.xml.model.Union

addSheetIndexToExternSheet(short) - Method in class loci.poi.hssf.model.Workbook

addSheetReference(String, int) - Method in class loci.poi.hssf.util.SheetReferences

addShortOrLongField(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

addSSTString(UnicodeString) - Method in class loci.poi.hssf.model.Workbook

Adds a string to the SST table and returns its index (if its a duplicate just returns its index and update the counts) ASSUMES compressed unicode (meaning 8bit)

addSSTString(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

Do not call this method from your applications. Use the methods available in the HSSFRow to add string HSSFCells

addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.AbstractShape

Add standard properties to the opt record.

addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.CommentShape

Sets standard escher options for a comment.

addStatusListener(StatusListener) - Method in interface loci.common.StatusReporter

addStatusListener(StatusListener) - Method in class loci.plugins.in.ImagePlusReader

addStatusListener(StatusListener) - Method in class loci.plugins.in.ImportProcess

addString(UnicodeString) - Method in class loci.poi.hssf.record.SSTRecord

Add a string.

addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Add a new string to the string table.

addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Add a new string to the string table.

addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Add a new string to the string table.

addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Add a new string to the string table.

addSubRecord(int, Object) - Method in class loci.poi.hssf.record.ObjRecord

addSubRecord(Object) - Method in class loci.poi.hssf.record.ObjRecord

addTable(Object) - Method in class mdbtools.dbengine.sql.Select

addTagAnnotation(TagAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Adds an element to the group of TIFFTagSets of which this directory is aware.

addTermAnnotation(TermAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addTiffData(TiffData) - Method in class ome.xml.model.Pixels

addTIFFField(TIFFField) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Adds a TIFF field to the directory.

addTimestampAnnotation(TimestampAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addToAll(int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

addToHashtable() - Method in class loci.formats.in.ZeissLSMReader.SubBlock

addToSSTIfRequired() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

addToStringTable(IntMapper, UnicodeString) - Static method in class loci.poi.hssf.record.SSTDeserializer

addUsedFile(String, String) - Method in class loci.formats.in.PerkinElmerReader

Add the given file to the used files list.

addUserCommentMeta(Element, int) - Method in class loci.formats.in.LIFReader

addValueName(int, String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Adds a mnemonic name for a particular value that this tag's data may take on.

addValueRecord(int, CellValueRecordInterface) - Method in class loci.poi.hssf.model.Sheet

Adds a value record to the sheet's contained binary records (i.e.

addWell(Well) - Method in class ome.xml.model.Plate

addWellSample(WellSample) - Method in class ome.xml.model.Well

addXMLAnnotation(XMLAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addXYZPoints(IIOMetadataNode, String, double, double, double) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

adjust - Variable in class loci.formats.in.SlidebookReader

adjustBitDepths - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

adjustEndianness - Variable in class loci.formats.in.GatanReader

adjustForWhiteBalance(short, int) - Method in class loci.formats.in.DNGReader

adjustForWhiteBalance(short, int) - Method in class loci.formats.in.NikonReader

adjustmentValueChanged(AdjustmentEvent) - Method in class loci.plugins.util.DataBrowser

adjustWellDimensions() - Method in class loci.formats.in.ScanrReader

advanceBlock() - Method in class loci.formats.in.APNGReader.PNGInputStream

AE - Static variable in class loci.formats.in.DicomReader

AffineTransform - Class in ome.xml.model

AffineTransform() - Constructor for class ome.xml.model.AffineTransform

Default constructor.

AffineTransform(Element, OMEModel) - Constructor for class ome.xml.model.AffineTransform

Constructs AffineTransform recursively from an XML DOM tree.

AffineTransform(AffineTransform) - Constructor for class ome.xml.model.AffineTransform

Copy constructor.

AFIReader - Class in loci.formats.in

AFIReader is the file format reader for Aperio AFI files.

AFIReader() - Constructor for class loci.formats.in.AFIReader

Constructs a new AFI reader.

AFIReader.AFIHandler - Class in loci.formats.in

AFIReader.AFIHandler() - Constructor for class loci.formats.in.AFIReader.AFIHandler

afterRecordSerialize(int, short, int, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener

Fired after a record has been serialized.

afterRecordSerialize(int, short, int, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener

ag - Variable in class loci.formats.FileStitcher.ExternalSeries

Aggregate - Interface in mdbtools.dbengine.functions

aggregateDrawingRecords(DrawingManager2) - Method in class loci.poi.hssf.model.Sheet

AggregateMetadata - Class in ome.xml.meta

A metadata store which delegates the actual storage to one or more sub metadata stores.

AggregateMetadata(List<BaseMetadata>) - Constructor for class ome.xml.meta.AggregateMetadata

Creates a new instance.

aggregateQuery(Data) - Method in class mdbtools.dbengine.SelectEngine

execute an aggregate query

AggregateQuery - Class in mdbtools.dbengine.tasks

resolve the columns, num rows not the same

AggregateQuery(Task, Select, int[]) - Constructor for class mdbtools.dbengine.tasks.AggregateQuery

AHZ - Static variable in class ome.units.UNITS

AIMReader - Class in loci.formats.in

AIMReader is the file format reader for .aim files.

AIMReader() - Constructor for class loci.formats.in.AIMReader

Constructs a new AIM reader.

airPressure - Variable in class loci.formats.in.ZeissCZIReader

airPressure - Variable in class ome.xml.model.ImagingEnvironment

AISF - Static variable in class loci.formats.in.VolocityClippingReader

AL3D_MAGIC_STRING - Static variable in class loci.formats.in.AliconaReader

AliconaReader - Class in loci.formats.in

AliconaReader is the file format reader for Alicona AL3D files.

AliconaReader() - Constructor for class loci.formats.in.AliconaReader

Constructs a new Alicona reader.

ALIGN_CENTER - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

center horizontal alignment

ALIGN_CENTER_SELECTION - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

center-selection? horizontal alignment

ALIGN_FILL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

fill? horizontal alignment

ALIGN_GENERAL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

general (normal) horizontal alignment

ALIGN_JUSTIFY - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

justified horizontal alignment

ALIGN_LEFT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

left-justified horizontal alignment

ALIGN_RIGHT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

right-justified horizontal alignment

ALIGNMENT - Static variable in class loci.formats.in.ZeissCZIReader

alignROI - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

By specifying this parameter, the ROI mask will be limited to covering only entire code-blocks.

aLine - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

all_data - Variable in class loci.poi.hssf.record.FormulaRecord

ALL_DOMAINS - Static variable in class loci.formats.FormatTools

List of all supported domains.

ALL_TYPES - Static variable in class loci.formats.gui.GUITools

String to use for "all types" combination filter.

allBlockLengths - Variable in class loci.formats.in.SDTInfo

allBlockOffsets - Variable in class loci.formats.in.SDTInfo

allFiles - Variable in class loci.formats.in.BrukerReader

allFiles - Variable in class loci.formats.in.PerkinElmerReader

List of all files to open

allocate(int...) - Static method in class loci.common.DataTools

Allocates a 1-dimensional byte array matching the product of the given sizes.

allocate(long, int) - Method in class loci.common.NIOByteBufferProvider

Allocates or maps the desired file data into memory.

allocateDirect(long, int) - Method in class loci.common.NIOByteBufferProvider

Allocates memory and copies the desired file data into it.

allocatedSize - Variable in class loci.formats.in.ZeissCZIReader.Segment

allocateMappedByteBuffer(long, int) - Method in class loci.common.NIOByteBufferProvider

Memory maps the desired file data into memory.

allocateRate() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Allocates output bit-rate for each tile in parsing mode: The allocator simulates the truncation of a virtual layer-resolution progressive codestream.

allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager

Allocates new shape id for the new drawing group id.

allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager2

Allocates new shape id for the new drawing group id.

allocateSpace(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Allocate space for a block of indices

allowedTagsByName - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

allowedTagsByNumber - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

allowedTagSets - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

allowOpen - Variable in class loci.formats.gui.FormatFileFilter

Whether it is ok to open a file to determine its type.

allowOpen - Variable in class loci.formats.ImageReader

allowShow - Variable in class loci.plugins.util.DataBrowser

ALPHA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the first lifting step coefficient

ALPHA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the first lifting step coefficient

ALPHABET_LENGTH - Static variable in class loci.formats.ResourceNamer

alphabeticIndexCount(String) - Static method in class loci.formats.ResourceNamer

alphaChannel - Variable in enum ome.jxr.ifd.PixelFormat

alphaImagePlaneFlag - Variable in class ome.jxr.parser.DatastreamParser

alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

ALPHANUM - Static variable in class loci.tests.IOTester

alphaShort - Variable in class loci.formats.gui.Index16ColorModel

Lookup tables.

alreadyChecked() - Method in class loci.formats.UpgradeChecker

Return true if an upgrade check has already been performed in this JVM session.

ALT_BARS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

ALT_BARS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Wide dots

alt_pg_buf - Variable in class mdbtools.libmdb.MdbHandle

ALT_ZVI - Static variable in class loci.common.DateTools

ALT_ZVI_EPOCH - Static variable in class loci.common.DateTools

altCodec - Variable in class loci.formats.in.NativeQTReader

Some movies use two video codecs -- this is the second codec.

ALTERNATE_MD5 - Static variable in class loci.tests.testng.Configuration

alternateCenter - Variable in class loci.formats.in.LeicaHandler

alternateCenter - Variable in class loci.formats.in.LIFReader

alternateexpression - Static variable in class loci.poi.hssf.record.WSBoolRecord

alternateformula - Static variable in class loci.poi.hssf.record.WSBoolRecord

ALTITUDE_REF_SEA_LEVEL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSAltitudeRef" tag.

ALTITUDE_REF_SEA_LEVEL_REFERENCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSAltitudeRef" tag.

altPlanes - Variable in class loci.formats.in.NativeQTReader

Number of frames that use the alternate codec.

alwaysCalc - Variable in class loci.poi.hssf.record.FormulaRecord

AM - Static variable in class ome.units.UNITS

AmiraParameters - Class in loci.formats.tools

AmiraParameters handles parsing and writing of AmiraMesh headers.

AmiraParameters(String) - Constructor for class loci.formats.tools.AmiraParameters

AmiraParameters(RandomAccessInputStream) - Constructor for class loci.formats.tools.AmiraParameters

AmiraReader - Class in loci.formats.in

This is a file format reader for AmiraMesh data.

AmiraReader() - Constructor for class loci.formats.in.AmiraReader

AmiraReader.ASCII - Class in loci.formats.in

This class provides a not-quite-efficient, but simple reader for planes stored in ASCII-encoded numbers.

AmiraReader.ASCII(int, int) - Constructor for class loci.formats.in.AmiraReader.ASCII

AmiraReader.HxRLE - Class in loci.formats.in

This is the reader for RLE-compressed AmiraMeshes.

AmiraReader.HxRLE(int, long) - Constructor for class loci.formats.in.AmiraReader.HxRLE

AmiraReader.HxZip - Class in loci.formats.in

This is the reader for GZip-compressed AmiraMeshes.

AmiraReader.HxZip(long) - Constructor for class loci.formats.in.AmiraReader.HxZip

AmiraReader.PlaneReader - Interface in loci.formats.in

This is the common interface for all formats, compressed or not.

amplificationGain - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

amplificationGain - Variable in class ome.xml.model.Detector

analysisFiles - Variable in class loci.formats.in.MIASReader

analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.

analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

A specific version of the analyze_hpf() method that works on int data.

analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

The general version of the analyze_hpf() method, it just calls the specialized version.

analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

An implementation of the analyze_hpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.

analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

A specific version of the analyze_hpf() method that works on int data.

analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

The general version of the analyze_hpf() method, it just calls the specialized version.

analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

An implementation of the analyze_hpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.

analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.

analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

A specific version of the analyze_lpf() method that works on int data.

analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

The general version of the analyze_lpf() method, it just calls the specialized version.

analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

An implementation of the analyze_lpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.

analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

A specific version of the analyze_lpf() method that works on int data.

analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

The general version of the analyze_lpf() method, it just calls the specialized version.

analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

An implementation of the analyze_lpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.

AnalyzeReader - Class in loci.formats.in

AnalyzeReader is the file format reader for Analyze 7.5 files.

AnalyzeReader() - Constructor for class loci.formats.in.AnalyzeReader

Constructs a new Analyze reader.

anbytes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Actual number of read bytes

anchor - Variable in class loci.poi.hssf.usermodel.HSSFShape

ANCHOR_ID_CHART_TITLE - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_SERIES_OR_POINT - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_X_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_Y_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_Z_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

anchorType - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor

and(int) - Method in class loci.plugins.util.RecordedImageProcessor

AND - Static variable in class mdbtools.dbengine.sql.Condition

ANDOR_MAGIC_STRING - Static variable in class loci.formats.in.FluoviewReader

ANDOR_SHIFT_SPEED - Static variable in class loci.formats.in.CellSensReader

andTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

andTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

anGainExp - Variable in class jj2000.j2k.wavelet.Subband

The base 2 exponent of the analysis gain of the subband.

ANGLE - Static variable in class loci.formats.in.ZeissLSMReader

angle - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

Angle - Class in ome.units.quantity

A wrapper for the Angle class from the units implementation.

Angle(Number, Unit<Angle>) - Constructor for class ome.units.quantity.Angle

angles - Variable in class loci.formats.in.ZeissCZIReader

ANGSTROM - Static variable in class ome.units.UNITS

anim - Variable in class loci.formats.gui.ImageViewer

anim - Variable in class loci.plugins.util.DataBrowser

animate - Variable in class loci.plugins.util.DataBrowser

ANIMATION_KEY - Static variable in class loci.formats.gui.ImageViewer

ANN_BOOLEAN_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_COMMENT_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_DOUBLE_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_LONG_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_TAG_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_TERM_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_TIME_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_XML_VALUE_END - Static variable in class loci.formats.in.FakeReader

ANN_XML_VALUE_START - Static variable in class loci.formats.in.FakeReader

Annotation - Class in ome.xml.model

Annotation() - Constructor for class ome.xml.model.Annotation

Default constructor.

Annotation(Element, OMEModel) - Constructor for class ome.xml.model.Annotation

Constructs Annotation recursively from an XML DOM tree.

Annotation(Annotation) - Constructor for class ome.xml.model.Annotation

Copy constructor.

ANNOTATION_NAMESPACE - Static variable in class loci.formats.in.FakeReader

ANNOTATION_PREFIX - Static variable in class loci.formats.in.FakeReader

annotationLinks - Variable in class ome.xml.model.Annotation

annotationLinks - Variable in class ome.xml.model.Channel

annotationLinks - Variable in class ome.xml.model.Dataset

annotationLinks - Variable in class ome.xml.model.Detector

annotationLinks - Variable in class ome.xml.model.Dichroic

annotationLinks - Variable in class ome.xml.model.Experimenter

annotationLinks - Variable in class ome.xml.model.ExperimenterGroup

annotationLinks - Variable in class ome.xml.model.Filter

annotationLinks - Variable in class ome.xml.model.Image

annotationLinks - Variable in class ome.xml.model.Instrument

annotationLinks - Variable in class ome.xml.model.LightPath

annotationLinks - Variable in class ome.xml.model.LightSource

annotationLinks - Variable in class ome.xml.model.Objective

annotationLinks - Variable in class ome.xml.model.Plane

annotationLinks - Variable in class ome.xml.model.Plate

annotationLinks - Variable in class ome.xml.model.PlateAcquisition

annotationLinks - Variable in class ome.xml.model.Project

annotationLinks - Variable in class ome.xml.model.Reagent

annotationLinks - Variable in class ome.xml.model.ROI

annotationLinks - Variable in class ome.xml.model.Screen

annotationLinks - Variable in class ome.xml.model.Shape

annotationLinks - Variable in class ome.xml.model.Well

AnnotationRef - Class in ome.xml.model

AnnotationRef() - Constructor for class ome.xml.model.AnnotationRef

Default constructor.

AnnotationRef(Element, OMEModel) - Constructor for class ome.xml.model.AnnotationRef

Constructs AnnotationRef recursively from an XML DOM tree.

AnnotationRef(AnnotationRef) - Constructor for class ome.xml.model.AnnotationRef

Copy constructor.

ANNOTATIONS - Static variable in class ome.specification.XMLMockObjects

The supported types of annotations.

annotator - Variable in class ome.xml.model.Annotation

ANO_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

ANSI_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont

ANSI character set

AnWTFilter - Class in jj2000.j2k.wavelet.analysis

This abstract class defines the methods of all analysis wavelet filters.

AnWTFilter() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilter

AnWTFilterFloat - Class in jj2000.j2k.wavelet.analysis

This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for float data specifically.

AnWTFilterFloat() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

AnWTFilterFloatLift9x7 - Class in jj2000.j2k.wavelet.analysis

This class inherits from the analysis wavelet filter definition for int data.

AnWTFilterFloatLift9x7() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

AnWTFilterInt - Class in jj2000.j2k.wavelet.analysis

This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for int data specifically.

AnWTFilterInt() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterInt

AnWTFilterIntLift5x3 - Class in jj2000.j2k.wavelet.analysis

This class inherits from the analysis wavelet filter definition for int data.

AnWTFilterIntLift5x3() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

AnWTFilterSpec - Class in jj2000.j2k.wavelet.analysis

This class extends ModuleSpec class for analysis filters specification holding purpose.

AnWTFilterSpec(int, int, byte, QuantTypeSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Constructs a new 'AnWTFilterSpec' for the specified number of components and tiles.

APA - Static variable in class ome.units.UNITS

APERIO_IMAGE_DESCRIPTION_PREFIX - Static variable in class loci.formats.in.SVSReader

TIFF image description prefix for Aperio SVS files.

APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD

APLReader - Class in loci.formats.in

APLReader is the file format reader for Olympus APL files.

APLReader() - Constructor for class loci.formats.in.APLReader

Constructs a new APL reader.

APNGReader - Class in loci.formats.in

APNGReader is the file format reader for Animated Portable Network Graphics (APNG) images.

APNGReader() - Constructor for class loci.formats.in.APNGReader

Constructs a new APNGReader.

APNGReader.PNGBlock - Class in loci.formats.in

APNGReader.PNGBlock() - Constructor for class loci.formats.in.APNGReader.PNGBlock

APNGReader.PNGInputStream - Class in loci.formats.in

InputStream implementation that stitches together IDAT blocks into a seamless zlib stream.

APNGReader.PNGInputStream(String) - Constructor for class loci.formats.in.APNGReader.PNGInputStream

APNGReader.PNGInputStream(String, int) - Constructor for class loci.formats.in.APNGReader.PNGInputStream

APNGWriter - Class in loci.formats.out

APNGWriter is the file format writer for PNG and APNG files.

APNGWriter() - Constructor for class loci.formats.out.APNGWriter

append(ILoggingEvent) - Method in class loci.plugins.util.IJStatusEchoer

appendChild(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

appendedCompressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

appendServerMap(String, String) - Static method in class loci.formats.in.FlexReader

Add the path 'realName' to the mapping for the server named 'alias'.

applicationData - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

applicationIDs - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

applyCalibration(ImagePlus) - Method in class loci.plugins.in.Calibrator

Applies spatial calibrations to an image stack.

applyColors(List<ImagePlus>) - Method in class loci.plugins.in.Colorizer

applyColors(List<ImagePlus>) - Method in class loci.plugins.in.ImagePlusReader

applyDisplayRanges(ImagePlus, int) - Method in class loci.plugins.in.Colorizer

applyFont(int, int, short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Applies a font to the specified characters of a string.

applyFont(int, int, HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Applies a font to the specified characters of a string.

applyFont(HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Sets the font of the entire string.

applyFont(short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Applies the specified font to the entire string.

applyMethodStack(List<RecordedImageProcessor.MethodEntry>) - Method in class loci.plugins.util.RecordedImageProcessor

applystyles - Static variable in class loci.poi.hssf.record.WSBoolRecord

applyTable(int[]) - Method in class loci.plugins.util.RecordedImageProcessor

approximation - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

arabic - Variable in class loci.poi.hssf.record.WindowTwoRecord

arate - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Actual decoding rate in bpp

ArbROIMaskGenerator - Class in jj2000.j2k.roi.encoder

This class generates the ROI bit-mask when, at least, one ROI is not rectangular.

ArbROIMaskGenerator(ROI[], int, Quantizer) - Constructor for class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

The constructor of the arbitrary mask generator

arbShape - Variable in class jj2000.j2k.roi.encoder.ROI

Where or not the ROI shape is arbitrary

Arc - Class in ome.xml.model

Arc() - Constructor for class ome.xml.model.Arc

Default constructor.

Arc(Element, OMEModel) - Constructor for class ome.xml.model.Arc

Constructs Arc recursively from an XML DOM tree.

Arc(Arc) - Constructor for class ome.xml.model.Arc

Copy constructor.

ARC_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of an arc.

ARCHIVE - Static variable in class loci.formats.in.FlexReader

ArcType - Enum in ome.xml.model.enums

ArcType(String) - Constructor for enum ome.xml.model.enums.ArcType

ArcTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ArcType.

ArcTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ArcTypeEnumHandler

Area3DPtg - Class in loci.poi.hssf.record.formula

Title: Area 3D Ptg - 3D referecnce (Sheet + Area)

Area3DPtg() - Constructor for class loci.poi.hssf.record.formula.Area3DPtg

Creates new AreaPtg

Area3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg

Area3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg

AreaAPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaAPtg

AreaAPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg

AreaAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg

AreaErrPtg - Class in loci.poi.hssf.record.formula

AreaErr - handles deleted cell area references.

AreaErrPtg() - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg

AreaErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg

AreaFormatRecord - Class in loci.poi.hssf.record

The area format record is used to define the colours and patterns for an area.

AreaFormatRecord() - Constructor for class loci.poi.hssf.record.AreaFormatRecord

AreaFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaFormatRecord

Constructs a AreaFormat record and sets its fields appropriately.

AreaNAPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaNAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg

AreaNAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg

AreaNPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaNPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNPtg

AreaNPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNPtg

AreaNVPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaNVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg

AreaNVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg

AreaPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaPtg() - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaPtg(String) - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaRecord - Class in loci.poi.hssf.record

The area record is used to define a area chart.

AreaRecord() - Constructor for class loci.poi.hssf.record.AreaRecord

AreaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaRecord

Constructs a Area record and sets its fields appropriately.

AreaReference - Class in loci.poi.hssf.util

AreaReference(String) - Constructor for class loci.poi.hssf.util.AreaReference

Create an area ref from a string representation

areas - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

AreaVPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaVPtg

AreaVPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg

AreaVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg

areIntArraysEqual(int[], int[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

areSampleSizesEqual(SampleModel) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Returns whether all samples have the same number of bits.

ARFReader - Class in loci.formats.in

ARFReader is the file format reader for Axon Raw Format (ARF) files, produced by INDEC BioSystems's Imaging Workbench software.

ARFReader() - Constructor for class loci.formats.in.ARFReader

Constructs a new ARF reader.

arg - Variable in class loci.plugins.LociExporter

Argument passed to setup method.

arg - Variable in class loci.plugins.Slicer

Plugin options.

args - Static variable in class loci.plugins.shortcut.ShortcutPanel

Details for installed plugins.

args - Variable in class loci.plugins.util.RecordedImageProcessor.MethodEntry

argument - Variable in class mdbtools.dbengine.sql.FunctionDef

Arguments() - Method in class loci.poi.hssf.model.FormulaParser

get arguments to a function

ARRAY - Static variable in class loci.formats.in.GatanReader

Data types.

array_to_string(int[], int) - Static method in class mdbtools.libmdb.Money

arraycopy(byte[], int, byte[], int, int) - Static method in class loci.poi.util.ArrayUtil

This is really a debugging version of System.arraycopy().

arrayMoveWithin(Object[], int, int, int) - Static method in class loci.poi.util.ArrayUtil

Moves a number of entries in an array to another point in the array, shifting those inbetween as required.

ArrayPtg - Class in loci.poi.hssf.record.formula

ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.

ArrayPtg() - Constructor for class loci.poi.hssf.record.formula.ArrayPtg

ArrayPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtg

ArrayPtgA - Class in loci.poi.hssf.record.formula

ArrayPtgA - handles arrays

ArrayPtgA() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA

ArrayPtgA(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA

ArrayPtgV - Class in loci.poi.hssf.record.formula

ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.

ArrayPtgV() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV

ArrayPtgV(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV

arrayToString(Array) - Method in class loci.formats.services.NetCDFServiceImpl

ArrayUtil - Class in jj2000.j2k.util

This class contains a colleaction of utility static methods for arrays.

ArrayUtil() - Constructor for class jj2000.j2k.util.ArrayUtil

ArrayUtil - Class in loci.poi.util

Utility classes for dealing with arrays.

ArrayUtil() - Constructor for class loci.poi.util.ArrayUtil

ARROW - Static variable in class loci.formats.in.FV1000Reader

ARROW - Static variable in class loci.formats.in.LeicaHandler.ROI

ARROW - Static variable in class loci.formats.in.LIFReader.ROI

ARTIST - Static variable in class loci.formats.tiff.IFD

AS - Static variable in class loci.formats.in.DicomReader

AS - Static variable in class ome.units.UNITS

ascending - Variable in class mdbtools.dbengine.sql.OrderBy

ascii - Variable in class loci.formats.in.AmiraReader

ascii - Variable in class loci.formats.tools.AmiraParameters

AsciiImage - Class in loci.formats.tools

A utility class for outputting a BufferedImage as ASCII text.

AsciiImage(BufferedImage) - Constructor for class loci.formats.tools.AsciiImage

asDateTime(DateTimeZone) - Method in class ome.xml.model.primitives.Timestamp

Returns the timestamp as a Joda DateTime type.

asInstant() - Method in class ome.xml.model.primitives.Timestamp

Returns the timestamp as a Joda DateTime type.

asMap() - Method in class loci.formats.in.DeltavisionReader.DVExtHdrFields

asRetrieve(MetadataStore) - Method in interface loci.formats.services.OMEXMLService

Gets the given MetadataStore object as a MetadataRetrieve.

asRetrieve(MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl

assertBlock(int, int, int, int, int) - Method in class loci.tests.testng.OpenBytesPerformanceTest

assertCompression(TiffCompression, boolean) - Method in class loci.tests.testng.CompressDecompressTest

Tests the writing of the tiles.

assertId(String, boolean, int) - Static method in class loci.formats.FormatTools

Asserts that the current file is either null, or not, according to the given flag.

assertRows(int) - Method in class loci.tests.testng.OpenBytesPerformanceTest

assertSeries(int) - Method in class loci.tests.testng.OpenBytesPerformanceTest

assertStep(ImportStep) - Method in class loci.plugins.in.ImportProcess

assertTiles(String, String, int, int, boolean) - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of the tiles.

assertUnevenTiles(String, String, int, int, boolean) - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of the tiles.

assignL2Norm(float) - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Assigns the given L2-norm to the first leaf that does not have an L2-norm value yet (i.e.

assignPlaneIndices() - Method in class loci.formats.in.ZeissCZIReader

assignValues(double[]) - Method in class loci.formats.in.TextReader

Assigns values from the given row into the data array.

associations - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

associations - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

assoicateShapeToObjRecord(EscherRecord, Record) - Method in class loci.poi.hssf.record.EscherAggregate

Associates an escher record to an OBJ record or a TXO record.

asStore(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Gets the given MetadataRetrieve object as a MetadataStore.

asStore(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl

ASTRONOMY_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the astronomy domain.

asXMLElement(Document) - Method in class ome.xml.model.AbstractOMEModelObject

asXMLElement(Document, Element) - Method in class ome.xml.model.AbstractOMEModelObject

Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.

asXMLElement(Document) - Method in class ome.xml.model.AffineTransform

asXMLElement(Document, Element) - Method in class ome.xml.model.AffineTransform

asXMLElement(Document) - Method in class ome.xml.model.Annotation

asXMLElement(Document, Element) - Method in class ome.xml.model.Annotation

asXMLElement(Document) - Method in class ome.xml.model.AnnotationRef

asXMLElement(Document, Element) - Method in class ome.xml.model.AnnotationRef

asXMLElement(Document) - Method in class ome.xml.model.Arc

asXMLElement(Document, Element) - Method in class ome.xml.model.Arc

asXMLElement(Document) - Method in class ome.xml.model.BasicAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.BasicAnnotation

asXMLElement(Document) - Method in class ome.xml.model.BinaryFile

asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryFile

asXMLElement(Document) - Method in class ome.xml.model.BinaryOnly

asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryOnly

asXMLElement(Document) - Method in class ome.xml.model.BinData

asXMLElement(Document, Element) - Method in class ome.xml.model.BinData

asXMLElement(Document) - Method in class ome.xml.model.BooleanAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.BooleanAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Channel

asXMLElement(Document, Element) - Method in class ome.xml.model.Channel

asXMLElement(Document) - Method in class ome.xml.model.ChannelRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ChannelRef

asXMLElement(Document) - Method in class ome.xml.model.CommentAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.CommentAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Dataset

asXMLElement(Document, Element) - Method in class ome.xml.model.Dataset

asXMLElement(Document) - Method in class ome.xml.model.DatasetRef

asXMLElement(Document, Element) - Method in class ome.xml.model.DatasetRef

asXMLElement(Document) - Method in class ome.xml.model.Detector

asXMLElement(Document, Element) - Method in class ome.xml.model.Detector

asXMLElement(Document) - Method in class ome.xml.model.DetectorSettings

asXMLElement(Document, Element) - Method in class ome.xml.model.DetectorSettings

asXMLElement(Document) - Method in class ome.xml.model.Dichroic

asXMLElement(Document, Element) - Method in class ome.xml.model.Dichroic

asXMLElement(Document) - Method in class ome.xml.model.DichroicRef

asXMLElement(Document, Element) - Method in class ome.xml.model.DichroicRef

asXMLElement(Document) - Method in class ome.xml.model.DoubleAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.DoubleAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Ellipse

asXMLElement(Document, Element) - Method in class ome.xml.model.Ellipse

asXMLElement(Document) - Method in class ome.xml.model.EmissionFilterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.EmissionFilterRef

asXMLElement(Document) - Method in class ome.xml.model.ExcitationFilterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExcitationFilterRef

asXMLElement(Document) - Method in class ome.xml.model.Experiment

asXMLElement(Document, Element) - Method in class ome.xml.model.Experiment

asXMLElement(Document) - Method in class ome.xml.model.Experimenter

asXMLElement(Document, Element) - Method in class ome.xml.model.Experimenter

asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroup

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroup

asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroupRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroupRef

asXMLElement(Document) - Method in class ome.xml.model.ExperimenterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterRef

asXMLElement(Document) - Method in class ome.xml.model.ExperimentRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimentRef

asXMLElement(Document) - Method in class ome.xml.model.External

asXMLElement(Document, Element) - Method in class ome.xml.model.External

asXMLElement(Document) - Method in class ome.xml.model.Filament

asXMLElement(Document, Element) - Method in class ome.xml.model.Filament

asXMLElement(Document) - Method in class ome.xml.model.FileAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.FileAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Filter

asXMLElement(Document, Element) - Method in class ome.xml.model.Filter

asXMLElement(Document) - Method in class ome.xml.model.FilterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.FilterRef

asXMLElement(Document) - Method in class ome.xml.model.FilterSet

asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSet

asXMLElement(Document) - Method in class ome.xml.model.FilterSetRef

asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSetRef

asXMLElement(Document) - Method in class ome.xml.model.GenericExcitationSource

asXMLElement(Document, Element) - Method in class ome.xml.model.GenericExcitationSource

asXMLElement(Document) - Method in class ome.xml.model.Image

asXMLElement(Document, Element) - Method in class ome.xml.model.Image

asXMLElement(Document) - Method in class ome.xml.model.ImageRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ImageRef

asXMLElement(Document) - Method in class ome.xml.model.ImagingEnvironment

asXMLElement(Document, Element) - Method in class ome.xml.model.ImagingEnvironment

asXMLElement(Document) - Method in class ome.xml.model.Instrument

asXMLElement(Document, Element) - Method in class ome.xml.model.Instrument

asXMLElement(Document) - Method in class ome.xml.model.InstrumentRef

asXMLElement(Document, Element) - Method in class ome.xml.model.InstrumentRef

asXMLElement(Document) - Method in class ome.xml.model.Label

asXMLElement(Document, Element) - Method in class ome.xml.model.Label

asXMLElement(Document) - Method in class ome.xml.model.Laser

asXMLElement(Document, Element) - Method in class ome.xml.model.Laser

asXMLElement(Document) - Method in class ome.xml.model.Leader

asXMLElement(Document, Element) - Method in class ome.xml.model.Leader

asXMLElement(Document) - Method in class ome.xml.model.LightEmittingDiode

asXMLElement(Document, Element) - Method in class ome.xml.model.LightEmittingDiode

asXMLElement(Document) - Method in class ome.xml.model.LightPath

asXMLElement(Document, Element) - Method in class ome.xml.model.LightPath

asXMLElement(Document, Element) - Method in class ome.xml.model.LightSource

asXMLElement(Document) - Method in class ome.xml.model.LightSourceSettings

asXMLElement(Document, Element) - Method in class ome.xml.model.LightSourceSettings

asXMLElement(Document) - Method in class ome.xml.model.Line

asXMLElement(Document, Element) - Method in class ome.xml.model.Line

asXMLElement(Document) - Method in class ome.xml.model.ListAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.ListAnnotation

asXMLElement(Document) - Method in class ome.xml.model.LongAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.LongAnnotation

asXMLElement(Document) - Method in class ome.xml.model.ManufacturerSpec

asXMLElement(Document, Element) - Method in class ome.xml.model.ManufacturerSpec

asXMLElement(Document) - Method in class ome.xml.model.Map

asXMLElement(Document, Element) - Method in class ome.xml.model.Map

asXMLElement(Document) - Method in class ome.xml.model.MapAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.MapAnnotation

asXMLElement(Document) - Method in class ome.xml.model.MapPairs

asXMLElement(Document, Element) - Method in class ome.xml.model.MapPairs

asXMLElement(Document) - Method in class ome.xml.model.Mask

asXMLElement(Document, Element) - Method in class ome.xml.model.Mask

asXMLElement(Document) - Method in class ome.xml.model.MetadataOnly

asXMLElement(Document, Element) - Method in class ome.xml.model.MetadataOnly

asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulation

asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulation

asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulationRef

asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulationRef

asXMLElement(Document) - Method in class ome.xml.model.Microscope

asXMLElement(Document, Element) - Method in class ome.xml.model.Microscope

asXMLElement(Document) - Method in class ome.xml.model.NumericAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.NumericAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Objective

asXMLElement(Document, Element) - Method in class ome.xml.model.Objective

asXMLElement(Document) - Method in class ome.xml.model.ObjectiveSettings

asXMLElement(Document, Element) - Method in class ome.xml.model.ObjectiveSettings

asXMLElement(Document) - Method in class ome.xml.model.OME

asXMLElement(Document, Element) - Method in class ome.xml.model.OME

asXMLElement(Document) - Method in interface ome.xml.model.OMEModelObject

Takes the entire object hierarchy and produces an XML DOM tree.

asXMLElement(Document) - Method in class ome.xml.model.Pixels

asXMLElement(Document, Element) - Method in class ome.xml.model.Pixels

asXMLElement(Document) - Method in class ome.xml.model.Plane

asXMLElement(Document, Element) - Method in class ome.xml.model.Plane

asXMLElement(Document) - Method in class ome.xml.model.Plate

asXMLElement(Document, Element) - Method in class ome.xml.model.Plate

asXMLElement(Document) - Method in class ome.xml.model.PlateAcquisition

asXMLElement(Document, Element) - Method in class ome.xml.model.PlateAcquisition

asXMLElement(Document) - Method in class ome.xml.model.PlateRef

asXMLElement(Document, Element) - Method in class ome.xml.model.PlateRef

asXMLElement(Document) - Method in class ome.xml.model.Point

asXMLElement(Document, Element) - Method in class ome.xml.model.Point

asXMLElement(Document) - Method in class ome.xml.model.Polygon

asXMLElement(Document, Element) - Method in class ome.xml.model.Polygon

asXMLElement(Document) - Method in class ome.xml.model.Polyline

asXMLElement(Document, Element) - Method in class ome.xml.model.Polyline

asXMLElement(Document) - Method in class ome.xml.model.Project

asXMLElement(Document, Element) - Method in class ome.xml.model.Project

asXMLElement(Document) - Method in class ome.xml.model.ProjectRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ProjectRef

asXMLElement(Document) - Method in class ome.xml.model.Pump

asXMLElement(Document, Element) - Method in class ome.xml.model.Pump

asXMLElement(Document) - Method in class ome.xml.model.Reagent

asXMLElement(Document, Element) - Method in class ome.xml.model.Reagent

asXMLElement(Document) - Method in class ome.xml.model.ReagentRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ReagentRef

asXMLElement(Document) - Method in class ome.xml.model.Rectangle

asXMLElement(Document, Element) - Method in class ome.xml.model.Rectangle

asXMLElement(Document) - Method in class ome.xml.model.Reference

asXMLElement(Document, Element) - Method in class ome.xml.model.Reference

asXMLElement(Document) - Method in class ome.xml.model.Rights

asXMLElement(Document, Element) - Method in class ome.xml.model.Rights

asXMLElement(Document) - Method in class ome.xml.model.ROI

asXMLElement(Document, Element) - Method in class ome.xml.model.ROI

asXMLElement(Document) - Method in class ome.xml.model.ROIRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ROIRef

asXMLElement(Document) - Method in class ome.xml.model.Screen

asXMLElement(Document, Element) - Method in class ome.xml.model.Screen

asXMLElement(Document) - Method in class ome.xml.model.Settings

asXMLElement(Document, Element) - Method in class ome.xml.model.Settings

asXMLElement(Document, Element) - Method in class ome.xml.model.Shape

asXMLElement(Document) - Method in class ome.xml.model.StageLabel

asXMLElement(Document, Element) - Method in class ome.xml.model.StageLabel

asXMLElement(Document) - Method in class ome.xml.model.StructuredAnnotations

asXMLElement(Document, Element) - Method in class ome.xml.model.StructuredAnnotations

asXMLElement(Document) - Method in class ome.xml.model.TagAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TagAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TermAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TermAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TextAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TextAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TiffData

asXMLElement(Document, Element) - Method in class ome.xml.model.TiffData

asXMLElement(Document) - Method in class ome.xml.model.TimestampAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TimestampAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TransmittanceRange

asXMLElement(Document, Element) - Method in class ome.xml.model.TransmittanceRange

asXMLElement(Document) - Method in class ome.xml.model.TypeAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TypeAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Union

asXMLElement(Document, Element) - Method in class ome.xml.model.Union

asXMLElement(Document) - Method in class ome.xml.model.UUID

asXMLElement(Document, Element) - Method in class ome.xml.model.UUID

asXMLElement(Document) - Method in class ome.xml.model.Well

asXMLElement(Document, Element) - Method in class ome.xml.model.Well

asXMLElement(Document) - Method in class ome.xml.model.WellSample

asXMLElement(Document, Element) - Method in class ome.xml.model.WellSample

asXMLElement(Document) - Method in class ome.xml.model.WellSampleRef

asXMLElement(Document, Element) - Method in class ome.xml.model.WellSampleRef

asXMLElement(Document) - Method in class ome.xml.model.XMLAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.XMLAnnotation

AT - Static variable in class loci.formats.in.DicomReader

atEOD() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

aTile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The raster for a destination tile

ATM - Static variable in class ome.units.UNITS

attachCompanionFiles() - Method in class loci.formats.in.DicomReader

DICOM datasets produced by: http://www.ct-imaging.de/index.php/en/ct-systeme-e/mikro-ct-e.html contain a bunch of extra metadata and log files.

attachListeners(List<TextField>, List<Panel>) - Method in class loci.plugins.in.ColorDialog

attachment - Variable in class loci.formats.in.ZeissCZIReader.Attachment

attachment - Variable in class loci.formats.in.ZeissCZIReader.Metadata

attachmentData - Variable in class loci.formats.in.ZeissCZIReader.Attachment

attachmentDirectoryPosition - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

attachmentSize - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

attenuation - Variable in class loci.formats.in.ZeissLSMReader.IlluminationChannel

attenuation - Variable in class ome.xml.model.LightSourceSettings

ATTO(Unit<T>) - Static method in class ome.units.UNITS

attr(Element, String) - Method in class loci.formats.in.PrairieMetadata

Gets the attribute value with the given name, or null if not defined.

ATTR_NAME - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

ATTR_NAME_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer

ATTR_NAME_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer

ATTR_VALUE_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer

ATTR_VALUE_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer

attributeList - Variable in class loci.formats.services.NetCDFServiceImpl

attributeNames - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

attrInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

AttrPtg - Class in loci.poi.hssf.record.formula

"Special Attributes" This seems to be a Misc Stuff and Junk record.

AttrPtg() - Constructor for class loci.poi.hssf.record.formula.AttrPtg

AttrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AttrPtg

authenticationCodes - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

author - Variable in class loci.poi.hssf.usermodel.HSSFComment

auto - Variable in class loci.poi.hssf.record.LineFormatRecord

autoBackground - Variable in class loci.poi.hssf.record.TextRecord

autobreaks - Static variable in class loci.poi.hssf.record.WSBoolRecord

autoColor - Variable in class loci.poi.hssf.record.TextRecord

autoContinue - Variable in class loci.poi.hssf.record.RecordInputStream

AUTOEXPOSURE - Static variable in class loci.formats.in.CellSensReader

autofill - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

autoGeneratedText - Variable in class loci.poi.hssf.record.TextRecord

autoLabelDeleted - Variable in class loci.poi.hssf.record.TextRecord

autoline - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

automatic - Variable in class loci.poi.hssf.record.AreaFormatRecord

AUTOMATIC - Static variable in class loci.poi.hssf.record.CalcModeRecord

automatically calculate formulas (1)

AUTOMATIC_EXCEPT_TABLES - Static variable in class loci.poi.hssf.record.CalcModeRecord

automatically calculate formulas except for tables (-1)

automaticCategoryCrossing - Variable in class loci.poi.hssf.record.ValueRangeRecord

automaticMajor - Variable in class loci.poi.hssf.record.ValueRangeRecord

automaticMaximum - Variable in class loci.poi.hssf.record.ValueRangeRecord

automaticMinimum - Variable in class loci.poi.hssf.record.ValueRangeRecord

automaticMinor - Variable in class loci.poi.hssf.record.ValueRangeRecord

autoPlotArea - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

autoPosition - Variable in class loci.poi.hssf.record.FrameRecord

autoPosition - Variable in class loci.poi.hssf.record.LegendRecord

autorotate - Variable in class loci.poi.hssf.record.TickRecord

autoscale(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Perform autoscaling on the given BufferedImage.

autoscale(BufferedImage, int, int) - Static method in class loci.formats.gui.AWTImageTools

Perform autoscaling on the given BufferedImage; map min to 0 and max to 255.

autoscale(byte[], int, int, int, boolean) - Static method in class loci.formats.ImageTools

Perform autoscaling on the given byte array; map min to 0 and max to 255.

autoscaleBox - Variable in class loci.plugins.in.MainDialog

autoSeries - Variable in class loci.poi.hssf.record.LegendRecord

autoSize - Variable in class loci.poi.hssf.record.FrameRecord

autoSizeColumn(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Adjusts the column width to fit the contents.

autoTextBackground - Variable in class loci.poi.hssf.record.TickRecord

autoTextColor - Variable in class loci.poi.hssf.record.TickRecord

autoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

autoUpdate - Variable in class loci.formats.cache.Cache

Whether the cache should automatically update when a parameter changes.

autoXPositioning - Variable in class loci.poi.hssf.record.LegendRecord

autoYPositioning - Variable in class loci.poi.hssf.record.LegendRecord

AV - Static variable in class ome.units.UNITS

available() - Method in class loci.common.NIOInputStream

available() - Method in class loci.common.RandomAccessInputStream

available() - Method in class loci.formats.in.APNGReader.PNGInputStream

available() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Returns the number of bytes that can be read (or skipped over) from this input stream without blocking by the next caller of a method for this input stream.

available() - Method in class loci.poi.util.BlockingInputStream

availMem - Variable in class loci.plugins.in.MemoryDialog

Remaining memory for the JVM.

avbits - Variable in class jj2000.j2k.codestream.writer.BitOutputBuffer

The number of available bits in the current byte

AVERAGE - Static variable in class loci.formats.in.APNGReader

AVERAGING - Static variable in class loci.formats.in.CellSensReader

AVI_MAGIC_STRING - Static variable in class loci.formats.in.AVIReader

AVIReader - Class in loci.formats.in

AVIReader is the file format reader for AVI files.

AVIReader() - Constructor for class loci.formats.in.AVIReader

Constructs a new AVI reader.

AVIWriter - Class in loci.formats.out

AVIWriter is the file format writer for AVI files.

AVIWriter() - Constructor for class loci.formats.out.AVIWriter

avoidUndeclaredNamespaces(String) - Static method in class loci.common.xml.XMLTools

Replaces NS:tag with NS_tag for undeclared namespaces

AW - Static variable in class ome.units.UNITS

AWTImageTools - Class in loci.formats.gui

A utility class with convenience methods for manipulating images in BufferedImage form.

AWTImageTools() - Constructor for class loci.formats.gui.AWTImageTools

ax - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The horizontal coordinate of the image origin in the canvas system, on the reference grid.

axis - Variable in class loci.formats.gui.CacheIndicator

AXIS_TYPE_AXIS_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AXIS_TYPE_CATEGORY_OR_X_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord

AXIS_TYPE_MAIN - Static variable in class loci.poi.hssf.record.AxisParentRecord

AXIS_TYPE_MAJOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AXIS_TYPE_MINOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AXIS_TYPE_SECONDARY - Static variable in class loci.poi.hssf.record.AxisParentRecord

AXIS_TYPE_SERIES_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord

AXIS_TYPE_VALUE_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord

AXIS_TYPE_WALLS_OR_FLOOR - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AxisGuesser - Class in loci.formats

AxisGuesser guesses which blocks in a file pattern correspond to which dimensional axes (Z, T or C), potentially recommending an adjustment in dimension order within the files, depending on the confidence of each guess.

AxisGuesser(FilePattern, String, int, int, int, boolean) - Constructor for class loci.formats.AxisGuesser

Guesses dimensional axis assignments corresponding to the given file pattern, using the specified dimensional information from within each file as a guide.

AxisLineFormatRecord - Class in loci.poi.hssf.record

The axis line format record defines the axis type details.

AxisLineFormatRecord() - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord

AxisLineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord

Constructs a AxisLineFormat record and sets its fields appropriately.

AxisOptionsRecord - Class in loci.poi.hssf.record

The axis options record provides unit information and other various tidbits about the axis.

AxisOptionsRecord() - Constructor for class loci.poi.hssf.record.AxisOptionsRecord

AxisOptionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisOptionsRecord

Constructs a AxisOptions record and sets its fields appropriately.

AxisParentRecord - Class in loci.poi.hssf.record

The axis size and location NOTE: This source is automatically generated please do not modify this file.

AxisParentRecord() - Constructor for class loci.poi.hssf.record.AxisParentRecord

AxisParentRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisParentRecord

Constructs a AxisParent record and sets its fields appropriately.

AxisRecord - Class in loci.poi.hssf.record

The axis record defines the type of an axis.

AxisRecord() - Constructor for class loci.poi.hssf.record.AxisRecord

AxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisRecord

Constructs a Axis record and sets its fields appropriately.

axisTypes - Variable in class loci.formats.AxisGuesser

Guessed axis types.

AxisUsedRecord - Class in loci.poi.hssf.record

The number of axes used on a chart.

AxisUsedRecord() - Constructor for class loci.poi.hssf.record.AxisUsedRecord

AxisUsedRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisUsedRecord

Constructs a AxisUsed record and sets its fields appropriately.

ay - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The vertical coordinate of the image origin in the canvas system, on the reference grid.

B

b - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The last byte read

b - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The last encoded byte of data

b(String) - Method in class loci.formats.in.PrairieMetadata

Converts the given string to a boolean.

ba - Variable in class mdbtools.libmdb.Holder

BACK_MASK - Static variable in class loci.common.RandomAccessInputStream

Various bitmasks for the 0000xxxx side of a byte.

BACK_MASK - Static variable in class loci.formats.codec.BitBuffer

Deprecated.

Various bitmasks for the 0000xxxx side of a byte.

backend - Class in mdbtools.libmdb

backend() - Constructor for class mdbtools.libmdb.backend

backend_name - Variable in class mdbtools.libmdb.MdbFile

backend_name - Variable in class mdbtools.libmdb.MdbHandle

background - Variable in class loci.poi.hssf.usermodel.EscherGraphics

BACKGROUND_TABLE - Static variable in class loci.formats.in.LiFlimReader

backgroundC - Variable in class loci.formats.in.LiFlimReader

backgroundColor - Variable in class loci.formats.in.CellSensReader

backgroundColorIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

backgroundDatatype - Variable in class loci.formats.in.LiFlimReader

backgroundF - Variable in class loci.formats.in.LiFlimReader

backgroundP - Variable in class loci.formats.in.LiFlimReader

backgroundT - Variable in class loci.formats.in.LiFlimReader

backgroundX - Variable in class loci.formats.in.LiFlimReader

backgroundY - Variable in class loci.formats.in.LiFlimReader

backgroundZ - Variable in class loci.formats.in.LiFlimReader

backingBuffer - Variable in class loci.tests.testng.ConversionTest.Plane

backingSet - Variable in class ome.xml.model.ReferenceList

backupHandler - Variable in class loci.formats.in.NativeND2Reader

backuppos - Variable in class loci.poi.hssf.model.WorkbookRecordList

BackupRecord - Class in loci.poi.hssf.record

Title: Backup Record

BackupRecord() - Constructor for class loci.poi.hssf.record.BackupRecord

BackupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BackupRecord

Constructs a BackupRecord and sets its fields appropriately

BACKWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy

backwardsStage - Variable in class loci.formats.in.DeltavisionReader

Whether or not the stage moved backwards.

BAD_DATE - Static variable in class loci.poi.hssf.usermodel.HSSFDateUtil

badFontHeight - Static variable in class loci.poi.hssf.record.RowRecord

bais - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader

The byte array that is the source of data if the PktHeaderBitReader is instantiated with a buffer instead of a RandomAccessIO

bak_lblock - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The saved base number of bits for sending code-block length information.

bak_prevtIdxs - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The saved last encoded truncation point for each code-block.

baknBytes - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Backup of the number of bytes allocated to each tile.

bandOffsets - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

bandsPresent - Variable in class ome.jxr.parser.DatastreamParser

bandStride - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The strides for pixel, band, and scanline.

bankData - Variable in class loci.formats.gui.SignedByteBuffer

bankData - Variable in class loci.formats.gui.UnsignedIntBuffer

baos - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

baos - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The ByteArrayOutputStream to store header data.

BAR - Static variable in class ome.units.UNITS

barcode - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection

barr - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Buffer for the 3 components of each pixel(in the current block)

BarRecord - Class in loci.poi.hssf.record

The bar record is used to define a bar chart.

BarRecord() - Constructor for class loci.poi.hssf.record.BarRecord

BarRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BarRecord

Constructs a Bar record and sets its fields appropriately.

barrierFilter - Variable in class loci.formats.in.FV1000Reader.ChannelData

base - Variable in class loci.common.CBZip2InputStream.Data

base - Variable in class loci.formats.ClassList

Base class to which all classes are assignable.

base64Alphabet - Static variable in class loci.formats.codec.Base64Codec

Base64Codec - Class in loci.formats.codec

Implements encoding (compress) and decoding (decompress) methods for Base64.

Base64Codec() - Constructor for class loci.formats.codec.Base64Codec

BASE_BLOCK_SIZE - Static variable in class loci.common.CBZip2InputStream

BASE_OFFSET - Static variable in class loci.formats.in.BioRadGelReader

BaseCodec - Class in loci.formats.codec

BaseCodec contains default implementation and testing for classes implementing the Codec interface, and acts as a base class for any of the compression classes.

BaseCodec() - Constructor for class loci.formats.codec.BaseCodec

baseConfigName - Static variable in class loci.tests.testng.TestTools

basedir - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo

BaseHandler - Class in loci.common.xml

Top-level SAX handler.

BaseHandler() - Constructor for class loci.common.xml.BaseHandler

BASELINE_CLAMP - Static variable in class loci.formats.in.FluoviewReader

BASELINE_OFFSET - Static variable in class loci.formats.in.FluoviewReader

BASELINE_OFFSET_CLAMP - Static variable in class loci.formats.in.CellSensReader

BaselineTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the set of tags found in the baseline TIFF specification as well as some common additional tags.

BaselineTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

BaselineTIFFTagSet.Artist - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Artist() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Artist

BaselineTIFFTagSet.BitsPerSample - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.BitsPerSample() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.BitsPerSample

BaselineTIFFTagSet.CellLength - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.CellLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.CellLength

BaselineTIFFTagSet.CellWidth - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.CellWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.CellWidth

BaselineTIFFTagSet.ColorMap - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ColorMap() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ColorMap

BaselineTIFFTagSet.Compression - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Compression() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Compression

BaselineTIFFTagSet.Copyright - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Copyright() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Copyright

BaselineTIFFTagSet.DateTime - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.DateTime() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.DateTime

BaselineTIFFTagSet.DocumentName - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.DocumentName() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.DocumentName

BaselineTIFFTagSet.DotRange - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.DotRange() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.DotRange

BaselineTIFFTagSet.ExtraSamples - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ExtraSamples() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ExtraSamples

BaselineTIFFTagSet.FillOrder - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.FillOrder() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.FillOrder

BaselineTIFFTagSet.FreeByteCounts - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.FreeByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.FreeByteCounts

BaselineTIFFTagSet.FreeOffsets - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.FreeOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.FreeOffsets

BaselineTIFFTagSet.GrayResponseCurve - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.GrayResponseCurve() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.GrayResponseCurve

BaselineTIFFTagSet.GrayResponseUnit - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.GrayResponseUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.GrayResponseUnit

BaselineTIFFTagSet.HalftoneHints - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.HalftoneHints() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.HalftoneHints

BaselineTIFFTagSet.HostComputer - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.HostComputer() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.HostComputer

BaselineTIFFTagSet.ICCProfile - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ICCProfile() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ICCProfile

BaselineTIFFTagSet.ImageDescription - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ImageDescription() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageDescription

BaselineTIFFTagSet.ImageLength - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ImageLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageLength

BaselineTIFFTagSet.ImageWidth - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ImageWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageWidth

BaselineTIFFTagSet.InkNames - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.InkNames() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.InkNames

BaselineTIFFTagSet.InkSet - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.InkSet() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.InkSet

BaselineTIFFTagSet.JPEGACTables - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGACTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGACTables

BaselineTIFFTagSet.JPEGDCTables - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGDCTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGDCTables

BaselineTIFFTagSet.JPEGInterchangeFormat - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGInterchangeFormat() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGInterchangeFormat

BaselineTIFFTagSet.JPEGInterchangeFormatLength - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGInterchangeFormatLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGInterchangeFormatLength

BaselineTIFFTagSet.JPEGLosslessPredictors - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGLosslessPredictors() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGLosslessPredictors

BaselineTIFFTagSet.JPEGPointTransforms - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGPointTransforms() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGPointTransforms

BaselineTIFFTagSet.JPEGProc - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGProc() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGProc

BaselineTIFFTagSet.JPEGQTables - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGQTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGQTables

BaselineTIFFTagSet.JPEGRestartInterval - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGRestartInterval() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGRestartInterval

BaselineTIFFTagSet.JPEGTables - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGTables

BaselineTIFFTagSet.Make - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Make() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Make

BaselineTIFFTagSet.MaxSampleValue - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.MaxSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.MaxSampleValue

BaselineTIFFTagSet.MinSampleValue - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.MinSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.MinSampleValue

BaselineTIFFTagSet.Model - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Model() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Model

BaselineTIFFTagSet.NewSubfileType - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.NewSubfileType() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.NewSubfileType

BaselineTIFFTagSet.NumberOfInks - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.NumberOfInks() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.NumberOfInks

BaselineTIFFTagSet.Orientation - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Orientation() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Orientation

BaselineTIFFTagSet.PageName - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PageName() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PageName

BaselineTIFFTagSet.PageNumber - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PageNumber() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PageNumber

BaselineTIFFTagSet.PhotometricInterpretation - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PhotometricInterpretation() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PhotometricInterpretation

BaselineTIFFTagSet.PlanarConfiguration - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PlanarConfiguration() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PlanarConfiguration

BaselineTIFFTagSet.Predictor - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Predictor() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Predictor

BaselineTIFFTagSet.PrimaryChromaticities - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PrimaryChromaticities() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PrimaryChromaticities

BaselineTIFFTagSet.ReferenceBlackWhite - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ReferenceBlackWhite() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ReferenceBlackWhite

BaselineTIFFTagSet.ResolutionUnit - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ResolutionUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ResolutionUnit

BaselineTIFFTagSet.RowsPerStrip - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.RowsPerStrip() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.RowsPerStrip

BaselineTIFFTagSet.SampleFormat - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SampleFormat() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SampleFormat

BaselineTIFFTagSet.SamplesPerPixel - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SamplesPerPixel() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SamplesPerPixel

BaselineTIFFTagSet.SMaxSampleValue - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SMaxSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SMaxSampleValue

BaselineTIFFTagSet.SMinSampleValue - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SMinSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SMinSampleValue

BaselineTIFFTagSet.Software - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Software() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Software

BaselineTIFFTagSet.StripByteCounts - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.StripByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.StripByteCounts

BaselineTIFFTagSet.StripOffsets - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.StripOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.StripOffsets

BaselineTIFFTagSet.SubfileType - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SubfileType() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SubfileType

BaselineTIFFTagSet.T4Options - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.T4Options() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.T4Options

BaselineTIFFTagSet.T6Options - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.T6Options() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.T6Options

BaselineTIFFTagSet.TargetPrinter - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TargetPrinter() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TargetPrinter

BaselineTIFFTagSet.Threshholding - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Threshholding() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Threshholding

BaselineTIFFTagSet.TileByteCounts - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TileByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileByteCounts

BaselineTIFFTagSet.TileLength - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TileLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileLength

BaselineTIFFTagSet.TileOffsets - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TileOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileOffsets

BaselineTIFFTagSet.TileWidth - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TileWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileWidth

BaselineTIFFTagSet.TransferFunction - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TransferFunction() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TransferFunction

BaselineTIFFTagSet.TransferRange - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TransferRange() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TransferRange

BaselineTIFFTagSet.WhitePoint - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.WhitePoint() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.WhitePoint

BaselineTIFFTagSet.XPosition - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.XPosition() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.XPosition

BaselineTIFFTagSet.XResolution - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.XResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.XResolution

BaselineTIFFTagSet.YCbCrCoefficients - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YCbCrCoefficients() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrCoefficients

BaselineTIFFTagSet.YCbCrPositioning - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YCbCrPositioning() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrPositioning

BaselineTIFFTagSet.YCbCrSubSampling - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YCbCrSubSampling() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrSubSampling

BaselineTIFFTagSet.YPosition - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YPosition() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YPosition

BaselineTIFFTagSet.YResolution - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YResolution

BaseMetadata - Interface in loci.formats.meta

BaseMetadata - Interface in ome.xml.meta

A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.

basename - Variable in class loci.formats.in.ZeissTIFFHandler.Plane

baseReader - Variable in class loci.plugins.in.ImportProcess

baseTiff - Variable in class loci.formats.in.MicromanagerReader.Position

BaseTiffReader - Class in loci.formats.in

BaseTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.

BaseTiffReader(String, String) - Constructor for class loci.formats.in.BaseTiffReader

Constructs a new BaseTiffReader.

BaseTiffReader(String, String[]) - Constructor for class loci.formats.in.BaseTiffReader

Constructs a new BaseTiffReader.

BaseZeissReader - Class in loci.formats.in

BaseZeissReader contains common functionality required by readers for Zeiss AxioVision formats.

BaseZeissReader(String, String) - Constructor for class loci.formats.in.BaseZeissReader

Constructs a new ZeissZVI reader.

BaseZeissReader(String, String[]) - Constructor for class loci.formats.in.BaseZeissReader

Constructs a new ZeissZVI reader.

BaseZeissReader.Charset - Enum in loci.formats.in

BaseZeissReader.Charset(int, String) - Constructor for enum loci.formats.in.BaseZeissReader.Charset

BaseZeissReader.Context - Enum in loci.formats.in

BaseZeissReader.Context() - Constructor for enum loci.formats.in.BaseZeissReader.Context

BaseZeissReader.DrawStyle - Enum in loci.formats.in

Line drawing styles.

BaseZeissReader.DrawStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.DrawStyle

BaseZeissReader.FeatureType - Enum in loci.formats.in

Feature types.

BaseZeissReader.FeatureType(int, int) - Constructor for enum loci.formats.in.BaseZeissReader.FeatureType

BaseZeissReader.FillStyle - Enum in loci.formats.in

Fill styles.

BaseZeissReader.FillStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.FillStyle

BaseZeissReader.Layer - Class in loci.formats.in

Layer class representing an AxioVision layer; used to contain a collection of shapes.

BaseZeissReader.Layer() - Constructor for class loci.formats.in.BaseZeissReader.Layer

BaseZeissReader.LineEndPositions - Enum in loci.formats.in

BaseZeissReader.LineEndPositions(int) - Constructor for enum loci.formats.in.BaseZeissReader.LineEndPositions

BaseZeissReader.LineEndStyle - Enum in loci.formats.in

Line ending styles.

BaseZeissReader.LineEndStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.LineEndStyle

BaseZeissReader.PointStyle - Enum in loci.formats.in

Point styles.

BaseZeissReader.PointStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.PointStyle

BaseZeissReader.Shape - Class in loci.formats.in

Shape class representing the metadata within an AxioVision Shape ROI

BaseZeissReader.Shape() - Constructor for class loci.formats.in.BaseZeissReader.Shape

BaseZeissReader.Tag - Class in loci.formats.in

Content of a single tag from a Tags block.

BaseZeissReader.Tag(int, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag

Constructor.

BaseZeissReader.Tag(int, String, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag

Constructor.

BaseZeissReader.TextAlignment - Enum in loci.formats.in

BaseZeissReader.TextAlignment(int) - Constructor for enum loci.formats.in.BaseZeissReader.TextAlignment

BasicAnnotation - Class in ome.xml.model

BasicAnnotation() - Constructor for class ome.xml.model.BasicAnnotation

Default constructor.

BasicAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BasicAnnotation

Constructs BasicAnnotation recursively from an XML DOM tree.

BasicAnnotation(BasicAnnotation) - Constructor for class ome.xml.model.BasicAnnotation

Copy constructor.

BATBlock - Class in loci.poi.poifs.storage

A block of block allocation table entries.

BATBlock(int) - Constructor for class loci.poi.poifs.storage.BATBlock

Create a single instance initialized with default values

BATBlock(int[], int, int, int) - Constructor for class loci.poi.poifs.storage.BATBlock

Create a single instance initialized (perhaps partially) with entries

BATManaged - Interface in loci.poi.poifs.filesystem

This interface defines behaviors for objects managed by the Block Allocation Table (BAT).

batsInHeader - Variable in class loci.poi.poifs.storage.HeaderBlockReader

baxcel - Variable in class loci.poi.hssf.record.formula.AttrPtg

bayerPattern - Variable in class loci.formats.in.MRWReader

bbox - Variable in class loci.formats.in.CellH5Reader

BBOX - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

bBox - Variable in class loci.formats.services.WlzServiceImpl

bbuf - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader

The current bit buffer

bbuf - Variable in class jj2000.j2k.entropy.decoder.ByteToBitInput

The bit buffer

bbuf - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

The bit buffer

BDReader - Class in loci.formats.in

BDReader is the file format reader for BD Pathway datasets.

BDReader() - Constructor for class loci.formats.in.BDReader

Constructs a new ScanR reader.

BEAM_SPLITTER_FILTER - Static variable in class loci.formats.in.ZeissLSMReader

BEAM_SPLITTER_FILTER_SET - Static variable in class loci.formats.in.ZeissLSMReader

BEBufferedRandomAccessFile - Class in jj2000.j2k.io

This class defines a Buffered Random Access File, where all I/O is considered to be big-endian, and extends the BufferedRandomAccessFile class.

BEBufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

BEBufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

BEBufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

BEBufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

beforeRecordSerialize(int, short, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener

Fired before a given escher record is serialized.

beforeRecordSerialize(int, short, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener

begin - Variable in class loci.formats.FilePatternBlock

beginDecoding() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

This routine is called prior to a sequence of calls to the decode method, in order to allow any necessary tables or other structures to be initialized based on metadata values.

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

Invokes the superclass method and then sets instance variables on the basis of the metadata set on this decompressor.

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

BeginRecord - Class in loci.poi.hssf.record

The begin record defines the start of a block of records for a (grpahing data object.

BeginRecord() - Constructor for class loci.poi.hssf.record.BeginRecord

BeginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BeginRecord

Constructs a BeginRecord record and sets its fields appropriately.

BETA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the second lifting step coefficient

BETA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the second lifting step coefficient

BEZIER_WITH_ARROW - Static variable in class loci.formats.in.ZeissLSMReader

BF - Class in loci.plugins

Miscellaneous plugins utility methods.

BF() - Constructor for class loci.plugins.BF

bf_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

output destination for bit codes

BFVirtualStack - Class in loci.plugins.util

Subclass of VirtualStack that uses Bio-Formats to read planes on demand.

BFVirtualStack(String, IFormatReader, boolean, boolean, boolean) - Constructor for class loci.plugins.util.BFVirtualStack

BGR - Static variable in class loci.formats.in.CellSensReader

BGR_24 - Static variable in class loci.formats.in.ZeissCZIReader

BGR_48 - Static variable in class loci.formats.in.ZeissCZIReader

BGR_FLOAT - Static variable in class loci.formats.in.ZeissCZIReader

BGRA_8 - Static variable in class loci.formats.in.ZeissCZIReader

bgrToRgb(byte[], boolean, int, int) - Static method in class loci.formats.ImageTools

BH_HEADER_CHKSUM - Static variable in class loci.formats.in.SDTInfo

BH_HEADER_NOT_VALID - Static variable in class loci.formats.in.SDTInfo

BH_HEADER_VALID - Static variable in class loci.formats.in.SDTInfo

bi - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The destination image.

bi - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

The destination image.

BI_BITFIELDS - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_JPEG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_PNG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_RLE4 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_RLE8 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BiffViewer - Class in loci.poi.hssf.dev

Utillity for reading in BIFF8 records and displaying data from them.

BiffViewer(String[]) - Constructor for class loci.poi.hssf.dev.BiffViewer

Creates new BiffViewer

BiffViewer.BiffviewRecordInputStream - Class in loci.poi.hssf.dev

BiffViewer.BiffviewRecordInputStream(InputStream) - Constructor for class loci.poi.hssf.dev.BiffViewer.BiffviewRecordInputStream

BiffViewer.RecordDetails - Class in loci.poi.hssf.dev

This record supports dumping of completed continue records.

BiffViewer.RecordDetails(short, short, int, Record) - Constructor for class loci.poi.hssf.dev.BiffViewer.RecordDetails

BIFormatReader - Class in loci.formats.in

BIFormatReader is the superclass for file format readers that use java.awt.image.BufferedImage as the native data type.

BIFormatReader(String, String) - Constructor for class loci.formats.in.BIFormatReader

Constructs a new BIFormatReader.

BIFormatReader(String, String[]) - Constructor for class loci.formats.in.BIFormatReader

Constructs a new BIFormatReader.

BIG - Static variable in class loci.formats.tiff.TiffConstants

BIG_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType

Identifier for big-endian byte ordering (i.e.

BIG_ENDIAN_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the BigEndian attribute.

BIG_SPOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

BIG_SPOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Large spots

BIG_TIFF - Static variable in class loci.formats.tiff.IFD

BIG_TIFF - Static variable in class loci.tests.testng.TiffWriterTest

The big tiff flags.

BIG_TIFF_BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants

The number of bytes in each IFD entry of a BigTIFF file.

BIG_TIFF_CUTOFF - Static variable in class loci.formats.out.TiffWriter

Number of bytes at which to automatically switch to BigTIFF This is approximately 3.9 GB instead of 4 GB, to allow space for the IFDs.

BIG_TIFF_MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants

BIG_TIFF_SUFFIXES - Static variable in class loci.formats.out.TiffWriter

BigBlock - Class in loci.poi.poifs.storage

BigBlock() - Constructor for class loci.poi.poifs.storage.BigBlock

bigBlocks - Variable in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

bigBlockSize - Variable in class loci.poi.poifs.eventfilesystem.POIFSReader

bigBlockSize - Variable in class loci.poi.poifs.filesystem.POIFSDocument

bigBlockSize - Variable in class loci.poi.poifs.filesystem.POIFSFileSystem

bigBlockSize - Variable in class loci.poi.poifs.storage.HeaderBlockWriter

bigBlockSize - Variable in class loci.poi.poifs.storage.RawDataBlockList

bigEndian - Variable in class ome.xml.model.BinData

bigEndian - Variable in class ome.xml.model.Pixels

bigEndianString - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

bigEndianTransferSyntax - Variable in class loci.formats.in.DicomReader

bigImage - Variable in class loci.tests.testng.OpenBytesPerformanceTest

bigTiff - Variable in class loci.formats.tiff.TiffParser

Whether or not the TIFF file contains BigTIFF data.

bigTiff - Variable in class loci.formats.tiff.TiffSaver

Whether or not to write BigTIFF data.

bin - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The wrapper to read bits for the packet heads

bin - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The bit based input for arithmetic coding bypass (i.e.

bin - Variable in class loci.formats.in.InCellReader

BIN_DATA_NS - Static variable in class ome.specification.XMLWriter

Identifies the BinData tag.

BIN_DATA_TAG - Static variable in class ome.specification.XMLWriter

Identifies the BinData tag.

BIN_NS - Static variable in class ome.specification.XMLWriter

The XML namespace.

binary - Variable in class loci.formats.in.EPSReader

Flag indicating binary data.

BINARY_SETUP - Static variable in class loci.formats.in.SDTInfo

BinaryDataInput - Interface in jj2000.j2k.io

This interface defines the input of binary data from streams and/or files.

BinaryDataOutput - Interface in jj2000.j2k.io

This interface defines the output of binary data to streams and/or files.

BinaryFile - Class in ome.xml.model

BinaryFile() - Constructor for class ome.xml.model.BinaryFile

Default constructor.

BinaryFile(Element, OMEModel) - Constructor for class ome.xml.model.BinaryFile

Constructs BinaryFile recursively from an XML DOM tree.

BinaryFile(BinaryFile) - Constructor for class ome.xml.model.BinaryFile

Copy constructor.

binaryFile - Variable in class ome.xml.model.FileAnnotation

BinaryOnly - Class in ome.xml.model

BinaryOnly() - Constructor for class ome.xml.model.BinaryOnly

Default constructor.

BinaryOnly(Element, OMEModel) - Constructor for class ome.xml.model.BinaryOnly

Constructs BinaryOnly recursively from an XML DOM tree.

BinaryOnly(BinaryOnly) - Constructor for class ome.xml.model.BinaryOnly

Copy constructor.

binaryOnly - Variable in class ome.xml.model.OME

BinaryTree - Class in loci.poi.util

Red-Black tree-based implementation of Map.

BinaryTree() - Constructor for class loci.poi.util.BinaryTree

Construct a new BinaryTree

BinaryTree(Map) - Constructor for class loci.poi.util.BinaryTree

Constructs a new BinaryTree from an existing Map, with keys and values sorted

BinaryTree.BinaryTreeIterator - Class in loci.poi.util

BinaryTree.BinaryTreeIterator(int) - Constructor for class loci.poi.util.BinaryTree.BinaryTreeIterator

Constructor

BinaryTree.Node - Class in loci.poi.util

BinaryTree.Node(Comparable, Comparable) - Constructor for class loci.poi.util.BinaryTree.Node

Make a new cell with given key and value, and with null links, and black (true) colors.

bind_ptr - Variable in class mdbtools.libmdb.MdbColumn

binData - Variable in class loci.formats.in.OMEXMLReader

binData - Variable in class ome.xml.model.BinaryFile

BinData - Class in ome.xml.model

BinData() - Constructor for class ome.xml.model.BinData

Default constructor.

BinData(Element, OMEModel) - Constructor for class ome.xml.model.BinData

Constructs BinData recursively from an XML DOM tree.

BinData(BinData) - Constructor for class ome.xml.model.BinData

Copy constructor.

binDataBlocks - Variable in class ome.xml.model.Mask

binDataBlocks - Variable in class ome.xml.model.Pixels

binDataOffsets - Variable in class loci.formats.in.OMEXMLReader

binning - Variable in class loci.formats.in.BDReader

binning - Variable in class loci.formats.in.BioRadSCNReader

binning - Variable in class loci.formats.in.MetamorphHandler

binning - Variable in class loci.formats.in.MetamorphReader

binning - Variable in class loci.formats.in.MicromanagerReader.Position

binning - Variable in class loci.formats.in.ND2Handler

binning - Variable in class loci.formats.in.PCIReader

binning - Variable in class loci.formats.in.SimplePCITiffReader

binning - Variable in class loci.formats.in.ZeissLSMReader

binning - Variable in class loci.formats.in.ZeissLSMReader.Recording

BINNING - Static variable in class ome.specification.XMLMockObjects

The default binning value.

binning - Variable in class ome.xml.model.DetectorSettings

Binning - Enum in ome.xml.model.enums

Binning(String) - Constructor for enum ome.xml.model.enums.Binning

BinningEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Binning.

BinningEnumHandler() - Constructor for class ome.xml.model.enums.handlers.BinningEnumHandler

binnings - Variable in class loci.formats.in.FlexReader

binnings - Variable in class loci.formats.in.ZeissCZIReader

binningX - Variable in class loci.formats.in.CellSensReader.Pyramid

binningY - Variable in class loci.formats.in.CellSensReader.Pyramid

binX - Variable in class loci.formats.in.FlexReader

Camera binning values.

binX - Variable in class loci.formats.in.IvisionReader

binY - Variable in class loci.formats.in.FlexReader

Camera binning values.

binY - Variable in class loci.formats.in.IvisionReader

BioFormatsExtensionPrinter - Class in loci.formats.tools

This class is used to generate a text file containing all of the image file extensions supported by Bio-Formats.

BioFormatsExtensionPrinter() - Constructor for class loci.formats.tools.BioFormatsExtensionPrinter

BioRadGelReader - Class in loci.formats.in

BioRadGelReader is the file format reader for Bio-Rad gel files.

BioRadGelReader() - Constructor for class loci.formats.in.BioRadGelReader

Constructs a new Bio-Rad gel reader.

BioRadReader - Class in loci.formats.in

BioRadReader is the file format reader for Bio-Rad PIC files.

BioRadReader() - Constructor for class loci.formats.in.BioRadReader

Constructs a new BioRadReader.

BioRadReader.BioRadHandler - Class in loci.formats.in

SAX handler for parsing XML.

BioRadReader.BioRadHandler() - Constructor for class loci.formats.in.BioRadReader.BioRadHandler

BioRadReader.Note - Class in loci.formats.in

BioRadReader.Note() - Constructor for class loci.formats.in.BioRadReader.Note

BioRadSCNReader - Class in loci.formats.in

BioRadSCNReader is the reader for Bio-Rad .scn files

BioRadSCNReader() - Constructor for class loci.formats.in.BioRadSCNReader

Constructs a new Bio-Rad .scn reader.

BioRadSCNReader.SCNHandler - Class in loci.formats.in

BioRadSCNReader.SCNHandler() - Constructor for class loci.formats.in.BioRadSCNReader.SCNHandler

biReader - Variable in class loci.formats.gui.DataConverter

bit - Variable in class loci.formats.codec.BitWriter

Deprecated.

Bit index into current byte of the buffer.

BIT - Static variable in class loci.formats.FormatTools

Identifies the BIT data type used to store pixel values.

BIT_DEPTH - Static variable in class loci.formats.in.CellSensReader

BitBuffer - Class in loci.formats.codec

Deprecated.

Use loci.common.RandomAccessInputStream instead

BitBuffer(byte[]) - Constructor for class loci.formats.codec.BitBuffer

Deprecated.

Default constructor.

bitDepth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

bitDepth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

bitDepth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

bitDepth - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

bitDepth - Variable in class loci.formats.in.CellSensReader.Pyramid

BitDepth - Enum in ome.jxr.image

Enumeration of available image bit depth types.

BitDepth(Integer...) - Constructor for enum ome.jxr.image.BitDepth

bitDepths - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Various bit depth

bitDepthScale - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

BitField - Class in loci.poi.util

Manage operations dealing with bit-mapped fields.

BitField(int) - Constructor for class loci.poi.util.BitField

Create a BitField instance

BitFieldFactory - Class in loci.poi.util

Returns immutable Btfield instances.

BitFieldFactory() - Constructor for class loci.poi.util.BitFieldFactory

BitFile - Class in com.sun.media.imageioimpl.common

Came from GIFEncoder initially.

BitFile(ImageOutputStream, boolean) - Constructor for class com.sun.media.imageioimpl.common.BitFile

bitmapFileSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

bitmapOffset - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

BITMASK_COMPRESSION - Static variable in class loci.formats.in.FlowSightReader

bitMasks - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

BitOutputBuffer - Class in jj2000.j2k.codestream.writer

This class implements a buffer for writing bits, with the required bit stuffing policy for the packet headers.

BitOutputBuffer() - Constructor for class jj2000.j2k.codestream.writer.BitOutputBuffer

Creates a new BitOutputBuffer width a buffer of length 'SZ_INIT'.

bitPointer - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

bitPos - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

bits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Output bit buffer.

bits - Variable in class loci.formats.in.TargaReader

bits - Variable in enum ome.jxr.ifd.PixelType

BITS_ALLOCATED - Static variable in class loci.formats.in.DicomReader

BITS_PER_COMPONENT_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

BITS_PER_SAMPLE - Static variable in class loci.formats.tiff.IFD

bitsLeft_ - Variable in class com.sun.media.imageioimpl.common.BitFile

BitsPerComponentBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Bits Per Component Box of JPEG JP2 file format.

BitsPerComponentBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Counstructs a BitsPerComponentBox from the provided byte array containing the bit depths of each color component.

BitsPerComponentBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Constructs a BitsPerComponentBox based on the provide org.w3c.dom.Node.

bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

bitsPerPixel - Variable in class loci.formats.CoreMetadata

Number of valid bits per pixel.

bitsPerPixel - Variable in class loci.formats.in.DicomReader

Bits per pixel.

bitsPerPixel - Variable in class loci.formats.in.NativeQTReader

Pixel depth.

bitsPerSample - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the BitsPerSample tag.

bitsPerSample - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

bitsPerSample - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

bitsPerSample - Variable in class loci.formats.codec.CodecOptions

Number of bits per channel.

bitsPerSampleCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

bitsPerScanline - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

bitsToGet - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

bitsToGet - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

BitstreamReaderAgent - Class in jj2000.j2k.codestream.reader

This is the generic interface for bit stream reader agents.

BitstreamReaderAgent(HeaderDecoder, DecoderSpecs) - Constructor for class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Initializes members of this class.

BitToByteOutput - Class in jj2000.j2k.entropy.encoder

This class provides an adapter to perform bit based output on byte based output objects that inherit from a 'ByteOutputBuffer' class.

BitToByteOutput(ByteOutputBuffer) - Constructor for class jj2000.j2k.entropy.encoder.BitToByteOutput

Instantiates a new 'BitToByteOutput' object that uses 'out' as the underlying byte based output.

BitWriter - Class in loci.formats.codec

Deprecated.

Use loci.common.RandomAccessOutputStream instead

BitWriter() - Constructor for class loci.formats.codec.BitWriter

Deprecated.

Constructs a new bit writer.

BitWriter(int) - Constructor for class loci.formats.codec.BitWriter

Deprecated.

Constructs a new bit writer with the given initial buffer size.

biWriter - Variable in class loci.formats.gui.DataConverter

bizarreMultichannelAcquisition - Variable in class loci.formats.in.MetamorphReader

BLACK - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

The CCITT numerical definition of black.

black - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

blank(byte[]) - Method in class loci.formats.in.PrairieReader

Blanks out and returns the given buffer.

blankImage(int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates a blank image with the given dimensions and transfer type.

BlankRecord - Class in loci.poi.hssf.record

Title: Blank cell record

BlankRecord() - Constructor for class loci.poi.hssf.record.BlankRecord

Creates a new instance of BlankRecord

BlankRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BlankRecord

Constructs a BlankRecord and sets its fields appropriately

blankThumbBytes - Variable in class loci.formats.FileStitcher.ExternalSeries

blip - Variable in class loci.poi.hssf.usermodel.HSSFPictureData

Underlying escher blip record containing the bitmap data.

BLIP__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties

BLIP__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties

BLIP__BLIPTODISPLAY - Static variable in class loci.poi.ddf.EscherProperties

BLIP__BRIGHTNESSSETTING - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CONTRASTSETTING - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMLEFT - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMRIGHT - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMTOP - Static variable in class loci.poi.ddf.EscherProperties

BLIP__DOUBLEMOD - Static variable in class loci.poi.ddf.EscherProperties

BLIP__GAMMA - Static variable in class loci.poi.ddf.EscherProperties

BLIP__NOHITTESTPICTURE - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREACTIVE - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREBILEVEL - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREFILLMOD - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREGRAY - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREID - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTURELINE - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PRINTBLIP - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PRINTBLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PRINTFLAGS - Static variable in class loci.poi.ddf.EscherProperties

BLIP__TRANSPARENTCOLOR - Static variable in class loci.poi.ddf.EscherProperties

BlkImgDataSrc - Interface in jj2000.j2k.image

This interface defines the methods to transfer image data in blocks, without following any particular order (random access).

block - Variable in class loci.formats.FilePatternBlock

String representation of this block.

block0 - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Block used to request component with index 0

block0 - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Block used to request component 0

block1 - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Block used to request component with index 1

block1 - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Block used to request component 1

block2 - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Block used to request component with index 2

block2 - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Block used to request component 2

BLOCK_END - Static variable in class loci.formats.FilePatternBlock

BLOCK_SIZE - Static variable in class loci.poi.hssf.record.DBCellRecord

BLOCK_START - Static variable in class loci.formats.FilePatternBlock

blockAligned - Variable in class jj2000.j2k.roi.encoder.ROIScaler

Flag indicating if block aligned ROIs are used

BlockAllocationTableReader - Class in loci.poi.poifs.storage

This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.

BlockAllocationTableReader(int, int[], int, int, BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader

create a BlockAllocationTableReader for an existing filesystem.

BlockAllocationTableReader(ListManagedBlock[], BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader

create a BlockAllocationTableReader from an array of raw data blocks

BlockAllocationTableReader() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader

Constructor BlockAllocationTableReader

BlockAllocationTableWriter - Class in loci.poi.poifs.storage

This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.

BlockAllocationTableWriter() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableWriter

create a BlockAllocationTableWriter

blockData - Variable in class loci.formats.in.ZeissLSMReader.SubBlock

BlockingInputStream - Class in loci.poi.util

Implementation of a BlockingInputStream to provide data to RawDataBlock that expects data in 512 byte chunks.

BlockingInputStream(InputStream) - Constructor for class loci.poi.util.BlockingInputStream

blockLength - Variable in class loci.formats.in.APNGReader.PNGInputStream

blockLength - Variable in class loci.formats.in.SDTInfo

reserved2 now contains block (set) length.

BlockList - Interface in loci.poi.poifs.storage

Interface for lists of blocks that are mapped by block allocation tables

BlockListImpl - Class in loci.poi.poifs.storage

A simple implementation of BlockList

BlockListImpl() - Constructor for class loci.poi.poifs.storage.BlockListImpl

Constructor BlockListImpl

blockNo - Variable in class loci.formats.in.SDTInfo

Number of the block in the file.

blockPointer - Variable in class loci.formats.in.APNGReader.PNGInputStream

blockRandomised - Variable in class loci.common.CBZip2InputStream

blocks - Variable in class loci.formats.FilePattern

List of pattern blocks for this file pattern.

blocks - Variable in class loci.formats.in.APNGReader

blocks_ - Variable in class com.sun.media.imageioimpl.common.BitFile

note this also indicates gif format BITFile.

blockSize - Variable in class loci.formats.in.GIFReader

Block size.

blockSize - Variable in class loci.formats.in.VolocityReader.Stack

blockSize - Variable in class loci.poi.poifs.storage.BATBlock

blockSize - Variable in class loci.poi.poifs.storage.DocumentBlock

blockSize - Variable in class loci.poi.poifs.storage.PropertyBlock

blockSize - Variable in class loci.poi.poifs.storage.RawDataBlock

blockSize100k - Variable in class loci.common.CBZip2InputStream

always: in the range 0 ..

blockType - Variable in class loci.formats.in.APNGReader.PNGInputStream

blockType - Variable in class loci.formats.in.SDTInfo

See blockType defines below.

BlockWritable - Interface in loci.poi.poifs.storage

An interface for persisting block storage of POIFS components.

blue - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

blue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blue - Variable in class loci.poi.hssf.record.PColor

blue - Variable in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

BLUE_GAIN - Static variable in class loci.formats.in.CellSensReader

BLUE_MIN - Static variable in class loci.plugins.in.Colorizer

BLUE_OFFSET - Static variable in class loci.formats.in.CellSensReader

BLUE_TO_GREEN_MIN - Static variable in class loci.plugins.in.Colorizer

blueGain - Variable in class loci.formats.in.CellSensReader.Pyramid

blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueOffset - Variable in class loci.formats.in.CellSensReader.Pyramid

blueOffset - Static variable in class org.libjpegturbo.turbojpeg.TJ

blueShort - Variable in class loci.formats.gui.Index16ColorModel

Lookup tables.

blueX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

BMP - Static variable in class loci.formats.in.CellSensReader

BMP_MAGIC_STRING - Static variable in class loci.formats.in.BMPReader

bmpBitsPerPixel - Variable in class loci.formats.in.AVIReader

bmpColorsUsed - Variable in class loci.formats.in.AVIReader

bmpCompression - Variable in class loci.formats.in.AVIReader

BMPConstants - Interface in com.sun.media.imageioimpl.plugins.bmp

BMPImageReader - Class in com.sun.media.imageioimpl.plugins.bmp

This class is the Java Image IO plugin reader for BMP images.

BMPImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Constructs BMPImageReader from the provided ImageReaderSpi.

BMPImageReader.EmbeddedProgressAdapter - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageReader.EmbeddedProgressAdapter() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

BMPImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

BMPImageWriteParam - Class in com.sun.media.imageio.plugins.bmp

A subclass of ImageWriteParam for encoding images in the BMP format.

BMPImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Constructs a BMPImageWriteParam set to use a given Locale and with default values for all parameters.

BMPImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Constructs an BMPImageWriteParam object with default values for all parameters and a null Locale.

BMPImageWriter - Class in com.sun.media.imageioimpl.plugins.bmp

The Java Image IO plugin writer for encoding a binary RenderedImage into a BMP format.

BMPImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

Constructs BMPImageWriter based on the provided ImageWriterSpi.

BMPImageWriter.IIOWriteProgressAdapter - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageWriter.IIOWriteProgressAdapter() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter

BMPImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

BMPMetadata - Class in com.sun.media.imageioimpl.plugins.bmp

BMPMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

BMPMetadata(IIOMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

BMPMetadataFormat - Class in com.sun.media.imageioimpl.plugins.bmp

BMPMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat

BMPMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.bmp

BMPMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources

BMPReader - Class in loci.formats.in

BMPReader is the file format reader for Microsoft Bitmap (BMP) files.

BMPReader() - Constructor for class loci.formats.in.BMPReader

Constructs a new BMP reader.

bmpScanLineSize - Variable in class loci.formats.in.AVIReader

bmpVersion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

bmpWidth - Variable in class loci.formats.in.AVIReader

bms - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

By-pass mode specifications

BOFRecord - Class in loci.poi.hssf.record

Title: Beginning Of File

BOFRecord() - Constructor for class loci.poi.hssf.record.BOFRecord

Constructs an empty BOFRecord with no fields set.

BOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BOFRecord

Constructs a BOFRecord and sets its fields appropriately

BogusColorSpace - Class in com.sun.media.imageioimpl.common

A dummy ColorSpace to enable ColorModel for image data which do not have an innate color representation.

BogusColorSpace(int) - Constructor for class com.sun.media.imageioimpl.common.BogusColorSpace

Constructs a bogus ColorSpace.

bold - Variable in class loci.formats.in.BaseZeissReader.Shape

BOLDWEIGHT_BOLD - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Bold boldness (bold)

BOLDWEIGHT_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Normal boldness (not bold)

book - Variable in class loci.poi.hssf.model.FormulaParser

book - Variable in class loci.poi.hssf.usermodel.HSSFCell

book - Variable in class loci.poi.hssf.usermodel.HSSFName

book - Variable in class loci.poi.hssf.usermodel.HSSFRichTextString

book - Variable in class loci.poi.hssf.usermodel.HSSFRow

reference to containing low level Workbook

book - Variable in class loci.poi.hssf.usermodel.HSSFSheet

BookBoolRecord - Class in loci.poi.hssf.record

Title: Save External Links record (BookBool)

BookBoolRecord() - Constructor for class loci.poi.hssf.record.BookBoolRecord

BookBoolRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BookBoolRecord

Constructs a BookBoolRecord and sets its fields appropriately

BOOLEAN - Static variable in class loci.formats.in.CellSensReader

BooleanAnnotation - Class in ome.xml.model

BooleanAnnotation() - Constructor for class ome.xml.model.BooleanAnnotation

Default constructor.

BooleanAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BooleanAnnotation

Constructs BooleanAnnotation recursively from an XML DOM tree.

BooleanAnnotation(BooleanAnnotation) - Constructor for class ome.xml.model.BooleanAnnotation

Copy constructor.

booleanAnnotations - Variable in class ome.xml.model.StructuredAnnotations

BooleanOption - Class in loci.plugins.prefs

A boolean option for one of the plugins.

BooleanOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.BooleanOption

Constructs a boolean option with the parameters from the given map.

BooleanOption(String, boolean, String, String, boolean) - Constructor for class loci.plugins.prefs.BooleanOption

Constructs a boolean option with the given parameters.

BoolErrRecord - Class in loci.poi.hssf.record

Creates new BoolErrRecord.

BoolErrRecord() - Constructor for class loci.poi.hssf.record.BoolErrRecord

Creates new BoolErrRecord

BoolErrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoolErrRecord

Constructs a BoolErr record and sets its fields appropriately.

BoolPtg - Class in loci.poi.hssf.record.formula

Boolean (boolean) Stores a (java) boolean value in a formula.

BoolPtg() - Constructor for class loci.poi.hssf.record.formula.BoolPtg

BoolPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.BoolPtg

BoolPtg(String) - Constructor for class loci.poi.hssf.record.formula.BoolPtg

BORDER - Static variable in class loci.plugins.shortcut.ShortcutPanel

Number of pixels for window border.

border - Variable in class loci.poi.hssf.record.DatRecord

BORDER_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dash-dot border

BORDER_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dash-dot-dot border

BORDER_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dash border

BORDER_DOTTED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

hair-line border

BORDER_DOUBLE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

double-line border

BORDER_HAIR - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dot border

BORDER_MEDIUM - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Medium border

BORDER_MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

medium dash-dot border

BORDER_MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

medium dash-dot-dot border

BORDER_MEDIUM_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Medium dashed border

BORDER_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

No border

BORDER_SLANTED_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

slanted dash-dot border

BORDER_THICK - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thick border

BORDER_THIN - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thin border

BORDER_TYPE_REGULAR - Static variable in class loci.poi.hssf.record.FrameRecord

BORDER_TYPE_SHADOW - Static variable in class loci.poi.hssf.record.FrameRecord

bordL - Variable in class loci.formats.in.SDTInfo

bordU - Variable in class loci.formats.in.SDTInfo

bottomHalfSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

bottomLeftQuarterSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

BottomMargin - Static variable in class loci.poi.hssf.model.Sheet

BottomMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

bottomMargin - Variable in class ome.jxr.parser.DatastreamParser

BottomMarginRecord - Class in loci.poi.hssf.record

Record for the bottom margin.

BottomMarginRecord() - Constructor for class loci.poi.hssf.record.BottomMarginRecord

BottomMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BottomMarginRecord

Constructs a BottomMargin record and sets its fields appropriately.

bottomRightQuarterSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

BoundSheetRecord - Class in loci.poi.hssf.record

Title: Bound Sheet Record (aka BundleSheet)

BoundSheetRecord() - Constructor for class loci.poi.hssf.record.BoundSheetRecord

BoundSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoundSheetRecord

Constructs a BoundSheetRecord and sets its fields appropriately

boundsheets - Variable in class loci.poi.hssf.model.Workbook

holds the "boundsheet" records (aka bundlesheet) so that they can have their reference to their "BOF" marker

boundValues - Variable in class loci.formats.services.MDBServiceImpl

boutT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The raw bit output used, for each thread

Box - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to create the box of JP2 file format.

Box(int, int, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box instance using the provided the box type and the box content in byte array format.

Box(int, int, long, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box instance using the provided the box type, the box extra length, and the box content in byte array format.

Box(ImageInputStream, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box instance from the provided ImageInputStream at the specified position.

Box(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box from an "unknown" Node.

BOX_SIZE - Static variable in class loci.formats.in.FakeReader

boxClasses - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

A Hashtable contains the class names for each type of the boxes.

boxes - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

The boxes of JP2 file used as meta data, i.

boxes - Variable in class loci.plugins.in.SeriesDialog

bpc - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Bits per component

BPC_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

base length of Bits Per Component box

bpcVaries - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Flag indicating whether number of bits per component varies

bpixels - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

bpos - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader

The position of the next bit to read in the bit buffer (0 means empty, 8 full)

bpos - Variable in class jj2000.j2k.entropy.decoder.ByteToBitInput

The position of the next bit to get from the byte buffer.

bpos - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

The position of the next bit to put in the bit buffer.

bpp - Variable in class loci.formats.in.BaseZeissReader

Number of bytes per pixel.

bpp - Variable in class loci.formats.in.BMPReader

Number of bits per pixel.

bpp - Variable in class loci.formats.in.MIASReader

bpp - Variable in class loci.formats.out.CellH5Writer

bpp - Variable in class loci.tests.testng.OpenBytesPerformanceTest

branch - Variable in class loci.formats.codec.HuffmanCodec.Decoder

brand - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

The element values.

breader - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

BreakMap - Variable in class loci.poi.hssf.record.PageBreakRecord

breaks - Variable in class loci.poi.hssf.record.PageBreakRecord

BRICKS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

BRICKS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Brick-like layout

BRIGHT_FIELD - Static variable in class loci.formats.in.LegacyND2Reader

BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader

BRIGHTNESS_VALUE - Static variable in class loci.formats.tiff.IFD

brokenNotes - Variable in class loci.formats.in.BioRadReader

BrowserOptionsWindow - Class in loci.plugins.util

Extension of JFrame that allows the user to adjust caching settings.

BrowserOptionsWindow(String, Cache, String[]) - Constructor for class loci.plugins.util.BrowserOptionsWindow

BrukerReader - Class in loci.formats.in

BrukerReader is the file format reader for Bruker MRI files.

BrukerReader() - Constructor for class loci.formats.in.BrukerReader

Constructs a new Bruker reader.

bsBuff - Variable in class loci.common.CBZip2InputStream

bsGetBit() - Method in class loci.common.CBZip2InputStream

bsGetInt() - Method in class loci.common.CBZip2InputStream

bsGetUByte() - Method in class loci.common.CBZip2InputStream

bsLive - Variable in class loci.common.CBZip2InputStream

bspos - Variable in class loci.poi.hssf.model.WorkbookRecordList

bsR(int) - Method in class loci.common.CBZip2InputStream

BSTORE_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

bsWriter - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

The bit-stream writer

BT_DIB - Static variable in class loci.poi.ddf.EscherBSERecord

BT_EMF - Static variable in class loci.poi.ddf.EscherBSERecord

BT_ERROR - Static variable in class loci.poi.ddf.EscherBSERecord

BT_JPEG - Static variable in class loci.poi.ddf.EscherBSERecord

BT_PICT - Static variable in class loci.poi.ddf.EscherBSERecord

BT_PNG - Static variable in class loci.poi.ddf.EscherBSERecord

BT_UNKNOWN - Static variable in class loci.poi.ddf.EscherBSERecord

BT_WMF - Static variable in class loci.poi.ddf.EscherBSERecord

BUBBLE_SERIES_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord

BUBBLE_SERIES_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord

BUBBLE_SERIES_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord

BUBBLE_SERIES_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord

bucketAbsoluteOffsets - Variable in class loci.poi.hssf.record.SSTRecord

Offsets from the beginning of the SST record (even across continuations)

bucketAbsoluteOffsets - Variable in class loci.poi.hssf.record.SSTSerializer

Offsets from the beginning of the SST record (even across continuations)

bucketRelativeOffsets - Variable in class loci.poi.hssf.record.SSTRecord

Offsets relative the start of the current SST or continue record

bucketRelativeOffsets - Variable in class loci.poi.hssf.record.SSTSerializer

Offsets relative the start of the current SST or continue record

buf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The line buffer.

buf - Variable in class jj2000.j2k.codestream.writer.BitOutputBuffer

The buffer where we store the data

buf - Variable in class jj2000.j2k.entropy.decoder.ByteInputBuffer

The byte array containing the data

buf - Variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The buffer where the data is stored

buf - Variable in class jj2000.j2k.image.input.ImgReaderPGM

The line buffer.

buf - Variable in class jj2000.j2k.util.ISRandomAccessIO

buf - Variable in class loci.formats.codec.BitWriter

Deprecated.

Buffer storing all bits written thus far.

BUF_DEF_LEN - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The default initial buffer size

BUF_INC - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The buffer increase size

buffer - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

buffer - Variable in class loci.common.ByteArrayHandle

Backing ByteBuffer.

buffer - Variable in class loci.common.NIOFileHandle

The buffer itself.

buffer(long, int) - Method in class loci.common.NIOFileHandle

Aligns the NIO buffer, maps it if it is not currently and sets all relevant positions and offsets.

buffer_ - Variable in class com.sun.media.imageioimpl.common.BitFile

BUFFER_SIZE - Static variable in class loci.formats.in.NativeND2Reader

BUFFER_SIZE - Static variable in class loci.formats.in.ZeissCZIReader

BufferedImageReader - Class in loci.formats.gui

A reader wrapper for reading image planes as BufferedImage objects.

BufferedImageReader() - Constructor for class loci.formats.gui.BufferedImageReader

Constructs a BufferedImageReader around a new image reader.

BufferedImageReader(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageReader

Constructs a BufferedImageReader with the given reader.

BufferedImageSource - Class in loci.formats.gui

Retrieves BufferedImages from a data source using Bio-Formats.

BufferedImageSource(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageSource

BufferedImageWriter - Class in loci.formats.gui

A writer wrapper for writing image planes from BufferedImage objects.

BufferedImageWriter() - Constructor for class loci.formats.gui.BufferedImageWriter

Constructs a BufferedImageWriter around a new image writer.

BufferedImageWriter(IFormatWriter) - Constructor for class loci.formats.gui.BufferedImageWriter

Constructs a BufferedImageWriter with the given writer.

BufferedRandomAccessFile - Class in jj2000.j2k.io

This class defines a Buffered Random Access File.

BufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

BufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

BufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

BufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

bufferSize - Variable in class loci.common.NIOFileHandle

The buffer size.

bufferStartPosition - Variable in class loci.common.NIOFileHandle

The absolute position of the start of the buffer.

bufSize(int, int, int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the maximum size of the buffer (in bytes) required to hold a JPEG image with the given width and height, and level of chrominance subsampling.

bufSizeYUV(int, int, int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the size of the buffer (in bytes) required to hold a YUV planar image with the given width, height, and level of chrominance subsampling.

bugaddr - Static variable in class jj2000.j2k.JJ2KInfo

The bug reporting e-mail address

BUILD - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default 0x10d3

BUILD_YEAR - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default 0x07CC (1996)

buildAndWriteLayers() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

This method builds all the bit stream layers and then writes them to the output bit stream.

buildCondition(Object, int, Object) - Method in class mdbtools.dbengine.Tests

buildDB() - Method in class mdbtools.dbengine.Tests

buildEquation(Object, int, Object) - Method in class mdbtools.dbengine.Tests

BUILDER - Static variable in class loci.formats.meta.OriginalMetadataAnnotation

builder - Variable in class ome.xml.meta.AbstractOMEXMLMetadata

buildExtensions() - Method in class loci.plugins.macro.MacroFunctions

Builds the list of extensions, using reflection, from public methods of this class.

buildFileChooser(IFormatHandler) - Static method in class loci.formats.gui.GUITools

Constructs a file chooser for the given file format handler.

buildFileChooser(IFormatHandler, boolean) - Static method in class loci.formats.gui.GUITools

Constructs a file chooser for the given file format handler.

buildFileChooser(FileFilter[]) - Static method in class loci.formats.gui.GUITools

Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter.

buildFileChooser(FileFilter[], boolean) - Static method in class loci.formats.gui.GUITools

Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter, if one is not already specified.

buildFileFilters(IFormatHandler) - Static method in class loci.formats.gui.GUITools

Constructs a list of file filters for the given file format handler.

buildFiles(String, int, List<String>) - Method in class loci.formats.FilePattern

Recursive method for building filenames for the file listing.

buildFontCharactersProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails

buildFontHeightProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails

buildFontWidthsProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails

buildFunction(Function, Object) - Method in class mdbtools.dbengine.Tests

buildFunction(Aggregate, Object) - Method in class mdbtools.dbengine.Tests

buildJoin(Object, int, Table, Equation) - Method in class mdbtools.dbengine.Tests

buildPalette() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

buildSelect(Object[], Object[], Object, FQColumn[], Object[][]) - Method in class mdbtools.dbengine.Tests

buildTestCases() - Method in class mdbtools.dbengine.Tests

buildTIFFList(int) - Method in class loci.formats.in.MicromanagerReader

buildTIFFList(int, String) - Method in class loci.formats.in.MicromanagerReader

Populate the list of TIFF files using the given file name as a pattern.

buildTime - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The wall time for the building of layers.

buildTypes() - Static method in class loci.formats.in.DicomReader

Assemble the data dictionary.

BUILTIN_AUTO_ACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_AUTO_CLOSE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_AUTO_DEACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_AUTO_OPEN - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_CONSOLIDATE_AREA - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_CRITERIA - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_DATA_FORM - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_DATABASE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_PRINT_AREA - Static variable in class loci.poi.hssf.record.NameRecord

BUILTIN_PRINT_TITLE - Static variable in class loci.poi.hssf.record.NameRecord

BUILTIN_RECORDER - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_SHEET_TITLE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

builtinFormats - Static variable in class loci.poi.hssf.usermodel.HSSFDataFormat

BurleighReader - Class in loci.formats.in

BurleighReader is the file format reader for Burleigh .img files.

BurleighReader() - Constructor for class loci.formats.in.BurleighReader

Constructs a new Burleigh reader.

bypass - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Uses the lazy coding mode with the entropy coder.

BYTE - Static variable in class loci.formats.in.GatanReader

BYTE_COUNT_OFFSET - Static variable in class loci.formats.out.QTWriter

Seek to this offset to update the total number of pixel bytes.

BYTE_ORDER_ASSERTION - Static variable in class loci.poi.hpsf.PropertySet

The "byteOrder" field must equal this value.

BYTE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

ByteArrayHandle - Class in loci.common

A wrapper for a byte array that implements the IRandomAccess interface.

ByteArrayHandle(byte[]) - Constructor for class loci.common.ByteArrayHandle

Creates a random access byte stream to read from, and write to, the bytes specified by the byte[] argument.

ByteArrayHandle(ByteBuffer) - Constructor for class loci.common.ByteArrayHandle

ByteArrayHandle(int) - Constructor for class loci.common.ByteArrayHandle

Creates a random access byte stream to read from, and write to.

ByteArrayHandle() - Constructor for class loci.common.ByteArrayHandle

Creates a random access byte stream to write to a byte array.

byteArraySet(byte[], byte) - Static method in class jj2000.j2k.util.ArrayUtil

Reinitializes a byte array to the given value in an optimized way.

ByteArraySource - Class in loci.formats.cache

Retrieves byte arrays from a data source (e.g., a file) using Bio-Formats.

ByteArraySource(IFormatReader) - Constructor for class loci.formats.cache.ByteArraySource

Constructs a byte array source from the given Bio-Formats reader.

ByteArraySource(String) - Constructor for class loci.formats.cache.ByteArraySource

Constructs a byte array source that draws from the given file.

bytebuf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

byteBuffer - Variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream

A ByteBuffer used for writing to the channel.

byteBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Buffer of bytes containing the part of the file that is currently being accessed

byteBuffer - Variable in class loci.formats.codec.BitBuffer

Deprecated.

byteBufferChanged - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Boolean keeping track of whether the byte buffer has been changed since it was read.

byteBufferProvider - Variable in class loci.common.NIOFileHandle

Provider class for NIO byte buffers, allocated or memory mapped.

byteCount - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The number of bytes of data from the source ImageInputStream to be decompressed.

ByteField - Class in loci.poi.util

representation of a byte (8-bit) field at a fixed location within a byte array

ByteField(int) - Constructor for class loci.poi.util.ByteField

construct the ByteField with its offset into its containing byte array and a default value of 0

ByteField(int, byte) - Constructor for class loci.poi.util.ByteField

construct the ByteField with its offset into its containing byte array and initialize its value

ByteField(int, byte[]) - Constructor for class loci.poi.util.ByteField

Construct the ByteField with its offset into its containing byte array and initialize its value from its byte array

ByteField(int, byte, byte[]) - Constructor for class loci.poi.util.ByteField

construct the ByteField with its offset into its containing byte array, initialize its value, and write its value to its byte array

byteIn() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

This function gets one byte of compressed bits from the in-stream.

ByteInputBuffer - Class in jj2000.j2k.entropy.decoder

This class provides a byte input facility from byte buffers.

ByteInputBuffer(byte[]) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer

Creates a new byte array input stream that reads data from the specified byte array.

ByteInputBuffer(byte[], int, int) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer

Creates a new byte array input stream that reads data from the specified byte array.

byteOffset - Variable in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

byteOrder - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's byte order.

byteOrder - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

byteOrder - Variable in class org.libjpegturbo.turbojpeg.TJDecompressor

byteOrdering - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

byteOut() - Method in class jj2000.j2k.entropy.encoder.MQCoder

This function puts one byte of compressed bits in the out out stream.

ByteOutputBuffer - Class in jj2000.j2k.entropy.encoder

This class provides a buffering output stream similar to ByteArrayOutputStream, with some additional methods.

ByteOutputBuffer() - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Creates a new byte array output stream.

ByteOutputBuffer(int) - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Creates a new byte array output stream, with a buffer capacity of the specified size, in bytes.

bytePointer - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

bytes - Variable in class loci.formats.in.OBFReader.Frame

bytes - Variable in class loci.formats.tiff.TiffSaver

Output bytes.

bytes - Variable in class loci.poi.hpsf.ClassID

The bytes making out the class ID in correct order, i.e.

BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants

The number of bytes in each IFD entry.

BYTES_PER_PIXEL - Static variable in class ome.specification.XMLMockObjects

The number of bytes per pixels.

bytesFromReader(IFormatReader) - Method in class loci.formats.Memoizer.RandomAccessDeser

bytesPerAxis - Variable in class loci.formats.in.LeicaHandler

bytesPerElement - Variable in enum loci.formats.tiff.IFDType

Number of bytes per element of this type.

bytesPerLine - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

bytesPerLine - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

bytesPerLine - Variable in class loci.formats.in.PCXReader

Number of bytes per scan line - may be different than image width.

bytesPerPixel - Variable in class loci.formats.in.AmiraReader.ASCII

bytesPerPixel - Variable in class loci.formats.in.GatanReader

bytesPerPixel - Variable in class loci.formats.in.OpenlabRawReader

Number of bytes per pixel.

bytesPerPixel - Variable in class loci.formats.out.AVIWriter

bytesPerPixel - Variable in class loci.tests.testng.Jpeg2000GrindTest

bytesPerPlane - Variable in class loci.formats.in.AVIReader

bytesToDouble(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a double.

bytesToDouble(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

bytesToDouble(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a double.

bytesToDouble(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a double.

bytesToDouble(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

bytesToDouble(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a double.

bytesToFloat(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a float.

bytesToFloat(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

bytesToFloat(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to a float.

bytesToFloat(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond a given offset to a float.

bytesToFloat(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

bytesToFloat(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to a float.

bytesToHex(byte[]) - Static method in class loci.common.DataTools

Translates the given byte array into a String of hexadecimal digits.

bytesToInt(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to an int.

bytesToInt(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

bytesToInt(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to an int.

bytesToInt(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to an int.

bytesToInt(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

bytesToInt(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to an int.

bytesToLong(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a long.

bytesToLong(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

bytesToLong(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a long.

bytesToLong(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a long.

bytesToLong(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

bytesToLong(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a long.

bytesToShort(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a short.

bytesToShort(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array beyond the given offset to a short.

bytesToShort(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array to a short.

bytesToShort(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array byond the given offset to a short.

bytesToShort(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array byond the given offset to a short.

bytesToShort(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array to a short.

byteTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

ByteToBitInput - Class in jj2000.j2k.entropy.decoder

This class provides an adapter to perform bit based input on byte based output obejcts that inherit from a 'ByteInputBuffer' class.

ByteToBitInput(ByteInputBuffer) - Constructor for class jj2000.j2k.entropy.decoder.ByteToBitInput

Instantiates a new 'ByteToBitInput' object that uses 'in' as the underlying byte based input.

byteValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a byte.

ByteVector - Class in loci.formats.codec

A growable array of bytes.

ByteVector() - Constructor for class loci.formats.codec.ByteVector

ByteVector(int) - Constructor for class loci.formats.codec.ByteVector

ByteVector(byte[]) - Constructor for class loci.formats.codec.ByteVector

BZip2Handle - Class in loci.common

StreamHandle implementation for reading from BZip2-compressed files or byte arrays.

BZip2Handle(String) - Constructor for class loci.common.BZip2Handle

Construct a new BZip2Handle corresponding to the given file.

C

c - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The current bit code

c - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The current bit code

c - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The component on which to compress

C - Static variable in class loci.formats.AxisGuesser

Prefix endings indicating channel dimension.

c - Variable in class loci.formats.in.LeicaSCNReader.Dimension

c - Variable in class loci.formats.in.MicromanagerReader.Index

c - Variable in class loci.formats.in.OperettaReader.Plane

c - Variable in class loci.formats.tools.AmiraParameters

c - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

C01_MAGIC_BYTES - Static variable in class loci.formats.in.CellomicsReader

C_AXIS - Static variable in class loci.formats.AxisGuesser

Axis type for channels.

C_KEY - Static variable in class loci.formats.in.LiFlimReader

C_STRING - Static variable in class loci.formats.in.SDTInfo

cache - Static variable in class loci.common.CaseInsensitiveLocation

cache - Variable in class loci.common.CaseInsensitiveLocation.Cache

Mapping of directory names to directory content, the content being a mapping of case insensitive name to case sensitive (real) name on disc.

Cache - Class in loci.formats.cache

Cache provides a means of managing subsets of large collections of image planes in memory.

Cache(ICacheStrategy, ICacheSource, boolean) - Constructor for class loci.formats.cache.Cache

Constructs an object cache with the given cache strategy and source.

cache - Variable in class loci.formats.cache.Cache

Master array containing cached objects.

cache - Variable in class loci.formats.cache.CacheUpdater

cache - Variable in class loci.formats.gui.CacheComponent

The cache that this component controls.

cache - Variable in class loci.formats.gui.CacheIndicator

cache - Variable in class loci.plugins.util.BFVirtualStack

CacheComponent - Class in loci.formats.gui

GUI component for managing a cache.

CacheComponent(Cache, String[]) - Constructor for class loci.formats.gui.CacheComponent

Creates a cache GUI component.

CacheComponent(Cache, String[], String) - Constructor for class loci.formats.gui.CacheComponent

Creates a cache GUI component with the ability to change between the various source types (mainly for debugging purposes).

CacheConsole - Class in loci.formats.tools

CacheConsole provides an interactive interpreter for testing the Bio-Formats caching implementation.

CacheConsole() - Constructor for class loci.formats.tools.CacheConsole

cachedDecoders - Variable in class loci.formats.codec.HuffmanCodec

cacheDirectoryListings(boolean) - Static method in class loci.common.Location

Turn cacheing of directory listings on or off.

cachedTileBuffer - Variable in class loci.formats.in.MIASReader

Cached tile buffer to avoid re-allocations when reading tiles.

cachedTileBuffer - Variable in class loci.formats.tiff.TiffParser

Cached tile buffer to avoid re-allocations when reading tiles.

CacheEvent - Class in loci.formats.cache

A event indicating a cache update.

CacheEvent(Object, int) - Constructor for class loci.formats.cache.CacheEvent

Constructs a cache event.

CacheEvent(Object, int, int) - Constructor for class loci.formats.cache.CacheEvent

Constructs a cache event.

CacheException - Exception in loci.formats.cache

CacheException is the exception thrown when something goes wrong performing a cache operation.

CacheException() - Constructor for exception loci.formats.cache.CacheException

CacheException(String) - Constructor for exception loci.formats.cache.CacheException

CacheException(String, Throwable) - Constructor for exception loci.formats.cache.CacheException

CacheException(Throwable) - Constructor for exception loci.formats.cache.CacheException

CacheIndicator - Class in loci.formats.gui

Indicator GUI component showing which planes are currently in the cache for a given dimensional axis at a particular dimensional position.

CacheIndicator(Cache, int) - Constructor for class loci.formats.gui.CacheIndicator

Creates a new cache indicator for the given cache.

CacheIndicator(Cache, int, Component, int, int) - Constructor for class loci.formats.gui.CacheIndicator

Creates a new cache indicator.

CacheListener - Interface in loci.formats.cache

A listener for cache updates.

cacheListings - Static variable in class loci.common.Location

cacheNanos - Static variable in class loci.common.Location

CacheReporter - Interface in loci.formats.cache

Interface for components capable of reporting cache updates.

CacheSource - Class in loci.formats.cache

Superclass of cache sources that retrieve image planes from a data source (e.g., a file) using Bio-Formats.

CacheSource(IFormatReader) - Constructor for class loci.formats.cache.CacheSource

Constructs a cache source from the given Bio-Formats reader.

CacheSource(String) - Constructor for class loci.formats.cache.CacheSource

Constructs a cache source that draws from the given file.

CacheStrategy - Class in loci.formats.cache

Superclass of cache strategies.

CacheStrategy(int[]) - Constructor for class loci.formats.cache.CacheStrategy

Constructs a cache strategy.

cacheUpdated(CacheEvent) - Method in interface loci.formats.cache.CacheListener

Called when cache is updated.

cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheComponent

Updates GUI to match latest cache state.

cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheIndicator

CacheUpdater - Class in loci.formats.cache

Thread responsible for updating the cache (loading and dropping planes) in the background.

CacheUpdater(Cache) - Constructor for class loci.formats.cache.CacheUpdater

calcBasisWaveForms(float[][]) - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Calculates the basis waveform of the first leaf for which the L2-norm has not been calculated yet.

CalcCountRecord - Class in loci.poi.hssf.record

Title: Calc Count Record Description: Specifies the maximum times the gui should perform a formula recalculation.

CalcCountRecord() - Constructor for class loci.poi.hssf.record.CalcCountRecord

CalcCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcCountRecord

Constructs a CalcCountRecord and sets its fields appropriately

calcExtSSTRecordSize() - Method in class loci.poi.hssf.record.SSTRecord

Calculates the size in bytes of the EXTSST record as it would be if the record was serialized.

calcL2Norms() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Calculates the L2-norm of the sythesis waveforms of every leaf in the tree.

calcMaxMagBits(J2KImageWriteParamJava) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Calculates the maximum amount of magnitude bits for each tile-component, and stores it in the 'maxMagBits' array.

calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.

calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.

CalcModeRecord - Class in loci.poi.hssf.record

Title: Calc Mode Record

CalcModeRecord() - Constructor for class loci.poi.hssf.record.CalcModeRecord

CalcModeRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcModeRecord

Constructs a CalcModeRecord and sets its fields appropriately

calcOnLoad - Variable in class loci.poi.hssf.record.FormulaRecord

calcPhotons - Variable in class loci.formats.in.SDTInfo

No of photons.

calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Calculates the parameters of the SubbandAn objects that depend on the Quantizer.

calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Calculates the parameters of the SubbandAn objects that depend on the Quantizer.

calcSize() - Method in class loci.poi.hpsf.MutableSection

Calculates the section's size.

calcSize(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

Calculate the storage size of a set of SmallDocumentBlocks

calcSkipMSBP(CBlkWTData, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Calculates the number of magnitude bit-planes that are to be skipped, because they are non-significant.

calculateDimensions() - Method in class loci.formats.in.ZeissCZIReader

calculateIFDOffset() - Method in class ome.jxr.parser.FileParser

calculateStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock

Calculate how many BATBlocks are needed to hold a specified number of BAT entries.

calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock

Calculate how many XBATBlocks are needed to hold a specified number of BAT entries.

calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.HeaderBlockWriter

For a given number of BAT blocks, calculate how many XBAT blocks will be needed

calibratedMagnification - Variable in class ome.xml.model.Objective

CALIBRATION - Static variable in class loci.formats.in.OpenlabReader

calibrationTable - Variable in class loci.plugins.util.BFVirtualStack

calibrationUnit - Variable in class loci.formats.in.TiffReader

Calibrator - Class in loci.plugins.in

Logic for calibrating images.

Calibrator(ImportProcess) - Constructor for class loci.plugins.in.Calibrator

CALLOUT__CALLOUTACCENTBAR - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTANGLE - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTDROPSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTDROPTYPE - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTLENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTMINUSX - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTMINUSY - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTTEXTBORDER - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTTYPE - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__DROPAUTO - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__ISCALLOUT - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__LENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__XYCALLOUTGAP - Static variable in class loci.poi.ddf.EscherProperties

CAMERA_GAIN - Static variable in class loci.formats.in.CellSensReader

CAMERA_GAMMA - Static variable in class loci.formats.in.CellSensReader

CAMERA_OFFSET - Static variable in class loci.formats.in.CellSensReader

CAMERA_SERIAL_SETTING - Static variable in class loci.formats.in.FluoviewReader

cameraIDs - Variable in class loci.formats.in.FlexReader

cameraMode - Variable in class loci.formats.in.MicromanagerReader.Position

cameraModel - Variable in class loci.formats.in.ND2Handler

cameraName - Variable in class loci.formats.in.SimplePCITiffReader

cameraName - Variable in class loci.formats.in.SISReader

cameraRef - Variable in class loci.formats.in.MicromanagerReader.Position

cameraRefs - Variable in class loci.formats.in.FlexReader

cameraType - Variable in class loci.formats.in.SimplePCITiffReader

CAN_GROUP - Static variable in class loci.formats.FormatTools

CAN_GROUP - Static variable in interface loci.formats.IFormatReader

canAdjustDimensions - Variable in class loci.formats.in.ND2Handler

cancel - Variable in class loci.plugins.in.ImportProcess

Whether the process has been canceled.

cancel() - Method in class loci.plugins.in.ImportProcess

Cancels the import process.

canceled - Variable in class loci.plugins.LociImporter

Flag indicating whether last operation was canceled.

canceled - Variable in class loci.plugins.Slicer

Flag indicating whether last operation was canceled.

canceled - Variable in class loci.plugins.Updater

Flag indicating whether last operation was canceled.

canChangePattern() - Method in class loci.formats.FileStitcher

canCloseReader - Variable in class loci.formats.gui.ImageViewer

canCreatePalette(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Returns true if PaletteBuilder is able to create palette for given image type.

canCreatePalette(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Returns true if PaletteBuilder is able to create palette for given rendered image.

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

canDoQT() - Method in class loci.formats.gui.LegacyQTTools

Whether QuickTime is available to this JVM.

canDoStacks() - Method in class loci.formats.FormatWriter

canDoStacks() - Method in interface loci.formats.IFormatWriter

Reports whether the writer can save multiple images to a single file.

canDoStacks() - Method in class loci.formats.ImageWriter

canDoStacks() - Method in class loci.formats.out.APNGWriter

canDoStacks() - Method in class loci.formats.out.AVIWriter

canDoStacks() - Method in class loci.formats.out.CellH5Writer

canDoStacks() - Method in class loci.formats.out.ICSWriter

canDoStacks() - Method in class loci.formats.out.JavaWriter

canDoStacks() - Method in class loci.formats.out.JPEG2000Writer

Overridden to indicate that stacks are not supported.

canDoStacks() - Method in class loci.formats.out.LegacyQTWriter

canDoStacks() - Method in class loci.formats.out.OMEXMLWriter

canDoStacks() - Method in class loci.formats.out.QTWriter

canDoStacks() - Method in class loci.formats.out.TiffWriter

canDoStacks() - Method in class loci.formats.out.V3DrawWriter

canDoStacks() - Method in class loci.formats.out.WlzWriter

canDoStacks() - Method in class loci.formats.WriterWrapper

canDoUpgradeCheck() - Method in class loci.formats.UpgradeChecker

Return whether or not we are ever allowed to perform an upgrade check.

canEncodeImage(ImageWriter, ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Checks that the provided ImageWriter can encode the provided ImageTypeSpecifier or not.

canEncodeImage(ImageWriter, ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Checks that the provided ImageWriter can encode the provided ColorModel and SampleModel.

canEncodeImage(int, ColorModel, SampleModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

canEncodeImage(int, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

canFitInMemory(long) - Static method in class loci.tests.testng.TestTools

Returns true if a byte buffer of the given size will fit in memory.

canImport(JComponent, DataFlavor[]) - Method in class loci.plugins.shortcut.ShortcutTransferHandler

canInsertEmpty(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canInsertImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canLookForND - Variable in class loci.formats.in.MetamorphReader

canMerge() - Method in class loci.formats.ChannelMerger

Determines whether the channels in the file can be merged.

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat

CANNOT_GROUP - Static variable in class loci.formats.FormatTools

CANNOT_GROUP - Static variable in interface loci.formats.IFormatReader

CANON_TAG - Static variable in class loci.formats.in.DNGReader

CanonRawReader - Class in loci.formats.in

CanonRawReader is the file format reader for Canon RAW files.

CanonRawReader() - Constructor for class loci.formats.in.CanonRawReader

Constructs a new Canon RAW reader.

canParse - Variable in class loci.formats.in.LeicaHandler

canRead() - Method in class loci.common.Location

If the underlying location is a URL, this method will return true if the URL exists.

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

canReplacePixels(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canUseBankDataDirectly(WritableRaster, int, Class<? extends DataBuffer>) - Static method in class loci.formats.gui.AWTImageTools

Whether we can return the data buffer's bank data without performing any copy or conversion operations.

canUsePrevious - Variable in class loci.formats.in.NativeQTReader

Flag indicating whether we can safely use prevPixels.

CANVAS_COLOR_1 - Static variable in class loci.formats.in.CellSensReader

CANVAS_COLOR_2 - Static variable in class loci.formats.in.CellSensReader

canWrite() - Method in class loci.common.Location

If the underlying location is a URL, this method will always return false.

canWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

CAPTURE_EDITOR_DATA - Static variable in class loci.formats.in.NikonReader

CAPTURE_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CaseInsensitiveLocation - Class in loci.common

Case insensitive variant of Location.

CaseInsensitiveLocation(String) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(Location) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(File) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(String, String) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(CaseInsensitiveLocation, String) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation.Cache - Class in loci.common

Caching for CaseInsensitiveLocation.

CaseInsensitiveLocation.Cache() - Constructor for class loci.common.CaseInsensitiveLocation.Cache

The constructor.

cast(Class<?>) - Method in class loci.formats.ClassList

Cast the given class to something that extends the base class.

cat(byte[][]) - Static method in class loci.poi.hpsf.Util

Concatenates the contents of several byte arrays into a single one.

cat - Variable in class loci.poi.util.SystemOutLogger

Catalog - Class in mdbtools.libmdb

Catalog() - Constructor for class mdbtools.libmdb.Catalog

catalog - Variable in class mdbtools.libmdb.MdbHandle

category - Variable in class loci.formats.in.BaseZeissReader.Tag

category - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling

category - Variable in class loci.formats.in.ZeissTIFFHandler.Tag

CATEGORY_DATA_TYPE_ALL_TEXT_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

CATEGORY_DATA_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_SHOW_LABELS_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

CATEGORY_DATA_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_VALUE_AND_PERCENTAGE_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

CategorySeriesAxisRecord - Class in loci.poi.hssf.record

This record refers to a category or series axis and is used to specify label/tickmark frequency.

CategorySeriesAxisRecord() - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord

CategorySeriesAxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord

Constructs a CategorySeriesAxis record and sets its fields appropriately.

causalCXInfo - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Uses vertically stripe causal context formation.

cb0x - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The horizontal code-block partition origin

cb0x - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The horizontal coordinate of the code-block partition origin on the reference grid

cb0y - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The vertical code-block partition origin

cb0y - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The vertical coordinate of the code-block partition on the reference grid

CBAR - Static variable in class ome.units.UNITS

cBegin - Variable in class loci.plugins.in.ImporterOptions

cbI - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Array containing info.

cbLength - Variable in class jj2000.j2k.codestream.reader.PktInfo

The length of the code-block in this packet (in bytes)

cblk - Variable in class jj2000.j2k.codestream.PrecInfo

Code-blocks belonging to this precinct in each subbands of the resolution level

CBlkCoordInfo - Class in jj2000.j2k.codestream

This class is used to store the coordinates of code-blocks.

CBlkCoordInfo() - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo

Constructor.

CBlkCoordInfo(int, int) - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo

Constructor.

CBlkInfo - Class in jj2000.j2k.codestream.reader

This class contains location of code-blocks' piece of codewords (there is one piece per layer) and some other information.

CBlkInfo(int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.reader.CBlkInfo

Constructs a new instance with specified number of layers and code-block coordinates.

CBlkQuantDataSrcDec - Interface in jj2000.j2k.quantization.dequantizer

This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis, fro the decoder side.

CBlkQuantDataSrcEnc - Interface in jj2000.j2k.quantization.quantizer

This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis.

CBlkRateDistStats - Class in jj2000.j2k.entropy.encoder

This class stores coded (compressed) code-blocks with their associated rate-distortion statistics.

CBlkRateDistStats() - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Creates a new CBlkRateDistStats object without allocating any space for 'truncRates', 'truncSlopes', 'truncDists' and 'truncIdxs' or 'data'.

CBlkRateDistStats(int, int, int, byte[], int[], double[], boolean[], int, boolean) - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Creates a new CBlkRateDistStats object and initializes the valid truncation points, their rates and their slopes, from the 'rates' and 'dist' arrays.

cblks - Variable in class jj2000.j2k.codestream.reader.PktDecoder

List of code-blocks found in last read packet head (one list per subband)

cblks - Variable in class jj2000.j2k.decoder.DecoderSpecs

Code-blocks sizes specification

cblks - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

5D Array containing all the coded code-blocks: 1st index: tile index 2nd index: component index 3rd index: resolution level index 4th index: subband index 5th index: code-block index

cblks - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The code-block size specifications

cblks - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The code-block size specifications

CBlkSizeSpec - Class in jj2000.j2k.entropy

This class extends ModuleSpec class for code-blocks sizes holding purposes.

CBlkSizeSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec

Creates a new CBlkSizeSpec object for the specified number of tiles and components.

CBlkSizeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec

Creates a new CBlkSizeSpec object for the specified number of tiles and components and the parameters instance.

cblkToDecode - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

The total number of code-blocks to decode

CBlkWTData - Class in jj2000.j2k.wavelet.analysis

This is a generic abstract class to store a code-block of wavelet data, be it quantized or not.

CBlkWTData() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTData

CBlkWTDataFloat - Class in jj2000.j2k.wavelet.analysis

This is an implementation of the 'CBlkWTData' abstract class for 32 bit floating point data (float).

CBlkWTDataFloat() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

CBlkWTDataInt - Class in jj2000.j2k.wavelet.analysis

This is an implementation of the 'CBlkWTData' abstract class for signed 32 bit integer data.

CBlkWTDataInt() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

CBlkWTDataSrc - Interface in jj2000.j2k.wavelet.analysis

This abstract class defines methods to transfer wavelet data in a code-block by code-block basis.

CBlkWTDataSrcDec - Interface in jj2000.j2k.wavelet.synthesis

This abstract class defines methods to transfer wavelet data in a code-block by code-block basis, for the decoder side.

cbOff - Variable in class jj2000.j2k.codestream.reader.PktInfo

The code-block offset in the codestream (for this packet)

CBZip2InputStream - Class in loci.common

An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.

CBZip2InputStream(InputStream) - Constructor for class loci.common.CBZip2InputStream

Constructs a new CBZip2InputStream which decompresses bytes read from the specified stream.

CBZip2InputStream.Data - Class in loci.common

CBZip2InputStream.Data(int) - Constructor for class loci.common.CBZip2InputStream.Data

ccb - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The object where to store the compressed code-block

CCD_SENSITIVITY - Static variable in class loci.formats.in.CellSensReader

cChoice - Variable in class loci.formats.gui.DataConverter

cChoice - Variable in class loci.plugins.in.SwapDialog

ccoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

ccom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM

cdata - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

cdata - Variable in class loci.formats.in.ZeissTIFFHandler

cdstreamStart - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

ce - Variable in class jj2000.j2k.entropy.Progression

Component index for the end of a progression.

CELL_LENGTH - Static variable in class loci.formats.tiff.IFD

CELL_TYPE_BLANK - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Blank Cell type (3)

CELL_TYPE_BOOLEAN - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Boolean Cell type (4)

CELL_TYPE_ERROR - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Error Cell type (5)

CELL_TYPE_FORMULA - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Formula Cell type (2)

CELL_TYPE_NUMERIC - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Numeric Cell type (0)

CELL_TYPE_STRING - Static variable in class loci.poi.hssf.usermodel.HSSFCell

String Cell type (1)

CELL_WIDTH - Static variable in class loci.formats.tiff.IFD

CellH5PathsToImageData - Variable in class loci.formats.in.CellH5Reader

CellH5PositionList - Variable in class loci.formats.in.CellH5Reader

CellH5Reader - Class in loci.formats.in

Reader for CellH5 (HDF) files.

CellH5Reader() - Constructor for class loci.formats.in.CellH5Reader

Constructs a new CellH5 HDF reader.

CellH5Reader.CellH5Constants - Class in loci.formats.in

CellH5Reader.CellH5Constants() - Constructor for class loci.formats.in.CellH5Reader.CellH5Constants

CellH5Reader.CellH5Coordinate - Class in loci.formats.in

CellH5Reader.CellH5Coordinate(String, String, String) - Constructor for class loci.formats.in.CellH5Reader.CellH5Coordinate

CellH5Writer - Class in loci.formats.out

CellH5Writer is the file format writer for CellH5 format.

CellH5Writer() - Constructor for class loci.formats.out.CellH5Writer

CellH5Writer(String, String[]) - Constructor for class loci.formats.out.CellH5Writer

cellIterator() - Method in class loci.poi.hssf.usermodel.HSSFRow

cellObjectNames - Variable in class loci.formats.in.CellH5Reader

cellomicsPattern - Variable in class loci.formats.in.CellomicsReader

CellomicsReader - Class in loci.formats.in

Reader for Cellomics C01 files.

CellomicsReader() - Constructor for class loci.formats.in.CellomicsReader

Constructs a new Cellomics reader.

CellReference - Class in loci.poi.hssf.util

CellReference(String) - Constructor for class loci.poi.hssf.util.CellReference

CellReference(int, int) - Constructor for class loci.poi.hssf.util.CellReference

CellReference(int, int, boolean, boolean) - Constructor for class loci.poi.hssf.util.CellReference

cells - Variable in class loci.poi.hssf.model.Sheet

cells - Variable in class loci.poi.hssf.usermodel.HSSFRow

cells - Variable in class loci.poi.hssf.util.AreaReference

CellSensReader - Class in loci.formats.in

CellSensReader is the file format reader for cellSens .vsi files.

CellSensReader() - Constructor for class loci.formats.in.CellSensReader

Constructs a new cellSens reader.

CellSensReader.Pyramid - Class in loci.formats.in

CellSensReader.Pyramid() - Constructor for class loci.formats.in.CellSensReader.Pyramid

CellSensReader.TileCoordinate - Class in loci.formats.in

CellSensReader.TileCoordinate(int) - Constructor for class loci.formats.in.CellSensReader.TileCoordinate

cellType - Variable in class loci.poi.hssf.usermodel.HSSFCell

CellValueRecordInterface - Interface in loci.poi.hssf.record

The cell value record interface is implemented by all classes of type Record that contain cell values.

CellVoyagerReader - Class in loci.formats.in

A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope ( http://www.yokogawa.com/scanner/products/cv1000e.htm).

CellVoyagerReader() - Constructor for class loci.formats.in.CellVoyagerReader

CellVoyagerReader.AreaInfo - Class in loci.formats.in

CellVoyagerReader.AreaInfo() - Constructor for class loci.formats.in.CellVoyagerReader.AreaInfo

CellVoyagerReader.ChannelInfo - Class in loci.formats.in

CellVoyagerReader.ChannelInfo() - Constructor for class loci.formats.in.CellVoyagerReader.ChannelInfo

CellVoyagerReader.FieldInfo - Class in loci.formats.in

CellVoyagerReader.FieldInfo() - Constructor for class loci.formats.in.CellVoyagerReader.FieldInfo

CellVoyagerReader.WellInfo - Class in loci.formats.in

CellVoyagerReader.WellInfo() - Constructor for class loci.formats.in.CellVoyagerReader.WellInfo

CellWorxReader - Class in loci.formats.in

CellWorxReader is the file format reader for CellWorx .pnl files.

CellWorxReader() - Constructor for class loci.formats.in.CellWorxReader

Constructs a new CellWorx reader.

cEnd - Variable in class loci.plugins.in.ImporterOptions

CENTER - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

center - Variable in class loci.poi.hssf.usermodel.HSSFFooter

center - Variable in class loci.poi.hssf.usermodel.HSSFHeader

CENTER_SELECTION - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

CENTERED_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy

centerPixelValue - Variable in class loci.formats.in.DicomReader

centerX - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

centerY - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

CENTI(Unit<T>) - Static method in class ome.units.UNITS

cepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

certain - Variable in class loci.formats.AxisGuesser

Whether the guesser is confident that all axis types are correct.

certain - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane

Certainty flag, for dealing with unspecified NumPlanes.

cf - Variable in class org.libjpegturbo.turbojpeg.TJTransform

Custom filter instance

CF_BITMAP - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Bitmap

CF_DIB - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Device Independent Bitmap

CF_ENHMETAFILE - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Enhanced Windows metafile format

CF_METAFILEPICT - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Windows metafile format.

CFA_PATTERN - Static variable in class loci.formats.tiff.IFD

cfaPattern - Variable in class loci.formats.in.DNGReader

cfaPattern - Variable in class loci.formats.in.NikonReader

cfdHF - Variable in class loci.formats.in.SDTInfo

cfdLH - Variable in class loci.formats.in.SDTInfo

cfdLL - Variable in class loci.formats.in.SDTInfo

cfdZC - Variable in class loci.formats.in.SDTInfo

CFG_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

CFG_SUFFIX - Static variable in class loci.formats.in.PrairieReader

cfgFile - Variable in class loci.formats.in.PrairieReader

The associated XML files.

cftab - Variable in class loci.common.CBZip2InputStream.Data

CFTAG_FMTID - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - Format ID

CFTAG_MACINTOSH - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - Macintosh clipboard format

CFTAG_NODATA - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - No Data

CFTAG_WINDOWS - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - Windows clipboard format

CHAINED_LAYERS - Static variable in class loci.formats.in.CellSensReader

chan - Variable in class loci.formats.in.SDTInfo

Routing channel number.

CHANDESC - Static variable in class loci.formats.in.LeicaReader

changedUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets

changeName(String, String) - Method in class loci.poi.poifs.filesystem.DirectoryNode

Change a contained Entry's name

changeName(Property, String) - Method in class loci.poi.poifs.property.DirectoryProperty

Change a Property's name

changeOutputFile(String) - Method in class loci.formats.FormatWriter

changeOutputFile(String) - Method in interface loci.formats.IFormatWriter

Switch the output file for the current dataset.

changeOutputFile(String) - Method in class loci.formats.ImageWriter

changeOutputFile(String) - Method in class loci.formats.WriterWrapper

changingElemSize - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

chanMax - Variable in class loci.formats.MinMaxCalculator

Max values for each channel.

chanMin - Variable in class loci.formats.MinMaxCalculator

Min values for each channel.

channel - Variable in class com.sun.media.imageio.stream.FileChannelImageInputStream

The FileChannel data source.

channel - Variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream

The FileChannel data destination.

channel - Variable in class loci.common.NIOByteBufferProvider

File channel to allocate or map data from.

channel - Variable in class loci.common.NIOFileHandle

The file channel backed by the random access file.

channel - Variable in class loci.common.NIOInputStream

The file channel backed by the random access file.

CHANNEL - Static variable in class loci.formats.FormatTools

Identifies the Channel dimensional type, representing a generic channel dimension.

channel - Variable in class loci.formats.in.LeicaHandler.Detector

channel - Variable in class loci.formats.in.LeicaHandler.MultiBand

channel - Variable in class loci.formats.in.PrairieMetadata.PFile

channel of this <File>.

Channel - Class in ome.xml.model

Channel() - Constructor for class ome.xml.model.Channel

Default constructor.

Channel(Element, OMEModel) - Constructor for class ome.xml.model.Channel

Constructs Channel recursively from an XML DOM tree.

Channel(Channel) - Constructor for class ome.xml.model.Channel

Copy constructor.

CHANNEL_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_AMPLIFIER_GAIN - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_CONTRAST_BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader

CHANNEL_COUNT - Static variable in class loci.tests.testng.Configuration

CHANNEL_COUNT_TAG - Static variable in class loci.formats.in.FlowSightReader

CHANNEL_DEFINITION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CHANNEL_DESCS_TAG - Static variable in class loci.formats.in.FlowSightReader

CHANNEL_DETECTOR_GAIN - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_DIM - Static variable in class loci.formats.in.CellSensReader

CHANNEL_FILTER - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_FILTER_SET - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_GAMMA_CORRECTION - Static variable in class loci.formats.in.CellSensReader

CHANNEL_INFO_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

CHANNEL_NAME - Static variable in class loci.formats.FormatTools

CHANNEL_NAME - Static variable in class loci.formats.in.CellSensReader

CHANNEL_NAME - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_NAME - Static variable in class loci.tests.testng.Configuration

CHANNEL_NAMES_TAG - Static variable in class loci.formats.in.FlowSightReader

CHANNEL_NUM - Static variable in class loci.formats.FormatTools

CHANNEL_OVERFLOW - Static variable in class loci.formats.in.CellSensReader

CHANNEL_PINHOLE_DIAMETER - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_PRIORITIES - Static variable in class loci.formats.in.LIFReader

CHANNEL_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

CHANNEL_TAG - Static variable in class loci.formats.in.SlidebookTiffReader

CHANNEL_TRANSPARENCY_VALUE - Static variable in class loci.formats.in.CellSensReader

CHANNEL_VISIBLE - Static variable in class loci.formats.in.CellSensReader

channelColor - Variable in class loci.formats.in.LeicaReader

channelColor - Variable in class loci.formats.in.ZeissLSMReader

channelColors - Variable in class loci.formats.in.BaseZeissReader

channelColors - Variable in class loci.formats.in.NativeND2Reader

ChannelDefinitionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is designed to represent a Channel Definition Box of JPEG JP2 file format.

ChannelDefinitionBox(ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided ColorModel.

ChannelDefinitionBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided content in byte array.

ChannelDefinitionBox(short[], short[], short[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided channel definitions.

ChannelDefinitionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided org.w3c.dom.Node.

channelDescs - Variable in class loci.formats.in.FlowSightReader

ChannelFiller - Class in loci.formats

For indexed color data representing true color, factors out the indices, replacing them with the color table values directly.

ChannelFiller() - Constructor for class loci.formats.ChannelFiller

Constructs a ChannelFiller around a new image reader.

ChannelFiller(IFormatReader) - Constructor for class loci.formats.ChannelFiller

Constructs a ChannelFiller with a given reader.

channelFiller - Variable in class loci.plugins.in.ImportProcess

ChannelImageInputStreamSpi - Class in com.sun.media.imageioimpl.stream

ChannelImageInputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi

ChannelImageOutputStreamSpi - Class in com.sun.media.imageioimpl.stream

ChannelImageOutputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi

channelIndices - Variable in class loci.formats.in.BaseZeissReader

channelInfos - Variable in class loci.formats.in.CellVoyagerReader

channelLengths - Variable in class loci.formats.in.ICSReader

The length of each channel axis.

channelLinks - Variable in class ome.xml.model.Annotation

channelMap - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

channelMax - Variable in class loci.formats.in.ImarisHDFReader

ChannelMerger - Class in loci.formats

Logic to automatically merge channels in a file.

ChannelMerger() - Constructor for class loci.formats.ChannelMerger

Constructs a ChannelMerger around a new image reader.

ChannelMerger(IFormatReader) - Constructor for class loci.formats.ChannelMerger

Constructs a ChannelMerger with the given reader.

channelMin - Variable in class loci.formats.in.ImarisHDFReader

channelName - Variable in class loci.formats.in.BaseZeissReader

channelName - Variable in class loci.formats.in.ImarisHDFReader

channelName - Variable in class loci.formats.in.MetamorphHandler

channelName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

channelName - Variable in class loci.formats.in.OperettaReader.Plane

channelName - Variable in class loci.formats.in.PrairieMetadata.PFile

channelName attribute of this <File>.

channelName - Variable in class loci.formats.in.SISReader

channelName - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

channelNames - Variable in class loci.formats.in.BDReader

channelNames - Variable in class loci.formats.in.CellSensReader.Pyramid

channelNames - Variable in class loci.formats.in.FlexReader

channelNames - Variable in class loci.formats.in.FlowSightReader

channelNames - Variable in class loci.formats.in.FluoviewReader

channelNames - Variable in class loci.formats.in.InCellReader

channelNames - Variable in class loci.formats.in.LeicaReader

channelNames - Variable in class loci.formats.in.LIFReader

channelNames - Variable in class loci.formats.in.ND2Handler

channelNames - Variable in class loci.formats.in.ScanrReader

channelNames - Variable in class loci.formats.in.SlidebookTiffReader

channelNames - Variable in class loci.formats.in.VolocityReader.Stack

channelNames - Variable in class loci.formats.in.ZeissLSMReader

channelNumber - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

channelNumber - Variable in class loci.plugins.util.RecordedImageProcessor

channelOrder - Variable in class loci.formats.in.PhotoshopTiffReader

ChannelRef - Class in ome.xml.model

ChannelRef() - Constructor for class ome.xml.model.ChannelRef

Default constructor.

ChannelRef(Element, OMEModel) - Constructor for class ome.xml.model.ChannelRef

Constructs ChannelRef recursively from an XML DOM tree.

ChannelRef(ChannelRef) - Constructor for class ome.xml.model.ChannelRef

Copy constructor.

channels - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

channels - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Channel definitions

channels - Variable in class loci.formats.codec.CodecOptions

Number of channels.

channels - Variable in class loci.formats.in.FV1000Reader

channels - Variable in class loci.formats.in.LeicaHandler

channels - Variable in class loci.formats.in.LiFlimReader

channels - Variable in class loci.formats.in.MicromanagerReader.Position

channels - Variable in class loci.formats.in.PrairieReader

List of active channels.

channels - Variable in class loci.formats.in.SDTInfo

channels - Variable in class loci.formats.in.SDTReader

Number of spectral channels.

channels - Variable in class loci.formats.in.TextReader

List of channel labels.

channels - Variable in class loci.formats.in.ZeissCZIReader

channels - Variable in class loci.formats.in.ZeissTIFFReader

channels - Variable in class ome.xml.model.FilterSet

channels - Variable in class ome.xml.model.Pixels

ChannelSeparator - Class in loci.formats

Logic to automatically separate the channels in a file.

ChannelSeparator() - Constructor for class loci.formats.ChannelSeparator

Constructs a ChannelSeparator around a new image reader.

ChannelSeparator(IFormatReader) - Constructor for class loci.formats.ChannelSeparator

Constructs a ChannelSeparator with the given reader.

channelSeparator - Variable in class loci.plugins.in.ImportProcess

channelsPerTimepoint - Variable in class loci.formats.in.InCellReader

channelTypes - Variable in class loci.formats.in.ICSReader

The type of each channel axis.

channelWavelengths - Variable in class loci.formats.in.CellSensReader.Pyramid

chanStore - Variable in class loci.formats.in.SDTReader

CHAR - Static variable in class loci.formats.in.CellSensReader

CHAR - Static variable in class loci.formats.in.GatanReader

character - Variable in class loci.poi.hssf.record.UnicodeString.FormatRun

characterCellHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

characterCellWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

characters(char[], int, int) - Method in class loci.common.xml.MetadataHandler

characters(char[], int, int) - Method in class loci.formats.in.AFIReader.AFIHandler

characters(char[], int, int) - Method in class loci.formats.in.BioRadSCNReader.SCNHandler

characters(char[], int, int) - Method in class loci.formats.in.FEITiffReader.FEIHandler

characters(char[], int, int) - Method in class loci.formats.in.FlexReader.FlexHandler

characters(char[], int, int) - Method in class loci.formats.in.ImaconReader.ImaconHandler

characters(char[], int, int) - Method in class loci.formats.in.InCellReader.InCellHandler

characters(char[], int, int) - Method in class loci.formats.in.IvisionReader.IvisionHandler

characters(char[], int, int) - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

characters(char[], int, int) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler

characters(char[], int, int) - Method in class loci.formats.in.OperettaReader.OperettaHandler

characters(char[], int, int) - Method in class loci.formats.in.ScanrReader.ScanrHandler

characters(char[], int, int) - Method in class loci.formats.in.ZeissTIFFHandler

characters(char[], int, int) - Method in class loci.formats.out.OMEXMLWriter.OMEHandler

charData - Variable in class loci.formats.in.FlexReader.FlexHandler

CHARS - Static variable in class loci.formats.tools.AsciiImage

charset - Variable in class loci.formats.in.BaseZeissReader.Shape

ChartFormatRecord - Class in loci.poi.hssf.record

Class ChartFormatRecord

ChartFormatRecord() - Constructor for class loci.poi.hssf.record.ChartFormatRecord

ChartFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartFormatRecord

Constructs a ChartFormatRecord record and sets its fields appropriately.

ChartRecord - Class in loci.poi.hssf.record

The chart record is used to define the location and size of a chart.

ChartRecord() - Constructor for class loci.poi.hssf.record.ChartRecord

ChartRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartRecord

Constructs a Chart record and sets its fields appropriately.

chartTypeManuallyFormatted - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

charWidths - Variable in class loci.poi.hssf.usermodel.FontDetails

CHECK - Static variable in class loci.formats.in.ZeissLMSReader

check(int) - Method in class loci.poi.util.CommonsLogger

Check if a logger is enabled to log at the specified level

check(int) - Method in class loci.poi.util.NullLogger

Check if a logger is enabled to log at the specified level

check(int) - Method in class loci.poi.util.POILogger

Check if a logger is enabled to log at the specified level

check(int) - Method in class loci.poi.util.SystemOutLogger

Check if a logger is enabled to log at the specified level

checkBounds(int) - Method in class loci.poi.hssf.usermodel.HSSFCell

checkBufferSize(IFormatReader, int) - Static method in class loci.formats.FormatTools

checkBufferSize(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools

Checks that the given buffer size is large enough to hold a w * h image as returned by the given reader.

checkBytePadding() - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput

Checks for past errors in the decoding process by verifying the byte padding with an alternating sequence of 0's and 1's.

checkCells() - Method in class loci.poi.hssf.model.Sheet

checkClass(String) - Static method in class loci.plugins.util.LibraryChecker

Checks whether the given class is available.

checkClassDependency(Class<? extends Object>) - Method in class loci.common.services.AbstractService

Checks a given class dependency at runtime to ensure that a given class will be available.

checkClassDependency(Class<? extends Object>) - Method in class loci.formats.services.WlzServiceImpl

checkCommentImageJ(String) - Method in class loci.formats.in.TiffReader

checkCommentMetamorph(String) - Method in class loci.formats.in.TiffReader

checkComplexData(byte[]) - Static method in class loci.poi.ddf.EscherArrayProperty

checkDefaultBackgroundFills() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

Checks if the background and foreground fills are set correctly when one or the other is set to the default color.

checkDimsLoc(Record, int) - Method in class loci.poi.hssf.model.Sheet

in the event the record is a dimensions record, resets both the loc index and dimsloc index

checkElement(Element, String) - Method in class loci.formats.in.PrairieMetadata

Checks that the given element has the specified name.

checkEndOfPassFF(byte[], int[], boolean[], int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Ensures that at the end of a non-terminated coding pass there is not a 0xFF byte, modifying the stored rates if necessary.

checkExternSheet(int) - Method in class loci.poi.hssf.model.Workbook

returns the extern sheet number for specific sheet number , if this sheet doesn't exist in extern sheet , add it

checkFileSize() - Method in class ome.jxr.parser.FileParser

checkFileStructureVersion() - Method in class ome.jxr.parser.FileParser

checkGDISignaturePresence() - Method in class ome.jxr.parser.DatastreamParser

checkHeader() - Method in class loci.formats.tiff.TiffParser

Checks the TIFF header.

checkHeaderBOM() - Method in class ome.jxr.parser.FileParser

checkHeaderLength() - Method in class ome.jxr.parser.FileParser

checkIfValidJpegXr() - Method in class ome.jxr.parser.FileParser

checkImageJ() - Static method in class loci.plugins.util.LibraryChecker

Checks whether ImageJ is new enough for the Bio-Formats plugins.

checkImageJ(String, String) - Static method in class loci.plugins.util.LibraryChecker

Returns true the current ImageJ version is greater than or equal to the specified version.

checkImageJ(String, String, String) - Static method in class loci.plugins.util.LibraryChecker

Returns true the current ImageJ version is greater than or equal to the specified version.

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

checkJava() - Static method in class loci.plugins.util.LibraryChecker

Checks for a new enough version of the Java Runtime Environment.

checkKey(String, String) - Method in class loci.formats.in.MetamorphHandler

Check if the value needs to be saved.

checkKey(String, String) - Method in class loci.plugins.in.ImporterOptions

Tests whether the given boolean key is set in the specified options.

checkKey(Object) - Static method in class loci.poi.util.BinaryTree

check a key for validity (non-null and implements Comparable)

checkKeyAndValue(Object, Object) - Static method in class loci.poi.util.BinaryTree

check a key and a value for validity (non-null and implements Comparable)

checkLatest(String, String) - Static method in class loci.plugins.config.InstallWizard

checkLibrary() - Static method in class jj2000.j2k.util.NativeServices

Checks if the library SHLIB_NAME is already loaded and attempts to load if not yet loaded.

checkLibrary(LibraryChecker.Library, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker

Checks for a required library.

checkLibrary(String, String, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker

Checks whether the given class is available; if not, adds the specified JAR file name to the hash set (presumably to report it missing to the user).

checkMarkerLength(DataInputStream, String) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Checks that the marker segment length is correct.

checkMismatch(boolean, boolean, int, String) - Static method in class loci.tests.testng.FormatWriterTest

checkMismatch(int, int, int, String) - Static method in class loci.tests.testng.FormatWriterTest

checkMismatch(String, String, int, String) - Static method in class loci.tests.testng.FormatWriterTest

checkMissing(HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker

Reports missing libraries in the given hash set to the user.

checkNonNullComparable(Object, int) - Static method in class loci.poi.util.BinaryTree

check if an object is fit to be proper input ...

checkObsoleteOptions() - Method in class loci.plugins.in.ImporterOptions

Handles obsolete macro keys, for backward compatibility.

checkParams(int, byte[], int, int, int, int) - Method in class loci.formats.FormatWriter

Ensure that the arguments that are being passed to saveBytes(...) are valid.

checkParams - Variable in class loci.formats.out.TiffWriter

Whether or not to check the parameters passed to saveBytes.

checkParamsEmpty(ImageTypeSpecifier, int, int, List) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

checkPerformed - Static variable in class loci.plugins.in.UpgradeDialog

Whether an upgrade check has already been performed this session.

checkPlaneNumber(IFormatReader, int) - Static method in class loci.formats.FormatTools

Checks that the given plane number is valid for the given reader.

checkPlaneParameters(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Convenience method for checking that the plane number, tile size and buffer sizes are all valid for the given reader.

checkPoints(int) - Method in enum loci.formats.in.BaseZeissReader.FeatureType

checkPredTerm() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Checks for past errors in the decoding process using the predictable error resilient termination.

checkProgMode(String) - Method in class jj2000.j2k.entropy.ProgressionSpec

Check if the progression mode exists and if so, return its integer value.

checkQTLibrary() - Method in class loci.formats.gui.LegacyQTTools

Checks whether QTJava is available, throwing an exception if not.

checkRange(int, int, int, String) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

checkReadParamBandSettingsWrapper(ImageReadParam, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Wrapper for the protected method checkReadParamBandSettings.

checkRecordPosition() - Method in class loci.poi.hssf.record.RecordInputStream

checkRows() - Method in class loci.poi.hssf.model.Sheet

checkSampleModel(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

checkSampleModel(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

checkSheets(int) - Method in class loci.poi.hssf.model.Workbook

if we're trying to address one more sheet than we have, go ahead and add it! if we're trying to address >1 more than we have throw an exception!

checkSuffix(String, String) - Static method in class loci.formats.FormatHandler

Performs suffix matching for the given filename.

checkSuffix(String, String[]) - Static method in class loci.formats.FormatHandler

Performs suffix matching for the given filename.

checkTargetErrors() - Method in class jj2000.j2k.util.ThreadPool

Checks that no error or runtime exception in any target have occurred so far.

checkTileSize(IFormatReader, int, int, int, int) - Static method in class loci.formats.FormatTools

Checks that the given tile size is valid for the given reader.

checkTime(long, int, long, long) - Method in class loci.formats.in.TextReader

checkUnit(String, String...) - Method in class loci.formats.in.ICSReader

Verifies that a unit matches the expected value.

checkUTF8(InputStream) - Static method in class loci.common.xml.XMLTools

Checks the given stream for a UTF-8 BOM header, skipping it if present.

checkUUIDInfoBox(Node, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Check whether the child with a name childName exists.

checkValidId(String) - Static method in class loci.common.Location

Checks that the given id points at a valid data stream.

checkValue(Object) - Static method in class loci.poi.util.BinaryTree

check a value for validity (non-null and implements Comparable)

Child - Interface in loci.poi.poifs.property

This interface defines methods for finding and setting sibling Property instances

childCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

childNames - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

childPolicy - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

childRecords - Variable in class loci.poi.ddf.EscherContainerRecord

childRecords - Variable in class loci.poi.ddf.UnknownEscherRecord

children - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

children - Variable in class loci.poi.hssf.model.Node

CHIP_SIZE_X - Static variable in class loci.formats.in.FluoviewReader

CHIP_SIZE_Y - Static variable in class loci.formats.in.FluoviewReader

chksum - Variable in class loci.formats.in.SDTInfo

chosenDocumentDescriptors - Variable in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

CHROMA_SUBSAMPLING - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor

chromaCenteringX - Variable in class ome.jxr.parser.DatastreamParser

chromaCenteringY - Variable in class ome.jxr.parser.DatastreamParser

chromaSubsampleH - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

chromaSubsampleV - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

CHUNK_SIZE - Static variable in class loci.formats.UpgradeChecker

Number of bytes to read from the CI server at a time.

chunkSizes - Variable in class loci.formats.in.NativeQTReader

Number of bytes in each plane.

CHZ - Static variable in class ome.units.UNITS

CI_SERVER - Static variable in class loci.formats.UpgradeChecker

Location of the OME continuous integration server.

cIndex - Variable in class loci.formats.in.BaseZeissReader

cIndex - Variable in class loci.plugins.util.DataBrowser

CIRCLE - Static variable in class loci.formats.in.FV1000Reader

CIRCLE - Static variable in class loci.formats.in.ZeissLSMReader

CIRCLE_3POINT - Static variable in class loci.formats.in.ZeissLSMReader

cLabel - Variable in class loci.formats.gui.DataConverter

clamp(float) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

clamp(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

clamp2(float) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

CLASS_ARRAY - Static variable in class loci.poi.hssf.record.formula.Ptg

CLASS_IMAGE_5D - Static variable in class loci.plugins.in.ImporterOptions

CLASS_LABELS - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

CLASS_REF - Static variable in class loci.poi.hssf.record.formula.Ptg

CLASS_VALUE - Static variable in class loci.poi.hssf.record.formula.Ptg

CLASS_VIEW_5D - Static variable in class loci.plugins.in.ImporterOptions

classes - Variable in class loci.formats.ClassList

List of classes.

classes - Variable in class loci.formats.in.CellH5Reader

ClassID - Class in loci.poi.hpsf

Represents a class ID (16 bytes).

ClassID(byte[], int) - Constructor for class loci.poi.hpsf.ClassID

Creates a ClassID and reads its value from a byte array.

ClassID() - Constructor for class loci.poi.hpsf.ClassID

Creates a ClassID and initializes its value with 0x00 bytes.

classID - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's "classID" field.

ClassList<T> - Class in loci.formats

ClassList is a list of classes for use with ImageReader or ImageWriter, parsed from a configuration file such as readers.txt or writers.txt.

ClassList(Class<T>) - Constructor for class loci.formats.ClassList

Constructs a list of classes, initially empty.

ClassList(String, Class<T>) - Constructor for class loci.formats.ClassList

Constructs a list of classes from the given configuration file.

ClassList(String, Class<T>, Class<?>) - Constructor for class loci.formats.ClassList

Constructs a list of classes from the given configuration file.

classList - Variable in class loci.formats.FileStitcher

CLEAN_FAX_DATA_ERRORS_CORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

A value to be used with the "CleanFaxData" tag.

CLEAN_FAX_DATA_ERRORS_UNCORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

A value to be used with the "CleanFaxData" tag.

CLEAN_FAX_DATA_NO_ERRORS - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

A value to be used with the "CleanFaxData" tag.

cleanStaleCacheEntries() - Static method in class loci.common.Location

Remove any cached directory listings that have expired.

cleanup() - Method in class loci.formats.Memoizer

cleanup() - Method in class loci.tests.testng.SubResolutionTest

cleanuppass(DataBlk, MQDecoder, int, int[], int[], boolean) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Performs the cleanup pass on the specified data and bit-plane.

cleanuppass(CBlkWTData, MQCoder, boolean, int, int[], int[], int[], int[], int[], int[], int, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Performs the cleanup pass on the specified data and bit-plane.

clear() - Method in class loci.formats.codec.ByteVector

clear() - Method in class loci.poi.hpsf.MutableSection

Removes all properties from the section including 0 (dictionary) and 1 (codepage).

clear() - Method in class loci.poi.hssf.record.EscherAggregate

clear() - Method in class loci.poi.util.BinaryTree

Removes all mappings from this map

clear(int) - Method in class loci.poi.util.BitField

Clear the bits.

clear() - Method in class loci.poi.util.DoubleList

Removes all of the elements from this list.

clear() - Method in class loci.poi.util.IntList

Removes all of the elements from this list.

clear() - Method in class loci.poi.util.ShortList

Removes all of the elements from this list.

clear() - Method in class ome.xml.model.ReferenceList

CLEAR_CODE - Static variable in class loci.formats.codec.LZWCodec

clearByte(byte) - Method in class loci.poi.util.BitField

Clear the bits.

clearCode_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

reserved clear code based on code size

clearDestImage() - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

clearDirectoryListingsCache() - Static method in class loci.common.Location

Clear the directory listings cache.

clearEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

clearFormatting() - Method in class loci.poi.hssf.record.UnicodeString

clearFormatting() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Removes any formatting that may have been applied to the string.

clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

clearSections() - Method in class loci.poi.hpsf.MutablePropertySet

Removes all sections from this property set.

clearSections() - Method in class loci.poi.hpsf.SpecialPropertySet

clearSeries() - Method in class loci.plugins.in.ImporterOptions

clearShort(short) - Method in class loci.poi.util.BitField

Clear the bits.

clearSubRecords() - Method in class loci.poi.hssf.record.ObjRecord

ClearTable(int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

clearTargetErrors() - Method in class jj2000.j2k.util.ThreadPool

Clears the current target error conditions, if any.

clearXML() - Method in class loci.formats.in.ZeissCZIReader.Metadata

clength - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Length of codestream

cLengths - Variable in class loci.plugins.util.DataBrowser

clip(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

clip(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

clip(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

clip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

clipDestination(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

CLIPPING - Static variable in class loci.formats.in.CellSensReader

CLIPPING_MAGIC_STRING - Static variable in class loci.formats.in.VolocityClippingReader

CLIPPING_STATE - Static variable in class loci.formats.in.CellSensReader

clippingData - Variable in class loci.formats.in.VolocityReader.Stack

clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

CLOCKWISE - Static variable in class loci.formats.in.FluoviewReader

clone() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Clones the directory and all the fields contained therein.

clone() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

clone() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

clone() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

clone() - Method in class jj2000.j2k.ModuleSpec

clone() - Method in class loci.formats.CoreMetadata

clone(IFormatReader, int) - Method in class loci.formats.CoreMetadata

clone() - Method in class loci.formats.SwappableMetadata

clone(IFormatReader, int) - Method in class loci.formats.SwappableMetadata

clone() - Method in class loci.poi.ddf.EscherRecord

Escher records may need to be clonable in the future.

clone() - Method in class loci.poi.ddf.EscherTextboxRecord

clone() - Method in class loci.poi.ddf.UnknownEscherRecord

clone() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

clone() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Performs a deep clone of the record

clone() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

clone() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Performs a deep clone of the record

clone() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Performs a deep clone of the record

clone() - Method in class loci.poi.hssf.record.AreaFormatRecord

clone() - Method in class loci.poi.hssf.record.AreaRecord

clone() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

clone() - Method in class loci.poi.hssf.record.AxisOptionsRecord

clone() - Method in class loci.poi.hssf.record.AxisParentRecord

clone() - Method in class loci.poi.hssf.record.AxisRecord

clone() - Method in class loci.poi.hssf.record.AxisUsedRecord

clone() - Method in class loci.poi.hssf.record.BarRecord

clone() - Method in class loci.poi.hssf.record.BlankRecord

clone() - Method in class loci.poi.hssf.record.BOFRecord

clone() - Method in class loci.poi.hssf.record.BoolErrRecord

clone() - Method in class loci.poi.hssf.record.BottomMarginRecord

clone() - Method in class loci.poi.hssf.record.CalcCountRecord

clone() - Method in class loci.poi.hssf.record.CalcModeRecord

clone() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

clone() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

clone() - Method in class loci.poi.hssf.record.ChartRecord

clone() - Method in class loci.poi.hssf.record.ColumnInfoRecord

clone() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

clone() - Method in class loci.poi.hssf.record.ContinueRecord

Clone this record.

clone() - Method in class loci.poi.hssf.record.DataFormatRecord

clone() - Method in class loci.poi.hssf.record.DatRecord

clone() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

clone() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

clone() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

clone() - Method in class loci.poi.hssf.record.DeltaRecord

clone() - Method in class loci.poi.hssf.record.DimensionsRecord

clone() - Method in class loci.poi.hssf.record.EndSubRecord

clone() - Method in class loci.poi.hssf.record.EOFRecord

clone() - Method in class loci.poi.hssf.record.FilePassRecord

clone() - Method in class loci.poi.hssf.record.FileSharingRecord

Clone this record.

clone() - Method in class loci.poi.hssf.record.FontBasisRecord

clone() - Method in class loci.poi.hssf.record.FontIndexRecord

clone() - Method in class loci.poi.hssf.record.FooterRecord

clone() - Method in class loci.poi.hssf.record.formula.AddPtg

clone() - Method in class loci.poi.hssf.record.formula.Area3DPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaAPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaErrPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaNAPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaNPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaNVPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaVPtg

clone() - Method in class loci.poi.hssf.record.formula.ArrayPtg

clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgA

clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgV

clone() - Method in class loci.poi.hssf.record.formula.AttrPtg

clone() - Method in class loci.poi.hssf.record.formula.BoolPtg

clone() - Method in class loci.poi.hssf.record.formula.ConcatPtg

clone() - Method in class loci.poi.hssf.record.formula.DividePtg

clone() - Method in class loci.poi.hssf.record.formula.EqualPtg

clone() - Method in class loci.poi.hssf.record.formula.ErrPtg

clone() - Method in class loci.poi.hssf.record.formula.ExpPtg

clone() - Method in class loci.poi.hssf.record.formula.FuncPtg

clone() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

clone() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

clone() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Implementation of clone method from Object

clone() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

clone() - Method in class loci.poi.hssf.record.formula.IntPtg

clone() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

clone() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Implementation of clone method from Object

clone() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

clone() - Method in class loci.poi.hssf.record.formula.MemErrPtg

clone() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

clone() - Method in class loci.poi.hssf.record.formula.MissingArgPtg

clone() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

clone() - Method in class loci.poi.hssf.record.formula.NamePtg

clone() - Method in class loci.poi.hssf.record.formula.NameXPtg

clone() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

clone() - Method in class loci.poi.hssf.record.formula.NumberPtg

clone() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

clone() - Method in class loci.poi.hssf.record.formula.PercentPtg

clone() - Method in class loci.poi.hssf.record.formula.PowerPtg

clone() - Method in class loci.poi.hssf.record.formula.Ptg

clone() - Method in class loci.poi.hssf.record.formula.RangePtg

clone() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

clone() - Method in class loci.poi.hssf.record.formula.RefAPtg

clone() - Method in class loci.poi.hssf.record.formula.ReferencePtg

clone() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

clone() - Method in class loci.poi.hssf.record.formula.RefNAPtg

clone() - Method in class loci.poi.hssf.record.formula.RefNPtg

clone() - Method in class loci.poi.hssf.record.formula.RefNVPtg

clone() - Method in class loci.poi.hssf.record.formula.RefVPtg

clone() - Method in class loci.poi.hssf.record.formula.StringPtg

clone() - Method in class loci.poi.hssf.record.formula.SubtractPtg

clone() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

clone() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

clone() - Method in class loci.poi.hssf.record.formula.UnionPtg

clone() - Method in class loci.poi.hssf.record.formula.UnknownPtg

clone() - Method in class loci.poi.hssf.record.FormulaRecord

clone() - Method in class loci.poi.hssf.record.FrameRecord

clone() - Method in class loci.poi.hssf.record.GridsetRecord

clone() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

clone() - Method in class loci.poi.hssf.record.GutsRecord

clone() - Method in class loci.poi.hssf.record.HCenterRecord

clone() - Method in class loci.poi.hssf.record.HeaderRecord

clone() - Method in class loci.poi.hssf.record.IndexRecord

clone() - Method in class loci.poi.hssf.record.IterationRecord

clone() - Method in class loci.poi.hssf.record.LabelRecord

clone() - Method in class loci.poi.hssf.record.LabelSSTRecord

clone() - Method in class loci.poi.hssf.record.LeftMarginRecord

clone() - Method in class loci.poi.hssf.record.LegendRecord

clone() - Method in class loci.poi.hssf.record.LineFormatRecord

clone() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

clone() - Method in class loci.poi.hssf.record.LinkedDataRecord

clone() - Method in class loci.poi.hssf.record.MergeCellsRecord

clone() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

clone() - Method in class loci.poi.hssf.record.NumberRecord

clone() - Method in class loci.poi.hssf.record.ObjectLinkRecord

clone() - Method in class loci.poi.hssf.record.ObjectProtectRecord

clone() - Method in class loci.poi.hssf.record.ObjRecord

clone() - Method in class loci.poi.hssf.record.PageBreakRecord

clone() - Method in class loci.poi.hssf.record.PaneRecord

clone() - Method in class loci.poi.hssf.record.PasswordRecord

Clone this record.

clone() - Method in class loci.poi.hssf.record.PlotAreaRecord

clone() - Method in class loci.poi.hssf.record.PlotGrowthRecord

clone() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

clone() - Method in class loci.poi.hssf.record.PrintHeadersRecord

clone() - Method in class loci.poi.hssf.record.PrintSetupRecord

clone() - Method in class loci.poi.hssf.record.ProtectRecord

clone() - Method in class loci.poi.hssf.record.Record

clone() - Method in class loci.poi.hssf.record.RefModeRecord

clone() - Method in class loci.poi.hssf.record.RightMarginRecord

clone() - Method in class loci.poi.hssf.record.RKRecord

clone() - Method in class loci.poi.hssf.record.RowRecord

clone() - Method in class loci.poi.hssf.record.SaveRecalcRecord

clone() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

clone() - Method in class loci.poi.hssf.record.SCLRecord

clone() - Method in class loci.poi.hssf.record.SelectionRecord

clone() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

clone() - Method in class loci.poi.hssf.record.SeriesIndexRecord

clone() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

clone() - Method in class loci.poi.hssf.record.SeriesListRecord

clone() - Method in class loci.poi.hssf.record.SeriesRecord

clone() - Method in class loci.poi.hssf.record.SeriesTextRecord

clone() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

clone() - Method in class loci.poi.hssf.record.SharedFormulaRecord

clone() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

clone() - Method in class loci.poi.hssf.record.StringRecord

clone() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

clone() - Method in class loci.poi.hssf.record.TextRecord

clone() - Method in class loci.poi.hssf.record.TickRecord

clone() - Method in class loci.poi.hssf.record.TopMarginRecord

clone() - Method in class loci.poi.hssf.record.UnicodeString

clone() - Method in class loci.poi.hssf.record.UnitsRecord

clone() - Method in class loci.poi.hssf.record.UnknownRecord

Unlike the other Record.clone methods this is a shallow clone

clone() - Method in class loci.poi.hssf.record.ValueRangeRecord

clone() - Method in class loci.poi.hssf.record.VCenterRecord

clone() - Method in class loci.poi.hssf.record.WindowTwoRecord

clone() - Method in class loci.poi.hssf.record.WSBoolRecord

clone() - Method in class mdbtools.libmdb.MdbColumn

clone() - Method in class mdbtools.libmdb.MdbSarg

cloneArray(int[]) - Method in class loci.poi.hssf.usermodel.HSSFPolygon

cloneImageReadParam(ImageReadParam, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

Creates a copy of param.

cloneNode(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

cloneSheet() - Method in class loci.poi.hssf.model.Sheet

Clones the low level records of this sheet and returns the new sheet instance.

cloneSheet(HSSFWorkbook) - Method in class loci.poi.hssf.usermodel.HSSFSheet

cloneSheet(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create an HSSFSheet from an existing sheet in the HSSFWorkbook.

cloneStringIfRequired() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Called whenever the unicode string is modified.

close() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

Invokes the superclass method and sets the internal reference to the source FileChannel to null.

close() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Invokes the superclass method, writes any unwritten data, and sets the internal reference to the source FileChannel to null.

close() - Method in class com.sun.media.imageio.stream.RawImageInputStream

close() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

close() - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter

close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

close() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Closes the underlying resource (file, stream, network connection, etc.).

close() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Writes the EOC marker and closes the underlying stream.

close() - Method in class jj2000.j2k.image.input.ImgReader

Closes the underlying file or network connection from where the image data is being read.

close() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Closes the underlying RandomAccessFile from where the image data is being read.

close() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Closes the buffered random access file

close() - Method in interface jj2000.j2k.io.RandomAccessIO

Closes the I/O stream.

close() - Method in class jj2000.j2k.util.ISRandomAccessIO

Closes this object for reading as well as the wrapped InputStream, if not already closed.

close() - Method in class loci.common.ByteArrayHandle

close() - Method in class loci.common.CBZip2InputStream

close() - Method in class loci.common.FileHandle

close() - Method in interface loci.common.IRandomAccess

Closes this random access stream and releases any system resources associated with the stream.

close() - Method in class loci.common.NIOFileHandle

close() - Method in class loci.common.NIOInputStream

Closes the streams.

close() - Method in class loci.common.RandomAccessInputStream

Closes the streams.

close() - Method in class loci.common.RandomAccessOutputStream

close() - Method in class loci.common.StreamHandle

close() - Method in class loci.common.ZipHandle

close(boolean) - Method in class loci.formats.ChannelSeparator

close() - Method in class loci.formats.codec.JPEGTileDecoder

close(boolean) - Method in class loci.formats.DelegateReader

close() - Method in class loci.formats.FileStitcher

close(boolean) - Method in class loci.formats.FileStitcher

close(boolean) - Method in class loci.formats.FormatReader

close() - Method in class loci.formats.FormatReader

close() - Method in class loci.formats.FormatWriter

close() - Method in class loci.formats.gui.PreviewPane

Closes the underlying image reader.

close(boolean) - Method in interface loci.formats.IFormatReader

Closes the currently open file.

close(boolean) - Method in class loci.formats.ImageReader

close() - Method in class loci.formats.ImageReader

close() - Method in class loci.formats.ImageWriter

close(boolean) - Method in class loci.formats.in.AFIReader

close(boolean) - Method in class loci.formats.in.AIMReader

close(boolean) - Method in class loci.formats.in.AliconaReader

close(boolean) - Method in class loci.formats.in.AmiraReader

close(boolean) - Method in class loci.formats.in.AnalyzeReader

close(boolean) - Method in class loci.formats.in.APLReader

close(boolean) - Method in class loci.formats.in.APNGReader

close(boolean) - Method in class loci.formats.in.AVIReader

close(boolean) - Method in class loci.formats.in.BaseZeissReader

close(boolean) - Method in class loci.formats.in.BDReader

close(boolean) - Method in class loci.formats.in.BioRadReader

close(boolean) - Method in class loci.formats.in.BioRadSCNReader

close(boolean) - Method in class loci.formats.in.BMPReader

close(boolean) - Method in class loci.formats.in.BrukerReader

close(boolean) - Method in class loci.formats.in.BurleighReader

close(boolean) - Method in class loci.formats.in.CanonRawReader

close(boolean) - Method in class loci.formats.in.CellH5Reader

close(boolean) - Method in class loci.formats.in.CellomicsReader

close(boolean) - Method in class loci.formats.in.CellSensReader

close(boolean) - Method in class loci.formats.in.CellWorxReader

close(boolean) - Method in class loci.formats.in.DeltavisionReader

close(boolean) - Method in class loci.formats.in.DicomReader

close(boolean) - Method in class loci.formats.in.DNGReader

close(boolean) - Method in class loci.formats.in.EPSReader

close(boolean) - Method in class loci.formats.in.FakeReader

close(boolean) - Method in class loci.formats.in.FEIReader

close(boolean) - Method in class loci.formats.in.FEITiffReader

close(boolean) - Method in class loci.formats.in.FilePatternReader

close() - Method in class loci.formats.in.FilePatternReader

close(boolean) - Method in class loci.formats.in.FitsReader

close(boolean) - Method in class loci.formats.in.FlexReader

close(boolean) - Method in class loci.formats.in.FlowSightReader

close(boolean) - Method in class loci.formats.in.FluoviewReader

close(boolean) - Method in class loci.formats.in.FujiReader

close(boolean) - Method in class loci.formats.in.FV1000Reader

close(boolean) - Method in class loci.formats.in.GatanDM2Reader

close(boolean) - Method in class loci.formats.in.GatanReader

close(boolean) - Method in class loci.formats.in.GIFReader

close(boolean) - Method in class loci.formats.in.HamamatsuVMSReader

close(boolean) - Method in class loci.formats.in.HitachiReader

close(boolean) - Method in class loci.formats.in.HRDGDFReader

close(boolean) - Method in class loci.formats.in.ICSReader

close(boolean) - Method in class loci.formats.in.IM3Reader

close(boolean) - Method in class loci.formats.in.ImaconReader

close(boolean) - Method in class loci.formats.in.ImageIOReader

close(boolean) - Method in class loci.formats.in.ImagicReader

close(boolean) - Method in class loci.formats.in.ImarisHDFReader

close(boolean) - Method in class loci.formats.in.ImarisReader

close(boolean) - Method in class loci.formats.in.IMODReader

close(boolean) - Method in class loci.formats.in.ImprovisionTiffReader

close(boolean) - Method in class loci.formats.in.ImspectorReader

close(boolean) - Method in class loci.formats.in.InCell3000Reader

close(boolean) - Method in class loci.formats.in.InCellReader

close(boolean) - Method in class loci.formats.in.InveonReader

close(boolean) - Method in class loci.formats.in.IPLabReader

close(boolean) - Method in class loci.formats.in.IPWReader

close(boolean) - Method in class loci.formats.in.IvisionReader

close(boolean) - Method in class loci.formats.in.JEOLReader

close(boolean) - Method in class loci.formats.in.JPEG2000Reader

close(boolean) - Method in class loci.formats.in.JPEGReader

close(boolean) - Method in class loci.formats.in.JPXReader

close(boolean) - Method in class loci.formats.in.KhorosReader

close(boolean) - Method in class loci.formats.in.KodakReader

close(boolean) - Method in class loci.formats.in.L2DReader

close(boolean) - Method in class loci.formats.in.LegacyQTReader

close(boolean) - Method in class loci.formats.in.LeicaReader

close(boolean) - Method in class loci.formats.in.LeicaSCNReader

close(boolean) - Method in class loci.formats.in.LiFlimReader

close(boolean) - Method in class loci.formats.in.LIFReader

close(boolean) - Method in class loci.formats.in.LIMReader

close(boolean) - Method in class loci.formats.in.MetamorphReader

close(boolean) - Method in class loci.formats.in.MetamorphTiffReader

close(boolean) - Method in class loci.formats.in.MIASReader

close(boolean) - Method in class loci.formats.in.MicromanagerReader

close(boolean) - Method in class loci.formats.in.MINCReader

close(boolean) - Method in class loci.formats.in.MinimalTiffReader

close(boolean) - Method in class loci.formats.in.MNGReader

close(boolean) - Method in class loci.formats.in.MolecularImagingReader

close(boolean) - Method in class loci.formats.in.MRCReader

close(boolean) - Method in class loci.formats.in.MRWReader

close(boolean) - Method in class loci.formats.in.NAFReader

close(boolean) - Method in class loci.formats.in.NativeND2Reader

close(boolean) - Method in class loci.formats.in.NativeQTReader

close(boolean) - Method in class loci.formats.in.NDPIReader

close(boolean) - Method in class loci.formats.in.NDPISReader

close(boolean) - Method in class loci.formats.in.NiftiReader

close(boolean) - Method in class loci.formats.in.NikonElementsTiffReader

close(boolean) - Method in class loci.formats.in.NikonReader

close(boolean) - Method in class loci.formats.in.NikonTiffReader

close(boolean) - Method in class loci.formats.in.NRRDReader

close(boolean) - Method in class loci.formats.in.OBFReader

close(boolean) - Method in class loci.formats.in.OMETiffReader

close(boolean) - Method in class loci.formats.in.OMEXMLReader

close(boolean) - Method in class loci.formats.in.OpenlabRawReader

close(boolean) - Method in class loci.formats.in.OpenlabReader

close(boolean) - Method in class loci.formats.in.OperettaReader

close(boolean) - Method in class loci.formats.in.PCIReader

close(boolean) - Method in class loci.formats.in.PCORAWReader

close(boolean) - Method in class loci.formats.in.PCXReader

close(boolean) - Method in class loci.formats.in.PDSReader

close(boolean) - Method in class loci.formats.in.PerkinElmerReader

close(boolean) - Method in class loci.formats.in.PGMReader

close(boolean) - Method in class loci.formats.in.PhotoshopTiffReader

close(boolean) - Method in class loci.formats.in.PictReader

close(boolean) - Method in class loci.formats.in.PQBinReader

close(boolean) - Method in class loci.formats.in.PrairieReader

close(boolean) - Method in class loci.formats.in.PSDReader

close(boolean) - Method in class loci.formats.in.QuesantReader

close(boolean) - Method in class loci.formats.in.RHKReader

close(boolean) - Method in class loci.formats.in.SBIGReader

close(boolean) - Method in class loci.formats.in.ScanrReader

close(boolean) - Method in class loci.formats.in.ScreenReader

close(boolean) - Method in class loci.formats.in.SDTReader

close(boolean) - Method in class loci.formats.in.SIFReader

close(boolean) - Method in class loci.formats.in.SimplePCITiffReader

close(boolean) - Method in class loci.formats.in.SISReader

close(boolean) - Method in class loci.formats.in.SlideBook6Reader

close(boolean) - Method in class loci.formats.in.SlidebookReader

close(boolean) - Method in class loci.formats.in.SlidebookTiffReader

close(boolean) - Method in class loci.formats.in.SpiderReader

close(boolean) - Method in class loci.formats.in.SVSReader

close(boolean) - Method in class loci.formats.in.TargaReader

close(boolean) - Method in class loci.formats.in.TCSReader

close(boolean) - Method in class loci.formats.in.TextReader

close(boolean) - Method in class loci.formats.in.TiffReader

close(boolean) - Method in class loci.formats.in.TileJPEGReader

close(boolean) - Method in class loci.formats.in.TillVisionReader

close(boolean) - Method in class loci.formats.in.TopometrixReader

close(boolean) - Method in class loci.formats.in.TrestleReader

close(boolean) - Method in class loci.formats.in.UBMReader

close(boolean) - Method in class loci.formats.in.UnisokuReader

close(boolean) - Method in class loci.formats.in.VarianFDFReader

close(boolean) - Method in class loci.formats.in.VeecoReader

close(boolean) - Method in class loci.formats.in.VisitechReader

close(boolean) - Method in class loci.formats.in.VolocityClippingReader

close(boolean) - Method in class loci.formats.in.VolocityReader

close(boolean) - Method in class loci.formats.in.WlzReader

close(boolean) - Method in class loci.formats.in.ZeissCZIReader

close() - Method in class loci.formats.in.ZeissCZIReader.Segment

close(boolean) - Method in class loci.formats.in.ZeissLMSReader

close(boolean) - Method in class loci.formats.in.ZeissLSMReader

close(boolean) - Method in class loci.formats.in.ZeissTIFFReader

close(boolean) - Method in class loci.formats.in.ZeissZVIReader

close(boolean) - Method in class loci.formats.in.ZipReader

close() - Method in class loci.formats.Memoizer

close(boolean) - Method in class loci.formats.Memoizer

close() - Method in interface loci.formats.Memoizer.Deser

close() - Method in class loci.formats.Memoizer.KryoDeser

close(boolean) - Method in class loci.formats.MinMaxCalculator

close() - Method in class loci.formats.out.APNGWriter

close() - Method in class loci.formats.out.AVIWriter

close() - Method in class loci.formats.out.CellH5Writer

close() - Method in class loci.formats.out.ICSWriter

close() - Method in class loci.formats.out.JavaWriter

close() - Method in class loci.formats.out.LegacyQTWriter

close() - Method in class loci.formats.out.OMETiffWriter

close() - Method in class loci.formats.out.OMEXMLWriter

close() - Method in class loci.formats.out.QTWriter

close() - Method in class loci.formats.out.TiffWriter

close() - Method in class loci.formats.out.V3DrawWriter

close() - Method in class loci.formats.out.WlzWriter

close(boolean) - Method in class loci.formats.ReaderWrapper

close() - Method in class loci.formats.ReaderWrapper

close() - Method in interface loci.formats.services.EXIFService

close() - Method in class loci.formats.services.EXIFServiceImpl

close() - Method in interface loci.formats.services.JHDFService

Closes and resets the service.

close() - Method in class loci.formats.services.JHDFServiceImpl

close() - Method in interface loci.formats.services.JPEGTurboService

close() - Method in class loci.formats.services.JPEGTurboServiceImpl

close() - Method in interface loci.formats.services.MDBService

Close the currently initialized file.

close() - Method in class loci.formats.services.MDBServiceImpl

close() - Method in interface loci.formats.services.MetakitService

close() - Method in class loci.formats.services.MetakitServiceImpl

close() - Method in interface loci.formats.services.NetCDFService

Closes and resets the service.

close() - Method in class loci.formats.services.NetCDFServiceImpl

close() - Method in interface loci.formats.services.POIService

Close the current POI file system.

close() - Method in class loci.formats.services.POIServiceImpl

close() - Method in interface loci.formats.services.WlzService

Closes the file.

close() - Method in class loci.formats.services.WlzServiceImpl

close() - Method in class loci.formats.tiff.OnDemandLongArray

close() - Method in class loci.formats.tiff.TiffSaver

Closes the output stream if not null.

close() - Method in class loci.formats.WriterWrapper

close() - Method in class loci.plugins.config.TextAreaWriter

Closing a TextAreaWriter does nothing.

close() - Method in class loci.plugins.macro.LociFunctions

close() - Method in class loci.plugins.util.VirtualImagePlus

close() - Method in class loci.plugins.util.VirtualReader

close() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Closes this input stream and releases any system resources associated with the stream.

close() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Closes this output stream and releases any system resources associated with this stream.

close() - Method in class loci.poi.util.BlockingInputStream

close() - Method in class loci.tests.testng.FormatReaderTest

close() - Method in class mdbtools.examples.MemoryRandomAccess

close() - Method in class mdbtools.jdbc2.File

close() - Method in class mdbtools.libmdb.MdbFile

close() - Method in class mdbtools.libmdb.MdbHandle

close() - Method in interface mdbtools.publicapi.RandomAccess

close() - Method in class ome.jxr.JXRReader

close() - Method in class ome.jxr.parser.DatastreamParser

close() - Method in class ome.jxr.parser.FileParser

close() - Method in class ome.jxr.parser.IFDParser

close() - Method in class ome.jxr.parser.Parser

close() - Method in class ome.metakit.MetakitReader

Close the reader and release any resources in use.

close() - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Free the native structures associated with this compressor instance.

close() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Free the native structures associated with this decompressor instance.

CLOSED_ARROW - Static variable in class loci.formats.in.ZeissLSMReader

CLOSED_BEZIER - Static variable in class loci.formats.in.ZeissLSMReader

CLOSED_CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty

CLOSED_POLYGON - Static variable in class loci.poi.ddf.EscherShapePathProperty

CLOSED_POLYLINE - Static variable in class loci.formats.in.ZeissLSMReader

closeFile() - Method in class loci.formats.in.SlideBook6Reader

closeFileOnly() - Method in class loci.plugins.macro.LociFunctions

cm - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

cm - Variable in class loci.formats.FormatWriter

Default color model.

CM - Static variable in class ome.units.UNITS

cNames - Variable in class loci.formats.in.ImprovisionTiffReader

co - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

co2Percent - Variable in class loci.formats.in.ZeissCZIReader

co2Percent - Variable in class ome.xml.model.ImagingEnvironment

COARSE_FRAME_IFD - Static variable in class loci.formats.in.CellSensReader

COARSE_PYRAMID_LEVEL - Static variable in class loci.formats.in.CellSensReader

COBOL - Static variable in class loci.common.DateTools

COBOL_EPOCH - Static variable in class loci.common.DateTools

coc - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the COC marker segments found in main and first tile-part header.

COC - Static variable in interface jj2000.j2k.codestream.Markers

Coding style component (COC): 0xFF53

COC_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for COC marker segment found

cod - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the COD marker segments found in main and first tile-part header.

COD - Static variable in interface jj2000.j2k.codestream.Markers

Coding style default (COD): 0xFF52

COD_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for COD marker segment found

code - Variable in enum loci.formats.codec.CompressionType

Code for the compression.

code - Variable in enum loci.formats.codec.JPEG2000BoxType

Code for the box type.

code - Variable in enum loci.formats.codec.JPEG2000SegmentMarker

Code for the segment marker.

code - Variable in class loci.formats.in.FV1000Reader

code - Variable in enum loci.formats.tiff.IFDType

Code for the IFD type in the actual TIFF file.

code - Variable in enum loci.formats.tiff.PhotoInterp

Code for the IFD type in the actual TIFF file.

code - Variable in enum loci.formats.tiff.TiffCompression

Code for the TIFF compression in the actual TIFF file.

codeBlockSize - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies the maximum code-block size to use for tile-component.

codeBlockSize - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies the maximum code-block size to use for tile-component.

codeBlockSize - Variable in class loci.formats.codec.JPEG2000CodecOptions

The maximum code-block size to use per tile-component as it would be provided to: J2KImageWriteParam.setCodeBlockSize(int[]) (WRITE).

Codec - Interface in loci.formats.codec

This class is an interface for any kind of compression or decompression.

codec - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

codec - Variable in class loci.formats.gui.DataConverter

codec - Variable in class loci.formats.in.NativeND2Reader

Codec to use when decompressing pixel data.

codec - Variable in class loci.formats.in.NativeQTReader

Video codec used by this movie.

codec - Variable in class loci.formats.out.LegacyQTWriter

The codec to use.

codec - Variable in class loci.formats.out.QTWriter

The codec to use.

codec - Variable in enum loci.formats.tiff.TiffCompression

TIFF compression codec.

CODEC_ANIMATION - Static variable in class loci.formats.out.QTWriter

Value indicating Animation codec.

CODEC_CINEPAK - Static variable in class loci.formats.out.QTWriter

Value indicating Cinepak codec.

CODEC_H_263 - Static variable in class loci.formats.out.QTWriter

Value indicating H.263 codec.

CODEC_MOTION_JPEG_B - Static variable in class loci.formats.out.QTWriter

Value indicating Motion JPEG-B codec.

CODEC_MPEG_4 - Static variable in class loci.formats.out.QTWriter

Value indicating MPEG-4 codec.

CODEC_RAW - Static variable in class loci.formats.out.QTWriter

Value indicating Raw codec.

CODEC_SORENSON - Static variable in class loci.formats.out.QTWriter

Value indicating Sorenson codec.

CODEC_SORENSON_3 - Static variable in class loci.formats.out.QTWriter

Value indicating Sorenson 3 codec.

codecName - Variable in enum loci.formats.tiff.TiffCompression

Name of the TIFF compression codec.

CodecOptions - Class in loci.formats.codec

Options for compressing and decompressing data.

CodecOptions() - Constructor for class loci.formats.codec.CodecOptions

Construct a new CodecOptions.

CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.CodecOptions

Construct a new CodecOptions using the given CodecOptions.

codecOptions - Variable in class loci.formats.tiff.TiffParser

Codec options to be used when decoding compressed pixel data.

CodedCBlk - Class in jj2000.j2k.entropy

This is the generic class to store coded (compressed) code-block.

CodedCBlk() - Constructor for class jj2000.j2k.entropy.CodedCBlk

Creates a new CodedCBlk object wit the default values and without allocating any space for its members.

CodedCBlk(int, int, int, byte[]) - Constructor for class jj2000.j2k.entropy.CodedCBlk

Creates a new CodedCBlk object with the specified values.

CodedCBlkDataSrcDec - Interface in jj2000.j2k.entropy.decoder

This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.

CodedCBlkDataSrcEnc - Interface in jj2000.j2k.entropy.encoder

This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.

CodedEnum - Interface in loci.common.enumeration

Enumeration which is coded.

CODEPAGE - Static variable in class loci.poi.hssf.model.Workbook

constant used to set the "codepage" wherever "codepage" is set in records (which is duplciated in more than one record)

CODEPAGE - Static variable in class loci.poi.hssf.record.CodepageRecord

the likely correct value for CODEPAGE (at least for US versions).

CODEPAGE - Static variable in class loci.poi.hssf.record.InterfaceHdrRecord

suggested (and probably correct) default

CodepageRecord - Class in loci.poi.hssf.record

Title: Codepage Record

CodepageRecord() - Constructor for class loci.poi.hssf.record.CodepageRecord

CodepageRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CodepageRecord

Constructs a CodepageRecord and sets its fields appropriately

codepageToEncoding(int) - Static method in class loci.poi.hpsf.VariantSupport

Turns a codepage number into the equivalent character encoding's name.

codeSegSymbol - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Inserts an error resilience segmentation symbol in the MQ codeword at the end of each bit-plane (cleanup pass).

codeSize_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

base underlying code size of data being compressed 8 for TIFF, 1 to 8 for GIF

CODESTREAM_VERSION - Static variable in class ome.jxr.constants.File

codeStreamLength - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

The lengths of the codestreams in the fileformat

CodestreamManipulator - Class in jj2000.j2k.util

This class takes a legal JPEG 2000 codestream and performs some manipulation on it.

CodestreamManipulator(File, int, int, boolean, boolean, boolean, boolean) - Constructor for class jj2000.j2k.util.CodestreamManipulator

Instantiates a codestream manipulator..

codestreamOffset - Variable in class loci.formats.in.JPEG2000MetadataParser

Offset to first contiguous codestream.

codestreamPixelType - Variable in class loci.formats.in.JPEG2000MetadataParser

Pixel type as specified in the JPEG 2000 codestream..

codeStreamPos - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

The positions of the codestreams in the fileformat

codestreamSizeC - Variable in class loci.formats.in.JPEG2000MetadataParser

Number of channels the image as specified in the JPEG 2000 codestream.

codestreamSizeX - Variable in class loci.formats.in.JPEG2000MetadataParser

Width of the image as specified in the JPEG 2000 codestream.

codestreamSizeY - Variable in class loci.formats.in.JPEG2000MetadataParser

Height of the image as specified in the JPEG 2000 codestream.

CodestreamWriter - Class in jj2000.j2k.codestream.writer

This is the abstract class for writing to a bit stream.

CodestreamWriter(int) - Constructor for class jj2000.j2k.codestream.writer.CodestreamWriter

Allocates this object and initializes the maximum numner of bytes.

codeSymbol(int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This function performs the arithmetic encoding of one symbol.

codeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This function performs the arithmetic encoding of several symbols together.

codingRangeCbCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

codingRangeY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

codingRangeY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

col - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

col - Variable in class loci.formats.in.OperettaReader.Plane

col - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

col - Variable in class loci.poi.hssf.usermodel.HSSFComment

col - Variable in class loci.poi.hssf.util.CellReference

col - Variable in class ome.metakit.ColumnMap

col1 - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor

col2 - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor

col_fixed_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

col_from - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

upper right hand corner col

col_num - Variable in class mdbtools.libmdb.MdbColumn

col_num_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

col_prec - Variable in class mdbtools.libmdb.MdbColumn

col_scale - Variable in class mdbtools.libmdb.MdbColumn

col_size - Variable in class mdbtools.libmdb.MdbColumn

col_size_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

col_to - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

lower right hand corner col

col_type - Variable in class mdbtools.libmdb.MdbColumn

colAbs - Variable in class loci.poi.hssf.util.CellReference

colapsed - Static variable in class loci.poi.hssf.record.RowRecord

colBreaks - Variable in class loci.poi.hssf.model.Sheet

colCount - Variable in class loci.formats.in.BaseZeissReader

colFrom - Variable in class loci.poi.hssf.util.Region

collapseColInfoRecords(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

collapseColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

collapsed - Static variable in class loci.poi.hssf.record.ColumnInfoRecord

collapseRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

collect - Variable in class mdbtools.libmdb.MdbStatistics

collection - Variable in class loci.formats.in.LeicaHandler

collection - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

COLLECTION_VOLUME - Static variable in class loci.formats.in.CellSensReader

colName - Variable in class loci.formats.in.InCellReader

color - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

color - Variable in class loci.formats.in.LeicaHandler.ROI

color - Variable in class loci.formats.in.LIFReader.ROI

color - Variable in class loci.formats.in.ZeissCZIReader.Channel

color - Variable in class ome.xml.model.Channel

Color - Class in ome.xml.model.primitives

Primitive type that represents an RGBA color.

Color(Integer) - Constructor for class ome.xml.model.primitives.Color

Color(int, int, int, int) - Constructor for class ome.xml.model.primitives.Color

color - Variable in class ome.xml.model.Well

color16 - Variable in class loci.formats.in.IvisionReader

COLOR_BAR - Static variable in class loci.formats.in.FV1000Reader

COLOR_MAP - Static variable in class loci.formats.in.CanonRawReader

COLOR_MAP - Static variable in class loci.formats.in.DNGReader

COLOR_MAP - Static variable in class loci.formats.in.NikonReader

COLOR_MAP - Static variable in class loci.formats.tiff.IFD

COLOR_MAP_1 - Static variable in class loci.formats.in.MRWReader

COLOR_MAP_2 - Static variable in class loci.formats.in.MRWReader

COLOR_MODE - Static variable in class loci.formats.in.NikonReader

COLOR_MODE_COLORIZED - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_COMPOSITE - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_CUSTOM - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_DEFAULT - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_GRAYSCALE - Static variable in class loci.plugins.in.ImporterOptions

COLOR_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

normal type of black color.

COLOR_RED - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Dark Red color

COLOR_SPACE - Static variable in class loci.formats.in.CellSensReader

COLOR_SPACE - Static variable in class loci.formats.tiff.IFD

COLOR_SPACE_SRGB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ColorSpace" tag.

COLOR_SPACE_UNCALIBRATED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ColorSpace" tag.

colorConvert - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

A TIFFColorConverter object describing the color space of the encoded pixel data, or null.

colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

colorConverter - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

colorCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

ColorDialog - Class in loci.plugins.in

Bio-Formats Importer custom color chooser dialog box.

ColorDialog(ImportProcess) - Constructor for class loci.plugins.in.ColorDialog

colorFormat - Variable in enum ome.jxr.ifd.PixelFormat

colorize - Variable in class loci.plugins.util.BFVirtualStack

Colorizer - Class in loci.plugins.in

Logic for colorizing images.

Colorizer(ImportProcess) - Constructor for class loci.plugins.in.Colorizer

colorMap - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the ColorMap tag.

colorMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

colorMap - Variable in class loci.formats.in.TargaReader

colorModeChoice - Variable in class loci.plugins.in.MainDialog

colorModel - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The image's ColorModel.

colorModel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

colorModel - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

colorModel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

colorModel - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Create a IndexColorModel from the palette box if there is one

colorModel - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

The color model of the image to be compressed.

colorModel - Variable in class loci.formats.codec.CodecOptions

Color model to use when constructing an image (WRITE).

colorPlanes - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

colorPlanes - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

colorResolution - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

COLORS - Variable in class loci.formats.in.CellH5Reader

colors - Variable in class loci.formats.in.ImarisHDFReader

colors - Variable in class loci.formats.in.IMODReader

colors - Variable in class loci.formats.in.NativeND2Reader

colors - Variable in class loci.formats.in.ND2Handler

colorsImportant - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

colorSpace - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

COLORSPACE - Static variable in class loci.formats.in.CellSensReader

colorSpaceNames - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

colorSpaceType - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Color specification

ColorSpecificationBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Color Specification Box of JPEG JP2 file format.

ColorSpecificationBox(byte, byte, byte, int, ICC_Profile) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates a ColorSpecificationBox from the provided data elements.

ColorSpecificationBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates a ColorSpecificationBox from the provided byte array.

ColorSpecificationBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Constructs a ColorSpecificationBox based on the provided org.w3c.dom.Node.

colorsUsed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

colorTables - Variable in class loci.formats.in.GIFReader

colorTableSizes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

COLOUR_SPECIFICATION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

colRelative - Variable in class loci.poi.hssf.record.formula.Area3DPtg

colRelative - Variable in class loci.poi.hssf.record.formula.AreaPtg

colRelative - Variable in class loci.poi.hssf.record.formula.Ref3DPtg

colRelative - Variable in class loci.poi.hssf.record.formula.ReferencePtg

cols - Variable in class loci.formats.in.CellSensReader

colT - Variable in class loci.formats.in.SDTInfo

colTo - Variable in class loci.poi.hssf.util.Region

column - Variable in class loci.formats.in.FlexReader.FlexFile

column - Variable in class loci.formats.in.OMEXMLReader.BinData

column - Variable in class loci.formats.tools.AmiraParameters

column - Variable in class loci.poi.hssf.record.formula.AreaPtg

column - Variable in class loci.poi.hssf.record.formula.ReferencePtg

column - Variable in class mdbtools.dbengine.sql.FQColumn

Column - Class in ome.metakit

Class representing a column in a Metakit database file.

Column(String) - Constructor for class ome.metakit.Column

Construct a new column from the given string representation.

column - Variable in class ome.xml.model.Well

COLUMN_NAMING_CONVENTION - Static variable in class ome.specification.XMLMockObjects

The default naming convention for columns.

ColumnComparator - Class in mdbtools.dbengine

Compare the values from a column in two rows

ColumnComparator() - Constructor for class mdbtools.dbengine.ColumnComparator

ColumnInfoRecord - Class in loci.poi.hssf.record

Title: ColumnInfo Record

ColumnInfoRecord() - Constructor for class loci.poi.hssf.record.ColumnInfoRecord

ColumnInfoRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ColumnInfoRecord

Constructs a ColumnInfo record and sets its fields appropriately

ColumnInfoRecordsAggregate - Class in loci.poi.hssf.record.aggregates

ColumnInfoRecordsAggregate() - Constructor for class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

ColumnMap - Class in ome.metakit

Class representating a column mapping in a Metakit database file.

ColumnMap(Column, RandomAccessInputStream, int) - Constructor for class ome.metakit.ColumnMap

columnNames - Variable in class mdbtools.dbengine.Tests.SimpleDataSourceTable

columnNamingConvention - Variable in class ome.xml.model.Plate

COLUMNS - Static variable in class loci.formats.gui.DataConverter

COLUMNS - Static variable in class loci.formats.in.DicomReader

columns - Variable in class loci.poi.hssf.model.Sheet

columns - Variable in class mdbtools.dbengine.sql.Select

columns - Variable in class mdbtools.libmdb.MdbTableDef

columns - Static variable in class mdbtools.tests.ColumnTest

columns - Variable in class ome.metakit.MetakitReader

COLUMNS - Static variable in class ome.specification.XMLMockObjects

The default number of columns for a plate.

columns - Variable in class ome.xml.model.Plate

ColumnTest - Class in mdbtools.tests

ColumnTest() - Constructor for class mdbtools.tests.ColumnTest

com - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the COM marker segments found in main and tile-part headers.

COM - Static variable in interface jj2000.j2k.codestream.Markers

Comment (COM): 0xFF64

COM - Static variable in class loci.formats.codec.LosslessJPEGCodec

com.luratech.lwf - package com.luratech.lwf

com.sun.media.imageio.plugins.bmp - package com.sun.media.imageio.plugins.bmp

Package containing the public classes used by the Sun BMP plug-in for the Image I/O Framework.

com.sun.media.imageio.plugins.jpeg2000 - package com.sun.media.imageio.plugins.jpeg2000

Package containing the public classes used by the Sun JPEG 2000 plug-in for the Image I/O Framework.

com.sun.media.imageio.plugins.pnm - package com.sun.media.imageio.plugins.pnm

Package containing the public classes used by the Sun PNM plug-in for the Image I/O Framework.

com.sun.media.imageio.plugins.tiff - package com.sun.media.imageio.plugins.tiff

Package containing the public classes used by the TIFF plug-in for the Image I/O Framework.

com.sun.media.imageio.stream - package com.sun.media.imageio.stream

Provides ImageInputStream and ImageOutputStream classes for use with the Java Image I/O Framework.

com.sun.media.imageioimpl.common - package com.sun.media.imageioimpl.common

com.sun.media.imageioimpl.plugins.bmp - package com.sun.media.imageioimpl.plugins.bmp

com.sun.media.imageioimpl.plugins.clib - package com.sun.media.imageioimpl.plugins.clib

com.sun.media.imageioimpl.plugins.gif - package com.sun.media.imageioimpl.plugins.gif

com.sun.media.imageioimpl.plugins.jpeg - package com.sun.media.imageioimpl.plugins.jpeg

com.sun.media.imageioimpl.plugins.jpeg2000 - package com.sun.media.imageioimpl.plugins.jpeg2000

com.sun.media.imageioimpl.plugins.pcx - package com.sun.media.imageioimpl.plugins.pcx

com.sun.media.imageioimpl.plugins.png - package com.sun.media.imageioimpl.plugins.png

com.sun.media.imageioimpl.plugins.pnm - package com.sun.media.imageioimpl.plugins.pnm

com.sun.media.imageioimpl.plugins.raw - package com.sun.media.imageioimpl.plugins.raw

com.sun.media.imageioimpl.plugins.tiff - package com.sun.media.imageioimpl.plugins.tiff

com.sun.media.imageioimpl.plugins.wbmp - package com.sun.media.imageioimpl.plugins.wbmp

com.sun.media.imageioimpl.stream - package com.sun.media.imageioimpl.stream

com.sun.media.jai.imageioimpl - package com.sun.media.jai.imageioimpl

com.sun.media.jai.operator - package com.sun.media.jai.operator

Provides JAI operations which read and write images using the Java Image I/O Framework.

COM_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for COM marker segment found

ComboFileFilter - Class in loci.formats.gui

A file filter that recognizes files from a union of other filters.

ComboFileFilter(FileFilter[], String) - Constructor for class loci.formats.gui.ComboFileFilter

Constructs a new filter from a list of other filters.

COMMENT - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

comment - Variable in class loci.formats.in.FluoviewReader

comment - Variable in class loci.formats.in.MicromanagerReader.Position

comment - Variable in class loci.formats.in.QuesantReader

comment - Variable in class loci.poi.hssf.usermodel.HSSFCell

COMMENT_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer

COMMENT_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer

CommentAnnotation - Class in ome.xml.model

CommentAnnotation() - Constructor for class ome.xml.model.CommentAnnotation

Default constructor.

CommentAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.CommentAnnotation

Constructs CommentAnnotation recursively from an XML DOM tree.

CommentAnnotation(CommentAnnotation) - Constructor for class ome.xml.model.CommentAnnotation

Copy constructor.

commentAnnotations - Variable in class ome.xml.model.StructuredAnnotations

commentDelimiter - Variable in class loci.common.IniParser

comments - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

comments - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

comments - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

The comments.

comments - Variable in class loci.formats.in.JPEG2000MetadataParser

List of comments stored in the file.

comments - Variable in class loci.formats.in.SVSReader

CommentShape - Class in loci.poi.hssf.model

Represents a cell comment.

CommentShape(HSSFComment, int) - Constructor for class loci.poi.hssf.model.CommentShape

Creates the low-level records for a comment.

commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Writes the header data to the bit stream, if it has not been already done.

commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Writes the header data in the codestream and actualize ndata with the header length.

COMMON_PART - Static variable in enum ome.jxr.ifd.PixelFormat

commonLogFormatted(int, String, Object[]) - Method in class loci.poi.util.POILogger

CommonObjectDataSubRecord - Class in loci.poi.hssf.record

The common object data record is used to store all common preferences for an excel object.

CommonObjectDataSubRecord() - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord

CommonObjectDataSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord

Constructs a CommonObjectData record and sets its fields appropriately.

CommonsLogger - Class in loci.poi.util

A logger class that strives to make it as easy as possible for developers to write log calls, while simultaneously making those calls as cheap as possible by performing lazy evaluation of the log message.

CommonsLogger() - Constructor for class loci.poi.util.CommonsLogger

comp - Variable in class jj2000.j2k.roi.encoder.ROI

The components for which the ROI is relevant

comp - Variable in class loci.formats.gui.CacheIndicator

COMP_POS_RES_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType

The bit stream is Component/Position/Resolution/Layer progressive : 4

COMPANION_SUFFIXES - Static variable in class loci.formats.in.TiffReader

companionFile - Variable in class loci.formats.in.TiffReader

companionFiles - Variable in class loci.formats.in.DicomReader

compare(Object, Object) - Method in class loci.formats.cache.CacheStrategy

Default comparator orders dimensional positions based on distance from the current position, taking into account axis priorities and planar ordering.

compare(String, String) - Method in class loci.formats.in.MetamorphTiffReader.NumericComparator

compare(Object, Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

compare method.

compare(Comparable, Comparable) - Static method in class loci.poi.util.BinaryTree

Compare two objects

compareTo(Object) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Compares this TIFFField with another TIFFField by comparing the tags.

compareTo(Object) - Method in class loci.formats.gui.ComboFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.gui.ExtensionFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.gui.FormatFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.gui.NoExtensionFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.tiff.TiffIFDEntry

compareTo(TiffRational) - Method in class loci.formats.tiff.TiffRational

Compares this object with the specified object for order.

compareTo(Object) - Method in class loci.plugins.config.FormatEntry

compareTo(Object) - Method in class loci.plugins.config.LibraryEntry

compareTo(ThumbLoader.SeriesInfo) - Method in class loci.plugins.in.ThumbLoader.SeriesInfo

compareTo(Object) - Method in class loci.poi.hpsf.Section.PropertyListEntry

Compares this Section.PropertyListEntry with another one by their offsets.

compareTo(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

compareTo(Object) - Method in class loci.poi.hssf.record.BlankRecord

compareTo(Object) - Method in class loci.poi.hssf.record.BoolErrRecord

compareTo(Object) - Method in class loci.poi.hssf.record.FormulaRecord

compareTo(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord

compareTo(Object) - Method in class loci.poi.hssf.record.NumberRecord

compareTo(Object) - Method in class loci.poi.hssf.record.RowRecord

compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString

compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Compares one rich text string to another.

compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow

compareTo(Region) - Method in class loci.poi.hssf.util.Region

Compares that the given region is the same less than or greater than this region.

compareTo(Object) - Method in class loci.poi.hssf.util.Region

compareTo(Angle) - Method in class ome.units.quantity.Angle

compareTo(ElectricPotential) - Method in class ome.units.quantity.ElectricPotential

compareTo(Frequency) - Method in class ome.units.quantity.Frequency

compareTo(Length) - Method in class ome.units.quantity.Length

compareTo(Power) - Method in class ome.units.quantity.Power

compareTo(Pressure) - Method in class ome.units.quantity.Pressure

compareTo(Temperature) - Method in class ome.units.quantity.Temperature

compareTo(Time) - Method in class ome.units.quantity.Time

compareTokens(String[], int, String[], int) - Method in class loci.formats.in.ICSReader

compatibility - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

compDef - Variable in class jj2000.j2k.ModuleSpec

The default value for each component.

compH - Variable in class jj2000.j2k.image.Tiler

The component height in the current active tile, for each component

compHeight - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

Component heights

compIdx - Variable in class jj2000.j2k.image.ImgDataJoiner

The component index associated with each ImgData

compImageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

complete - Variable in class jj2000.j2k.util.ISRandomAccessIO

complete() - Method in class loci.common.CBZip2InputStream

completedComps - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The queue of completed compressors, for each component.

COMPLEX - Static variable in class loci.formats.in.CellSensReader

COMPLEX - Static variable in class loci.formats.in.ZeissCZIReader

COMPLEX - Static variable in class loci.poi.ddf.EscherShapePathProperty

COMPLEX_FLOAT - Static variable in class loci.formats.in.ZeissCZIReader

complexData - Variable in class loci.poi.ddf.EscherComplexProperty

compMainDefDecompType - Variable in class jj2000.j2k.wavelet.WTDecompSpec

The component main default decomposition, for each component.

compMainDefLevels - Variable in class jj2000.j2k.wavelet.WTDecompSpec

The component main default decomposition levels, for each component

COMPONENT_HEIGHT - Static variable in class loci.formats.gui.CacheIndicator

COMPONENT_LOT_NUMBER - Static variable in class ome.specification.XMLMockObjects

The default lot number of a component of a microscope.

COMPONENT_MANUFACTURER - Static variable in class ome.specification.XMLMockObjects

The default manufacturer of a component of a microscope.

COMPONENT_MAPPING_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

COMPONENT_MODEL - Static variable in class ome.specification.XMLMockObjects

The default model of a component of a microscope.

COMPONENT_SERIAL_NUMBER - Static variable in class ome.specification.XMLMockObjects

The default serial number of a component of a microscope.

COMPONENT_WIDTH - Static variable in class loci.formats.gui.CacheIndicator

ComponentMappingBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Color Specification Box of JPEG JP2 file format.

ComponentMappingBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Constructs a ComponentMappingBox from the provided content byte array.

ComponentMappingBox(short[], byte[], byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Constructs a ComponentMappingBox from the provided component mapping.

ComponentMappingBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Constructs a ComponentMappingBox based on the provided org.w3c.dom.Node.

ComponentMode - Enum in ome.jxr.image

Enumeration of available image bit depth types.

ComponentMode(int) - Constructor for enum ome.jxr.image.ComponentMode

components - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

The data elements.

components - Variable in class loci.poi.poifs.filesystem.POIFSDocumentPath

COMPONENTS_CONFIGURATION - Static variable in class loci.formats.tiff.IFD

COMPONENTS_CONFIGURATION_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_CB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_CR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_DOES_NOT_EXIST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_G - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_R - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_Y - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

componentTransformation - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies to utilize the component transformation with some tiles.

componentTransformation - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies to utilize the component transformation with some tiles.

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Composes the content byte array from the data elements.

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

composeFormula(FormulaRecord) - Method in class loci.poi.hssf.dev.FormulaViewer

composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Append newString to the end of oldString.

composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Append newString to the end of oldString.

COMPR_MASKS - Static variable in class loci.formats.codec.LZWCodec

Masks for writing bits in compressor.

compress(byte[], int, int) - Method in class com.sun.media.imageioimpl.common.LZWCompressor

compress(byte[], CodecOptions) - Method in class loci.formats.codec.Base64Codec

compress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec

2D data block encoding default implementation.

compress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec

Compresses a block of data.

compress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec

Compresses a block of data.

compress(byte[], CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set: width height bitsPerSample channels interleaved littleEndian lossless

compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEGCodec

The CodecOptions parameter should have the following fields set: width height channels bitsPerSample interleaved littleEndian signed

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZOCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZWCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.MJPBCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSRLECodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSVideoCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.NikonCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.PackbitsCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.RPZACodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.TargaRLECodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.ZlibCodec

compress(byte[]) - Method in class loci.formats.out.OMEXMLWriter

Compress the given byte array using the current codec.

compress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Encodes a strip of data.

compress(byte[]) - Static method in class loci.poi.ddf.EscherBlipWMFRecord

Compress the contents of the provided array

compress(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Compress the uncompressed source image associated with this compressor instance and output a JPEG image to the given destination buffer.

compress(int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Compress the uncompressed source image associated with this compressor instance and return a buffer containing a JPEG image.

compress(BufferedImage, byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Compress the uncompressed source image stored in srcImage and output a JPEG image to the given destination buffer.

compress(BufferedImage, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Compress the uncompressed source image stored in srcImage and return a buffer containing a JPEG image.

compress(byte[], int, int, int, int, byte[], int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

compress(int[], int, int, int, int, byte[], int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

compressBuffer(int, byte[], int, int, int, int) - Method in class loci.formats.out.JPEG2000Writer

Compresses the buffer.

compressCodeBlock(int, CBlkRateDistStats, CBlkWTData, MQCoder, BitToByteOutput, ByteOutputBuffer, int[], double[], int[], boolean[], int[], int[], int, boolean, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Compresses the code-block in 'srcblk' and puts the results in 'ccb', using the specified options and temporary storage.

CompressDecompressTest - Class in loci.tests.testng

Tests the various codec used to compress and decompress data.

CompressDecompressTest() - Constructor for class loci.tests.testng.CompressDecompressTest

compressed - Variable in class loci.formats.in.NAFReader

compressed - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

compressed - Variable in class loci.formats.in.PSDReader

compressed - Variable in class loci.formats.in.SBIGReader

compressed - Variable in class loci.formats.in.TargaReader

COMPRESSED_BITS_PER_PIXEL - Static variable in class loci.formats.tiff.IFD

compressedSize - Variable in class loci.formats.in.AmiraReader.HxRLE

compressedSize - Variable in class loci.formats.in.AmiraReader.HxZip

compressedSize - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

compressedTiles - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

compression - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the Compression tag.

compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

compression - Variable in enum loci.formats.codec.CompressionType

The compression used.

compression - Variable in class loci.formats.FormatWriter

Current compression type.

compression - Variable in class loci.formats.in.AmiraReader

compression - Variable in class loci.formats.in.APNGReader

compression - Variable in class loci.formats.in.BMPReader

Compression type

compression - Variable in class loci.formats.in.LiFlimReader

compression - Variable in class loci.formats.in.OBFReader.Stack

compression - Variable in class loci.formats.in.OMEXMLReader

compression - Variable in class loci.formats.in.PhotoshopTiffReader

compression - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

COMPRESSION - Static variable in class loci.formats.tiff.IFD

COMPRESSION - Static variable in class loci.tests.testng.TiffWriterTest

The compression levels to test.

compression - Variable in class ome.xml.model.BinData

Compression - Enum in ome.xml.model.enums

Compression(String) - Constructor for enum ome.xml.model.enums.Compression

compression - Variable in class ome.xml.model.External

COMPRESSION_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the Compression attribute.

COMPRESSION_CCITT_RLE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_CCITT_T_4 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_CCITT_T_6 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_DEFLATE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_GZIP - Static variable in class loci.formats.in.LiFlimReader

COMPRESSION_J2K - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_J2K_LOSSY - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_JPEG - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_KEY - Static variable in class loci.formats.in.LiFlimReader

COMPRESSION_LZW - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_LZW - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_NONE - Static variable in class loci.formats.in.LiFlimReader

COMPRESSION_OLD_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_PACKBITS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_SUFFIXES - Static variable in class loci.formats.FormatHandler

Suffixes for supported compression types.

COMPRESSION_UNCOMPRESSED - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_ZLIB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

CompressionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Compression.

CompressionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CompressionEnumHandler

compressionNumbers - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Compression tag values for known compression types.

compressionTagValue - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The value to be assigned to the TIFF Compression tag in the TIFF image metadata.

compressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The name of the compression type supported by this compressor.

compressionType - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

compressionType - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

compressionType - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

CompressionType - Enum in loci.formats.codec

An enumeration of compression types.

CompressionType(int, String) - Constructor for enum loci.formats.codec.CompressionType

Default constructor.

compressionType - Variable in class loci.formats.in.CellSensReader

compressionTypeNames - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

compressionTypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Known TIFF compression types.

compressionTypes - Variable in class loci.formats.FormatWriter

Available compression types.

compressionTypes - Variable in class loci.formats.ImageWriter

Compression types for all file format writers.

compressor - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

compressor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

comps - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Component mapping

compSize - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

CompTransfSpec - Class in jj2000.j2k.image

This class extends ModuleSpec class in order to hold tile specifications for component transformation

CompTransfSpec(int, int, byte) - Constructor for class jj2000.j2k.image.CompTransfSpec

Constructs an empty 'CompTransfSpec' with specified number of tile and components.

computeAxisLengths() - Method in class loci.formats.FileStitcher

Computes axis length arrays, and total axis lengths.

computedBlockCRC - Variable in class loci.common.CBZip2InputStream

computedCombinedCRC - Variable in class loci.common.CBZip2InputStream

computeIndices(int) - Method in class loci.formats.FileStitcher

Gets the file index, and image index into that file, corresponding to the given global image index.

computeLength(ColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Computes the length of this box from the provided ColorModel.

computeLength(byte, ICC_Profile) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Computes the length of this box when profile is present.

computeLength(IndexColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Compute the length of this box.

computeLength(IIOMetadataNode) - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter

computeNameAndLocation() - Method in class loci.plugins.in.ImportProcess

Initializes the idName and idLoc derived values.

computePhysicalSize(int, String, String) - Method in class loci.formats.in.VarianFDFReader

Return the physical size of a pixel, in microns, along an arbitrary axis based on the supplied physical and pixel lengths of the axis.

computeRegions(Rectangle, Dimension, ImageWriteParam) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Compute the source region and destination dimensions taking any parameter settings into account.

computeRegionsWrapper(ImageReadParam, boolean, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Wrapper for the protected method computeRegions.

computeRegionsWrapper(ImageReadParam, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Wrapper for the protected method computeRegions.

computeSeriesLabels(IFormatReader) - Method in class loci.plugins.in.ImportProcess

computeSizeT(int) - Method in class loci.formats.in.PrairieReader

Scans the parsed metadata to determine the number of actual time points versus the number of actual stage positions.

computeVariableTimeInterval(IMetadata, int) - Method in class loci.plugins.in.Calibrator

compW - Variable in class jj2000.j2k.image.Tiler

The component width in the current active tile, for each component

compWidth - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

Component widths

Concat() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a Concatination

CONCAT - Static variable in class loci.poi.hssf.record.formula.ConcatPtg

ConCat - Class in mdbtools.dbengine.functions

ConCat() - Constructor for class mdbtools.dbengine.functions.ConCat

concatenate(List<ImagePlus>) - Method in class loci.plugins.in.Concatenator

Concatenates the list of images as appropriate.

concatenate(List<ImagePlus>) - Method in class loci.plugins.in.ImagePlusReader

concatenateBox - Variable in class loci.plugins.in.MainDialog

concatenateTokens(String[], int, int) - Method in class loci.formats.in.ICSReader

Concatenator - Class in loci.plugins.in

Logic for concatenating multiple images together.

Concatenator() - Constructor for class loci.plugins.in.Concatenator

ConcatPtg - Class in loci.poi.hssf.record.formula

ConcatPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ConcatPtg

ConcatPtg() - Constructor for class loci.poi.hssf.record.formula.ConcatPtg

conceal(DataBlk, int) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Conceals decoding errors detected in the last bit-plane.

CONCURRENCY_PROP_NAME - Static variable in class jj2000.j2k.util.ThreadPool

The name of the property that sets the concurrency level: jj2000.j2k.util.ThreadPool.concurrency

Condition - Class in mdbtools.dbengine.sql

Condition() - Constructor for class mdbtools.dbengine.sql.Condition

config - Variable in class loci.formats.in.PrairieMetadata

Key/value pairs from CFG and/or ENV files.

config - Variable in class loci.tests.testng.FormatReaderTest

config - Static variable in class loci.tests.testng.FormatWriterTest

configDir - Variable in class loci.tests.testng.ConfigurationTree

Base directory on the file system associated with the configuration files.

configFile - Variable in class loci.tests.testng.Configuration

configTree - Static variable in class loci.tests.testng.FormatReaderTest

Configuration tree structure containing dataset metadata.

configTree - Static variable in class loci.tests.testng.FormatWriterTest

Configuration tree structure containing dataset metadata.

Configuration - Class in loci.tests.testng

Configuration(String, String) - Constructor for class loci.tests.testng.Configuration

Configuration(IFormatReader, String) - Constructor for class loci.tests.testng.Configuration

ConfigurationTree - Class in loci.tests.testng

Stores configuration data about files in a directory structure.

ConfigurationTree(String) - Constructor for class loci.tests.testng.ConfigurationTree

Constructs a new configuration tree rooted at the given directory in the file system.

ConfigurationTree(String, String) - Constructor for class loci.tests.testng.ConfigurationTree

Constructs a new configuration tree rooted at the given directory in the file system with a custom configuration directory.

ConfigWindow - Class in loci.plugins.config

A window for managing configuration of the Bio-Formats plugins.

ConfigWindow() - Constructor for class loci.plugins.config.ConfigWindow

confirmFileType() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Checks that the RandomAccessIO begins with 'P5'

conn - Variable in class loci.common.URLHandle

Socket underlying this stream

Constants - Class in loci.common

Constants that are used within many classes in loci.common.

Constants() - Constructor for class loci.common.Constants

Constants - Class in loci.poi.hpsf

Defines constants of general use.

Constants() - Constructor for class loci.poi.hpsf.Constants

Constants - Class in mdbtools.libmdb

copied from mdbtools.h

Constants() - Constructor for class mdbtools.libmdb.Constants

construct(int, List) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

constructDialog() - Method in class loci.plugins.in.ColorDialog

constructDialog() - Method in class loci.plugins.in.CropDialog

constructDialog() - Method in class loci.plugins.in.FilePatternDialog

constructDialog() - Method in class loci.plugins.in.IdDialog

constructDialog() - Method in class loci.plugins.in.ImporterDialog

constructDialog() - Method in class loci.plugins.in.LocationDialog

constructDialog() - Method in class loci.plugins.in.MainDialog

constructDialog() - Method in class loci.plugins.in.MemoryDialog

constructDialog() - Method in class loci.plugins.in.RangeDialog

constructDialog() - Method in class loci.plugins.in.SeriesDialog

constructDialog() - Method in class loci.plugins.in.SwapDialog

constructDialog() - Method in class loci.plugins.in.UpgradeDialog

constructImage(int, int, int, int, boolean, boolean, DataBuffer) - Static method in class loci.formats.gui.AWTImageTools

Creates an image with the given DataBuffer.

constructImage(int, int, int, int, boolean, boolean, DataBuffer, ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Creates an image with the given DataBuffer.

constructImageTitle(IFormatReader, String, String, boolean) - Method in class loci.plugins.in.ImagePlusReader

constructLoader() - Static method in class loci.formats.gui.LegacyQTTools

constructorCache - Static variable in class loci.common.services.ServiceFactory

Constructor cache.

constructSliceLabel(int, IFormatReader, IMetadata, int, int, int, int) - Method in class loci.plugins.in.ImagePlusReader

consumer - Variable in class loci.formats.codec.JPEGTileDecoder

CONTAINER_TYPES - Static variable in class loci.formats.in.NativeQTReader

List of identifiers for each container atom.

contains(int, short) - Method in class loci.poi.hssf.util.Region

Answers: "is the row/column inside this range?"

contains(double) - Method in class loci.poi.util.DoubleList

Returns true if this list contains the specified element.

contains(int) - Method in class loci.poi.util.IntList

Returns true if this list contains the specified element.

contains(short) - Method in class loci.poi.util.ShortList

Returns true if this list contains the specified element.

contains(Object) - Method in class ome.xml.model.ReferenceList

containsAll(DoubleList) - Method in class loci.poi.util.DoubleList

Returns true if this list contains all of the elements of the specified collection.

containsAll(IntList) - Method in class loci.poi.util.IntList

Returns true if this list contains all of the elements of the specified collection.

containsAll(ShortList) - Method in class loci.poi.util.ShortList

Returns true if this list contains all of the elements of the specified collection.

containsAll(Collection<?>) - Method in class ome.xml.model.ReferenceList

containsKey(Object) - Method in class loci.poi.util.BinaryTree

Returns true if this map contains a mapping for the specified key.

containsPoint(int, int) - Method in class loci.common.Region

Returns true if the point specified by the given X and Y coordinates is contained within this region.

containsTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Determines whether a TIFF field with the given tag number is contained in this directory.

containsValue(int[], int) - Static method in class loci.common.DataTools

Returns true if the given value is contained in the given array.

containsValue(Object) - Method in class loci.poi.util.BinaryTree

Returns true if this map maps one or more keys to the specified value.

contentFileType - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

contentGUID - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

contents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources

context - Variable in class loci.formats.in.BaseZeissReader.Tag

CONTIGUOUS_CODESTREAM_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

ContinueRecord - Class in loci.poi.hssf.record

Title: Continue Record - Helper class used primarily for SST Records

ContinueRecord() - Constructor for class loci.poi.hssf.record.ContinueRecord

default constructor

ContinueRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ContinueRecord

Main constructor -- kinda dummy because we don't validate or fill fields

CONTRAST - Static variable in class loci.formats.in.CellSensReader

CONTRAST - Static variable in class loci.formats.tiff.IFD

CONTRAST_BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader

CONTRAST_HARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Contrast" tag.

CONTRAST_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Contrast" tag.

CONTRAST_SOFT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Contrast" tag.

CONTRAST_TARGET - Static variable in class loci.formats.in.CellSensReader

contrastMethod - Variable in class ome.xml.model.Channel

ContrastMethod - Enum in ome.xml.model.enums

ContrastMethod(String) - Constructor for enum ome.xml.model.enums.ContrastMethod

ContrastMethodEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ContrastMethod.

ContrastMethodEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

ControlPtg - Class in loci.poi.hssf.record.formula

ControlPtg() - Constructor for class loci.poi.hssf.record.formula.ControlPtg

ConversionTest - Class in loci.tests.testng

ConversionTest() - Constructor for class loci.tests.testng.ConversionTest

ConversionTest.Plane - Class in loci.tests.testng

ConversionTest.Plane(byte[], boolean, boolean, int, String) - Constructor for class loci.tests.testng.ConversionTest.Plane

convert(String, String) - Static method in class loci.formats.FormatTools

Convenience method for converting the specified input file to the specified output file.

convert(IFormatReader, IFormatWriter, String) - Static method in class loci.formats.FormatTools

Convenience method for writing all of the images and metadata obtained from the specified IFormatReader into the specified IFormatWriter.

convert - Variable in class loci.formats.gui.DataConverter

convert(long, RandomAccessInputStream, int, int, int) - Static method in class loci.poi.poifs.storage.DocumentBlock

convert a single long array into an array of DocumentBlock instances

convert(byte[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

convert a single long array into an array of SmallDocumentBlock instances

convert(BlockWritable[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

Factory for creating SmallDocumentBlocks from DocumentBlocks

ConvertAnchor - Class in loci.poi.hssf.model

$Id: ConvertAnchor.java 562536 2007-08-03 18:09:41Z yegor $

ConvertAnchor() - Constructor for class loci.poi.hssf.model.ConvertAnchor

convertBooleanAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all BooleanAnnotation attributes.

convertColStringToNum(String) - Method in class loci.poi.hssf.util.CellReference

takes in a column reference portion of a CellRef and converts it from ALPHA-26 number format to 0-based base 10.

convertCommentAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all CommentAnnotation attributes.

convertDatasets(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Dataset attributes.

convertDate(long, int) - Static method in class loci.common.DateTools

Converts the given timestamp into an ISO8601 date.

convertDate(long, int, String) - Static method in class loci.common.DateTools

Converts the given timestamp into a date string with the given format.

convertDate(long, int, String, boolean) - Static method in class loci.common.DateTools

Converts the given timestamp into a date string with the given format.

convertDoubleAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all DoubleAnnotation attributes.

convertedReader - Static variable in class loci.tests.testng.FormatWriterTest

Reader for converted files.

converter - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

converter2 - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

convertExperimenterGroups(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all ExperimenterGroup attributes.

convertExperimenters(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Experimenter attributes.

convertExperiments(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Experiment attributes.

convertFactor - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The value by which the absolute value of the data has to be divided in order to get the real absolute value.

convertFileAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all FileAnnotation attributes.

convertFromExpMantissa(int) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Converts the exponent-mantissa representation to its floating-point value.

convertGroup(HSSFShapeGroup, EscherContainerRecord, Map) - Method in class loci.poi.hssf.record.EscherAggregate

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Creates a default image metadata object and merges in the supplied metadata.

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

convertImages(MetadataRetrieve, MetadataStore, List<String>) - Static method in class loci.formats.meta.MetadataConverter

Convert all Image attributes.

convertInstruments(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Instrument attributes.

convertLabelRecords(List, int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

This is basically a kludge to deal with the now obsolete Label records.

convertLightSources(MetadataRetrieve, MetadataStore, int, List<String>) - Static method in class loci.formats.meta.MetadataConverter

Convert all LightSource attributes for the given instrument.

convertListAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all ListAnnotation attributes.

convertLongAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all LongAnnotation attributes.

convertMapAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all MapAnnotation attributes.

convertMetadata(String, IIOMetadata, IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Merges inData into outData.

convertMetadata(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Copies information from a metadata retrieval object (source) into a metadata store (destination).

convertMetadata(String, MetadataStore) - Method in interface loci.formats.services.OMEXMLService

Converts information from an OME-XML string (source) into a metadata store (destination).

convertMetadata(MetadataRetrieve, MetadataStore) - Method in interface loci.formats.services.OMEXMLService

Copies information from a metadata retrieval object (source) into a metadata store (destination).

convertMetadata(String, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl

convertMetadata(MetadataRetrieve, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl

convertNativeImageMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Converts a native com_sun_media_imageio_plugins_tiff_image_1.0 tree to a TIFFImageMetadata object.

convertNumToColString(int) - Static method in class loci.poi.hssf.util.CellReference

takes in a 0-based base-10 column and returns a ALPHA-26 representation

convertObjectToString(Object) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Converts the provided object to String

convertPatriarch(HSSFPatriarch) - Method in class loci.poi.hssf.record.EscherAggregate

convertPixelType(int) - Method in class loci.formats.in.CellSensReader

convertPixelType(int) - Method in class loci.formats.in.JPEG2000MetadataParser

convertPixelType(int) - Method in class loci.formats.in.TillVisionReader

convertPixelType(int) - Method in class loci.formats.in.ZeissCZIReader

convertPlates(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Plate attributes.

convertProjects(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Project attributes.

convertRenderedImage(RenderedImage) - Static method in class loci.formats.gui.AWTImageTools

Converts a java.awt.image.RenderedImage into a java.awt.image.BufferedImage.

convertROIs(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all ROI attributes.

convertRootAttributes(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all top-level attributes.

convertScreens(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Screen attributes.

convertShapes(HSSFShapeContainer, EscherContainerRecord, Map) - Method in class loci.poi.hssf.record.EscherAggregate

convertSharedFormulaRecord(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord

Creates a non shared formula from the shared formula counter part

convertStandardImageMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Converts a standard javax_imageio_1.0 tree to a TIFFImageMetadata object.

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Creates a default stream metadata object and merges in the supplied metadata.

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

convertTagAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all TagAnnotation attributes.

convertTermAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all TermAnnotation attributes.

convertTimestampAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all TimestampAnnotation attributes.

convertTo8Bit(short[][]) - Method in class loci.plugins.util.ImageProcessorReader

convertToBlockCount(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

convertToByte(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

convertToEscherRecords(int, int, byte[]) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

convertToExpMantissa(float) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Converts the floating point value to its exponent-mantissa representation.

convertToFloat() - Method in class loci.plugins.util.RecordedImageProcessor

convertToProperties(ListManagedBlock[]) - Static method in class loci.poi.poifs.property.PropertyFactory

Convert raw data blocks to an array of Property's

convertToRGB() - Method in class loci.plugins.util.RecordedImageProcessor

convertToShort(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

convertUnits(int) - Method in class loci.formats.in.IMODReader

convertUserModelToRecords() - Method in class loci.poi.hssf.record.EscherAggregate

convertValue(Number, Unit<Q>) - Method in class ome.units.unit.Unit

convertXMLAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all XMLAnnotation attributes.

convolve(float[], int, int) - Method in class loci.plugins.util.RecordedImageProcessor

convolve3x3(int[]) - Method in class loci.plugins.util.RecordedImageProcessor

COOKIE - Static variable in class loci.formats.in.IM3Reader

First 4 bytes of file is "1985"

COOLING_ON - Static variable in class loci.formats.in.CellSensReader

coordinate - Variable in class loci.formats.in.CellSensReader.TileCoordinate

coordinates - Variable in class loci.formats.in.BaseZeissReader

CoordInfo - Class in jj2000.j2k.codestream

This class is used to store the coordinates of objects such as code-blocks or precincts.

CoordInfo(int, int, int, int) - Constructor for class jj2000.j2k.codestream.CoordInfo

Constructor.

CoordInfo() - Constructor for class jj2000.j2k.codestream.CoordInfo

Empty contructor

copy(byte[], int, int, byte[], int) - Static method in class loci.poi.hpsf.Util

Copies a part of a byte array into another byte array.

copy(byte[], int, int) - Static method in class loci.poi.hpsf.Util

Copies bytes from a source byte array into a new byte array.

copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

copyAttributes(HSSFFont, AttributedString, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Copy text attributes from the supplied HSSFFont to Java2D AttributedString

copyBinDataList() - Method in class ome.xml.model.Mask

copyBinDataList() - Method in class ome.xml.model.Pixels

copyBits(ImageProcessor, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

copyBooleanAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyChannelList() - Method in class ome.xml.model.Pixels

copyColor(BinaryTree.Node, BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

copy the color from one node to another, dealing with the fact that one or both nodes may, in fact, be null

copyColor(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree.Node

make this node the same color as another

copyCommentAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Copies an arbitrary rectangular region of the RenderedImage into a caller-supplied WritableRaster.

copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

copyDatasetList() - Method in class ome.xml.model.OME

copyDetectorList() - Method in class ome.xml.model.Instrument

copyDichroicList() - Method in class ome.xml.model.Instrument

copyDoubleAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyExperimenterGroupList() - Method in class ome.xml.model.OME

copyExperimenterList() - Method in class ome.xml.model.OME

copyExperimentList() - Method in class ome.xml.model.OME

copyFileAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyFilterList() - Method in class ome.xml.model.Instrument

copyFilterSetList() - Method in class ome.xml.model.Instrument

copyImageList() - Method in class ome.xml.model.OME

copyInstrumentList() - Method in class ome.xml.model.OME

copyInt(byte[], int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Copies that four bytes of an integer into the byte array.

copyLightSourceList() - Method in class ome.xml.model.Instrument

copyLightSourceSettingsList() - Method in class ome.xml.model.MicrobeamManipulation

copyLinkedAnnotationList() - Method in class ome.xml.model.Annotation

copyLinkedAnnotationList() - Method in class ome.xml.model.Channel

copyLinkedAnnotationList() - Method in class ome.xml.model.Dataset

copyLinkedAnnotationList() - Method in class ome.xml.model.Detector

copyLinkedAnnotationList() - Method in class ome.xml.model.Dichroic

copyLinkedAnnotationList() - Method in class ome.xml.model.Experimenter

copyLinkedAnnotationList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedAnnotationList() - Method in class ome.xml.model.Filter

copyLinkedAnnotationList() - Method in class ome.xml.model.Image

copyLinkedAnnotationList() - Method in class ome.xml.model.Instrument

copyLinkedAnnotationList() - Method in class ome.xml.model.LightPath

copyLinkedAnnotationList() - Method in class ome.xml.model.LightSource

copyLinkedAnnotationList() - Method in class ome.xml.model.Objective

copyLinkedAnnotationList() - Method in class ome.xml.model.Plane

copyLinkedAnnotationList() - Method in class ome.xml.model.Plate

copyLinkedAnnotationList() - Method in class ome.xml.model.PlateAcquisition

copyLinkedAnnotationList() - Method in class ome.xml.model.Project

copyLinkedAnnotationList() - Method in class ome.xml.model.Reagent

copyLinkedAnnotationList() - Method in class ome.xml.model.ROI

copyLinkedAnnotationList() - Method in class ome.xml.model.Screen

copyLinkedAnnotationList() - Method in class ome.xml.model.Shape

copyLinkedAnnotationList() - Method in class ome.xml.model.Well

copyLinkedChannelList() - Method in class ome.xml.model.Annotation

copyLinkedChannelList() - Method in class ome.xml.model.FilterSet

copyLinkedDatasetList() - Method in class ome.xml.model.Annotation

copyLinkedDatasetList() - Method in class ome.xml.model.Experimenter

copyLinkedDatasetList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedDatasetList() - Method in class ome.xml.model.Image

copyLinkedDatasetList() - Method in class ome.xml.model.Project

copyLinkedDetectorList() - Method in class ome.xml.model.Annotation

copyLinkedDichroicList() - Method in class ome.xml.model.Annotation

copyLinkedEmissionFilterList() - Method in class ome.xml.model.FilterSet

copyLinkedEmissionFilterList() - Method in class ome.xml.model.LightPath

copyLinkedExcitationFilterList() - Method in class ome.xml.model.FilterSet

copyLinkedExcitationFilterList() - Method in class ome.xml.model.LightPath

copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Annotation

copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Experimenter

copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Leader

copyLinkedExperimenterList() - Method in class ome.xml.model.Annotation

copyLinkedExperimenterList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedExperimentList() - Method in class ome.xml.model.Experimenter

copyLinkedFilterList() - Method in class ome.xml.model.Annotation

copyLinkedFilterSetEmissionFilterList() - Method in class ome.xml.model.Filter

copyLinkedFilterSetExcitationFilterList() - Method in class ome.xml.model.Filter

copyLinkedFilterSetList() - Method in class ome.xml.model.Dichroic

copyLinkedImageList() - Method in class ome.xml.model.Annotation

copyLinkedImageList() - Method in class ome.xml.model.Dataset

copyLinkedImageList() - Method in class ome.xml.model.Experiment

copyLinkedImageList() - Method in class ome.xml.model.Experimenter

copyLinkedImageList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedImageList() - Method in class ome.xml.model.Instrument

copyLinkedImageList() - Method in class ome.xml.model.MicrobeamManipulation

copyLinkedImageList() - Method in class ome.xml.model.ROI

copyLinkedInstrumentList() - Method in class ome.xml.model.Annotation

copyLinkedLaserList() - Method in class ome.xml.model.Pump

copyLinkedLeaderList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedLightPathEmissionFilterList() - Method in class ome.xml.model.Filter

copyLinkedLightPathExcitationFilterList() - Method in class ome.xml.model.Filter

copyLinkedLightPathList() - Method in class ome.xml.model.Annotation

copyLinkedLightPathList() - Method in class ome.xml.model.Dichroic

copyLinkedLightSourceList() - Method in class ome.xml.model.Annotation

copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Experimenter

copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Image

copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.ROI

copyLinkedObjectiveList() - Method in class ome.xml.model.Annotation

copyLinkedPlaneList() - Method in class ome.xml.model.Annotation

copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.Annotation

copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.WellSample

copyLinkedPlateList() - Method in class ome.xml.model.Annotation

copyLinkedPlateList() - Method in class ome.xml.model.Screen

copyLinkedProjectList() - Method in class ome.xml.model.Annotation

copyLinkedProjectList() - Method in class ome.xml.model.Dataset

copyLinkedProjectList() - Method in class ome.xml.model.Experimenter

copyLinkedProjectList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedReagentList() - Method in class ome.xml.model.Annotation

copyLinkedROIList() - Method in class ome.xml.model.Annotation

copyLinkedROIList() - Method in class ome.xml.model.Image

copyLinkedROIList() - Method in class ome.xml.model.MicrobeamManipulation

copyLinkedScreenList() - Method in class ome.xml.model.Annotation

copyLinkedScreenList() - Method in class ome.xml.model.Plate

copyLinkedShapeList() - Method in class ome.xml.model.Annotation

copyLinkedWellList() - Method in class ome.xml.model.Annotation

copyLinkedWellList() - Method in class ome.xml.model.Reagent

copyLinkedWellSampleList() - Method in class ome.xml.model.Image

copyLinkedWellSampleList() - Method in class ome.xml.model.PlateAcquisition

copyListAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyLongAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyMapAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyMicrobeamManipulationList() - Method in class ome.xml.model.Experiment

copyNodeRecursively(Entry, DirectoryEntry) - Method in class loci.poi.POIDocument

Copies an Entry into a target POIFS directory, recursively

copyNodes(POIFSFileSystem, POIFSFileSystem, List) - Method in class loci.poi.POIDocument

Copies nodes from one POIFS to the other minus the excepts

copyObjectiveList() - Method in class ome.xml.model.Instrument

copyPixels(int, int, int, int, int, int, byte[], byte[], boolean) - Method in class loci.formats.in.NativeND2Reader

copyPlaneList() - Method in class ome.xml.model.Pixels

copyPlateAcquisitionList() - Method in class ome.xml.model.Plate

copyPlateList() - Method in class ome.xml.model.OME

copyProjectList() - Method in class ome.xml.model.OME

copyReagentList() - Method in class ome.xml.model.Screen

copyright - Static variable in class jj2000.j2k.JJ2KInfo

The copyright message string.

COPYRIGHT - Static variable in class loci.formats.tiff.IFD

copyROIList() - Method in class ome.xml.model.OME

copyScaled(BufferedImage, BufferedImage, Object) - Static method in class loci.formats.gui.AWTImageTools

Copies the source image into the target, applying scaling.

copyScreenList() - Method in class ome.xml.model.OME

copyShapeList() - Method in class ome.xml.model.Union

copyTagAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyTermAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyTiffDataList() - Method in class ome.xml.model.Pixels

copyTimestampAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyValues(File, byte[]) - Method in class ome.specification.XMLWriter

Copies the array to the file.

copyWellList() - Method in class ome.xml.model.Plate

copyWellSampleList() - Method in class ome.xml.model.Well

copyXMLAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

core - Variable in class loci.formats.DimensionSwapper

Core metadata associated with this dimension swapper.

core - Variable in class loci.formats.FileStitcher

Core metadata.

core - Variable in class loci.formats.FormatReader

Core metadata values.

core - Variable in class loci.formats.in.LeicaHandler

core - Variable in class loci.formats.in.ND2Handler

core - Variable in class loci.formats.in.VolocityReader.Stack

coreIndex - Variable in class loci.formats.FileStitcher

The number of the current series.

coreIndex - Variable in class loci.formats.FormatReader

The number of the current series.

coreIndexToSeries(int) - Method in class loci.formats.FileStitcher

coreIndexToSeries(int) - Method in class loci.formats.FormatReader

coreIndexToSeries(int) - Method in interface loci.formats.IFormatReader

Returns the series corresponding to the specified core index.

coreIndexToSeries(int) - Method in class loci.formats.ImageReader

coreIndexToSeries(int) - Method in class loci.formats.in.FilePatternReader

coreIndexToSeries(int) - Method in class loci.formats.ReaderWrapper

CoreMetadata - Class in loci.formats

Encompasses core metadata values.

CoreMetadata() - Constructor for class loci.formats.CoreMetadata

CoreMetadata(IFormatReader, int) - Constructor for class loci.formats.CoreMetadata

CoreMetadata(CoreMetadata) - Constructor for class loci.formats.CoreMetadata

correctForUnits(Double, String) - Method in class loci.formats.in.GatanReader

correction - Variable in class loci.formats.in.ND2Handler

correction - Variable in class loci.formats.in.NikonTiffReader

correction - Variable in class loci.formats.in.ZeissLSMReader.Recording

CORRECTION - Static variable in class ome.specification.XMLMockObjects

The default objective's correction.

Correction - Enum in ome.xml.model.enums

Correction(String) - Constructor for enum ome.xml.model.enums.Correction

correction - Variable in class ome.xml.model.Objective

correctionCollar - Variable in class loci.formats.in.ZeissCZIReader

correctionCollar - Variable in class ome.xml.model.ObjectiveSettings

CorrectionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Correction.

CorrectionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CorrectionEnumHandler

corrections - Variable in class loci.formats.in.LIFReader

CorruptedCodestreamException - Exception in jj2000.j2k.codestream

Thsi exception is thrown whenever an illegal value is read from a bit stream.

CorruptedCodestreamException() - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException

Constructs a new CorruptedCodestreamException exception with no detail message.

CorruptedCodestreamException(String) - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException

Constructs a new CorruptedCodestreamException exception with the specified detail message.

cortime - Variable in class loci.formats.in.SDTInfo

Correlation time [ms].

count - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField

The number of data items present in the field.

count - Variable in class jj2000.j2k.entropy.decoder.ByteInputBuffer

The index one greater than the last valid character in the input stream buffer

count - Variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The number of valid bytes in the buffer

count - Variable in class loci.formats.in.LeicaHandler

count() - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

count - Variable in class loci.formats.in.ZeissTIFFHandler.TagSet

COUNT - Static variable in class loci.poi.hssf.record.FnGroupCountRecord

suggested default (14 dec)

count - Variable in class loci.tests.testng.DotTestListener

Count - Class in mdbtools.dbengine.functions

Count() - Constructor for class mdbtools.dbengine.functions.Count

count - Variable in enum ome.jxr.ifd.IFDEntry

countBits(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

countBlocks() - Method in interface loci.poi.poifs.filesystem.BATManaged

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

countBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.property.PropertyTable

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Return the number of BigBlock's this instance uses

countedByteRead() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns a byte read from the RandomAccessIO.

COUNTER_CLOCKWISE - Static variable in class loci.formats.in.FluoviewReader

countImages() - Method in class loci.formats.in.BaseZeissReader

countImages() - Method in class loci.formats.in.ZeissTIFFReader

countImages() - Method in class loci.formats.in.ZeissZVIReader

countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Total count of all children and their children's children.

countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShape

Count of all children and their childrens children.

countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Count of all children and their childrens children.

CountryRecord - Class in loci.poi.hssf.record

Title: Country Record (aka WIN.INI country)

CountryRecord() - Constructor for class loci.poi.hssf.record.CountryRecord

CountryRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CountryRecord

Constructs a CountryRecord and sets its fields appropriately

countStrings() - Method in class loci.poi.hssf.record.SSTRecord

CP_037 - Static variable in class loci.poi.hpsf.Constants

Codepage 037, a special case

CP_EUC_JP - Static variable in class loci.poi.hpsf.Constants

Codepage for EUC-JP

CP_EUC_KR - Static variable in class loci.poi.hpsf.Constants

Codepage for EUC-KR

CP_GB18030 - Static variable in class loci.poi.hpsf.Constants

Codepage for GB18030

CP_GB2312 - Static variable in class loci.poi.hpsf.Constants

Codepage for GB2312

CP_GBK - Static variable in class loci.poi.hpsf.Constants

Codepage for GBK, aka MS936

CP_ISO_2022_JP1 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-2022-JP

CP_ISO_2022_JP2 - Static variable in class loci.poi.hpsf.Constants

Another codepage for ISO-2022-JP

CP_ISO_2022_JP3 - Static variable in class loci.poi.hpsf.Constants

Yet another codepage for ISO-2022-JP

CP_ISO_2022_KR - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-2022-KR

CP_ISO_8859_1 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-1

CP_ISO_8859_2 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-2

CP_ISO_8859_3 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-3

CP_ISO_8859_4 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-4

CP_ISO_8859_5 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-5

CP_ISO_8859_6 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-6

CP_ISO_8859_7 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-7

CP_ISO_8859_8 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-8

CP_ISO_8859_9 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-9

CP_JOHAB - Static variable in class loci.poi.hpsf.Constants

Codepage for Johab

CP_KOI8_R - Static variable in class loci.poi.hpsf.Constants

Codepage for KOI8-R

CP_MAC_ARABIC - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Arabic (Java: MacArabic)

CP_MAC_CENTRAL_EUROPE - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Central Europe (Latin-2) (Java: MacCentralEurope)

CP_MAC_CHINESE_SIMPLE - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Chinese Simplified (Java: unknown - use EUC_CN, ISO2022_CN_GB, MS936 or cp935)

CP_MAC_CHINESE_TRADITIONAL - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Chinese Traditional (Java: unknown - use Big5, MS950, or cp937)

CP_MAC_CROATIAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Croatian (Java: MacCroatian)

CP_MAC_CYRILLIC - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Cyrillic (Java: MacCyrillic)

CP_MAC_GREEK - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Greek (Java: MacGreek)

CP_MAC_HEBREW - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Hebrew (Java: MacHebrew)

CP_MAC_ICELAND - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Iceland (Java: MacIceland)

CP_MAC_JAPAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Japan (Java: unknown - use SJIS, cp942 or cp943)

CP_MAC_KOREAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Korean (Java: unknown - use EUC_KR or cp949)

CP_MAC_ROMAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Roman (Java: MacRoman)

CP_MAC_ROMANIA - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Romanian (Java: MacRomania)

CP_MAC_THAI - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Thai (Java: MacThai)

CP_MAC_TURKISH - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Turkish (Java: MacTurkish)

CP_MAC_UKRAINE - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Ukrainian (Java: MacUkraine)

CP_MS949 - Static variable in class loci.poi.hpsf.Constants

Codepage for MS949

CP_SJIS - Static variable in class loci.poi.hpsf.Constants

Codepage for SJIS

CP_UNICODE - Static variable in class loci.poi.hpsf.Constants

Codepage for Unicode

CP_US_ACSII - Static variable in class loci.poi.hpsf.Constants

Codepage for US-ASCII

CP_US_ASCII2 - Static variable in class loci.poi.hpsf.Constants

Another codepage for US-ASCII

CP_UTF16 - Static variable in class loci.poi.hpsf.Constants

Codepage for UTF-16

CP_UTF16_BE - Static variable in class loci.poi.hpsf.Constants

Codepage for UTF-16 big-endian

CP_UTF8 - Static variable in class loci.poi.hpsf.Constants

Codepage for UTF-8

CP_WINDOWS_1250 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1250

CP_WINDOWS_1251 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1251

CP_WINDOWS_1252 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1252

CP_WINDOWS_1253 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1253

CP_WINDOWS_1254 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1254

CP_WINDOWS_1255 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1255

CP_WINDOWS_1256 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1256

CP_WINDOWS_1257 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1257

CP_WINDOWS_1258 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1258

CPA - Static variable in class ome.units.UNITS

cqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

cQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The component in which the ncb quit condition was reached

CR - Static variable in class loci.poi.hssf.model.FormulaParser

crc - Variable in class loci.common.CBZip2InputStream

CRC - Class in loci.common

A simple class to hold and calculate the CRC for sanity checking the data.

CRC() - Constructor for class loci.common.CRC

crc(byte[]) - Method in class loci.formats.out.APNGWriter

crc(byte[], int, int) - Method in class loci.formats.out.APNGWriter

CRC_32_TABLE - Static variable in class loci.common.CRC

create(InputStream) - Static method in class loci.poi.hpsf.PropertySetFactory

Creates the most specific PropertySet from an InputStream.

create() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

create(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

create() - Method in class loci.poi.hssf.usermodel.EscherGraphics

create() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

create(String, Properties) - Static method in class loci.poi.hssf.usermodel.FontDetails

Create an instance of FontDetails by loading them from the provided property object.

create(T, UnitsElectricPotential) - Static method in enum ome.xml.model.enums.UnitsElectricPotential

create(T, UnitsElectricPotential) - Static method in enum ome.xml.model.enums.UnitsElectricPotential

create(T, UnitsFrequency) - Static method in enum ome.xml.model.enums.UnitsFrequency

create(T, UnitsFrequency) - Static method in enum ome.xml.model.enums.UnitsFrequency

create(T, UnitsLength) - Static method in enum ome.xml.model.enums.UnitsLength

create(T, UnitsLength) - Static method in enum ome.xml.model.enums.UnitsLength

create(T, UnitsPower) - Static method in enum ome.xml.model.enums.UnitsPower

create(T, UnitsPower) - Static method in enum ome.xml.model.enums.UnitsPower

create(T, UnitsPressure) - Static method in enum ome.xml.model.enums.UnitsPressure

create(T, UnitsPressure) - Static method in enum ome.xml.model.enums.UnitsPressure

create(T, UnitsTemperature) - Static method in enum ome.xml.model.enums.UnitsTemperature

create(T, UnitsTemperature) - Static method in enum ome.xml.model.enums.UnitsTemperature

create(T, UnitsTime) - Static method in enum ome.xml.model.enums.UnitsTime

create(T, UnitsTime) - Static method in enum ome.xml.model.enums.UnitsTime

createAggregate(List, int, DrawingManager2) - Static method in class loci.poi.hssf.record.EscherAggregate

Collapses the drawing records into an aggregate.

createAnchor(HSSFAnchor) - Method in class loci.poi.hssf.model.AbstractShape

Creates an escher anchor record from a HSSFAnchor.

createAnchor(HSSFAnchor) - Static method in class loci.poi.hssf.model.ConvertAnchor

createAngle(Double, Unit<Angle>) - Static method in class loci.formats.FormatTools

createAngle(Integer, Unit<Angle>) - Static method in class loci.formats.FormatTools

createAngle(T, Unit<Angle>) - Static method in class loci.formats.FormatTools

createAnnotatedImage() - Method in class ome.specification.XMLMockObjects

Creates and annotates an image.

createAnnotation(String, OMEModelObject, int) - Method in class ome.specification.XMLMockObjects

Create a comment annotation for the specified object.

createArrayForType(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Creates an array appropriate for the indicated data type.

createBackup() - Method in class loci.poi.hssf.model.Workbook

creates the Backup record with backup set to 0.

createBaseReader() - Method in class loci.plugins.in.ImportProcess

Initializes an IFormatReader according to the current configuration.

CreateBaseUnit(String, String) - Static method in class ome.units.unit.Unit

createBasicPlate(int) - Method in class ome.specification.XMLMockObjects

Creates a basic plate.

createBasicPlateWithReagent() - Method in class ome.specification.XMLMockObjects

Creates a plate with 1 row, 1 column and 1 field.

createBATBlocks(int[], int) - Static method in class loci.poi.poifs.storage.BATBlock

Create an array of BATBlocks from an array of int block allocation table entries

createBinaryFile() - Method in class ome.specification.XMLMockObjects

Creates a binary file.

createBinData(int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a new object.

createBitsPerComponentBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createBlank(int, short) - Method in class loci.poi.hssf.model.Sheet

create a BLANK record (does not add it to the records contained in this sheet)

createBlocks(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Create the BATBlocks we need

createBOF() - Method in class loci.poi.hssf.model.Sheet

creates the BOF record

createBOF() - Method in class loci.poi.hssf.model.Workbook

creates the BOF record

createBookBool() - Method in class loci.poi.hssf.model.Workbook

creates the BookBool record with saveLinkValues set to 0.

createBoundSheet(int) - Method in class loci.poi.hssf.model.Workbook

create a "bound sheet" or "bundlesheet" (depending who you ask) record Always sets the sheet's bof to 0.

createBox(int, Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates a Box object with the provided type based on the provided Node object based on reflection.

createBuilder() - Static method in class loci.common.xml.XMLTools

Creates a new DocumentBuilder via DocumentBuilderFactory or logs and throws a RuntimeException.

createBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

createBuiltInName(byte, int) - Method in class loci.poi.hssf.model.Workbook

Generates a NameRecord to represent a built-in region

createCalcCount() - Method in class loci.poi.hssf.model.Sheet

creates the CalcCount record and sets it to 0x64 (default number of iterations)

createCalcMode() - Method in class loci.poi.hssf.model.Sheet

creates the CalcMode record and sets it to 1 (automatic formula caculation)

createCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

Use this to create new cells within the row and return it.

createCell(short, int) - Method in class loci.poi.hssf.usermodel.HSSFRow

Use this to create new cells within the row and return it.

createCellFromRecord(CellValueRecordInterface) - Method in class loci.poi.hssf.usermodel.HSSFRow

create a high level HSSFCell object from an existing low level record.

createCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create a new Cell style and add it to the workbook's style table

createCellXF() - Method in class loci.poi.hssf.model.Workbook

creates a new Cell-type Extneded Format Record and adds it to the end of ExtendedFormatRecords collection

createChannel(int) - Method in class ome.specification.XMLMockObjects

Creates a channel.

createChannelDefinitionFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createChannelPriorities() - Static method in class loci.formats.in.LIFReader

createCodec(boolean) - Method in class loci.formats.in.NativeND2Reader

createCodepage() - Method in class loci.poi.hssf.model.Workbook

creates the Codepage record containing the constant stored in CODEPAGE

createColInfo() - Method in class loci.poi.hssf.model.Sheet

creates the ColumnInfo Record and sets it to a default column/width

createColInfo() - Static method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

creates the ColumnInfo Record and sets it to a default column/width

createColorModel(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Creates a ColorModel that may be used with the specified SampleModel.

createColorModel(ColorSpace, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

createColorModel() - Method in class loci.plugins.util.ImageProcessorReader

createColorSpecificationBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createColorTable(ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Create a color table from the image ColorModel and SampleModel.

createComment(HSSFAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Constructs a cell comment.

createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.Index16ColorModel

createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.SignedColorModel

createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel

createComponentCM(ColorSpace, int, int, boolean, boolean) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Create a ComponentColorModel for use in creating an ImageTypeSpecifier.

createContinue2() - Method in class loci.poi.hssf.record.TextObjectRecord

createCountry() - Method in class loci.poi.hssf.model.Workbook

Creates the Country record with the default country set to 1 and current country set to 7 in case of russian locale ("ru_RU") and 1 otherwise

created - Variable in class loci.formats.out.QTWriter

Time the file was created.

createData() - Method in class loci.tests.IOTester

createDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the instance of HSSFDataFormat for this workbook.

createDataset(int) - Method in class ome.specification.XMLMockObjects

Creates a dataset.

createDateWindow1904() - Method in class loci.poi.hssf.model.Workbook

creates the DateWindow1904 record with windowing set to 0.

createDecoder(short[], int, int) - Method in class loci.formats.codec.HuffmanCodec.Decoder

createDecoder(HuffmanCodec.Decoder, short[], int, int) - Method in class loci.formats.codec.HuffmanCodec.Decoder

createDefaultColWidth() - Method in class loci.poi.hssf.model.Sheet

creates the DefaultColWidth Record and sets it to 8

createDefaultPalette() - Method in class loci.poi.hssf.record.PaletteRecord

Creates the default palette as PaletteRecord binary data

createDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet

creates the DefaultRowHeight Record and sets its options to 0 and rowheight to 0xff

createDelta() - Method in class loci.poi.hssf.model.Sheet

creates the Delta record and sets it to 0.0010 (default accuracy)

createDequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the dequantizer parameters.

createDetector(int) - Method in class ome.specification.XMLMockObjects

Creates a detector.

createDetectorSettings(int) - Method in class ome.specification.XMLMockObjects

Creates a detector settings.

createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager

createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager2

createDichroic(int) - Method in class ome.specification.XMLMockObjects

Creates a dichroic.

createDimensions() - Method in class loci.poi.hssf.model.Sheet

creates the Dimensions Record and sets it to bogus values (you should set this yourself or let the high level API do it for you)

createDirectory(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

create a new DirectoryEntry

createDirectory(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DirectoryEntry

createDirectory(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

create a new DirectoryEntry in the root directory

createDocument() - Static method in class loci.common.xml.XMLTools

Calls DocumentBuilder.newDocument() on a new builder.

createDocument(String, RandomAccessInputStream) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

create a new DocumentEntry

createDocument(String, int, POIFSWriterListener) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

create a new DocumentEntry; the data will be provided later

createDocument(POIFSDocument) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DocumentEntry

createDocument(String, RandomAccessInputStream) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DocumentEntry

createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DocumentEntry; the data will be provided later

createDocument(RandomAccessInputStream, String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Create a new document to be added to the root directory

createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

create a new DocumentEntry in the root entry; the data will be provided later

createDocumentInputStream(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

open a document in the root entry's list of entries

createDrawingGroup() - Method in class loci.poi.hssf.model.Workbook

Creates a drawing group record.

createDrawingPatriarch() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates the toplevel drawing patriarch.

createDSF() - Method in class loci.poi.hssf.model.Workbook

creates the DSF record containing a 0 since HSSF can't even create Dual Stream Files

createElectricPotential(Double, Unit<ElectricPotential>) - Static method in class loci.formats.FormatTools

createElectricPotential(Integer, Unit<ElectricPotential>) - Static method in class loci.formats.FormatTools

createElectricPotential(T, Unit<ElectricPotential>) - Static method in class loci.formats.FormatTools

createEntropyDecoder(CodedCBlkDataSrcDec, J2KImageReadParamJava) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Creates and returns the entropy decoder corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.

createEOF() - Method in class loci.poi.hssf.model.Sheet

creates the EOF record

createEOF() - Method in class loci.poi.hssf.model.Workbook

creates the EOF record

createExperiment(int) - Method in class ome.specification.XMLMockObjects

Creates an experiment.

createExperimenter(int) - Method in class ome.specification.XMLMockObjects

Creates an experimenter.

createExperimentWithMicrobeam(int) - Method in class ome.specification.XMLMockObjects

Creates an experiment with a microbeam.

createExtendedFormat(int) - Method in class loci.poi.hssf.model.Workbook

Creates an ExtendedFormatRecord object

createExtendedFormat() - Method in class loci.poi.hssf.model.Workbook

creates an default cell type ExtendedFormatRecord object.

createExtendedSST() - Method in class loci.poi.hssf.model.Workbook

Creates the ExtendedSST record with numstrings per bucket set to 0x8.

createExternSheet() - Method in class loci.poi.hssf.model.Workbook

creates a new extern sheet record

createExtSSTRecord(int) - Method in class loci.poi.hssf.record.SSTRecord

Creates an extended string record based on the current contents of the current SST record.

createFileInfo() - Method in class loci.plugins.in.ImagePlusReader

createFilter(int, double, double) - Method in class ome.specification.XMLMockObjects

Creates a filter.

createFilterSet(int) - Method in class ome.specification.XMLMockObjects

Creates a filter set.

createFnGroupCount() - Method in class loci.poi.hssf.model.Workbook

creates the FnGroupCount record containing the Magic number constant of 14.

createFont() - Method in class loci.poi.hssf.model.Workbook

creates a Font record with the following magic values:

createFont() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create a new Font and add it to the workbook's font table

createFooter() - Method in class loci.poi.hssf.model.Sheet

creates the Footer Record and sets it to nothing/0 length

createFooterString() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Creates the complete footer string based on the left, center, and middle strings.

createFormat(int) - Method in class loci.poi.hssf.model.Workbook

Creates a FormatRecord object

createFormat(String) - Method in class loci.poi.hssf.model.Workbook

Creates a FormatRecord, inserts it, and returns the index code.

createFormula(int, short, String) - Method in class loci.poi.hssf.model.Sheet

Attempts to parse the formula into PTGs and create a formula record DOES NOT WORK YET

createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.model.Sheet

Creates a split (freezepane).

createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates a split (freezepane).

createFreezePane(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates a split (freezepane).

createFrequency(Double, Unit<Frequency>) - Static method in class loci.formats.FormatTools

createFrequency(Integer, Unit<Frequency>) - Static method in class loci.formats.FormatTools

createFrequency(T, Unit<Frequency>) - Static method in class loci.formats.FormatTools

createFromMetadata(IIOMetadata) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Creates a TIFFDirectory instance from the contents of an image metadata object.

createFromMetadataNode(TIFFTagSet, Node) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Creates a TIFFField from a TIFF native image metadata node.

createFullPopulatedPlate(int) - Method in class ome.specification.XMLMockObjects

Creates a plate with XMLMockObjects.ROWS rows, XMLMockObjects.COLUMNS columns and XMLMockObjects.FIELDS field.

createGridset() - Method in class loci.poi.hssf.model.Sheet

creates the Gridset record and sets it to true (user has mucked with the gridlines)

createGroup(String) - Method in interface loci.formats.services.JHDFService

Writes an array as sub-slice into an existing HDF5 dataset

createGroup(String) - Method in class loci.formats.services.JHDFServiceImpl

createGroup(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a new group record stored under this patriarch.

createGroup(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Create another group under this group.

createGuts() - Method in class loci.poi.hssf.model.Sheet

creates the Guts record and sets leftrow/topcol guttter and rowlevelmax/collevelmax to 0

createHCenter() - Method in class loci.poi.hssf.model.Sheet

creates the HCenter Record and sets it to false (don't horizontally center)

createHeader() - Method in class loci.poi.hssf.model.Sheet

creates the Header Record and sets it to nothing/0 length

createHeaderBoxFromStandardNode(Node, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createHeaderString() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Creates the complete header string based on the left, center, and middle strings.

createHideObj() - Method in class loci.poi.hssf.model.Workbook

creates the HideObj record with hide object set to 0.

createHuffmanDecodingTables(int, int) - Method in class loci.common.CBZip2InputStream

Called by recvDecodingTables() exclusively.

createImage(String, List<ImageProcessor>) - Static method in class loci.plugins.in.ImagePlusReader

Creates an ImagePlus from the given image processors.

createImage(String, ImageStack, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader

Creates an ImagePlus from the given image stack.

createImage() - Method in class loci.plugins.util.RecordedImageProcessor

createImage(int, boolean) - Method in class ome.specification.XMLMockObjects

Creates a new image.

createImage(int) - Method in class ome.specification.XMLMockObjects

Creates a new image.

createImage() - Method in class ome.specification.XMLMockObjects

Creates and returns the root element.

createImage(boolean) - Method in class ome.specification.XMLMockObjects

Creates and returns the root element.

createImageEnvironment() - Method in class ome.specification.XMLMockObjects

Creates a imaging environment.

createImageWithAcquisitionData() - Method in class ome.specification.XMLMockObjects

Creates an image with acquisition data.

createImageWithAnnotatedAcquisitionData() - Method in class ome.specification.XMLMockObjects

Creates an image with acquisition data.

createImageWithExperiment(int, boolean, Experiment) - Method in class ome.specification.XMLMockObjects

Creates an image with a given experiment.

createImageWithROI() - Method in class ome.specification.XMLMockObjects

Creates an image with ROI.

createIndex() - Method in class loci.poi.hssf.model.Sheet

creates the Index record - not currently used

createIndexColorModel(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Creates an palette representing colors from given image img.

createIndexedImage(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Creates an image representing given image src using IndexColorModel.

createIndexMap(int) - Method in class loci.formats.in.FakeReader

Creates a mapping between indices and color values.

createInputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi

createInstance(RandomAccessIO, HeaderDecoder, J2KImageReadParamJava, DecoderSpecs, boolean, HeaderInfo) - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Creates a bit stream reader of the correct type that works on the provided RandomAccessIO, with the special parameters from the parameter list.

createInstance(CBlkQuantDataSrcEnc, J2KImageWriteParamJava, CBlkSizeSpec, PrecinctSizeSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec) - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder

Creates a EntropyCoder object for the appropriate entropy coding parameters in the parameter list 'pl', and having 'src' as the source of quantized data.

createInstance(CodedCBlkDataSrcEnc, float, CodestreamWriter, J2KImageWriteParamJava) - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Creates a PostCompRateAllocator object for the appropriate rate allocation parameters in the parameter list 'pl', having 'src' as the source of entropy coded data, 'rate' as the target bitrate and 'bw' as the bit stream writer object.

createInstance(CBlkWTDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.quantization.quantizer.Quantizer

Creates a Quantizer object for the appropriate type of quantization specified in the options in the parameter list 'pl', and having 'src' as the source of data to be quantized.

createInstance(Quantizer, J2KImageWriteParamJava) - Static method in class jj2000.j2k.roi.encoder.ROIScaler

Creates a ROIScaler object.

createInstance(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Static method in class jj2000.j2k.roi.ROIDeScaler

Creates a ROIDeScaler object.

createInstance(BlkImgDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT

Creates a ForwardWT object with the specified filters, and with other options specified in the parameter list 'pl'.

createInstance(CBlkWTDataSrcDec, DecoderSpecs) - Static method in class jj2000.j2k.wavelet.synthesis.InverseWT

Creates an InverseWT object that works on the data type of the source, with the special additional parameters from the parameter list.

createInstances() - Method in class loci.tests.testng.FormatReaderTestFactory

createInstances() - Method in class loci.tests.testng.FormatWriterTestFactory

createInstrument(boolean) - Method in class ome.specification.XMLMockObjects

Creates an instrument with filters, light sources etc.

createInterfaceEnd() - Method in class loci.poi.hssf.model.Workbook

creates the InterfaceEnd record

createInterfaceHdr() - Method in class loci.poi.hssf.model.Workbook

creates the InterfaceHdr record

createInterleavedSM(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Create a PixelInterleavedSampleModel for use in creating an ImageTypeSpecifier.

createIteration() - Method in class loci.poi.hssf.model.Sheet

creates the Iteration record and sets it to false (don't iteratively calculate formulas)

createKeys() - Static method in class loci.formats.in.ZeissLSMReader

createLabelSST(int, short, int) - Method in class loci.poi.hssf.model.Sheet

Create a LABELSST Record (does not add it to the records contained in this sheet)

createLargePalette(ColorModel) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

createLength(Double, Unit<Length>) - Static method in class loci.formats.FormatTools

createLength(Integer, Unit<Length>) - Static method in class loci.formats.FormatTools

createLength(T, Unit<Length>) - Static method in class loci.formats.FormatTools

createLightPath() - Method in class ome.specification.XMLMockObjects

Creates a light path.

createLightSource(String, int) - Method in class ome.specification.XMLMockObjects

Creates a light source of the specified type.

createLightSourceSettings(int) - Method in class ome.specification.XMLMockObjects

Creates a light source settings.

createLSID(String, int...) - Static method in class loci.formats.MetadataTools

Constructs an LSID, given the object type and indices.

createMask(int[], int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

createMergedCells() - Method in class loci.poi.hssf.model.Sheet

createMetadata(String, CoreMetadata) - Method in class loci.formats.tools.MakeTestOmeTiff

createMetadata(String, int, int, boolean) - Method in class loci.tests.testng.ConversionTest

createMicrobeamManipulation(int) - Method in class ome.specification.XMLMockObjects

Creates a microbeam manipulation.

createMicroscope() - Method in class ome.specification.XMLMockObjects

Creates a microscope.

createMMS() - Method in class loci.poi.hssf.model.Workbook

creates an MMS record

createModulo(OMEXMLMetadata, Modulo, StructuredAnnotations, Image, int, int, int) - Method in class loci.formats.services.OMEXMLServiceImpl

Create a ModuloAlong* annotation corresponding to the given Modulo.

createName() - Method in class loci.poi.hssf.model.Workbook

creates new name

createName() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

creates a new named range and add it to the model

createNewDocument() - Method in class ome.xml.meta.AbstractOMEXMLMetadata

createNewFile() - Method in class loci.common.Location

Creates a new empty file named by this Location's path name iff a file with this name does not already exist.

createNewFont() - Method in class loci.poi.hssf.model.Workbook

creates a new font record and adds it to the "font table".

createNewPtg() - Method in class loci.poi.hssf.record.NameRecord

createNodeIntoTree(IIOMetadataNode, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createNoteRecord(HSSFComment, int) - Method in class loci.poi.hssf.model.CommentShape

Creates the low level NoteRecord which holds the comment attributes.

createNumber(int, short, double) - Method in class loci.poi.hssf.model.Sheet

Create a NUMBER Record (does not add it to the records contained in this sheet)

createObjective(int) - Method in class ome.specification.XMLMockObjects

Creates an objective.

createObjectiveSettings(int) - Method in class ome.specification.XMLMockObjects

Creates an objective settings.

createObjectProtect() - Method in class loci.poi.hssf.model.Sheet

creates an ObjectProtect record with protect set to false.

createObjRecord(HSSFShape, int) - Method in class loci.poi.hssf.model.LineShape

Creates the low level OBJ record for this shape.

createObjRecord(HSSFShape, int) - Method in class loci.poi.hssf.model.PictureShape

Creates the low level OBJ record for this shape.

createObjRecord(HSSFShape, int) - Method in class loci.poi.hssf.model.PolygonShape

Creates the low level OBJ record for this shape.

createObjRecord(HSSFShape, int) - Method in class loci.poi.hssf.model.SimpleFilledShape

Creates the low level OBJ record for this shape.

createObjRecord(HSSFTextbox, int) - Method in class loci.poi.hssf.model.TextboxShape

Creates the low level OBJ record for this shape.

createOMEXMLMetadata() - Static method in class loci.formats.MetadataTools

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.

createOMEXMLMetadata() - Method in interface loci.formats.services.OMEXMLService

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.

createOMEXMLMetadata(String) - Method in interface loci.formats.services.OMEXMLService

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.

createOMEXMLMetadata(String, String) - Method in interface loci.formats.services.OMEXMLService

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.

createOMEXMLMetadata() - Method in class loci.formats.services.OMEXMLServiceImpl

createOMEXMLMetadata(String) - Method in class loci.formats.services.OMEXMLServiceImpl

createOMEXMLMetadata(String, String) - Method in class loci.formats.services.OMEXMLServiceImpl

createOMEXMLRoot(String) - Method in interface loci.formats.services.OMEXMLService

Constructs an OME root node.

createOMEXMLRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl

createOutputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi

createPalette() - Method in class loci.poi.hssf.model.Workbook

Creates a palette record initialized to the default palette

createPaletteBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createParsedExpressionTokens(short, RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg

createPassword() - Method in class loci.poi.hssf.model.Sheet

creates a Password record with password set to 00.

createPassword() - Method in class loci.poi.hssf.model.Workbook

creates the Password record with password set to 0.

createPasswordRev4() - Method in class loci.poi.hssf.model.Workbook

creates the PasswordRev4 record with password set to 0.

createPicture(HSSFClientAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a picture.

createPicture(HSSFChildAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Creates a picture.

createPlane(String, CoreMetadata, int) - Method in class loci.formats.tools.MakeTestOmeTiff

createPlane(int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a plane information object.

createPlate(int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a default plate

createPlate(int, int, int, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a populated plate with images.

createPlate(int, int, int, int, int, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a populated plate with images.

createPolygon(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a polygon

createPolygon(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Creates a polygon

createPopulatedPlate(int) - Method in class ome.specification.XMLMockObjects

Creates a plate with 1 row, 1 column and 1field.

createPopulatedPlate(int, int) - Method in class ome.specification.XMLMockObjects

Creates a plate with 1 row, 1 column and fieldsfield.

createPopulatedPlate(int, int, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates several plates but no containing screen.

createPopulatedScreen(int, int, int, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates several screens each with several plates.

createPopulatedScreen(int, int, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a screen with several plates.

createPopulatedScreen() - Method in class ome.specification.XMLMockObjects

Creates one 2x2 plate of with a single well sample per well and one plate acquisition.

createPower(Double, Unit<Power>) - Static method in class loci.formats.FormatTools

createPower(Integer, Unit<Power>) - Static method in class loci.formats.FormatTools

createPower(T, Unit<Power>) - Static method in class loci.formats.FormatTools

createPrecision() - Method in class loci.poi.hssf.model.Workbook

creates the Precision record with precision set to true.

createPressure(Double, Unit<Pressure>) - Static method in class loci.formats.FormatTools

createPressure(Integer, Unit<Pressure>) - Static method in class loci.formats.FormatTools

createPressure(T, Unit<Pressure>) - Static method in class loci.formats.FormatTools

createPrintGridlines() - Method in class loci.poi.hssf.model.Sheet

creates the PrintGridlines record and sets it to false (that makes for ugly sheets).

createPrintHeaders() - Method in class loci.poi.hssf.model.Sheet

creates the PrintHeaders record and sets it to false (we don't create headers yet so why print them)

createPrintSetup() - Method in class loci.poi.hssf.model.Sheet

creates the PrintSetup Record and sets it to defaults and marks it invalid

createProcessor(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

createProject(int) - Method in class ome.specification.XMLMockObjects

Creates a project.

createProperties(byte[], int, short) - Method in class loci.poi.ddf.EscherPropertyFactory

Create new properties from a byte array.

createPropertyBlockArray(List, int) - Static method in class loci.poi.poifs.storage.PropertyBlock

Create an array of PropertyBlocks from an array of Property instances, creating empty Property instances to make up any shortfall

createProtect() - Method in class loci.poi.hssf.model.Sheet

creates a Protect record with protect set to false.

createProtect() - Method in class loci.poi.hssf.model.Workbook

creates the Protect record with protect set to false.

createProtectionRev4() - Method in class loci.poi.hssf.model.Workbook

creates the ProtectionRev4 record with protect set to false.

createPtg(RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg

createRawImage() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Creates a BufferedImage whose underlying data array will be suitable for holding the raw decoded output of the decodeRaw method.

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

createReagent(int) - Method in class ome.specification.XMLMockObjects

Creates a reagent.

createRecord(byte[], int) - Method in class loci.poi.ddf.DefaultEscherRecordFactory

Generates an escher record including the any children contained under that record.

createRecord(byte[], int) - Method in interface loci.poi.ddf.EscherRecordFactory

Create a new escher record from the data provided.

createRecord(RecordInputStream) - Static method in class loci.poi.hssf.dev.BiffViewer

Essentially a duplicate of RecordFactory.

createRecord(RecordInputStream) - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory

create a record, if there are MUL records than multiple records are returned digested into the non-mul form.

createRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

createRecords(InputStream, boolean) - Static method in class loci.poi.hssf.dev.BiffViewer

Create an array of records from an input stream

createRecords(InputStream) - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

Create an array of records from an input stream

createRefMode() - Method in class loci.poi.hssf.model.Sheet

creates the RefMode record and sets it to A1 Mode (default reference mode)

createRefreshAll() - Method in class loci.poi.hssf.model.Workbook

creates the RefreshAll record with refreshAll set to true.

createResolutionBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createROI(int, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates an ROI.

createROIDeScaler(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Creates and returns the ROIDeScaler corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.

createRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl

Constructs an OME root node.

createRoot() - Method in class ome.xml.meta.AggregateMetadata

createRoot() - Method in class ome.xml.meta.DummyMetadata

createRoot() - Method in class ome.xml.meta.FilterMetadata

createRoot() - Method in interface ome.xml.meta.MetadataStore

Create root node.

createRoot() - Method in class ome.xml.meta.OMEXMLMetadataImpl

createRow(int) - Method in class loci.poi.hssf.model.Sheet

Create a row record.

createRow(int) - Static method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Create a row record.

createRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Create a new row within the sheet and return the high level representation

createRowFromRecord(RowRecord) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Used internally to create a high level Row object from a low level row object.

createSaveRecalc() - Method in class loci.poi.hssf.model.Sheet

creates the SaveRecalc record and sets it to true (recalculate before saving)

createScenarioProtect() - Method in class loci.poi.hssf.model.Sheet

creates a ScenarioProtect record with protect set to false.

createScreen(int) - Method in class ome.specification.XMLMockObjects

Creates a screen.

createSelection() - Method in class loci.poi.hssf.model.Sheet

Creates the Selection record and sets it to nothing selected

createShape(HSSFShape, int) - Static method in class loci.poi.hssf.model.AbstractShape

Create a new shape object used to create the escher records.

createShape(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Create a new simple shape under this group.

createShape(int, String, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates the specified type of shape.

createSheet(List, int, int) - Static method in class loci.poi.hssf.model.Sheet

read support (offset used as starting point for search) for low level API.

createSheet(List, int) - Static method in class loci.poi.hssf.model.Sheet

read support (offset = 0) Same as createSheet(Record[] recs, int, int) only the record offset is assumed to be 0.

createSheet() - Static method in class loci.poi.hssf.model.Sheet

Creates a sheet with all the usual records minus values and the "index" record (not required).

createSheet() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.

createSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.

createSimpleShape(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a simple shape.

createSmallPalette(ColorModel) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

createSpContainer(HSSFSimpleShape, int) - Method in class loci.poi.hssf.model.LineShape

Creates the lowerlevel escher records for this shape.

createSpContainer(HSSFSimpleShape, int) - Method in class loci.poi.hssf.model.PictureShape

Creates the lowerlevel escher records for this shape.

createSpContainer(HSSFPolygon, int) - Method in class loci.poi.hssf.model.PolygonShape

Generates the shape records for this shape.

createSpContainer(HSSFSimpleShape, int) - Method in class loci.poi.hssf.model.SimpleFilledShape

Generates the shape records for this shape.

createSpContainer(HSSFTextbox, int) - Method in class loci.poi.hssf.model.TextboxShape

Generates the escher shape records for this shape.

createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.model.Sheet

Creates a split pane.

createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates a split pane.

createSST() - Method in class loci.poi.hssf.model.Workbook

Creates the SST record with no strings and the unique/num string set to 0

createStack(List<ImageProcessor>, List<String>, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader

Creates an image stack from the given image processors.

createStageLabel() - Method in class ome.specification.XMLMockObjects

Creates a imaging environment.

createStyle(int) - Method in class loci.poi.hssf.model.Workbook

Creates a StyleRecord object

createSubRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.SubRecord

createSwatch(Color) - Method in class loci.plugins.in.ColorDialog

createTabId() - Method in class loci.poi.hssf.model.Workbook

creates the TabId record containing an array of 0,1,2.

createTemperature(Double, Unit<Temperature>) - Static method in class loci.formats.FormatTools

createTemperature(Integer, Unit<Temperature>) - Static method in class loci.formats.FormatTools

createTemperature(T, Unit<Temperature>) - Static method in class loci.formats.FormatTools

createTempFile(String, String) - Static method in class loci.poi.util.TempFile

Creates a temporary file.

createTextbox(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Constructs a textbox under the patriarch.

createTextbox(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Create a new textbox under this group.

createTextObjectRecord(HSSFTextbox, int) - Method in class loci.poi.hssf.model.TextboxShape

Textboxes also have an extra TXO record associated with them that most other shapes dont have.

createTileParts() - Method in class jj2000.j2k.util.CodestreamManipulator

This method creates the tileparts from the buffered tile headers, packet headers and packet data

createTime(Double, Unit<Time>) - Static method in class loci.formats.FormatTools

createTime(Integer, Unit<Time>) - Static method in class loci.formats.FormatTools

createTime(T, Unit<Time>) - Static method in class loci.formats.FormatTools

createTransform() - Method in class ome.specification.XMLMockObjects

createTransformFactory() - Static method in class loci.common.xml.XMLTools

createTree() - Method in class loci.poi.hssf.model.FormulaParser

Create a tree representation of the RPN token array used to run the class(RVA) change algo

createUseSelFS() - Method in class loci.poi.hssf.model.Workbook

Creates the UseSelFS object with the use natural language flag set to 0 (false)

createVCenter() - Method in class loci.poi.hssf.model.Sheet

creates the VCenter Record and sets it to false (don't horizontally center)

createVirtualStack(ImportProcess, int, List<LUT>) - Method in class loci.plugins.in.ImagePlusReader

createWindowOne() - Method in class loci.poi.hssf.model.Workbook

creates the WindowOne record with the following magic values:

createWindowProtect() - Method in class loci.poi.hssf.model.Workbook

creates the WindowProtect record with protect set to false.

createWindowTwo() - Method in class loci.poi.hssf.model.Sheet

creates the WindowTwo Record and sets it to:

createWorkbook(List) - Static method in class loci.poi.hssf.model.Workbook

read support for low level API.

createWorkbook() - Static method in class loci.poi.hssf.model.Workbook

Creates an empty workbook object with three blank sheets and all the empty fields.

createWriteAccess() - Method in class loci.poi.hssf.model.Workbook

creates the WriteAccess record containing the logged in user's name

createWriter(String, CoreMetadata, String) - Method in class loci.formats.tools.MakeTestOmeTiff

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

createWSBool() - Method in class loci.poi.hssf.model.Sheet

creates the WSBoolRecord and sets its values to defaults

createXBATBlocks(int[], int, int) - Static method in class loci.poi.poifs.storage.BATBlock

Create an array of XBATBlocks from an array of int block allocation table entries

createXMLBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createXMLDocument(OME, boolean) - Method in class ome.specification.XMLWriter

Creates the String version of the XML file creating using the specified root node.

CREATION_TIME - Static variable in class loci.formats.in.CellSensReader

creationDate - Variable in class loci.formats.in.FV1000Reader

creationDate - Variable in class loci.formats.in.ImaconReader

creationDate - Variable in class loci.formats.in.InCellReader

creationDate - Variable in class loci.formats.in.IvisionReader

creationDate - Variable in class loci.formats.in.LeicaSCNReader.Image

creationDate - Variable in class loci.formats.in.PCIReader

creator - Variable in class ome.xml.model.OME

CREATOR_TAG - Static variable in class loci.formats.in.ImaconReader

crg - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the CRG marker segment found in main header

CRG - Static variable in interface jj2000.j2k.codestream.Markers

Component registration (CRG): 0xFF63

CRG_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for CRG marker segment found

crgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN

crop() - Method in class loci.plugins.util.RecordedImageProcessor

cropBox - Variable in class loci.plugins.in.MainDialog

CropDialog - Class in loci.plugins.in

Bio-Formats Importer crop options dialog box.

CropDialog(ImportProcess) - Constructor for class loci.plugins.in.CropDialog

Creates a crop options dialog for the Bio-Formats Importer.

cropRegion - Variable in class loci.plugins.in.ImporterOptions

crossCategoryAxisAtMaximum - Variable in class loci.poi.hssf.record.ValueRangeRecord

crossChan - Variable in class loci.formats.in.SDTInfo

Cross FCS routing channel number when chan = crossChan and mod == crossMod - Auto FCS otherwise - Cross FCS.

crossesFarRight - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

CrosshairStrategy - Class in loci.formats.cache

A crosshair strategy caches planes extending from the the current dimensional position along each individual axis, but not combinations of axes.

CrosshairStrategy(int[]) - Constructor for class loci.formats.cache.CrosshairStrategy

Constructs a crosshair strategy.

crossMod - Variable in class loci.formats.in.SDTInfo

Cross FCS module number.

crossMtResol - Variable in class loci.formats.in.SDTInfo

Macro time clock of cross FCS module in 0.1 ns units.

cs - Variable in class jj2000.j2k.entropy.Progression

Component index for the start of a progression

CS - Static variable in class loci.formats.in.DicomReader

CS - Static variable in class ome.units.UNITS

CS_2C - Static variable in class loci.formats.gui.TwoChannelColorSpace

CSB_APPROX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_ENUM_GREY - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_ENUM_SRGB - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_ENUM_YCC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Length of Colour Specification Box

CSB_METH - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

Colour Specification Box Fields

CSB_PREC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

cScroll - Variable in class loci.plugins.util.DataBrowser

csiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

cSlider - Variable in class loci.formats.gui.ImageViewer

cSliders - Variable in class loci.plugins.util.DataBrowser

cspoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

csRGB - Variable in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

csRGB - Variable in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

css - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Causal stripes specifications

cStep - Variable in class loci.plugins.in.ImporterOptions

CSV_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

cT - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The bit code counter

cT - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The bit code counter

ctp - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

The cumulative number of truncation points

cts - Variable in class jj2000.j2k.decoder.DecoderSpecs

The component transformation specifications

cts - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

The component transformations specifications

cts - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

The component transformations specifications

cts - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer

The inverse component transformation specifications

ctX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The current tile horizontal index

ctxtbufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Buffer for the contexts to use when sending buffered symbols to the MQ-coder, for each thread.

ctY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The current tile vertical index

cType - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

culx - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The horizontal coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.

culy - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The vertical coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.

cur_pg - Variable in class mdbtools.libmdb.MdbHandle

cur_pg_num - Variable in class mdbtools.libmdb.MdbTableDef

cur_phys_pg - Variable in class mdbtools.libmdb.MdbTableDef

cur_pos - Variable in class mdbtools.libmdb.MdbHandle

cur_row - Variable in class mdbtools.libmdb.MdbTableDef

cur_value_len - Variable in class mdbtools.libmdb.MdbColumn

cur_value_start - Variable in class mdbtools.libmdb.MdbColumn

curbyte - Variable in class jj2000.j2k.codestream.writer.BitOutputBuffer

The position of the current byte to write

curCycle - Variable in class loci.formats.in.SDTInfo

Current cycle (accumulation cycle in FLOW mode) - (if multi-cycle measurement).

curPage - Variable in class loci.formats.in.SDTInfo

Current measured page.

currChangingElems - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

current - Variable in class loci.formats.ImageReader

Current form index.

current - Variable in class loci.formats.ImageWriter

Current form index.

current_layer - Variable in class loci.formats.in.ZeissTIFFHandler

current_scaling - Variable in class loci.formats.in.ZeissTIFFHandler

current_shape - Variable in class loci.formats.in.ZeissTIFFHandler

current_tag - Variable in class loci.formats.in.ZeissTIFFHandler

current_tagset - Variable in class loci.formats.in.ZeissTIFFHandler

currentBit - Variable in class loci.common.RandomAccessInputStream

currentBit - Variable in class loci.common.RandomAccessOutputStream

currentBit - Variable in class loci.formats.codec.BitBuffer

Deprecated.

currentBlock - Variable in class loci.formats.in.APNGReader.PNGInputStream

currentByte - Variable in class loci.common.RandomAccessOutputStream

currentByte - Variable in class loci.formats.codec.BitBuffer

Deprecated.

currentChar - Variable in class loci.common.CBZip2InputStream

currentCol - Variable in class loci.formats.in.InCellReader.InCellHandler

currentElement - Variable in class loci.formats.in.AFIReader.AFIHandler

currentElement - Variable in class loci.formats.in.IvisionReader.IvisionHandler

currentField - Variable in class loci.formats.in.InCellReader.InCellHandler

currentFile - Variable in class loci.formats.services.JHDFServiceImpl

currentFile - Variable in class loci.formats.services.NetCDFServiceImpl

currentFragment - Variable in class loci.formats.out.OMEXMLWriter

currentIcsId - Variable in class loci.formats.in.ICSReader

Current filename.

currentId - Variable in class loci.formats.FormatHandler

Name of current file.

currentId - Variable in class loci.formats.ImageReader

Name of current file.

currentId - Variable in class loci.formats.ImageWriter

Name of current file.

currentIdsId - Variable in class loci.formats.in.ICSReader

currentImage - Variable in class loci.formats.in.InCellReader.InCellHandler

currentImage - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

currentImageFile - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

currentInflatedFrame - Variable in class loci.formats.in.OBFReader

currentLength - Variable in class loci.poi.hssf.record.RecordInputStream

currentmodel - Variable in class loci.poi.hssf.eventmodel.ModelFactory

currentName - Variable in class loci.formats.in.OperettaReader.OperettaHandler

currentNo - Variable in class loci.formats.in.AmiraReader.HxRLE

currentNo - Variable in class loci.formats.in.AmiraReader.HxZip

currentPlane - Variable in class loci.formats.in.InCellReader.InCellHandler

currentPos - Variable in class loci.formats.cache.Cache

Current dimensional position.

currentProcessor - Variable in class loci.plugins.util.BFVirtualStack

currentQName - Variable in class loci.common.xml.MetadataHandler

currentQName - Variable in class loci.formats.in.InCellReader.InCellHandler

currentQName - Variable in class loci.formats.in.OMEXMLReader.OMEXMLHandler

currentRow - Variable in class loci.formats.in.InCellReader.InCellHandler

currentRow - Variable in class mdbtools.dbengine.MemoryData

currentRow - Variable in class mdbtools.dbengine.Tests.SimpleData

currentSid - Variable in class loci.poi.hssf.record.RecordInputStream

currentSlice - Variable in class loci.plugins.util.BFVirtualStack

currentState - Variable in class loci.common.CBZip2InputStream

currentSubband - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The subband being dealt with in each component

currentTable - Variable in class loci.tests.testng.Configuration

currentThumbnail - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

currentTile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

currentTile - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

currentTileGrid - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

currentTileGrid - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

currentValue - Variable in class loci.formats.in.OperettaReader.OperettaHandler

currentValue - Variable in class loci.formats.in.ScanrReader.ScanrHandler

currIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

currLevel - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

currSize - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

curStep - Variable in class loci.formats.in.SDTInfo

Current step (if multi-step measurement).

curTilePart - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The current tile part being used

curve - Variable in class loci.formats.codec.NikonCodecOptions

CURVE - Static variable in class loci.formats.in.NikonReader

curve - Variable in class loci.formats.in.NikonReader

CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty

CUSTOM - Static variable in interface jj2000.j2k.wavelet.FilterTypes

User-defined filter: -1

CUSTOM_BITS - Static variable in class loci.formats.in.SimplePCITiffReader

CUSTOM_GRAYSCALE - Static variable in class loci.formats.in.CellSensReader

CUSTOM_RENDERED - Static variable in class loci.formats.tiff.IFD

CUSTOM_RENDERED_CUSTOM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "CustomRendered" tag.

CUSTOM_RENDERED_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "CustomRendered" tag.

customColors - Variable in class loci.plugins.in.ImporterOptions

CustomField - Interface in loci.poi.hssf.record

customFilter(ShortBuffer, Rectangle, Rectangle, int, int, TJTransform) - Method in interface org.libjpegturbo.turbojpeg.TJCustomFilter

A callback function that can be used to modify the DCT coefficients after they are losslessly transformed but before they are transcoded to a new JPEG file.

customNumberFormat - Variable in class loci.poi.hssf.record.LinkedDataRecord

CustomProperties - Class in loci.poi.hpsf

Maintains the instances of CustomProperty that belong to a DocumentSummaryInformation.

CustomProperties() - Constructor for class loci.poi.hpsf.CustomProperties

CustomProperty - Class in loci.poi.hpsf

This class represents custum properties in the document summary information stream.

CustomProperty() - Constructor for class loci.poi.hpsf.CustomProperty

Creates an empty CustomProperty.

CustomProperty(Property) - Constructor for class loci.poi.hpsf.CustomProperty

Creates a CustomProperty without a name by copying the underlying Property' attributes.

CustomProperty(Property, String) - Constructor for class loci.poi.hpsf.CustomProperty

Creates a CustomProperty with a name.

CUT_IN - Static variable in class ome.specification.XMLMockObjects

The default cut-in.

CUT_OUT - Static variable in class ome.specification.XMLMockObjects

The default cut-out.

cutIn - Variable in class loci.formats.in.LeicaHandler.MultiBand

cutIn - Variable in class ome.xml.model.TransmittanceRange

cutInPopulated - Variable in class loci.formats.in.LeicaReader

cutIns - Variable in class loci.formats.in.LIFReader

cutInTolerance - Variable in class ome.xml.model.TransmittanceRange

cutOut - Variable in class loci.formats.in.LeicaHandler.MultiBand

cutOut - Variable in class ome.xml.model.TransmittanceRange

cutOutPopulated - Variable in class loci.formats.in.LeicaReader

cutOuts - Variable in class loci.formats.in.LIFReader

cutOutTolerance - Variable in class ome.xml.model.TransmittanceRange

CV - Static variable in class ome.units.UNITS

CW - Static variable in class ome.units.UNITS

cycle - Variable in class loci.formats.in.PrairieMetadata.Sequence

cycle of this <Sequence>.

cycleMax - Variable in class loci.formats.in.PrairieMetadata

Maximum cycle value.

cycleMin - Variable in class loci.formats.in.PrairieMetadata

Minimum cycle value.

cycles - Variable in class loci.formats.in.SDTInfo

Cycles (accumulation cycles in FLOW mode).

CYTELL_MAGIC_STRING - Static variable in class loci.formats.in.InCellReader

CZI_MAGIC_STRING - Static variable in class loci.formats.in.ZeissCZIReader

D

d(String) - Method in class loci.formats.in.PrairieMetadata

Converts the given string to a Double, or null if incompatible.

d - Variable in class mdbtools.libmdb.MdbAny

D - Static variable in class ome.units.UNITS

DA - Static variable in class loci.formats.in.DicomReader

DAC - Static variable in class loci.formats.codec.LosslessJPEGCodec

DAHZ - Static variable in class ome.units.UNITS

DAILY - Static variable in class loci.plugins.Updater

DAILY_BUILD - Static variable in class loci.formats.UpgradeChecker

Location of the JAR artifacts for Bio-Formats' daily build.

DAM - Static variable in class ome.units.UNITS

DAPA - Static variable in class ome.units.UNITS

DAS - Static variable in class ome.units.UNITS

DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

data - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField

The field data.

data - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

data - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

data - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

data - Variable in class jj2000.j2k.entropy.CodedCBlk

The compressed data

data - Variable in class jj2000.j2k.image.DataBlkFloat

The array where the data is stored

data - Variable in class jj2000.j2k.image.DataBlkInt

The array where the data is stored

data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

The array where the data is stored

data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

The array where the data is stored

data - Variable in class loci.common.CBZip2InputStream

All memory intensive stuff.

data - Variable in class loci.formats.codec.ByteVector

data - Variable in class loci.formats.in.ICSReader

Image data.

data - Variable in class loci.formats.in.IM3Reader

data - Variable in class loci.formats.in.TextReader

Because we have no way of indexing into the text file efficiently in general, we cheat and store the entire file's data in a giant array.

data(String, byte) - Static method in class loci.poi.ddf.EscherProperties

data(String) - Static method in class loci.poi.ddf.EscherProperties

data - Variable in class loci.poi.hssf.record.RecordInputStream

Data - Interface in mdbtools.dbengine

Data represents a set of rows containing data

data - Variable in class mdbtools.dbengine.Tests.SimpleData

data - Variable in class mdbtools.dbengine.Tests.SimpleDataSourceTable

data - Variable in class mdbtools.dbengine.Tests.Test

data - Variable in class mdbtools.examples.MemoryRandomAccess

Data - Class in mdbtools.libmdb

Data() - Constructor for class mdbtools.libmdb.Data

data - Variable in class ome.metakit.MetakitReader

DATA_CHANNEL_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader

DATA_CHANNEL_NAME - Static variable in class loci.formats.in.ZeissLSMReader

DATA_DIR - Static variable in class loci.formats.in.VolocityReader

DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For normal .sdt files (setup + data).

DATA_LABEL_PLACEMENT_ABOVE - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_AUTO - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_AXIS - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_BELOW - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_CHART_DEPENDENT - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_INSIDE - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_OUTSIDE - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_RIGHT - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_USER_MOVED - Static variable in class loci.poi.hssf.record.TextRecord

DATA_SIGNATURE - Static variable in class loci.formats.out.AVIWriter

dataAsString - Static variable in class mdbtools.tests.ColumnTest

DataBlk - Class in jj2000.j2k.image

This is a generic abstract class to store data from a block of an image.

DataBlk() - Constructor for class jj2000.j2k.image.DataBlk

DataBlkFloat - Class in jj2000.j2k.image

This is an implementation of the DataBlk interface for 32 bit floating point data (float).

DataBlkFloat() - Constructor for class jj2000.j2k.image.DataBlkFloat

Creates a DataBlkFloat with 0 dimensions and no data array (i.e.

DataBlkFloat(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkFloat

Creates a DataBlkFloat with the specified dimensions and position.

DataBlkFloat(DataBlkFloat) - Constructor for class jj2000.j2k.image.DataBlkFloat

Copy constructor.

DataBlkInt - Class in jj2000.j2k.image

This is an implementation of the DataBlk interface for signed 32 bit integral data.

DataBlkInt() - Constructor for class jj2000.j2k.image.DataBlkInt

Creates a DataBlkInt with 0 dimensions and no data array (i.e.

DataBlkInt(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkInt

Creates a DataBlkInt with the specified dimensions and position.

DataBlkInt(DataBlkInt) - Constructor for class jj2000.j2k.image.DataBlkInt

Copy constructor.

dataBlockLength - Variable in class loci.formats.in.SDTInfo

dataBlockOffs - Variable in class loci.formats.in.SDTInfo

Offset of the first data block.

dataBlocks - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

DataBrowser - Class in loci.plugins.util

Extension of StackWindow with additional UI trimmings for animation, virtual stack caching options, metadata, and general beautification.

DataBrowser(ImagePlus) - Constructor for class loci.plugins.util.DataBrowser

DataBrowser(ImagePlus, ImageCanvas, String[], int[]) - Constructor for class loci.plugins.util.DataBrowser

DataBrowser(ImagePlus, ImageCanvas, String[], int[], XMLWindow) - Constructor for class loci.plugins.util.DataBrowser

DataConverter - Class in loci.formats.gui

A utility for reorganizing and converting QuickTime movies, TIFF series and other 4D datasets.

DataConverter() - Constructor for class loci.formats.gui.DataConverter

DataConverter.RowPanel - Class in loci.formats.gui

DataConverter.RowPanel() - Constructor for class loci.formats.gui.DataConverter.RowPanel

DataEntryURLBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Data Entry URL Box of JPEG JP2 file format.

DataEntryURLBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from its content data.

DataEntryURLBox(byte, byte[], String) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from its data elements.

DataEntryURLBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from a Node.

dataFile - Variable in class loci.formats.in.NRRDReader

Name of data file, if the current extension is 'nhdr'.

dataFile - Variable in class loci.tests.testng.Configuration

DataFormatRecord - Class in loci.poi.hssf.record

The data format record is used to index into a series.

DataFormatRecord() - Constructor for class loci.poi.hssf.record.DataFormatRecord

DataFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DataFormatRecord

Constructs a DataFormat record and sets its fields appropriately.

dataLabelPlacement - Variable in class loci.poi.hssf.record.TextRecord

dataOffs - Variable in class loci.formats.in.SDTInfo

Offset of the data block from the beginning of the file.

dataOffset - Variable in class loci.formats.in.LiFlimReader

Offset to start of pixel data.

dataOffset - Variable in class loci.formats.in.ZeissCZIReader.Attachment

dataOffset - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

dataPointers - Variable in class loci.formats.in.InveonReader

Dataset - Class in ome.xml.model

Dataset() - Constructor for class ome.xml.model.Dataset

Default constructor.

Dataset(Element, OMEModel) - Constructor for class ome.xml.model.Dataset

Constructs Dataset recursively from an XML DOM tree.

Dataset(Dataset) - Constructor for class ome.xml.model.Dataset

Copy constructor.

datasetDescription - Variable in class loci.formats.FormatReader

Short description of the structure of the dataset.

datasetLinks - Variable in class ome.xml.model.Annotation

datasetLinks - Variable in class ome.xml.model.Image

datasetLinks - Variable in class ome.xml.model.Project

DatasetRef - Class in ome.xml.model

DatasetRef() - Constructor for class ome.xml.model.DatasetRef

Default constructor.

DatasetRef(Element, OMEModel) - Constructor for class ome.xml.model.DatasetRef

Constructs DatasetRef recursively from an XML DOM tree.

DatasetRef(DatasetRef) - Constructor for class ome.xml.model.DatasetRef

Copy constructor.

dataSets - Variable in class loci.formats.in.IM3Reader

datasets - Variable in class ome.xml.model.Experimenter

datasets - Variable in class ome.xml.model.ExperimenterGroup

datasets - Variable in class ome.xml.model.OME

dataSize - Variable in class loci.formats.in.MRWReader

dataSize - Variable in class loci.formats.in.ZeissCZIReader.Attachment

dataSize - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

DataSource - Interface in mdbtools.dbengine

DataSource represents the data store.

dataStore - Variable in class loci.formats.in.PQBinReader

datastreamParser - Variable in class ome.jxr.JXRReader

DatastreamParser - Class in ome.jxr.parser

Parses the initial elements (image header, image plane headers(-s)) of the image codestream.

DatastreamParser(Parser, RandomAccessInputStream) - Constructor for class ome.jxr.parser.DatastreamParser

dataTable - Variable in class loci.poi.hssf.record.LegendRecord

DataTools - Class in loci.common

A utility class with convenience methods for reading, writing and decoding words.

DataTools() - Constructor for class loci.common.DataTools

dataType - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

datatype - Variable in class loci.formats.in.LiFlimReader

datatype - Variable in enum ome.jxr.ifd.PixelType

DATATYPE_INT16 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_INT32 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_INT8 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_KEY - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_REAL32 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_REAL64 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_UINT16 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_UINT32 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_UINT8 - Static variable in class loci.formats.in.LiFlimReader

dataTypes - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

DATE - Static variable in class loci.formats.FormatTools

Date on which this release was built.

DATE - Static variable in class loci.formats.in.CellSensReader

date - Variable in class loci.formats.in.DicomReader

date - Variable in class loci.formats.in.FEITiffReader

date - Variable in class loci.formats.in.FluoviewReader

date - Variable in class loci.formats.in.LEOReader

date - Variable in class loci.formats.in.MetamorphHandler

date - Variable in class loci.formats.in.ND2Handler

date - Variable in class loci.formats.in.PrairieMetadata

The date of the acquisition.

date - Variable in class loci.formats.in.QuesantReader

date - Variable in class loci.formats.in.SDTInfo

Date of creation.

date - Variable in class loci.formats.in.SimplePCITiffReader

date - Variable in class loci.formats.in.SVSReader

date() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current date

date() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current date

DATE - Static variable in class loci.tests.testng.Configuration

DATE_FORMAT - Static variable in class loci.formats.in.BrukerReader

DATE_FORMAT - Static variable in class loci.formats.in.CellWorxReader

DATE_FORMAT - Static variable in class loci.formats.in.DeltavisionReader

DATE_FORMAT - Static variable in class loci.formats.in.FEITiffReader

DATE_FORMAT - Static variable in class loci.formats.in.FluoviewReader

Date format

DATE_FORMAT - Static variable in class loci.formats.in.FujiReader

DATE_FORMAT - Static variable in class loci.formats.in.FV1000Reader

DATE_FORMAT - Static variable in class loci.formats.in.GelReader

DATE_FORMAT - Static variable in class loci.formats.in.HitachiReader

DATE_FORMAT - Static variable in class loci.formats.in.IvisionReader

DATE_FORMAT - Static variable in class loci.formats.in.KodakReader

DATE_FORMAT - Static variable in class loci.formats.in.L2DReader

DATE_FORMAT - Static variable in class loci.formats.in.LeicaReader

Format for dates.

DATE_FORMAT - Static variable in class loci.formats.in.MetamorphTiffReader

DATE_FORMAT - Static variable in class loci.formats.in.MicromanagerReader

DATE_FORMAT - Static variable in class loci.formats.in.MolecularImagingReader

DATE_FORMAT - Static variable in class loci.formats.in.ND2Handler

DATE_FORMAT - Static variable in class loci.formats.in.PDSReader

DATE_FORMAT - Static variable in class loci.formats.in.PerkinElmerReader

DATE_FORMAT - Static variable in class loci.formats.in.PrairieReader

DATE_FORMAT - Static variable in class loci.formats.in.SBIGReader

DATE_FORMAT - Static variable in class loci.formats.in.SimplePCITiffReader

DATE_FORMAT - Static variable in class loci.formats.in.SpiderReader

DATE_FORMAT - Static variable in class loci.formats.in.SVSReader

DATE_FORMAT - Static variable in class loci.formats.in.TCSReader

DATE_FORMATS - Static variable in class loci.formats.in.BaseTiffReader

DATE_FORMATS - Static variable in class loci.formats.in.ICSReader

DATE_FORMATS - Static variable in class loci.formats.in.TillVisionReader

DATE_TIME - Static variable in class loci.formats.tiff.IFD

DATE_TIME_DIGITIZED - Static variable in class loci.formats.tiff.IFD

DATE_TIME_FORMAT - Static variable in class loci.formats.in.GelReader

DATE_TIME_ORIGINAL - Static variable in class loci.formats.tiff.IFD

dates - Variable in class loci.formats.in.TillVisionReader

datestamp - Variable in class loci.formats.in.TCSReader

dateToFileTime(Date) - Static method in class loci.poi.hpsf.Util

Converts a Date into a filetime.

DateTools - Class in loci.common

A utility class with convenience methods for working with dates.

DateTools() - Constructor for class loci.common.DateTools

DateWindow1904Record - Class in loci.poi.hssf.record

Title: Date Window 1904 Flag record

DateWindow1904Record() - Constructor for class loci.poi.hssf.record.DateWindow1904Record

DateWindow1904Record(RecordInputStream) - Constructor for class loci.poi.hssf.record.DateWindow1904Record

Constructs a DateWindow1904 record and sets its fields appropriately.

datFile - Variable in class loci.formats.in.InveonReader

datFile - Variable in class loci.formats.in.UnisokuReader

DatRecord - Class in loci.poi.hssf.record

The dat record is used to store options for the chart.

DatRecord() - Constructor for class loci.poi.hssf.record.DatRecord

DatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DatRecord

Constructs a Dat record and sets its fields appropriately.

DAV - Static variable in class ome.units.UNITS

DAW - Static variable in class ome.units.UNITS

DAY_MILLISECONDS - Static variable in class loci.poi.hssf.usermodel.HSSFDateUtil

daysInPriorYears(int) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Return the number of days in prior years since 1900

dayStart(Calendar) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

db_key - Variable in class mdbtools.libmdb.MdbFile

db_passwd - Variable in class mdbtools.libmdb.MdbFile

DBAR - Static variable in class ome.units.UNITS

DBCELL_CAPACITY - Static variable in class loci.poi.hssf.record.IndexRecord

DBCellRecord - Class in loci.poi.hssf.record

Title: DBCell Record Description: Used by Excel and other MS apps to quickly find rows in the sheets.

DBCellRecord() - Constructor for class loci.poi.hssf.record.DBCellRecord

DBCellRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DBCellRecord

Constructs a DBCellRecord and sets its fields appropriately

dbi - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Data block used only to store coordinates of the buffered blocks

dbi - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Data block used only to store coordinates and progressiveness of the buffered blocks

dBlock - Variable in class loci.formats.in.GIFReader

Current data block.

DC_OFFSET - Static variable in class jj2000.j2k.image.input.ImgReaderPGM

DC offset value used when reading image

dcOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

deadTimeComp - Variable in class loci.formats.in.SDTInfo

DEBUG - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

debug - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor

debug - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

debug - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

debug(String) - Static method in class loci.plugins.BF

DEBUG - Static variable in class loci.poi.hssf.model.Workbook

DEBUG - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

DEBUG - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

DEBUG - Static variable in class loci.poi.util.POILogger

DebugTools - Class in loci.common

A utility class with convenience methods for debugging.

DebugTools() - Constructor for class loci.common.DebugTools

dec1616(int) - Method in class loci.poi.ddf.EscherDump

Straight conversion from OO.

DEC_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "component default" specified decomposition

DEC_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "main default" specified decomposition

DEC_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "tile and component specific" specified decomposition

DEC_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "tile specific default" specified decomposition

DECI(Unit<T>) - Static method in class ome.units.UNITS

DecLyrdCBlk - Class in jj2000.j2k.entropy.decoder

This class stores coded (compressed) code-blocks that are organized in layers.

DecLyrdCBlk() - Constructor for class jj2000.j2k.entropy.decoder.DecLyrdCBlk

decode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the input bit stream (located in the ImageInputStream stream, at offset offset, and continuing for byteCount bytes) into the output BufferedImage image.

decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

decode(byte[], int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

decode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor

decode(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

decode(RandomAccessInputStream) - Method in class loci.formats.codec.HuffmanCodec.Decoder

decode(APNGReader.PNGInputStream) - Method in class loci.formats.in.APNGReader

decode(APNGReader.PNGInputStream, int, int) - Method in class loci.formats.in.APNGReader

decode() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Convert raw data to escher records.

decode12BitCamera(byte[], int) - Method in class loci.formats.in.ZeissCZIReader

decodeBlackCodeWord() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeDate(int) - Static method in class loci.formats.in.MetamorphReader

Converts a Julian date value into a human-readable string.

decodeFlags(int) - Method in class loci.poi.ddf.EscherSpRecord

Converts the shape flags into a more descriptive name.

decodeImageData() - Method in class loci.formats.in.GIFReader

Decodes LZW image data into a pixel array.

decodeNextScanline(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeNumber(int) - Static method in class loci.poi.hssf.util.RKUtil

Do the dirty work of decoding; made a private static method to facilitate testing the algorithm

decoder - Variable in class loci.formats.in.TileJPEGReader

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided byte array b, starting at the offset given by dstOffset.

decodeRaw(short[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided short array s, starting at the offset given by dstOffset.

decodeRaw(int[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided int array i, starting at the offset given by dstOffset.

decodeRaw(float[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided float array f, starting at the offset given by dstOffset.

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

decodeRLE() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeRLE4(int, int, byte[], byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

decodeRLE8(int, int, byte[], byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

DecoderSpecs - Class in jj2000.j2k.decoder

This class holds references to each module specifications used in the decoding chain.

DecoderSpecs(int, int) - Constructor for class jj2000.j2k.decoder.DecoderSpecs

Initialize all members with the given number of tiles and components.

decodeSymbol(int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Arithmetically decodes one symbol from the bit stream with the given context and returns its decoded value.

decodeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

This function performs the arithmetic decoding.

decodeT4() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeT6() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeTile(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

decodeTile(int, int, int) - Method in class loci.formats.in.CellSensReader

decodeTime(int) - Static method in class loci.formats.in.MetamorphReader

Converts a time value in milliseconds into a human-readable string.

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class com.luratech.lwf.lwfDecoder

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int).

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl

decodeToMemoryGray8(byte[], int, int, int) - Method in class com.luratech.lwf.lwfDecoder

decodeToMemoryGray8(byte[], int, int, int) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.decodeToMemoryGray8(byte[], int, int, int).

decodeToMemoryGray8(byte[], int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl

decodeWhiteCodeWord() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodingRate - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Specifies the decoding rate in bits per pixel (bpp) where the number of pixels is related to the image's original size (Note: this number is not affected by resolution).

decomp(Subband, int, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This function decomposes the mask for a node in the subband tree.

decomposedComps - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

Block storing the full band decomposition for each component.

decompositionLevel - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies the number of wavelet decomposition levels to apply to the image.

DECOMPR_MASKS - Static variable in class loci.formats.codec.LZWCodec

Masks for reading bits in decompressor.

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.Base64Codec

decompress(byte[]) - Method in class loci.formats.codec.BaseCodec

decompress(byte[][]) - Method in class loci.formats.codec.BaseCodec

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.BaseCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.BaseCodec

decompress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec

2D data block decoding default implementation.

decompress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[]) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[][]) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(RandomAccessInputStream, CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses data from the given RandomAccessInputStream.

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

The CodecOptions parameter must be an instance of HuffmanCodecOptions, and should have the following fields set: table bitsPerSample maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEGCodec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

The CodecOptions parameter should have the following fields set: maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZOCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZWCodec

The CodecOptions parameter should have the following fields set: maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MJPBCodec

The CodecOptions parameter must be an instance of MJPBCodecOptions, and should have the following fields set: interlaced width height bitsPerSample littleEndian interleaved

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSRLECodec

The CodecOptions parameter should have the following fields set: width height previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSVideoCodec

The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.NikonCodec

The CodecOptions parameter must be an instance of NikonCodecOptions, and should have the following fields set: lossless vPredictor curve split bitsPerSample maxBytes width height

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PackbitsCodec

The CodecOptions parameter should have the following fields set: maxBytes

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PassthroughCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.QTRLECodec

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec

The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.RPZACodec

The CodecOptions parameter should have the following fields set: width height

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.TargaRLECodec

The CodecOptions parameter should have the following fields set: maxBytes CodecOptions.bitsPerSample

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.ZlibCodec

decompress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Decodes a strip of data.

decompress(byte[], int, int) - Static method in class loci.poi.ddf.EscherBlipWMFRecord

Decompresses a byte array.

decompress(byte[], int, int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and output a decompressed image to the given destination buffer.

decompress(int, int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and return a buffer containing the decompressed image.

decompress(BufferedImage, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and output a decompressed image to the given BufferedImage instance.

decompress(int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and return a BufferedImage instance containing the decompressed image.

decompress(byte[], int, byte[], int, int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

decompress(byte[], int, int[], int, int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

decompressHeader(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

decompressor - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

decompressor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

decompressor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

decompressor - Variable in class loci.formats.in.AmiraReader.HxZip

decompressToYUV(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and output a YUV planar image to the given destination buffer.

decompressToYUV(int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and return a buffer containing a YUV planar image.

decompressToYUV(byte[], int, byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

deconvolutionLogFile - Variable in class loci.formats.in.DeltavisionReader

decSpec - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

decSpec - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The decoder specifications

decSpec - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The decoder specifications

decSpec - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Reference to decoder specifications

decSpec - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The decoder spec

decSpec - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The decoder specifications

DEEP_GREY_10 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_11 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_12 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_13 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_14 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_15 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_16 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_9 - Static variable in class loci.formats.in.OpenlabReader

def - Variable in class jj2000.j2k.ModuleSpec

Default value for each tile-component

DEF_BUF_LEN - Static variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

The default buffer length, 1024 bytes

DEF_THREADS_NUM - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The default value for the property in THREADS_PROP_NAME: 0

default_backend - Variable in class mdbtools.libmdb.MdbFile

default_backend - Variable in class mdbtools.libmdb.MdbHandle

DEFAULT_BACKGROUND_COLOR - Static variable in class loci.formats.in.CellSensReader

DEFAULT_BLOCK_SIZE - Static variable in class loci.common.NIOInputStream

Block size to use when searching through the stream.

DEFAULT_BLOCK_SIZE - Static variable in class loci.common.RandomAccessInputStream

Block size to use when searching through the stream.

DEFAULT_BUCKET_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTRecord

DEFAULT_BYTES_PER_STRIP - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

DEFAULT_CALLER - Static variable in class loci.formats.UpgradeChecker

Value of "bioformats.caller" for Bio-Formats utilities.

DEFAULT_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Default character set.

DEFAULT_COLOR - Static variable in class ome.specification.XMLMockObjects

The default color.

DEFAULT_COLORS - Static variable in class loci.plugins.in.ImporterOptions

Default custom colors for each channel.

DEFAULT_DIMENSION_ORDER - Static variable in class loci.formats.in.FakeReader

DEFAULT_DISPLAY_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

DEFAULT_HEADER - Static variable in class loci.common.IniTable

Default header name when no header is available.

DEFAULT_IMAGE - Static variable in class loci.formats.in.CellSensReader

DEFAULT_LINEARIZATION_TABLE - Static variable in class loci.formats.codec.NikonCodec

DEFAULT_MINIMUM_ELAPSED - Static variable in class loci.formats.Memoizer

Default value for Memoizer.minimumElapsed if none is provided in the constructor.

DEFAULT_PIXEL_TYPE - Static variable in class loci.formats.in.FakeReader

DEFAULT_PROPERTIES_FILE - Static variable in class loci.common.services.ServiceFactory

Default service properties file.

DEFAULT_RANGE - Static variable in class loci.formats.cache.CacheStrategy

Default cache range.

DEFAULT_RGB_CHANNEL_COUNT - Static variable in class loci.formats.in.FakeReader

DEFAULT_SAMPLE_IFD - Static variable in class loci.formats.in.CellSensReader

DEFAULT_SIZE_C - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_T - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_X - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_Y - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_Z - Static variable in class loci.formats.in.FakeReader

DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.DocumentSummaryInformation

The document name a document summary information stream usually has in a POIFS filesystem.

DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.SummaryInformation

The document name a summary information stream usually has in a POIFS filesystem.

DEFAULT_TYPES - Static variable in class loci.tests.testng.ConversionTest

DEFAULT_VALUE - Static variable in class loci.poi.hssf.record.DeltaRecord

DEFAULT_WRITE_BUFFER_SIZE - Static variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream

The size of the write buffer.

defaultBase - Variable in class loci.poi.hssf.record.AxisOptionsRecord

defaultBufferSize - Static variable in class loci.common.NIOFileHandle

Default NIO buffer size to facilitate buffered I/O.

defaultClasses - Static variable in class loci.formats.ImageReader

Default list of reader classes, for use with noargs constructor.

defaultClasses - Static variable in class loci.formats.ImageWriter

Default list of writer classes, for use with noargs constructor.

defaultcolwidth - Variable in class loci.poi.hssf.model.Sheet

DefaultColWidthRecord - Class in loci.poi.hssf.record

Title: Default Column Width Record

DefaultColWidthRecord() - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord

DefaultColWidthRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord

Constructs a DefaultColumnWidth record and sets its fields appropriately.

defaultCross - Variable in class loci.poi.hssf.record.AxisOptionsRecord

DefaultDataLabelTextPropertiesRecord - Class in loci.poi.hssf.record

The default data label text properties record identifies the text characteristics of the preceeding text record.

DefaultDataLabelTextPropertiesRecord() - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

DefaultDataLabelTextPropertiesRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Constructs a DefaultDataLabelTextProperties record and sets its fields appropriately.

defaultDateEnabled - Static variable in class loci.formats.MetadataTools

defaultDateSettings - Variable in class loci.poi.hssf.record.AxisOptionsRecord

DefaultEscherRecordFactory - Class in loci.poi.ddf

Generates escher records when provided the byte array containing those records.

DefaultEscherRecordFactory() - Constructor for class loci.poi.ddf.DefaultEscherRecordFactory

Creates an instance of the escher record factory

defaultExposureTime - Variable in class loci.formats.in.CellSensReader.Pyramid

defaultFactory - Static variable in class loci.common.services.ServiceFactory

Default service factory.

defaultHeader - Variable in class loci.poi.hssf.record.WindowTwoRecord

defaultLength - Variable in class loci.common.NIOFileHandle

The original length of the file.

defaultMajor - Variable in class loci.poi.hssf.record.AxisOptionsRecord

defaultMap - Static variable in class loci.poi.hpsf.wellknown.SectionIDMap

The default section ID map.

defaultMaximum - Variable in class loci.poi.hssf.record.AxisOptionsRecord

DefaultMetadataOptions - Class in loci.formats.in

DefaultMetadataOptions() - Constructor for class loci.formats.in.DefaultMetadataOptions

Construct a new DefaultMetadataOptions.

DefaultMetadataOptions(MetadataLevel) - Constructor for class loci.formats.in.DefaultMetadataOptions

Construct a new DefaultMetadataOptions.

defaultMinimum - Variable in class loci.poi.hssf.record.AxisOptionsRecord

defaultMinMax(int) - Static method in class loci.formats.FormatTools

Get the default range for the specified pixel type.

defaultMinorUnit - Variable in class loci.poi.hssf.record.AxisOptionsRecord

defaultPlotDimensions - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

defaultrowheight - Variable in class loci.poi.hssf.model.Sheet

DefaultRowHeightRecord - Class in loci.poi.hssf.record

Title: Default Row Height Record Description: Row height for rows with undefined or not explicitly defined heights.

DefaultRowHeightRecord() - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord

DefaultRowHeightRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord

Constructs a DefaultRowHeight record and sets its fields appropriately.

defaultRWBufferSize - Static variable in class loci.common.NIOFileHandle

Default NIO buffer size to facilitate buffered I/O for read/write streams.

defaultValue - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

defaultValue - Variable in class jj2000.j2k.entropy.CBlkSizeSpec

defaultValue - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec

defaultValue - Variable in class jj2000.j2k.quantization.GuardBitsSpec

defaultValue - Variable in class jj2000.j2k.quantization.QuantStepSizeSpec

defaultValue - Variable in class loci.plugins.prefs.BooleanOption

The option's default value.

defaultValue - Variable in class loci.plugins.prefs.DoubleOption

The option's default value.

defaultValue - Variable in class loci.plugins.prefs.StringOption

The option's default value.

defimgn - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Nominal range bit of the component defining default values in QCD for main header

DEFINITION - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

deflater - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater

defMsgLogger - Static variable in class jj2000.j2k.util.FacilityManager

The default logger, for threads that have none associated with them

deftilenr - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Nominal range bit of the component defining default values in QCD for tile headers

defWatchProg - Static variable in class jj2000.j2k.util.FacilityManager

The default ProgressWatch for threads that have none associated with them.

DEG - Static variable in class ome.units.UNITS

DEGREEC - Static variable in class ome.units.UNITS

DEGREEF - Static variable in class ome.units.UNITS

DEGREER - Static variable in class ome.units.UNITS

DEKA(Unit<T>) - Static method in class ome.units.UNITS

delayTime - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

delegate - Variable in class loci.formats.in.SimplePCITiffReader

delegate - Variable in class loci.formats.services.LuraWaveServiceImpl

LuraWave decoder delegate.

delegate - Variable in class loci.poi.hpsf.SpecialPropertySet

The "real" property set SpecialPropertySet delegates to.

DelegateReader - Class in loci.formats

DelegateReader is a file format reader that selects which reader to use for a format if there are two readers which handle the same format.

DelegateReader(String, String) - Constructor for class loci.formats.DelegateReader

Constructs a new delegate reader.

DelegateReader(String, String[]) - Constructor for class loci.formats.DelegateReader

Constructs a new delegate reader.

delegates - Variable in class ome.xml.meta.AggregateMetadata

The active metadata store delegates.

delete() - Method in class loci.common.Location

Deletes this file.

delete() - Method in interface loci.poi.poifs.filesystem.Entry

Delete this Entry.

delete() - Method in class loci.poi.poifs.filesystem.EntryNode

Delete this Entry.

deleteChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty

Delete a Property

DeletedArea3DPtg - Class in loci.poi.hssf.record.formula

Title: Deleted Area 3D Ptg - 3D referecnce (Sheet + Area)

DeletedArea3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg

Creates new DeletedArea3DPtg

DeletedArea3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg

deleteData(String) - Method in class loci.tests.IOTester

DeletedRef3DPtg - Class in loci.poi.hssf.record.formula

Title: Deleted Reference 3D Ptg

DeletedRef3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg

Creates new DeletedRef3DPtg

DeletedRef3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg

deleteEntry(EntryNode) - Method in class loci.poi.poifs.filesystem.DirectoryNode

Delete an entry

deleteOnExit() - Method in class loci.common.Location

Request that this file be deleted when the JVM terminates.

deleteQuietly(File) - Method in class loci.formats.Memoizer

Attempts to delete an existing file, logging at warn if the deletion returns false or at error if an exception is thrown.

delFF - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

Flag that indicates if an FF has been delayed

delFF - Variable in class jj2000.j2k.entropy.encoder.MQCoder

If a 0xFF byte has been delayed and not yet been written to the output (in the MQ we can never have more than 1 0xFF byte in a row).

DELIMITERS - Static variable in class loci.formats.in.ImarisHDFReader

DELTA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the fourth lifting step coefficient

DELTA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the fourth lifting step coefficient

DELTA_T - Static variable in class loci.tests.testng.Configuration

DeltaRecord - Class in loci.poi.hssf.record

Title: Delta Record

DeltaRecord() - Constructor for class loci.poi.hssf.record.DeltaRecord

DeltaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DeltaRecord

Constructs a Delta record and sets its fields appropriately.

deltaT - Variable in class loci.formats.in.FV1000Reader.PlaneData

deltaT - Variable in class loci.formats.in.InCellReader.Image

deltaT - Variable in class loci.formats.in.IvisionReader

deltaT - Variable in class loci.formats.in.NiftiReader

deltaT - Variable in class loci.formats.in.ScanrReader

deltaT - Variable in class ome.xml.model.Plane

DeltavisionReader - Class in loci.formats.in

DeltavisionReader is the file format reader for Deltavision files.

DeltavisionReader() - Constructor for class loci.formats.in.DeltavisionReader

Constructs a new Deltavision reader.

DeltavisionReader.DVExtHdrFields - Class in loci.formats.in

This private class structure holds the details for the extended header.

DeltavisionReader.DVExtHdrFields(RandomAccessInputStream) - Constructor for class loci.formats.in.DeltavisionReader.DVExtHdrFields

denom - Variable in class loci.formats.tiff.TiffRational

Components of the rational's fractional representation.

denom - Variable in class org.libjpegturbo.turbojpeg.TJScalingFactor

Denominator

denomH - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

denominator - Variable in class ome.jxr.ifd.JXRRational

denomV - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

DependencyException - Exception in loci.common.services

Exception thrown when there is an object instantiation error or error processing dependencies.

DependencyException(String) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(String, Class<? extends Service>) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(String, Class<? extends Service>, Throwable) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(Throwable) - Constructor for exception loci.common.services.DependencyException

Default constructor.

depth - Variable in class loci.formats.tools.AmiraParameters

deq - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Dequantizer - Class in jj2000.j2k.quantization.dequantizer

This is the abstract class from which all dequantizers must inherit.

Dequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Constructor for class jj2000.j2k.quantization.dequantizer.Dequantizer

Initializes the source of compressed data.

DequantizerParams - Class in jj2000.j2k.quantization.dequantizer

This is the generic ineterface for dequantization parameters.

DequantizerParams() - Constructor for class jj2000.j2k.quantization.dequantizer.DequantizerParams

derived - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Whether or not the components in the current tile uses a derived quantization step size (only relevant in non reversible quantization mode).

desc - Variable in class loci.formats.gui.ComboFileFilter

Description.

desc - Variable in class loci.formats.gui.ExtensionFileFilter

Description.

desc - Variable in class loci.formats.gui.FormatFileFilter

Description.

description - Variable in class loci.formats.in.NiftiReader

description() - Method in interface loci.formats.in.PrairieMetadata.Value

description - Variable in class loci.formats.in.PrairieMetadata.ValueItem

description() - Method in class loci.formats.in.PrairieMetadata.ValueItem

description() - Method in class loci.formats.in.PrairieMetadata.ValueTable

description - Variable in class loci.formats.in.TiffReader

description - Variable in class loci.formats.in.VolocityReader.Stack

description - Variable in class loci.formats.in.ZeissCZIReader

description - Variable in class loci.formats.in.ZeissLSMReader.Recording

description - Variable in class loci.poi.ddf.EscherPropertyMetaData

DESCRIPTION - Static variable in class loci.tests.testng.Configuration

description - Variable in class ome.xml.model.Annotation

description - Variable in class ome.xml.model.Dataset

description - Variable in class ome.xml.model.Experiment

description - Variable in class ome.xml.model.ExperimenterGroup

description - Variable in class ome.xml.model.Image

description - Variable in class ome.xml.model.MicrobeamManipulation

description - Variable in class ome.xml.model.Plate

description - Variable in class ome.xml.model.PlateAcquisition

description - Variable in class ome.xml.model.Project

description - Variable in class ome.xml.model.Reagent

description - Variable in class ome.xml.model.ROI

description - Variable in class ome.xml.model.Screen

descriptions - Variable in class loci.formats.in.LIFReader

DESERIALISE - Static variable in class loci.poi.hssf.record.AbstractEscherHolderRecord

deserializer - Variable in class loci.poi.hssf.record.SSTRecord

DEST_DISTANCE_REF_KILOMETERS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

DEST_DISTANCE_REF_KNOTS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

DEST_DISTANCE_REF_MILES - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

destBands - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

source and destination bands.

destBands - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

source and destination bands.

destBitsPerSampleCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

destImage - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

destImage - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

destinationBands - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The sequence of destination bands to receive the source data.

destinationBands - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

destinationBands - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

destinationBands - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

destinationBandsCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The destination region.

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

The destination region.

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The destination bounds.

destroy() - Method in class org.libjpegturbo.turbojpeg.TJCompressor

destroy() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

details - Variable in class loci.formats.in.PerkinElmerReader

detector - Variable in class loci.formats.in.LeicaHandler.Channel

detector - Variable in class loci.formats.in.VolocityReader.Stack

DETECTOR - Static variable in class loci.tests.testng.Configuration

Detector - Class in ome.xml.model

Detector() - Constructor for class ome.xml.model.Detector

Default constructor.

Detector(Element, OMEModel) - Constructor for class ome.xml.model.Detector

Constructs Detector recursively from an XML DOM tree.

Detector(Detector) - Constructor for class ome.xml.model.Detector

Copy constructor.

detector - Variable in class ome.xml.model.DetectorSettings

DETECTOR_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of a detector.

detectorChannel - Variable in class loci.formats.in.LeicaHandler

detectorGain - Variable in class loci.formats.in.BaseZeissReader

detectorID - Variable in class loci.formats.in.MicromanagerReader.Position

detectorIndexes - Variable in class loci.formats.in.LIFReader

detectorIndices - Variable in class loci.formats.in.LeicaHandler

detectorLinks - Variable in class ome.xml.model.Annotation

detectorManufacturer - Variable in class loci.formats.in.FluoviewReader

detectorManufacturer - Variable in class loci.formats.in.MicromanagerReader.Position

detectorModel - Variable in class loci.formats.in.MicromanagerReader.Position

detectorModels - Variable in class loci.formats.in.LIFReader

detectorOffset - Variable in class loci.formats.in.BaseZeissReader

detectorOffset - Variable in class loci.formats.in.OpenlabReader

detectorOffsets - Variable in class loci.formats.in.LIFReader

detectorRefs - Variable in class loci.formats.in.ZeissCZIReader

detectors - Variable in class loci.formats.in.FEITiffReader

detectors - Variable in class loci.formats.in.LeicaHandler

detectors - Variable in class loci.formats.in.LeicaReader

detectors - Variable in class ome.xml.model.Instrument

detectorSettings - Variable in class ome.xml.model.Channel

DetectorSettings - Class in ome.xml.model

DetectorSettings() - Constructor for class ome.xml.model.DetectorSettings

Default constructor.

DetectorSettings(Element, OMEModel) - Constructor for class ome.xml.model.DetectorSettings

Constructs DetectorSettings recursively from an XML DOM tree.

DetectorSettings(DetectorSettings) - Constructor for class ome.xml.model.DetectorSettings

Copy constructor.

DetectorType - Enum in ome.xml.model.enums

DetectorType(String) - Constructor for enum ome.xml.model.enums.DetectorType

DetectorTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for DetectorType.

DetectorTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

determineType(CellValueRecordInterface) - Method in class loci.poi.hssf.usermodel.HSSFCell

used internally -- given a cell value record, figure out its type

detType - Variable in class loci.formats.in.SDTInfo

Detector type (SPC-930 in camera mode).

DEVICE_ID - Static variable in class loci.formats.in.CellSensReader

DEVICE_MANUFACTURER - Static variable in class loci.formats.in.CellSensReader

DEVICE_NAME - Static variable in class loci.formats.in.CellSensReader

DEVICE_SUBTYPE - Static variable in class loci.formats.in.CellSensReader

deviceclip - Variable in class loci.poi.hssf.usermodel.EscherGraphics2d

deviceIDs - Variable in class loci.formats.in.CellSensReader.Pyramid

deviceManufacturers - Variable in class loci.formats.in.CellSensReader.Pyramid

deviceNames - Variable in class loci.formats.in.CellSensReader.Pyramid

deviceTypes - Variable in class loci.formats.in.CellSensReader.Pyramid

devModel - Variable in class loci.formats.in.LeicaSCNReader.Image

devVersion - Variable in class loci.formats.in.LeicaSCNReader.Image

DG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

dgg - Variable in class loci.poi.hssf.model.DrawingManager

dgg - Variable in class loci.poi.hssf.model.DrawingManager2

DGG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

dgMap - Variable in class loci.poi.hssf.model.DrawingManager

DHP - Static variable in class loci.formats.codec.LosslessJPEGCodec

DHT - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

DHT - Static variable in class loci.formats.codec.LosslessJPEGCodec

DHZ - Static variable in class ome.units.UNITS

dialog - Variable in class loci.plugins.in.ThumbLoader

dialog - Static variable in class loci.poi.hssf.record.WSBoolRecord

DIAMONDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DIAMONDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Diamonds

dichroic - Variable in class loci.formats.in.FlexReader.FilterGroup

Dichroic - Class in ome.xml.model

Dichroic() - Constructor for class ome.xml.model.Dichroic

Default constructor.

Dichroic(Element, OMEModel) - Constructor for class ome.xml.model.Dichroic

Constructs Dichroic recursively from an XML DOM tree.

Dichroic(Dichroic) - Constructor for class ome.xml.model.Dichroic

Copy constructor.

dichroic - Variable in class ome.xml.model.FilterSet

dichroic - Variable in class ome.xml.model.LightPath

dichroicLinks - Variable in class ome.xml.model.Annotation

dichroicMap - Variable in class loci.formats.in.FlexReader

dichroicModels - Variable in class loci.formats.in.NikonTiffReader

DichroicRef - Class in ome.xml.model

DichroicRef() - Constructor for class ome.xml.model.DichroicRef

Default constructor.

DichroicRef(Element, OMEModel) - Constructor for class ome.xml.model.DichroicRef

Constructs DichroicRef recursively from an XML DOM tree.

DichroicRef(DichroicRef) - Constructor for class ome.xml.model.DichroicRef

Copy constructor.

dichroics - Variable in class ome.xml.model.Instrument

DICOM_MAGIC_STRING - Static variable in class loci.formats.in.DicomReader

DICOM_SUFFIXES - Static variable in class loci.formats.in.DicomReader

DicomReader - Class in loci.formats.in

DicomReader is the file format reader for DICOM files.

DicomReader() - Constructor for class loci.formats.in.DicomReader

Constructs a new DICOM reader.

dictionary - Variable in class loci.poi.hpsf.Section

Maps property IDs to section-private PID strings.

dictionaryIDToName - Variable in class loci.poi.hpsf.CustomProperties

Maps property IDs to property names.

dictionaryNameToID - Variable in class loci.poi.hpsf.CustomProperties

Maps property names to property IDs.

did_first - Static variable in class mdbtools.libmdb.backend

dieIfClosed() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

diff - Variable in class loci.formats.in.BioRadGelReader

difference(byte[], IFD) - Static method in enum loci.formats.tiff.TiffCompression

Performs in-place differencing according to the given predictor value.

DIFFERENTIAL_CORRECTION_APPLIED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDifferential" tag.

DIFFERENTIAL_CORRECTION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDifferential" tag.

DIGITAL_ZOOM_RATIO - Static variable in class loci.formats.tiff.IFD

digits(int) - Static method in class loci.plugins.in.ImporterMetadata

Computes the given value's number of digits.

dilate() - Method in class loci.plugins.util.RecordedImageProcessor

dim - Variable in class loci.poi.hssf.util.AreaReference

DIM_INDEX_1 - Static variable in class loci.formats.in.CellSensReader

DIM_INDEX_2 - Static variable in class loci.formats.in.CellSensReader

DIMDESCR - Static variable in class loci.formats.in.LeicaReader

dimension - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry

dimension - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

DIMENSION_DESCRIPTION_VOLUME - Static variable in class loci.formats.in.CellSensReader

DIMENSION_INCREMENT_ID - Static variable in class loci.formats.in.CellSensReader

DIMENSION_MEANING - Static variable in class loci.formats.in.CellSensReader

DIMENSION_NAME - Static variable in class loci.formats.in.CellSensReader

DIMENSION_NAMES - Static variable in class loci.formats.in.LeicaReader

DIMENSION_ORDER - Static variable in class loci.tests.testng.Configuration

DIMENSION_ORDER - Static variable in class ome.specification.XMLMockObjects

The default dimension order.

DIMENSION_ORDER_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the DimensionOrder attribute.

DIMENSION_SIZE - Static variable in class loci.formats.in.CellSensReader

DIMENSION_START_ID - Static variable in class loci.formats.in.CellSensReader

DIMENSION_VALUE_ID - Static variable in class loci.formats.in.CellSensReader

dimensionCount - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

dimensionEntries - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

dimensionLength - Variable in class loci.formats.out.ICSWriter

dimensionM - Variable in class loci.formats.in.ZeissLSMReader

dimensionOffset - Variable in class loci.formats.out.ICSWriter

dimensionOrder - Variable in class loci.formats.CoreMetadata

Order in which dimensions are stored.

dimensionOrder - Variable in class loci.formats.in.FluoviewReader

DimensionOrder - Enum in ome.xml.model.enums

DimensionOrder(String) - Constructor for enum ome.xml.model.enums.DimensionOrder

dimensionOrder - Variable in class ome.xml.model.Pixels

DimensionOrderEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for DimensionOrder.

DimensionOrderEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

dimensionOrdering - Variable in class loci.formats.in.CellSensReader.Pyramid

dimensionP - Variable in class loci.formats.in.ZeissLSMReader

DIMENSIONS_STRING - Static variable in class loci.formats.in.KodakReader

DimensionsRecord - Class in loci.poi.hssf.record

Title: Dimensions Record

DimensionsRecord() - Constructor for class loci.poi.hssf.record.DimensionsRecord

DimensionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DimensionsRecord

Constructs a Dimensions record and sets its fields appropriately.

DimensionSwapper - Class in loci.formats

Handles swapping the dimension order of an image series.

DimensionSwapper() - Constructor for class loci.formats.DimensionSwapper

Constructs a DimensionSwapper around a new image reader.

DimensionSwapper(IFormatReader) - Constructor for class loci.formats.DimensionSwapper

Constructs a DimensionSwapper with the given reader.

dimensionSwapper - Variable in class loci.plugins.in.ImportProcess

dimensionTag - Variable in class loci.formats.in.CellSensReader

dimOrder - Variable in class loci.formats.AxisGuesser

Original ordering of internal dimensional axes.

dims - Variable in class loci.formats.in.LeicaSCNReader.Pixels

dims - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling

dims - Variable in class loci.poi.hssf.model.Sheet

dimsloc - Variable in class loci.poi.hssf.model.Sheet

dir - Variable in class loci.formats.in.VolocityReader

dir - Static variable in class loci.poi.util.TempFile

DIRECTION_REF_MAGNETIC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSTrackRef", "GPSImgDirectionRef", and "GPSDestBearingRef" tags.

DIRECTION_REF_TRUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSTrackRef", "GPSImgDirectionRef", and "GPSDestBearingRef" tags.

directory - Variable in class loci.formats.Memoizer

Directory where all memo files should be created.

directory - Variable in class loci.formats.services.EXIFServiceImpl

DIRECTORY_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants

directoryEntry - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

DirectoryEntry - Interface in loci.poi.poifs.filesystem

This interface defines methods specific to Directory objects managed by a Filesystem instance.

directoryList - Variable in class loci.formats.in.CellWorxReader

DirectoryNode - Class in loci.poi.poifs.filesystem

Simple implementation of DirectoryEntry

DirectoryNode(DirectoryProperty, POIFSFileSystem, DirectoryNode) - Constructor for class loci.poi.poifs.filesystem.DirectoryNode

create a DirectoryNode.

directoryPosition - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

DirectoryProperty - Class in loci.poi.poifs.property

Directory property

DirectoryProperty(String) - Constructor for class loci.poi.poifs.property.DirectoryProperty

Default constructor

DirectoryProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DirectoryProperty

reader constructor

DirectoryProperty.PropertyComparator - Class in loci.poi.poifs.property

DirectoryProperty.PropertyComparator() - Constructor for class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

directoryRoot - Variable in class loci.formats.tools.FakeImage

dirty - Variable in class loci.formats.cache.CacheStrategy

Whether load order array needs to be recomputed before building the next load list.

dirty - Variable in class loci.poi.hpsf.MutableSection

If the "dirty" flag is true, the section's size must be (re-)calculated before the section is written.

dirtyByte - Variable in class loci.common.RandomAccessOutputStream

display(PrintWriter, int) - Method in class loci.poi.ddf.EscherContainerRecord

display(PrintWriter, int) - Method in class loci.poi.ddf.EscherRecord

The display methods allows escher variables to print the record names according to their hierarchy.

DISPLAY_COLOR - Static variable in class loci.formats.in.CellSensReader

DISPLAY_CONTRAST_BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader

DISPLAY_GAMMA_CORRECTION - Static variable in class loci.formats.in.CellSensReader

DISPLAY_LIMITS - Static variable in class loci.formats.in.CellSensReader

DISPLAY_LUT - Static variable in class loci.formats.in.CellSensReader

DISPLAY_MAPPING_VOLUME - Static variable in class loci.formats.in.CellSensReader

DISPLAY_MODE_OPAQUE - Static variable in class loci.poi.hssf.record.TextRecord

DISPLAY_MODE_TRANSPARENT - Static variable in class loci.poi.hssf.record.TextRecord

DISPLAY_PROCESSOR_TYPE - Static variable in class loci.formats.in.CellSensReader

DISPLAY_STACK_ID - Static variable in class loci.formats.in.CellSensReader

DISPLAY_STACK_INDEX - Static variable in class loci.formats.in.CellSensReader

DISPLAY_VISIBLE - Static variable in class loci.formats.in.CellSensReader

displayAsPercentage - Variable in class loci.poi.hssf.record.AreaRecord

displayAsPercentage - Variable in class loci.poi.hssf.record.BarRecord

displayDataBrowser(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

displayDialog(GenericDialog) - Method in class loci.plugins.in.IdDialog

Asks user whether Bio-Formats should automatically check for upgrades, and if so, checks for an upgrade and prompts user to install it.

displayDialog(GenericDialog) - Method in class loci.plugins.in.ImporterDialog

Displays the dialog, or grabs values from macro options.

displayDialog(GenericDialog) - Method in class loci.plugins.in.SeriesDialog

displayDialog(GenericDialog) - Method in class loci.plugins.in.UpgradeDialog

Asks user whether Bio-Formats should automatically check for upgrades, and if so, checks for an upgrade and prompts user to install it.

DISPLAYED_LUT_ID - Static variable in class loci.formats.in.CellSensReader

displayFormulas - Variable in class loci.poi.hssf.record.WindowTwoRecord

displayGridlines - Variable in class loci.poi.hssf.record.WindowTwoRecord

displayGuts - Variable in class loci.poi.hssf.record.WindowTwoRecord

displayguts - Static variable in class loci.poi.hssf.record.WSBoolRecord

DisplayHandler - Class in loci.plugins.in

Logic for displaying images and metadata onscreen using ImageJ.

DisplayHandler(ImportProcess) - Constructor for class loci.plugins.in.DisplayHandler

displayImage(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

Displays the given image according to the configured options.

displayImage5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

displayImages(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler

Displays the given images according to the configured options.

displayName - Variable in class loci.formats.in.OperettaReader.OperettaHandler

displayNormal(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

Displays in a normal ImageJ window.

displayOMEXML() - Method in class loci.plugins.in.DisplayHandler

Displays OME-XML metadata in a tree in its own window.

displayOriginalMetadata() - Method in class loci.plugins.in.DisplayHandler

Displays standard metadata in a table in its own window.

displayROIs(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler

displayRowColHeadings - Variable in class loci.poi.hssf.record.WindowTwoRecord

displayTag - Variable in class loci.formats.in.BaseZeissReader.Shape

displayUsage() - Method in class loci.formats.tools.MakeTestOmeTiff

displayView5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

displayZeros - Variable in class loci.poi.hssf.record.WindowTwoRecord

disposalMethod - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

disposalMethodNames - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

dispose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

dispose() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

dispose() - Method in class loci.formats.gui.CacheComponent

dispose - Variable in class loci.formats.in.GIFReader

dispose() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics

dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

distance(int, int) - Method in class loci.formats.cache.CacheStrategy

Computes the distance from the given axis value to the axis center, taking into account the axis ordering scheme.

distbufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The buffer for distortion values (avoids reallocation for each code-block), for each thread.

DISTINCT_COLOR_COUNT - Static variable in class loci.poi.hssf.util.HSSFColor

dither - Variable in class loci.formats.in.SDTInfo

Divide() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a Divide

divide(Integer) - Method in class ome.units.unit.Unit

divide(Double) - Method in class ome.units.unit.Unit

DividePtg - Class in loci.poi.hssf.record.formula

This PTG implements the standard binomial divide "/"

DividePtg() - Constructor for class loci.poi.hssf.record.formula.DividePtg

Creates new AddPtg

DividePtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DividePtg

DIVIDER - Static variable in class loci.tests.testng.TestTools

dl - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The coded (compressed) data length.

DLL_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created using DLL function SPC_save_data_to_sdtfile (no setup, only data).

dls - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of decomposition levels specifications

dls - Variable in class jj2000.j2k.entropy.PrecinctSizeSpec

Reference to wavelet number of decomposition levels for each tile-component.

dls - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The number of decomposition levels specification

DM - Static variable in class ome.units.UNITS

DM2_MAGIC_BYTES - Static variable in class loci.formats.in.GatanDM2Reader

DM3_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader

DM4_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader

DNGReader - Class in loci.formats.in

DNGReader is the file format reader for Canon DNG (TIFF) files.

DNGReader() - Constructor for class loci.formats.in.DNGReader

Constructs a new DNG reader.

DNL - Static variable in class loci.formats.codec.LosslessJPEGCodec

do_carry(int[]) - Static method in class mdbtools.libmdb.Money

DO_TIMING - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Whether to collect timing information or not: false.

DO_TIMING - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Whether to collect timing information or not: false.

DO_TIMING - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Whether to collect timing information or not: false.

doc - Variable in class loci.formats.gui.XMLWindow

doCaching - Variable in class loci.formats.tiff.TiffParser

doChannels - Variable in class loci.formats.in.CellWorxReader

doCodestreamManipulation() - Method in class jj2000.j2k.util.CodestreamManipulator

This method performs the actual manipulation of the codestream which is the reparsing for tile parts and packed packet headers

doCrop() - Method in class loci.plugins.in.ImporterOptions

document - Variable in class loci.poi.POITextExtractor

The POIDocument that's open

DOCUMENT_AUTHOR - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_COMPANY - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_BUILD_NUMBER - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_MAJOR_VERSION - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_MINOR_VERSION - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_NAME - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_PACKAGE - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_SUB_VERSION - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_KEYS - Static variable in class loci.formats.in.ICSReader

DOCUMENT_NAME - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_NAME - Static variable in class loci.formats.tiff.IFD

DOCUMENT_NOTE - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_PRODUCT - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_PRODUCT_NAME - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_PRODUCT_VERSION - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_SUMMARY_INFORMATION_ID - Static variable in class loci.poi.hpsf.wellknown.SectionIDMap

The DocumentSummaryInformation's first and second sections' format ID.

DOCUMENT_THUMB - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_TIME - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants

DOCUMENT_TYPE_HINT - Static variable in class loci.formats.in.CellSensReader

DocumentBlock - Class in loci.poi.poifs.storage

A block of document data.

DocumentBlock(RawDataBlock, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

create a document block from a raw data block

DocumentBlock(RandomAccessInputStream, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

Create a single instance initialized with data.

DocumentBlock(int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

Create a single instance initialized with default values

DocumentDescriptor - Class in loci.poi.poifs.filesystem

Class DocumentDescriptor

DocumentDescriptor(POIFSDocumentPath, String) - Constructor for class loci.poi.poifs.filesystem.DocumentDescriptor

Trivial constructor

DocumentEntry - Interface in loci.poi.poifs.filesystem

This interface defines methods specific to Document objects managed by a Filesystem instance.

DocumentInputStream - Class in loci.poi.poifs.filesystem

This class provides methods to read a DocumentEntry managed by a Filesystem instance.

DocumentInputStream(DocumentEntry, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream

Create an InputStream from the specified DocumentEntry

DocumentInputStream(POIFSDocument, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream

Create an InputStream from the specified Document

documentName - Variable in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

documentName - Variable in class loci.poi.poifs.filesystem.POIFSWriterEvent

DocumentNode - Class in loci.poi.poifs.filesystem

Simple implementation of DocumentEntry

DocumentNode(DocumentProperty, DirectoryNode) - Constructor for class loci.poi.poifs.filesystem.DocumentNode

create a DocumentNode.

DocumentOutputStream - Class in loci.poi.poifs.filesystem

This class provides a wrapper over an OutputStream so that Document writers can't accidently go over their size limits

DocumentOutputStream(OutputStream, int) - Constructor for class loci.poi.poifs.filesystem.DocumentOutputStream

Create a DocumentOutputStream

DocumentProperty - Class in loci.poi.poifs.property

Trivial extension of Property for POIFSDocuments

DocumentProperty(String, int) - Constructor for class loci.poi.poifs.property.DocumentProperty

Constructor

DocumentProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DocumentProperty

reader constructor

DocumentSummaryInformation - Class in loci.poi.hpsf

Convenience class representing a DocumentSummary Information stream in a Microsoft Office document.

DocumentSummaryInformation(PropertySet) - Constructor for class loci.poi.hpsf.DocumentSummaryInformation

Creates a DocumentSummaryInformation from a given PropertySet.

documentSummaryInformationProperties - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Contains the summary information property ID values and associated strings.

documentUpdate() - Method in class loci.plugins.config.FlexWidgets

doer - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Flag to indicate if we should try to detect errors or just ignore any error resilient information

doesContainsSheetName(String, int) - Method in class loci.poi.hssf.model.Workbook

Determines whether a workbook contains the privided sheet name.

doFormatLayout(FormatEntry) - Method in class loci.plugins.config.ConfigWindow

doGet(Comparable, int) - Method in class loci.poi.util.BinaryTree

common get logic, used to get by key or get by value

doGetNext() - Method in class loci.poi.util.BinaryTree.BinaryTreeIterator

doInPlaceCaching - Variable in class loci.formats.Memoizer

If true, then all memo files will be created in the same directory as the original file.

domains - Variable in class loci.formats.FormatReader

List of domains in which this format is used.

doMustGroup() - Method in class loci.plugins.in.ImporterOptions

doNotChangePattern - Variable in class loci.formats.FileStitcher

doNotifyAll - Variable in class jj2000.j2k.util.ThreadPool.ThreadPoolThread

doNotSizeWithWindow - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

doRecording - Variable in class loci.plugins.util.RecordedImageProcessor

doRedBlackDelete(BinaryTree.Node) - Method in class loci.poi.util.BinaryTree

complicated red-black delete stuff.

doRedBlackDeleteFixup(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree

complicated red-black delete stuff.

doRedBlackInsert(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree

complicated red-black insert stuff.

doRemove(Comparable, int) - Method in class loci.poi.util.BinaryTree

common remove logic (remove by key or remove by value)

doStitchTiles() - Method in class loci.plugins.in.ImporterOptions

doT - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

DOT - Static variable in class loci.formats.ResourceNamer

DOT_RANGE - Static variable in class loci.formats.tiff.IFD

doTest() - Method in class loci.tests.testng.Configuration

DOTTED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DotTestListener - Class in loci.tests.testng

A TestNG listener that displays a "." for each passed test, an "F" for each failure and an "S" for each skip.

DotTestListener() - Constructor for class loci.tests.testng.DotTestListener

DOUBLE - Static variable in class loci.formats.FormatTools

Identifies the DOUBLE data type used to store pixel values.

DOUBLE - Static variable in class loci.formats.in.CellSensReader

DOUBLE - Static variable in class loci.formats.in.GatanReader

DOUBLE - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DOUBLE_2 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_2_2 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_3 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_3_3 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_4 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_4_4 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_ARRAY_2 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_ARRAY_3 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_INTERVAL - Static variable in class loci.formats.in.CellSensReader

DOUBLE_RECT - Static variable in class loci.formats.in.CellSensReader

DOUBLE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

DoubleAnnotation - Class in ome.xml.model

DoubleAnnotation() - Constructor for class ome.xml.model.DoubleAnnotation

Default constructor.

DoubleAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.DoubleAnnotation

Constructs DoubleAnnotation recursively from an XML DOM tree.

DoubleAnnotation(DoubleAnnotation) - Constructor for class ome.xml.model.DoubleAnnotation

Copy constructor.

doubleAnnotations - Variable in class ome.xml.model.StructuredAnnotations

doubleCapacity() - Method in class loci.formats.codec.ByteVector

DoubleList - Class in loci.poi.util

A List of double's; as full an implementation of the java.util.List interface as possible, with an eye toward minimal creation of objects the mimicry of List is as follows: if possible, operations designated 'optional' in the List interface are attempted wherever the List interface refers to an Object, substitute double wherever the List interface refers to a Collection or List, substitute DoubleList the mimicry is not perfect, however: operations involving Iterators or ListIterators are not supported remove(Object) becomes removeValue to distinguish it from remove(int index) subList is not supported

DoubleList() - Constructor for class loci.poi.util.DoubleList

create an DoubleList of default size

DoubleList(DoubleList) - Constructor for class loci.poi.util.DoubleList

create a copy of an existing DoubleList

DoubleList(int) - Constructor for class loci.poi.util.DoubleList

create an DoubleList with a predefined initial size

DoubleList2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of doubles.

DoubleList2d() - Constructor for class loci.poi.util.DoubleList2d

DoubleOption - Class in loci.plugins.prefs

A double option for one of the plugins.

DoubleOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.DoubleOption

Constructs a double option with the parameters from the given map.

DoubleOption(String, boolean, String, String, double) - Constructor for class loci.plugins.prefs.DoubleOption

Constructs a double option with the given parameters.

doublesToBytes(double[], boolean) - Static method in class loci.common.DataTools

Translates an array of double values into an array of byte values.

doubleToBytes(double, boolean) - Static method in class loci.common.DataTools

Translates the double value into an array of eight bytes.

doubleValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a double.

doUpgradeCheck() - Method in class loci.plugins.in.ImporterOptions

download(URLConnection) - Static method in class loci.plugins.config.InstallWizard

download(URLConnection, File) - Static method in class loci.plugins.config.InstallWizard

doWrite(int) - Method in class loci.common.NIOFileHandle

doWriteData(OutputStream, byte[]) - Method in class loci.poi.poifs.storage.BigBlock

Default implementation of write for extending classes that contain their data in a simple array of bytes.

doZ - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

DP80_FRAME_CENTERING - Static variable in class loci.formats.in.CellSensReader

DPA - Static variable in class ome.units.UNITS

DQT - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

DQT - Static variable in class loci.formats.codec.LosslessJPEGCodec

draft - Static variable in class loci.poi.hssf.record.PrintSetupRecord

draw(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

draw(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

draw3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawAreaHeight - Variable in class loci.poi.hssf.usermodel.HSSFPolygon

drawAreaWidth - Variable in class loci.poi.hssf.usermodel.HSSFPolygon

drawBytes(byte[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawChars(char[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawColour - Variable in class loci.formats.in.BaseZeissReader.Shape

drawDot(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

DrawingDump - Class in loci.poi.util

Dump out the aggregated escher records

DrawingDump() - Constructor for class loci.poi.util.DrawingDump

drawingGroupExists(short) - Method in class loci.poi.hssf.model.DrawingManager

drawingGroupExists(short) - Method in class loci.poi.hssf.model.DrawingManager2

drawingGroupId - Variable in class loci.poi.hssf.record.EscherAggregate

DrawingGroupRecord - Class in loci.poi.hssf.record

DrawingGroupRecord() - Constructor for class loci.poi.hssf.record.DrawingGroupRecord

DrawingGroupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingGroupRecord

drawingGroups - Variable in class loci.poi.hssf.model.DrawingManager2

DrawingManager - Class in loci.poi.hssf.model

Provides utilities to manage drawing groups.

DrawingManager(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager

drawingManager - Variable in class loci.poi.hssf.model.Workbook

drawingManager - Variable in class loci.poi.hssf.record.EscherAggregate

DrawingManager2 - Class in loci.poi.hssf.model

Provides utilities to manage drawing groups.

DrawingManager2(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager2

DrawingRecord - Class in loci.poi.hssf.record

DrawingRecord() - Constructor for class loci.poi.hssf.record.DrawingRecord

DrawingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecord

DrawingRecordForBiffViewer - Class in loci.poi.hssf.record

This is purely for the biff viewer.

DrawingRecordForBiffViewer() - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer

DrawingRecordForBiffViewer(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer

DrawingSelectionRecord - Class in loci.poi.hssf.record

DrawingSelectionRecord() - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord

DrawingSelectionRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord

drawLine(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor

drawPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRect(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(String) - Method in class loci.plugins.util.RecordedImageProcessor

drawString(String, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawStyle - Variable in class loci.formats.in.BaseZeissReader.Shape

drawTicks - Variable in class loci.poi.hssf.record.LineFormatRecord

DRI - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

DRI - Static variable in class loci.formats.codec.LosslessJPEGCodec

DRI - Static variable in class loci.formats.services.JPEGTurboServiceImpl

drivePictDecoder(int) - Method in class loci.formats.in.PictReader

Handles the opcodes in the PICT file.

dropDocument(POIFSReaderListener, DocumentDescriptor) - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

DS - Static variable in class loci.formats.in.DicomReader

DS - Static variable in class ome.units.UNITS

DSFRecord - Class in loci.poi.hssf.record

Title: Double Stream Flag Record

DSFRecord() - Constructor for class loci.poi.hssf.record.DSFRecord

DSFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DSFRecord

Constructs a DBCellRecord and sets its fields appropriately.

dsInf - Variable in class loci.poi.POIDocument

Holds further metadata on our document

dstData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

dstData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

dstData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

dstHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The height of the region of the destination image to be written.

dstHeight - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

dstIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

dstIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

dstMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The X coordinate of the upper left pixel to be written in the destination image.

dstMinX - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The Y coordinate of the upper left pixel to be written in the destination image.

dstMinY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The width of the region of the destination image to be written.

dstWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstXOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The horizontal destination offset used, along with sourceXOffset and subsampleX, to map between horizontal source and destination pixel coordinates.

dstXOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstYOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The vertical destination offset used, along with sourceYOffset and subsampleY, to map between horizontal source and destination pixel coordinates.

dstYOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

DT - Static variable in class loci.formats.in.DicomReader

dtype - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

Current data type

dualCamera - Variable in class loci.formats.in.MetamorphHandler

dualCamera - Variable in class loci.formats.in.MetamorphTiffReader

DUMMY_PIXEL - Static variable in class loci.formats.out.EPSWriter

DummyGraphics2d - Class in loci.poi.hssf.usermodel

DummyGraphics2d() - Constructor for class loci.poi.hssf.usermodel.DummyGraphics2d

DummyMetadata - Class in loci.formats.meta

DummyMetadata() - Constructor for class loci.formats.meta.DummyMetadata

DummyMetadata - Class in ome.xml.meta

A dummy implementation for MetadataStore and MetadataRetrieve that is used when no other metadata implementations are available.

DummyMetadata() - Constructor for class ome.xml.meta.DummyMetadata

dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWCompressor

dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

dump(byte[], int, int, PrintStream) - Method in class loci.poi.ddf.EscherDump

Decodes the escher stream from a byte array and dumps the results to a print stream.

dump(int, byte[], PrintStream) - Method in class loci.poi.ddf.EscherDump

dump - Variable in class loci.poi.hssf.dev.BiffViewer

dump() - Method in class loci.poi.hssf.dev.BiffViewer.RecordDetails

dump(byte[], long, OutputStream, int, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to an OutputStream

dump(byte[], long, OutputStream, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to an OutputStream

dump(byte[], long, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to a String

dump(long) - Static method in class loci.poi.util.HexDump

dump(byte) - Static method in class loci.poi.util.HexDump

dump(InputStream, PrintStream, int, int) - Static method in class loci.poi.util.HexDump

Dumps bytesToDump bytes to an output stream.

dump() - Method in class mdbtools.dbengine.MemoryData

dumpBytes() - Method in class loci.poi.hssf.dev.BiffViewer.BiffviewRecordInputStream

dumpDrawingGroupRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Spits out a list of all the drawing records in the workbook.

dumpDrawingRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Aggregates the drawing records and dumps the escher record hierarchy to the standard output.

dumpNormal(Record, int, short, short) - Static method in class loci.poi.hssf.dev.BiffViewer

dumpOld(long, InputStream, PrintStream) - Method in class loci.poi.ddf.EscherDump

This version of dump is a translation from the open office escher dump routine.

dumpXML(String, Document, Element) - Static method in class loci.common.xml.XMLTools

Dumps the given OME-XML DOM tree to a string.

dumpXML(String, Document, Element, boolean) - Static method in class loci.common.xml.XMLTools

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in class ome.xml.meta.AbstractOMEXMLMetadata

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in interface ome.xml.meta.OMEXMLMetadata

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in class ome.xml.meta.OMEXMLMetadataImpl

duplicate(Class<? extends IFormatReader>) - Method in class loci.formats.ReaderWrapper

Performs a deep copy of the reader, including nested wrapped readers.

duplicate(Class<? extends IFormatWriter>) - Method in class loci.formats.WriterWrapper

Performs a deep copy of the writer, including nested wrapped writers.

duplicate() - Method in class loci.plugins.util.RecordedImageProcessor

duplicateRecurse(Class<? extends IFormatReader>) - Method in class loci.formats.ReaderWrapper

duplicateRecurse(Class<? extends IFormatWriter>) - Method in class loci.formats.WriterWrapper

DV - Static variable in class ome.units.UNITS

DV_MAGIC_BYTES_1 - Static variable in class loci.formats.in.DeltavisionReader

DV_MAGIC_BYTES_2 - Static variable in class loci.formats.in.DeltavisionReader

DW - Static variable in class ome.units.UNITS

DWORD - Static variable in class loci.formats.in.CellSensReader

dwt - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Reference to the DWT module

dx1 - Variable in class loci.poi.hssf.usermodel.HSSFAnchor

dx2 - Variable in class loci.poi.hssf.usermodel.HSSFAnchor

dy1 - Variable in class loci.poi.hssf.usermodel.HSSFAnchor

dy2 - Variable in class loci.poi.hssf.usermodel.HSSFAnchor

dyeName - Variable in class loci.formats.in.FV1000Reader.ChannelData

dyeName - Variable in class loci.formats.in.LeicaHandler.MultiBand

dyes - Variable in class loci.formats.in.ND2Handler

DYNAMIC_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

E

ealDE - Variable in class loci.formats.in.SDTInfo

EBCOTLayer - Class in jj2000.j2k.entropy.encoder

This class holds information about each layer that is to be, or has already been, allocated .

EBCOTLayer() - Constructor for class jj2000.j2k.entropy.encoder.EBCOTLayer

EBCOTRateAllocator - Class in jj2000.j2k.entropy.encoder

This implements the EBCOT post compression rate allocation algorithm.

EBCOTRateAllocator(CodedCBlkDataSrcEnc, LayersInfo, CodestreamWriter, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Initializes the EBCOT rate allocator of entropy coded data.

ECAT7_MAGIC - Static variable in class loci.formats.in.Ecat7Reader

Ecat7Reader - Class in loci.formats.in

Ecat7Reader is the file format reader for ECAT 7 files.

Ecat7Reader() - Constructor for class loci.formats.in.Ecat7Reader

Constructs a new ECAT7 reader.

ecopts - Variable in class jj2000.j2k.decoder.DecoderSpecs

The Entropy decoder options specifications

ecs - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

ECS_GRAY - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

ECS_sRGB - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

The enumerated color space defined in JP2 file format.

ECS_YCC - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

EditTiffG - Class in loci.formats.tools

Provides a GUI for editing TIFF file comments.

EditTiffG() - Constructor for class loci.formats.tools.EditTiffG

EFBiffViewer - Class in loci.poi.hssf.dev

EFBiffViewer() - Constructor for class loci.poi.hssf.dev.EFBiffViewer

Creates a new instance of EFBiffViewer

effectiveFieldCount - Variable in class loci.formats.in.FlexReader

EFI_HEIGHT_MAP - Static variable in class loci.formats.in.CellSensReader

EFI_SHARPNESS_MAP - Static variable in class loci.formats.in.CellSensReader

EFI_STACK - Static variable in class loci.formats.in.CellSensReader

EFI_TEXTURE_MAP - Static variable in class loci.formats.in.CellSensReader

ehs - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Reference to the stream where to read from

el(NodeList, int) - Method in class loci.formats.in.PrairieMetadata

Gets the indexth element from the given list of nodes.

ElectricPotential - Class in ome.units.quantity

A wrapper for the ElectricPotential class from the units implementation.

ElectricPotential(Number, Unit<ElectricPotential>) - Constructor for class ome.units.quantity.ElectricPotential

ELEMENT_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer

ELEMENT_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer

elementInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

elementLength - Variable in class loci.formats.in.DicomReader

elementName - Variable in class loci.formats.in.LeicaHandler

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

Cache the element names for this box's xml definition

elements - Variable in class loci.formats.FilePatternBlock

Elements within this block, e.g.

elements - Variable in class loci.poi.util.IntMapper

ELLIPSE - Static variable in class loci.formats.in.FV1000Reader

ELLIPSE - Static variable in class loci.formats.in.ZeissLSMReader

Ellipse - Class in ome.xml.model

Ellipse() - Constructor for class ome.xml.model.Ellipse

Default constructor.

Ellipse(Element, OMEModel) - Constructor for class ome.xml.model.Ellipse

Constructs Ellipse recursively from an XML DOM tree.

Ellipse(Ellipse) - Constructor for class ome.xml.model.Ellipse

Copy constructor.

EM_DAC - Static variable in class loci.formats.in.FluoviewReader

EM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the electron microscopy domain.

EM_GAIN - Static variable in class loci.formats.in.CellSensReader

email - Variable in class ome.xml.model.Experimenter

embedded_stream - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

EMBEDDED_STREAM - Static variable in class loci.formats.in.VolocityReader

embeddedImages - Variable in class loci.formats.in.TillVisionReader

EmbeddedObjectRefSubRecord - Class in loci.poi.hssf.record

A sub-record within the OBJ record which stores a reference to an object stored in a separate entry within the OLE2 compound file.

EmbeddedObjectRefSubRecord() - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

EmbeddedObjectRefSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Constructs an EmbeddedObjectRef record and sets its fields appropriately.

embeddedOffset - Variable in class loci.formats.in.TillVisionReader

emission - Variable in class loci.formats.in.FlexReader.FilterGroup

emission - Variable in class loci.formats.in.ZeissCZIReader.Channel

EMISSION_WAVELENGTH - Static variable in class loci.tests.testng.Configuration

EMISSION_WAVELENGTH_UNIT - Static variable in class loci.tests.testng.Configuration

emissionFilter - Variable in class loci.formats.in.FV1000Reader.ChannelData

emissionFilterLinks - Variable in class ome.xml.model.FilterSet

emissionFilterLinks - Variable in class ome.xml.model.LightPath

EmissionFilterRef - Class in ome.xml.model

EmissionFilterRef() - Constructor for class ome.xml.model.EmissionFilterRef

Default constructor.

EmissionFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.EmissionFilterRef

Constructs EmissionFilterRef recursively from an XML DOM tree.

EmissionFilterRef(EmissionFilterRef) - Constructor for class ome.xml.model.EmissionFilterRef

Copy constructor.

emissionWavelength - Variable in class loci.formats.in.SVSReader

emissionWavelength - Variable in class ome.xml.model.Channel

Emit(String) - Method in class loci.poi.hssf.model.FormulaParser

Output a String with Tab

EmitLn(String) - Method in class loci.poi.hssf.model.FormulaParser

Output a String with Tab and CRLF

EMPTY_INTERPOLATED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

EMPTY_NOT_PLOTTED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

EMPTY_STRING - Static variable in class loci.formats.in.IM3Reader

EMPTY_STRING - Static variable in class loci.poi.hssf.record.SSTRecord

EMPTY_ZERO - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

emptyComplexPart - Variable in class loci.poi.ddf.EscherArrayProperty

When reading a property from data stream remeber if the complex part is empty and set this flag.

EmptyImage - Class in com.sun.media.imageioimpl.plugins.tiff

EmptyImage(int, int, int, int, int, int, int, int, SampleModel, ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.EmptyImage

emWave - Variable in class loci.formats.in.BDReader

emWave - Variable in class loci.formats.in.FV1000Reader.ChannelData

emWave - Variable in class loci.formats.in.ImarisHDFReader

emWave - Variable in class loci.formats.in.ND2Handler

emWave - Variable in class loci.formats.in.NikonTiffReader

emWavelen - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Emission filter wavelength.

emWavelength - Variable in class loci.formats.in.BaseZeissReader

emWavelength - Variable in class loci.formats.in.MetamorphReader

The TIFF's emWavelength

emWavelength - Variable in class loci.formats.in.OperettaReader.Plane

emWaves - Variable in class loci.formats.in.InCellReader

emWaves - Variable in class loci.formats.in.LeicaReader

enableCT - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

enabledBox - Variable in class loci.plugins.config.ConfigWindow

enableIJLogging(boolean) - Static method in class loci.common.DebugTools

Enable SLF4J logging using logback, in the context of ImageJ.

enableIJLogging(boolean, Appender<ILoggingEvent>) - Static method in class loci.common.LogbackTools

enableLogging(String) - Static method in class loci.common.DebugTools

Attempts to enable SLF4J logging via logback or log4j without an external configuration file.

enableLogging(String) - Static method in class loci.common.Log4jTools

Attempts to enable SLF4J logging via log4j without an external configuration file.

enableLogging(String) - Static method in class loci.common.LogbackTools

Attempts to enable SLF4J logging via logback without an external configuration file.

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Encodes the supplied image data, writing to the currently set ImageOutputStream.

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor

encode(int, int, int, BitOutputBuffer) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Encodes information for the specified element of the tree, given the threshold and sends it to the 'out' stream.

encode1D(byte[], int, int, int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

One-dimensionally encode a row of data using CCITT Huffman compression.

encodeMainHeader() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Write main header.

encodePacket(int, int, int, int, CBlkRateDistStats[][], int[][], BitOutputBuffer, byte[], int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Encodes a packet and returns the buffer containing the encoded packet header.

encodeRLE(byte[], int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor

Encode a row of data using Modified Huffman Compression also known as CCITT RLE (Run Lenth Encoding).

encodeRLE4(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

encodeRLE8(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

encoderVersion - Variable in class ome.jxr.parser.FileParser

encodeT4(boolean, boolean, byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

Encode a buffer of data using CCITT T.4 Compression also known as Group 3 facsimile compression.

encodeT6(byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor

Encode a buffer of data using CCITT T.6 Compression also known as Group 4 facsimile compression.

encodeTilePartHeader(int, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes tile-part header.

encodeYUV(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Encode the uncompressed source image associated with this compressor instance and output a YUV planar image to the given destination buffer.

encodeYUV(int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Encode the uncompressed source image associated with this compressor instance and return a buffer containing a YUV planar image.

encodeYUV(BufferedImage, byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Encode the uncompressed source image stored in srcImage and output a YUV planar image to the given destination buffer.

encodeYUV(BufferedImage, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Encode the uncompressed source image stored in srcImage and return a buffer containing a YUV planar image.

encodeYUV(byte[], int, int, int, int, byte[], int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

encodeYUV(int[], int, int, int, int, byte[], int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

ENCODING - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

encoding - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

ENCODING - Static variable in class loci.common.Constants

encoding - Variable in class loci.common.RandomAccessInputStream

ENCODING - Static variable in class loci.formats.in.LIFReader

The encoding used in this file.

encoding - Variable in class loci.formats.in.NRRDReader

Data encoding.

encoding - Variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING - Static variable in class loci.poi.util.StringUtil

ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

POI will now properly handle unicode strings without forceing an encoding

ENCODING_UNCHANGED - Static variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

POI will now properly handle unicode strings without forceing an encoding

encodingRate - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The bitrate in bits-per-pixel for encoding.

encodingRate - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

The bitrate in bits-per-pixel for encoding.

end - Variable in class loci.formats.FilePatternBlock

END - Static variable in class loci.formats.in.GIFReader

end - Variable in class loci.formats.Modulo

END_OF_CHAIN - Static variable in interface loci.poi.poifs.common.POIFSConstants

endBlock() - Method in class loci.common.CBZip2InputStream

endDocument() - Method in class loci.formats.in.ND2Handler

endDocument() - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler

endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the end double underline

endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the end double underline

endElement(String, String, String) - Method in class loci.formats.in.BioRadSCNReader.SCNHandler

endElement(String, String, String) - Method in class loci.formats.in.FEITiffReader.FEIHandler

endElement(String, String, String) - Method in class loci.formats.in.FlexReader.FlexHandler

endElement(String, String, String) - Method in class loci.formats.in.InCellReader.InCellHandler

endElement(String, String, String) - Method in class loci.formats.in.InCellReader.MinimalInCellHandler

endElement(String, String, String) - Method in class loci.formats.in.IvisionReader.IvisionHandler

endElement(String, String, String) - Method in class loci.formats.in.LeicaHandler

endElement(String, String, String) - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

endElement(String, String, String, Attributes) - Method in class loci.formats.in.ND2Handler

endElement(String, String, String) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler

endElement(String, String, String) - Method in class loci.formats.in.OperettaReader.OperettaHandler

endElement(String, String, String) - Method in class loci.formats.in.ScanrReader.ScanrHandler

endElement(String, String, String) - Method in class loci.formats.in.ZeissTIFFHandler

endElement(String, String, String) - Method in class loci.formats.out.OMEXMLWriter.OMEHandler

ENDIANNESS_OFFSET - Static variable in class loci.formats.in.MRCReader

EndianType - Interface in jj2000.j2k.io

This interface defines constants for the two types of byte ordering: little- and big-endian.

endIndex - Variable in class loci.formats.FilePattern

Indices into the pattern indicating the end of a numerical block.

endInsertEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

endOfInfo_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

reserved end of data code based on code size

endPointer - Variable in class loci.formats.in.LIFReader

endPos - Variable in class loci.formats.out.AVIWriter

EndRecord - Class in loci.poi.hssf.record

The end record defines the end of a block of records for a (Graphing) data object.

EndRecord() - Constructor for class loci.poi.hssf.record.EndRecord

EndRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndRecord

Constructs a EndRecord record and sets its fields appropriately.

endReplacePixels() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

EndSubRecord - Class in loci.poi.hssf.record

The end data record is used to denote the end of the subrecords.

EndSubRecord() - Constructor for class loci.poi.hssf.record.EndSubRecord

EndSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndSubRecord

Constructs a End record and sets its fields appropriately.

endTime - Variable in class loci.formats.in.SDTInfo

Macro time of the last photon.

endTime - Variable in class ome.xml.model.PlateAcquisition

endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the end underline

endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the end underline

endWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

energyConvFactor - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Energy conversion factor.

Engine - Class in mdbtools.dbengine

Engine is the entry point into a java based database backend The datastore for the data is un-important since the engine communiates with the data via a set of defined interfaces.

Engine() - Constructor for class mdbtools.dbengine.Engine

ENHANCED_DYNAMIC_RANGE - Static variable in class loci.formats.in.CellSensReader

enJJ2KMarkSeg - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Whether or not to write the JJ2000 COM marker segment

ensureCapacity(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

ensureCapacity(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

ensureNonExisting(String) - Method in class loci.formats.tools.MakeTestOmeTiff

ensureSection2() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Creates section 2 if it is not already present.

entdec - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

entensions - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

entries - Variable in class loci.formats.in.ZeissCZIReader.AttachmentDirectory

entries - Variable in class loci.formats.in.ZeissCZIReader.Directory

entries - Variable in class ome.jxr.ifd.IFDMetadata

ENTRIES_COUNT_SIZE - Static variable in class ome.jxr.constants.IFD

entriesPerBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock

entriesPerXBATBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock

EntropyCoder - Class in jj2000.j2k.entropy.encoder

This abstract class provides the general interface for block-based entropy encoders.

EntropyCoder(CBlkQuantDataSrcEnc) - Constructor for class jj2000.j2k.entropy.encoder.EntropyCoder

Initializes the source of quantized wavelet coefficients.

EntropyDecoder - Class in jj2000.j2k.entropy.decoder

This is the abstract class from which all entropy decoders must inherit.

EntropyDecoder(CodedCBlkDataSrcDec) - Constructor for class jj2000.j2k.entropy.decoder.EntropyDecoder

Initializes the source of compressed data.

Entry - Interface in loci.poi.poifs.filesystem

This interface provides access to an object managed by a Filesystem instance.

entry - Variable in class mdbtools.libmdb.MdbTableDef

ENTRY_SIZE - Static variable in class ome.jxr.constants.IFD

ENTRY_TAG_SIZE - Static variable in class ome.jxr.constants.IFD

ENTRY_TYPE_COUNT_SIZE - Static variable in class ome.jxr.constants.IFD

ENTRY_TYPE_SIZE - Static variable in class ome.jxr.constants.IFD

ENTRY_VALUE_SIZE - Static variable in class ome.jxr.constants.IFD

entryCount - Variable in class loci.common.ZipHandle

entryName - Variable in class loci.common.ZipHandle

entryName - Variable in class loci.formats.in.ZipReader

EntryNode - Class in loci.poi.poifs.filesystem

Abstract implementation of Entry Extending classes should override isDocument() or isDirectory(), as appropriate Extending classes must override isDeleteOK()

EntryNode(Property, DirectoryNode) - Constructor for class loci.poi.poifs.filesystem.EntryNode

create a DocumentNode.

entryOffsets - Variable in class ome.jxr.ifd.IFDContainer

entrySet() - Method in class loci.poi.util.BinaryTree

Returns a set view of the mappings contained in this map.

entrySetByValue() - Method in class loci.poi.util.BinaryTree

Returns a set view of the mappings contained in this map.

entryToString(Object, String) - Static method in class loci.formats.tools.AmiraParameters

entryType - Variable in enum ome.jxr.ifd.IFDEntry

Enumeration - Interface in ome.xml.model.enums

Abstract superclass for all enumerations.

EnumerationException - Exception in ome.xml.model.enums

EnumerationException is the exception thrown when an enumeration is invalid or not found.

EnumerationException() - Constructor for exception ome.xml.model.enums.EnumerationException

EnumerationException(String) - Constructor for exception ome.xml.model.enums.EnumerationException

EnumerationException(String, Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException

EnumerationException(Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException

enumerations - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

EnumException - Exception in loci.common.enumeration

EnumException() - Constructor for exception loci.common.enumeration.EnumException

EnumException(String) - Constructor for exception loci.common.enumeration.EnumException

EnumException(String, Throwable) - Constructor for exception loci.common.enumeration.EnumException

EnumException(Throwable) - Constructor for exception loci.common.enumeration.EnumException

ENV_SUFFIX - Static variable in class loci.formats.in.PrairieReader

ENVELOPE_10_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

ENVELOPE_CS_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

ENVELOPE_DL_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

ENVELOPE_MONARCH_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

envFile - Variable in class loci.formats.in.PrairieReader

The associated XML files.

EOC - Static variable in interface jj2000.j2k.codestream.Markers

End of codestream (EOC): 0xFFD9

EOD - Static variable in class loci.poi.poifs.filesystem.DocumentInputStream

EOF - Static variable in class loci.common.CBZip2InputStream

eof() - Method in class loci.poi.poifs.storage.RawDataBlock

When we read the data, did we hit end of file?

EOF_ERROR_MSG - Static variable in class loci.common.AbstractNIOHandle

Error message to be used when instantiating an EOFException.

eofByte - Variable in class loci.formats.codec.BitBuffer

Deprecated.

eofFlag - Variable in class loci.formats.codec.BitBuffer

Deprecated.

eofLoc - Variable in class loci.poi.hssf.model.Sheet

EOFRecord - Class in loci.poi.hssf.record

End Of File record.

EOFRecord() - Constructor for class loci.poi.hssf.record.EOFRecord

EOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EOFRecord

Constructs a EOFRecord record and sets its fields appropriately.

EOI - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

EOI - Static variable in class loci.formats.codec.LosslessJPEGCodec

EOI - Static variable in class loci.formats.services.JPEGTurboServiceImpl

EOI_CODE - Static variable in class loci.formats.codec.LZWCodec

EOL - Static variable in class loci.poi.util.HexDump

EPH - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies whether end of packet header (EPH) markers should be used.

EPH - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies whether end of packet header (EPH) markers should be used.

EPH - Static variable in interface jj2000.j2k.codestream.Markers

End of packet header (EPH): 0xFF92

EPH_LENGTH - Static variable in interface jj2000.j2k.codestream.Markers

Length of EPH marker (in bytes)

ephMarker - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Array used to store the EPH markers values

ephs - Variable in class jj2000.j2k.decoder.DecoderSpecs

The End of Packet Headers (EPH) markers specifications

ephUsed - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Whether or not EPH marker are used

EPOCH_DIFF - Static variable in class loci.poi.hpsf.Util

The difference between the Windows epoch (1601-01-01 00:00:00) and the Unix epoch (1970-01-01 00:00:00) in milliseconds: 11644473600000L.

EPSILON - Static variable in class loci.common.Constants

EPSReader - Class in loci.formats.in

Reader is the file format reader for Encapsulated PostScript (EPS) files.

EPSReader() - Constructor for class loci.formats.in.EPSReader

Constructs a new EPS reader.

EPSWriter - Class in loci.formats.out

EPSWriter is the file format writer for Encapsulated PostScript (EPS) files.

EPSWriter() - Constructor for class loci.formats.out.EPSWriter

epxDiv - Variable in class loci.formats.in.SDTInfo

equal(Length, Length) - Static method in class loci.formats.in.PrairieReader

Determines whether the two Length values are equal.

equal(byte[], byte[]) - Static method in class loci.poi.hpsf.Util

Checks whether two byte arrays a and b are equal.

Equal() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a test for Equality

EqualPtg - Class in loci.poi.hssf.record.formula

EqualPtg() - Constructor for class loci.poi.hssf.record.formula.EqualPtg

Creates new AddPtg

EqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.EqualPtg

equalReaders(IFormatReader, IFormatReader) - Static method in class loci.formats.FormatTools

Check if the two given readers are equal.

equals(Object) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

equals(Object) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

equals(int[], int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Tests if the 'obj' object is the same filter as this one.

equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Tests if the 'obj' object is the same filter as this one.

equals(Object) - Method in class loci.common.Location

equals(Object) - Method in class loci.common.Region

equals(Object) - Method in class loci.formats.in.CellSensReader.TileCoordinate

equals(Object) - Method in class loci.formats.in.MetamorphTiffReader.Well

equals(Object) - Method in class loci.formats.in.ZeissCZIReader.Coordinate

equals(Node, Node) - Method in class loci.formats.services.OMEXMLServiceImpl

Compares two Elements for equality.

equals(Object) - Method in class loci.formats.tiff.TiffRational

Indicates whether some other object is "equal to" this one.

equals(Object) - Method in class loci.formats.TileStitcher.TileCoordinate

equals(Object) - Method in class loci.plugins.config.FormatEntry

equals(Object) - Method in class loci.plugins.prefs.OptionsList

equals(Object) - Method in class loci.poi.ddf.EscherComplexProperty

Determine whether this property is equal to another property.

equals(Object) - Method in class loci.poi.ddf.EscherSimpleProperty

Returns true if one escher property is equal to another.

equals(Object) - Method in class loci.poi.hpsf.ClassID

Checks whether this ClassID is equal to another object.

equals(Object) - Method in class loci.poi.hpsf.Property

Compares two properties.

equals(Object) - Method in class loci.poi.hpsf.PropertySet

Returns true if the PropertySet is equal to the specified parameter, else false.

equals(Object) - Method in class loci.poi.hpsf.Section

Checks whether this section is equal to another object.

equals(Object) - Method in class loci.poi.hpsf.SpecialPropertySet

equals(Collection, Collection) - Static method in class loci.poi.hpsf.Util

Checks whether two collections are equal.

equals(Object[], Object[]) - Static method in class loci.poi.hpsf.Util

Compares to object arrays with regarding the objects' order.

equals(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

equals(Object) - Method in class loci.poi.hssf.record.BlankRecord

equals(Object) - Method in class loci.poi.hssf.record.BoolErrRecord

equals(Object) - Method in class loci.poi.hssf.record.formula.Area3DPtg

equals(Object) - Method in class loci.poi.hssf.record.FormulaRecord

equals(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord

equals(Object) - Method in class loci.poi.hssf.record.NumberRecord

equals(Object) - Method in class loci.poi.hssf.record.RowRecord

equals(Object) - Method in class loci.poi.hssf.record.SSTRecord

equals(Object) - Method in class loci.poi.hssf.record.UnicodeString

Our handling of equals is inconsistent with compareTo.

equals(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow

equals(Region) - Method in class loci.poi.hssf.util.Region

equals(Object) - Method in class loci.poi.poifs.filesystem.DocumentDescriptor

equality.

equals(Object) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

equality.

equals(Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

Object equality, implemented as object identity

equals(Object) - Method in class loci.poi.util.BinaryTree.Node

Compares the specified object with this entry for equality.

equals(Object) - Method in class loci.poi.util.DoubleList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.poi.util.IntList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.poi.util.ShortList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.tests.testng.Configuration

equals(ConversionTest.Plane) - Method in class loci.tests.testng.ConversionTest.Plane

equals(Object) - Method in class mdbtools.dbengine.sql.Condition

EQUALS - Static variable in class mdbtools.dbengine.sql.Equation

equals(Object) - Method in class mdbtools.dbengine.sql.Equation

equals(Object) - Method in class mdbtools.dbengine.sql.FQColumn

equals(Object) - Method in class mdbtools.dbengine.sql.Join

equals(Object[], Object[]) - Method in class mdbtools.dbengine.tasks.AggregateQuery

equals(Object) - Method in class ome.units.quantity.Angle

equals(Object) - Method in class ome.units.quantity.ElectricPotential

equals(Object) - Method in class ome.units.quantity.Frequency

equals(Object) - Method in class ome.units.quantity.Length

equals(Object) - Method in class ome.units.quantity.Power

equals(Object) - Method in class ome.units.quantity.Pressure

equals(Object) - Method in class ome.units.quantity.Temperature

equals(Object) - Method in class ome.units.quantity.Time

equals(Object) - Method in class ome.xml.model.MapPair

equals(Object) - Method in class ome.xml.model.primitives.PrimitiveType

equals(TJScalingFactor) - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor

Returns true or false, depending on whether this instance and other have the same numerator and denominator.

equalsContents(Object) - Method in class loci.poi.hpsf.CustomProperty

Compares two custom properties for equality.

equalStrips - Variable in class loci.formats.in.MinimalTiffReader

equalStrips - Variable in class loci.formats.tiff.TiffParser

Equation - Class in mdbtools.dbengine.sql

Equation() - Constructor for class mdbtools.dbengine.sql.Equation

equation - Variable in class mdbtools.dbengine.sql.Join

ERFListener - Interface in loci.poi.hssf.eventmodel

An ERFListener is registered with the EventRecordFactory.

erode() - Method in class loci.plugins.util.RecordedImageProcessor

err - Variable in class jj2000.j2k.util.StreamMsgLogger

The 'err' stream

ERROR - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

error(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler

error(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler

error(TransformerException) - Method in class loci.common.xml.XMLTools.XMLListener

Error(String) - Method in class loci.poi.hssf.model.FormulaParser

Report an Error

ERROR - Static variable in class loci.poi.util.POILogger

ERROR_DIV_0 - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NA - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NAME - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NULL - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NUM - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_REF - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_VALUE - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

errors - Variable in class loci.common.xml.ValidationErrorHandler

ErrPtg - Class in loci.poi.hssf.record.formula

ErrPtg() - Constructor for class loci.poi.hssf.record.formula.ErrPtg

Creates new ErrPtg

ErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ErrPtg

ers - Variable in class jj2000.j2k.decoder.DecoderSpecs

The error resilience specifications concerning the entropy decoder

ERS_SEG_SYMBOLS - Static variable in interface jj2000.j2k.codestream.Markers

The "segmentation symbols used" flag within Sers: 2

ERS_SOP - Static variable in interface jj2000.j2k.codestream.Markers

The "SOP marker segments used" flag within Sers: 1

escapeXML(String) - Static method in class loci.common.xml.XMLTools

Escape special characters.

EscherAggregate - Class in loci.poi.hssf.record

This class is used to aggregate the MSODRAWING and OBJ record combinations.

EscherAggregate(DrawingManager2) - Constructor for class loci.poi.hssf.record.EscherAggregate

EscherArrayProperty - Class in loci.poi.ddf

Escher array properties are the most wierd construction ever invented with all sorts of special cases.

EscherArrayProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty

EscherArrayProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty

EscherBitmapBlip - Class in loci.poi.ddf

EscherBitmapBlip() - Constructor for class loci.poi.ddf.EscherBitmapBlip

EscherBlipRecord - Class in loci.poi.ddf

EscherBlipRecord() - Constructor for class loci.poi.ddf.EscherBlipRecord

EscherBlipWMFRecord - Class in loci.poi.ddf

The blip record is used to hold details about large binary objects that occur in escher such as JPEG, GIF, PICT and WMF files.

EscherBlipWMFRecord() - Constructor for class loci.poi.ddf.EscherBlipWMFRecord

EscherBoolProperty - Class in loci.poi.ddf

Represents a boolean property.

EscherBoolProperty(short, int) - Constructor for class loci.poi.ddf.EscherBoolProperty

Create an instance of an escher boolean property.

EscherBSERecord - Class in loci.poi.ddf

The BSE record is related closely to the EscherBlipRecord and stores extra information about the blip.

EscherBSERecord() - Constructor for class loci.poi.ddf.EscherBSERecord

escherBSERecords - Variable in class loci.poi.hssf.model.Workbook

EscherChildAnchorRecord - Class in loci.poi.ddf

The escher child achor record is used to specify the position of a shape under an existing group.

EscherChildAnchorRecord() - Constructor for class loci.poi.ddf.EscherChildAnchorRecord

EscherClientAnchorRecord - Class in loci.poi.ddf

The escher client anchor specifies which rows and cells the shape is bound to as well as the offsets within those cells.

EscherClientAnchorRecord() - Constructor for class loci.poi.ddf.EscherClientAnchorRecord

EscherClientDataRecord - Class in loci.poi.ddf

The EscherClientDataRecord is used to store client specific data about the position of a shape within a container.

EscherClientDataRecord() - Constructor for class loci.poi.ddf.EscherClientDataRecord

EscherComplexProperty - Class in loci.poi.ddf

A complex property differs from a simple property in that the data can not fit inside a 32 bit integer.

EscherComplexProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty

Create a complex property using the property id and a byte array containing the complex data value.

EscherComplexProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty

Create a complex property using the property number, a flag to indicate whether this is a blip reference and the complex property data.

EscherContainerRecord - Class in loci.poi.ddf

Escher container records store other escher records as children.

EscherContainerRecord() - Constructor for class loci.poi.ddf.EscherContainerRecord

EscherDggRecord - Class in loci.poi.ddf

This record defines the drawing groups used for a particular sheet.

EscherDggRecord() - Constructor for class loci.poi.ddf.EscherDggRecord

EscherDggRecord.FileIdCluster - Class in loci.poi.ddf

EscherDggRecord.FileIdCluster(int, int) - Constructor for class loci.poi.ddf.EscherDggRecord.FileIdCluster

EscherDgRecord - Class in loci.poi.ddf

This record simply holds the number of shapes in the drawing group and the last shape id used for this drawing group.

EscherDgRecord() - Constructor for class loci.poi.ddf.EscherDgRecord

EscherDump - Class in loci.poi.ddf

Used to dump the contents of escher records to a PrintStream.

EscherDump() - Constructor for class loci.poi.ddf.EscherDump

EscherGraphics - Class in loci.poi.hssf.usermodel

Translates Graphics calls into escher calls.

EscherGraphics(HSSFShapeGroup, HSSFWorkbook, Color, float) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics

Construct an escher graphics object.

EscherGraphics(HSSFShapeGroup, HSSFWorkbook, Color, Font, float) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics

Constructs an escher graphics object.

escherGraphics - Variable in class loci.poi.hssf.usermodel.EscherGraphics2d

EscherGraphics2d - Class in loci.poi.hssf.usermodel

Translates Graphics2d calls into escher calls.

EscherGraphics2d(EscherGraphics) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics2d

Constructs one escher graphics object from an escher graphics object.

escherGroup - Variable in class loci.poi.hssf.usermodel.EscherGraphics

EscherMetafileBlip - Class in loci.poi.ddf

EscherMetafileBlip() - Constructor for class loci.poi.ddf.EscherMetafileBlip

EscherOptRecord - Class in loci.poi.ddf

The opt record is used to store property values for a shape.

EscherOptRecord() - Constructor for class loci.poi.ddf.EscherOptRecord

EscherPictBlip - Class in loci.poi.ddf

EscherPictBlip() - Constructor for class loci.poi.ddf.EscherPictBlip

EscherProperties - Class in loci.poi.ddf

Provides a list of all known escher properties including the description and type.

EscherProperties() - Constructor for class loci.poi.ddf.EscherProperties

EscherProperty - Class in loci.poi.ddf

This is the abstract base class for all escher properties.

EscherProperty(short) - Constructor for class loci.poi.ddf.EscherProperty

The id is distinct from the actual property number.

EscherProperty(short, boolean, boolean) - Constructor for class loci.poi.ddf.EscherProperty

Constructs a new escher property.

EscherPropertyFactory - Class in loci.poi.ddf

Generates a property given a reference into the byte array storing that property.

EscherPropertyFactory() - Constructor for class loci.poi.ddf.EscherPropertyFactory

EscherPropertyMetaData - Class in loci.poi.ddf

This class stores the type and description of an escher property.

EscherPropertyMetaData(String) - Constructor for class loci.poi.ddf.EscherPropertyMetaData

EscherPropertyMetaData(String, byte) - Constructor for class loci.poi.ddf.EscherPropertyMetaData

EscherRecord - Class in loci.poi.ddf

The base abstract record from which all escher records are defined.

EscherRecord() - Constructor for class loci.poi.ddf.EscherRecord

Create a new instance

EscherRecord.EscherRecordHeader - Class in loci.poi.ddf

This class reads the standard escher header.

EscherRecord.EscherRecordHeader() - Constructor for class loci.poi.ddf.EscherRecord.EscherRecordHeader

escherRecordClasses - Static variable in class loci.poi.ddf.DefaultEscherRecordFactory

EscherRecordFactory - Interface in loci.poi.ddf

The escher record factory interface allows for the creation of escher records from a pointer into a data array.

escherRecords - Variable in class loci.poi.hssf.record.AbstractEscherHolderRecord

EscherRGBProperty - Class in loci.poi.ddf

A color property.

EscherRGBProperty(short, int) - Constructor for class loci.poi.ddf.EscherRGBProperty

EscherSerializationListener - Interface in loci.poi.ddf

Interface for listening to escher serialization events.

EscherShapePathProperty - Class in loci.poi.ddf

Defines the constants for the various possible shape paths.

EscherShapePathProperty(short, int) - Constructor for class loci.poi.ddf.EscherShapePathProperty

EscherSimpleProperty - Class in loci.poi.ddf

A simple property is of fixed length and as a property number in addition to a 32-bit value.

EscherSimpleProperty(short, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty

The id is distinct from the actual property number.

EscherSimpleProperty(short, boolean, boolean, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty

Constructs a new escher property.

EscherSpgrRecord - Class in loci.poi.ddf

The spgr record defines information about a shape group.

EscherSpgrRecord() - Constructor for class loci.poi.ddf.EscherSpgrRecord

EscherSplitMenuColorsRecord - Class in loci.poi.ddf

A list of the most recently used colours for the drawings contained in this document.

EscherSplitMenuColorsRecord() - Constructor for class loci.poi.ddf.EscherSplitMenuColorsRecord

EscherSpRecord - Class in loci.poi.ddf

Together the the EscherOptRecord this record defines some of the basic properties of a shape.

EscherSpRecord() - Constructor for class loci.poi.ddf.EscherSpRecord

escherTextbox - Variable in class loci.poi.hssf.model.TextboxShape

EscherTextboxRecord - Class in loci.poi.ddf

Holds data from the parent application.

EscherTextboxRecord() - Constructor for class loci.poi.ddf.EscherTextboxRecord

estimateLayerThreshold(int, EBCOTLayer) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

This function attempts to estimate a rate-distortion slope threshold which will achieve a target number of code bytes close the `targetBytes' value.

evalFile(String) - Method in class loci.formats.in.ZeissTIFFReader

Evaluate the metadata of a TIFF/XML file collection, and return this to the user.

EventRecordFactory - Class in loci.poi.hssf.eventmodel

Event-based record factory.

EventRecordFactory() - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory

Construct an abortable EventRecordFactory.

EventRecordFactory(boolean) - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory

Create an EventRecordFactory

EXA(Unit<T>) - Static method in class ome.units.UNITS

EXAHZ - Static variable in class ome.units.UNITS

EXAM - Static variable in class ome.units.UNITS

EXAPA - Static variable in class ome.units.UNITS

EXAS - Static variable in class ome.units.UNITS

EXAV - Static variable in class ome.units.UNITS

EXAW - Static variable in class ome.units.UNITS

ExcelExtractor - Class in loci.poi.hssf.extractor

A text extractor for Excel files.

ExcelExtractor(HSSFWorkbook) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor

ExcelExtractor(POIFSFileSystem) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor

excitation - Variable in class loci.formats.in.FlexReader.FilterGroup

excitation - Variable in class loci.formats.in.ZeissCZIReader.Channel

EXCITATION_WAVELENGTH - Static variable in class loci.tests.testng.Configuration

EXCITATION_WAVELENGTH_UNIT - Static variable in class loci.tests.testng.Configuration

excitationFilter - Variable in class loci.formats.in.FV1000Reader.ChannelData

excitationFilterLinks - Variable in class ome.xml.model.FilterSet

excitationFilterLinks - Variable in class ome.xml.model.LightPath

ExcitationFilterRef - Class in ome.xml.model

ExcitationFilterRef() - Constructor for class ome.xml.model.ExcitationFilterRef

Default constructor.

ExcitationFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExcitationFilterRef

Constructs ExcitationFilterRef recursively from an XML DOM tree.

ExcitationFilterRef(ExcitationFilterRef) - Constructor for class ome.xml.model.ExcitationFilterRef

Copy constructor.

excitationWavelength - Variable in class loci.formats.in.SVSReader

excitationWavelength - Variable in class ome.xml.model.Channel

exclude - Variable in class loci.formats.in.InCellReader

exec(String) - Method in class loci.common.ReflectedUniverse

Deprecated.

Executes a command in the universe.

execute() - Method in class loci.plugins.in.ImportProcess

Performs the import preparation process, notifying status listeners at each step.

execute(SQL) - Method in class mdbtools.dbengine.Engine

execute is used to tell the engine to do something

execute(Select) - Method in class mdbtools.dbengine.Engine

Execute a sql select query

execute(Object) - Method in interface mdbtools.dbengine.functions.Aggregate

execute(Object) - Method in class mdbtools.dbengine.functions.ConCat

take two strings stick them together and return the result

execute(Object) - Method in class mdbtools.dbengine.functions.Count

execute(Object) - Method in interface mdbtools.dbengine.functions.Function

given the data for a column execute the function

execute(Object) - Method in class mdbtools.dbengine.functions.Length

execute the length function of a string

execute(Object) - Method in class mdbtools.dbengine.functions.Lower

convert column to lowercase

execute(Object) - Method in class mdbtools.dbengine.functions.Max

execute(Object) - Method in class mdbtools.dbengine.functions.Min

execute(Object) - Method in class mdbtools.dbengine.functions.Sum

execute(Object) - Method in class mdbtools.dbengine.functions.Upper

convert column to uppercase

execute() - Method in class mdbtools.dbengine.SelectEngine

EXECUTIVE_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

EXIF - Static variable in class loci.formats.tiff.IFD

EXIF_JPEG_COMPRESSION_TYPE - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

EXIF_VERSION - Static variable in class loci.formats.tiff.IFD

EXIF_VERSION_2_1 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

An array of bytes containing the values {'0', '2', '1', '0'} to be used with the "EXIFVersion" tag to indicate EXIF version 2.1.

EXIF_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

An array of bytes containing the values {'0', '2', '2', '0'} to be used with the "EXIFVersion" tag to indicate EXIF version 2.2.

EXIFGPSTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF GPS Info IFD.

EXIFGPSTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

EXIFGPSTagSet.GPSAltitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSAltitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSAltitude

EXIFGPSTagSet.GPSAltitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSAltitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSAltitudeRef

EXIFGPSTagSet.GPSAreaInformation - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSAreaInformation() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSAreaInformation

EXIFGPSTagSet.GPSDateStamp - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDateStamp() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDateStamp

EXIFGPSTagSet.GPSDestBearing - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestBearing() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestBearing

EXIFGPSTagSet.GPSDestBearingRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestBearingRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestBearingRef

EXIFGPSTagSet.GPSDestDistance - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestDistance() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestDistance

EXIFGPSTagSet.GPSDestDistanceRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestDistanceRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestDistanceRef

EXIFGPSTagSet.GPSDestLatitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestLatitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLatitude

EXIFGPSTagSet.GPSDestLatitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestLatitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLatitudeRef

EXIFGPSTagSet.GPSDestLongitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestLongitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLongitude

EXIFGPSTagSet.GPSDestLongitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestLongitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLongitudeRef

EXIFGPSTagSet.GPSDifferential - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDifferential() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDifferential

EXIFGPSTagSet.GPSDOP - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDOP() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDOP

EXIFGPSTagSet.GPSImgDirection - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSImgDirection() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSImgDirection

EXIFGPSTagSet.GPSImgDirectionRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSImgDirectionRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSImgDirectionRef

EXIFGPSTagSet.GPSLatitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSLatitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLatitude

EXIFGPSTagSet.GPSLatitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSLatitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLatitudeRef

EXIFGPSTagSet.GPSLongitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSLongitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLongitude

EXIFGPSTagSet.GPSLongitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSLongitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLongitudeRef

EXIFGPSTagSet.GPSMapDatum - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSMapDatum() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSMapDatum

EXIFGPSTagSet.GPSMeasureMode - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSMeasureMode() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSMeasureMode

EXIFGPSTagSet.GPSProcessingMethod - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSProcessingMethod() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSProcessingMethod

EXIFGPSTagSet.GPSSatellites - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSSatellites() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSSatellites

EXIFGPSTagSet.GPSSpeed - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSSpeed() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSSpeed

EXIFGPSTagSet.GPSSpeedRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSSpeedRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSSpeedRef

EXIFGPSTagSet.GPSStatus - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSStatus() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSStatus

EXIFGPSTagSet.GPSTimeStamp - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSTimeStamp() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSTimeStamp

EXIFGPSTagSet.GPSTrack - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSTrack() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSTrack

EXIFGPSTagSet.GPSTrackRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSTrackRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSTrackRef

EXIFGPSTagSet.GPSVersionID - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSVersionID() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSVersionID

EXIFInteroperabilityTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF Interoperability IFD.

EXIFInteroperabilityTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

EXIFInteroperabilityTagSet.InteroperabilityIndex - Class in com.sun.media.imageio.plugins.tiff

EXIFInteroperabilityTagSet.InteroperabilityIndex() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet.InteroperabilityIndex

EXIFParentTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class containing the TIFF tags used to reference the EXIF and GPS IFDs.

EXIFParentTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

EXIFParentTIFFTagSet.EXIFIFDPointer - Class in com.sun.media.imageio.plugins.tiff

EXIFParentTIFFTagSet.EXIFIFDPointer() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet.EXIFIFDPointer

EXIFParentTIFFTagSet.GPSInfoIFDPointer - Class in com.sun.media.imageio.plugins.tiff

EXIFParentTIFFTagSet.GPSInfoIFDPointer() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet.GPSInfoIFDPointer

EXIFService - Interface in loci.formats.services

EXIFServiceImpl - Class in loci.formats.services

EXIFServiceImpl() - Constructor for class loci.formats.services.EXIFServiceImpl

EXIFTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF IFD.

EXIFTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

EXIFTIFFTagSet.ApertureValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ApertureValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ApertureValue

EXIFTIFFTagSet.BrightnessValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.BrightnessValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.BrightnessValue

EXIFTIFFTagSet.CFAPattern - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.CFAPattern() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.CFAPattern

EXIFTIFFTagSet.ColorSpace - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ColorSpace() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ColorSpace

EXIFTIFFTagSet.ComponentsConfiguration - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ComponentsConfiguration() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ComponentsConfiguration

EXIFTIFFTagSet.CompressedBitsPerPixel - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.CompressedBitsPerPixel() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.CompressedBitsPerPixel

EXIFTIFFTagSet.Contrast - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.Contrast() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Contrast

EXIFTIFFTagSet.CustomRendered - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.CustomRendered() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.CustomRendered

EXIFTIFFTagSet.DateTimeDigitized - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.DateTimeDigitized() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.DateTimeDigitized

EXIFTIFFTagSet.DateTimeOriginal - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.DateTimeOriginal() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.DateTimeOriginal

EXIFTIFFTagSet.DeviceSettingDescription - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.DeviceSettingDescription() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.DeviceSettingDescription

EXIFTIFFTagSet.DigitalZoomRatio - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.DigitalZoomRatio() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.DigitalZoomRatio

EXIFTIFFTagSet.EXIFVersion - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.EXIFVersion() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.EXIFVersion

EXIFTIFFTagSet.ExposureBiasValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureBiasValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureBiasValue

EXIFTIFFTagSet.ExposureIndex - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureIndex() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureIndex

EXIFTIFFTagSet.ExposureMode - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureMode() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureMode

EXIFTIFFTagSet.ExposureProgram - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureProgram() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureProgram

EXIFTIFFTagSet.ExposureTime - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureTime() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureTime

EXIFTIFFTagSet.FileSource - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FileSource() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FileSource

EXIFTIFFTagSet.Flash - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.Flash() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Flash

EXIFTIFFTagSet.FlashEnergy - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FlashEnergy() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FlashEnergy

EXIFTIFFTagSet.FlashPixVersion - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FlashPixVersion() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FlashPixVersion

EXIFTIFFTagSet.FNumber - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FNumber() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FNumber

EXIFTIFFTagSet.FocalLength - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalLength() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalLength

EXIFTIFFTagSet.FocalLengthIn35mmFilm - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalLengthIn35mmFilm() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalLengthIn35mmFilm

EXIFTIFFTagSet.FocalPlaneResolutionUnit - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalPlaneResolutionUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalPlaneResolutionUnit

EXIFTIFFTagSet.FocalPlaneXResolution - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalPlaneXResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalPlaneXResolution

EXIFTIFFTagSet.FocalPlaneYResolution - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalPlaneYResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalPlaneYResolution

EXIFTIFFTagSet.GainControl - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.GainControl() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.GainControl

EXIFTIFFTagSet.ImageUniqueID - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ImageUniqueID() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ImageUniqueID

EXIFTIFFTagSet.InteroperabilityIFD - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.InteroperabilityIFD() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.InteroperabilityIFD

EXIFTIFFTagSet.ISOSpeedRatings - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ISOSpeedRatings() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ISOSpeedRatings

EXIFTIFFTagSet.LightSource - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.LightSource() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.LightSource

EXIFTIFFTagSet.MakerNote - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.MakerNote() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.MakerNote

EXIFTIFFTagSet.MaxApertureValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.MaxApertureValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.MaxApertureValue

EXIFTIFFTagSet.MeteringMode - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.MeteringMode() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.MeteringMode

EXIFTIFFTagSet.OECF - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.OECF() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.OECF

EXIFTIFFTagSet.PixelXDimension - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.PixelXDimension() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.PixelXDimension

EXIFTIFFTagSet.PixelYDimension - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.PixelYDimension() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.PixelYDimension

EXIFTIFFTagSet.RelatedSoundFile - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.RelatedSoundFile() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.RelatedSoundFile

EXIFTIFFTagSet.Saturation - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.Saturation() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Saturation

EXIFTIFFTagSet.SceneCaptureType - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SceneCaptureType() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SceneCaptureType

EXIFTIFFTagSet.SceneType - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SceneType() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SceneType

EXIFTIFFTagSet.SensingMethod - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SensingMethod() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SensingMethod

EXIFTIFFTagSet.Sharpness - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.Sharpness() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Sharpness

EXIFTIFFTagSet.ShutterSpeedValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ShutterSpeedValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ShutterSpeedValue

EXIFTIFFTagSet.SpatialFrequencyResponse - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SpatialFrequencyResponse() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SpatialFrequencyResponse

EXIFTIFFTagSet.SpectralSensitivity - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SpectralSensitivity() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SpectralSensitivity

EXIFTIFFTagSet.SubjectArea - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubjectArea() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectArea

EXIFTIFFTagSet.SubjectDistance - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubjectDistance() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectDistance

EXIFTIFFTagSet.SubjectDistanceRange - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubjectDistanceRange() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectDistanceRange

EXIFTIFFTagSet.SubjectLocation - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubjectLocation() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectLocation

EXIFTIFFTagSet.SubSecTime - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubSecTime() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubSecTime

EXIFTIFFTagSet.SubSecTimeDigitized - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubSecTimeDigitized() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubSecTimeDigitized

EXIFTIFFTagSet.SubSecTimeOriginal - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubSecTimeOriginal() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubSecTimeOriginal

EXIFTIFFTagSet.UserComment - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.UserComment() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.UserComment

EXIFTIFFTagSet.WhiteBalance - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.WhiteBalance() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.WhiteBalance

exists() - Method in class loci.common.Location

Returns whether or not the pathname exists.

exists - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane

Whether or not the file meant to contain this plane exists.

exists(String) - Method in interface loci.formats.services.JHDFService

Checks if path in HDF5 file exists.

exists(String) - Method in class loci.formats.services.JHDFServiceImpl

exit() - Method in class loci.formats.tools.EditTiffG

exp - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

The quantization step "exponent" value, for each resolution level and subband, as it appears in the codestream.

EXP - Static variable in class loci.formats.codec.LosslessJPEGCodec

exp() - Method in class loci.plugins.util.RecordedImageProcessor

expandCode(byte[], int, short, int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

If expanded data doesnt fit into array only what will fit is written to buf and the return value indicates how much of the expanded code has been written to the buf.

expandColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

expandPixels(int, byte[], byte[], int) - Method in class loci.formats.in.PictReader

Expand an array of bytes.

expandRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

EXPANSION_TABLE - Static variable in class loci.formats.in.PictReader

Table used in expanding pixels that use less than 8 bits.

expBias - Variable in class ome.jxr.parser.DatastreamParser

Expected(String) - Method in class loci.poi.hssf.model.FormulaParser

Report What Was Expected

EXPERIMENT - Static variable in class loci.formats.in.LeicaReader

Experiment - Class in ome.xml.model

Experiment() - Constructor for class ome.xml.model.Experiment

Default constructor.

Experiment(Element, OMEModel) - Constructor for class ome.xml.model.Experiment

Constructs Experiment recursively from an XML DOM tree.

Experiment(Experiment) - Constructor for class ome.xml.model.Experiment

Copy constructor.

experiment - Variable in class ome.xml.model.Image

experiment - Variable in class ome.xml.model.MicrobeamManipulation

EXPERIMENT_FILE - Static variable in class loci.formats.in.BDReader

EXPERIMENT_FILE - Static variable in class loci.formats.in.ScanrReader

EXPERIMENT_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of a microscope.

experimenter - Variable in class ome.xml.model.Dataset

experimenter - Variable in class ome.xml.model.Experiment

Experimenter - Class in ome.xml.model

Experimenter() - Constructor for class ome.xml.model.Experimenter

Default constructor.

Experimenter(Element, OMEModel) - Constructor for class ome.xml.model.Experimenter

Constructs Experimenter recursively from an XML DOM tree.

Experimenter(Experimenter) - Constructor for class ome.xml.model.Experimenter

Copy constructor.

experimenter - Variable in class ome.xml.model.Image

experimenter - Variable in class ome.xml.model.MicrobeamManipulation

experimenter - Variable in class ome.xml.model.Project

experimenterGroup - Variable in class ome.xml.model.Dataset

ExperimenterGroup - Class in ome.xml.model

ExperimenterGroup() - Constructor for class ome.xml.model.ExperimenterGroup

Default constructor.

ExperimenterGroup(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroup

Constructs ExperimenterGroup recursively from an XML DOM tree.

ExperimenterGroup(ExperimenterGroup) - Constructor for class ome.xml.model.ExperimenterGroup

Copy constructor.

experimenterGroup - Variable in class ome.xml.model.Image

experimenterGroup - Variable in class ome.xml.model.Project

experimenterGroupLinks - Variable in class ome.xml.model.Annotation

experimenterGroupLinks - Variable in class ome.xml.model.Experimenter

ExperimenterGroupRef - Class in ome.xml.model

ExperimenterGroupRef() - Constructor for class ome.xml.model.ExperimenterGroupRef

Default constructor.

ExperimenterGroupRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroupRef

Constructs ExperimenterGroupRef recursively from an XML DOM tree.

ExperimenterGroupRef(ExperimenterGroupRef) - Constructor for class ome.xml.model.ExperimenterGroupRef

Copy constructor.

experimenterGroups - Variable in class ome.xml.model.Leader

experimenterGroups - Variable in class ome.xml.model.OME

experimenterLinks - Variable in class ome.xml.model.Annotation

experimenterLinks - Variable in class ome.xml.model.ExperimenterGroup

experimenterName - Variable in class loci.formats.in.ImaconReader

ExperimenterRef - Class in ome.xml.model

ExperimenterRef() - Constructor for class ome.xml.model.ExperimenterRef

Default constructor.

ExperimenterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterRef

Constructs ExperimenterRef recursively from an XML DOM tree.

ExperimenterRef(ExperimenterRef) - Constructor for class ome.xml.model.ExperimenterRef

Copy constructor.

experimenters - Variable in class ome.xml.model.OME

ExperimentRef - Class in ome.xml.model

ExperimentRef() - Constructor for class ome.xml.model.ExperimentRef

Default constructor.

ExperimentRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimentRef

Constructs ExperimentRef recursively from an XML DOM tree.

ExperimentRef(ExperimentRef) - Constructor for class ome.xml.model.ExperimentRef

Copy constructor.

experiments - Variable in class ome.xml.model.Experimenter

experiments - Variable in class ome.xml.model.OME

ExperimentType - Enum in ome.xml.model.enums

ExperimentType(String) - Constructor for enum ome.xml.model.enums.ExperimentType

ExperimentTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ExperimentType.

ExperimentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

expH - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

EXPIRED_QT_MSG - Static variable in class loci.formats.gui.LegacyQTTools

expiredQT - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating QuickTime for Java has expired.

explode() - Method in class loci.formats.FilePatternBlock

exporter - Variable in class loci.plugins.LociExporter

Exporter - Class in loci.plugins.out

Core logic for the Bio-Formats Exporter ImageJ plugin.

Exporter(LociExporter, ImagePlus) - Constructor for class loci.plugins.out.Exporter

exposure - Variable in class loci.formats.in.BDReader

exposure - Variable in class loci.formats.in.InCellReader.Image

exposure - Variable in class loci.formats.in.InCellReader.InCellHandler

exposure - Variable in class loci.formats.in.ZeissCZIReader.Channel

EXPOSURE_BIAS_VALUE - Static variable in class loci.formats.tiff.IFD

EXPOSURE_INDEX - Static variable in class loci.formats.tiff.IFD

EXPOSURE_METERING_MODE - Static variable in class loci.formats.in.CellSensReader

EXPOSURE_MODE - Static variable in class loci.formats.tiff.IFD

EXPOSURE_MODE_AUTO_BRACKET - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_MODE_AUTO_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_MODE_MANUAL_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_PROGRAM - Static variable in class loci.formats.tiff.IFD

EXPOSURE_PROGRAM_ACTION_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_APERTURE_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_CREATIVE_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_LANDSCAPE_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_MANUAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_MAX_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_NORMAL_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_NOT_DEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_PORTRAIT_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_SHUTTER_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_TIME - Static variable in class loci.formats.in.CellSensReader

EXPOSURE_TIME - Static variable in class loci.formats.in.FluoviewReader

EXPOSURE_TIME - Static variable in class loci.formats.tiff.IFD

EXIF tags.

EXPOSURE_TIME - Static variable in class loci.tests.testng.Configuration

EXPOSURE_TIME_UNIT - Static variable in class loci.tests.testng.Configuration

exposures - Variable in class loci.formats.in.MetamorphHandler

exposures - Variable in class loci.formats.in.ScanrReader

exposureScale - Variable in class loci.formats.in.SVSReader

exposureTime - Variable in class loci.formats.in.BaseZeissReader

exposureTime - Variable in class loci.formats.in.BioRadSCNReader

exposureTime - Variable in class loci.formats.in.FakeReader

exposure time per plane info

exposureTime - Variable in class loci.formats.in.FluoviewReader

exposureTime - Variable in class loci.formats.in.IvisionReader

exposureTime - Variable in class loci.formats.in.LeicaReader

exposureTime - Variable in class loci.formats.in.LiFlimReader

exposureTime - Variable in class loci.formats.in.MetamorphReader

exposureTime - Variable in class loci.formats.in.MicromanagerReader.Position

exposureTime - Variable in class loci.formats.in.NativeND2Reader

exposureTime - Variable in class loci.formats.in.ND2Handler

exposureTime - Variable in class loci.formats.in.SVSReader

exposureTime - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

exposureTime - Variable in class ome.xml.model.Plane

exposureTimes - Variable in class loci.formats.in.CellSensReader.Pyramid

exposureTimes - Variable in class loci.formats.in.SimplePCITiffReader

exposureTimes - Variable in class loci.formats.in.TillVisionReader

ExpPtg - Class in loci.poi.hssf.record.formula

ExpPtg() - Constructor for class loci.poi.hssf.record.formula.ExpPtg

Creates new ExpPtg

ExpPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ExpPtg

Creates new ExpPtg

Expression() - Method in class loci.poi.hssf.model.FormulaParser

Parse and Translate an Expression

expTime - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Exposure time in seconds.

expTimes - Variable in class loci.formats.in.LIFReader

expV - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

extBit - Static variable in class loci.poi.hssf.record.UnicodeString

extCount - Variable in class loci.formats.in.PerkinElmerReader

ExtendedFormatRecord - Class in loci.poi.hssf.record

Title: Extended Format Record Description: Probably one of the more complex records.

ExtendedFormatRecord() - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord

Constructor ExtendedFormatRecord

ExtendedFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord

Constructs an ExtendedFormat record and sets its fields appropriately.

EXTENSION - Static variable in class loci.formats.in.GIFReader

ExtensionFileFilter - Class in loci.formats.gui

A file filter based on file extensions, for use with a JFileChooser.

ExtensionFileFilter(String, String) - Constructor for class loci.formats.gui.ExtensionFileFilter

Constructs a new filter that accepts the given extension.

ExtensionFileFilter(String[], String) - Constructor for class loci.formats.gui.ExtensionFileFilter

Constructs a new filter that accepts the given extensions.

extensions - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

extensions - Variable in class loci.plugins.config.ConfigWindow

extensions - Variable in class loci.plugins.macro.MacroFunctions

external - Variable in class ome.xml.model.BinaryFile

External - Class in ome.xml.model

External() - Constructor for class ome.xml.model.External

Default constructor.

External(Element, OMEModel) - Constructor for class ome.xml.model.External

Constructs External recursively from an XML DOM tree.

External(External) - Constructor for class ome.xml.model.External

Copy constructor.

EXTERNAL_DATA_VOLUME - Static variable in class loci.formats.in.CellSensReader

EXTERNAL_FILE_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

externalDescription - Variable in class ome.xml.model.Well

externalIdentifier - Variable in class ome.xml.model.Plate

externalIdentifier - Variable in class ome.xml.model.Well

externals - Variable in class loci.formats.FileStitcher

externSheet - Variable in class loci.poi.hssf.model.Workbook

Holds the Extern Sheet with references to bound sheets

externsheetPos - Variable in class loci.poi.hssf.model.WorkbookRecordList

ExternSheetRecord - Class in loci.poi.hssf.record

Title: Extern Sheet

ExternSheetRecord() - Constructor for class loci.poi.hssf.record.ExternSheetRecord

ExternSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetRecord

Constructs a Extern Sheet record and sets its fields appropriately.

ExternSheetSubRecord - Class in loci.poi.hssf.record

Title: A sub Record for Extern Sheet

ExternSheetSubRecord() - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord

a Constractor for making new sub record

ExternSheetSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord

Constructs a Extern Sheet Sub Record record and sets its fields appropriately.

extHdrFields - Variable in class loci.formats.in.DeltavisionReader

Initialize an array of Extended Header Field structures.

extHeaderSize - Variable in class loci.formats.in.MRCReader

Size of extended header

extIndex - Variable in class loci.formats.in.PerkinElmerReader.PixelsFile

EXTRA_IMAGES - Static variable in class loci.formats.in.AFIReader

EXTRA_SAMPLES - Static variable in class loci.formats.in.CellSensReader

EXTRA_SAMPLES - Static variable in class loci.formats.tiff.IFD

EXTRA_SAMPLES_ASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

EXTRA_SAMPLES_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

EXTRA_SAMPLES_UNASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

EXTRA_SAMPLES_UNSPECIFIED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

extract(ListManagedBlock[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

create a list of SmallDocumentBlock's from raw data

extractCoreMetaData() - Method in class loci.formats.tools.AmiraParameters

extractMainMarkSeg(short, RandomAccessIO) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

This method extract a marker segment from the main header and stores it into a byte buffer for the second pass.

extractText(byte[]) - Static method in class mdbtools.libmdb.Util

extractTilePartMarkSeg(short, RandomAccessIO, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

This method extracts a marker segment in a tile-part header and stores it into a byte buffer for the second pass.

extractTokensFromFakeSeries(String) - Method in class loci.formats.in.FakeReader

extraFiles - Variable in class loci.formats.in.VolocityReader

extraLength - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

extralyrs - Variable in class jj2000.j2k.entropy.encoder.LayersInfo

The number of extra layers to be added after an optimized layer.

extras - Variable in class loci.formats.in.LeicaHandler

extraSamples - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the ExtraSamples tag.

extraSamples - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

exts - Variable in class loci.formats.gui.ExtensionFileFilter

List of valid extensions.

extSize - Variable in class loci.formats.in.DeltavisionReader

Size of extended header.

ExtSSTInfoSubRecord - Class in loci.poi.hssf.record

Extended SST table info subrecord

ExtSSTInfoSubRecord() - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord

Creates new ExtSSTInfoSubRecord

ExtSSTInfoSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord

ExtSSTRecord - Class in loci.poi.hssf.record

Title: Extended Static String Table

ExtSSTRecord() - Constructor for class loci.poi.hssf.record.ExtSSTRecord

ExtSSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTRecord

Constructs a EOFRecord record and sets its fields appropriately.

exWave - Variable in class loci.formats.in.BDReader

exWave - Variable in class loci.formats.in.FV1000Reader.ChannelData

exWave - Variable in class loci.formats.in.ImarisHDFReader

exWave - Variable in class loci.formats.in.LeicaHandler.Channel

exWave - Variable in class loci.formats.in.ND2Handler

exWave - Variable in class loci.formats.in.NikonTiffReader

exWavelen - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Excitation filter wavelength.

exWavelength - Variable in class loci.formats.in.BaseZeissReader

exWavelength - Variable in class loci.formats.in.OperettaReader.Plane

exWaves - Variable in class loci.formats.in.InCellReader

exWaves - Variable in class loci.formats.in.LeicaReader

exWaves - Variable in class loci.formats.in.LIFReader

F

f - Variable in class mdbtools.libmdb.MdbHandle

F_KEY - Static variable in class loci.formats.in.LiFlimReader

F_NUMBER - Static variable in class loci.formats.tiff.IFD

FacilityManager - Class in jj2000.j2k.util

This class manages common facilities for mutithreading environments, It can register different facilities for each thread, and also a default one, so that they can be referred by static methods, while possibly having different ones for different threads.

FacilityManager() - Constructor for class jj2000.j2k.util.FacilityManager

factor - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

Factor() - Method in class loci.poi.hssf.model.FormulaParser

Parse and Translate a Math Factor

factors - Variable in class loci.formats.in.FlexReader.FlexFile

factors - Variable in class loci.formats.in.FlexReader.FlexHandler

FACTORY - Static variable in class loci.common.xml.XMLTools

factory - Variable in class loci.formats.FormatReader

failureClass - Variable in exception loci.common.services.DependencyException

The class that was used in a failed instantiation.

FAKE_EXT - Static variable in class loci.formats.ResourceNamer

fakeBigTiff - Variable in class loci.formats.tiff.TiffParser

Whether or not 64-bit offsets are used for non-BigTIFF files.

FakeImage - Class in loci.formats.tools

Generates fake image structures.

FakeImage(Location) - Constructor for class loci.formats.tools.FakeImage

FakeReader - Class in loci.formats.in

FakeReader is the file format reader for faking input data.

FakeReader() - Constructor for class loci.formats.in.FakeReader

Constructs a new fake reader.

fakeSeries - Variable in class loci.formats.in.FakeReader

List of used files if the fake is a SPW structure

FALSE - Static variable in class loci.poi.hssf.record.UseSelFSRecord

falseColor - Variable in class loci.formats.CoreMetadata

Indicates whether or not we can ignore the color map (if present).

FAN_SPEED - Static variable in class loci.formats.in.CellSensReader

fastCodeSymbols(int, int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This method performs the coding of the symbol 'bit', using context 'ctxt', 'n' times, using the MQ-coder speedup mode if possible.

fastDecodeSymbols(int[], int, int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Decodes 'n' symbols from the bit stream using the same context 'ctxt'.

fatal(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

fatal(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

fatal(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

fatal(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

FATAL - Static variable in class loci.poi.util.POILogger

fatalError(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler

fatalError(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler

fatalError(TransformerException) - Method in class loci.common.xml.XMLTools.XMLListener

FaxTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the extra tags found in a TIFF-F (RFC 2036) file.

FaxTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

FaxTIFFTagSet.BadFaxLines - Class in com.sun.media.imageio.plugins.tiff

FaxTIFFTagSet.BadFaxLines() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet.BadFaxLines

FaxTIFFTagSet.CleanFaxData - Class in com.sun.media.imageio.plugins.tiff

FaxTIFFTagSet.CleanFaxData() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet.CleanFaxData

FaxTIFFTagSet.ConsecutiveBadFaxLines - Class in com.sun.media.imageio.plugins.tiff

FaxTIFFTagSet.ConsecutiveBadFaxLines() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet.ConsecutiveBadFaxLines

fb - Variable in class loci.formats.in.BaseZeissReader.Shape

fcc - Variable in class loci.formats.in.AVIReader

FCS_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created in FIFO mode (setup, data blocks = Decay, FCS, FIDA, FILDA & MCS curves for each used routing channel).

fcsDecayCalc - Variable in class loci.formats.in.SDTInfo

Bit 0 = 1 - decay curve calculated.

fcsPoints - Variable in class loci.formats.in.SDTInfo

No of FCS values.

fcsType - Variable in class loci.formats.in.SDTInfo

0 - linear FCS with log binning (100 bins/log) when bit 15 = 1 (0x8000) - Multi-Tau FCS where bits 14-0 = ktau parameter.

fctlCount - Variable in class loci.formats.in.APNGReader.PNGInputStream

FD - Static variable in class loci.formats.in.DicomReader

fd - Variable in class mdbtools.libmdb.MdbFile

fdatValid - Variable in class loci.formats.in.APNGReader.PNGInputStream

FEATURE - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

FEI_MAGIC_STRING - Static variable in class loci.formats.in.FEIReader

FEIReader - Class in loci.formats.in

FEIReader is the file format reader for FEI and Philips .img files.

FEIReader() - Constructor for class loci.formats.in.FEIReader

Constructs a new FEI reader.

FEITiffReader - Class in loci.formats.in

FEITiffReader is the file format reader for TIFF files produced by various FEI software.

FEITiffReader() - Constructor for class loci.formats.in.FEITiffReader

FEITiffReader.FEIHandler - Class in loci.formats.in

FEITiffReader.FEIHandler() - Constructor for class loci.formats.in.FEITiffReader.FEIHandler

FEMTO(Unit<T>) - Static method in class ome.units.UNITS

fetchBlocks(int, BlockList) - Method in class loci.poi.poifs.storage.BlockAllocationTableReader

walk the entries from a specified point and return the associated blocks.

fetchBlocks(int) - Method in interface loci.poi.poifs.storage.BlockList

get the blocks making up a particular stream in the list.

fetchBlocks(int) - Method in class loci.poi.poifs.storage.BlockListImpl

get the blocks making up a particular stream in the list.

fetchRow(MdbTableDef) - Method in class loci.formats.services.MDBServiceImpl

Fetches the next row from the table, ignoring potential parsing exceptions.

ff - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

fHighByte - Variable in class loci.poi.hssf.record.formula.StringPtg

fHighByte - Variable in class loci.poi.hssf.record.StyleRecord

FHZ - Static variable in class ome.units.UNITS

fidaPoints - Variable in class loci.formats.in.SDTInfo

No of FIDA values.

fidaTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for FIDA histogram.

field - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

field - Variable in class loci.formats.in.FlexReader.FlexFile

field - Variable in class loci.formats.in.OperettaReader.Plane

FIELD - Static variable in class loci.formats.ResourceNamer

field1_x_position - Variable in class loci.poi.hssf.record.ChartFormatRecord

field2_y_position - Variable in class loci.poi.hssf.record.ChartFormatRecord

field3_width - Variable in class loci.poi.hssf.record.ChartFormatRecord

field4_height - Variable in class loci.poi.hssf.record.ChartFormatRecord

field5_grbit - Variable in class loci.poi.hssf.record.ChartFormatRecord

field_10_compressionFlag - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_10_font_name_len - Variable in class loci.poi.hssf.record.FontRecord

field_10_footermargin - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_10_indexOfColorValue - Variable in class loci.poi.hssf.record.TextRecord

field_10_length_status_bar_text - Variable in class loci.poi.hssf.record.NameRecord

field_10_options - Variable in class loci.poi.hssf.record.TickRecord

field_10_unused2 - Variable in class loci.poi.ddf.EscherBSERecord

field_11_compressed_unicode_flag - Variable in class loci.poi.hssf.record.NameRecord

field_11_copies - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_11_filter - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_11_font_name - Variable in class loci.poi.hssf.record.FontRecord

field_11_options2 - Variable in class loci.poi.hssf.record.TextRecord

field_11_tickColor - Variable in class loci.poi.hssf.record.TickRecord

field_11_unused3 - Variable in class loci.poi.ddf.EscherBSERecord

field_12_blipRecord - Variable in class loci.poi.ddf.EscherBSERecord

field_12_builtIn_name - Variable in class loci.poi.hssf.record.NameRecord

field_12_data - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_12_name_text - Variable in class loci.poi.hssf.record.NameRecord

field_12_textRotation - Variable in class loci.poi.hssf.record.TextRecord

field_12_zero5 - Variable in class loci.poi.hssf.record.TickRecord

field_13_name_definition - Variable in class loci.poi.hssf.record.NameRecord

field_14_custom_menu_text - Variable in class loci.poi.hssf.record.NameRecord

field_15_description_text - Variable in class loci.poi.hssf.record.NameRecord

field_16_help_topic_text - Variable in class loci.poi.hssf.record.NameRecord

field_17_status_bar_text - Variable in class loci.poi.hssf.record.NameRecord

field_1_addMenuCount - Variable in class loci.poi.hssf.record.MMSRecord

field_1_anchorId - Variable in class loci.poi.hssf.record.ObjectLinkRecord

field_1_axisType - Variable in class loci.poi.hssf.record.AxisLineFormatRecord

field_1_axisType - Variable in class loci.poi.hssf.record.AxisParentRecord

field_1_axisType - Variable in class loci.poi.hssf.record.AxisRecord

field_1_backup - Variable in class loci.poi.hssf.record.BackupRecord

field_1_barSpace - Variable in class loci.poi.hssf.record.BarRecord

field_1_blipTypeWin32 - Variable in class loci.poi.ddf.EscherBSERecord

field_1_borderType - Variable in class loci.poi.hssf.record.FrameRecord

field_1_calcmode - Variable in class loci.poi.hssf.record.CalcModeRecord

field_1_categoryDataType - Variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

field_1_categoryDataType - Variable in class loci.poi.hssf.record.SeriesRecord

field_1_charCount - Variable in class loci.poi.hssf.record.UnicodeString

field_1_chartGroupIndex - Variable in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

field_1_chartGroupIndex - Variable in class loci.poi.hssf.record.SeriesToChartGroupRecord

field_1_codepage - Variable in class loci.poi.hssf.record.CodepageRecord

field_1_codepage - Variable in class loci.poi.hssf.record.InterfaceHdrRecord

field_1_col_width - Variable in class loci.poi.hssf.record.DefaultColWidthRecord

field_1_color1 - Variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

field_1_count - Variable in class loci.poi.hssf.record.FnGroupCountRecord

field_1_crossingPoint - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

field_1_data - Variable in class loci.poi.hssf.record.ContinueRecord

field_1_default_country - Variable in class loci.poi.hssf.record.CountryRecord

field_1_drawingGroupId - Variable in class loci.poi.ddf.EscherDggRecord.FileIdCluster

field_1_dsf - Variable in class loci.poi.hssf.record.DSFRecord

field_1_dx1 - Variable in class loci.poi.ddf.EscherChildAnchorRecord

field_1_encryptedpassword - Variable in class loci.poi.hssf.record.FilePassRecord

field_1_error_code - Variable in class loci.poi.hssf.record.formula.ErrPtg

field_1_first_col - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_1_first_row - Variable in class loci.poi.hssf.record.DimensionsRecord

field_1_first_row - Variable in class loci.poi.hssf.record.formula.AreaPtg

field_1_first_row - Variable in class loci.poi.hssf.record.formula.ExpPtg

field_1_first_row - Variable in class loci.poi.hssf.record.SelectionRecord.Reference

field_1_first_row - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_1_flag - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_1_flag - Variable in class loci.poi.hssf.record.UseSelFSRecord

field_1_flags - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

field_1_font_height - Variable in class loci.poi.hssf.record.FontRecord

field_1_font_index - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_1_fontIndex - Variable in class loci.poi.hssf.record.FontIndexRecord

field_1_footer_len - Variable in class loci.poi.hssf.record.FooterRecord

field_1_foregroundColor - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_1_formatFlags - Variable in class loci.poi.hssf.record.AreaRecord

field_1_formatFlags - Variable in class loci.poi.hssf.record.SeriesLabelsRecord

field_1_formatIndex - Variable in class loci.poi.hssf.record.NumberFormatIndexRecord

field_1_gridset_flag - Variable in class loci.poi.hssf.record.GridsetRecord

field_1_h_hold - Variable in class loci.poi.hssf.record.WindowOneRecord

field_1_hcenter - Variable in class loci.poi.hssf.record.HCenterRecord

field_1_header_len - Variable in class loci.poi.hssf.record.HeaderRecord

field_1_hide_obj - Variable in class loci.poi.hssf.record.HideObjRecord

field_1_horizontalAlignment - Variable in class loci.poi.hssf.record.TextRecord

field_1_horizontalScale - Variable in class loci.poi.hssf.record.PlotGrowthRecord

field_1_id - Variable in class loci.poi.hssf.record.SeriesTextRecord

field_1_index - Variable in class loci.poi.hssf.record.SeriesIndexRecord

field_1_index_code - Variable in class loci.poi.hssf.record.FormatRecord

field_1_index_extern_sheet - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_1_index_extern_sheet - Variable in class loci.poi.hssf.record.formula.Ref3DPtg

field_1_index_to_supbook - Variable in class loci.poi.hssf.record.ExternSheetSubRecord

field_1_iteration - Variable in class loci.poi.hssf.record.IterationRecord

field_1_iterations - Variable in class loci.poi.hssf.record.CalcCountRecord

field_1_ixals - Variable in class loci.poi.hssf.record.formula.NameXPtg

field_1_label_index - Variable in class loci.poi.hssf.record.formula.NamePtg

field_1_left_row_gutter - Variable in class loci.poi.hssf.record.GutsRecord

field_1_len_ref_subexpression - Variable in class loci.poi.hssf.record.formula.MemFuncPtg

field_1_length - Variable in class loci.poi.hssf.record.formula.StringPtg

field_1_lineColor - Variable in class loci.poi.hssf.record.LineFormatRecord

field_1_linkType - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_1_majorTickType - Variable in class loci.poi.hssf.record.TickRecord

field_1_margin - Variable in class loci.poi.hssf.record.BottomMarginRecord

field_1_margin - Variable in class loci.poi.hssf.record.LeftMarginRecord

field_1_margin - Variable in class loci.poi.hssf.record.RightMarginRecord

field_1_margin - Variable in class loci.poi.hssf.record.TopMarginRecord

field_1_max_change - Variable in class loci.poi.hssf.record.DeltaRecord

field_1_minimumAxisValue - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_1_minimumCategory - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_1_mode - Variable in class loci.poi.hssf.record.RefModeRecord

field_1_num_args - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

field_1_num_strings - Variable in class loci.poi.hssf.record.SSTRecord

union of strings in the SST and EXTSST

field_1_numAxis - Variable in class loci.poi.hssf.record.AxisUsedRecord

field_1_number_of_REF_sturcutres - Variable in class loci.poi.hssf.record.ExternSheetRecord

field_1_number_of_sheets - Variable in class loci.poi.hssf.record.SupBookRecord

field_1_numcolors - Variable in class loci.poi.hssf.record.PaletteRecord

field_1_numerator - Variable in class loci.poi.hssf.record.SCLRecord

field_1_numShapes - Variable in class loci.poi.ddf.EscherDgRecord

field_1_objectType - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_1_option_flag - Variable in class loci.poi.hssf.record.NameRecord

field_1_option_flags - Variable in class loci.poi.hssf.record.DefaultRowHeightRecord

field_1_options - Variable in class loci.poi.hssf.record.DatRecord

field_1_options - Variable in class loci.poi.hssf.record.formula.AttrPtg

field_1_options - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_1_options - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_1_pane - Variable in class loci.poi.hssf.record.SelectionRecord

field_1_paper_size - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_1_password - Variable in class loci.poi.hssf.record.PasswordRecord

field_1_password - Variable in class loci.poi.hssf.record.PasswordRev4Record

field_1_pointNumber - Variable in class loci.poi.hssf.record.DataFormatRecord

field_1_position_of_BOF - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_1_precision - Variable in class loci.poi.hssf.record.PrecisionRecord

field_1_print_gridlines - Variable in class loci.poi.hssf.record.PrintGridlinesRecord

field_1_print_headers - Variable in class loci.poi.hssf.record.PrintHeadersRecord

field_1_protect - Variable in class loci.poi.hssf.record.ObjectProtectRecord

field_1_protect - Variable in class loci.poi.hssf.record.ProtectionRev4Record

field_1_protect - Variable in class loci.poi.hssf.record.ProtectRecord

field_1_protect - Variable in class loci.poi.hssf.record.ScenarioProtectRecord

field_1_protect - Variable in class loci.poi.hssf.record.WindowProtectRecord

field_1_readonly - Variable in class loci.poi.hssf.record.FileSharingRecord

field_1_recalc - Variable in class loci.poi.hssf.record.SaveRecalcRecord

field_1_recalcids - Variable in class loci.poi.hssf.record.RecalcIdRecord

field_1_rectX1 - Variable in class loci.poi.ddf.EscherSpgrRecord

field_1_refreshall - Variable in class loci.poi.hssf.record.RefreshAllRecord

field_1_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_1_reserved - Variable in class loci.poi.hssf.record.formula.MemAreaPtg

field_1_reserved - Variable in class loci.poi.hssf.record.formula.RefErrorPtg

field_1_row - Variable in class loci.poi.hssf.record.BlankRecord

field_1_row - Variable in class loci.poi.hssf.record.BoolErrRecord

field_1_row - Variable in class loci.poi.hssf.record.formula.ReferencePtg

The row number, between 0 and 65535, but stored as a signed short between -32767 and 32768.

field_1_row - Variable in class loci.poi.hssf.record.FormulaRecord

field_1_row - Variable in class loci.poi.hssf.record.LabelRecord

field_1_row - Variable in class loci.poi.hssf.record.LabelSSTRecord

field_1_row - Variable in class loci.poi.hssf.record.MulBlankRecord

field_1_row - Variable in class loci.poi.hssf.record.MulRKRecord

field_1_row - Variable in class loci.poi.hssf.record.NoteRecord

field_1_row - Variable in class loci.poi.hssf.record.NumberRecord

field_1_row - Variable in class loci.poi.hssf.record.RKRecord

field_1_row_number - Variable in class loci.poi.hssf.record.RowRecord

field_1_row_offset - Variable in class loci.poi.hssf.record.DBCellRecord

field_1_save_link_values - Variable in class loci.poi.hssf.record.BookBoolRecord

field_1_secondaryUID - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_1_seriesNumbers - Variable in class loci.poi.hssf.record.SeriesListRecord

field_1_shapeId - Variable in class loci.poi.ddf.EscherSpRecord

field_1_shapeIdMax - Variable in class loci.poi.ddf.EscherDggRecord

field_1_stream_id_offset - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_1_stream_pos - Variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord

field_1_string_length - Variable in class loci.poi.hssf.record.StringRecord

field_1_strings_per_bucket - Variable in class loci.poi.hssf.record.ExtSSTRecord

field_1_tabids - Variable in class loci.poi.hssf.record.TabIdRecord

field_1_UID - Variable in class loci.poi.ddf.EscherBitmapBlip

field_1_UID - Variable in class loci.poi.ddf.EscherMetafileBlip

field_1_UID - Variable in class loci.poi.ddf.EscherPictBlip

field_1_units - Variable in class loci.poi.hssf.record.UnitsRecord

field_1_username - Variable in class loci.poi.hssf.record.WriteAccessRecord

field_1_value - Variable in class loci.poi.hssf.record.formula.BoolPtg

field_1_value - Variable in class loci.poi.hssf.record.formula.IntPtg

field_1_value - Variable in class loci.poi.hssf.record.formula.NumberPtg

field_1_vcenter - Variable in class loci.poi.hssf.record.VCenterRecord

field_1_version - Variable in class loci.poi.hssf.record.BOFRecord

field_1_window - Variable in class loci.poi.hssf.record.DateWindow1904Record

field_1_wsbool - Variable in class loci.poi.hssf.record.WSBoolRecord

field_1_x - Variable in class loci.poi.hssf.record.ChartRecord

field_1_x - Variable in class loci.poi.hssf.record.PaneRecord

field_1_xAxisUpperLeft - Variable in class loci.poi.hssf.record.LegendRecord

field_1_xBasis - Variable in class loci.poi.hssf.record.FontBasisRecord

field_1_xf_index - Variable in class loci.poi.hssf.record.StyleRecord

field_1_zero - Variable in class loci.poi.hssf.record.IndexRecord

field_2_attributes - Variable in class loci.poi.hssf.record.FontRecord

field_2_backgroundColor - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_2_blipTypeMacOS - Variable in class loci.poi.ddf.EscherBSERecord

field_2_bucket_sst_offset - Variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord

field_2_builtin_style - Variable in class loci.poi.hssf.record.StyleRecord

field_2_cacheOfSize - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_2_categorySpace - Variable in class loci.poi.hssf.record.BarRecord

field_2_cb - Variable in class loci.poi.ddf.EscherMetafileBlip

field_2_cb - Variable in class loci.poi.ddf.EscherPictBlip

field_2_cell_offsets - Variable in class loci.poi.hssf.record.DBCellRecord

field_2_col - Variable in class loci.poi.hssf.record.BlankRecord

field_2_col - Variable in class loci.poi.hssf.record.formula.ReferencePtg

The column number, between 0 and ??

field_2_col - Variable in class loci.poi.hssf.record.NoteRecord

field_2_col - Variable in class loci.poi.hssf.record.NumberRecord

field_2_col - Variable in class loci.poi.hssf.record.RKRecord

field_2_col1 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_2_color2 - Variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

field_2_colors - Variable in class loci.poi.hssf.record.PaletteRecord

field_2_column - Variable in class loci.poi.hssf.record.BoolErrRecord

field_2_column - Variable in class loci.poi.hssf.record.FormulaRecord

field_2_column - Variable in class loci.poi.hssf.record.LabelRecord

field_2_column - Variable in class loci.poi.hssf.record.LabelSSTRecord

field_2_current_country - Variable in class loci.poi.hssf.record.CountryRecord

field_2_data - Variable in class loci.poi.hssf.record.formula.AttrPtg

field_2_delMenuCount - Variable in class loci.poi.hssf.record.MMSRecord

field_2_denominator - Variable in class loci.poi.hssf.record.SCLRecord

field_2_dy1 - Variable in class loci.poi.ddf.EscherChildAnchorRecord

field_2_empty - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

field_2_first_col - Variable in class loci.poi.hssf.record.formula.ExpPtg

field_2_first_col - Variable in class loci.poi.hssf.record.MulBlankRecord

field_2_first_col - Variable in class loci.poi.hssf.record.MulRKRecord

field_2_first_col - Variable in class loci.poi.hssf.record.RowRecord

field_2_first_row - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_2_first_row - Variable in class loci.poi.hssf.record.IndexRecord

field_2_flag - Variable in class loci.poi.hssf.record.SupBookRecord

field_2_flags - Variable in class loci.poi.ddf.EscherSpRecord

field_2_fnc_index - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

field_2_format_index - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_2_ilbl - Variable in class loci.poi.hssf.record.formula.NameXPtg

field_2_index_to_first_supbook_sheet - Variable in class loci.poi.hssf.record.ExternSheetSubRecord

field_2_keyboard_shortcut - Variable in class loci.poi.hssf.record.NameRecord

field_2_labelFrequency - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

field_2_last_col - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_2_last_row - Variable in class loci.poi.hssf.record.DimensionsRecord

field_2_last_row - Variable in class loci.poi.hssf.record.formula.AreaPtg

field_2_last_row - Variable in class loci.poi.hssf.record.SelectionRecord.Reference

field_2_last_row - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_2_lastMSOSPID - Variable in class loci.poi.ddf.EscherDgRecord

field_2_linePattern - Variable in class loci.poi.hssf.record.LineFormatRecord

field_2_link1 - Variable in class loci.poi.hssf.record.ObjectLinkRecord

field_2_marker - Variable in class loci.poi.ddf.EscherBitmapBlip

field_2_maximumAxisValue - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_2_maximumCategory - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_2_minorTickType - Variable in class loci.poi.hssf.record.TickRecord

field_2_name_length - Variable in class loci.poi.hssf.record.StyleRecord

field_2_num_unique_strings - Variable in class loci.poi.hssf.record.SSTRecord

according to docs ONLY SST

field_2_numShapeIdsUsed - Variable in class loci.poi.ddf.EscherDggRecord.FileIdCluster

field_2_objectId - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_2_option_flags - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_2_optionflags - Variable in class loci.poi.hssf.record.UnicodeString

field_2_options - Variable in class loci.poi.hssf.record.formula.StringPtg

field_2_options - Variable in class loci.poi.hssf.record.FrameRecord

field_2_password - Variable in class loci.poi.hssf.record.FileSharingRecord

field_2_rectY1 - Variable in class loci.poi.ddf.EscherSpgrRecord

field_2_REF_structures - Variable in class loci.poi.hssf.record.ExternSheetRecord

field_2_referenceType - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_2_regions - Variable in class loci.poi.hssf.record.MergeCellsRecord

field_2_reserved - Variable in class loci.poi.hssf.record.FooterRecord

field_2_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_2_reserved - Variable in class loci.poi.hssf.record.HeaderRecord

field_2_reserved1 - Variable in class loci.poi.hssf.record.AxisRecord

field_2_row - Variable in class loci.poi.hssf.record.formula.Ref3DPtg

field_2_row_active_cell - Variable in class loci.poi.hssf.record.SelectionRecord

field_2_row_height - Variable in class loci.poi.hssf.record.DefaultRowHeightRecord

field_2_scale - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_2_seriesIndex - Variable in class loci.poi.hssf.record.DataFormatRecord

field_2_sst_info - Variable in class loci.poi.hssf.record.ExtSSTRecord

field_2_subex_len - Variable in class loci.poi.hssf.record.formula.MemAreaPtg

field_2_textLength - Variable in class loci.poi.hssf.record.SeriesTextRecord

field_2_textOrientation - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_2_top_col_gutter - Variable in class loci.poi.hssf.record.GutsRecord

field_2_top_row - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_2_type - Variable in class loci.poi.hssf.record.BOFRecord

field_2_unicode_flag - Variable in class loci.poi.hssf.record.StringRecord

field_2_unknown - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_2_v_hold - Variable in class loci.poi.hssf.record.WindowOneRecord

field_2_valuesDataType - Variable in class loci.poi.hssf.record.SeriesRecord

field_2_verticalAlignment - Variable in class loci.poi.hssf.record.TextRecord

field_2_verticalScale - Variable in class loci.poi.hssf.record.PlotGrowthRecord

field_2_wsbool - Variable in class loci.poi.hssf.record.WSBoolRecord

field_2_x - Variable in class loci.poi.hssf.record.AxisParentRecord

field_2_y - Variable in class loci.poi.hssf.record.ChartRecord

field_2_y - Variable in class loci.poi.hssf.record.PaneRecord

field_2_yAxisUpperLeft - Variable in class loci.poi.hssf.record.LegendRecord

field_2_yBasis - Variable in class loci.poi.hssf.record.FontBasisRecord

field_2_zero - Variable in class loci.poi.hssf.record.formula.NamePtg

field_3_boundaryTop - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_3_build - Variable in class loci.poi.hssf.record.BOFRecord

field_3_cell_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_3_col_active_cell - Variable in class loci.poi.hssf.record.SelectionRecord

field_3_col_width - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_3_color3 - Variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

field_3_color_palette_index - Variable in class loci.poi.hssf.record.FontRecord

field_3_column - Variable in class loci.poi.hssf.record.formula.Ref3DPtg

field_3_displayMode - Variable in class loci.poi.hssf.record.TextRecord

field_3_dx1 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_3_dx2 - Variable in class loci.poi.ddf.EscherChildAnchorRecord

field_3_first_col - Variable in class loci.poi.hssf.record.DimensionsRecord

field_3_first_column - Variable in class loci.poi.hssf.record.formula.AreaPtg

field_3_first_column - Variable in class loci.poi.hssf.record.SelectionRecord.Reference

field_3_first_column - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_3_flags - Variable in class loci.poi.hssf.record.NoteRecord

field_3_formatFlags - Variable in class loci.poi.hssf.record.BarRecord

field_3_heightBasis - Variable in class loci.poi.hssf.record.FontBasisRecord

field_3_index_to_last_supbook_sheet - Variable in class loci.poi.hssf.record.ExternSheetSubRecord

field_3_labelPosition - Variable in class loci.poi.hssf.record.TickRecord

field_3_last_col - Variable in class loci.poi.hssf.record.RowRecord

field_3_last_row - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_3_last_row_add1 - Variable in class loci.poi.hssf.record.IndexRecord

field_3_left_col - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_3_length_name_text - Variable in class loci.poi.hssf.record.NameRecord

field_3_link2 - Variable in class loci.poi.hssf.record.ObjectLinkRecord

field_3_majorIncrement - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_3_majorUnitValue - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_3_numCategories - Variable in class loci.poi.hssf.record.SeriesRecord

field_3_numShapesSaved - Variable in class loci.poi.ddf.EscherDggRecord

field_3_option - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_3_options - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_3_outline_style_level - Variable in class loci.poi.hssf.record.StyleRecord

field_3_page_start - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_3_pattern - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_3_rcBounds_x1 - Variable in class loci.poi.ddf.EscherMetafileBlip

field_3_rcBounds_x1 - Variable in class loci.poi.ddf.EscherPictBlip

field_3_rcBounds_x2 - Variable in class loci.poi.ddf.EscherMetafileBlip

field_3_rcBounds_x2 - Variable in class loci.poi.ddf.EscherPictBlip

field_3_rcBounds_y1 - Variable in class loci.poi.ddf.EscherMetafileBlip

field_3_rcBounds_y1 - Variable in class loci.poi.ddf.EscherPictBlip

field_3_rcBounds_y2 - Variable in class loci.poi.ddf.EscherMetafileBlip

field_3_rcBounds_y2 - Variable in class loci.poi.ddf.EscherPictBlip

field_3_rectX2 - Variable in class loci.poi.ddf.EscherSpgrRecord

field_3_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_3_reserved - Variable in class loci.poi.hssf.record.formula.NameXPtg

field_3_reserved2 - Variable in class loci.poi.hssf.record.AxisRecord

field_3_reserved4 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_3_rks - Variable in class loci.poi.hssf.record.MulRKRecord

field_3_row_level_max - Variable in class loci.poi.hssf.record.GutsRecord

field_3_seriesNumber - Variable in class loci.poi.hssf.record.DataFormatRecord

field_3_sheetname_length - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_3_string - Variable in class loci.poi.hssf.record.formula.StringPtg

field_3_string - Variable in class loci.poi.hssf.record.StringRecord

field_3_string - Variable in class loci.poi.hssf.record.UnicodeString

field_3_string_options - Variable in class loci.poi.hssf.record.StyleRecord

field_3_strings - Variable in class loci.poi.hssf.record.SSTRecord

field_3_tickMarkFrequency - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

field_3_topRow - Variable in class loci.poi.hssf.record.PaneRecord

field_3_uid - Variable in class loci.poi.ddf.EscherBSERecord

field_3_undocumented - Variable in class loci.poi.hssf.record.SeriesTextRecord

field_3_unicode_flag - Variable in class loci.poi.hssf.record.FooterRecord

field_3_unicode_flag - Variable in class loci.poi.hssf.record.FormatRecord

field_3_unicode_flag - Variable in class loci.poi.hssf.record.HeaderRecord

field_3_unicode_len - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_3_unicode_len - Variable in class loci.poi.hssf.record.FormatRecord

field_3_username_length - Variable in class loci.poi.hssf.record.FileSharingRecord

field_3_weight - Variable in class loci.poi.hssf.record.LineFormatRecord

field_3_width - Variable in class loci.poi.hssf.record.ChartRecord

field_3_width - Variable in class loci.poi.hssf.record.WindowOneRecord

field_3_xf - Variable in class loci.poi.hssf.record.BlankRecord

field_3_xf - Variable in class loci.poi.hssf.record.FormulaRecord

field_3_xf - Variable in class loci.poi.hssf.record.NumberRecord

field_3_xf_index - Variable in class loci.poi.hssf.record.BoolErrRecord

field_3_xf_index - Variable in class loci.poi.hssf.record.LabelRecord

field_3_xf_index - Variable in class loci.poi.hssf.record.LabelSSTRecord

field_3_xf_index - Variable in class loci.poi.hssf.record.RKRecord

field_3_xfs - Variable in class loci.poi.hssf.record.MulBlankRecord

field_3_xSize - Variable in class loci.poi.hssf.record.LegendRecord

field_3_y - Variable in class loci.poi.hssf.record.AxisParentRecord

field_3_zero - Variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord

field_4_alignment_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_4_background - Variable in class loci.poi.hssf.record.TickRecord

field_4_bBoolErr - Variable in class loci.poi.hssf.record.BoolErrRecord

field_4_bold_weight - Variable in class loci.poi.hssf.record.FontRecord

field_4_boundaryLeft - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_4_col_level_max - Variable in class loci.poi.hssf.record.GutsRecord

field_4_color4 - Variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

field_4_compressed_unicode_flag - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_4_drawingsSaved - Variable in class loci.poi.ddf.EscherDggRecord

field_4_dy2 - Variable in class loci.poi.ddf.EscherChildAnchorRecord

field_4_first_column - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_4_fit_width - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_4_footer - Variable in class loci.poi.hssf.record.FooterRecord

field_4_format - Variable in class loci.poi.hssf.record.LineFormatRecord

field_4_format_runs - Variable in class loci.poi.hssf.record.UnicodeString

field_4_formatFlags - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_4_formatFlags - Variable in class loci.poi.hssf.record.DataFormatRecord

field_4_formatstring - Variable in class loci.poi.hssf.record.FormatRecord

field_4_header - Variable in class loci.poi.hssf.record.HeaderRecord

field_4_header_color - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_4_height - Variable in class loci.poi.hssf.record.ChartRecord

field_4_height - Variable in class loci.poi.hssf.record.RowRecord

field_4_height - Variable in class loci.poi.hssf.record.WindowOneRecord

field_4_indexNumberFmtRecord - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_4_last_col - Variable in class loci.poi.hssf.record.DimensionsRecord

field_4_last_col - Variable in class loci.poi.hssf.record.MulBlankRecord

field_4_last_col - Variable in class loci.poi.hssf.record.MulRKRecord

field_4_last_column - Variable in class loci.poi.hssf.record.formula.AreaPtg

field_4_last_column - Variable in class loci.poi.hssf.record.SelectionRecord.Reference

field_4_last_column - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_4_leftColumn - Variable in class loci.poi.hssf.record.PaneRecord

field_4_length_name_definition - Variable in class loci.poi.hssf.record.NameRecord

field_4_majorUnit - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_4_minorIncrement - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_4_name - Variable in class loci.poi.hssf.record.StyleRecord

field_4_numValues - Variable in class loci.poi.hssf.record.SeriesRecord

field_4_options - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

field_4_ptSize_h - Variable in class loci.poi.ddf.EscherMetafileBlip

field_4_ptSize_h - Variable in class loci.poi.ddf.EscherPictBlip

field_4_ptSize_w - Variable in class loci.poi.ddf.EscherMetafileBlip

field_4_ptSize_w - Variable in class loci.poi.ddf.EscherPictBlip

field_4_rectY2 - Variable in class loci.poi.ddf.EscherSpgrRecord

field_4_ref_active_cell - Variable in class loci.poi.hssf.record.SelectionRecord

field_4_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_4_reserved1 - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_4_reserved3 - Variable in class loci.poi.hssf.record.AxisRecord

field_4_reserved5 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_4_rgbColor - Variable in class loci.poi.hssf.record.TextRecord

field_4_rk_number - Variable in class loci.poi.hssf.record.RKRecord

field_4_row1 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_4_scale - Variable in class loci.poi.hssf.record.FontBasisRecord

field_4_shapeid - Variable in class loci.poi.hssf.record.NoteRecord

field_4_sst_index - Variable in class loci.poi.hssf.record.LabelSSTRecord

field_4_string_len - Variable in class loci.poi.hssf.record.LabelRecord

field_4_tag - Variable in class loci.poi.ddf.EscherBSERecord

field_4_text - Variable in class loci.poi.hssf.record.SeriesTextRecord

field_4_unicode_flag - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_4_unknown - Variable in class loci.poi.hssf.record.FileSharingRecord

field_4_value - Variable in class loci.poi.hssf.record.FormulaRecord

field_4_value - Variable in class loci.poi.hssf.record.NumberRecord

field_4_width - Variable in class loci.poi.hssf.record.AxisParentRecord

field_4_xf_index - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_4_year - Variable in class loci.poi.hssf.record.BOFRecord

field_4_ySize - Variable in class loci.poi.hssf.record.LegendRecord

field_4_zero - Variable in class loci.poi.hssf.record.IndexRecord

field_5_activePane - Variable in class loci.poi.hssf.record.PaneRecord

field_5_author - Variable in class loci.poi.hssf.record.NoteRecord

field_5_boundaryWidth - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_5_bubbleSeriesType - Variable in class loci.poi.hssf.record.SeriesRecord

field_5_categoryAxisCross - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_5_cbSave - Variable in class loci.poi.ddf.EscherMetafileBlip

field_5_cbSave - Variable in class loci.poi.ddf.EscherPictBlip

field_5_colourPaletteIndex - Variable in class loci.poi.hssf.record.LineFormatRecord

field_5_dbcells - Variable in class loci.poi.hssf.record.IndexRecord

field_5_dy1 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_5_ext_rst - Variable in class loci.poi.hssf.record.UnicodeString

field_5_fError - Variable in class loci.poi.hssf.record.BoolErrRecord

field_5_fileIdClusters - Variable in class loci.poi.ddf.EscherDggRecord

field_5_fit_height - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_5_forecolorIndex - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_5_formulaOfLink - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_5_height - Variable in class loci.poi.hssf.record.AxisParentRecord

field_5_history - Variable in class loci.poi.hssf.record.BOFRecord

field_5_indention_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_5_index_to_sheet - Variable in class loci.poi.hssf.record.NameRecord

field_5_indexToFontTable - Variable in class loci.poi.hssf.record.FontBasisRecord

field_5_labelColorRgb - Variable in class loci.poi.hssf.record.TickRecord

field_5_last_column - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_5_minorUnitValue - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_5_num_refs - Variable in class loci.poi.hssf.record.SelectionRecord

field_5_ole_classname - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_5_optimize - Variable in class loci.poi.hssf.record.RowRecord

field_5_options - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_5_options - Variable in class loci.poi.hssf.record.FormulaRecord

field_5_options - Variable in class loci.poi.hssf.record.WindowOneRecord

field_5_page_break_zoom - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_5_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_5_reserved - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_5_reserved2 - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_5_reserved4 - Variable in class loci.poi.hssf.record.AxisRecord

field_5_reserved6 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_5_sheetname - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_5_size - Variable in class loci.poi.ddf.EscherBSERecord

field_5_super_sub_script - Variable in class loci.poi.hssf.record.FontRecord

field_5_type - Variable in class loci.poi.hssf.record.LegendRecord

field_5_unicode_flag - Variable in class loci.poi.hssf.record.LabelRecord

field_5_username - Variable in class loci.poi.hssf.record.FileSharingRecord

field_5_x - Variable in class loci.poi.hssf.record.TextRecord

field_5_zero - Variable in class loci.poi.hssf.record.DimensionsRecord

field_6_backcolorIndex - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_6_border_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_6_boundaryHeight - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_6_col2 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_6_equals_to_index_to_sheet - Variable in class loci.poi.hssf.record.NameRecord

field_6_expression_len - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_6_fCompression - Variable in class loci.poi.ddf.EscherMetafileBlip

field_6_fCompression - Variable in class loci.poi.ddf.EscherPictBlip

field_6_minorUnit - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_6_normal_zoom - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_6_numBubbleValues - Variable in class loci.poi.hssf.record.SeriesRecord

field_6_options - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_6_options - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_6_ref - Variable in class loci.poi.ddf.EscherBSERecord

field_6_refs - Variable in class loci.poi.hssf.record.SelectionRecord

field_6_reserved - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_6_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_6_reserved - Variable in class loci.poi.hssf.record.RowRecord

field_6_reserved3 - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_6_rversion - Variable in class loci.poi.hssf.record.BOFRecord

field_6_selected_tab - Variable in class loci.poi.hssf.record.WindowOneRecord

field_6_spacing - Variable in class loci.poi.hssf.record.LegendRecord

field_6_stream_id - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_6_textLength - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_6_underline - Variable in class loci.poi.hssf.record.FontRecord

field_6_value - Variable in class loci.poi.hssf.record.LabelRecord

field_6_y - Variable in class loci.poi.hssf.record.TextRecord

field_6_zero - Variable in class loci.poi.hssf.record.FormulaRecord

field_6_zero1 - Variable in class loci.poi.hssf.record.TickRecord

field_7_baseUnit - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_7_displayed_tab - Variable in class loci.poi.hssf.record.WindowOneRecord

field_7_dx2 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_7_expression_len - Variable in class loci.poi.hssf.record.FormulaRecord

field_7_family - Variable in class loci.poi.hssf.record.FontRecord

field_7_fFilter - Variable in class loci.poi.ddf.EscherMetafileBlip

field_7_fFilter - Variable in class loci.poi.ddf.EscherPictBlip

field_7_formattingRunLength - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_7_hresolution - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_7_length_custom_menu - Variable in class loci.poi.hssf.record.NameRecord

field_7_offset - Variable in class loci.poi.ddf.EscherBSERecord

field_7_option_flags - Variable in class loci.poi.hssf.record.RowRecord

field_7_options - Variable in class loci.poi.hssf.record.LegendRecord

field_7_palette_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_7_parsed_expr - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_7_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_7_reserved - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_7_width - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_7_width - Variable in class loci.poi.hssf.record.TextRecord

field_7_zero2 - Variable in class loci.poi.hssf.record.TickRecord

field_8_adtl_palette_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_8_charset - Variable in class loci.poi.hssf.record.FontRecord

field_8_crossingPoint - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_8_height - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_8_height - Variable in class loci.poi.hssf.record.TextRecord

field_8_length_description_text - Variable in class loci.poi.hssf.record.NameRecord

field_8_num_selected_tabs - Variable in class loci.poi.hssf.record.WindowOneRecord

field_8_parsed_expr - Variable in class loci.poi.hssf.record.FormulaRecord

field_8_reserved7 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_8_row2 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_8_usage - Variable in class loci.poi.ddf.EscherBSERecord

field_8_vresolution - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_8_xf_index - Variable in class loci.poi.hssf.record.RowRecord

field_8_zero3 - Variable in class loci.poi.hssf.record.TickRecord

field_9_cacheOfSavedSize - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_9_dy2 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_9_fill_palette_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_9_headermargin - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_9_length_help_topic_text - Variable in class loci.poi.hssf.record.NameRecord

field_9_name - Variable in class loci.poi.ddf.EscherBSERecord

field_9_options - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_9_options1 - Variable in class loci.poi.hssf.record.TextRecord

field_9_tab_width_ratio - Variable in class loci.poi.hssf.record.WindowOneRecord

field_9_zero - Variable in class loci.poi.hssf.record.FontRecord

field_9_zero4 - Variable in class loci.poi.hssf.record.TickRecord

FIELD_A_ID - Static variable in class mdbtools.dbengine.Tests

FIELD_A_S - Static variable in class mdbtools.dbengine.Tests

FIELD_AUX_FLAGS - Static variable in class loci.formats.in.IM3Reader

FIELD_BAND_INDEX - Static variable in class loci.formats.in.IM3Reader

FIELD_BANDS - Static variable in class loci.formats.in.IM3Reader

FIELD_CARS_ID - Static variable in class mdbtools.dbengine.Tests

FIELD_CARS_MAKE - Static variable in class mdbtools.dbengine.Tests

FIELD_CARS_MODEL - Static variable in class mdbtools.dbengine.Tests

FIELD_CARS_OWNER - Static variable in class mdbtools.dbengine.Tests

FIELD_CLASS_ID - Static variable in class loci.formats.in.IM3Reader

FIELD_DATA - Static variable in class loci.formats.in.IM3Reader

FIELD_DATA_SET - Static variable in class loci.formats.in.IM3Reader

FIELD_EXPOSURE - Static variable in class loci.formats.in.IM3Reader

FIELD_FILE_VERSION - Static variable in class loci.formats.in.IM3Reader

FIELD_FILTER_PAIR - Static variable in class loci.formats.in.IM3Reader

FIELD_FIXED_FILTER - Static variable in class loci.formats.in.IM3Reader

FIELD_HOMOGENEOUS - Static variable in class loci.formats.in.IM3Reader

FIELD_INDEX - Static variable in class loci.formats.in.ND2Handler

FIELD_LOCATION_CITY - Static variable in class mdbtools.dbengine.Tests

FIELD_LOCATION_ID - Static variable in class mdbtools.dbengine.Tests

FIELD_LOCATION_STATE - Static variable in class mdbtools.dbengine.Tests

FIELD_MAGNITUDES - Static variable in class loci.formats.in.IM3Reader

FIELD_MANUFACTURER - Static variable in class loci.formats.in.IM3Reader

FIELD_MILLIMETERS_PER_PIXEL - Static variable in class loci.formats.in.IM3Reader

FIELD_NAME - Static variable in class loci.formats.in.IM3Reader

FIELD_NUANCE_FLAGS - Static variable in class loci.formats.in.IM3Reader

FIELD_OBJECTIVE - Static variable in class loci.formats.in.IM3Reader

FIELD_PART_NUMBER - Static variable in class loci.formats.in.IM3Reader

FIELD_PERSON_ID - Static variable in class mdbtools.dbengine.Tests

FIELD_PERSON_LOCATION - Static variable in class mdbtools.dbengine.Tests

FIELD_PERSON_NAME - Static variable in class mdbtools.dbengine.Tests

field_pictureData - Variable in class loci.poi.ddf.EscherBlipRecord

FIELD_PROTOCOL - Static variable in class loci.formats.in.IM3Reader

FIELD_PROXY_PARENT_FILE_NAME - Static variable in class loci.formats.in.IM3Reader

FIELD_SAMPLE_ID - Static variable in class loci.formats.in.IM3Reader

FIELD_SHAPE - Static variable in class loci.formats.in.IM3Reader

FIELD_SOURCE_FILE_NAME - Static variable in class loci.formats.in.IM3Reader

FIELD_SPECTRA - Static variable in class loci.formats.in.IM3Reader

FIELD_SPECTRAL_BASIS_INFO - Static variable in class loci.formats.in.IM3Reader

FIELD_SPECTRAL_LIBRARY - Static variable in class loci.formats.in.IM3Reader

FIELD_SPECTRUM - Static variable in class loci.formats.in.IM3Reader

FIELD_THUMBNAIL - Static variable in class loci.formats.in.IM3Reader

FIELD_TIMESTAMP - Static variable in class loci.formats.in.IM3Reader

FIELD_TYPE - Static variable in class loci.formats.in.CellSensReader

FIELD_TYPE_ID - Static variable in class loci.formats.in.IM3Reader

FIELD_USER_COMMENTS - Static variable in class loci.formats.in.IM3Reader

FIELD_VALUES - Static variable in class loci.formats.in.IM3Reader

FIELD_WAVELENGTH - Static variable in class loci.formats.in.IM3Reader

FIELD_WAVELENGTHS - Static variable in class loci.formats.in.IM3Reader

fieldCol - Variable in class loci.formats.in.MetamorphTiffReader.Well

fieldCols - Variable in class loci.formats.in.BDReader

fieldColumnCount - Variable in class loci.formats.in.MetamorphTiffReader

fieldColumns - Variable in class loci.formats.in.ScanrReader

fieldCount - Variable in class loci.formats.in.CellWorxReader

fieldCount - Variable in class loci.formats.in.FlexReader

fieldCount - Variable in class loci.formats.in.InCellReader

fieldIndex - Variable in class loci.formats.in.FluoviewReader

fieldIndex - Variable in class loci.formats.in.NativeND2Reader

fieldIndex - Variable in class ome.xml.model.Plate

fieldMap - Variable in class loci.formats.in.CellWorxReader

fieldOffsets - Variable in class loci.formats.in.FluoviewReader

fieldPositionX - Variable in class loci.formats.in.ScanrReader

fieldPositionY - Variable in class loci.formats.in.ScanrReader

fieldPosX - Variable in class loci.formats.in.LIFReader

fieldPosY - Variable in class loci.formats.in.LIFReader

fieldRow - Variable in class loci.formats.in.MetamorphTiffReader.Well

fieldRowCount - Variable in class loci.formats.in.MetamorphTiffReader

fieldRows - Variable in class loci.formats.in.BDReader

fieldRows - Variable in class loci.formats.in.ScanrReader

fields - Variable in class loci.formats.in.CellVoyagerReader.AreaInfo

FIELDS - Static variable in class ome.specification.XMLMockObjects

The default number of fields for a well.

fifoTyp - Variable in class loci.formats.in.SDTInfo

Filament - Class in ome.xml.model

Filament() - Constructor for class ome.xml.model.Filament

Default constructor.

Filament(Element, OMEModel) - Constructor for class ome.xml.model.Filament

Constructs Filament recursively from an XML DOM tree.

Filament(Filament) - Constructor for class ome.xml.model.Filament

Copy constructor.

FILAMENT_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of a filament.

FilamentType - Enum in ome.xml.model.enums

FilamentType(String) - Constructor for enum ome.xml.model.enums.FilamentType

FilamentTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FilamentType.

FilamentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

fildaPoints - Variable in class loci.formats.in.SDTInfo

No of FILDA values.

fildaTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for FILDA histogram.

file - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

The name of the file from which to read the codestream and to write the JP2 file

file - Variable in class jj2000.j2k.util.CodestreamManipulator

The name of the outfile

file - Variable in class loci.common.Location

file - Variable in class loci.common.NIOInputStream

The file.

file - Variable in class loci.common.RandomAccessInputStream

The file name.

file - Variable in class loci.common.StreamHandle

Name of the open stream.

file - Variable in class loci.formats.in.FlexReader.FlexFile

file - Variable in class loci.formats.tools.EditTiffG

file - Variable in class loci.poi.hssf.dev.EFBiffViewer

file - Variable in class loci.poi.hssf.dev.FormulaViewer

file() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current file name

file() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current file name

File - Class in mdbtools.jdbc2

File(String) - Constructor for class mdbtools.jdbc2.File

file - Variable in class mdbtools.jdbc2.File

file - Class in mdbtools.libmdb

file() - Constructor for class mdbtools.libmdb.file

File - Class in ome.jxr.constants

Constants found in the file header structure.

File() - Constructor for class ome.jxr.constants.File

FILE_LENGTH - Static variable in class loci.formats.in.CanonRawReader

FILE_MAGIC_STRING - Static variable in class loci.formats.in.OBFReader

FILE_SOURCE - Static variable in class loci.formats.tiff.IFD

FILE_SOURCE_DSC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FileSource" tag.

FILE_TYPE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

FILE_VERSION - Static variable in class loci.formats.in.OBFReader

FileAnnotation - Class in ome.xml.model

FileAnnotation() - Constructor for class ome.xml.model.FileAnnotation

Default constructor.

FileAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.FileAnnotation

Constructs FileAnnotation recursively from an XML DOM tree.

FileAnnotation(FileAnnotation) - Constructor for class ome.xml.model.FileAnnotation

Copy constructor.

fileAnnotations - Variable in class ome.xml.model.StructuredAnnotations

FileBitstreamReaderAgent - Class in jj2000.j2k.codestream.reader

This class reads the bit stream (with the help of HeaderDecoder for tile headers and PktDecoder for packets header and body) and retrives location of all code-block's codewords.

FileBitstreamReaderAgent(HeaderDecoder, RandomAccessIO, DecoderSpecs, J2KImageReadParamJava, boolean, HeaderInfo) - Constructor for class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads all tiles headers and keep offset of their first packet.

fileBox - Variable in class loci.formats.tools.EditTiffG

FileChannelImageInputStream - Class in com.sun.media.imageio.stream

A class which implements ImageInputStream using a FileChannel as the eventual data source.

FileChannelImageInputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageInputStream

Constructs a FileChannelImageInputStream from a FileChannel.

FileChannelImageOutputStream - Class in com.sun.media.imageio.stream

A class which implements ImageOutputStream using a FileChannel as the eventual data destination.

FileChannelImageOutputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageOutputStream

Constructs a FileChannelImageOutputStream from a FileChannel.

FileCodestreamWriter - Class in jj2000.j2k.codestream.writer

This class implements a CodestreamWriter for Java streams.

FileCodestreamWriter(File, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Opens the file 'file' for writing the bit stream, using the 'he' header encoder.

FileCodestreamWriter(String, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Opens the file named 'fname' for writing the bit stream, using the 'he' header encoder.

FileCodestreamWriter(OutputStream, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Uses the output stream 'os' for writing the bit stream, using the 'he' header encoder.

FileFormatBoxes - Interface in jj2000.j2k.fileformat

This class contains all the markers used in the JPEG 2000 Part I file format

FileFormatReader - Class in jj2000.j2k.fileformat.reader

This class reads the file format wrapper that may or may not exist around a valid JPEG 2000 codestream.

FileFormatReader(RandomAccessIO, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.reader.FileFormatReader

The constructor of the FileFormatReader

FileFormatWriter - Class in jj2000.j2k.fileformat.writer

This class writes the file format wrapper that may or may not exist around a valid JPEG 2000 codestream.

FileFormatWriter(File, ImageOutputStream, int, int, int, int[], int, ColorModel, SampleModel, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.writer.FileFormatWriter

The constructor of the FileFormatWriter.

fileGroupOption(String) - Method in class loci.formats.FormatReader

fileGroupOption(String) - Method in interface loci.formats.IFormatReader

Returns an int indicating that we cannot, must, or might group the files in a given dataset.

fileGroupOption(String) - Method in class loci.formats.ImageReader

fileGroupOption(String) - Method in class loci.formats.in.AFIReader

fileGroupOption(String) - Method in class loci.formats.in.AnalyzeReader

fileGroupOption(String) - Method in class loci.formats.in.APLReader

fileGroupOption(String) - Method in class loci.formats.in.BDReader

fileGroupOption(String) - Method in class loci.formats.in.BioRadReader

fileGroupOption(String) - Method in class loci.formats.in.BrukerReader

fileGroupOption(String) - Method in class loci.formats.in.CellomicsReader

fileGroupOption(String) - Method in class loci.formats.in.CellSensReader

fileGroupOption(String) - Method in class loci.formats.in.CellVoyagerReader

fileGroupOption(String) - Method in class loci.formats.in.DicomReader

fileGroupOption(String) - Method in class loci.formats.in.FlexReader

fileGroupOption(String) - Method in class loci.formats.in.FujiReader

fileGroupOption(String) - Method in class loci.formats.in.FV1000Reader

fileGroupOption(String) - Method in class loci.formats.in.HitachiReader

fileGroupOption(String) - Method in class loci.formats.in.ICSReader

fileGroupOption(String) - Method in class loci.formats.in.ImagicReader

fileGroupOption(String) - Method in class loci.formats.in.InCellReader

fileGroupOption(String) - Method in class loci.formats.in.L2DReader

fileGroupOption(String) - Method in class loci.formats.in.LeicaReader

fileGroupOption(String) - Method in class loci.formats.in.MetamorphReader

fileGroupOption(String) - Method in class loci.formats.in.MIASReader

fileGroupOption(String) - Method in class loci.formats.in.MicromanagerReader

fileGroupOption(String) - Method in class loci.formats.in.NDPIReader

fileGroupOption(String) - Method in class loci.formats.in.NDPISReader

fileGroupOption(String) - Method in class loci.formats.in.NiftiReader

fileGroupOption(String) - Method in class loci.formats.in.NRRDReader

fileGroupOption(String) - Method in class loci.formats.in.OMETiffReader

fileGroupOption(String) - Method in class loci.formats.in.OperettaReader

fileGroupOption(String) - Method in class loci.formats.in.PerkinElmerReader

fileGroupOption(String) - Method in class loci.formats.in.PrairieReader

fileGroupOption(String) - Method in class loci.formats.in.ScanrReader

fileGroupOption(String) - Method in class loci.formats.in.ScreenReader

fileGroupOption(String) - Method in class loci.formats.in.SVSReader

fileGroupOption(String) - Method in class loci.formats.in.TCSReader

fileGroupOption(String) - Method in class loci.formats.in.TillVisionReader

fileGroupOption(String) - Method in class loci.formats.in.TrestleReader

fileGroupOption(String) - Method in class loci.formats.in.VisitechReader

fileGroupOption(String) - Method in class loci.formats.in.ZeissLSMReader

fileGroupOption(String) - Method in class loci.formats.in.ZeissTIFFReader

fileGroupOption(String) - Method in class loci.formats.ReaderWrapper

fileGroupOption(String, String[]) - Method in class loci.plugins.macro.LociFunctions

fileGUID - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

FileHandle - Class in loci.common

A wrapper for RandomAccessFile that implements the IRandomAccess interface.

FileHandle(File, String) - Constructor for class loci.common.FileHandle

Creates a random access file stream to read from, and optionally to write to, the file specified by the File argument.

FileHandle(String, String) - Constructor for class loci.common.FileHandle

Creates a random access file stream to read from, and optionally to write to, a file with the specified name.

FileHandleTest - Class in loci.tests.testng

Checks that no file handles are open after closing a reader.

FileHandleTest() - Constructor for class loci.tests.testng.FileHandleTest

FileInfo - Class in loci.formats

Encompasses basic metadata about a file.

FileInfo() - Constructor for class loci.formats.FileInfo

FILEINFO_STRING - Static variable in class loci.formats.in.KodakReader

fileLength - Variable in class loci.formats.in.LeicaReader

Length of each file name.

fileList - Variable in class loci.formats.in.DicomReader

fileListings - Static variable in class loci.common.Location

fileMap - Variable in class loci.formats.in.CellSensReader

fileName - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

The name of the current file

filename - Variable in class loci.common.NIOInputStream

The file name.

filename - Variable in class loci.formats.FileInfo

Absolute path to this file.

filename - Variable in class loci.formats.gui.ImageViewer

filename - Variable in class loci.formats.in.InCellReader.Image

filename - Variable in class loci.formats.in.MIASReader.AnalysisFile

filename - Variable in class loci.formats.in.OperettaReader.Plane

filename - Variable in class loci.formats.in.PrairieMetadata.PFile

filename attribute of this <File>.

filename - Variable in class loci.formats.in.ZeissCZIReader.Segment

filename - Variable in class loci.formats.in.ZeissTIFFReader.Plane

filename - Variable in class loci.formats.tiff.TiffSaver

Output filename.

filename - Variable in class loci.poi.hssf.dev.BiffViewer

filename - Variable in class loci.poi.hssf.dev.HSSF

filename - Variable in class loci.tests.testng.OpenBytesPerformanceTest

filename - Variable in class mdbtools.libmdb.MdbFile

filename - Variable in class ome.jxr.JXRReader

fileName - Variable in class ome.xml.model.BinaryFile

fileName - Variable in class ome.xml.model.UUID

FILENAME_FORMAT - Static variable in class loci.common.DateTools

Human readable timestamp filename string

FILENAME_FORMATTER - Static variable in class loci.common.DateTools

Human readable timestamp filename formatter.

fileNameMap - Variable in class loci.formats.in.MicromanagerReader.Position

filenames - Variable in class loci.formats.in.FV1000Reader

fileParser - Variable in class ome.jxr.JXRReader

FileParser - Class in ome.jxr.parser

Parses the first bytes of the image file and validates the extracted values for conformance with the file format specification.

FileParser(RandomAccessInputStream) - Constructor for class ome.jxr.parser.FileParser

filePart - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

filePart - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

filePart - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

FilePassRecord - Class in loci.poi.hssf.record

Title: File Pass Record

FilePassRecord() - Constructor for class loci.poi.hssf.record.FilePassRecord

FilePassRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FilePassRecord

Constructs a FILEPASS record and sets its fields appropriately.

filePath - Variable in class loci.formats.services.POIServiceImpl

FilePattern - Class in loci.formats

FilePattern is a collection of methods for handling file patterns, a way of succinctly representing a collection of files meant to be part of the same data series.

FilePattern(Location) - Constructor for class loci.formats.FilePattern

Creates a pattern object using the given file as a template.

FilePattern(String, String) - Constructor for class loci.formats.FilePattern

Creates a pattern object using the given filename and directory path as a template.

FilePattern(String) - Constructor for class loci.formats.FilePattern

Creates a pattern object for files with the given pattern string.

FilePatternBlock - Class in loci.formats

FilePatternBlock represents a single block in a FilePattern.

FilePatternBlock(String) - Constructor for class loci.formats.FilePatternBlock

FilePatternDialog - Class in loci.plugins.in

Bio-Formats Importer file pattern dialog box.

FilePatternDialog(ImportProcess) - Constructor for class loci.plugins.in.FilePatternDialog

Creates a file pattern dialog for the Bio-Formats Importer.

FilePatternReader - Class in loci.formats.in

FilePatternReader() - Constructor for class loci.formats.in.FilePatternReader

Constructs a new pattern reader.

filePosition - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

filePosition - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

fileReader - Variable in class loci.formats.gui.ImageViewer

Reader for files on disk.

files - Variable in class loci.formats.FilePattern

File listing for this file pattern.

files - Variable in class loci.formats.FileStitcher.ExternalSeries

files - Variable in class loci.formats.in.CellomicsReader

files - Variable in class loci.formats.in.HamamatsuVMSReader

files - Variable in class loci.formats.in.ImprovisionTiffReader

files - Variable in class loci.formats.in.LeicaReader

Array of image file names.

files - Variable in class loci.formats.in.MetamorphTiffReader

files - Variable in class loci.formats.in.PerkinElmerReader

List of files to open.

files - Variable in class loci.formats.in.PrairieMetadata.Frame

<File> elements beneath this <Frame>, keyed on each file's channel.

files - Variable in class loci.formats.in.SlidebookTiffReader

files - Variable in class loci.formats.in.TrestleReader

files - Variable in class loci.formats.in.VarianFDFReader

files - Variable in class loci.formats.in.VisitechReader

Files in this dataset.

files - Variable in class loci.formats.in.ZeissZVIReader

files - Variable in class loci.formats.services.POIServiceImpl

fileSave - Variable in class loci.formats.gui.ImageViewer

fileShare - Variable in class loci.poi.hssf.model.Workbook

FileSharingRecord - Class in loci.poi.hssf.record

Title: FileSharing

FileSharingRecord() - Constructor for class loci.poi.hssf.record.FileSharingRecord

FileSharingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FileSharingRecord

Constructs a FileSharing record and sets its fields appropriately.

fileSize - Variable in class ome.jxr.parser.FileParser

fileSizeInBytes - Variable in class ome.jxr.ifd.IFDMetadata

fileSizes - Variable in class loci.formats.services.POIServiceImpl

FileStitcher - Class in loci.formats

Logic to stitch together files with similar names.

FileStitcher() - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher around a new image reader.

FileStitcher(boolean) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher around a new image reader.

FileStitcher(IFormatReader) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher with the given reader.

FileStitcher(IFormatReader, boolean) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher with the given reader.

fileStitcher - Variable in class loci.plugins.in.ImportProcess

FileStitcher.ExternalSeries - Class in loci.formats

FileStitcher.ExternalSeries(FilePattern) - Constructor for class loci.formats.FileStitcher.ExternalSeries

fileSystem - Variable in class loci.formats.services.POIServiceImpl

filesystem - Variable in class loci.poi.POIDocument

The open POIFS FileSystem that contains our document

filetimeToDate(int, int) - Static method in class loci.poi.hpsf.Util

Converts a Windows FILETIME into a Date.

filetimeToDate(long) - Static method in class loci.poi.hpsf.Util

Converts a Windows FILETIME into a Date.

FileTypeBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a File Type Box of JPEG JP2 file format.

FileTypeBox(int, int, int[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from the provided brand, minor version and compatibility list.

FileTypeBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from the provided byte array.

FileTypeBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from org.w3c.dom.Node.

fileView - Variable in class loci.formats.gui.ImageViewer

fileWriter - Variable in class loci.formats.gui.ImageViewer

Writer for files on disk.

fill(Location) - Method in class loci.common.CaseInsensitiveLocation.Cache

Fill the cache with the content for the specified directory.

fill() - Method in class loci.plugins.util.RecordedImageProcessor

fill(ImageProcessor) - Method in class loci.plugins.util.RecordedImageProcessor

FILL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

fill(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fill(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fill(List, int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

fill out a List of SmallDocumentBlocks so that it fully occupies a set of big blocks

fill3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

FILL__ANGLE - Static variable in class loci.poi.ddf.EscherProperties

FILL__BACKOPACITY - Static variable in class loci.poi.ddf.EscherProperties

FILL__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties

FILL__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties

FILL__CRMOD - Static variable in class loci.poi.ddf.EscherProperties

FILL__DZTYPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLBACKCOLOR - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLCOLOR - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLED - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLOPACITY - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLTYPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__FOCUS - Static variable in class loci.poi.ddf.EscherProperties

FILL__HEIGHT - Static variable in class loci.poi.ddf.EscherProperties

FILL__HITTESTFILL - Static variable in class loci.poi.ddf.EscherProperties

FILL__NOFILLHITTEST - Static variable in class loci.poi.ddf.EscherProperties

FILL__ORIGINX - Static variable in class loci.poi.ddf.EscherProperties

FILL__ORIGINY - Static variable in class loci.poi.ddf.EscherProperties

FILL__PATTERNTEXTURE - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTLEFT - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTRIGHT - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTTOP - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHADECOLORS - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHADEPRESET - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHADETYPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHAPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHAPEORIGINX - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHAPEORIGINY - Static variable in class loci.poi.ddf.EscherProperties

FILL__TOBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

FILL__TOLEFT - Static variable in class loci.poi.ddf.EscherProperties

FILL__TORIGHT - Static variable in class loci.poi.ddf.EscherProperties

FILL__TOTOP - Static variable in class loci.poi.ddf.EscherProperties

FILL__USERECT - Static variable in class loci.poi.ddf.EscherProperties

FILL__WIDTH - Static variable in class loci.poi.ddf.EscherProperties

FILL_ORDER - Static variable in class loci.formats.tiff.IFD

FILL_ORDER_LEFT_TO_RIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "FillOrder" tag.

FILL_ORDER_RIGHT_TO_LEFT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "FillOrder" tag.

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fillArray(int, int[], int) - Method in class loci.poi.util.IntList

fillBasedOnBands(int, boolean, short[], short[], short[]) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Fills the channel definitions into the arrays based on the number of components and isPremultiplied.

fillBits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

EOL padding flag: 1 if fill bits have been added before an EOL such that the EOL ends on a byte boundary, 0 otherwise.

fillColor - Variable in class loci.poi.hssf.usermodel.HSSFShape

fillColor - Variable in class ome.xml.model.Shape

fillColour - Variable in class loci.formats.in.BaseZeissReader.Shape

filled - Variable in class loci.formats.ChannelFiller

Whether to fill in the indices.

fillExposureTime(MetadataStore) - Method in class loci.formats.in.FakeReader

fillField(RecordInputStream) - Method in interface loci.poi.hssf.record.CustomField

Populates this fields data from the byte array passed in.

fillField(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataFormulaField

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBitmapBlip

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipWMFRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBSERecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherChildAnchorRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientAnchorRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientDataRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherContainerRecord

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDggRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDgRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherMetafileBlip

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherOptRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherPictBlip

This method deserializes the record from a byte array.

fillFields(byte[], EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord

Delegates to fillFields(byte[], int, EscherRecordFactory)

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord

The contract of this method is to deserialize an escher record including it's children.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpgrRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherTextboxRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.UnknownEscherRecord

This method deserializes the record from a byte array.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisLineFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisOptionsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisParentRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisUsedRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BackupRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BarRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BeginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BlankRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BOFRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BookBoolRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoolErrRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BottomMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoundSheetRecord

UTF8: sid + len + bof + flags + len(str) + unicode + str 2 + 2 + 4 + 2 + 1 + 1 + len(str) UNICODE: sid + len + bof + flags + len(str) + unicode + str 2 + 2 + 4 + 2 + 1 + 1 + 2 * len(str)

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcCountRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcModeRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CodepageRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ColumnInfoRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ContinueRecord

Fill the fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CountryRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DataFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DateWindow1904Record

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DBCellRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultColWidthRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DeltaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DimensionsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DrawingRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DSFRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EOFRecord

fillFields(byte[], short, int) - Method in class loci.poi.hssf.record.EscherAggregate

Unused since this is an aggregate record.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FilePassRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FileSharingRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FnGroupCountRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontBasisRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FooterRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormulaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FrameRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GridsetRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GutsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HCenterRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HeaderRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HideObjRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceEndRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceHdrRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IterationRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelSSTRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LeftMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LegendRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LineFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MergeCellsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MMSRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulBlankRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulRKRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NameRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteRecord

Read the record data from the supplied RecordInputStream

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Read the record data from the supplied RecordInputStream

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectLinkRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PageBreakRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaletteRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaneRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRev4Record

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotAreaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotGrowthRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrecisionRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintGridlinesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintHeadersRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintSetupRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectionRev4Record

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RecalcIdRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.Record

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefModeRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefreshAllRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RightMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RKRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RowRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SaveRecalcRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ScenarioProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SCLRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SelectionRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesListRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesTextRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SharedFormulaRecord

Shared formulas are to treated like unknown records, and as a result d

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SSTRecord

Fill the fields from the data

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StringRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StyleRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SupBookRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TabIdRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TickRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TopMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnicodeString

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnitsRecord

fillFields(byte[], short) - Method in class loci.poi.hssf.record.UnknownRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnknownRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UseSelFSRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ValueRangeRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.VCenterRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowOneRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowTwoRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteAccessRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WSBoolRecord

fillInData() - Method in class loci.formats.in.ZeissCZIReader.Attachment

fillInData() - Method in class loci.formats.in.ZeissCZIReader.AttachmentDirectory

fillInData() - Method in class loci.formats.in.ZeissCZIReader.Directory

fillInData() - Method in class loci.formats.in.ZeissCZIReader.FileHeader

fillInData() - Method in class loci.formats.in.ZeissCZIReader.Metadata

fillInData() - Method in class loci.formats.in.ZeissCZIReader.Segment

fillInData() - Method in class loci.formats.in.ZeissCZIReader.SubBlock

fillInIFD(IFD) - Method in class loci.formats.tiff.TiffParser

Fill in IFD entries that are stored at an arbitrary offset.

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader

fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

fillMetadataPass4(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

fillMetadataPass6(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass7(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Store basic dimensions in model

fillOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

The logical order of bits within a byte.

fillOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fillPhysicalSizes(MetadataStore) - Method in class loci.formats.in.FakeReader

fillPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor

fillPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

Fills a (closed) polygon, as defined by a pair of arrays, which hold the x and y coordinates.

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

Fills a (closed) polygon, as defined by a pair of arrays, which hold the x and y coordinates.

fillPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Retrives precincts and code-blocks coordinates in the given resolution, level and component.

fillPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Retrives precincts and code-blocks coordinates in the given resolution, component and tile.

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

FillRule - Enum in ome.xml.model.enums

FillRule(String) - Constructor for enum ome.xml.model.enums.FillRule

fillRule - Variable in class ome.xml.model.Shape

FillRuleEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FillRule.

FillRuleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FillRuleEnumHandler

fillStyle - Variable in class loci.formats.in.BaseZeissReader.Shape

fillval - Variable in class loci.poi.util.IntList

filter - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies which filters to use for the specified tile-components.

filter(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor.JPEGSPIFilter

filter - Variable in class loci.formats.in.ZeissLSMReader.BeamSplitter

filter - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

filter(int) - Method in class loci.plugins.util.RecordedImageProcessor

filter - Variable in class ome.xml.meta.FilterMetadata

Is filtering enabled?

Filter - Class in ome.xml.model

Filter() - Constructor for class ome.xml.model.Filter

Default constructor.

Filter(Element, OMEModel) - Constructor for class ome.xml.model.Filter

Constructs Filter recursively from an XML DOM tree.

Filter(Filter) - Constructor for class ome.xml.model.Filter

Copy constructor.

filter$(String) - Method in class loci.poi.hssf.util.RangeAddress

FILTER_53 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The filter for lossless compression.

FILTER_97 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The filter for lossy compression.

FILTER_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "component default" specified filters

FILTER_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "main default" specified filters

FILTER_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "tile and component specific" specified filters

FILTER_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "tile specific default" specified filters

FILTER_TYPE - Static variable in class ome.specification.XMLMockObjects

The default objective's immersion.

FilterData - Class in mdbtools.dbengine.tasks

filter a given result set by a given constraint

FilterData(Task, Object, int[]) - Constructor for class mdbtools.dbengine.tasks.FilterData

filterLinks - Variable in class ome.xml.model.Annotation

filterMap - Variable in class loci.formats.in.FlexReader

filterMetadata - Variable in class loci.formats.FormatReader

Whether or not to filter out invalid metadata.

FilterMetadata - Class in loci.formats.meta

FilterMetadata(MetadataStore, boolean) - Constructor for class loci.formats.meta.FilterMetadata

FilterMetadata - Class in ome.xml.meta

An implementation of MetadataStore that removes unprintable characters from metadata values before storing them in a delegate MetadataStore.

FilterMetadata(MetadataStore, boolean) - Constructor for class ome.xml.meta.FilterMetadata

Creates a new instance.

filterModels - Variable in class loci.formats.in.LIFReader

filterModels - Variable in class loci.formats.in.NikonTiffReader

FilterRef - Class in ome.xml.model

FilterRef() - Constructor for class ome.xml.model.FilterRef

Default constructor.

FilterRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterRef

Constructs FilterRef recursively from an XML DOM tree.

FilterRef(FilterRef) - Constructor for class ome.xml.model.FilterRef

Copy constructor.

filterRefPopulated - Variable in class loci.formats.in.LeicaReader

filters - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies which filters to use for the specified tile-components.

filters - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

Wavelet filters for all components and tiles

filters - Variable in class ome.xml.model.Instrument

filterSet - Variable in class loci.formats.in.FlexReader.FlexHandler

FILTERSET - Static variable in class loci.formats.in.LeicaReader

filterSet - Variable in class loci.formats.in.ZeissLSMReader.BeamSplitter

filterSet - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

filterSet - Variable in class ome.xml.model.Channel

FilterSet - Class in ome.xml.model

FilterSet() - Constructor for class ome.xml.model.FilterSet

Default constructor.

FilterSet(Element, OMEModel) - Constructor for class ome.xml.model.FilterSet

Constructs FilterSet recursively from an XML DOM tree.

FilterSet(FilterSet) - Constructor for class ome.xml.model.FilterSet

Copy constructor.

filterSetEmissionFilterLinks - Variable in class ome.xml.model.Filter

filterSetExcitationFilterLinks - Variable in class ome.xml.model.Filter

filterSetMap - Variable in class loci.formats.in.FlexReader

filterSetRef - Variable in class loci.formats.in.ZeissCZIReader.Channel

FilterSetRef - Class in ome.xml.model

FilterSetRef() - Constructor for class ome.xml.model.FilterSetRef

Default constructor.

FilterSetRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterSetRef

Constructs FilterSetRef recursively from an XML DOM tree.

FilterSetRef(FilterSetRef) - Constructor for class ome.xml.model.FilterSetRef

Copy constructor.

filterSets - Variable in class loci.formats.in.FlexReader

filterSets - Variable in class ome.xml.model.Dichroic

filterSets - Variable in class ome.xml.model.Instrument

FilterType - Enum in ome.xml.model.enums

FilterType(String) - Constructor for enum ome.xml.model.enums.FilterType

FilterTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FilterType.

FilterTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilterTypeEnumHandler

FilterTypes - Interface in jj2000.j2k.wavelet

This interface defines the identifiers for the different types of filters that are supported.

filterWheel - Variable in class ome.xml.model.Filter

filterWheelName - Variable in class loci.formats.in.LeicaHandler

filts - Variable in class loci.formats.gui.ComboFileFilter

List of filters to be combined.

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

finalize() - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Prints the timing information, if collected, and calls 'finalize' on the super class.

finalize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Prints the timing information, if collected, and calls 'finalize' on the super class.

finalize() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Prints the timing information, if collected, and calls 'finalize' on the super class.

finalize() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

finalize() - Method in class org.libjpegturbo.turbojpeg.TJCompressor

finalize() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

find(String[]) - Method in class loci.formats.in.PrairieReader

Finds the first file with one of the given suffixes.

find(String, String) - Static method in class loci.plugins.Updater

findAllIFDs() - Method in class ome.jxr.parser.IFDParser

findBiggest(int[]) - Method in class loci.poi.hssf.usermodel.EscherGraphics

findById(byte[]) - Static method in enum ome.jxr.ifd.PixelFormat

findById(int) - Static method in enum ome.jxr.image.BitDepth

findById(int) - Static method in enum ome.jxr.image.ComponentMode

findById(int) - Static method in enum ome.jxr.image.FrequencyBand

findById(int) - Static method in enum ome.jxr.image.InternalColorFormat

findById(int) - Static method in enum ome.jxr.image.OutputColorFormat

findByTag(short) - Static method in enum ome.jxr.ifd.IFDEntry

findByTypeCode(short) - Static method in enum ome.jxr.ifd.IFDEntryType

findCaseInsensitive(Location) - Static method in class loci.common.CaseInsensitiveLocation

findCellComment(Sheet, int, int) - Static method in class loci.poi.hssf.usermodel.HSSFCell

Cell comment finder.

FindCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

findChildWithID(Node, String, String) - Method in class loci.formats.services.OMEXMLServiceImpl

Return the child node with specified value for the "ID" attribute.

findClientData(EscherContainerRecord) - Method in class loci.poi.hssf.record.EscherAggregate

findColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Finds the first occurance of a given color

findColorIndex(PaletteBuilder.ColorNode, Color) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

findColumnIdx(int, int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

findColumnName(String) - Method in class mdbtools.tests.ColumnTest

findColumnType(String, String) - Method in class mdbtools.tests.ColumnTest

findDifferent(int, int) - Method in class mdbtools.dbengine.MemoryData

findEdges() - Method in class loci.plugins.util.RecordedImageProcessor

findEndOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

findEndOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

findExistingRowColHeaderNameRecord(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

findExistingRowColHeaderNameRecordIdx(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

findFiles(Location) - Method in class loci.formats.in.FlexReader

Search for files that correspond to the given file.

findFiles(Location, String[]) - Method in class loci.formats.in.FlexReader

findFirstCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

used internally to refresh the "first cell" when the first cell is removed.

findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Sheet

Returns the first occurance of a record matching a particular sid.

findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Workbook

Returns the first occurance of a record matching a particular sid.

findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Sheet

Finds the first occurance of a record matching a particular sid and returns it's position.

findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Workbook

Returns the index of a record matching a particular sid.

findFirstRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

used internally to refresh the "first row" when the first row is removed.

findFont(short, short, short, String, boolean, boolean, short, byte) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Finds a font that matches the one with the supplied attributes

findFormatRunAt(int) - Method in class loci.poi.hssf.record.UnicodeString

findFreeSPIDBlock() - Method in class loci.poi.hssf.model.DrawingManager

findFreeSPIDBlock() - Method in class loci.poi.hssf.model.DrawingManager2

findImages(RandomAccessInputStream) - Method in class loci.formats.in.TillVisionReader

findKeyValue(String[], String[][]) - Method in class loci.formats.in.ICSReader

findKeyValueForCategory(String[], String[][]) - Method in class loci.formats.in.ICSReader

findKeyValueOther(String[], String[][]) - Method in class loci.formats.in.ICSReader

findLastCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

used internally to refresh the "last cell" when the last cell is removed.

findLastRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

used internally to refresh the "last row" when the last row is removed.

findLEIFile(String) - Method in class loci.formats.in.LeicaReader

Find the .lei file that belongs to the same dataset as the given file.

findLogFiles() - Method in class loci.formats.in.DeltavisionReader

Find the log files.

findLogFiles() - Method in class loci.formats.in.FakeReader

findMetadataFiles() - Method in class loci.formats.in.PrairieReader

findNewDrawingGroupId() - Method in class loci.poi.hssf.model.DrawingManager

findNewDrawingGroupId() - Method in class loci.poi.hssf.model.DrawingManager2

findNext() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

findNext() - Method in class loci.poi.hssf.usermodel.HSSFRow.CellIterator

findNextBlock() - Method in class loci.formats.in.OpenlabReader

findNextLine() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

findNextOffset(RandomAccessInputStream) - Method in class loci.formats.in.TillVisionReader

findNextOffset(RandomAccessInputStream, byte[]) - Method in class loci.formats.in.TillVisionReader

findNextRecordBySid(short, int) - Method in class loci.poi.hssf.model.Workbook

Returns the next occurance of a record matching a particular sid.

findNode(String, boolean, String) - Method in class loci.tests.testng.ConfigurationTree

Gets the tree node associated with the given file.

findOffset() - Method in class loci.formats.in.ImspectorReader

Find the offset to the next block of pixel data.

findOffset(boolean) - Method in class loci.formats.in.ImspectorReader

findOIFFile(String) - Method in class loci.formats.in.FV1000Reader

findPaletteEntry(PaletteBuilder.ColorNode, int, byte[], byte[], byte[]) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

findPattern(String) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(Location) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(File) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String, String[]) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String, String[], int[]) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String[]) - Static method in class loci.formats.FilePattern

Generate a pattern from a list of file names.

findPattern(String, String[], int, int, String) - Static method in class loci.formats.FilePattern

Recursive method for parsing a fixed-width numerical block.

findPattern(String) - Method in class loci.formats.FileStitcher

findPatterns(String) - Method in class loci.formats.FileStitcher

Finds the file pattern for the given ID, based on the state of the file stitcher.

findPixelOffsets() - Method in class loci.formats.in.JPXReader

findPixelsOffset(int) - Method in class loci.formats.in.VisitechReader

findRootNode(Node) - Method in class loci.formats.services.OMEXMLServiceImpl

Return the absolute root node for the specified child node.

findSeriesPatterns(String) - Static method in class loci.formats.FilePattern

findSeriesPatterns(String, String, String[]) - Static method in class loci.formats.FilePattern

findSheetNameFromExternSheet(short) - Method in class loci.poi.hssf.model.Workbook

finds the sheet name by his extern sheet index

findSimilarColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Finds the closest matching color in the custom palette.

findSmallest(int[]) - Method in class loci.poi.hssf.usermodel.EscherGraphics

findStartOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

findStartOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

findString(String...) - Method in class loci.common.NIOInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class loci.common.NIOInputStream

Reads or skips a string ending with one of the given terminating substrings.

findString(int, String...) - Method in class loci.common.NIOInputStream

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class loci.common.NIOInputStream

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(String...) - Method in class loci.common.RandomAccessInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class loci.common.RandomAccessInputStream

Reads or skips a string ending with one of the given terminating substrings.

findString(int, String...) - Method in class loci.common.RandomAccessInputStream

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class loci.common.RandomAccessInputStream

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(String) - Method in class loci.formats.in.KodakReader

findStringValue(int, String) - Method in class mdbtools.tests.ColumnTest

findTableIndex(Table, Table[]) - Method in class mdbtools.dbengine.SelectEngine

findTIFFs() - Method in class loci.formats.in.MetamorphTiffReader

findTruncIndices(int, int, int, int, SubbandAn, float, int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

This function finds the new truncation points indices for a packet.

FINE_DOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

FINE_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Small fine dots

finish(ImportProcess) - Method in class loci.plugins.in.Importer

finishedTileComponent - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

A flag indicating for each component if all the code-blocks of the * current tile have been returned.

finishLengthCalculation(int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

Terminates the calculation of the required length for each coding pass.

finishTime - Variable in class loci.formats.in.PerkinElmerReader

finishTiming() - Method in class loci.plugins.in.ImagePlusReader

FIRMWARE_VERSION - Static variable in class loci.formats.in.NikonReader

first - Variable in class loci.common.xml.ValidationSAXHandler

FIRST_BYPASS_PASS_IDX - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The index of the first "raw" pass, if bypass mode is on.

FIRST_CODE - Static variable in class loci.formats.codec.LZWCodec

FIRST_COLOR_INDEX - Static variable in class loci.poi.hssf.record.PaletteRecord

The byte index of the first color

first_data_pg - Variable in class mdbtools.libmdb.MdbTableDef

firstAvailable(int...) - Method in class loci.plugins.in.SwapDialog

firstC - Variable in class ome.xml.model.TiffData

firstcell - Variable in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

firstDataStream - Variable in class loci.formats.tools.AmiraParameters

firstFile - Variable in class loci.formats.in.PrairieMetadata.Frame

The first actual <File> element for this <Frame>.

firstFrame - Variable in class loci.formats.in.PrairieMetadata.Sequence

The first actual <Frame> element for this <Sequence>.

firstIFD - Variable in class loci.formats.tiff.TiffParser

Cached first IFD in the current file.

firstIndex - Variable in class loci.formats.in.PerkinElmerReader.PixelsFile

firstLowBit(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

firstName - Variable in class ome.xml.model.Experimenter

firstPackOff - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Offset of the first packet in each tile-part in each tile

firstrow - Variable in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

firstrow - Variable in class loci.poi.hssf.usermodel.HSSFSheet

firstSequence - Variable in class loci.formats.in.PrairieMetadata

The first actual <Sequence> element.

firstSeriesChannels - Variable in class loci.formats.in.MetamorphReader

firstStamp - Variable in class loci.formats.in.LeicaHandler

firstT - Variable in class ome.xml.model.TiffData

firstTilePartHeadLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

First tile part header length

firstTimeLoop - Variable in class loci.formats.in.ND2Handler

firstWellPlanes() - Method in class loci.formats.in.FlexReader

Returns the number of planes in the first well that has data.

firstZ - Variable in class ome.xml.model.TiffData

fis - Variable in class loci.formats.Memoizer.KryoDeser

FitsReader - Class in loci.formats.in

FitsReader is the file format reader for Flexible Image Transport System (FITS) images.

FitsReader() - Constructor for class loci.formats.in.FitsReader

Constructs a new FitsReader.

fittopage - Static variable in class loci.poi.hssf.record.WSBoolRecord

fixed - Variable in class loci.formats.FilePatternBlock

Whether or not this is a fixed-width block.

FIXED_SIZE - Static variable in class loci.poi.ddf.EscherArrayProperty

The size of the header that goes at the start of the array, before the data

FixedField - Interface in loci.poi.util

behavior of a field at a fixed location within a byte array

fixTabIdRecord() - Method in class loci.poi.hssf.model.Workbook

make the tabid record look like the current situation.

FL - Static variable in class loci.formats.in.DicomReader

FLAG_ACCURATEDCT - Static variable in class org.libjpegturbo.turbojpeg.TJ

Use the most accurate DCT/IDCT algorithm available in the underlying codec.

FLAG_BACKGROUND - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_BOTTOMUP - Static variable in class org.libjpegturbo.turbojpeg.TJ

The uncompressed source/destination image is stored in bottom-up (Windows, OpenGL) order, not top-down (X11) order.

FLAG_CHILD - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_CONNECTOR - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_DELETED - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_FASTDCT - Static variable in class org.libjpegturbo.turbojpeg.TJ

Use the fastest DCT/IDCT algorithm available in the underlying codec.

FLAG_FASTUPSAMPLE - Static variable in class org.libjpegturbo.turbojpeg.TJ

When decompressing, use the fastest chrominance upsampling algorithm available in the underlying codec.

FLAG_FLIPHORIZ - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_FLIPVERT - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_FORCEMMX - Static variable in class org.libjpegturbo.turbojpeg.TJ

Turn off CPU auto-detection and force TurboJPEG to use MMX code (if the underlying codec supports it.)

FLAG_FORCESSE - Static variable in class org.libjpegturbo.turbojpeg.TJ

Turn off CPU auto-detection and force TurboJPEG to use SSE code (if the underlying codec supports it.)

FLAG_FORCESSE2 - Static variable in class org.libjpegturbo.turbojpeg.TJ

Turn off CPU auto-detection and force TurboJPEG to use SSE2 code (if the underlying codec supports it.)

FLAG_FORCESSE3 - Static variable in class org.libjpegturbo.turbojpeg.TJ

Turn off CPU auto-detection and force TurboJPEG to use SSE3 code (if the underlying codec supports it.)

FLAG_GROUP - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_HASSHAPETYPE - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_HAVEANCHOR - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_HAVEMASTER - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_OLESHAPE - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_PATRIARCH - Static variable in class loci.poi.ddf.EscherSpRecord

flags - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

flags - Variable in class loci.formats.in.BaseZeissReader.Layer

flags - Variable in class loci.formats.in.SDTInfo

Scan clocks bits 2-0 (frame, line, pixel), rates_read - bit 15.

FLASH - Static variable in class loci.formats.tiff.IFD

FLASH_COMPENSATION - Static variable in class loci.formats.in.NikonReader

FLASH_DID_NOT_FIRE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash did not fire.

FLASH_ENERGY - Static variable in class loci.formats.tiff.IFD

FLASH_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash fired, but the strobe return status is unknown.

FLASH_MASK_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating that the flash fired.

FLASH_MASK_FUNCTION_NOT_PRESENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating no flash function present.

FLASH_MASK_MODE_AUTO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating auto mode.

FLASH_MASK_MODE_FLASH_FIRING - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating compulsory flash firing mode.

FLASH_MASK_MODE_FLASH_SUPPRESSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating compulsory flash suppression mode.

FLASH_MASK_RED_EYE_REDUCTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating red-eye reduction supported.

FLASH_MASK_RETURN_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating strobe return light detected.

FLASH_MASK_RETURN_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating strobe return light not detected.

FLASH_MODE - Static variable in class loci.formats.in.NikonReader

FLASH_PIX_VERSION - Static variable in class loci.formats.tiff.IFD

FLASH_SETTING - Static variable in class loci.formats.in.NikonReader

FLASH_STROBE_RETURN_LIGHT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash fired, and the strobe return light was detected.

FLASH_STROBE_RETURN_LIGHT_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash fired, but the strobe return light was not detected.

FLASH_USED - Static variable in class loci.formats.in.NikonReader

flattenArrays(Object[]) - Method in class loci.poi.util.POILogger

Flattens any contained objects.

flattenedResolutions - Variable in class loci.formats.FormatReader

Whether or not resolutions are flattened.

flattenHashtables() - Method in class loci.formats.FormatReader

Call FormatReader.updateMetadataLists(Hashtable) on all metadata hashtables.

flattenIntoHashMap() - Method in class loci.common.IniList

Flattens all of the INI tables into a single HashMap whose keys are of the format "[table name] table key".

flbckX - Variable in class loci.formats.in.SDTInfo

flbckY - Variable in class loci.formats.in.SDTInfo

FLEX - Static variable in class loci.formats.in.FlexReader

Custom IFD entry for Flex XML.

flex - Variable in class loci.formats.in.FlexReader.MeaHandler

FLEX_SUFFIX - Static variable in class loci.formats.in.FlexReader

flexFiles - Variable in class loci.formats.in.FlexReader

FlexReader - Class in loci.formats.in

FlexReader is a file format reader for Evotec Flex files.

FlexReader() - Constructor for class loci.formats.in.FlexReader

Constructs a new Flex reader.

FlexReader.FilterGroup - Class in loci.formats.in

Stores a grouping of filters.

FlexReader.FilterGroup() - Constructor for class loci.formats.in.FlexReader.FilterGroup

FlexReader.FlexFile - Class in loci.formats.in

FlexReader.FlexFile() - Constructor for class loci.formats.in.FlexReader.FlexFile

FlexReader.FlexHandler - Class in loci.formats.in

SAX handler for parsing XML.

FlexReader.FlexHandler(List<String>, List<String>, MetadataStore, boolean, int, int) - Constructor for class loci.formats.in.FlexReader.FlexHandler

FlexReader.MeaHandler - Class in loci.formats.in

SAX handler for parsing XML from .mea files.

FlexReader.MeaHandler() - Constructor for class loci.formats.in.FlexReader.MeaHandler

FlexReader.ResHandler - Class in loci.formats.in

SAX handler for parsing XML from .res files.

FlexReader.ResHandler() - Constructor for class loci.formats.in.FlexReader.ResHandler

FlexWidgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats Flex support.

FlexWidgets() - Constructor for class loci.plugins.config.FlexWidgets

FLIM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the fluorescence-lifetime domain.

flip - Variable in class loci.formats.in.NativeQTReader

flipHorizontal() - Method in class loci.plugins.util.RecordedImageProcessor

flipTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

flipTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor

Table for flipping bytes from LSB-to-MSB to MSB-to-LSB.

flipVertical() - Method in class loci.plugins.util.RecordedImageProcessor

FLOAT - Static variable in class loci.formats.FormatTools

Identifies the FLOAT data type used to store pixel values.

FLOAT - Static variable in class loci.formats.in.CellSensReader

FLOAT - Static variable in class loci.formats.in.GatanReader

FLOAT_ABS_PRECISION - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The precision for float data type, in an absolute sense.

FLOAT_REL_PRECISION - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The relative precision for float data.

floatsToBytes(float[], boolean) - Static method in class loci.common.DataTools

Translates an array of float values into an array of byte values.

floatToBytes(float, boolean) - Static method in class loci.common.DataTools

Translates the float value into an array of four bytes.

floatValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a float.

FLOW_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created automatically in Continuous Flow mode measurement (no setup, only data).

FlowSightReader - Class in loci.formats.in

FlowSightReader() - Constructor for class loci.formats.in.FlowSightReader

fluor - Variable in class loci.formats.in.ZeissCZIReader.Channel

fluor - Variable in class ome.xml.model.Channel

FLUOVIEW_MAGIC_STRING - Static variable in class loci.formats.in.FluoviewReader

String identifying a Fluoview file.

FluoviewReader - Class in loci.formats.in

FluoviewReader is the file format reader for Olympus Fluoview TIFF files AND Andor Bio-imaging Division (ABD) TIFF files.

FluoviewReader() - Constructor for class loci.formats.in.FluoviewReader

Constructs a new Fluoview TIFF reader.

flush() - Method in class com.sun.media.imageio.stream.RawImageInputStream

flush() - Method in class com.sun.media.imageioimpl.common.BitFile

flush() - Method in class com.sun.media.imageioimpl.common.LZWCompressor

Indicate to compressor that no more data to go so write out any remaining buffered data.

flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

A null operation as writing is not supported.

flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

flush() - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput

Flushes (i.e.

flush() - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput

Writes the contents of the bit buffer and byte aligns the output by filling bits with an alternating sequence of 0's and 1's.

flush() - Method in interface jj2000.j2k.io.BinaryDataOutput

Any data that has been buffered must be written, and the stream should be realigned at the byte level.

flush() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Any data that has been buffered must be written (including buffering at the bit level), and the stream should be realigned at the byte level.

flush() - Method in class jj2000.j2k.util.ISRandomAccessIO

Does nothing since this class does not implement data output.

flush() - Method in interface jj2000.j2k.util.MsgLogger

Writes any buffered data from the println() method to the device.

flush() - Method in class jj2000.j2k.util.StreamMsgLogger

Writes any buffered data from the print() and println() methods to the device.

flush() - Method in class loci.common.RandomAccessOutputStream

flush() - Method in class loci.plugins.config.TextAreaWriter

Flushing a TextAreaWriter does nothing .

flush() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Flushes this output stream and forces any buffered output bytes to be written out.

flushBefore(long) - Method in class com.sun.media.imageio.stream.RawImageInputStream

flushBuffer() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Write to the FileChannel any remaining bytes in the byte output buffer.

FM - Static variable in class ome.units.UNITS

FM_LOSSLESS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Distortion estimation lookup table for bits coded using the magnitude-refinement (MR) primative, for lossless coding and last bit-plane.

FM_LOSSY - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Distortion estimation lookup table for bits coded using the magnitude-refinement (MR) primative, for lossy coding (i.e.

fmt - Variable in class loci.formats.in.GelReader

fmt - Variable in class loci.formats.in.OpenlabReader

fmt - Variable in class mdbtools.libmdb.MdbHandle

FnGroupCountRecord - Class in loci.poi.hssf.record

Title: Function Group Count Record

FnGroupCountRecord() - Constructor for class loci.poi.hssf.record.FnGroupCountRecord

FnGroupCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FnGroupCountRecord

Constructs a FnGroupCount record and sets its fields appropriately.

FOCAL_LENGTH - Static variable in class loci.formats.tiff.IFD

FOCAL_LENGTH_35MM_FILM - Static variable in class loci.formats.tiff.IFD

FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class loci.formats.tiff.IFD

FOCAL_PLANE_RESOLUTION_UNIT_CENTIMETER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneXResolution" tag.

FOCAL_PLANE_RESOLUTION_UNIT_INCH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneXResolution" tag.

FOCAL_PLANE_RESOLUTION_UNIT_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneResolutionUnit" tag.

FOCAL_PLANE_X_RESOLUTION - Static variable in class loci.formats.tiff.IFD

FOCAL_PLANE_Y_RESOLUTION - Static variable in class loci.formats.tiff.IFD

FOCUS_IMAGE - Static variable in class loci.formats.in.CellSensReader

FOCUS_MODE - Static variable in class loci.formats.in.NikonReader

focusGained(FocusEvent) - Method in class loci.plugins.in.MainDialog

Handles information pane updates when component focus changes.

focusLost(FocusEvent) - Method in class loci.plugins.in.MainDialog

font - Variable in class loci.formats.tools.MakeTestOmeTiff.TextLine

font - Variable in class loci.poi.hssf.usermodel.EscherGraphics

font - Variable in class loci.poi.hssf.usermodel.HSSFFont

font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string that represents the change in font.

font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string that represents the change in font.

FONT_ARIAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Arial font

FontBasisRecord - Class in loci.poi.hssf.record

The font basis record stores various font metrics.

FontBasisRecord() - Constructor for class loci.poi.hssf.record.FontBasisRecord

FontBasisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontBasisRecord

Constructs a FontBasis record and sets its fields appropriately.

FontDetails - Class in loci.poi.hssf.usermodel

Stores width and height details about a font.

FontDetails(String, int) - Constructor for class loci.poi.hssf.usermodel.FontDetails

Construct the font details with the given name and height.

fontDetailsMap - Static variable in class loci.poi.hssf.usermodel.StaticFontMetrics

Our cache of font details we've already looked up

FontFamily - Enum in ome.xml.model.enums

FontFamily(String) - Constructor for enum ome.xml.model.enums.FontFamily

fontFamily - Variable in class ome.xml.model.Shape

FontFamilyEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FontFamily.

FontFamilyEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontFamilyEnumHandler

fontIndex - Variable in class loci.poi.hssf.record.UnicodeString.FormatRun

FontIndexRecord - Class in loci.poi.hssf.record

The font index record indexes into the font table for the text record.

FontIndexRecord() - Constructor for class loci.poi.hssf.record.FontIndexRecord

FontIndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontIndexRecord

Constructs a FontIndex record and sets its fields appropriately.

fontMetricsProps - Static variable in class loci.poi.hssf.usermodel.StaticFontMetrics

The font metrics property file we're using

fontName - Variable in class loci.formats.in.BaseZeissReader.Shape

fontName - Variable in class loci.formats.in.LeicaHandler.ROI

fontName - Variable in class loci.formats.in.LIFReader.ROI

fontName - Variable in class loci.poi.hssf.usermodel.FontDetails

fontpos - Variable in class loci.poi.hssf.model.WorkbookRecordList

FontRecord - Class in loci.poi.hssf.record

Title: Font Record - descrbes a font in the workbook (index = 0-3,5-infinity - skip 4)

FontRecord() - Constructor for class loci.poi.hssf.record.FontRecord

FontRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontRecord

Constructs a Font record and sets its fields appropriately.

fontSize - Variable in class loci.formats.in.BaseZeissReader.Shape

fontSize - Variable in class loci.formats.in.LeicaHandler.ROI

fontSize - Variable in class loci.formats.in.LIFReader.ROI

fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string that represents the change in font size.

fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string that represents the change in font size.

fontSize - Variable in class ome.xml.model.Shape

FontStyle - Enum in ome.xml.model.enums

FontStyle(String) - Constructor for enum ome.xml.model.enums.FontStyle

fontStyle - Variable in class ome.xml.model.Shape

FontStyleEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FontStyle.

FontStyleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontStyleEnumHandler

fontWeight - Variable in class loci.formats.in.BaseZeissReader.Shape

footer - Variable in class loci.poi.hssf.model.Sheet

FOOTER_SIZE - Static variable in class loci.formats.in.SIFReader

FooterRecord - Class in loci.poi.hssf.record

Title: Footer Record

FooterRecord() - Constructor for class loci.poi.hssf.record.FooterRecord

FooterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FooterRecord

Constructs a FooterRecord record and sets its fields appropriately.

footerRecord - Variable in class loci.poi.hssf.usermodel.HSSFFooter

force - Variable in class loci.common.ReflectedUniverse

Deprecated.

Whether to force our way past restrictive access modifiers.

force - Variable in class loci.formats.gui.DataConverter

forceType - Variable in class loci.formats.gui.DataConverter

forEachTile(TestTools.TileLoopIteration, int, int, int, int, int, int, int) - Static method in class loci.tests.testng.TestTools

Iterates over every tile in a given pixel buffer based on the over arching dimensions and a requested maximum tile width and height.

foreground - Variable in class loci.poi.hssf.usermodel.EscherGraphics

forkFile - Variable in class loci.formats.in.NativeQTReader

format - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

cache the metadata format

format - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

cache the J2KMetadataFormat

format - Variable in class loci.formats.FormatHandler

Name of this file format.

format - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's format.

format - Variable in class loci.poi.hssf.usermodel.HSSFCellStyle

format(String, Object[]) - Static method in class loci.poi.util.StringUtil

Apply printf() like formatting to a string.

FORMAT_ASSERTION - Static variable in class loci.poi.hpsf.PropertySet

The "format" field must equal this value.

FORMAT_MASK - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData

formatCompression(IFD) - Method in class loci.formats.out.TiffWriter

Sets the compression code for the specified IFD.

formatDate(String, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String, boolean) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String, boolean, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[]) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[], boolean) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[], String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[], boolean, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

FormatEntry - Class in loci.plugins.config

A list entry for the configuration window's Formats tab.

FormatEntry(PrintWriter, Object) - Constructor for class loci.plugins.config.FormatEntry

FormatException - Exception in loci.formats

FormatException is the exception thrown when something goes wrong performing a file format operation.

FormatException() - Constructor for exception loci.formats.FormatException

FormatException(String) - Constructor for exception loci.formats.FormatException

FormatException(String, Throwable) - Constructor for exception loci.formats.FormatException

FormatException(Throwable) - Constructor for exception loci.formats.FormatException

FormatFileFilter - Class in loci.formats.gui

A file filter for a biological file format, for use with a JFileChooser.

FormatFileFilter(IFormatReader) - Constructor for class loci.formats.gui.FormatFileFilter

Constructs a new filter that accepts files of the given reader's type.

FormatFileFilter(IFormatReader, boolean) - Constructor for class loci.formats.gui.FormatFileFilter

Constructs a new filter that accepts files of the given reader's type, allowing the reader to open files only if the allowOpen flag is set.

FormatHandler - Class in loci.formats

Abstract superclass of all biological file format readers and writers.

FormatHandler(String, String) - Constructor for class loci.formats.FormatHandler

Constructs a format handler with the given name and default suffix.

FormatHandler(String, String[]) - Constructor for class loci.formats.FormatHandler

Constructs a format handler with the given name and default suffixes.

formatID - Variable in class loci.poi.hpsf.Section

The section's format ID, Section.getFormatID().

formatInfo - Variable in class loci.plugins.config.ConfigWindow

formatIterator() - Method in class loci.poi.hssf.record.UnicodeString

formatLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

formatName - Variable in class loci.plugins.config.FormatEntry

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

FormatReader - Class in loci.formats

Abstract superclass of all biological file format readers.

FormatReader(String, String) - Constructor for class loci.formats.FormatReader

Constructs a format reader with the given name and default suffix.

FormatReader(String, String[]) - Constructor for class loci.formats.FormatReader

Constructs a format reader with the given name and default suffixes.

FormatReaderTest - Class in loci.tests.testng

TestNG tester for Bio-Formats file format readers.

FormatReaderTest(String, float, boolean) - Constructor for class loci.tests.testng.FormatReaderTest

FormatReaderTestFactory - Class in loci.tests.testng

Factory for scanning a directory structure and generating instances of FormatReaderTest based on the image files found.

FormatReaderTestFactory() - Constructor for class loci.tests.testng.FormatReaderTestFactory

FormatRecord - Class in loci.poi.hssf.record

Title: Format Record

FormatRecord() - Constructor for class loci.poi.hssf.record.FormatRecord

FormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormatRecord

Constructs a Format record and sets its fields appropriately.

FORMATS - Static variable in class loci.formats.in.GelReader

formats - Variable in class loci.poi.hssf.model.Workbook

formats - Variable in class loci.poi.hssf.usermodel.HSSFDataFormat

formatsList - Variable in class loci.plugins.config.ConfigWindow

formatsListModel - Variable in class loci.plugins.config.ConfigWindow

formatTag(int) - Method in class loci.formats.in.DicomReader

formatted - Static variable in class loci.poi.hssf.record.RowRecord

formatter - Variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Used to keep track of the data formatter so that all createDataFormatter calls return the same one for a given book.

formatText - Variable in class loci.formats.gui.PreviewPane

formatTip - Variable in class loci.formats.gui.PreviewPane

FormatTools - Class in loci.formats

A utility class for format reader and writer implementations.

FormatTools() - Constructor for class loci.formats.FormatTools

FormatWriter - Class in loci.formats

Abstract superclass of all biological file format writers.

FormatWriter(String, String) - Constructor for class loci.formats.FormatWriter

Constructs a format writer with the given name and default suffix.

FormatWriter(String, String[]) - Constructor for class loci.formats.FormatWriter

Constructs a format writer with the given name and default suffixes.

FormatWriterTest - Class in loci.tests.testng

TestNG tester for Bio-Formats file format writers.

FormatWriterTest(String) - Constructor for class loci.tests.testng.FormatWriterTest

FormatWriterTestFactory - Class in loci.tests.testng

Factory for scanning a directory structure and generating instances of FormatWriterTest based on the image files found.

FormatWriterTestFactory() - Constructor for class loci.tests.testng.FormatWriterTestFactory

FORMULA_TYPE_ARRAY - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_CELL - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_CONDFOMRAT - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_NAMEDRANGE - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_SHARED - Static variable in class loci.poi.hssf.model.FormulaParser

formulaLength - Variable in class loci.poi.hssf.model.FormulaParser

FormulaParser - Class in loci.poi.hssf.model

This class parses a formula string into a List of tokens in RPN order.

FormulaParser(String, Workbook) - Constructor for class loci.poi.hssf.model.FormulaParser

Create the formula parser, with the string that is to be parsed against the supplied workbook.

formulaRecord - Variable in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

FormulaRecord - Class in loci.poi.hssf.record

Formula Record.

FormulaRecord() - Constructor for class loci.poi.hssf.record.FormulaRecord

Creates new FormulaRecord

FormulaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormulaRecord

Constructs a Formula record and sets its fields appropriately.

FormulaRecordAggregate - Class in loci.poi.hssf.record.aggregates

The formula record aggregate is used to join together the formula record and it's (optional) string record and (optional) Shared Formula Record (template reads, excel optimization).

FormulaRecordAggregate(FormulaRecord, StringRecord) - Constructor for class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

formulasNotResults - Variable in class loci.poi.hssf.extractor.ExcelExtractor

formulaString(FormulaRecord) - Method in class loci.poi.hssf.dev.FormulaViewer

formulaString - Variable in class loci.poi.hssf.model.FormulaParser

formulaTokens - Variable in class loci.poi.hssf.record.LinkedDataFormulaField

FormulaViewer - Class in loci.poi.hssf.dev

FormulaViewer - finds formulas in a BIFF8 file and attempts to read them/display data from them.

FormulaViewer() - Constructor for class loci.poi.hssf.dev.FormulaViewer

Creates new FormulaViewer

FORW_ICT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for the Forward Irreversible Component Transformation (FORW_ICT).

FORW_RCT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for the Forward Reversible Component Transformation (FORW_RCT).

FORWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy

forwardWarningMessage(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

Package scope method to allow decompressors, for example, to emit warning messages.

ForwardWT - Class in jj2000.j2k.wavelet.analysis

This abstract class represents the forward wavelet transform functional block.

ForwardWT(ImgData) - Constructor for class jj2000.j2k.wavelet.analysis.ForwardWT

Initializes this object for the specified number of tiles 'nt' and components 'nc'.

ForwCompTransf - Class in jj2000.j2k.image.forwcomptransf

This class apply component transformations to the tiles depending on user specifications.

ForwCompTransf(BlkImgDataSrc, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Constructs a new ForwCompTransf object that operates on the specified source of image data.

ForwCompTransfSpec - Class in jj2000.j2k.image.forwcomptransf

This class extends CompTransfSpec class in order to hold encoder specific aspects of CompTransfSpec.

ForwCompTransfSpec(int, int, byte, AnWTFilterSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec

Constructs a new 'ForwCompTransfSpec' for the specified number of components and tiles and the arguments of optName option.

forwICT(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply forward irreversible component transformation to obtain requested component from specified block of data.

forwRCT(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply forward component transformation to obtain requested component from specified block of data.

ForwWT - Interface in jj2000.j2k.wavelet.analysis

This interface extends the WaveletTransform with the specifics of forward wavelet transforms.

ForwWTDataProps - Interface in jj2000.j2k.wavelet.analysis

This interface extends the ImgData interface with methods that are necessary for forward wavelet data (i.e.

ForwWTFull - Class in jj2000.j2k.wavelet.analysis

This class implements the ForwardWT with the full-page approach to be used either with integer or floating-point filters

ForwWTFull(BlkImgDataSrc, J2KImageWriteParamJava, int, int) - Constructor for class jj2000.j2k.wavelet.analysis.ForwWTFull

Initializes this object with the given source of image data and with all the decompositon parameters

fos - Variable in class loci.formats.Memoizer.KryoDeser

found - Variable in class loci.formats.in.ZeissTIFFHandler.TagSet

foundChannelTag - Variable in class loci.formats.in.CellSensReader

foundPlateLayout - Variable in class loci.formats.in.ScanrReader.ScanrHandler

foundPositions - Variable in class loci.formats.in.ScanrReader

fp - Variable in class jj2000.j2k.image.ImgDataConverter

The number of fraction bits in the casted ints

fp - Variable in class loci.common.StreamHandle

Current position within the stream.

fp - Variable in class loci.formats.AxisGuesser

File pattern identifying dimensional axis blocks.

fp - Variable in class loci.plugins.in.FilePatternDialog

FPA - Static variable in class ome.units.UNITS

fps - Variable in class loci.formats.FormatWriter

Frame rate to use when writing in frames per second, if applicable.

fps - Variable in class loci.formats.gui.DataConverter

fps - Variable in class loci.formats.gui.ImageViewer

fpsSpin - Variable in class loci.plugins.util.DataBrowser

FQColumn - Class in mdbtools.dbengine.sql

FQColumn(int, int) - Constructor for class mdbtools.dbengine.sql.FQColumn

FRAC_BITS - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

FRAC_SCALE - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

fracBits - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

frame - Variable in class loci.formats.in.PrairieMetadata.PFile

The <Frame> containing this <File>.

FRAME_OFFSET - Static variable in class loci.formats.out.AVIWriter

FRAME_OFFSET_2 - Static variable in class loci.formats.out.AVIWriter

FRAME_ORIGIN - Static variable in class loci.formats.in.CellSensReader

FRAME_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

FRAME_SCALE - Static variable in class loci.formats.in.CellSensReader

FRAME_SIZE - Static variable in class loci.formats.in.CellSensReader

FRAME_TRANSFER - Static variable in class loci.formats.in.CellSensReader

FRAME_TYPE - Static variable in class loci.formats.in.CellSensReader

frameCoordinates - Variable in class loci.formats.in.APNGReader

frameIndex(PrairieMetadata.Sequence, int, int, int) - Method in class loci.formats.in.PrairieReader

Gets the frame index associated with the given (Z, T) position of the specified series.

FrameRecord - Class in loci.poi.hssf.record

The frame record indicates whether there is a border around the displayed text of a chart.

FrameRecord() - Constructor for class loci.poi.hssf.record.FrameRecord

FrameRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FrameRecord

Constructs a Frame record and sets its fields appropriately.

frames - Variable in class loci.formats.in.PrairieMetadata.Sequence

<Frame> elements beneath this <Sequence>, keyed on each frame's index.

framesAreTime - Variable in class loci.formats.in.PrairieReader

Whether a series uses Frames as time points rather than focal planes (i.e., sizeZ and sizeT values inverted).

frameValues - Variable in class loci.formats.in.PrairieMetadata.Frame

Table of key/value pairs for this <Frame>.

FREE_BYTE_COUNTS - Static variable in class loci.formats.tiff.IFD

FREE_LINE - Static variable in class loci.formats.in.FV1000Reader

FREE_OFFSETS - Static variable in class loci.formats.tiff.IFD

FREE_SHAPE - Static variable in class loci.formats.in.FV1000Reader

freeTree(PaletteBuilder.ColorNode) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

freezePanes - Variable in class loci.poi.hssf.record.WindowTwoRecord

freezePanesNoSplit - Variable in class loci.poi.hssf.record.WindowTwoRecord

frequencies - Variable in class loci.formats.in.LiFlimReader

FREQUENCY - Static variable in class loci.formats.FormatTools

Identifies the Frequency dimensional type, representing a dimension consisting of frequencies.

Frequency - Class in ome.units.quantity

A wrapper for the Frequency class from the units implementation.

Frequency(Number, Unit<Frequency>) - Constructor for class ome.units.quantity.Frequency

FrequencyBand - Enum in ome.jxr.image

Enumeration of available frequency band counts.

FrequencyBand(int, Integer...) - Constructor for enum ome.jxr.image.FrequencyBand

frequencyModeCodestreamFlag - Variable in class ome.jxr.parser.DatastreamParser

frequencyMultiplication - Variable in class ome.xml.model.Laser

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

fromCIEXYZ(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace

fromClause() - Method in class mdbtools.dbengine.SelectEngine

fromISO8859(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata

fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFColorConverter

Converts an RGB triple into the native color space of this TIFFColorConverter, and stores the result in the first three entries of the result array.

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

fromRGB(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace

fromString(String) - Static method in enum ome.xml.model.enums.AcquisitionMode

fromString(String) - Static method in enum ome.xml.model.enums.ArcType

fromString(String) - Static method in enum ome.xml.model.enums.Binning

fromString(String) - Static method in enum ome.xml.model.enums.Compression

fromString(String) - Static method in enum ome.xml.model.enums.ContrastMethod

fromString(String) - Static method in enum ome.xml.model.enums.Correction

fromString(String) - Static method in enum ome.xml.model.enums.DetectorType

fromString(String) - Static method in enum ome.xml.model.enums.DimensionOrder

fromString(String) - Static method in enum ome.xml.model.enums.ExperimentType

fromString(String) - Static method in enum ome.xml.model.enums.FilamentType

fromString(String) - Static method in enum ome.xml.model.enums.FillRule

fromString(String) - Static method in enum ome.xml.model.enums.FilterType

fromString(String) - Static method in enum ome.xml.model.enums.FontFamily

fromString(String) - Static method in enum ome.xml.model.enums.FontStyle

fromString(String) - Static method in enum ome.xml.model.enums.IlluminationType

fromString(String) - Static method in enum ome.xml.model.enums.Immersion

fromString(String) - Static method in enum ome.xml.model.enums.LaserMedium

fromString(String) - Static method in enum ome.xml.model.enums.LaserType

fromString(String) - Static method in enum ome.xml.model.enums.LineCap

fromString(String) - Static method in enum ome.xml.model.enums.Marker

fromString(String) - Static method in enum ome.xml.model.enums.Medium

fromString(String) - Static method in enum ome.xml.model.enums.MicrobeamManipulationType

fromString(String) - Static method in enum ome.xml.model.enums.MicroscopeType

fromString(String) - Static method in enum ome.xml.model.enums.NamingConvention

fromString(String) - Static method in enum ome.xml.model.enums.PixelType

fromString(String) - Static method in enum ome.xml.model.enums.Pulse

fromString(String) - Static method in enum ome.xml.model.enums.UnitsElectricPotential

fromString(String) - Static method in enum ome.xml.model.enums.UnitsFrequency

fromString(String) - Static method in enum ome.xml.model.enums.UnitsLength

fromString(String) - Static method in enum ome.xml.model.enums.UnitsPower

fromString(String) - Static method in enum ome.xml.model.enums.UnitsPressure

fromString(String) - Static method in enum ome.xml.model.enums.UnitsTemperature

fromString(String) - Static method in enum ome.xml.model.enums.UnitsTime

FRONT_MASK - Static variable in class loci.common.RandomAccessInputStream

Various bitmasks for the xxxx0000 side of a byte.

FRONT_MASK - Static variable in class loci.formats.codec.BitBuffer

Deprecated.

Various bitmasks for the xxxx0000 side of a byte.

frozen - Variable in class loci.poi.hssf.util.PaneInformation

FS - Static variable in class ome.units.UNITS

FS_LOSSLESS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Distortion estimation lookup table for bits coded using the sign-code (SC) primative, for lossless coding and last bit-plane.

FS_LOSSY - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Distortion estimation lookup table for bits coded using the sign-code (SC) primative, for lossy coding (i.e.

FT - Static variable in class ome.units.UNITS

FT_BR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

File Type Fields

FTB_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Length of File Type Box

ftpIdx - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The index of the first truncation point returned

FujiReader - Class in loci.formats.in

FujiReader is the file format reader for Fuji LAS 3000 datasets.

FujiReader() - Constructor for class loci.formats.in.FujiReader

Constructs a new Fuji reader.

fullImage - Variable in class loci.formats.in.MRWReader

FuncPtg - Class in loci.poi.hssf.record.formula

FuncPtg() - Constructor for class loci.poi.hssf.record.formula.FuncPtg

FuncPtgs are defined to be 4 bytes but the actual FuncPtg uses only 2 bytes.

FuncPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncPtg

Creates new function pointer from a byte array usually called while reading an excel file.

function(String) - Method in class loci.poi.hssf.model.FormulaParser

Function - Interface in mdbtools.dbengine.functions

All functions must implement this

function - Variable in class mdbtools.dbengine.sql.FunctionDef

functionData - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

FunctionDef - Class in mdbtools.dbengine.sql

A defination of a function, used in the parse tree

FunctionDef() - Constructor for class mdbtools.dbengine.sql.FunctionDef

functionTokens - Variable in class loci.poi.hssf.model.FormulaParser

Using an unsynchronized linkedlist to implement a stack since we're not multi-threaded.

FuncVarPtg - Class in loci.poi.hssf.record.formula

FuncVarPtg() - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

FuncVarPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

Creates new function pointer from a byte array usually called while reading an excel file.

FuncVarPtg(String, byte) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

Create a function ptg from a string tokenised by the parser

FV - Static variable in class ome.units.UNITS

FV1000_MAGIC_STRING_1 - Static variable in class loci.formats.in.FV1000Reader

FV1000_MAGIC_STRING_2 - Static variable in class loci.formats.in.FV1000Reader

FV1000_SUFFIXES - Static variable in class loci.formats.in.FV1000Reader

FV1000Reader - Class in loci.formats.in

FV1000Reader is the file format reader for Fluoview FV 1000 OIB and Fluoview FV 1000 OIF files.

FV1000Reader() - Constructor for class loci.formats.in.FV1000Reader

Constructs a new FV1000 reader.

FV1000Reader.ChannelData - Class in loci.formats.in

FV1000Reader.ChannelData() - Constructor for class loci.formats.in.FV1000Reader.ChannelData

FV1000Reader.PlaneData - Class in loci.formats.in

FV1000Reader.PlaneData() - Constructor for class loci.formats.in.FV1000Reader.PlaneData

FW - Static variable in class ome.units.UNITS

G

g2D - Variable in class loci.poi.hssf.usermodel.DummyGraphics2d

G_SIZE - Static variable in class loci.common.CBZip2InputStream

gain - Variable in class loci.formats.in.BDReader

gain - Variable in class loci.formats.in.BioRadReader

gain - Variable in class loci.formats.in.BioRadSCNReader

gain - Variable in class loci.formats.in.CellSensReader.Pyramid

gain - Variable in class loci.formats.in.FV1000Reader.ChannelData

gain - Variable in class loci.formats.in.ImarisHDFReader

gain - Variable in class loci.formats.in.InCellReader

gain - Variable in class loci.formats.in.IvisionReader

gain - Variable in class loci.formats.in.LeicaHandler.Channel

gain - Variable in class loci.formats.in.MetamorphHandler

gain - Variable in class loci.formats.in.MetamorphReader

gain - Variable in class loci.formats.in.MicromanagerReader.Position

gain - Variable in class loci.formats.in.ND2Handler

gain - Variable in class loci.formats.in.NikonTiffReader

gain - Variable in class loci.formats.in.OpenlabReader

gain - Variable in class loci.formats.in.ZeissCZIReader.Channel

gain - Variable in class loci.formats.in.ZeissCZIReader

gain - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

gain - Variable in class ome.xml.model.Detector

gain - Variable in class ome.xml.model.DetectorSettings

GAIN_CONTROL - Static variable in class loci.formats.tiff.IFD

GAIN_CONTROL_HIGH_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_HIGH_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_LOW_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_LOW_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_UNIT - Static variable in class loci.formats.in.CellSensReader

gains - Variable in class loci.formats.in.FluoviewReader

gains - Variable in class loci.formats.in.LIFReader

GAMMA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the third lifting step coefficient

GAMMA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the third lifting step coefficient

gamma - Variable in class loci.formats.in.GatanReader

gamma(double) - Method in class loci.plugins.util.RecordedImageProcessor

GAMMA_CORRECTION - Static variable in class loci.formats.in.CellSensReader

gammaBlue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

gammaGreen - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

gammaRed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

GatanDM2Reader - Class in loci.formats.in

GatanDM2Reader is the file format reader for Gatan .dm2 files.

GatanDM2Reader() - Constructor for class loci.formats.in.GatanDM2Reader

Constructs a new Gatan .dm2 reader.

GatanReader - Class in loci.formats.in

GatanReader is the file format reader for Gatan files.

GatanReader() - Constructor for class loci.formats.in.GatanReader

Constructs a new Gatan reader.

gb - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

gb - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD

gb - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Number of guard bits off all component in the current tile.

gbs - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of guard bits specifications

gbs - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer

The number of guard bits spec

gbs - Variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

The guard bits specifications

gcd(int, int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Greatest Common Divisor (GCD) of two positive integer numbers.

gcd(int[]) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Greatest Common Divisor (GCD) of several positive integer numbers.

gct - Variable in class loci.formats.in.GIFReader

Global color table.

GDI_SIGNATURE - Static variable in class ome.jxr.constants.Image

GEL_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the gel and blot imaging domain.

GelReader - Class in loci.formats.in

GelReader is the file format reader for Molecular Dynamics GEL TIFF files.

GelReader() - Constructor for class loci.formats.in.GelReader

Constructs a new GEL reader.

GENERAL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

GENERAL_3I_MSG - Static variable in class loci.formats.in.SlideBook6Reader

generated - Variable in class loci.poi.hssf.record.TextRecord

generateRecords(String, String, String, String) - Static method in class loci.poi.dev.RecordGenerator

generateScreen(int, int, int, int, int) - Method in class loci.formats.tools.FakeImage

Creates a fake SPW file/directory structure.

GenericExcitationSource - Class in ome.xml.model

GenericExcitationSource() - Constructor for class ome.xml.model.GenericExcitationSource

Default constructor.

GenericExcitationSource(Element, OMEModel) - Constructor for class ome.xml.model.GenericExcitationSource

Constructs GenericExcitationSource recursively from an XML DOM tree.

GenericExcitationSource(GenericExcitationSource) - Constructor for class ome.xml.model.GenericExcitationSource

Copy constructor.

genericProcessEvents(HSSFRequest, RecordInputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a DocumentInputStream into essentially Record events.

GEOMETRY__3DOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST10VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST2VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST3VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST4VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST5VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST6VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST7VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST8VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST9VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUSTVALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__BOTTOM - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__FILLOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__FILLSHADESHAPEOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__GEOTEXTOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__LEFT - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__LINEOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__RIGHT - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__SEGMENTINFO - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__SHADOWok - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__SHAPEPATH - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__TOP - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__VERTICES - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__ALIGNMENTONCURVE - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__BOLDFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__CHARBOUNDINGBOX - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__DEFAULTPOINTSIZE - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__FONTFAMILYNAME - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__HASTEXTEFFECT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__ITALICFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__KERNCHARACTERS - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__NOMEASUREALONGPATH - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__REVERSEROWORDER - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__ROTATECHARACTERS - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__RTFTEXT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__SCALETEXTONPATH - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__SHADOWFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__SMALLCAPSFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__STRETCHCHARHEIGHT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__STRETCHTOFITSHAPE - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__STRIKETHROUGHFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__TEXTSPACING - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__TIGHTORTRACK - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__UNDERLINEFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__UNICODE - Static variable in class loci.poi.ddf.EscherProperties

GeoTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in a GeoTIFF IFD.

GeoTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

GeoTIFFTagSet.GeoAsciiParams - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.GeoAsciiParams() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.GeoAsciiParams

GeoTIFFTagSet.GeoDoubleParams - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.GeoDoubleParams() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.GeoDoubleParams

GeoTIFFTagSet.GeoKeyDirectory - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.GeoKeyDirectory() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.GeoKeyDirectory

GeoTIFFTagSet.ModelPixelScale - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.ModelPixelScale() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.ModelPixelScale

GeoTIFFTagSet.ModelTiePoint - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.ModelTiePoint() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.ModelTiePoint

GeoTIFFTagSet.ModelTransformation - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.ModelTransformation() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.ModelTransformation

get(int) - Method in class loci.formats.codec.ByteVector

get(int) - Static method in enum loci.formats.codec.CompressionType

Retrieves the compression by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.codec.JPEG2000BoxType

Retrieves the box type by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.codec.JPEG2000SegmentMarker

Retrieves the segment marker by reverse lookup of its "code".

get(int, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileCache

get(int) - Static method in enum loci.formats.in.BaseZeissReader.Charset

get(int) - Static method in enum loci.formats.in.BaseZeissReader.DrawStyle

get(int) - Static method in enum loci.formats.in.BaseZeissReader.FeatureType

get(int) - Static method in enum loci.formats.in.BaseZeissReader.FillStyle

get(int) - Static method in enum loci.formats.in.BaseZeissReader.LineEndPositions

get(int) - Static method in enum loci.formats.in.BaseZeissReader.LineEndStyle

get(int) - Static method in enum loci.formats.in.BaseZeissReader.PointStyle

get(int) - Static method in enum loci.formats.in.BaseZeissReader.TextAlignment

get(Object) - Method in interface loci.formats.in.PrairieMetadata.Value

get(int) - Method in interface loci.formats.in.PrairieMetadata.Value

get(Object) - Method in class loci.formats.in.PrairieMetadata.ValueItem

get(int) - Method in class loci.formats.in.PrairieMetadata.ValueItem

get(int) - Method in class loci.formats.in.PrairieMetadata.ValueTable

get(int) - Static method in enum loci.formats.tiff.IFDType

Retrieves a IFD type by reverse lookup of its "code".

get(int) - Method in class loci.formats.tiff.OnDemandLongArray

get(int) - Static method in enum loci.formats.tiff.PhotoInterp

Retrieves a photometric interpretation by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.tiff.TiffCompression

Retrieves a TIFF compression instance by code.

get(List<T>, int, T) - Method in class loci.plugins.in.ImporterOptions

get(int) - Method in class loci.plugins.util.RecordedImageProcessor

get(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

get(String) - Method in class loci.poi.hpsf.CustomProperties

Gets a named value from the custom properties.

get(long) - Method in class loci.poi.hpsf.wellknown.PropertyIDMap

Gets the ID string for an ID from the PropertyIDMap.

get(byte[]) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the PropertyIDMap for a given section format ID.

get(Object) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Deprecated.

Use SectionIDMap.get(byte[]) instead!

get(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

get(Object) - Method in class loci.poi.util.BinaryTree

Returns the value to which this map maps the specified key.

get() - Method in class loci.poi.util.ByteField

get the ByteField's current value

get(int) - Method in class loci.poi.util.DoubleList

Returns the element at the specified position in this list.

get(int, int) - Method in class loci.poi.util.DoubleList2d

get() - Method in class loci.poi.util.IntegerField

get the IntegerField's current value

get(int) - Method in class loci.poi.util.IntList

Returns the element at the specified position in this list.

get(int, int) - Method in class loci.poi.util.IntList2d

get(int) - Method in class loci.poi.util.IntMapper

get(int, int) - Method in class loci.poi.util.List2d

get() - Method in class loci.poi.util.LongField

get the LongField's current value

get() - Method in class loci.poi.util.ShortField

get the ShortField's current value

get(int) - Method in class loci.poi.util.ShortList

Returns the element at the specified position in this list.

get(String) - Method in class loci.tests.testng.ConfigurationTree

Retrieves the Configuration object corresponding to the given file.

get(int) - Method in interface mdbtools.dbengine.Data

get the data at a certain column

get(int) - Method in class mdbtools.dbengine.MemoryData

get the data at a certain column

get(int) - Method in class mdbtools.dbengine.Tests.SimpleData

get123Prefix() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get some old holdover from lotus 123.

get16BitLookupTable() - Method in class loci.formats.ChannelFiller

get16BitLookupTable() - Method in class loci.formats.DelegateReader

get16BitLookupTable() - Method in class loci.formats.FileStitcher

get16BitLookupTable() - Method in class loci.formats.FormatReader

get16BitLookupTable() - Method in interface loci.formats.IFormatReader

Gets the 16-bit color lookup table associated with the most recently opened image.

get16BitLookupTable() - Method in class loci.formats.ImageReader

get16BitLookupTable() - Method in class loci.formats.in.BaseZeissReader

get16BitLookupTable() - Method in class loci.formats.in.DicomReader

get16BitLookupTable() - Method in class loci.formats.in.FakeReader

get16BitLookupTable() - Method in class loci.formats.in.FilePatternReader

get16BitLookupTable() - Method in class loci.formats.in.FV1000Reader

get16BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader

get16BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader

get16BitLookupTable() - Method in class loci.formats.in.InCellReader

get16BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader

get16BitLookupTable() - Method in class loci.formats.in.JPXReader

get16BitLookupTable() - Method in class loci.formats.in.LeicaReader

get16BitLookupTable() - Method in class loci.formats.in.LIFReader

get16BitLookupTable() - Method in class loci.formats.in.MIASReader

get16BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader

get16BitLookupTable() - Method in class loci.formats.in.NativeND2Reader

get16BitLookupTable() - Method in class loci.formats.in.OMETiffReader

get16BitLookupTable() - Method in class loci.formats.in.PDSReader

get16BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader

get16BitLookupTable() - Method in class loci.formats.in.ScreenReader

get16BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader

get16BitLookupTable() - Method in class loci.formats.in.TCSReader

get16BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader

get16BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader

get16BitLookupTable() - Method in class loci.formats.in.ZipReader

get16BitLookupTable() - Method in class loci.formats.ReaderWrapper

get26Sys(String) - Method in class loci.poi.hssf.util.RangeAddress

get8BitLookupTable() - Method in class loci.formats.ChannelFiller

get8BitLookupTable() - Method in class loci.formats.DelegateReader

get8BitLookupTable() - Method in class loci.formats.FileStitcher

get8BitLookupTable() - Method in class loci.formats.FormatReader

get8BitLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Converts an IndexColorModel to a 2D byte array.

get8BitLookupTable() - Method in interface loci.formats.IFormatReader

Gets the 8-bit color lookup table associated with the most recently opened image.

get8BitLookupTable() - Method in class loci.formats.ImageReader

get8BitLookupTable() - Method in class loci.formats.in.AmiraReader

get8BitLookupTable() - Method in class loci.formats.in.APNGReader

get8BitLookupTable() - Method in class loci.formats.in.AVIReader

get8BitLookupTable() - Method in class loci.formats.in.BaseZeissReader

get8BitLookupTable() - Method in class loci.formats.in.BioRadReader

get8BitLookupTable() - Method in class loci.formats.in.BMPReader

get8BitLookupTable() - Method in class loci.formats.in.CellH5Reader

get8BitLookupTable() - Method in class loci.formats.in.DicomReader

get8BitLookupTable() - Method in class loci.formats.in.FakeReader

get8BitLookupTable() - Method in class loci.formats.in.FilePatternReader

get8BitLookupTable() - Method in class loci.formats.in.GIFReader

get8BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader

get8BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader

get8BitLookupTable() - Method in class loci.formats.in.InCellReader

get8BitLookupTable() - Method in class loci.formats.in.IPWReader

get8BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader

get8BitLookupTable() - Method in class loci.formats.in.JPXReader

get8BitLookupTable() - Method in class loci.formats.in.KhorosReader

get8BitLookupTable() - Method in class loci.formats.in.LeicaReader

get8BitLookupTable() - Method in class loci.formats.in.LIFReader

get8BitLookupTable() - Method in class loci.formats.in.MIASReader

get8BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader

get8BitLookupTable() - Method in class loci.formats.in.NativeND2Reader

get8BitLookupTable() - Method in class loci.formats.in.OMETiffReader

get8BitLookupTable() - Method in class loci.formats.in.OpenlabReader

get8BitLookupTable() - Method in class loci.formats.in.PCXReader

get8BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader

get8BitLookupTable() - Method in class loci.formats.in.PictReader

get8BitLookupTable() - Method in class loci.formats.in.PSDReader

get8BitLookupTable() - Method in class loci.formats.in.ScreenReader

get8BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader

get8BitLookupTable() - Method in class loci.formats.in.TargaReader

get8BitLookupTable() - Method in class loci.formats.in.TCSReader

get8BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader

get8BitLookupTable() - Method in class loci.formats.in.ZeissLMSReader

get8BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader

get8BitLookupTable() - Method in class loci.formats.in.ZipReader

get8BitLookupTable() - Method in class loci.formats.ReaderWrapper

getA00() - Method in class ome.xml.model.AffineTransform

getA01() - Method in class ome.xml.model.AffineTransform

getA02() - Method in class ome.xml.model.AffineTransform

getA10() - Method in class ome.xml.model.AffineTransform

getA11() - Method in class ome.xml.model.AffineTransform

getA12() - Method in class ome.xml.model.AffineTransform

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

This method wraps the protected method abortRequested to allow the abortions be monitored by J2KReadState.

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

This method wraps the protected method abortRequested to allow the abortions be monitored by J2KRenderedImage.

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

This method wraps the protected method abortRequested to allow the abortions be monitored by J2KReadState.

getAbsoluteFile() - Method in class loci.common.Location

getAbsolutePath() - Method in class loci.common.Location

getAbsoluteTime() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the absoluteTime associated with this Frame.

getAccessTimeMillis() - Method in class loci.tests.testng.Configuration

getAcquisitionDate() - Method in class ome.xml.model.Image

getAcquisitionMode(String) - Method in class loci.formats.FormatReader

Retrieves an AcquisitionMode enumeration value for the given String.

getAcquisitionMode() - Method in class ome.xml.model.Channel

getActiveCellCol() - Method in class loci.poi.hssf.model.Sheet

Returns the active column

getActiveCellCol() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's col

getActiveCellRef() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's reference number

getActiveCellRow() - Method in class loci.poi.hssf.model.Sheet

Returns the active row

getActiveCellRow() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's row

getActiveChannels() - Method in class loci.formats.in.PrairieMetadata

Gets the list of active channel indices, in sorted order.

getActivePane() - Method in class loci.poi.hssf.record.PaneRecord

Get the active pane field for the Pane record.

getActivePane() - Method in class loci.poi.hssf.util.PaneInformation

Returns the active pane

getActualNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the actual number of read bytes.

getActualRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the actual decoding rate in bits per pixel.

getActualSizeOfElements(short) - Static method in class loci.poi.ddf.EscherArrayProperty

Sometimes the element size is stored as a negative number.

getAddMenuCount() - Method in class loci.poi.hssf.record.MMSRecord

get number of add menu options (should be 0)

getAddress() - Method in class loci.poi.hssf.util.RangeAddress

getAdjustedIndex(int) - Method in class loci.formats.FileStitcher

Gets the local reader index for use with the given image plane.

getAdjustedOrder() - Method in class loci.formats.AxisGuesser

Gets the adjusted dimension order.

getAdtlDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get for diagonal borders? No idea (its a palette color for the other function we didn't know what was?)

getAdtlDiagLineStyle() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the diagonal border line style? Who the heck ever heard of a diagonal border?

getAdtlFillPattern() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the additional fill pattern

getAdtlPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the additional palette options bitmask (see individual bit getter methods that reference this method)

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader

getAdvancedSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of FileInfo objects representing the files needed to open the current series.

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getAdvancedUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getAdvancedUsedFiles(boolean) - Method in class loci.formats.FormatReader

getAdvancedUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of FileInfo objects representing the files needed to open this dataset.

getAdvancedUsedFiles(boolean) - Method in class loci.formats.ImageReader

getAdvancedUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getAirPressure() - Method in class ome.xml.model.ImagingEnvironment

getAirPressureUnitXsdDefault() - Static method in class ome.xml.model.ImagingEnvironment

getAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the horizontal alignment of the cell.

getAlignment() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of horizontal alignment for the cell

getAlignmentOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the alignment options bitmask.

getAlignROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets alignROI

getAllChildren(Integer) - Method in class loci.formats.in.VolocityReader

getAllCodeBlocks() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

This method gets all the coded code-blocks from the EBCOT entropy coder for every component and every tile.

getAllEmbeddedObjects() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all embedded OLE2 objects from the Workbook.

getAllEmbeddedObjects(List, List) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all embedded OLE2 objects from the Workbook.

getAllFiles(String) - Method in class loci.formats.FilePattern

getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory

getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

getAllNodes(IIOMetadataNode, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

getAllowedTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns a List containing the allowed TIFFTagSet objects.

getAllPictures() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all pictures from the Workbook.

getAlpha(int) - Method in class loci.formats.gui.Index16ColorModel

getAlpha(int) - Method in class loci.formats.gui.SignedColorModel

getAlpha(Object) - Method in class loci.formats.gui.SignedColorModel

getAlpha(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getAlpha(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getAlpha() - Method in class ome.xml.model.primitives.Color

Returns the alpha component of this color.

getAlphaBandPresence() - Method in class ome.jxr.ifd.IFDMetadata

getAlphaByteCount() - Method in class ome.jxr.ifd.IFDMetadata

getAlphaOffset() - Method in class ome.jxr.ifd.IFDMetadata

getAlphas() - Method in class loci.formats.gui.Index16ColorModel

Return the array of alpha color components.

getAlternateExpression() - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternate expression evaluation is on

getAlternateExpression() - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternate expression evaluation is on

getAlternateFormula() - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternative formula entry is on

getAlternateFormula() - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternative formula entry is on

getAlternateMD5() - Method in class loci.tests.testng.Configuration

getAmplificationGain() - Method in class ome.xml.model.Detector

getAnchor() - Method in class loci.poi.hssf.usermodel.HSSFShape

getAnchorHeightInPoints(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Calculates the height of a client anchor in points.

getAnchorId() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the anchor id field for the ObjectLink record.

getAnchorType() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Gets the anchor type

getAndMoveToFrontDecode() - Method in class loci.common.CBZip2InputStream

getAndMoveToFrontDecode0(int) - Method in class loci.common.CBZip2InputStream

getAndMoveToFrontDecodeYY - Variable in class loci.common.CBZip2InputStream.Data

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the high-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the low-pass analysis filter.

getAnnotator() - Method in class ome.xml.model.Annotation

getAnSubbandTree(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns a reference to the root of subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns a reference to the root of subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component of the source.

getApplicationName() - Method in class loci.poi.hpsf.SummaryInformation

Returns the application name (or null).

getApproximationAccuracy() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns ApproximationAccuracy.

getArabic() - Method in class loci.poi.hssf.record.WindowTwoRecord

is this arabic?

getArcAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getArcAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Arc.

getArcAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcID(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Arc.

getArcID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Arc.

getArcLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Arc.

getArcManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Arc.

getArcModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcPower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcPower(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcPower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of Arc.

getArcPower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Arc.

getArcSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcType(String) - Method in class loci.formats.FormatReader

Retrieves an ArcType enumeration value for the given String.

getArcType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcType(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Arc.

getArcType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArea() - Method in class loci.poi.hssf.util.Region

getAreaAt(int) - Method in class loci.poi.hssf.record.MergeCellsRecord

return the MergedRegion at the given index.

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaAPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNAPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNVPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaVPtg

getAreaReference(Workbook) - Method in class loci.poi.hssf.record.NameRecord

gets the reference , the area only (range)

getArgument() - Method in class mdbtools.dbengine.sql.FunctionDef

getArray(String, int[], int[]) - Method in interface loci.formats.services.NetCDFService

Retrieves an HDF path's values.

getArray(String, int[], int[]) - Method in class loci.formats.services.NetCDFServiceImpl

getArtistName() - Method in class ome.jxr.ifd.IFDMetadata

getAsBytes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the data as an uninterpreted array of bytes.

getAsChars() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SHORT data as an array of chars (unsigned 16-bit integers).

getAsDouble(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a double.

getAsDoubles() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_DOUBLE data as an array of doubles (64-bit floating-point values).

getAsFloat(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a float.

getAsFloats() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_FLOAT data as an array of floats (32-bit floating-point values).

getAsInt(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as an int.

getAsInts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SLONG data as an array of ints (signed 32-bit integers).

getAsLong(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a long.

getAsLongs() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_LONG or TIFF_IFD_POINTER data as an array of longs (signed 64-bit integers).

getAsMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Converts the directory to a metadata object.

getAsNativeNode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the TIFFField as a node named either "TIFFField" or "TIFFIFD" as described in the TIFF native image metadata specification.

getAsRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_RATIONAL data item as a two-element array of ints.

getAsRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_RATIONAL data as an array of 2-element arrays of longs.

getAsShorts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SSHORT data as an array of shorts (signed 16-bit integers).

getAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the association which associates a color channel to a color component in the color space of the image.

getAsSRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_SRATIONAL data item as a two-element array of ints.

getAsSRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SRATIONAL data as an array of 2-element arrays of ints.

getAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_ASCII value as a String.

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getAttenuation() - Method in class ome.xml.model.LightSourceSettings

getAttribute(Node, String) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

getAttribute(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the attribute from the node.

getAttribute(Node, String, String, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getAttribute(Node, String, String, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Extracts the value of the attribute from name.

getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getAttributeDataType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeDefaultValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeDescription(String, String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeEnumerations(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeList() - Method in interface loci.formats.services.NetCDFService

Retrieves an exhaustive list of the HDF paths for all attributes in the HDF document.

getAttributeList() - Method in class loci.formats.services.NetCDFServiceImpl

getAttributeListMaxLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeListMinLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeMaxValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeMinValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributes() - Method in class loci.poi.hssf.record.FontRecord

get the font attributes (see individual bit getters that reference this method)

getAttributeValue(String) - Method in interface loci.formats.services.NetCDFService

Retrieves an attribute's value.

getAttributeValue(String) - Method in class loci.formats.services.NetCDFServiceImpl

getAttributeValueType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttrInfo(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Returns the author (or null).

getAuthor() - Method in class loci.poi.hssf.record.NoteRecord

Name of the original comment author

getAuthor() - Method in class loci.poi.hssf.usermodel.HSSFComment

Name of the original comment author

getAutobreaks() - Method in class loci.poi.hssf.record.WSBoolRecord

show automatic page breaks or not

getAutobreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

show automatic page breaks or not

getAutoContinue() - Method in class loci.poi.hssf.record.RecordInputStream

getAutoscaleInfo() - Method in class loci.plugins.in.ImporterOptions

getAutoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

getAutoThreshold(int[]) - Method in class loci.plugins.util.RecordedImageProcessor

getAvailableMemory() - Method in class loci.plugins.in.MemoryDialog

getAxisCount(int) - Method in class loci.formats.AxisGuesser

Gets the number of axes in the pattern of the given type.

getAxisCountC() - Method in class loci.formats.AxisGuesser

Gets the number of C axes in the pattern.

getAxisCountS() - Method in class loci.formats.AxisGuesser

Gets the number of S axes in the pattern.

getAxisCountT() - Method in class loci.formats.AxisGuesser

Gets the number of T axes in the pattern.

getAxisCountZ() - Method in class loci.formats.AxisGuesser

Gets the number of Z axes in the pattern.

getAxisGuesser() - Method in class loci.formats.FileStitcher.ExternalSeries

getAxisGuesser() - Method in class loci.formats.FileStitcher

Gets the axis guesser object used to guess which dimensional axes are which.

getAxisType(String) - Static method in class loci.formats.AxisGuesser

Returns a best guess of the given label's axis type.

getAxisType() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Get the axis type field for the AxisLineFormat record.

getAxisType() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the axis type field for the AxisParent record.

getAxisType() - Method in class loci.poi.hssf.record.AxisRecord

Get the axis type field for the Axis record.

getAxisTypes() - Method in class loci.formats.AxisGuesser

Gets the guessed axis type for each dimensional block.

getAxisTypes() - Method in class loci.formats.FileStitcher

Gets the axis type for each dimensional block.

getBackcolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the backcolor index field for the AreaFormat record.

getBackground() - Method in class loci.poi.hssf.record.TickRecord

Get the background field for the Tick record.

getBackground() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getBackgroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the background color field for the AreaFormat record.

getBackgroundValue() - Method in class loci.plugins.util.RecordedImageProcessor

getBackup() - Method in class loci.poi.hssf.record.BackupRecord

get the backup flag

getBackupFlag() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

determine whether the Excel GUI will backup the workbook when saving.

getBackuppos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getBackupRecord() - Method in class loci.poi.hssf.model.Workbook

Returns the position of the backup record.

getBadFontHeight() - Method in class loci.poi.hssf.record.RowRecord

get whether the font and row height are not compatible

getBandSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getBarSpace() - Method in class loci.poi.hssf.record.BarRecord

Get the bar space field for the Bar record.

getBaseReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getBaseUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the base unit field for the AxisOptions record.

getBaseUnit(UnitsElectricPotential) - Static method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getBaseUnit(UnitsFrequency) - Static method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getBaseUnit(UnitsLength) - Static method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getBaseUnit(UnitsPower) - Static method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getBaseUnit(UnitsPressure) - Static method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getBaseUnit(UnitsTemperature) - Static method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getBaseUnit(UnitsTime) - Static method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getBATArray() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getBATCount() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getBestIndex(Color) - Method in class loci.plugins.util.RecordedImageProcessor

getBigBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

getBigBlockSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

getBigBlockSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument

getBigBlockSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

getBigBlockSize() - Method in class loci.poi.poifs.storage.BATBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.BigBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.DocumentBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.HeaderBlockWriter

getBigBlockSize() - Method in class loci.poi.poifs.storage.PropertyBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlockList

getBigBlockSize() - Method in class loci.poi.poifs.storage.SmallDocumentBlock

getBigEndian() - Method in class ome.xml.model.BinData

getBigEndian() - Method in class ome.xml.model.Pixels

getBinaryFile() - Method in class ome.xml.model.FileAnnotation

getBinaryFileFileName(int) - Method in class ome.xml.meta.AggregateMetadata

getBinaryFileFileName(int) - Method in class ome.xml.meta.DummyMetadata

getBinaryFileFileName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FileName property of BinaryFile.

getBinaryFileFileName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinaryFileMIMEType(int) - Method in class ome.xml.meta.AggregateMetadata

getBinaryFileMIMEType(int) - Method in class ome.xml.meta.DummyMetadata

getBinaryFileMIMEType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MIMEType property of BinaryFile.

getBinaryFileMIMEType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinaryFileSize(int) - Method in class ome.xml.meta.AggregateMetadata

getBinaryFileSize(int) - Method in class ome.xml.meta.DummyMetadata

getBinaryFileSize(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Size property of BinaryFile.

getBinaryFileSize(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinaryOnly() - Method in class ome.xml.model.OME

getBinaryOnlyMetadataFile() - Method in class ome.xml.meta.AggregateMetadata

getBinaryOnlyMetadataFile() - Method in class ome.xml.meta.DummyMetadata

getBinaryOnlyMetadataFile() - Method in interface ome.xml.meta.MetadataRetrieve

Get the MetadataFile property of BinaryOnly.

getBinaryOnlyMetadataFile() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinaryOnlyUUID() - Method in class ome.xml.meta.AggregateMetadata

getBinaryOnlyUUID() - Method in class ome.xml.meta.DummyMetadata

getBinaryOnlyUUID() - Method in interface ome.xml.meta.MetadataRetrieve

Get the UUID property of BinaryOnly.

getBinaryOnlyUUID() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinData() - Method in class ome.xml.model.BinaryFile

getBinData(int) - Method in class ome.xml.model.Mask

getBinData(int) - Method in class ome.xml.model.Pixels

getBinning(String) - Method in class loci.formats.FormatReader

Retrieves an Binning enumeration value for the given String.

getBinning() - Method in class loci.formats.in.MetamorphHandler

getBinning() - Method in class ome.xml.model.DetectorSettings

getBinnings() - Method in class loci.formats.in.ND2Handler

getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Returns the bit depths for all the image components.

getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the bit depth for all the image components.

getBitDepth() - Method in class loci.formats.in.PrairieMetadata

Gets the bitDepth recorded in the configuration.

getBitDepths() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the bit depths for all the color components.

getBitOffset() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getBits(int) - Method in class loci.formats.codec.BitBuffer

Deprecated.

Returns an int value representing the value of the bits read from the byte array, from the current position.

getBits() - Method in enum ome.jxr.ifd.PixelType

getBitsPerPixel(SampleModel) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Returns the number of bits per pixel.

getBitsPerPixel() - Method in class loci.formats.FileStitcher

getBitsPerPixel() - Method in class loci.formats.FormatReader

getBitsPerPixel() - Method in interface loci.formats.IFormatReader

Gets the number of valid bits per pixel.

getBitsPerPixel() - Method in class loci.formats.ImageReader

getBitsPerPixel() - Method in class loci.formats.in.FilePatternReader

getBitsPerPixel(int) - Method in class loci.formats.in.OBFReader

getBitsPerPixel() - Method in class loci.formats.ReaderWrapper

getBitsPerPixel() - Method in class ome.jxr.ifd.IFDMetadata

getBitsPerSample() - Method in class loci.formats.tiff.IFD

Retrieves the image's bits per sample (TIFF tag BitsPerSample) from a given TIFF IFD.

getBlankThumbBytes() - Method in class loci.formats.FileStitcher.ExternalSeries

getBlipRecord() - Method in class loci.poi.ddf.EscherBSERecord

getBlipType(byte) - Method in class loci.poi.ddf.EscherBSERecord

Retrieve the string representation given a blip id.

getBlipType(byte) - Method in class loci.poi.ddf.EscherDump

Returns the blip description given a blip id.

getBlipTypeMacOS() - Method in class loci.poi.ddf.EscherBSERecord

The expected blip type under MacOS (failure to match this blip type will result in Excel converting to this format).

getBlipTypeWin32() - Method in class loci.poi.ddf.EscherBSERecord

The expected blip type under windows (failure to match this blip type will result in Excel converting to this format).

getBlock(int) - Method in class loci.formats.FilePattern

Gets the specified numerical block.

getBlock() - Method in class loci.formats.FilePatternBlock

getBlock(int, String) - Method in class loci.formats.in.ScanrReader

getBlockAligned() - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function returns the blockAligned flag

getBlocks() - Method in class loci.formats.FilePattern

Gets each numerical block.

getBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

getBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

getBlocks() - Method in class loci.poi.poifs.storage.RawDataBlockList

getBlocks() - Method in class loci.poi.poifs.storage.SmallDocumentBlockList

getBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlock

getBlue(int) - Method in class loci.formats.gui.Index16ColorModel

getBlue(int) - Method in class loci.formats.gui.SignedColorModel

getBlue(Object) - Method in class loci.formats.gui.SignedColorModel

getBlue(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getBlue(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getBlue() - Method in class loci.poi.ddf.EscherRGBProperty

getBlue() - Method in class ome.xml.model.primitives.Color

Returns the blue component of this color.

getBlueOffset(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

For the given pixel format, returns the number of bytes that the blue component is offset from the start of the pixel.

getBlues() - Method in class loci.formats.gui.Index16ColorModel

Return the array of blue color components.

getBoldWeight() - Method in class loci.poi.hssf.record.FontRecord

get the bold weight for this font (100-1000dec or 0x64-0x3e8).

getBoldweight() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the boldness to use

getBoolean(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the boolean type attribute.

getBooleanAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getBooleanAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a BooleanAnnotation.

getBooleanAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of BooleanAnnotation.

getBooleanAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of BooleanAnnotation.

getBooleanAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of BooleanAnnotation elements.

getBooleanAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of BooleanAnnotation.

getBooleanAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of BooleanAnnotation.

getBooleanAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of BooleanAnnotation.

getBooleanAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of BooleanAnnotation.

getBooleanAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAttribute(Node, String, boolean, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getBooleanAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getBooleanCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a boolean.

getBooleanOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the boolean option with the given key.

getBooleanValue(String) - Method in class loci.plugins.Slicer

Gets the value of the given macro key as a boolean.

getBooleanValue() - Method in class loci.poi.hssf.record.BoolErrRecord

get the value for the cell

getBorderBottom() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the bottom border

getBorderBottom() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the bottom border of the cell

getBorderLeft() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the left border

getBorderLeft() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the left border of the cell

getBorderOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the border options bitmask (see the corresponding bit getter methods that reference back to this one)

getBorderRight() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the right border

getBorderRight() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the right border of the cell

getBorderTop() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the top border

getBorderTop() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the top border of the cell

getBorderType() - Method in class loci.poi.hssf.record.FrameRecord

Get the border type field for the Frame record.

getBottomBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getBottomBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the bottom border

getBoundaryHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the boundary height of the metafile drawing commands

getBoundaryLeft() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the left boundary of the metafile drawing commands

getBoundaryTop() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the top boundary of the metafile drawing commands

getBoundaryWidth() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the boundary width of the metafile drawing commands

getBounds() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns a Rectangle indicating the image bounds.

getBounds(BigInteger[], boolean) - Static method in class loci.formats.FilePattern

Gets a string containing start, end and step values for a sorted list of numbers.

getBounds() - Method in class loci.poi.ddf.EscherMetafileBlip

getBounds() - Method in class loci.poi.ddf.EscherPictBlip

getBoundWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFCell

Returns the Workbook that this Cell is bound to

getBoxClass(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the Box class for the box with the provided type.

getBranchIndex(Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getBrand() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the brand of this file type box.

getBreak(short) - Method in class loci.poi.hssf.record.PageBreakRecord

Retrieves the region at the row/column indicated

getBreaksIterator() - Method in class loci.poi.hssf.record.PageBreakRecord

getBSERecord(int) - Method in class loci.poi.hssf.model.Workbook

getBspos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getBubbleSeriesType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the bubble series type field for the Series record.

getBucketAbsoluteOffsets() - Method in class loci.poi.hssf.record.SSTSerializer

getBucketRelativeOffsets() - Method in class loci.poi.hssf.record.SSTSerializer

getBucketSSTOffset() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getBuffer() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Returns the byte buffer.

getBuffer() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the byte-buffer used to store the codestream header.

getBufferedImage() - Method in class loci.plugins.util.RecordedImageProcessor

getBufferLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the number of bytes used in the codestream header's buffer.

getBufferSize() - Method in class loci.common.NIOFileHandle

Gets the current buffer size.

getBuild() - Method in class loci.poi.hssf.record.BOFRecord

get the build that wrote this file

getBuildDate(String[]) - Method in class loci.plugins.macro.LociFunctions

getBuildYear() - Method in class loci.poi.hssf.record.BOFRecord

Year of the build that wrote this file

getBuiltin() - Method in class loci.poi.hssf.record.StyleRecord

if this is a builtin style get the number of the built in style

getBuiltinFormat(String) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format index that matches the given format string

getBuiltinFormat(short) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format string that matches the given format index

getBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

getBuiltInName() - Method in class loci.poi.hssf.record.NameRecord

Gets the Built In Name

getBypass() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets bypass

getByte(int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Returns the byte buffered at the given position in the buffer.

getByteArray(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the integer type attribute.

getByteArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

Copy a portion of a byte array

getByteArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets the byte array from an IIOMetadataNode.

getByteBuffer() - Method in class loci.common.ByteArrayHandle

Gets the byte buffer backing this handle.

getByteBuffer() - Method in class loci.formats.codec.BitBuffer

Deprecated.

Return the backing byte array.

getByteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the byte count or 0 if the DocumentSummaryInformation does not contain a byte count.

getByteElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its byte value from an IIOMetadataNode.

getByteInputBuffer() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Returns the underlying 'ByteInputBuffer' from where the MQ coded input bytes are read.

getByteOrder() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getByteOrder() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "byte order" field.

getByteOrder() - Method in class loci.poi.hpsf.SpecialPropertySet

getByteOrdering() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataInput

Returns the endianess (i.e., byte ordering) of the implementing class.

getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataOutput

Returns the endianness (i.e., byte ordering) of the implementing class.

getByteOrdering() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the endianess (i.e., byte ordering) of the implementing class.

getByteOrdering() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the endianess (i.e., byte ordering) of multi-byte I/O operations.

getBytes() - Method in class loci.common.ByteArrayHandle

Gets the byte array backing this FileHandle.

getBytes(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Get the bytes from an image, merging the channels as necessary.

getBytes() - Method in class loci.poi.hpsf.ClassID

Gets the bytes making out the class ID.

getBytes() - Method in class loci.poi.hssf.record.formula.Ptg

getBytes() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Method getBytes - get the bytes of just the HSSF portions of the XLS file.

getBytesPerElement() - Method in enum loci.formats.tiff.IFDType

Retrieves the number of bytes per element.

getBytesPerPixel(int) - Static method in class loci.formats.FormatTools

Retrieves how many bytes per pixel the current plane or section has.

getBytesPerPixel(String) - Static method in class loci.formats.FormatTools

Retrieves the number of bytes per pixel in the current plane.

getBytesPerPixel(int) - Method in class loci.formats.in.LegacyND2Reader

getBytesPerPixel(int) - Method in class loci.formats.in.SlideBook6Reader

getBytesPerSample() - Method in class loci.formats.tiff.IFD

Retrieves the image's bytes per sample (derived from tag BitsPerSample) from this IFD.

getByteValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getC() - Method in class loci.formats.gui.ImageViewer

Gets the C value of the currently displayed image.

getCache() - Method in class loci.formats.gui.CacheComponent

getCache() - Method in class loci.plugins.util.BFVirtualStack

getCacheListeners() - Method in class loci.formats.cache.Cache

getCacheListeners() - Method in interface loci.formats.cache.CacheReporter

Gets a list of all registered status update listeners.

getCacheListeners() - Method in class loci.formats.cache.CacheStrategy

getCacheOfSavedSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the cache of the saved size

getCacheOfSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the cache of the metafile size

getCalcMode() - Method in class loci.poi.hssf.record.CalcModeRecord

get the calc mode flag for formulas

getCalibratedMagnification() - Method in class ome.xml.model.Objective

getCalibrationTable() - Method in class loci.plugins.util.RecordedImageProcessor

getCameraModel() - Method in class loci.formats.in.ND2Handler

getCanonicalFile() - Method in class loci.common.Location

getCanonicalId() - Method in enum ome.jxr.ifd.PixelFormat

getCanonicalPath() - Method in class loci.common.Location

Returns the canonical path to this file.

getCategory() - Method in class loci.formats.in.BaseZeissReader.Tag

getCategory() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the category (or null).

getCategoryAxisCross() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the category axis cross field for the ValueRange record.

getCategoryDataType() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Get the category data type field for the DefaultDataLabelTextProperties record.

getCategoryDataType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the category data type field for the Series record.

getCategorySpace() - Method in class loci.poi.hssf.record.BarRecord

Get the category space field for the Bar record.

getCausalCXInfo() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets causalCXInfo

getCBegin(int) - Method in class loci.plugins.in.ImporterOptions

getCBegin(int) - Method in class loci.plugins.in.ImportProcess

getCBlkHeight(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the code-block height: for the specified tile/component for the specified tile for the specified component default value The value returned depends on the value of the variable 'type' which can take the following values : SPEC_DEF -> Default value is returned.

getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the code-block height for the specified tile and component.

getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the code-block height for the specified tile and component.

getCBlkInfo() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Gets the reference to the CBlkInfo array

getCBlkWidth(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the code-block width : for the specified tile/component for the specified tile for the specified component default value The value returned depends on the value of the variable 'type' which can take the following values :
SPEC_DEF -> Default value is returned.

getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the code-block width for the specified tile and component.

getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the code-block width for the specified tile and component.

getCbULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical code-block partition origin.

getCbULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the horizontal code-block partition origin.Allowable values are 0 and 1, nothing else.

getCbULX() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the horizontal code-block partition origin.

getCbULX() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the horizontal code-block partition origin.

getCbULX() - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the horizontal code-block partition origin.

getCbULX() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the horizontal code-block partition origin.

getCbULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the vertical code-block partition origin.

getCbULY() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the vertical offset of the code-block partition.

getCbULY() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the vertical code-block partition origin Allowable values are 0 and 1, nothing else.

getCCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

get the hssfcell representing a given column (logical cell) 0-based.

getCellComment() - Method in class loci.poi.hssf.usermodel.HSSFCell

Returns comment associated with this cell

getCellComment(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns cell comment for the specified row and column

getCellFormula() - Method in class loci.poi.hssf.usermodel.HSSFCell

getCellNum() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the cell's number within the row

getCellOffsetAt(int) - Method in class loci.poi.hssf.record.DBCellRecord

return the cell offset in the array

getCellOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

gets the options bitmask - you can also use corresponding option bit getters (see other methods that reference this one)

getCells() - Method in class loci.poi.hssf.util.AreaReference

return the cell references that define this area

getCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the style for the cell.

getCellStyleAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the cell style object at the given index

getCellType() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the cells type (numeric, formula or string)

getCellValueRecord() - Method in class loci.poi.hssf.usermodel.HSSFCell

Should only be used by HSSFSheet and friends.

getCEnd(int) - Method in class loci.plugins.in.ImporterOptions

getCEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCenter() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the center of the footer.

getCenter() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the center of the header.

getChannel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the defined channels.

getChannel(String) - Method in class loci.formats.in.CellomicsReader

getChannel() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the channel associated with this File.

getChannel(int) - Method in class loci.formats.in.ZeissTIFFReader

getChannel(int) - Method in class ome.xml.model.Pixels

getChannelAcquisitionMode(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelAcquisitionMode(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelAcquisitionMode(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AcquisitionMode property of Channel.

getChannelAcquisitionMode(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Channel.

getChannelAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Channel.

getChannelAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelColor(int) - Method in class loci.formats.in.LIFReader

getChannelColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Color property of Channel.

getChannelColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelColorFromFile(String) - Method in class loci.formats.in.MIASReader

Get the color associated with the given file's channel.

getChannelColors() - Method in class loci.formats.in.ND2Handler

getChannelContrastMethod(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelContrastMethod(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelContrastMethod(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ContrastMethod property of Channel.

getChannelContrastMethod(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelCount() - Method in class loci.formats.in.SDTReader

Gets the number of spectral channels.

getChannelCount() - Method in class loci.tests.testng.Configuration

getChannelCount(int) - Method in class ome.xml.meta.AggregateMetadata

getChannelCount(int) - Method in class ome.xml.meta.DummyMetadata

getChannelCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Channel elements.

getChannelCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelDescriptionNodes(Element) - Method in class loci.formats.in.LIFReader

getChannelDimCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getChannelDimLength(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions

getChannelDimType(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions

getChannelEmissionWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelEmissionWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelEmissionWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the EmissionWavelength property of Channel.

getChannelEmissionWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelExcitationWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelExcitationWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelExcitationWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExcitationWavelength property of Channel.

getChannelExcitationWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelFiller() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getChannelFilterSetRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelFilterSetRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelFilterSetRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FilterSetRef property of Channel.

getChannelFilterSetRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelFluor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelFluor(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelFluor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Fluor property of Channel.

getChannelFluor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelGlobalMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves a specified channel's global maximum.

getChannelGlobalMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves a specified channel's global minimum.

getChannelID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelID(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Channel.

getChannelID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelIlluminationType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelIlluminationType(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelIlluminationType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the IlluminationType property of Channel.

getChannelIlluminationType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelIndex(Element) - Method in class loci.formats.in.LIFReader

getChannelIndexOfCellObjectName(String) - Method in class loci.formats.in.CellH5Reader

getChannelKnownMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the specified channel's maximum based on the images that have been read.

getChannelKnownMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the specified channel's minimum based on the images that have been read.

getChannelLabel(int) - Method in class loci.formats.in.TextReader

Gets the label for the given channel.

getChannelLightSourceSettingsAttenuation(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelLightSourceSettingsAttenuation(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelLightSourceSettingsAttenuation(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Attenuation property of LightSourceSettings.

getChannelLightSourceSettingsAttenuation(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelLightSourceSettingsID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelLightSourceSettingsID(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelLightSourceSettingsID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of LightSourceSettings.

getChannelLightSourceSettingsID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelLightSourceSettingsWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelLightSourceSettingsWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelLightSourceSettingsWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Wavelength property of LightSourceSettings.

getChannelLightSourceSettingsWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getChannelName() - Method in class loci.formats.in.MetamorphHandler

getChannelName() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the channelName associated with this File.

getChannelName(int, int) - Method in class loci.formats.in.SlideBook6Reader

getChannelName(int) - Method in class loci.tests.testng.Configuration

getChannelName(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelName(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Channel.

getChannelName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelNames() - Method in class loci.formats.in.ND2Handler

getChannelNDFilter(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelNDFilter(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelNDFilter(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the NDFilter property of Channel.

getChannelNDFilter(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelPinholeSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelPinholeSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelPinholeSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PinholeSize property of Channel.

getChannelPinholeSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelPockelCellSetting(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelPockelCellSetting(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelPockelCellSetting(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PockelCellSetting property of Channel.

getChannelPockelCellSetting(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannels(int) - Method in class loci.formats.in.LegacyND2Reader

getChannelSamplesPerPixel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelSamplesPerPixel(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelSamplesPerPixel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SamplesPerPixel property of Channel.

getChannelSamplesPerPixel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelSeparator() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getChar(int) - Method in class loci.formats.tools.AsciiImage

GetChar() - Method in class loci.poi.hssf.model.FormulaParser

Read New Character From Input Stream

getCharacterPos() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

getCharCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the character count or 0 if the SummaryInformation does not contain a char count.

getCharCount() - Method in class loci.poi.hssf.record.UnicodeString

get the number of characters in the string

getCharPart(String) - Method in class loci.poi.hssf.util.RangeAddress

getCharset() - Method in class loci.poi.hssf.record.FontRecord

get the character set

getCharSet() - Method in class loci.poi.hssf.usermodel.HSSFFont

get character-set to use.

getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Get the chart group index field for the SeriesChartGroupIndex record.

getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Get the chart group index field for the SeriesToChartGroup record.

getCharWidth(char) - Method in class loci.poi.hssf.usermodel.FontDetails

Retrieves the width of the specified character.

getCheckboxes(GenericDialog) - Static method in class loci.plugins.util.WindowTools

getChild(Element, String) - Static method in class loci.formats.in.CellVoyagerReader

getChild(Element, String[]) - Static method in class loci.formats.in.CellVoyagerReader

getChild() - Method in class loci.plugins.util.RecordedImageProcessor

getChild(int) - Method in class loci.poi.ddf.EscherRecord

Returns the indexed child record.

getChild(int) - Method in class loci.poi.hssf.model.Node

getChildById(short) - Method in class loci.poi.ddf.EscherContainerRecord

getChildIndex(Integer, String) - Method in class loci.formats.in.VolocityReader

getChildIndex() - Method in class loci.poi.poifs.property.Property

Get the child property (its index in the Property Table)

getChildNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getChildNode(Node, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getChildNodes(Element) - Method in class loci.formats.in.OBFReader

getChildPolicy(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getChildRecords() - Method in class loci.poi.ddf.EscherContainerRecord

getChildRecords() - Method in class loci.poi.ddf.EscherRecord

getChildRecords() - Method in class loci.poi.ddf.UnknownEscherRecord

getChildren(Element, String) - Static method in class loci.formats.in.CellVoyagerReader

getChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Returns a list of all shapes contained by the patriarch.

getChildren() - Method in interface loci.poi.hssf.usermodel.HSSFShapeContainer

getChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Return all children contained by this shape.

getChildren() - Method in class loci.poi.poifs.property.DirectoryProperty

Get an iterator over the children of this Parent; all elements are instances of Property.

getChildren() - Method in interface loci.poi.poifs.property.Parent

Get an iterator over the children of this Parent; all elements are instances of Property.

getChildrenByTagName(Element, String) - Static method in class ome.xml.model.AbstractOMEModelObject

Retrieves all the children of an element that have a given tag name.

getChildText(Element, String[]) - Static method in class loci.formats.in.CellVoyagerReader

getChildText(Element, String) - Static method in class loci.formats.in.CellVoyagerReader

getChoices(GenericDialog) - Static method in class loci.plugins.util.WindowTools

getClasses() - Method in class loci.formats.ClassList

Gets the list of classes as an array.

getClassID() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "class ID" field.

getClassID() - Method in class loci.poi.hpsf.SpecialPropertySet

getClip() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getClipboardFormat() - Method in class loci.poi.hpsf.Thumbnail

Returns an int representing the Clipboard Format

getClipboardFormatTag() - Method in class loci.poi.hpsf.Thumbnail

Returns an int representing the Clipboard Format Tag

getClipBounds() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClipBounds(Rectangle) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getClipRect() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClipRect() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getCO2Percent() - Method in class ome.xml.model.ImagingEnvironment

getCode() - Method in interface loci.common.enumeration.CodedEnum

Retrieves the integer "code" for this enumeration.

getCode() - Method in enum loci.formats.codec.CompressionType

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.codec.JPEG2000BoxType

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.codec.JPEG2000SegmentMarker

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.tiff.IFDType

getCode() - Method in enum loci.formats.tiff.PhotoInterp

getCode() - Method in enum loci.formats.tiff.TiffCompression

getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Returns the specified coded code-block, for the specified component, in the current tile.

getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in interface jj2000.j2k.entropy.decoder.CodedCBlkDataSrcDec

Returns the specified coded code-block, for the specified component, in the current tile.

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlockSize() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets codeBlockSize.

getCodeBlockSize() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets codeBlockSize

getCodecName(int) - Method in class loci.formats.in.AVIReader

getCodecName() - Method in enum loci.formats.tiff.TiffCompression

Retrieves the name of the TIFF compression codec.

getCodecOptions() - Method in class loci.formats.tiff.TiffParser

Retrieves the current set of codec options being used to decompress pixel data.

getCodepage() - Method in class loci.poi.hpsf.CustomProperties

Gets the codepage.

getCodepage() - Method in class loci.poi.hpsf.Section

Gets the section's codepage, if any.

getCodepage() - Method in class loci.poi.hssf.record.CodepageRecord

get the codepage for this workbook

getCodepage() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

get the codepage for the file

getCodeSegSymbol() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets codeSegSymbol

getCodestreamOffset() - Method in class loci.formats.in.JPEG2000MetadataParser

Retrieves the offset to the first contiguous codestream.

getCodestreamPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the pixel type as specified in the header.

getCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method creates and returns an array of positions to contiguous codestreams in the file

getCodestreamSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of channels the image has as specified in the header.

getCodestreamSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the width of the image as specified in the header.

getCodestreamSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the height of the image as specified in the header.

getCol() - Method in class loci.poi.hssf.util.CellReference

getCol1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column number for the top-left position.

getCol1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getCol2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column of the bottom right corner of this shape.

getCol2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getColapsed() - Method in class loci.poi.hssf.record.RowRecord

get whether or not to colapse this row

getColInfo(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getCollapsed() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get whether the cells are collapsed

getColLevelMax() - Method in class loci.poi.hssf.record.GutsRecord

get the maximum outline level for the col gutter.

getColor(short) - Method in class loci.poi.hssf.record.PaletteRecord

Returns the color value at a given index

getColor() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getColor() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the color for the font

getColor(short) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Retrieves the color at a given index

getColor() - Method in class ome.xml.model.Channel

getColor() - Method in class ome.xml.model.Well

getColor1() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColor2() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColor3() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColor4() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns the currently set TIFFColorConverter object, or null if none is set.

getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the current TIFFColorConverter object that will be used to perform color conversion when writing the image, or null if none is set.

getColorFormat() - Method in enum ome.jxr.ifd.PixelFormat

getColorMap(IFD) - Method in class loci.formats.tiff.TiffParser

Retrieve the color map associated with the given IFD.

getColorMode() - Method in class loci.plugins.in.ImporterOptions

getColorModeInfo() - Method in class loci.plugins.in.ImporterOptions

getColorModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the ColorModel of the image.

getColorModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getColorModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getColorModel() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

Returns the color model created from the palette box.

getColorModel() - Method in class loci.formats.FormatWriter

getColorModel() - Method in interface loci.formats.IFormatWriter

Gets the color model.

getColorModel() - Method in class loci.formats.ImageWriter

getColorModel() - Method in class loci.formats.WriterWrapper

getColorModel() - Method in class loci.plugins.util.RecordedImageProcessor

getColorModes() - Method in class loci.plugins.in.ImporterOptions

getColorPaletteIndex() - Method in class loci.poi.hssf.record.FontRecord

get the font's color palette index

getColorSpace(Node) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

getColorSpace() - Method in class ome.jxr.ifd.IFDMetadata

getColorTable(Node, String, boolean, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getColorValue(TextField) - Method in class loci.plugins.in.ColorDialog

getColourPaletteIndex() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the colour palette index field for the LineFormat record.

getColumn() - Method in class loci.formats.in.OMEXMLReader.BinData

getColumn(String) - Method in class loci.formats.in.ScreenReader

getColumn(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor

getColumn() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getColumn() - Method in class loci.poi.hssf.record.BlankRecord

get the column this cell defines within the row

getColumn() - Method in class loci.poi.hssf.record.BoolErrRecord

getColumn() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

get the column this cell defines within the row

getColumn() - Method in class loci.poi.hssf.record.formula.ExpPtg

getColumn() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getColumn() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getColumn() - Method in class loci.poi.hssf.record.FormulaRecord

getColumn() - Method in class loci.poi.hssf.record.LabelRecord

getColumn() - Method in class loci.poi.hssf.record.LabelSSTRecord

getColumn() - Method in class loci.poi.hssf.record.NoteRecord

Return the column that contains the comment

getColumn() - Method in class loci.poi.hssf.record.NumberRecord

getColumn() - Method in class loci.poi.hssf.record.RKRecord

getColumn() - Method in class loci.poi.hssf.usermodel.HSSFComment

Return the column of the cell that contains the comment

getColumn() - Method in class mdbtools.dbengine.sql.FQColumn

getColumn(int) - Method in class mdbtools.dbengine.sql.Select

getColumn() - Method in class ome.xml.model.Well

getColumNames(int) - Method in interface loci.formats.services.MetakitService

getColumNames(int) - Method in class loci.formats.services.MetakitServiceImpl

getColumnBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns all the column page breaks

getColumnBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Retrieves all the vertical page breaks

getColumnCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg

getColumnCount() - Method in class mdbtools.dbengine.sql.Select

getColumnCount() - Method in interface mdbtools.dbengine.Table

getColumnCount() - Method in class mdbtools.dbengine.Tests.SimpleDataSourceTable

getColumnFrom() - Method in class loci.poi.hssf.util.Region

get the upper left hand corner column number

getColumnName(int) - Method in interface mdbtools.dbengine.Table

getColumnName(int) - Method in class mdbtools.dbengine.Tests.SimpleDataSourceTable

getColumnNames(String) - Method in interface loci.formats.services.MetakitService

getColumnNames(String) - Method in class loci.formats.services.MetakitServiceImpl

getColumnNames(int) - Method in class ome.metakit.MetakitReader

Retrieve the name of every column in the table with the given index.

getColumnNames(String) - Method in class ome.metakit.MetakitReader

Retrieve the name of every column in the named table.

getColumnNamingConvention() - Method in class ome.xml.model.Plate

getColumnRaw() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getColumnRaw() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getColumns() - Method in class ome.xml.model.Plate

getColumnTo() - Method in class loci.poi.hssf.util.Region

get the lower right hand corner column number

getColumnToSort(Object) - Method in class mdbtools.dbengine.tasks.SimpleSort

getColumnTypes(int) - Method in interface loci.formats.services.MetakitService

getColumnTypes(String) - Method in interface loci.formats.services.MetakitService

getColumnTypes(int) - Method in class loci.formats.services.MetakitServiceImpl

getColumnTypes(String) - Method in class loci.formats.services.MetakitServiceImpl

getColumnTypes(int) - Method in class ome.metakit.MetakitReader

Retrieve the type for every column in the table with the given index.

getColumnTypes(String) - Method in class ome.metakit.MetakitReader

Retrieve the type for every column in the named table.

getColumnWidth(short) - Method in class loci.poi.hssf.model.Sheet

get the width of a given column in units of 1/20th of a point width (twips?)

getColumnWidth() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the columns' width in 1/256 of a character width

getColumnWidth(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the width (in units of 1/256th of a character width )

getColWidth() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

get the default column width

getComment(int, int) - Method in class loci.formats.in.MetamorphReader

getComment() - Method in class loci.formats.tiff.IFD

Convenience method for obtaining the ImageDescription from this IFD.

getComment() - Method in class loci.formats.tiff.TiffParser

Convenience method for obtaining a stream's first ImageDescription.

getCommentAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getCommentAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a CommentAnnotation.

getCommentAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of CommentAnnotation.

getCommentAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of CommentAnnotation.

getCommentAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of CommentAnnotation elements.

getCommentAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of CommentAnnotation.

getCommentAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of CommentAnnotation.

getCommentAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of CommentAnnotation.

getCommentAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of CommentAnnotation.

getCommentAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getComments() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getComments() - Method in class loci.formats.in.JPEG2000MetadataParser

Retrieves the list of comments stored in the file.

getComments() - Method in class loci.poi.hpsf.SummaryInformation

Returns the comments (or null).

getCompany() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the company (or null).

getCompatibilityList() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the compatibilty list of this file type box.

getCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply forward component transformation associated with the current tile.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component, using the 'transfer type' specified in the block given as argument.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply inverse component transformation associated with the current tile.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns a block of image data containing the specifed rectangular area, in the specified component, as a copy (see below).

getCompDef(int) - Method in class jj2000.j2k.ModuleSpec

Gets default value of the specified component.

getCompHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the height in pixels of the specified component in the current tile.

getCompImgHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getCompImgHeight(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the height in pixels of the specified component in the overall image, for the given (component) resolution level.

getCompImgHeight(int) - Method in interface jj2000.j2k.image.ImgData

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the height in pixels of the specified component in the overall image, for the given resolution level.

getCompImgHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the height in pixels of the specified component in the overall image, for the given resolution level.

getCompImgWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

Width of the specified tile-component

getCompImgWidth(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the width in pixels of the specified component in the overall image, for the given (component) resolution level.

getCompImgWidth(int) - Method in interface jj2000.j2k.image.ImgData

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the width in pixels of the specified component in the overall image, for the given resolution level.

getCompImgWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the width in pixels of the specified component in the overall image, for the given resolution level.

getComplexData() - Method in class loci.poi.ddf.EscherComplexProperty

Get the complex data value.

getComponent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

getComponent(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel

getComponent(int) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

get the specified component

getComponentAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

getComponentTransformation() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets componentTransformation.

getComponentTransformation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets componentTransformation

getComponentType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

getComposite() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getComposite() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getCompressedSize() - Method in class loci.poi.ddf.EscherMetafileBlip

getCompressedSize() - Method in class loci.poi.ddf.EscherPictBlip

getCompressedSize() - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Returns the size of the image (in bytes) generated by the most recent compress/encode operation.

getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.BoundSheetRecord

get whether or not to interperate the Sheetname as compressed unicode (8/16 bit) (This is undocumented but can be found as Q187919 on the Microsoft(tm) Support site)

getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.NameRecord

gets the name compressed Unicode flag

getCompression() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getCompression() - Method in enum loci.formats.codec.CompressionType

Returns the compression.

getCompression(String) - Method in class loci.formats.FormatReader

Retrieves an Compression enumeration value for the given String.

getCompression() - Method in class loci.formats.FormatWriter

getCompression() - Method in interface loci.formats.IFormatWriter

Gets the current compression type.

getCompression() - Method in class loci.formats.ImageWriter

getCompression(int) - Method in class loci.formats.in.OBFReader

getCompression() - Method in class loci.formats.tiff.IFD

Retrieves the image's compression type (TIFF tag Compression) from this IFD.

getCompression() - Method in class loci.formats.WriterWrapper

getCompression() - Method in class ome.xml.model.BinData

getCompression() - Method in class ome.xml.model.External

getCompressionCodecOptions(IFD) - Method in enum loci.formats.tiff.TiffCompression

Creates a set of codec options for compression.

getCompressionCodecOptions(IFD, CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Creates a set of codec options for compression.

getCompressionFlag() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Is the contents of the blip compressed?

getCompressionMap() - Static method in enum loci.formats.tiff.TiffCompression

getCompressionTagValue() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieve the value to be assigned to the TIFF Compression tag in the TIFF image metadata.

getCompressionType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieve the name of the compression type supported by this compressor.

getCompressionType(String) - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getCompressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the compression type.

getCompressionTypes() - Method in class loci.formats.FormatWriter

getCompressionTypes() - Method in interface loci.formats.IFormatWriter

Gets the available compression types.

getCompressionTypes() - Method in class loci.formats.ImageWriter

getCompressionTypes() - Method in class loci.formats.WriterWrapper

getCompSize(IndexColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Gets the size of the components or the bit depth for all the color coomponents.

getCompSubsX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the component sub-sampling factor, with respect to the reference grid, along the horizontal direction for the specified component.

getCompSubsX(int) - Method in interface jj2000.j2k.image.ImgData

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the component sub-sampling factor, with respect to the reference grid, along the vertical direction for the specified component.

getCompSubsY(int) - Method in interface jj2000.j2k.image.ImgData

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompULX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal coordinate of the upper-left corner of the active tile, with respect to the canvas origin, in the component coordinates, for the specified component.

getCompULX(int) - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.Tiler

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the vertical coordinate of the upper-left corner of the active tile, with respect to the canvas origin, in the component coordinates, for the specified component.

getCompULY(int) - Method in interface jj2000.j2k.image.ImgData

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.Tiler

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width in pixels of the specified component in the current tile.

getConcatenateInfo() - Method in class loci.plugins.in.ImporterOptions

getConfig(String) - Method in class loci.formats.in.PrairieMetadata

Gets the value of the given configuration key.

getConfig() - Method in class loci.formats.in.PrairieMetadata

Gets the map of configuration key/value pairs.

getConfigDirectory() - Method in class loci.tests.testng.ConfigurationTree

Returns the base directory holding the configuration files

getConstraintsForCell(int, int, Container, int) - Static method in class loci.plugins.config.SpringUtilities

getConstructor(Class<T>) - Method in class loci.common.services.ServiceFactory

Retrieves a constructor for a given class from the constructor cache if possible.

getContent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box content in byte array.

getContents() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources

getContrastMethod(String) - Method in class loci.formats.FormatReader

Retrieves an ContrastMethod enumeration value for the given String.

getContrastMethod() - Method in class ome.xml.model.Channel

getCopies() - Method in class loci.poi.hssf.record.PrintSetupRecord

getCopies() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of copies.

getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.COD

getCopy(int) - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a copy of this object

getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getCopy() - Method in class jj2000.j2k.decoder.DecoderSpecs

Returns a copy of the current object.

getCopy() - Method in class jj2000.j2k.ModuleSpec

getCopyrightNotice() - Method in class ome.jxr.ifd.IFDMetadata

getCoreIndex() - Method in class loci.formats.FileStitcher

getCoreIndex() - Method in class loci.formats.FormatReader

getCoreIndex() - Method in interface loci.formats.IFormatReader

Return the index into CoreMetadata of the current resolution/series.

getCoreIndex() - Method in class loci.formats.ImageReader

getCoreIndex() - Method in class loci.formats.in.FilePatternReader

getCoreIndex() - Method in class loci.formats.ReaderWrapper

getCoreMetadataList() - Method in class loci.formats.DimensionSwapper

getCoreMetadataList() - Method in class loci.formats.FileStitcher

getCoreMetadataList() - Method in class loci.formats.FormatReader

getCoreMetadataList() - Method in interface loci.formats.IFormatReader

Obtains the core metadata values for the current file.

getCoreMetadataList() - Method in class loci.formats.ImageReader

getCoreMetadataList() - Method in class loci.formats.in.FilePatternReader

getCoreMetadataList() - Method in class loci.formats.in.LeicaHandler

getCoreMetadataList() - Method in class loci.formats.in.ND2Handler

getCoreMetadataList() - Method in class loci.formats.ReaderWrapper

getCorrection(String) - Method in class loci.formats.FormatReader

Retrieves an Correction enumeration value for the given String.

getCorrection() - Method in class loci.formats.in.ND2Handler

getCorrection() - Method in class ome.xml.model.Objective

getCorrectionCollar() - Method in class ome.xml.model.ObjectiveSettings

getCount() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the number of data items present in the field.

getCount() - Method in class loci.formats.FilePattern

getCount() - Method in class loci.poi.hssf.record.FnGroupCountRecord

get the number of built-in functions

getCount() - Method in enum ome.jxr.ifd.IFDEntry

getCreateDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the creation time (or null).

getCreationDate() - Method in interface loci.formats.services.EXIFService

getCreationDate() - Method in class loci.formats.services.EXIFServiceImpl

getCreator() - Method in class ome.xml.model.OME

getCropInfo() - Method in class loci.plugins.in.ImporterOptions

getCropRegion(int) - Method in class loci.plugins.in.ImporterOptions

getCropRegion(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCrossingPoint() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the crossing point field for the AxisOptions record.

getCrossingPoint() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the crossing point field for the CategorySeriesAxis record.

getCStep(int) - Method in class loci.plugins.in.ImporterOptions

getCStep(int) - Method in class loci.plugins.in.ImportProcess

getCurrentColorModel() - Method in class loci.plugins.util.RecordedImageProcessor

getCurrentCountry() - Method in class loci.poi.hssf.record.CountryRecord

gets the current country

getCurrentFile() - Method in class loci.formats.FormatReader

getCurrentFile() - Method in interface loci.formats.IFormatReader

Returns the current file.

getCurrentFile() - Method in class loci.formats.ImageReader

getCurrentFile() - Method in class loci.formats.ReaderWrapper

getCurrentFile() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCurrentFile(String[]) - Method in class loci.plugins.macro.LociFunctions

getCurrentPos() - Method in class loci.formats.cache.Cache

Gets the current dimensional position.

getCustomColor(int, int) - Method in class loci.plugins.in.ImporterOptions

getCustomColorKey(int, int) - Method in class loci.plugins.in.ImporterOptions

getCustomMenuLength() - Method in class loci.poi.hssf.record.NameRecord

gets the custom menu length

getCustomMenuText() - Method in class loci.poi.hssf.record.NameRecord

get the custom menu text

getCustomPalette() - Method in class loci.poi.hssf.model.Workbook

Returns the custom palette in use for this workbook; if a custom palette record does not exist, then it is created.

getCustomPalette() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

getCustomProperties() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Gets the custom properties.

getCutIn(Double) - Static method in class loci.formats.FormatTools

getCutIn() - Method in class ome.xml.model.TransmittanceRange

getCutInTolerance() - Method in class ome.xml.model.TransmittanceRange

getCutInToleranceUnitXsdDefault() - Static method in class ome.xml.model.TransmittanceRange

getCutInUnitXsdDefault() - Static method in class ome.xml.model.TransmittanceRange

getCutOut(Double) - Static method in class loci.formats.FormatTools

getCutOut() - Method in class ome.xml.model.TransmittanceRange

getCutOutTolerance() - Method in class ome.xml.model.TransmittanceRange

getCutOutToleranceUnitXsdDefault() - Static method in class ome.xml.model.TransmittanceRange

getCutOutUnitXsdDefault() - Static method in class ome.xml.model.TransmittanceRange

getCycle() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the cycle associated with this Sequence.

getCycleCount() - Method in class loci.formats.in.PrairieMetadata

Gets the number of recorded cycles.

getCycleMax() - Method in class loci.formats.in.PrairieMetadata

Gets the maximum cycle value.

getCycleMin() - Method in class loci.formats.in.PrairieMetadata

Gets the minimum cycle value.

getCZTag(IFD) - Method in class loci.formats.in.ZeissLSMReader

getData() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a reference to the data object associated with the field.

getData() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the entire image in a single Raster.

getData(Rectangle) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns an arbitrary rectangular region of the RenderedImage in a Raster.

getData() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Returns the UUID data of this box.

getData() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getData(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getData() - Method in class jj2000.j2k.image.DataBlk

Returns the array containing the data, or null if there is no data.

getData() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the array containing the data, or null if there is no data array.

getData() - Method in class jj2000.j2k.image.DataBlkInt

Returns the array containing the data, or null if there is no data array.

getData(DataBlk, int, boolean) - Method in class jj2000.j2k.image.ImgDataConverter

Implements the 'getInternCompData()' and the 'getCompData()' methods.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Returns the array containing the data, or null if there is no data.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the array containing the data, or null if there is no data array.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the array containing the data, or null if there is no data array.

getData() - Method in class loci.formats.gui.SignedByteBuffer

getData(int) - Method in class loci.formats.gui.SignedByteBuffer

getData() - Method in class loci.formats.gui.SignedShortBuffer

getData(int) - Method in class loci.formats.gui.SignedShortBuffer

getData() - Method in class loci.formats.gui.UnsignedIntBuffer

getData(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getData() - Method in class loci.poi.ddf.EscherBlipWMFRecord

The BLIP data

getData() - Method in class loci.poi.ddf.EscherTextboxRecord

Returns any extra data associated with this record.

getData() - Method in class loci.poi.ddf.UnknownEscherRecord

getData() - Method in class loci.poi.hssf.record.ContinueRecord

get the data for continuation

getData() - Method in class loci.poi.hssf.record.DrawingRecord

getData() - Method in class loci.poi.hssf.record.formula.AttrPtg

getData() - Method in class loci.poi.hssf.usermodel.HSSFPictureData

Gets the picture data.

getData() - Method in interface loci.poi.poifs.storage.ListManagedBlock

Get the data from the block

getData() - Method in class loci.poi.poifs.storage.RawDataBlock

Get the data from the block

getData() - Method in class loci.poi.poifs.storage.SmallDocumentBlock

Get the data from the block

getData(int) - Method in class loci.poi.util.BinaryTree.Node

get the specified data

getData() - Method in class mdbtools.dbengine.SelectEngine

Resolve the from clause to a single set of data

getData() - Method in interface mdbtools.dbengine.Table

getData() - Method in class mdbtools.dbengine.Tests.SimpleDataSourceTable

getDataElements(int, Object) - Method in class loci.formats.gui.Index16ColorModel

getDataElements(int, Object) - Method in class loci.formats.gui.SignedColorModel

getDataElements(int, Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getDataFloat() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the array containing the data, or null if there is no data array.

getDataFloat() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the array containing the data, or null if there is no data array.

getDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the index of the format

getDataFormatString(Workbook) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

Get the contents of the format string, by looking up the DataFormat against the supplied workbook

getDataInt() - Method in class jj2000.j2k.image.DataBlkInt

Returns the array containing the data, or null if there is no data array.

getDataInt() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the array containing the data, or null if there is no data array.

getDataLabelPlacement() - Method in class loci.poi.hssf.record.TextRecord

getDataset(int) - Method in class ome.xml.model.OME

getDatasetAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getDatasetAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Dataset.

getDatasetAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Dataset.

getDatasetAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetCount() - Method in class ome.xml.meta.AggregateMetadata

getDatasetCount() - Method in class ome.xml.meta.DummyMetadata

getDatasetCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Dataset elements.

getDatasetCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetDescription(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Dataset.

getDatasetDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetExperimenterGroupRef(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetExperimenterGroupRef(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetExperimenterGroupRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterGroupRef property of Dataset.

getDatasetExperimenterGroupRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of Dataset.

getDatasetExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetID(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetID(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Dataset.

getDatasetID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetImageRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetImageRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getDatasetImageRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ImageRef property of Dataset.

getDatasetImageRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetImageRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetImageRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetImageRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ImageRef elements in Dataset.

getDatasetImageRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetName(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetName(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Dataset.

getDatasetName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of DatasetRef elements.

getDatasetRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetStructureDescription() - Method in class loci.formats.FormatReader

getDatasetStructureDescription() - Method in interface loci.formats.IFormatReader

Returns a short description of the dataset structure.

getDatasetStructureDescription() - Method in class loci.formats.ImageReader

getDatasetStructureDescription() - Method in class loci.formats.in.FilePatternReader

getDatasetStructureDescription() - Method in class loci.formats.ReaderWrapper

getDataType() - Method in class jj2000.j2k.image.DataBlk

Returns the data type of the DataBlk object, as defined in this class.

getDataType() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the identifier of this data type, TYPE_FLOAT, as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.image.DataBlkInt

Returns the identifier of this data type, TYPE_INT, as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_FLOAT for this class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_INT for this class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Returns the data type of the CBlkWTData object, as defined in the DataBlk class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the identifier of this data type, TYPE_FLOAT, as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the data type of this object, always DataBlk.TYPE_INT.

getDataType(int, int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Return the data type of this CBlkWTDataSrc for the given component in the current tile.

getDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Return the data type of this CBlkWTDataSrc.

getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_FLOAT for this class.

getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_INT for this class.

getDataType() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the type of data on which this filter works, as defined in the DataBlk interface.

getDatatype() - Method in enum ome.jxr.ifd.PixelType

getDataTypeFromNumBits(int, boolean) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

getDataTypes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns a bit mask indicating the set of data types that may be used to store the data associated with the tag.

getDataTypeSize(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Return the number of bits occupied by dataType which must be one of the DataBuffer TYPEs.

getDate() - Method in class loci.formats.in.MetamorphHandler

getDate() - Method in class loci.formats.in.ND2Handler

getDate() - Method in class loci.formats.in.PrairieMetadata

Gets the date of the acquisition.

getDate() - Method in class loci.tests.testng.Configuration

getDateCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a date.

getDatestamp() - Method in class loci.formats.in.SVSReader

getDateTime() - Method in class ome.jxr.ifd.IFDMetadata

getDbcellAt(int) - Method in class loci.poi.hssf.record.IndexRecord

getDebugInfo() - Method in class loci.poi.hssf.record.UnicodeString

return a character representation of the fields of this record

getDecoderSpecs() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the DecoderSpecs instance filled when reading the headers

getDecodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Gets decodingRate.

getDecomp(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the wavelet tree decomposition.

getDecomp(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the wavelet tree decomposition.

getDecompLevels(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the number of decomposition levels that are applied to obtain the LL band, in the specified tile-component.

getDecompLevels(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the number of decomposition levels that are applied to the LL band, in the specified tile-component.

getDecompositionLevel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets decompositionLevel

getDecompressedImage() - Method in class ome.jxr.JXRReader

getDecompressedStream(String) - Method in class loci.formats.in.CellomicsReader

getDecompType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the decomposition type to be used in component 'n' and tile 't'.

getDecSpecType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the type of specification for the decomposition in the specified component and tile.

getDefault() - Method in class jj2000.j2k.ModuleSpec

Gets default value for this module.

getDefault() - Method in class loci.plugins.prefs.BooleanOption

Gets the default value of the option.

getDefault() - Method in class loci.plugins.prefs.DoubleOption

Gets the default value of the option.

getDefault() - Method in class loci.plugins.prefs.StringOption

Gets the default value of the option.

getDefaultColorModel() - Method in class loci.plugins.util.RecordedImageProcessor

getDefaultColumnWidth() - Method in class loci.poi.hssf.model.Sheet

get the default column width for the sheet (if the columns do not define their own width)

getDefaultColumnWidth() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default column width for the sheet (if the columns do not define their own width) in characters

getDefaultConfiguration() - Static method in class loci.formats.gui.AWTImageTools

Gets the default graphics configuration for the environment.

getDefaultCountry() - Method in class loci.poi.hssf.record.CountryRecord

gets the default country

getDefaultCustomColor(int) - Method in class loci.plugins.in.ImporterOptions

getDefaultHeader() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display a default header

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AddPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AreaPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ArrayPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AttrPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.BoolPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ErrPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ExpPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the default operands class value

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.IntPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the default operands class value

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MissingArgPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NamePtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NameXPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NumberPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.OperationPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.PercentPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ptg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.StringPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnknownPtg

getDefaultOptions() - Static method in class loci.formats.codec.CodecOptions

Return CodecOptions with reasonable default values.

getDefaultOptions() - Static method in class loci.formats.codec.JPEG2000CodecOptions

Return JPEG2000CodecOptions with reasonable default values.

getDefaultOptions(CodecOptions) - Static method in class loci.formats.codec.JPEG2000CodecOptions

Return JPEG2000CodecOptions using the given CodecOptions as the default.

getDefaultReaderClasses() - Static method in class loci.formats.ImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet

get the default row height for the sheet (if the rows do not define their own height)

getDefaultRowHeight() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default row height for the sheet (if the rows do not define their own height) in twips (1/20 of a point)

getDefaultRowHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default row height for the sheet (if the rows do not define their own height) in points.

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

getDefaultValue(String) - Method in class loci.plugins.prefs.OptionsList

Gets the default value of the string option with the given key.

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

getDefaultWriterClasses() - Static method in class loci.formats.ImageWriter

getDefinitionLength() - Method in class loci.poi.hssf.record.NameRecord

get the definition length

getDelMenuCount() - Method in class loci.poi.hssf.record.MMSRecord

get number of add del options (should be 0)

getDeltaT(int) - Method in class loci.tests.testng.Configuration

getDeltaT() - Method in class ome.xml.model.Plane

getDeltaTUnitXsdDefault() - Static method in class ome.xml.model.Plane

getDenom() - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor

Returns denominator

getDenominator() - Method in class loci.formats.tiff.TiffRational

Gets this number's denominator.

getDenominator() - Method in class loci.poi.hssf.record.SCLRecord

Get the denominator field for the SCL record.

getDenominator() - Method in class ome.jxr.ifd.JXRRational

getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.DequantizerParams

Returns the type of the dequantizer for which the parameters are.

getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

Returns the type of the dequantizer for which the parameters are.

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi

getDescription() - Method in class loci.formats.gui.ComboFileFilter

Returns the filter's description.

getDescription() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's description.

getDescription() - Method in class loci.formats.gui.FormatFileFilter

Gets the filter's description.

getDescription() - Method in class loci.formats.gui.NoExtensionFileFilter

Gets the filter's description.

getDescription() - Method in class loci.poi.ddf.EscherPropertyMetaData

getDescription() - Method in class ome.xml.model.Annotation

getDescription() - Method in class ome.xml.model.Dataset

getDescription() - Method in class ome.xml.model.Experiment

getDescription() - Method in class ome.xml.model.ExperimenterGroup

getDescription() - Method in class ome.xml.model.Image

getDescription() - Method in class ome.xml.model.MicrobeamManipulation

getDescription() - Method in class ome.xml.model.Plate

getDescription() - Method in class ome.xml.model.PlateAcquisition

getDescription() - Method in class ome.xml.model.Project

getDescription() - Method in class ome.xml.model.Reagent

getDescription() - Method in class ome.xml.model.ROI

getDescription() - Method in class ome.xml.model.Screen

getDescriptionText() - Method in class loci.poi.hssf.record.NameRecord

gets the description text

getDescriptionTextLength() - Method in class loci.poi.hssf.record.NameRecord

gets the description text length

getDeser() - Method in class loci.formats.Memoizer

Returns a configured Kryo instance.

getDeserializer() - Method in class loci.poi.hssf.record.SSTRecord

getDestination(ImageReadParam, Iterator, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getDestinationRegion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getDestinationType(ImageReadParam, Iterator) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Gets the destination image type.

getDetector(int) - Method in class loci.tests.testng.Configuration

getDetector() - Method in class ome.xml.model.DetectorSettings

getDetector(int) - Method in class ome.xml.model.Instrument

getDetectorAmplificationGain(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorAmplificationGain(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorAmplificationGain(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AmplificationGain property of Detector.

getDetectorAmplificationGain(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Detector.

getDetectorAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Detector.

getDetectorAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorCount(int) - Method in class ome.xml.meta.DummyMetadata

getDetectorCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Detector elements.

getDetectorCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorGain(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorGain(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorGain(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Gain property of Detector.

getDetectorGain(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorID(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Detector.

getDetectorID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Detector.

getDetectorLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Detector.

getDetectorManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Detector.

getDetectorModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorOffset(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorOffset(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorOffset(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Offset property of Detector.

getDetectorOffset(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Detector.

getDetectorSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettings() - Method in class ome.xml.model.Channel

getDetectorSettingsBinning(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsBinning(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsBinning(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Binning property of DetectorSettings.

getDetectorSettingsBinning(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsGain(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsGain(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsGain(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Gain property of DetectorSettings.

getDetectorSettingsGain(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsID(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of DetectorSettings.

getDetectorSettingsID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsIntegration(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsIntegration(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsIntegration(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Integration property of DetectorSettings.

getDetectorSettingsIntegration(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsOffset(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsOffset(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsOffset(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Offset property of DetectorSettings.

getDetectorSettingsOffset(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsReadOutRate(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsReadOutRate(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsReadOutRate(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ReadOutRate property of DetectorSettings.

getDetectorSettingsReadOutRate(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsVoltage(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsVoltage(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsVoltage(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Voltage property of DetectorSettings.

getDetectorSettingsVoltage(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsZoom(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsZoom(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsZoom(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Zoom property of DetectorSettings.

getDetectorSettingsZoom(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorType(String) - Method in class loci.formats.FormatReader

Retrieves an DetectorType enumeration value for the given String.

getDetectorType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorType(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Detector.

getDetectorType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorVoltage(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorVoltage(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorVoltage(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Voltage property of Detector.

getDetectorVoltage(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorZoom(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorZoom(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorZoom(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Zoom property of Detector.

getDetectorZoom(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDeviceclip() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getDeviceSubtype(String) - Method in class loci.formats.in.CellSensReader

getDgg() - Method in class loci.poi.hssf.model.DrawingManager

getDgg() - Method in class loci.poi.hssf.model.DrawingManager2

getDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Not sure what this is for (maybe fill lines?) 1 = down, 2 = up, 3 = both, 0 for none..

getDialog() - Method in class loci.poi.hssf.record.WSBoolRecord

get whether sheet is a dialog sheet or not

getDialog() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether sheet is a dialog sheet or not

getDichroic(int) - Method in class ome.xml.model.Instrument

getDichroicAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Dichroic.

getDichroicAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Dichroic.

getDichroicAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicCount(int) - Method in class ome.xml.meta.DummyMetadata

getDichroicCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Dichroic elements.

getDichroicCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicID(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Dichroic.

getDichroicID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Dichroic.

getDichroicLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Dichroic.

getDichroicManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Dichroic.

getDichroicModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Dichroic.

getDichroicSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDictionary() - Method in class loci.poi.hpsf.CustomProperties

Gets the dictionary which contains IDs and names of the named custom properties.

getDictionary() - Method in class loci.poi.hpsf.Section

Gets the section's dictionary.

getDigitPart(String) - Method in class loci.poi.hssf.util.RangeAddress

getDim() - Method in class loci.poi.hssf.util.AreaReference

return the dimensions of this area

getDimension(String) - Method in class loci.formats.in.ZeissTIFFHandler.Scaling

Get a dimension by its index.

getDimension(String) - Method in interface loci.formats.services.NetCDFService

Retrieves the length of a dimension.

getDimension(String) - Method in class loci.formats.services.NetCDFServiceImpl

getDimensionDescriptionNodes(Element) - Method in class loci.formats.in.LIFReader

getDimensionOrder() - Method in class loci.formats.ChannelMerger

getDimensionOrder() - Method in class loci.formats.ChannelSeparator

getDimensionOrder() - Method in class loci.formats.DimensionSwapper

getDimensionOrder() - Method in class loci.formats.FileStitcher

getDimensionOrder() - Method in class loci.formats.FormatReader

getDimensionOrder(String) - Method in class loci.formats.FormatReader

Retrieves an DimensionOrder enumeration value for the given String.

getDimensionOrder() - Method in interface loci.formats.IFormatReader

Gets a five-character string representing the dimension order in which planes will be returned.

getDimensionOrder() - Method in class loci.formats.ImageReader

getDimensionOrder() - Method in class loci.formats.in.FilePatternReader

getDimensionOrder() - Method in class loci.formats.ReaderWrapper

getDimensionOrder(String[]) - Method in class loci.plugins.macro.LociFunctions

getDimensionOrder() - Method in class loci.tests.testng.Configuration

getDimensionOrder() - Method in class ome.xml.model.Pixels

getDimensionSwapper() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getDimsLoc() - Method in class loci.poi.hssf.model.Sheet

get the location of the DimensionsRecord (which is the last record before the value section)

getDirectory(String) - Method in class loci.formats.services.NetCDFServiceImpl

getDirectory() - Method in class loci.poi.hssf.usermodel.HSSFObjectData

Gets the object data.

getDirectoryAsIFD(TIFFDirectory) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Converts a TIFFDirectory to a TIFFIFD.

getDiscriminatingValue(ILoggingEvent) - Method in class loci.tests.testng.ThreadNameBasedDiscriminator

getDisplayedTab() - Method in class loci.poi.hssf.record.WindowOneRecord

get the displayed tab number

getDisplayedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

sets the first tab that is displayed in the list of tabs in excel.

getDisplayFormulas() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display formulas

getDisplayGridlines() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display gridlines

getDisplayGuts() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the outline symbols are displaed

getDisplayGuts() - Method in class loci.poi.hssf.record.WSBoolRecord

get whether to display the guts or not

getDisplayGuts() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether to display the guts or not

getDisplayHorizontalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the horizontal scrollbar or not

getDisplayMode() - Method in class loci.poi.hssf.record.TextRecord

Get the display mode field for the Text record.

getDisplayRowColHeadings() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display row and column headings

getDisplayTabs() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the tabs or not

getDisplayVerticalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the vertical scrollbar or not

getDisplayZeros() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display zero values

getDocparts() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the doc parts (or null) when this method is implemented.

getDocument() - Method in class loci.formats.gui.XMLWindow

Gets the XML document currently being displayed within the window.

getDocument() - Method in class loci.poi.poifs.filesystem.DocumentNode

get the POIFSDocument

getDocument() - Method in class loci.poi.poifs.property.DocumentProperty

get the POIFSDocument

getDocumentBytes(String) - Method in interface loci.formats.services.POIService

Retrieve all of the raw bytes that correspond to the given file name.

getDocumentBytes(String, int) - Method in interface loci.formats.services.POIService

Retrieve at most 'length' bytes that correspond to the given file name.

getDocumentBytes(String) - Method in class loci.formats.services.POIServiceImpl

getDocumentBytes(String, int) - Method in class loci.formats.services.POIServiceImpl

getDocumentList() - Method in interface loci.formats.services.POIService

Retrieve a list of all files in the current POI file system.

getDocumentList() - Method in class loci.formats.services.POIServiceImpl

getDocumentName() - Method in class ome.jxr.ifd.IFDMetadata

getDocumentProperty() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Get the DocumentProperty

getDocumentStream(String) - Method in interface loci.formats.services.POIService

Retrieve a RandomAccessInputStream corresponding to the given file name.

getDocumentStream(String) - Method in class loci.formats.services.POIServiceImpl

getDocumentSummaryInformation() - Method in class loci.poi.POIDocument

Fetch the Document Summary Information of the document

getDocumentSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

Returns the Document Summary Information properties singleton.

getDomains() - Method in class loci.formats.FormatReader

getDomains() - Method in interface loci.formats.IFormatReader

Returns the list of domains represented by the current file.

getDomains() - Method in class loci.formats.ImageReader

getDomains() - Method in class loci.formats.in.CellomicsReader

getDomains() - Method in class loci.formats.in.FilePatternReader

getDomains() - Method in class loci.formats.in.ICSReader

getDomains() - Method in class loci.formats.in.MetamorphTiffReader

getDomains() - Method in class loci.formats.in.NiftiReader

getDomains() - Method in class loci.formats.in.OMETiffReader

getDomains() - Method in class loci.formats.in.OMEXMLReader

getDomains() - Method in class loci.formats.ReaderWrapper

getDouble(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a double value from a byte array, reads it in little endian format then converts the resulting revolting IEEE 754 (curse them) floating point number to a happy java double

getDouble(byte[]) - Static method in class loci.poi.util.LittleEndian

get a double value from the beginning of a byte array

getDouble() - Method in class ome.jxr.ifd.JXRRational

getDoubleAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getDoubleAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a DoubleAnnotation.

getDoubleAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of DoubleAnnotation.

getDoubleAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of DoubleAnnotation.

getDoubleAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of DoubleAnnotation elements.

getDoubleAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of DoubleAnnotation.

getDoubleAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of DoubleAnnotation.

getDoubleAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of DoubleAnnotation.

getDoubleAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of DoubleAnnotation.

getDoubleAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAttribute(Node, String, double, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getDoubleAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getDoubles(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubles(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubles(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubleValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getDoubleValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock

getDraft() - Method in class loci.poi.hssf.record.PrintSetupRecord

getDraft() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the draft mode.

getDrawAreaHeight() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getDrawAreaWidth() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getDrawingGroup(int) - Method in class loci.poi.hssf.model.DrawingManager2

getDrawingGroupId() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster

getDrawingGroupId() - Method in class loci.poi.ddf.EscherDgRecord

Gets the drawing group id for this record.

getDrawingManager() - Method in class loci.poi.hssf.model.Workbook

getDrawingsSaved() - Method in class loci.poi.ddf.EscherDggRecord

getDsf() - Method in class loci.poi.hssf.record.DSFRecord

get the DSF flag

getDT(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getDX(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getDx1() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Retrieves offset within the parent coordinate space for the top left point.

getDx1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset within the top-left cell.

getDx1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDx2() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Retrieves offset within the parent coordinate space for the bottom right point.

getDx2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset withing the cell for the bottom-right corner of this shape.

getDx2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDY(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getDy1() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Gets offset within the parent coordinate space for the top left point.

getDy1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset within the top-left corner of the current shape.

getDy1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDy2() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Gets the offset within the parent coordinate space for the bottom right point.

getDy2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset withing the cell for the bottom-right corner of this shape.

getDy2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDZ(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getEditTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the total time spent in editing the document (or 0).

getEffectiveSeries(int) - Method in class loci.formats.in.ZeissLSMReader

getEffectiveSizeC() - Method in class loci.formats.FormatReader

getEffectiveSizeC() - Method in interface loci.formats.IFormatReader

Gets the effective size of the C dimension, guaranteeing that getEffectiveSizeC() * getSizeZ() * getSizeT() == getImageCount() regardless of the result of isRGB().

getEffectiveSizeC() - Method in class loci.formats.ImageReader

getEffectiveSizeC() - Method in class loci.formats.in.FilePatternReader

getEffectiveSizeC() - Method in class loci.formats.ReaderWrapper

getEffectiveSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions

getElapsedTime(int, int) - Method in class loci.formats.in.SlideBook6Reader

getElem(int) - Method in class loci.formats.gui.SignedByteBuffer

getElem(int, int) - Method in class loci.formats.gui.SignedByteBuffer

getElem(int, int) - Method in class loci.formats.gui.SignedShortBuffer

getElem(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElem(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElemDouble(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElemDouble(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElement(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getElement(int) - Method in class loci.poi.ddf.EscherArrayProperty

getElementDescription(String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementInfo(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementMaxChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementMinChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElements() - Method in class loci.formats.FilePattern

getElements() - Method in class loci.formats.FilePatternBlock

getElementSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getElementSize(String) - Method in interface loci.formats.services.JHDFService

Retrieves the Element Size of a dataset in Byte.

getElementSize(String) - Method in class loci.formats.services.JHDFServiceImpl

getElemFloat(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElemFloat(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

getEllipseAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Ellipse.

getEllipseAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Ellipse.

getEllipseFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Ellipse.

getEllipseFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Ellipse.

getEllipseFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Ellipse.

getEllipseFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Ellipse.

getEllipseFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseID(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Ellipse.

getEllipseID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Ellipse.

getEllipseLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Ellipse.

getEllipseLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseRadiusX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseRadiusX(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseRadiusX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RadiusX property of Ellipse.

getEllipseRadiusX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseRadiusY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseRadiusY(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseRadiusY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RadiusY property of Ellipse.

getEllipseRadiusY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Ellipse.

getEllipseStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Ellipse.

getEllipseStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Ellipse.

getEllipseStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseText(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Ellipse.

getEllipseText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Ellipse.

getEllipseTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Ellipse.

getEllipseTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Ellipse.

getEllipseTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Ellipse.

getEllipseTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Ellipse.

getEllipseVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseX(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Ellipse.

getEllipseX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseY(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Ellipse.

getEllipseY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEmail() - Method in class ome.xml.model.Experimenter

getEmission() - Method in class loci.formats.in.SVSReader

getEmissionWavelength(Double) - Static method in class loci.formats.FormatTools

getEmissionWavelength(int) - Method in class loci.tests.testng.Configuration

getEmissionWavelength() - Method in class ome.xml.model.Channel

getEmissionWavelengths() - Method in class loci.formats.in.ND2Handler

getEmissionWavelengthUnitXsdDefault() - Static method in class ome.xml.model.Channel

getEmpty() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Get the empty field for the SheetProperties record.

getEncoderVersion() - Method in class ome.jxr.parser.FileParser

getEncoding() - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.

As of 3-Jan-06 POI now automatically handles Unicode without forcing the encoding.

getEncodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets encodingRate.

getEncodingRate() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets encodingRate

getEndRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the physical row number of the end row in a block

getEndTime() - Method in class ome.xml.model.PlateAcquisition

getEntity() - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.BinningEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler

getEntity() - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler

Retrieve the entity corresponding to this handler.

getEntity() - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MediumEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.PulseEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.FloatIM3Record

Return all entries as an array

getEntries() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

get an iterator of the Entry instances contained directly in this instance (in other words, children only; no grandchildren etc.)

getEntries() - Method in class loci.poi.poifs.filesystem.DirectoryNode

get an iterator of the Entry instances contained directly in this instance (in other words, children only; no grandchildren etc.)

getEntry(IRandomAccess, int) - Method in class loci.formats.in.IM3Reader.BooleanIM3Record

Get the boolean value at the given index

getEntry(IRandomAccess, int) - Method in class loci.formats.in.IM3Reader.FloatIM3Record

Get the floating-point value at the given index

getEntry(IRandomAccess, int) - Method in class loci.formats.in.IM3Reader.IntIM3Record

Get the integer value at the given index

getEntry(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

get a specified Entry by name

getEntry(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode

get a specified Entry by name

getEntryCount() - Method in class loci.common.ZipHandle

Returns the number of entries.

getEntryCount() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

find out how many Entry instances are contained directly within this DirectoryEntry

getEntryCount() - Method in class loci.poi.poifs.filesystem.DirectoryNode

find out how many Entry instances are contained directly within this DirectoryEntry

getEntryName() - Method in class loci.common.ZipHandle

Get the name of the backing Zip entry.

getEntryOffsets() - Method in class ome.jxr.ifd.IFDContainer

Returns the list of offsets counted from the beginning of a data stream.

getEntryType() - Method in enum ome.jxr.ifd.IFDEntry

getEnumeratedAttribute(Node, String, String[], int, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getEnumeratedAttribute(Node, String, String[]) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getEnumeratedColorSpace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the enumerated color space.

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.BinningEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler

getEnumeration(String) - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler

Attempt to find an enumeration from a list of enumeration values.

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MediumEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PulseEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getEnumeration(ElectricPotential) - Method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getEnumeration(Frequency) - Method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getEnumeration(Length) - Method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getEnumeration(Power) - Method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getEnumeration(Pressure) - Method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getEnumeration(Temperature) - Method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getEnumeration(Time) - Method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getEofLoc() - Method in class loci.poi.hssf.model.Sheet

getEPH() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets EPH.

getEPH() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets EPH

getEqualsToIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord

getEquation() - Method in class mdbtools.dbengine.sql.Join

getEquipmentMake() - Method in class ome.jxr.ifd.IFDMetadata

getEquipmentModel() - Method in class ome.jxr.ifd.IFDMetadata

getErrorCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as an error code.

getErrorCount() - Method in class loci.common.xml.ValidationErrorHandler

getErrorMessage() - Method in class loci.formats.FilePattern

Gets the file pattern error message, if any.

getErrorValue() - Method in class loci.poi.hssf.record.BoolErrRecord

get the error value for the cell

getEscherGraphics() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getEscherGraphics() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getEscherProperties() - Method in class loci.poi.ddf.EscherOptRecord

The list of properties stored by this record.

getEscherProperty(int) - Method in class loci.poi.ddf.EscherOptRecord

The list of properties stored by this record.

getEscherRecord(int) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getEscherRecordSize(List) - Method in class loci.poi.hssf.record.EscherAggregate

How many bytes do the raw escher records contain.

getEscherTextbox() - Method in class loci.poi.hssf.model.TextboxShape

getExcelDate(Date) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a Date, converts it into a double representing its internal Excel representation, which is the number of days since 1/1/1900.

getExcitation() - Method in class loci.formats.in.SVSReader

getExcitationWavelength(Double) - Static method in class loci.formats.FormatTools

getExcitationWavelength(int) - Method in class loci.tests.testng.Configuration

getExcitationWavelength() - Method in class ome.xml.model.Channel

getExcitationWavelengths() - Method in class loci.formats.in.ND2Handler

getExcitationWavelengthUnitXsdDefault() - Static method in class ome.xml.model.Channel

getExFormatAt(int) - Method in class loci.poi.hssf.model.Workbook

gets the ExtendedFormatRecord at the given 0-based index

getExifIFDs() - Method in class loci.formats.tiff.TiffParser

Returns EXIF IFDs.

getExifTagName(int) - Static method in class loci.formats.in.BaseTiffReader

getExperiment() - Method in class ome.xml.model.MicrobeamManipulation

getExperiment(int) - Method in class ome.xml.model.OME

getExperimentCount() - Method in class ome.xml.meta.AggregateMetadata

getExperimentCount() - Method in class ome.xml.meta.DummyMetadata

getExperimentCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Experiment elements.

getExperimentCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimentDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimentDescription(int) - Method in class ome.xml.meta.DummyMetadata

getExperimentDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Experiment.

getExperimentDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenter(int) - Method in class ome.xml.model.OME

getExperimenterAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Experimenter.

getExperimenterAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Experimenter.

getExperimenterAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterCount() - Method in class ome.xml.meta.AggregateMetadata

getExperimenterCount() - Method in class ome.xml.meta.DummyMetadata

getExperimenterCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Experimenter elements.

getExperimenterCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterEmail(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterEmail(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterEmail(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Email property of Experimenter.

getExperimenterEmail(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterFirstName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterFirstName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterFirstName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FirstName property of Experimenter.

getExperimenterFirstName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroup(int) - Method in class ome.xml.model.OME

getExperimenterGroupAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of ExperimenterGroup.

getExperimenterGroupAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in ExperimenterGroup.

getExperimenterGroupAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupCount() - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupCount() - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ExperimenterGroup elements.

getExperimenterGroupCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupDescription(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of ExperimenterGroup.

getExperimenterGroupDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupExperimenterRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupExperimenterRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupExperimenterRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of ExperimenterGroup.

getExperimenterGroupExperimenterRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupExperimenterRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupExperimenterRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupExperimenterRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ExperimenterRef elements in ExperimenterGroup.

getExperimenterGroupExperimenterRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupID(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupID(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of ExperimenterGroup.

getExperimenterGroupID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupLeader(int, int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupLeader(int, int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupLeader(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Leader property of ExperimenterGroup.

getExperimenterGroupLeader(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of ExperimenterGroup.

getExperimenterGroupName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterID(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterID(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Experimenter.

getExperimenterID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterInstitution(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterInstitution(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterInstitution(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Institution property of Experimenter.

getExperimenterInstitution(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterLastName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterLastName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterLastName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LastName property of Experimenter.

getExperimenterLastName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterMiddleName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterMiddleName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterMiddleName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MiddleName property of Experimenter.

getExperimenterMiddleName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterName() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getExperimenterUserName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterUserName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterUserName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the UserName property of Experimenter.

getExperimenterUserName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimentExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimentExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata

getExperimentExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of Experiment.

getExperimentExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimentID(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimentID(int) - Method in class ome.xml.meta.DummyMetadata

getExperimentID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Experiment.

getExperimentID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimentType(String) - Method in class loci.formats.FormatReader

Retrieves an ExperimentType enumeration value for the given String.

getExperimentType(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimentType(int) - Method in class ome.xml.meta.DummyMetadata

getExperimentType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Experiment.

getExperimentType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExposures() - Method in class loci.formats.in.MetamorphHandler

getExposureTime(int, int) - Method in class loci.formats.in.SlideBook6Reader

getExposureTime() - Method in class loci.formats.in.SVSReader

getExposureTime(int) - Method in class loci.tests.testng.Configuration

getExposureTime() - Method in class ome.xml.model.Plane

getExposureTimes() - Method in class loci.formats.in.ND2Handler

getExposureTimeUnitXsdDefault() - Static method in class ome.xml.model.Plane

getExpressionLength() - Method in class loci.poi.hssf.record.FormulaRecord

get the length (in number of tokens) of the expression

getExpressionLength() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getExtendedRst() - Method in class loci.poi.hssf.record.UnicodeString

getExtension() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's first valid extension.

getExtensionFunctions() - Method in class loci.plugins.macro.MacroFunctions

getExtensions() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's valid extensions.

getExternal() - Method in class ome.xml.model.BinaryFile

getExternalConfigFile(String, ConfigurationTree) - Static method in class loci.tests.testng.TestTools

Retrieve an external configuration file given a root directory and test configuration

getExternalDescription() - Method in class ome.xml.model.Well

getExternalIdentifier() - Method in class ome.xml.model.Plate

getExternalIdentifier() - Method in class ome.xml.model.Well

getExternalSeries() - Method in class loci.formats.FileStitcher

getExternalSeries(int) - Method in class loci.formats.FileStitcher

getExternalSymlinkConfigFile(String, ConfigurationTree) - Static method in class loci.tests.testng.TestTools

Retrieve an external symlinkedconfiguration file given a root directory and a test configuration

getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getExternSheetNumber() - Method in class loci.poi.hssf.record.NameRecord

gets the extern sheet number

getExternsheetPos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the externsheetPos.

getExtraLayers(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the number of extra layers to add after the optimization point 'n', but before optimization point 'n+1'.

getExtraLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box extra length.

getExtraSeries(String) - Method in class loci.formats.in.ZeissLSMReader

getf(int) - Method in class loci.plugins.util.RecordedImageProcessor

getf(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

getFailureClass() - Method in exception loci.common.services.DependencyException

Returns the class that was used during a failed instantiation.

getFamily() - Method in class loci.poi.hssf.record.FontRecord

get the font family (TODO)

getField(String) - Method in class loci.formats.in.CellomicsReader

getField(String) - Method in class loci.formats.in.FlexReader

getField(int) - Method in class loci.formats.in.FluoviewReader

getField(String) - Method in class loci.formats.in.MetamorphTiffReader

getFieldFromSeries(int) - Method in class loci.formats.in.InCellReader

getFieldIndex() - Method in class loci.formats.in.ND2Handler

getFieldIndex() - Method in class ome.xml.model.Plate

getFieldName(Class<?>, int) - Static method in class loci.common.DebugTools

This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.

getFieldName(int) - Static method in class loci.formats.tiff.IFD

This method uses reflection to scan the values of this class's static fields, returning the first matching field's name.

getFilamentAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Filament.

getFilamentAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentID(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Filament.

getFilamentID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Filament.

getFilamentLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Filament.

getFilamentManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Filament.

getFilamentModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentPower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentPower(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentPower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of Filament.

getFilamentPower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Filament.

getFilamentSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentType(String) - Method in class loci.formats.FormatReader

Retrieves an FilamentType enumeration value for the given String.

getFilamentType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentType(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Filament.

getFilamentType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFile(int, int) - Method in class loci.formats.in.CellWorxReader

Retrieve the .pnl file corresponding to the given series.

getFile(String) - Method in class loci.formats.in.FV1000Reader

getFile(int) - Method in class loci.formats.in.MicromanagerReader.Position

getFile(String, int, int, int, int, int) - Method in class loci.formats.in.MicromanagerReader.Position

getFile(int) - Method in class loci.formats.in.PerkinElmerReader

getFile(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the File with the given channel.

getFile(int, int, int) - Method in class loci.formats.in.PrairieMetadata

Gets the Frame at the given (cycle, index, channel).

getFile(int, int) - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the Frame at the given (cycle, index, channel).

getFile(Integer, Location) - Method in class loci.formats.in.VolocityReader

getFile() - Method in interface loci.formats.services.JHDFService

Retrieves the current initialized file path.

getFile() - Method in class loci.formats.services.JHDFServiceImpl

getFile() - Method in interface loci.formats.services.NetCDFService

Retrieves the current initialized file path.

getFile() - Method in class loci.formats.services.NetCDFServiceImpl

getFile() - Method in class loci.tests.testng.Configuration

getFileAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getFileAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a FileAnnotation.

getFileAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of FileAnnotation.

getFileAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of FileAnnotation.

getFileAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of FileAnnotation elements.

getFileAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of FileAnnotation.

getFileAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of FileAnnotation.

getFileAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of FileAnnotation.

getFileAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileChannel() - Method in class loci.common.NIOFileHandle

Gets the FileChannel from this FileHandle.

getFileHandle(String) - Method in class loci.formats.in.FlexReader

getFileIdClusters() - Method in class loci.poi.ddf.EscherDggRecord

getFileIndex(int) - Method in class loci.formats.in.PerkinElmerReader

getFilename(int, int, IFormatReader, String) - Static method in class loci.formats.FormatTools

getFilename(int, int) - Method in class loci.formats.in.BDReader

getFilename() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the filename associated with this File.

getFileName() - Method in class ome.xml.model.BinaryFile

getFileName() - Method in class ome.xml.model.UUID

getFilenames(String, IFormatReader) - Static method in class loci.formats.FormatTools

getFilePattern() - Method in class loci.formats.AxisGuesser

Gets the file pattern.

getFilePattern() - Method in class loci.formats.FileStitcher.ExternalSeries

getFilePattern() - Method in class loci.formats.FileStitcher

Gets the file pattern object used to build the list of files.

getFilePointer() - Method in class loci.common.ByteArrayHandle

getFilePointer() - Method in class loci.common.FileHandle

getFilePointer() - Method in interface loci.common.IRandomAccess

Returns the current offset in this stream.

getFilePointer() - Method in class loci.common.NIOFileHandle

getFilePointer() - Method in class loci.common.NIOInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class loci.common.RandomAccessInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class loci.common.RandomAccessOutputStream

Returns the current offset within the stream.

getFilePointer() - Method in class loci.common.StreamHandle

getFiles() - Method in class loci.formats.FilePattern

Gets a listing of all files matching the given file pattern.

getFiles() - Method in class loci.formats.FileStitcher.ExternalSeries

getFiles(String, List, ConfigurationTree, String) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFiles(String, List, ConfigurationTree, String, String[]) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFiles(String, List, ConfigurationTree, String, String[], String) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFileSharing() - Method in class loci.poi.hssf.model.Workbook

getFileSize(String) - Method in interface loci.formats.services.POIService

Retrieve the total number of bytes in the given file.

getFileSize(String) - Method in class loci.formats.services.POIServiceImpl

getFileSize() - Method in class ome.jxr.parser.FileParser

getFileStitcher() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getFileTimestamp() - Static method in class loci.common.DateTools

Returns a timestamp for the current timezone in a format suitable for a filename in a locale-independent format ("YYYY-MM-DD_HH-MM-SS")

getFileVersion(RandomAccessInputStream) - Method in class loci.formats.in.OBFReader

getFillBackground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the background palette color index

getFillBackgroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the background fill color

getFillByte() - Static method in class loci.poi.poifs.storage.DocumentBlock

getFillColor() - Method in class loci.poi.hssf.usermodel.HSSFShape

The color used to fill this shape.

getFillColor() - Method in class ome.xml.model.Shape

getFillForeground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the foreground palette color index

getFillForegroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the foreground fill color

getFillPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the fill palette options bitmask (see indivdual bit getters that reference this method)

getFillPattern() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the fill pattern (??) - set to 1 to fill with foreground color

getFillRule(String) - Method in class loci.formats.FormatReader

Retrieves an FillRule enumeration value for the given String.

getFillRule() - Method in class ome.xml.model.Shape

getFilter() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets filters.

getFilter() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Filter should always be 0

getFilter(int) - Method in class ome.xml.model.Instrument

getFilterAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Filter.

getFilterAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Filter.

getFilterAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterCount(int) - Method in class ome.xml.meta.AggregateMetadata

getFilterCount(int) - Method in class ome.xml.meta.DummyMetadata

getFilterCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Filter elements.

getFilterCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterFilterWheel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterFilterWheel(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterFilterWheel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FilterWheel property of Filter.

getFilterFilterWheel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterID(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Filter.

getFilterID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Filter.

getFilterLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Filter.

getFilterManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Filter.

getFilterModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets filters

getFilters() - Method in class loci.formats.gui.ComboFileFilter

Gets the list of file filters forming this filter combination.

getFilterSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Filter.

getFilterSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSet(int) - Method in class ome.xml.model.Instrument

getFilterSetCount(int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetCount(int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of FilterSet elements.

getFilterSetCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetDichroicRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetDichroicRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetDichroicRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DichroicRef property of FilterSet.

getFilterSetDichroicRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetEmissionFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the EmissionFilterRef property of FilterSet.

getFilterSetEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetEmissionFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of EmissionFilterRef elements in FilterSet.

getFilterSetEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetExcitationFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExcitationFilterRef property of FilterSet.

getFilterSetExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetExcitationFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ExcitationFilterRef elements in FilterSet.

getFilterSetExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetID(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of FilterSet.

getFilterSetID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of FilterSet.

getFilterSetLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of FilterSet.

getFilterSetManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of FilterSet.

getFilterSetModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of FilterSet.

getFilterSetSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterType(int, AnWTFilterSpec) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec

Get the filter type common to all component of a given tile.

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the type of filter used according to the FilterTypes interface.

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the type of filter used according to the FilterTypes interface(W9x7).

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the type of filter used according to the FilterTypes interface (W5x3).

getFilterType(String) - Method in class loci.formats.FormatReader

Retrieves an FilterType enumeration value for the given String.

getFilterType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterType(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Filter.

getFilterType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterWheel() - Method in class ome.xml.model.Filter

getFinalCRC() - Method in class loci.common.CRC

getFirst() - Method in class loci.formats.FilePattern

getFirst() - Method in class loci.formats.FilePatternBlock

getFirstC() - Method in class ome.xml.model.TiffData

getFirstCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getFirstCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the number of the first cell contained in this row.

getFirstChannel(String) - Method in class loci.formats.in.SlidebookTiffReader

getFirstChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getFirstChild(Element, String) - Method in class loci.formats.in.PrairieMetadata

Gets the first child element with the given name.

getFirstCodeStreamLength() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method returns the length of the first contiguous codestreams in the file

getFirstCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method returns the position of the first contiguous codestreams in the file

getFirstCol() - Method in class loci.poi.hssf.record.DimensionsRecord

get the first column number for the sheet

getFirstCol() - Method in class loci.poi.hssf.record.RowRecord

get the logical col number for the first cell this row (0 based index)

getFirstColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the first column this record defines formatting info for

getFirstColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getFirstColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg

getFirstColumn() - Method in class loci.poi.hssf.record.MulBlankRecord

starting column (first cell this holds in the row)

getFirstColumn() - Method in class loci.poi.hssf.record.MulRKRecord

starting column (first cell this holds in the row)

getFirstColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getFirstColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg

getFirstComment(int) - Method in class loci.formats.in.MetamorphReader

Returns the TIFF comment from the first IFD of the first STK file in the given series.

getFirstDigitPosition(String) - Method in class loci.poi.hssf.util.RangeAddress

getFirstFile() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the first File of the Sequence.

getFirstFrame() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the first Frame of the Sequence.

getFirstIFD() - Method in class loci.formats.tiff.TiffParser

Gets the first IFD within the TIFF file, or null if the input source is not a valid TIFF file.

getFirstIFDEntry(int) - Method in class loci.formats.tiff.TiffParser

Retrieve a given entry from the first IFD in the stream.

getFirstName() - Method in class ome.xml.model.Experimenter

getFirstNode(Element, String) - Method in class loci.formats.in.ZeissCZIReader

getFirstNodeValue(Element, String) - Method in class loci.formats.in.ZeissCZIReader

getFirstOffset() - Method in class loci.formats.tiff.TiffParser

Gets offset to the first IFD, or -1 if stream is not TIFF.

getFirstRow() - Method in class loci.poi.hssf.record.DimensionsRecord

get the first row number for the sheet

getFirstRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getFirstRow() - Method in class loci.poi.hssf.record.formula.AreaPtg

getFirstRow() - Method in class loci.poi.hssf.record.IndexRecord

getFirstRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getFirstRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getFirstRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getFirstRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the first row on the sheet

getFirstSection() - Method in class loci.poi.hpsf.PropertySet

Gets the PropertySet's first section.

getFirstSection() - Method in class loci.poi.hpsf.SpecialPropertySet

getFirstSequence() - Method in class loci.formats.in.PrairieMetadata

Gets the first Sequence.

getFirstT() - Method in class ome.xml.model.TiffData

getFirstTimeInfo() - Method in class loci.plugins.in.ImporterOptions

getFirstZ() - Method in class ome.xml.model.TiffData

getFitHeight() - Method in class loci.poi.hssf.record.PrintSetupRecord

getFitHeight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of pages high to fit the sheet in.

getFitToPage() - Method in class loci.poi.hssf.record.WSBoolRecord

fit to page option is on

getFitToPage() - Method in class loci.poi.hssf.usermodel.HSSFSheet

fit to page option is on

getFitWidth() - Method in class loci.poi.hssf.record.PrintSetupRecord

getFitWidth() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of pages wide to fit sheet in.

getFixedHeader() - Method in class loci.formats.services.JPEGTurboServiceImpl

getFixedPoint(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the position of the fixed point in the specified component (i.e.

getFixedPoint(int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns the position of the fixed point in the specified component (i.e.

getFixedPoint(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.Tiler

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the position of the fixed point in the output data for the specified component.

getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the position of the fixed point in the specified component.

getFlag() - Method in class loci.poi.ddf.EscherClientAnchorRecord

0 = Move and size with Cells, 2 = Move but don't size with cells, 3 = Don't move or size with cells.

getFlag() - Method in class loci.poi.hssf.record.SupBookRecord

getFlag() - Method in class loci.poi.hssf.record.UseSelFSRecord

returns whether we use natural language formulas or not

getFlags() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the Flags data element.

getFlags() - Method in class loci.poi.ddf.EscherSpRecord

The flags that apply to this shape.

getFlags() - Method in class loci.poi.hssf.record.NoteRecord

Options flags.

getFlags() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Get the flags field for the SheetProperties record.

getFlexFiles() - Method in class loci.formats.in.FlexReader.MeaHandler

getFloatArray() - Method in class loci.plugins.util.RecordedImageProcessor

getFloatAttribute(Node, String, float, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getFloatAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getFloats(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloats(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloats(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloatValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock

getFluor() - Method in class ome.xml.model.Channel

getFlushedPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getFnGroup() - Method in class loci.poi.hssf.record.NameRecord

getFont() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getFontAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the font at the given index number

getFontAtIndex(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Returns the font in use at a particular index.

getFontDetails(Font) - Static method in class loci.poi.hssf.usermodel.StaticFontMetrics

Retrieves the fake font details for a given font.

getFontFamily(String) - Method in class loci.formats.FormatReader

Retrieves an FontFamily enumeration value for the given String.

getFontFamily() - Method in class ome.xml.model.Shape

getFontHeight() - Method in class loci.poi.hssf.record.FontRecord

gets the height of the font in 1/20th point units

getFontHeight() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the font height in unit's of 1/20th of a point.

getFontHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the font height

getFontIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the index to the FONT record (which font to use 0 based)

getFontIndex() - Method in class loci.poi.hssf.record.FontIndexRecord

Get the font index field for the FontIndex record.

getFontIndex() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

getFontIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

getFontMetrics() - Method in class loci.plugins.util.RecordedImageProcessor

getFontMetrics() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics

getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getFontName() - Method in class loci.poi.hssf.record.FontRecord

get the name of the font

getFontName() - Method in class loci.poi.hssf.usermodel.FontDetails

getFontName() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the name for the font (i.e.

getFontNameLength() - Method in class loci.poi.hssf.record.FontRecord

get the length of the fontname string

getFontOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Gets the font used in a particular formatting run.

getFontpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getFontRecordAt(int) - Method in class loci.poi.hssf.model.Workbook

gets the font record at the given index in the font table.

getFontRenderContext() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFontRenderContext() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getFontSize(Integer) - Static method in class loci.formats.FormatTools

getFontSize() - Method in class ome.xml.model.Shape

getFontSizeUnitXsdDefault() - Static method in class ome.xml.model.Shape

getFontStyle(String) - Method in class loci.formats.FormatReader

Retrieves an FontStyle enumeration value for the given String.

getFontStyle() - Method in class ome.xml.model.Shape

getFooter(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable

getFooter() - Method in class loci.poi.hssf.model.Sheet

Returns the FooterRecord.

getFooter() - Method in class loci.poi.hssf.record.FooterRecord

get the footer string

getFooter() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the user model for the document footer.

getFooterLength() - Method in class loci.poi.hssf.record.FooterRecord

get the length of the footer string

getFooterMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord

getFooterMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the footer margin.

getForceThumbnailsInfo() - Method in class loci.plugins.in.ImporterOptions

getForecolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the forecolor index field for the AreaFormat record.

getForegroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the foreground color field for the AreaFormat record.

getFormat() - Method in class loci.formats.FormatHandler

getFormat() - Method in interface loci.formats.IFormatHandler

Gets the name of this file format.

getFormat(String) - Method in class loci.formats.ImageReader

Gets a string describing the file format for the given file.

getFormat() - Method in class loci.formats.ImageReader

getFormat(String) - Method in class loci.formats.ImageWriter

Gets a string describing the file format for the given file.

getFormat() - Method in class loci.formats.ImageWriter

getFormat() - Method in class loci.formats.ReaderWrapper

getFormat() - Method in class loci.formats.WriterWrapper

getFormat(String, String[]) - Method in class loci.plugins.macro.LociFunctions

getFormat() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "format" field.

getFormat() - Method in class loci.poi.hpsf.SpecialPropertySet

getFormat(String, boolean) - Method in class loci.poi.hssf.model.Workbook

Returns a format index that matches the passed in format.

getFormat() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the format field for the LineFormat record.

getFormat(String) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format index that matches the given format string.

getFormat(short) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format string that matches the given format index

getFormatFlags() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the format flags field for the AreaFormat record.

getFormatFlags() - Method in class loci.poi.hssf.record.AreaRecord

Get the format flags field for the Area record.

getFormatFlags() - Method in class loci.poi.hssf.record.BarRecord

Get the format flags field for the Bar record.

getFormatFlags() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the format flags field for the DataFormat record.

getFormatFlags() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Get the format flags field for the SeriesLabels record.

getFormatID() - Method in class loci.poi.hpsf.Section

Returns the format ID.

getFormatIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the index to the Format record (which FORMAT to use 0-based)

getFormatIndex() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Get the format index field for the NumberFormatIndex record.

getFormatLine(PrintFormatTable.PrintStyles, String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getFormatName() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getFormatRun(int) - Method in class loci.poi.hssf.record.UnicodeString

getFormatRunCount() - Method in class loci.poi.hssf.record.UnicodeString

getFormats() - Method in class loci.poi.hssf.model.Workbook

Returns the list of FormatRecords in the workbook.

getFormatString() - Method in class loci.poi.hssf.record.FormatRecord

get the format string

getFormatted() - Method in class loci.poi.hssf.record.RowRecord

get whether the row has been formatted (even if its got all blank cells)

getFormattingRunLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the formatting run length field for the TextObjectBase record.

getFormulaOfLink() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the formula of link field for the LinkedData record.

getFormulaRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getFormulaTokens() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

getFrame(int, int) - Method in class loci.formats.in.PrairieMetadata

Gets the Frame at the given (cycle and index).

getFrame() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the <Frame> containing this <File>.

getFrame(int) - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the Frame with the given index.

getFramesPerSecond() - Method in class loci.formats.FormatWriter

getFramesPerSecond() - Method in interface loci.formats.IFormatWriter

Gets the frames per second to use when writing.

getFramesPerSecond() - Method in class loci.formats.ImageWriter

getFramesPerSecond() - Method in class loci.formats.WriterWrapper

getFreezePanes() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should freeze panes

getFreezePanesNoSplit() - Method in class loci.poi.hssf.record.WindowTwoRecord

freeze unsplit panes or not

getFrequencyMultiplication() - Method in class ome.xml.model.Laser

getFromCell() - Method in class loci.poi.hssf.util.RangeAddress

getFromCompressedUnicode(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Read 8 bit data (in ISO-8859-1 codepage) into a (unicode) Java String and return.

getFromParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getFromUnicodeBE(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in big endian format (most important byte first), return a Java String representation of it.

getFromUnicodeBE(byte[]) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in big endian format (most important byte first), return a Java String representation of it.

getFromUnicodeLE(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in Little Endian format (most important byte last), return a Java String representation of it.

getFromUnicodeLE(byte[]) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in little endian format (most important byte last), return a Java String representation of it.

getFullPrecision() - Method in class loci.poi.hssf.record.PrecisionRecord

get whether to use full precision or just skew all you figures all to hell.

getFunction(String, byte) - Method in class loci.poi.hssf.model.FormulaParser

Generates the variable function ptg for the formula.

getFunction() - Method in class mdbtools.dbengine.sql.FunctionDef

getFunctionIndex() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getG2D() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getGain() - Method in class loci.formats.in.MetamorphHandler

getGain(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the cth gain for this Frame.

getGain() - Method in class ome.xml.model.Detector

getGain() - Method in class ome.xml.model.DetectorSettings

getGains() - Method in class loci.formats.in.ND2Handler

getGenericExcitationSourceAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of GenericExcitationSource.

getGenericExcitationSourceAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceID(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of GenericExcitationSource.

getGenericExcitationSourceID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of GenericExcitationSource.

getGenericExcitationSourceLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of GenericExcitationSource.

getGenericExcitationSourceManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceMap(int, int) - Method in class ome.xml.meta.AggregateMetadata

Gets the Map value associated with this generic light source

getGenericExcitationSourceMap(int, int) - Method in class ome.xml.meta.DummyMetadata

Gets the Map value associated with this generic light source

getGenericExcitationSourceMap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MapAnnotation values from a GenericExcitationSource.

getGenericExcitationSourceMap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Gets the Map value associated with this generic light source

getGenericExcitationSourceModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of GenericExcitationSource.

getGenericExcitationSourceModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourcePower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourcePower(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourcePower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of GenericExcitationSource.

getGenericExcitationSourcePower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of GenericExcitationSource.

getGenericExcitationSourceSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGifPaletteSize(int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

According do GIF specification size of clor table (palette here) must be in range from 2 to 256 and must be power of 2.

getGlobalCRC() - Method in class loci.common.CRC

getGlobalMeta(String) - Method in class loci.formats.FormatReader

Gets a value from the global metadata table.

getGlobalMetadata() - Method in class loci.formats.FormatReader

getGlobalMetadata() - Method in interface loci.formats.IFormatReader

Obtains the hashtable containing the metadata field/value pairs from the current file.

getGlobalMetadata() - Method in class loci.formats.ImageReader

getGlobalMetadata() - Method in class loci.formats.in.FilePatternReader

getGlobalMetadata() - Method in class loci.formats.in.LeicaHandler

getGlobalMetadata() - Method in class loci.formats.ReaderWrapper

getGnumericPart(byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

getGrandchildren(Element, String) - Method in class loci.formats.in.ZeissCZIReader

getGrandchildren(Element, String, String) - Method in class loci.formats.in.ZeissCZIReader

getGrandParent(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

get a node's grandparent.

getGreen(int) - Method in class loci.formats.gui.Index16ColorModel

getGreen(int) - Method in class loci.formats.gui.SignedColorModel

getGreen(Object) - Method in class loci.formats.gui.SignedColorModel

getGreen(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getGreen(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getGreen() - Method in class loci.poi.ddf.EscherRGBProperty

getGreen() - Method in class ome.xml.model.primitives.Color

Returns the green component of this color.

getGreenOffset(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

For the given pixel format, returns the number of bytes that the green component is offset from the start of the pixel.

getGreens() - Method in class loci.formats.gui.Index16ColorModel

Return the array of green color components.

getGridset() - Method in class loci.poi.hssf.record.GridsetRecord

get whether the gridlines are shown during printing.

getGridsetRecord() - Method in class loci.poi.hssf.model.Sheet

Gets the gridset record for this sheet.

getGroup(String) - Method in class loci.formats.services.NetCDFServiceImpl

Retrieves a group based on its fully qualified path.

getGroupBy(int) - Method in class mdbtools.dbengine.sql.Select

getGroupByCount() - Method in class mdbtools.dbengine.sql.Select

getGroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions

getGuardBits() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets guardBits

getHandle(String) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from the given file.

getHandle(String, boolean) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHandle(String, boolean, boolean) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHandle(String, boolean, boolean, int) - Static method in class loci.common.Location

getHandle(String) - Static method in class loci.common.ZipHandle

getHandles() - Method in class loci.tests.testng.FileHandleTest

getHashSHA1() - Method in class ome.xml.model.Plane

getHCenter() - Method in class loci.poi.hssf.record.HCenterRecord

get whether or not to horizonatally center this sheet.

getHeader() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getHeader(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable

getHeader() - Method in class loci.poi.hssf.model.Sheet

Returns the HeaderRecord.

getHeader() - Method in class loci.poi.hssf.record.HeaderRecord

get the header string

getHeader() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the user model for the document header.

getHeaderColor() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the palette index for the header color

getHeaderInfo(int, String) - Method in class loci.formats.in.DicomReader

getHeaderLength() - Method in class loci.poi.hssf.record.HeaderRecord

get the length of the header string

getHeaderMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord

getHeaderMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the header margin.

getHeaderPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the pixel type as specified in the header.

getHeaders() - Method in class loci.common.IniList

Gets the table names (headers) in the list.

getHeaderSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of channels the image has as specified in the header.

getHeaderSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the width of the image as specified in the header.

getHeaderSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the height of the image as specified in the header.

getHeadingPair() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the heading pair (or null) when this method is implemented.

getHeight() - Method in class com.luratech.lwf.lwfDecoder

getHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the height of the image.

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the height of the image.

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getHeight() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the number of leafs along the vertical direction.

getHeight() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Returns the number of leafs along the vertical direction.

getHeight() - Method in class loci.formats.codec.JPEGTileDecoder

getHeight() - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

getHeight(int) - Method in class loci.formats.in.LegacyND2Reader

getHeight() - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.getHeight()

getHeight() - Method in class loci.formats.services.LuraWaveServiceImpl

getHeight(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack

getHeight() - Method in class loci.plugins.util.BFVirtualStack

getHeight() - Method in class loci.plugins.util.RecordedImageProcessor

getHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the height of the metafile in EMU's (English Metric Units).

getHeight() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the height field for the AxisParent record.

getHeight() - Method in class loci.poi.hssf.record.ChartFormatRecord

getHeight() - Method in class loci.poi.hssf.record.ChartRecord

Get the height field for the Chart record.

getHeight() - Method in class loci.poi.hssf.record.RowRecord

get the height of the row

getHeight() - Method in class loci.poi.hssf.record.TextRecord

Get the height field for the Text record.

getHeight() - Method in class loci.poi.hssf.record.WindowOneRecord

get the height of the window

getHeight() - Method in class loci.poi.hssf.usermodel.FontDetails

getHeight() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the row's height or ff (-1) for undefined/default-height in twips (1/20th of a point)

getHeight() - Method in class loci.poi.hssf.util.RangeAddress

getHeight() - Method in class ome.xml.model.Mask

getHeight() - Method in class ome.xml.model.Rectangle

getHeight() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the height of the JPEG image associated with this decompressor instance.

getHeightBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the height basis field for the FontBasis record.

getHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the row's height or ff (-1) for undefined/default-height in points (20*getHeight())

getHeightResoulution() - Method in class ome.jxr.ifd.IFDMetadata

getHelpTopicLength() - Method in class loci.poi.hssf.record.NameRecord

gets the help topic length

getHelpTopicText() - Method in class loci.poi.hssf.record.NameRecord

get the help topic text

getHexString() - Method in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AQUA

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLACK

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BROWN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORAL

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

getHexString() - Method in class loci.poi.hssf.util.HSSFColor

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GOLD

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIME

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.MAROON

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PINK

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PLUM

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.RED

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROSE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TAN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TEAL

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.WHITE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW

getHFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the horizontal analysis filters to be used in component 'n' and tile 't'.

getHFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the horizontal analysis filters to be used in component 'n' and tile 't'.

getHH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the HH child subband of this subband.

getHH() - Method in class jj2000.j2k.wavelet.Subband

Returns the HH child subband of this subband.

getHH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the HH child subband of this subband.

getHidden() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get whether or not these cells are hidden

getHidden() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether the window is hidden or not

getHidden() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the cell's using this style are to be hidden

getHiddenCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the hidden count or 0 if the DocumentSummaryInformation does not contain a hidden count.

getHideObj() - Method in class loci.poi.hssf.record.HideObjRecord

get hide object options

getHistogram() - Method in class loci.plugins.util.RecordedImageProcessor

getHistogramMax() - Method in class loci.plugins.util.RecordedImageProcessor

getHistogramMin() - Method in class loci.plugins.util.RecordedImageProcessor

getHistogramSize() - Method in class loci.plugins.util.RecordedImageProcessor

getHistoryBitMask() - Method in class loci.poi.hssf.record.BOFRecord

get the history bit mask (not very useful)

getHL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the HL (horizontal high-pass) child subband of this subband.

getHL() - Method in class jj2000.j2k.wavelet.Subband

Returns the HL (horizontal high-pass) child subband of this subband.

getHL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the HL (horizontal high-pass) child subband of this subband.

getHorAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the horizontal analysis wavelet filters used in each level, for the specified tile-component.

getHorAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the horizontal analysis wavelet filters used in each level, for the specified component and tile.

getHorizontalAlignment() - Method in class loci.poi.hssf.record.TextRecord

Get the horizontal alignment field for the Text record.

getHorizontalHold() - Method in class loci.poi.hssf.record.WindowOneRecord

get the horizontal position of the window (in 1/20ths of a point)

getHorizontallyCenter() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determine whether printed output for this sheet will be horizontally centered.

getHorizontalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Return the horizontal resolution.

getHorizontalScale() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Get the horizontalScale field for the PlotGrowth record.

getHorizontalSplitPosition() - Method in class loci.poi.hssf.util.PaneInformation

Returns the horizontal position of the split.

getHorizontalSplitTopRow() - Method in class loci.poi.hssf.util.PaneInformation

For a horizontal split returns the top row in the BOTTOM pane.

getHorizontalTextAlignment() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getHorWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

This function returns the horizontal wavelet filter relevant to this subband

getHorWFilter() - Method in class jj2000.j2k.wavelet.Subband

This function returns the horizontal wavelet filter relevant to this subband

getHorWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

This function returns the horizontal wavelet filter relevant to this subband

getHostComputer() - Method in class ome.jxr.ifd.IFDMetadata

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.

getHPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the equivalent high-pass synthesis waveform of a cascade of filters, given the syhthesis waveform of the previous stage.

gethref() - Method in class ome.xml.model.External

getHResolution() - Method in class loci.poi.hssf.record.PrintSetupRecord

getHResolution() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the horizontal resolution.

getHtmlFooter() - Static method in class loci.formats.tools.PrintFormatTable

getHtmlFormatLine(String, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getHtmlHeader() - Static method in class loci.formats.tools.PrintFormatTable

getHumidity() - Method in class ome.xml.model.ImagingEnvironment

getICCProfile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the ICC color profile in this color specification box.

getIconic() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether the window has been iconized or not

getId(String) - Method in class loci.formats.tools.MakeTestOmeTiff

getId() - Method in class loci.plugins.in.ImporterOptions

getId() - Method in class loci.poi.ddf.EscherProperty

getID() - Method in class loci.poi.hpsf.Property

Returns the property's ID.

getId() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the id field for the SeriesText record.

getID() - Method in class loci.tests.testng.FormatReaderTest

getId() - Method in enum ome.jxr.ifd.PixelFormat

getId() - Method in enum ome.jxr.image.BitDepth

getId() - Method in enum ome.jxr.image.ComponentMode

getId() - Method in enum ome.jxr.image.FrequencyBand

getId() - Method in enum ome.jxr.image.InternalColorFormat

getId() - Method in enum ome.jxr.image.OutputColorFormat

getID() - Method in class ome.xml.model.Annotation

getID() - Method in class ome.xml.model.AnnotationRef

getID() - Method in class ome.xml.model.Channel

getID() - Method in class ome.xml.model.ChannelRef

getID() - Method in class ome.xml.model.Dataset

getID() - Method in class ome.xml.model.DatasetRef

getID() - Method in class ome.xml.model.Detector

getID() - Method in class ome.xml.model.DetectorSettings

getID() - Method in class ome.xml.model.Dichroic

getID() - Method in class ome.xml.model.DichroicRef

getID() - Method in class ome.xml.model.Experiment

getID() - Method in class ome.xml.model.Experimenter

getID() - Method in class ome.xml.model.ExperimenterGroup

getID() - Method in class ome.xml.model.ExperimenterGroupRef

getID() - Method in class ome.xml.model.ExperimenterRef

getID() - Method in class ome.xml.model.ExperimentRef

getID() - Method in class ome.xml.model.Filter

getID() - Method in class ome.xml.model.FilterRef

getID() - Method in class ome.xml.model.FilterSet

getID() - Method in class ome.xml.model.FilterSetRef

getID() - Method in class ome.xml.model.Image

getID() - Method in class ome.xml.model.ImageRef

getID() - Method in class ome.xml.model.Instrument

getID() - Method in class ome.xml.model.InstrumentRef

getID() - Method in class ome.xml.model.Leader

getID() - Method in class ome.xml.model.LightSource

getID() - Method in class ome.xml.model.LightSourceSettings

getID() - Method in class ome.xml.model.MicrobeamManipulation

getID() - Method in class ome.xml.model.MicrobeamManipulationRef

getID() - Method in class ome.xml.model.Objective

getID() - Method in class ome.xml.model.ObjectiveSettings

getID() - Method in class ome.xml.model.Pixels

getID() - Method in class ome.xml.model.Plate

getID() - Method in class ome.xml.model.PlateAcquisition

getID() - Method in class ome.xml.model.PlateRef

getID() - Method in class ome.xml.model.Project

getID() - Method in class ome.xml.model.ProjectRef

getID() - Method in class ome.xml.model.Pump

getID() - Method in class ome.xml.model.Reagent

getID() - Method in class ome.xml.model.ReagentRef

getID() - Method in class ome.xml.model.Reference

Retrieves the reference's target object ID.

getID() - Method in class ome.xml.model.ROI

getID() - Method in class ome.xml.model.ROIRef

getID() - Method in class ome.xml.model.Screen

getID() - Method in class ome.xml.model.Shape

getID() - Method in class ome.xml.model.Well

getID() - Method in class ome.xml.model.WellSample

getID() - Method in class ome.xml.model.WellSampleRef

getIdInfo() - Method in class loci.plugins.in.ImporterOptions

getIdle(boolean) - Method in class jj2000.j2k.util.ThreadPool

Returns and idle thread and removes it from the list of idle threads.

getIdLocation() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getIdMap() - Static method in class loci.common.Location

Return the id mapping.

getIdName() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getIdx() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

Returns the index of this compressor.

getIFD(long) - Method in class loci.formats.tiff.TiffParser

Gets the IFD stored at the given offset.

getIFD() - Method in class ome.xml.model.TiffData

getIFDAsTree(TIFFIFD, String, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getIFDCount() - Method in class ome.jxr.parser.IFDParser

getIFDIndex(int, int) - Method in class loci.formats.in.NDPIReader

getIFDIndex(int) - Method in class loci.formats.in.SVSReader

getIFDIntArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in int format from this IFD, performing some error checking.

getIFDIntValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in int format from this IFD, or -1 if the given directory does not exist.

getIFDIntValue(int, int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in int format from this IFD, performing some error checking.

getIFDLongArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in long format from this IFD, performing some error checking.

getIFDLongValue(int, long) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in long format from this IFD, performing some error checking.

getIFDMetadata() - Method in class ome.jxr.parser.IFDParser

getIFDOffsets() - Method in class loci.formats.tiff.TiffParser

Gets the offsets to every IFD in the file.

getIFDRationalValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in rational format from this IFD, performing some error checking.

getIFDs() - Method in class loci.formats.in.MinimalTiffReader

Gets the list of IFDs associated with the current TIFF's image planes.

getIFDs() - Method in class loci.formats.tiff.TiffParser

Returns all IFDs in the file.

getIFDShortArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in short format from this IFD, performing some error checking.

getIFDStringValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value as a string from this IFD, performing some error checking.

getIFDTagName(int) - Static method in class loci.formats.tiff.IFD

Gets the name of the IFD tag encoded by the given number.

getIFDTextValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value as a string (regardless of type).

getIFDValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value from this IFD.

getIFDValue(int, Class) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value from this IFD, performing some error checking.

getIFDValue(TiffIFDEntry) - Method in class loci.formats.tiff.TiffParser

Retrieve the value corresponding to the given TiffIFDEntry.

getIlluminationType(String) - Method in class loci.formats.FormatReader

Retrieves an IlluminationType enumeration value for the given String.

getIlluminationType() - Method in class ome.xml.model.Channel

getImage() - Method in class loci.formats.gui.ImageViewer

Gets the currently displayed image.

getImage(byte[], int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getImage(int) - Method in class ome.xml.model.OME

getImageAcquisitionDate(int) - Method in class ome.xml.meta.AggregateMetadata

getImageAcquisitionDate(int) - Method in class ome.xml.meta.DummyMetadata

getImageAcquisitionDate(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AcquisitionDate property of Image.

getImageAcquisitionDate(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getImageAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getImageAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Image.

getImageAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getImageAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getImageAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Image.

getImageAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageBandPresence() - Method in class ome.jxr.ifd.IFDMetadata

getImageByteCount() - Method in class ome.jxr.ifd.IFDMetadata

getImageComments(int) - Method in class loci.formats.in.SlideBook6Reader

getImageCount() - Method in class loci.formats.ChannelMerger

getImageCount() - Method in class loci.formats.ChannelSeparator

getImageCount() - Method in class loci.formats.FileStitcher

getImageCount() - Method in class loci.formats.FormatReader

getImageCount() - Method in interface loci.formats.IFormatReader

Determines the number of image planes in the current file.

getImageCount() - Method in class loci.formats.ImageReader

getImageCount() - Method in class loci.formats.in.FilePatternReader

getImageCount() - Method in class loci.formats.ReaderWrapper

getImageCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getImageCount() - Method in class ome.xml.meta.AggregateMetadata

getImageCount() - Method in class ome.xml.meta.DummyMetadata

getImageCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Image elements.

getImageCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageCreationDate() - Method in class loci.formats.in.BaseTiffReader

Retrieves the image creation date.

getImageCreationDate(String[]) - Method in class loci.plugins.macro.LociFunctions

getImageData(int, int, int) - Method in class loci.formats.in.CellH5Reader

getImageData(int, int, int, int, int) - Method in class loci.formats.in.ImarisHDFReader

Retrieve an array corresponding to the specified image tile.

getImageDescription(Element) - Method in class loci.formats.in.LIFReader

getImageDescription() - Method in class loci.tests.testng.Configuration

getImageDescription() - Method in class ome.jxr.ifd.IFDMetadata

getImageDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getImageDescription(int) - Method in class ome.xml.meta.DummyMetadata

getImageDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Image.

getImageDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageDimension(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the dimnsion of the imageIndexth image.

getImageExperimenterGroupRef(int) - Method in class ome.xml.meta.AggregateMetadata

getImageExperimenterGroupRef(int) - Method in class ome.xml.meta.DummyMetadata

getImageExperimenterGroupRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterGroupRef property of Image.

getImageExperimenterGroupRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata

getImageExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata

getImageExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of Image.

getImageExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageExperimentRef(int) - Method in class ome.xml.meta.AggregateMetadata

getImageExperimentRef(int) - Method in class ome.xml.meta.DummyMetadata

getImageExperimentRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimentRef property of Image.

getImageExperimentRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageHeight() - Method in class ome.jxr.ifd.IFDMetadata

getImageID(int) - Method in class ome.xml.meta.AggregateMetadata

getImageID(int) - Method in class ome.xml.meta.DummyMetadata

getImageID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Image.

getImageID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageIndex() - Method in class loci.formats.gui.ImageViewer

Gets the index of the currently displayed image.

getImageIndex(int) - Method in class loci.formats.in.FluoviewReader

getImageIndex(String) - Method in class loci.formats.in.PCIReader

Get the image index from the image file name.

getImageInputStream() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Returns an ImageInputStream for reading.

getImageInstrumentRef(int) - Method in class ome.xml.meta.AggregateMetadata

getImageInstrumentRef(int) - Method in class ome.xml.meta.DummyMetadata

getImageInstrumentRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the InstrumentRef property of Image.

getImageInstrumentRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageLength() - Method in class loci.formats.tiff.IFD

Retrieves the image's length (TIFF tag ImageLength) from a given TIFF IFD.

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getImageMetadata(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Retrieves image metadata with non-core nodes removed.

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getImageMicrobeamManipulationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getImageMicrobeamManipulationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getImageMicrobeamManipulationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MicrobeamManipulationRef property of Image.

getImageMicrobeamManipulationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageName() - Method in class loci.formats.in.MetamorphHandler

getImageName(int) - Method in class loci.formats.in.SlideBook6Reader

getImageName() - Method in class loci.tests.testng.Configuration

getImageName(int) - Method in class ome.xml.meta.AggregateMetadata

getImageName(int) - Method in class ome.xml.meta.DummyMetadata

getImageName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Image.

getImageName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageNumber(String, int) - Method in class loci.formats.in.ZeissZVIReader

getImageOffset(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the image offset of the imageIndexth image.

getImageOffset() - Method in class ome.jxr.ifd.IFDMetadata

getImageReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getImageROIRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getImageROIRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getImageROIRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ROIRef property of Image.

getImageROIRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageROIRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getImageROIRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getImageROIRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ROIRef elements in Image.

getImageROIRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageSequence(int) - Method in class loci.formats.in.DeltavisionReader

Get the image sequence string.

getImagesPerFile() - Method in class loci.formats.FileStitcher.ExternalSeries

getImagesPerFile(String, IFormatReader) - Static method in class loci.formats.FormatTools

getImageType() - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the image type.

getImageType(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getImageType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getImageType() - Method in class ome.jxr.ifd.IFDMetadata

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getImageWidth() - Method in class loci.formats.tiff.IFD

Retrieves the image's width (TIFF tag ImageWidth) from a given TIFF IFD.

getImageWidth() - Method in class ome.jxr.ifd.IFDMetadata

getImagingDevice() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the imaging device associated with this Frame.

getImagingEnvironment() - Method in class ome.xml.model.Image

getImagingEnvironmentAirPressure(int) - Method in class ome.xml.meta.AggregateMetadata

getImagingEnvironmentAirPressure(int) - Method in class ome.xml.meta.DummyMetadata

getImagingEnvironmentAirPressure(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AirPressure property of ImagingEnvironment.

getImagingEnvironmentAirPressure(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImagingEnvironmentCO2Percent(int) - Method in class ome.xml.meta.AggregateMetadata

getImagingEnvironmentCO2Percent(int) - Method in class ome.xml.meta.DummyMetadata

getImagingEnvironmentCO2Percent(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CO2Percent property of ImagingEnvironment.

getImagingEnvironmentCO2Percent(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImagingEnvironmentHumidity(int) - Method in class ome.xml.meta.AggregateMetadata

getImagingEnvironmentHumidity(int) - Method in class ome.xml.meta.DummyMetadata

getImagingEnvironmentHumidity(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Humidity property of ImagingEnvironment.

getImagingEnvironmentHumidity(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImagingEnvironmentMap(int) - Method in class ome.xml.meta.AggregateMetadata

Gets the Map value associated with this imaging environment

getImagingEnvironmentMap(int) - Method in class ome.xml.meta.DummyMetadata

Gets the Map value associated with this imaging environment

getImagingEnvironmentMap(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MapAnnotation values from a ImagingEnvironment.

getImagingEnvironmentMap(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Gets the Map value associated with this imaging environment

getImagingEnvironmentTemperature(int) - Method in class ome.xml.meta.AggregateMetadata

getImagingEnvironmentTemperature(int) - Method in class ome.xml.meta.DummyMetadata

getImagingEnvironmentTemperature(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Temperature property of ImagingEnvironment.

getImagingEnvironmentTemperature(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImg() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getImgHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall height of the image in pixels.

getImgHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall height of the image in pixels, for the given resolution level.

getImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the image height in the reference grid.

getImgHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall height of the image in pixels.

getImgHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall height of the image in pixels, for the given resolution level.

getImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall height of the image in pixels, for the given resolution level.

getImgRes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the image resolution level to reconstruct from the codestream.

getImgULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the horizontal upper-left coordinate of the image in the reference grid.

getImgULX() - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.Tiler

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the vertical upper-left coordinate of the image in the reference grid.

getImgULY() - Method in interface jj2000.j2k.image.ImgData

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.Tiler

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall width of the image in pixels.

getImgWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall width of the image in pixels, for the given (image) resolution level.

getImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the image width in the reference grid.

getImgWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall width of the image in pixels.

getImgWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall width of the image in pixels, for the given resolution level.

getImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall width of the image in pixels, for the given resolution level.

getImmersion(String) - Method in class loci.formats.FormatReader

Retrieves an Immersion enumeration value for the given String.

getImmersion() - Method in class loci.formats.in.ND2Handler

getImmersion() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the immersion from the objective lens string.

getImmersion() - Method in class ome.xml.model.Objective

getImplementationType(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the implementation type of this wavelet transform, WT_IMPL_FULL (full-page based transform).

getImplementationType(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the implementation type of this wavelet transform, WT_IMPL_FULL (full-page based transform).

getImplementationType(int) - Method in interface jj2000.j2k.wavelet.WaveletTransform

Returns the implementation type of this wavelet transform (WT_IMPL_LINE or WT_IMPL_FRAME) for the specified component, in the current tile.

getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getIndent() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get indention (not sure of the units, think its spaces)

getIndention() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the number of spaces to indent the text in the cell

getIndentionOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the indent options bitmask (see corresponding bit getters that reference this field)

getIndex() - Method in class loci.formats.cache.CacheEvent

Gets the index relevant to the cache update, if any.

getIndex(int, int, int, int, int, int) - Method in class loci.formats.ChannelMerger

getIndex(int, int, int) - Method in class loci.formats.ChannelMerger

getIndex(int, int, int) - Method in class loci.formats.ChannelSeparator

getIndex(int, int, int, int, int, int) - Method in class loci.formats.ChannelSeparator

getIndex(int, int, int) - Method in class loci.formats.DimensionSwapper

getIndex(int, int, int, int, int, int) - Method in class loci.formats.DimensionSwapper

getIndex(int, int, int) - Method in class loci.formats.FileStitcher

getIndex(int, int, int, int, int, int) - Method in class loci.formats.FileStitcher

getIndex(int, int, int) - Method in class loci.formats.FormatReader

getIndex(int, int, int, int, int, int) - Method in class loci.formats.FormatReader

getIndex(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C and T coordinates (real sizes).

getIndex(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C, T, ModuloZ, ModuloC and ModuloT coordinates (effective sizes).

getIndex(String, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C and T coordinates (real sizes).

getIndex(String, int, int, int, int, int, int, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C, T, ModuloZ, ModuloC, ModuloT coordinates (effective sizes).

getIndex(int, int, int) - Method in interface loci.formats.IFormatReader

Gets the rasterized index corresponding to the given Z, C and T coordinates (real sizes).

getIndex(int, int, int, int, int, int) - Method in interface loci.formats.IFormatReader

Gets the rasterized index corresponding to the given Z, C, T, moduloZ, moduloC and moduloT coordinates (effective sizes).

getIndex(int, int, int) - Method in class loci.formats.ImageReader

getIndex(int, int, int, int, int, int) - Method in class loci.formats.ImageReader

getIndex() - Method in class loci.formats.in.BaseZeissReader.Tag

getIndex(int, int, int) - Method in class loci.formats.in.FilePatternReader

getIndex() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the index associated with this Frame.

getIndex(int, int, int) - Method in class loci.formats.ReaderWrapper

getIndex(int, int, int, int, int, int) - Method in class loci.formats.ReaderWrapper

getIndex(Double, Double, Double, Double[]) - Method in class loci.plugins.macro.LociFunctions

getIndex() - Method in class loci.poi.hssf.record.SeriesIndexRecord

Get the index field for the SeriesIndex record.

getIndex() - Method in class loci.poi.hssf.record.StyleRecord

get the entire index field (including the type) (see bit getters that reference this method)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the index within the HSSFWorkbook (sequence within the collection of ExtnededFormat objects)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the index within the HSSFWorkbook (sequence within the collection of Font objects)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AQUA

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLACK

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BROWN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORAL

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

getIndex() - Method in class loci.poi.hssf.util.HSSFColor

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GOLD

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIME

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.MAROON

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PINK

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PLUM

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.RED

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROSE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TAN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TEAL

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.WHITE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW

getIndex() - Method in class loci.poi.poifs.property.Property

get the index for this Property

getIndex(Object) - Method in class loci.poi.util.IntMapper

getIndex() - Method in class ome.xml.model.WellSample

getIndexCode() - Method in class loci.poi.hssf.record.FormatRecord

get the format index code (for built in formats)

getIndexColorModel() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getIndexCount() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the number of recorded indices at this Sequence.

getIndexedImage() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getIndexHash() - Static method in class loci.poi.hssf.util.HSSFColor

this function returns all colors in a hastable.

getIndexMax() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the maximum index value.

getIndexMin() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the minimum index value.

getIndexNumberFmtRecord() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the index number fmt record field for the LinkedData record.

getIndexOfColorValue() - Method in class loci.poi.hssf.record.TextRecord

Get the index of color value field for the Text record.

getIndexOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

The index within the string to which the specified formatting run applies.

getIndexToFirstSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to first sheet from supbook

getIndexToFontTable() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the index to font table field for the FontBasis record.

getIndexToLastSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to last sheet in supbook

getIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord

Convenience method to retrieve the index the name refers to.

getIndexToSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to sup book

getInfo() - Method in class loci.formats.in.SDTReader

Gets object containing SDT header information.

getInfo() - Method in class loci.plugins.prefs.Option

Gets documentation about the option.

getInfo(String) - Method in class loci.plugins.prefs.OptionsList

Gets the documentation for the option with the given key.

getInfoRecordAt(int) - Method in class loci.poi.hssf.record.ExtSSTRecord

getINI() - Method in class loci.tests.testng.Configuration

getIniFile(String) - Method in class loci.formats.in.FV1000Reader

getInputOrder() - Method in class loci.formats.DimensionSwapper

getInputOrder(int) - Method in class loci.plugins.in.ImporterOptions

getInputStream() - Method in class loci.common.NIOInputStream

Returns the underlying InputStream.

getInputStream() - Method in class loci.common.ZipHandle

Returns the DataInputStream corresponding to the backing Zip entry.

getInputStream(String) - Method in interface loci.formats.services.POIService

Retrieve an InputStream corresponding to the given file name.

getInputStream(String) - Method in class loci.formats.services.POIServiceImpl

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Returns a shared instance of a BaselineTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

Returns a shared instance of an EXIFGPSTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

Returns the shared instance of EXIFInteroperabilityTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

Returns a shared instance of an EXIFParentTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

Returns a shared instance of an EXIFTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

Returns a shared instance of a FaxTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

Returns a shared instance of a GeoTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

getInstance() - Static method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat

getInstance(Class<T>) - Method in class loci.common.services.ServiceFactory

Retrieves an instance of a given service.

getInstance(int) - Static method in class loci.formats.gui.TwoChannelColorSpace

getInstance() - Method in class loci.poi.ddf.EscherRecord

Returns the instance part of the option record.

getInstance() - Static method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the singleton instance of the default SectionIDMap.

getInstance() - Static method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getInstance(int) - Static method in class loci.poi.util.BitFieldFactory

getInstitution() - Method in class ome.xml.model.Experimenter

getInstrument() - Method in class ome.xml.model.Detector

getInstrument() - Method in class ome.xml.model.Dichroic

getInstrument() - Method in class ome.xml.model.Filter

getInstrument() - Method in class ome.xml.model.FilterSet

getInstrument() - Method in class ome.xml.model.LightSource

getInstrument() - Method in class ome.xml.model.Objective

getInstrument(int) - Method in class ome.xml.model.OME

getInstrumentAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getInstrumentAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getInstrumentAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Instrument.

getInstrumentAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getInstrumentAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getInstrumentAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getInstrumentAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Instrument.

getInstrumentAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getInstrumentCount() - Method in class ome.xml.meta.AggregateMetadata

getInstrumentCount() - Method in class ome.xml.meta.DummyMetadata

getInstrumentCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Instrument elements.

getInstrumentCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getInstrumentID(int) - Method in class ome.xml.meta.AggregateMetadata

getInstrumentID(int) - Method in class ome.xml.meta.DummyMetadata

getInstrumentID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Instrument.

getInstrumentID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getInt(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the integer type attribute.

getInt(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an int value from a byte array

getInt(byte[]) - Static method in class loci.poi.util.LittleEndian

get an int value from the beginning of a byte array

getIntArray(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the integer type attribute.

getIntArray() - Method in class loci.plugins.util.RecordedImageProcessor

getIntArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets the integer array from an IIOMetadataNode.

getIntAttribute(Node, String, int, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getIntAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getIntAttribute(Node, String, int, boolean, boolean, int, int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getIntAttribute(Node, String, boolean, int, int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getIntegerValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getIntegration() - Method in class ome.xml.model.DetectorSettings

getIntElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its integer value from an IIOMetadataNode.

getIntellectualProperty() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the IntellectualProperty flag.

getInterleaved() - Method in class ome.xml.model.Pixels

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply the component transformation associated with the current tile.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component, using the 'transfer type' defined in the block given as argument.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply the inverse component transformation associated with the current tile.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns a block of image data containing the specifed rectangular area, in the specified component, as a reference to the internal buffer (see below).

getInterpolate() - Method in class loci.plugins.util.RecordedImageProcessor

getInterpolatedPixel(double, double) - Method in class loci.plugins.util.RecordedImageProcessor

getInts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getInts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getInts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getIntValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock

getIris() - Method in class ome.xml.model.Objective

getItalic() - Method in class loci.poi.hssf.usermodel.HSSFFont

get whether to use italics or not

getIteration() - Method in class loci.poi.hssf.record.IterationRecord

get whether or not to iterate for calculations

getIterations() - Method in class loci.poi.hssf.record.CalcCountRecord

get the number of iterations to perform

getIterator() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getIterator() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getIterator() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getJavaDate(double) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a excel date, converts it into a Date.

getJavaDate(double, boolean) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given an Excel date with either 1900 or 1904 date windowing, converts it to a java.util.Date.

getJDKImageReaderWriterSPI(ServiceRegistry, String, boolean) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getJPEGBuf() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the JPEG image buffer associated with this decompressor instance.

getJPEGSize() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the size of the JPEG image (in bytes) associated with this decompressor instance.

getJPEGTablesReader() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor

Retrieves a JPEG reader which supports native JPEG stream metadata.

getJustifyLast() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Dunno.

getKerSpecType(int) - Method in class jj2000.j2k.wavelet.WTFilterSpec

Returns the type of specification for the filters in the specified component and tile.

getKey() - Method in class loci.formats.in.BaseZeissReader.Tag

getKey(int) - Method in class loci.formats.in.BaseZeissReader.Tag

Return the string corresponding to the given ID.

getKey(int) - Method in class loci.formats.in.MetamorphReader

getKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation

getKey() - Method in class loci.plugins.prefs.Option

Gets the option's key name.

getKey() - Method in class loci.poi.util.BinaryTree.Node

getKey() - Method in class loci.tests.testng.ThreadNameBasedDiscriminator

getKeyboardShortcut() - Method in class loci.poi.hssf.record.NameRecord

returns the keyboard shortcut

getKeyForValue(Object) - Method in class loci.poi.util.BinaryTree

Returns the key to which this map maps the specified value.

getKeywords() - Method in class loci.poi.hpsf.SummaryInformation

Returns the keywords (or null).

getLabel() - Method in class loci.plugins.prefs.Option

Gets label describing the option.

getLabel(String) - Method in class loci.plugins.prefs.OptionsList

Gets the label for the option with the given key.

getLabelAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Label.

getLabelAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelColorRgb() - Method in class loci.poi.hssf.record.TickRecord

Get the label color rgb field for the Tick record.

getLabelFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Label.

getLabelFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Label.

getLabelFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Label.

getLabelFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Label.

getLabelFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Label.

getLabelFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the label frequency field for the CategorySeriesAxis record.

getLabelID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelID(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Label.

getLabelID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Label.

getLabelLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Label.

getLabelLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelPosition() - Method in class loci.poi.hssf.record.TickRecord

Get the label position field for the Tick record.

getLabels() - Method in class loci.plugins.config.FlexWidgets

getLabels() - Method in interface loci.plugins.config.IFormatWidgets

getLabels() - Method in class loci.plugins.config.ND2Widgets

getLabels() - Method in class loci.plugins.config.PictWidgets

getLabels() - Method in class loci.plugins.config.QTWidgets

getLabels() - Method in class loci.plugins.config.SDTWidgets

getLabels() - Method in class loci.plugins.config.TiffDelegateWidgets

getLabelStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Label.

getLabelStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Label.

getLabelStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Label.

getLabelStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelText(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Label.

getLabelText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Label.

getLabelTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Label.

getLabelTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Label.

getLabelTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Label.

getLabelTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Label.

getLabelVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelX(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Label.

getLabelX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelY(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Label.

getLabelY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLandscape() - Method in class loci.poi.hssf.record.PrintSetupRecord

getLandscape() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the landscape mode.

getLaserAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Laser.

getLaserAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserFrequencyMultiplication(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserFrequencyMultiplication(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserFrequencyMultiplication(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FrequencyMultiplication property of Laser.

getLaserFrequencyMultiplication(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserID(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Laser.

getLaserID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserLaserMedium(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserLaserMedium(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserLaserMedium(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LaserMedium property of Laser.

getLaserLaserMedium(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Laser.

getLaserLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Laser.

getLaserManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserMedium(String) - Method in class loci.formats.FormatReader

Retrieves an LaserMedium enumeration value for the given String.

getLaserMedium() - Method in class ome.xml.model.Laser

getLaserModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Laser.

getLaserModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserPockelCell(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserPockelCell(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserPockelCell(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PockelCell property of Laser.

getLaserPockelCell(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserPower() - Method in class loci.formats.in.PrairieMetadata

Gets the first laserPower recorded in the configuration.

getLaserPower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserPower(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserPower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of Laser.

getLaserPower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserPulse(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserPulse(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserPulse(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Pulse property of Laser.

getLaserPulse(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserPump(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserPump(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserPump(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Pump property of Laser.

getLaserPump(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserRepetitionRate(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserRepetitionRate(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserRepetitionRate(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RepetitionRate property of Laser.

getLaserRepetitionRate(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Laser.

getLaserSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserTuneable(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserTuneable(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserTuneable(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Tuneable property of Laser.

getLaserTuneable(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserType(String) - Method in class loci.formats.FormatReader

Retrieves an LaserType enumeration value for the given String.

getLaserType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserType(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Laser.

getLaserType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Wavelength property of Laser.

getLaserWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLast() - Method in class loci.formats.FilePattern

getLast() - Method in class loci.formats.FilePatternBlock

getLastAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last author (or null).

getLastBodyBuf() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the buffer of the body of the last encoded packet.

getLastBodyLen() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the length of the body of the last encoded packet, in bytes.

getLastCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getLastCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

gets the number of the last cell contained in this row PLUS ONE.

getLastChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getLastCol() - Method in class loci.poi.hssf.record.DimensionsRecord

get the last col number for the sheet

getLastCol() - Method in class loci.poi.hssf.record.RowRecord

get the logical col number for the last cell this row plus one (0 based index)

getLastColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the last column this record defines formatting info for

getLastColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getLastColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg

getLastColumn() - Method in class loci.poi.hssf.record.MulBlankRecord

ending column (last cell this holds in the row)

getLastColumn() - Method in class loci.poi.hssf.record.MulRKRecord

ending column (last cell this holds in the row)

getLastColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getLastColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg

getLastMSOSPID() - Method in class loci.poi.ddf.EscherDgRecord

The last shape id used in this drawing group.

getLastName() - Method in class ome.xml.model.Experimenter

getLastPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getLastPrinted() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last printed time (or null).

getLastRow() - Method in class loci.poi.hssf.record.DimensionsRecord

get the last row number for the sheet

getLastRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getLastRow() - Method in class loci.poi.hssf.record.formula.AreaPtg

getLastRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getLastRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getLastRowAdd1() - Method in class loci.poi.hssf.record.IndexRecord

getLastRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getLastRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the last row on the sheet

getLastSaveDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last save time (or null).

getLatestVersion() - Method in interface loci.formats.services.OMEXMLService

Retrieves the latest supported version of the OME-XML schema.

getLatestVersion() - Method in class loci.formats.services.OMEXMLServiceImpl

getLayers() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets layers

getLeaderCount(int) - Method in class ome.xml.meta.AggregateMetadata

getLeaderCount(int) - Method in class ome.xml.meta.DummyMetadata

getLeaderCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Leader elements.

getLeaderCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLeafChildCount() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

getLeft() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the left side of the footer.

getLeft() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the left side of the header.

getLeft(int) - Method in class loci.poi.util.BinaryTree.Node

get the left node

getLeft() - Method in class mdbtools.dbengine.sql.Condition

getLeft() - Method in class mdbtools.dbengine.sql.Equation

getLeft() - Method in class mdbtools.dbengine.sql.Join

getLeftBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getLeftBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the left border color

getLeftChild(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

get a node's left child.

getLeftCol() - Method in class loci.poi.hssf.model.Sheet

getLeftCol() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the leftmost column displayed in the window

getLeftCol() - Method in class loci.poi.hssf.usermodel.HSSFSheet

The left col in the visible view when the sheet is first viewed after opening it in a viewer

getLeftColumn() - Method in class loci.poi.hssf.record.PaneRecord

Get the left column field for the Pane record.

getLeftRowGutter() - Method in class loci.poi.hssf.record.GutsRecord

get the size of the gutter that appears at the left of the rows

getLeftToRight() - Method in class loci.poi.hssf.record.PrintSetupRecord

getLeftToRight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the left to right print order.

getLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box length.

getLength() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getLength() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Returns the current length of the buffer, in bytes.

getLength() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Returns the current length of the entire bit stream.

getLength() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Returns the current length of the entire bit stream.

getLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the length of the header.

getLength(RandomAccessInputStream, int) - Method in class loci.formats.in.DicomReader

getLength(long) - Method in class loci.formats.in.OBFReader

getLength() - Method in class loci.poi.hssf.record.RecordInputStream

getLength() - Method in class loci.poi.poifs.storage.RawDataBlock

getLength() - Method in class ome.xml.model.BinData

getLengths() - Method in class loci.formats.cache.CacheStrategy

getLengths() - Method in interface loci.formats.cache.ICacheStrategy

Gets the lengths of all the axes.

getLengths(IFormatReader) - Static method in class loci.formats.tools.CacheConsole

Helper utility for constructing lengths array, used by main.

getLenRefSubexpression() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getLensNA() - Method in class loci.formats.in.MetamorphHandler

getLensNA() - Method in class ome.xml.model.Objective

getLensName(int) - Method in class loci.formats.in.SlideBook6Reader

getLetter() - Method in class loci.formats.ResourceNamer

Returns a String representing a single letter (in the case where the class instance has been initialized with a resource count lower than 26) or a concatenation of two letters (if resource count is higher than 26).

getLevels(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the decomposition number of levels in component 'n' and tile 't'.

getLH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the LH (vertical high-pass) child subband of this subband.

getLH() - Method in class jj2000.j2k.wavelet.Subband

Returns the LH (vertical high-pass) child subband of this subband.

getLH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the LH (vertical high-pass) child subband of this subband.

getLicenseCode() - Method in interface loci.formats.services.LuraWaveService

Retrieves the current license code as a string.

getLicenseCode() - Method in class loci.formats.services.LuraWaveServiceImpl

getLightEmittingDiodeAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of LightEmittingDiode.

getLightEmittingDiodeAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeID(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of LightEmittingDiode.

getLightEmittingDiodeID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of LightEmittingDiode.

getLightEmittingDiodeLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of LightEmittingDiode.

getLightEmittingDiodeManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of LightEmittingDiode.

getLightEmittingDiodeModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodePower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodePower(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodePower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of LightEmittingDiode.

getLightEmittingDiodePower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of LightEmittingDiode.

getLightEmittingDiodeSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPath() - Method in class ome.xml.model.Channel

getLightPathAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of LightPath.

getLightPathAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in LightPath.

getLightPathAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathDichroicRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathDichroicRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathDichroicRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DichroicRef property of LightPath.

getLightPathDichroicRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathEmissionFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the EmissionFilterRef property of LightPath.

getLightPathEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathEmissionFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of EmissionFilterRef elements in LightPath.

getLightPathEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathExcitationFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExcitationFilterRef property of LightPath.

getLightPathExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathExcitationFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ExcitationFilterRef elements in LightPath.

getLightPathExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightSource(int) - Method in class loci.tests.testng.Configuration

getLightSource(int) - Method in class ome.xml.model.Instrument

getLightSource() - Method in class ome.xml.model.LightSourceSettings

getLightSourceAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightSourceAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightSourceAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in LightSource.

getLightSourceAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightSourceCount(int) - Method in class ome.xml.meta.AggregateMetadata

getLightSourceCount(int) - Method in class ome.xml.meta.DummyMetadata

getLightSourceCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of LightSource elements.

getLightSourceCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightSourceSettings() - Method in class ome.xml.model.Channel

getLightSourceSettings(int) - Method in class ome.xml.model.MicrobeamManipulation

getLightSourceType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightSourceType(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightSourceType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the type of a LightSource.

getLightSourceType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLimit() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getLimitedSIndexFromSlope(float) - Static method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Returns the index of a slope for the summary table, limiting to the admissible values.

getLine(double, double, double, double) - Method in class loci.plugins.util.RecordedImageProcessor

getLineAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLineAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Line.

getLineAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineCap(String) - Method in class loci.formats.FormatReader

Retrieves an LineCap enumeration value for the given String.

getLineCap() - Method in class ome.xml.model.Shape

getLineColor() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the line color field for the LineFormat record.

getLineCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the line count or 0 if the DocumentSummaryInformation does not contain a line count.

getLineFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Line.

getLineFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Line.

getLineFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Line.

getLineFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Line.

getLineFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Line.

getLineFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineID(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Line.

getLineID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Line.

getLineLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Line.

getLineLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineMarkerEnd(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineMarkerEnd(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineMarkerEnd(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MarkerEnd property of Line.

getLineMarkerEnd(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineMarkerStart(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineMarkerStart(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineMarkerStart(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MarkerStart property of Line.

getLineMarkerStart(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLinePattern() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the line pattern field for the LineFormat record.

getLinesPerFrame() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the lines per frame for this Frame.

getLineStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Line.

getLineStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Line.

getLineStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Line.

getLineStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineStyle() - Method in class loci.poi.hssf.usermodel.HSSFShape

getLineStyleColor() - Method in class loci.poi.hssf.usermodel.HSSFShape

The color applied to the lines of this shape.

getLineText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineText(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Line.

getLineText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Line.

getLineTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Line.

getLineTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Line.

getLineTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Line.

getLineTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Line.

getLineVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineWidth() - Method in class jj2000.j2k.util.MsgPrinter

Returns the line width that is used for formatting.

getLineWidth() - Method in class loci.poi.hssf.usermodel.HSSFShape

getLineX1(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineX1(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineX1(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X1 property of Line.

getLineX1(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineX2(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineX2(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineX2(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X2 property of Line.

getLineX2(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineY1(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineY1(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineY1(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y1 property of Line.

getLineY1(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineY2(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineY2(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineY2(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y2 property of Line.

getLineY2(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLink1() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the link 1 field for the ObjectLink record.

getLink2() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the link 2 field for the ObjectLink record.

getLinkedAnnotation(int) - Method in class ome.xml.model.Annotation

getLinkedAnnotation(int) - Method in class ome.xml.model.Channel

getLinkedAnnotation(int) - Method in class ome.xml.model.Dataset

getLinkedAnnotation(int) - Method in class ome.xml.model.Detector

getLinkedAnnotation(int) - Method in class ome.xml.model.Dichroic

getLinkedAnnotation(int) - Method in class ome.xml.model.Experimenter

getLinkedAnnotation(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedAnnotation(int) - Method in class ome.xml.model.Filter

getLinkedAnnotation(int) - Method in class ome.xml.model.Image

getLinkedAnnotation(int) - Method in class ome.xml.model.Instrument

getLinkedAnnotation(int) - Method in class ome.xml.model.LightPath

getLinkedAnnotation(int) - Method in class ome.xml.model.LightSource

getLinkedAnnotation(int) - Method in class ome.xml.model.Objective

getLinkedAnnotation(int) - Method in class ome.xml.model.Plane

getLinkedAnnotation(int) - Method in class ome.xml.model.Plate

getLinkedAnnotation(int) - Method in class ome.xml.model.PlateAcquisition

getLinkedAnnotation(int) - Method in class ome.xml.model.Project

getLinkedAnnotation(int) - Method in class ome.xml.model.Reagent

getLinkedAnnotation(int) - Method in class ome.xml.model.ROI

getLinkedAnnotation(int) - Method in class ome.xml.model.Screen

getLinkedAnnotation(int) - Method in class ome.xml.model.Shape

getLinkedAnnotation(int) - Method in class ome.xml.model.Well

getLinkedChannel(int) - Method in class ome.xml.model.Annotation

getLinkedChannel(int) - Method in class ome.xml.model.FilterSet

getLinkedDataset(int) - Method in class ome.xml.model.Annotation

getLinkedDataset(int) - Method in class ome.xml.model.Experimenter

getLinkedDataset(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedDataset(int) - Method in class ome.xml.model.Image

getLinkedDataset(int) - Method in class ome.xml.model.Project

getLinkedDetector(int) - Method in class ome.xml.model.Annotation

getLinkedDichroic(int) - Method in class ome.xml.model.Annotation

getLinkedDichroic() - Method in class ome.xml.model.FilterSet

getLinkedDichroic() - Method in class ome.xml.model.LightPath

getLinkedEmissionFilter(int) - Method in class ome.xml.model.FilterSet

getLinkedEmissionFilter(int) - Method in class ome.xml.model.LightPath

getLinkedExcitationFilter(int) - Method in class ome.xml.model.FilterSet

getLinkedExcitationFilter(int) - Method in class ome.xml.model.LightPath

getLinkedExperiment(int) - Method in class ome.xml.model.Experimenter

getLinkedExperiment() - Method in class ome.xml.model.Image

getLinkedExperimenter(int) - Method in class ome.xml.model.Annotation

getLinkedExperimenter() - Method in class ome.xml.model.Dataset

getLinkedExperimenter() - Method in class ome.xml.model.Experiment

getLinkedExperimenter(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedExperimenter() - Method in class ome.xml.model.Image

getLinkedExperimenter() - Method in class ome.xml.model.MicrobeamManipulation

getLinkedExperimenter() - Method in class ome.xml.model.Project

getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Annotation

getLinkedExperimenterGroup() - Method in class ome.xml.model.Dataset

getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Experimenter

getLinkedExperimenterGroup() - Method in class ome.xml.model.Image

getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Leader

getLinkedExperimenterGroup() - Method in class ome.xml.model.Project

getLinkedFilter(int) - Method in class ome.xml.model.Annotation

getLinkedFilterSet() - Method in class ome.xml.model.Channel

getLinkedFilterSet(int) - Method in class ome.xml.model.Dichroic

getLinkedFilterSetEmissionFilter(int) - Method in class ome.xml.model.Filter

getLinkedFilterSetExcitationFilter(int) - Method in class ome.xml.model.Filter

getLinkedImage(int) - Method in class ome.xml.model.Annotation

getLinkedImage(int) - Method in class ome.xml.model.Dataset

getLinkedImage(int) - Method in class ome.xml.model.Experiment

getLinkedImage(int) - Method in class ome.xml.model.Experimenter

getLinkedImage(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedImage(int) - Method in class ome.xml.model.Instrument

getLinkedImage(int) - Method in class ome.xml.model.MicrobeamManipulation

getLinkedImage(int) - Method in class ome.xml.model.ROI

getLinkedImage() - Method in class ome.xml.model.WellSample

getLinkedInstrument(int) - Method in class ome.xml.model.Annotation

getLinkedInstrument() - Method in class ome.xml.model.Image

getLinkedLaser(int) - Method in class ome.xml.model.Pump

getLinkedLeader(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedLightPath(int) - Method in class ome.xml.model.Annotation

getLinkedLightPath(int) - Method in class ome.xml.model.Dichroic

getLinkedLightPathEmissionFilter(int) - Method in class ome.xml.model.Filter

getLinkedLightPathExcitationFilter(int) - Method in class ome.xml.model.Filter

getLinkedLightSource(int) - Method in class ome.xml.model.Annotation

getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Experimenter

getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Image

getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.ROI

getLinkedObjective(int) - Method in class ome.xml.model.Annotation

getLinkedPlane(int) - Method in class ome.xml.model.Annotation

getLinkedPlate(int) - Method in class ome.xml.model.Annotation

getLinkedPlate(int) - Method in class ome.xml.model.Screen

getLinkedPlateAcquisition(int) - Method in class ome.xml.model.Annotation

getLinkedPlateAcquisition(int) - Method in class ome.xml.model.WellSample

getLinkedProject(int) - Method in class ome.xml.model.Annotation

getLinkedProject(int) - Method in class ome.xml.model.Dataset

getLinkedProject(int) - Method in class ome.xml.model.Experimenter

getLinkedProject(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedPump() - Method in class ome.xml.model.Laser

getLinkedReagent(int) - Method in class ome.xml.model.Annotation

getLinkedReagent() - Method in class ome.xml.model.Well

getLinkedROI(int) - Method in class ome.xml.model.Annotation

getLinkedROI(int) - Method in class ome.xml.model.Image

getLinkedROI(int) - Method in class ome.xml.model.MicrobeamManipulation

getLinkedScreen(int) - Method in class ome.xml.model.Annotation

getLinkedScreen(int) - Method in class ome.xml.model.Plate

getLinkedShape(int) - Method in class ome.xml.model.Annotation

getLinkedWell(int) - Method in class ome.xml.model.Annotation

getLinkedWell(int) - Method in class ome.xml.model.Reagent

getLinkedWellSample(int) - Method in class ome.xml.model.Image

getLinkedWellSample(int) - Method in class ome.xml.model.PlateAcquisition

getLinksDirty() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns true if the custom links are dirty.

getLinkType() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the link type field for the LinkedData record.

getListAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getListAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a ListAnnotation.

getListAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of ListAnnotation.

getListAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of ListAnnotation.

getListAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getListAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ListAnnotation elements.

getListAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of ListAnnotation.

getListAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of ListAnnotation.

getListAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of ListAnnotation.

getListAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListeners(POIFSDocumentPath, String) - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

get am iterator of listeners for a particular document

getLL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the LL child subband of this subband.

getLL() - Method in class jj2000.j2k.wavelet.Subband

Returns the LL child subband of this subband.

getLL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the LL child subband of this subband.

getLoadList(int[]) - Method in class loci.formats.cache.CacheStrategy

getLoadList(int[]) - Method in interface loci.formats.cache.ICacheStrategy

Gets the indices of the objects to cache, surrounding the object at the given position.

getLoc() - Method in class loci.poi.hssf.model.Sheet

Returns the location pointer to the first record to look for when adding rows/values

getLocation() - Method in class loci.plugins.in.ImporterOptions

getLocationFromResourceName(Location, String, int, String) - Method in class loci.formats.ResourceNamer

Creates a new Location instance using the provided parent path and child node name.

getLocationInfo() - Method in class loci.plugins.in.ImporterOptions

getLocations() - Method in class loci.plugins.in.ImporterOptions

getLocked() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the cell's using this style are to be locked

getLocked() - Method in class ome.xml.model.Shape

getLogger(Class) - Static method in class loci.poi.util.POILogFactory

Get a logger, based on a class name

getLogger(String) - Static method in class loci.poi.util.POILogFactory

Get a logger, based on a String

getLong(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a long value from a byte array

getLong(byte[]) - Static method in class loci.poi.util.LittleEndian

get a long value from the beginning of a byte array

getLongAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getLongAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a LongAnnotation.

getLongAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of LongAnnotation.

getLongAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of LongAnnotation.

getLongAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of LongAnnotation elements.

getLongAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of LongAnnotation.

getLongAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of LongAnnotation.

getLongAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of LongAnnotation.

getLongAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of LongAnnotation.

getLongAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Convers an Index16ColorModel to a 2D short array.

getLookupTable(Map) - Method in class loci.formats.in.AmiraReader

getLookupTable() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the color lookup table stored in the file, or null if a lookup table is not present.

getLookupTableComponentCount() - Method in class loci.formats.ChannelFiller

Gets the number of color components in the lookup table.

getLossless() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets lossless.

getLossless() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets encodingRate

getLotNumber() - Method in class ome.xml.model.ManufacturerSpec

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.

getLPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the equivalent low-pass synthesis waveform of a cascade of filters, given the syhthesis waveform of the previous stage.

getLSMFileFromSeries(int) - Method in class loci.formats.in.ZeissLSMReader

getLUT(IndexColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Gets the LUT from the IndexColorModel as an two-dimensional byte array.

getLUT() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the LUT.

getLutNames() - Method in class loci.formats.in.LeicaHandler

getLutUpdateMode() - Method in class loci.plugins.util.RecordedImageProcessor

getMagnification(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getMagnification() - Method in class loci.formats.in.ND2Handler

getMagnification() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the magnification from the objective lens string.

getMagnification(int) - Method in class loci.formats.in.SlideBook6Reader

getMagnification() - Method in class loci.formats.in.SVSReader

getMagnitudes() - Method in class loci.formats.in.IM3Reader.Spectrum

getMainDefDecompType() - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the main default decomposition type.

getMainDefLevels() - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the main default decomposition number of levels.

getMajorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the major increment field for the ValueRange record.

getMajorTickType() - Method in class loci.poi.hssf.record.TickRecord

Get the major tick type field for the Tick record.

getMajorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the major unit field for the AxisOptions record.

getMajorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the major unit value field for the AxisOptions record.

getManager() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the manager (or null).

getManufacturer() - Method in class ome.xml.model.ManufacturerSpec

getMap() - Method in class loci.formats.tools.AmiraParameters

getMap() - Method in class ome.xml.model.GenericExcitationSource

getMap() - Method in class ome.xml.model.ImagingEnvironment

getMapAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getMapAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a MapAnnotation.

getMapAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of MapAnnotation.

getMapAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of MapAnnotation.

getMapAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of MapAnnotation elements.

getMapAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of MapAnnotation.

getMapAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of MapAnnotation.

getMapAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of MapAnnotation.

getMapAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

Gets the Map value associated with this annotation

getMapAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

Gets the Map value associated with this annotation

getMapAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the values from a MapAnnotation.

getMapAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Gets the Map value associated with this annotation

getMappedBuffer(int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

Returns a MappedByteBuffer which memory maps at least from the channel position corresponding to the current stream position to len bytes beyond.

getMappedFile(String) - Static method in class loci.common.Location

Gets the random access handle for the given id.

getMappedId(String) - Static method in class loci.common.Location

Gets the actual filename on disk for the given id.

getMargin(short) - Method in class loci.poi.hssf.model.Sheet

Gets the size of the margin in inches.

getMargin() - Method in class loci.poi.hssf.record.BottomMarginRecord

Get the margin field for the BottomMargin record.

getMargin() - Method in class loci.poi.hssf.record.LeftMarginRecord

Get the margin field for the LeftMargin record.

getMargin() - Method in interface loci.poi.hssf.record.Margin

Get the margin field for the Margin.

getMargin() - Method in class loci.poi.hssf.record.RightMarginRecord

Get the margin field for the RightMargin record.

getMargin() - Method in class loci.poi.hssf.record.TopMarginRecord

Get the margin field for the TopMargin record.

getMargin(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the size of the margin in inches.

getMarginBottom() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

Gets the bottom margin within the textbox.

getMarginLeft() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getMarginRight() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getMargins() - Method in class loci.poi.hssf.model.Sheet

Returns the array of margins.

getMarginTop() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getMarker(String) - Method in class loci.formats.FormatReader

Retrieves an Marker enumeration value for the given String.

getMarker() - Method in class loci.poi.ddf.EscherBitmapBlip

getMarkerEnd() - Method in class ome.xml.model.Line

getMarkerEnd() - Method in class ome.xml.model.Polyline

getMarkerStart() - Method in class ome.xml.model.Line

getMarkerStart() - Method in class ome.xml.model.Polyline

getMask() - Method in class loci.plugins.util.RecordedImageProcessor

getMask() - Method in class ome.xml.model.BinData

getMaskAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Mask.

getMaskAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskArray() - Method in class loci.plugins.util.RecordedImageProcessor

getMaskFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Mask.

getMaskFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Mask.

getMaskFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Mask.

getMaskFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Mask.

getMaskFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Mask.

getMaskFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskHeight(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskHeight(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskHeight(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Height property of Mask.

getMaskHeight(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskID(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Mask.

getMaskID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Mask.

getMaskLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Mask.

getMaskLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Mask.

getMaskStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Mask.

getMaskStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Mask.

getMaskStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskText(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Mask.

getMaskText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Mask.

getMaskTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Mask.

getMaskTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Mask.

getMaskTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Mask.

getMaskTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Mask.

getMaskVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Width property of Mask.

getMaskWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskX(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Mask.

getMaskX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskY(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Mask.

getMaskY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMax() - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each tile-component

getMax() - Method in class loci.plugins.util.RecordedImageProcessor

getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Returns the number of bytes remaining available in the bit stream.

getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Returns the number of bytes remaining available in the bit stream.

getMaxBitDepth() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getMaxCBlkHeight() - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the maximum code-block's height

getMaxCBlkWidth() - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the maximum code-block's width

getMaxChange() - Method in class loci.poi.hssf.record.DeltaRecord

get the maximum change

getMaxCompHeight() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getMaxCompImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the maximum height among all components

getMaxCompImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the maximum width among all components

getMaxCompWidth() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getMaxFieldCount(Integer) - Static method in class loci.formats.FormatTools

getMaximumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the maximum axis value field for the ValueRange record.

getMaximumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the maximum category field for the AxisOptions record.

getMaximumFieldCount() - Method in class ome.xml.model.PlateAcquisition

getMaximumSize() - Method in class loci.formats.gui.CacheIndicator

getMaximumSize() - Method in class loci.formats.gui.DataConverter.RowPanel

getMaxInComp(int) - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each tile for specified component

getMaxInTile(int) - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each component in specified tile

getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the maximum number of magnitude bits in any subband in the current tile.

getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband of the current tile.

getMaxMagBitsDerived(Subband, int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband in the given tile-component if derived quantization is used

getMaxMagBitsExpounded(Subband, int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband in the given tile-component if expounded quantization is used

getMaxMagBitsRev(Subband, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband of the current tile if reversible quantization is used

getMaxThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

getMaxTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the horizontal index of the rightmost column of tiles.

getMaxTileX() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getMaxTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the vertical index of the bottom row of tiles.

getMaxTileY() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getMaxValue() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getMaxValue() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getMaxX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the column immediatetely to the right of the rightmost column of the image.

getMaxY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the Y coordinate of the row immediately below the bottom row of the image.

getMCUHeight(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the MCU block height for the given level of chrominance subsampling.

getMCUWidth(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the MCU block width for the given level of chrominance subsampling.

getMD5() - Method in class loci.tests.testng.Configuration

getMDBFile(String) - Method in class loci.formats.in.ZeissLSMReader

getMeasurementTime() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getMedium(String) - Method in class loci.formats.FormatReader

Retrieves an Medium enumeration value for the given String.

getMedium() - Method in class ome.xml.model.ObjectiveSettings

getMember(String) - Method in interface loci.formats.services.JHDFService

Retrieves the all members of a group.

getMember(String) - Method in class loci.formats.services.JHDFServiceImpl

getMemoFile(String) - Method in class loci.formats.Memoizer

Constructs a File object from id string.

getMemory() - Method in class loci.tests.testng.Configuration

getMemoryUsage() - Method in class loci.plugins.in.ImportProcess

Gets a projection of required memory in bytes.

getMergeCells() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to merge cells

getMergedRegionAt(int) - Method in class loci.poi.hssf.model.Sheet

getMergedRegionAt(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the region at a particular index

getMessage() - Method in enum loci.plugins.in.ImportStep

getMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the current IIOMetadata object.

getMetadata() - Method in class loci.common.xml.MetadataHandler

getMetadata() - Method in class loci.formats.in.ND2Handler

getMetadata() - Method in class ome.jxr.JXRReader

getMetadataFile() - Method in class ome.xml.model.BinaryOnly

getMetadataLevel() - Method in class loci.formats.in.DefaultMetadataOptions

getMetadataLevel() - Method in interface loci.formats.in.MetadataOptions

getMetadataOnly() - Method in class ome.xml.model.Pixels

getMetadataOptions() - Method in class loci.formats.DelegateReader

getMetadataOptions() - Method in class loci.formats.FormatReader

getMetadataOptions() - Method in class loci.formats.ImageReader

getMetadataOptions() - Method in interface loci.formats.IMetadataConfigurable

getMetadataOptions() - Method in class loci.formats.ReaderWrapper

getMetadataRetrieve() - Method in class loci.formats.FormatWriter

getMetadataRetrieve() - Method in interface loci.formats.IFormatWriter

Retrieves the current metadata retrieval object for this writer.

getMetadataRetrieve() - Method in class loci.formats.ImageWriter

getMetadataRetrieve() - Method in class loci.formats.WriterWrapper

getMetadataRoot(String) - Method in class loci.formats.in.LIFReader

getMetadataStore() - Method in class loci.formats.FileStitcher

getMetadataStore() - Method in class loci.formats.FormatReader

getMetadataStore() - Method in interface loci.formats.IFormatReader

Retrieves the current metadata store for this reader.

getMetadataStore() - Method in class loci.formats.ImageReader

getMetadataStore() - Method in class loci.formats.in.FilePatternReader

getMetadataStore() - Method in class loci.formats.Memoizer

getMetadataStore() - Method in class loci.formats.ReaderWrapper

getMetadataStoreForConversion() - Method in class loci.formats.in.OMETiffReader

Returns a MetadataStore that is populated in such a way as to be usable by an IFormatWriter.

getMetadataStoreForDisplay() - Method in class loci.formats.in.OMETiffReader

Returns a MetadataStore that is populated in such a way as to produce valid OME-XML.

getMetadataStoreRoot() - Method in class loci.formats.FileStitcher

getMetadataStoreRoot() - Method in class loci.formats.FormatReader

getMetadataStoreRoot() - Method in interface loci.formats.IFormatReader

Retrieves the current metadata store's root object.

getMetadataStoreRoot() - Method in class loci.formats.ImageReader

getMetadataStoreRoot() - Method in class loci.formats.in.FilePatternReader

getMetadataStoreRoot() - Method in class loci.formats.ReaderWrapper

getMetadataString(String) - Method in class loci.plugins.in.ImporterMetadata

Returns a string with each key/value pair on its own line.

getMetadataType() - Method in enum loci.formats.tiff.PhotoInterp

Retrieves the metadata type of the photometric interpretation.

getMetadataValue(String) - Method in class loci.formats.FormatReader

getMetadataValue(String) - Method in interface loci.formats.IFormatReader

Obtains the specified metadata field's value for the current file.

getMetadataValue(String) - Method in class loci.formats.ImageReader

getMetadataValue(String) - Method in class loci.formats.in.FilePatternReader

getMetadataValue(String) - Method in class loci.formats.ReaderWrapper

getMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions

getMethod() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the method to define the color space.

getMethodForMQLengthCalc() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets methodForMQLengthCalc

getMethodForMQTermination() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets methodForMQTermination

getMethodStack() - Method in class loci.plugins.util.BFVirtualStack

getMethodStack() - Method in class loci.plugins.util.RecordedImageProcessor

getMicrobeamManipulation(int) - Method in class ome.xml.model.Experiment

getMicrobeamManipulation() - Method in class ome.xml.model.LightSourceSettings

getMicrobeamManipulationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationCount(int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of MicrobeamManipulation elements.

getMicrobeamManipulationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationDescription(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of MicrobeamManipulation.

getMicrobeamManipulationDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationExperimenterRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationExperimenterRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationExperimenterRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of MicrobeamManipulation.

getMicrobeamManipulationExperimenterRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationID(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of MicrobeamManipulation.

getMicrobeamManipulationID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Attenuation property of LightSourceSettings.

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of LightSourceSettings elements in MicrobeamManipulation.

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of LightSourceSettings.

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Wavelength property of LightSourceSettings.

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of MicrobeamManipulationRef elements.

getMicrobeamManipulationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationROIRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationROIRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationROIRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ROIRef property of MicrobeamManipulation.

getMicrobeamManipulationROIRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationROIRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationROIRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationROIRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ROIRef elements in MicrobeamManipulation.

getMicrobeamManipulationROIRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationType(String) - Method in class loci.formats.FormatReader

Retrieves an MicrobeamManipulationType enumeration value for the given String.

getMicrobeamManipulationType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationType(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of MicrobeamManipulation.

getMicrobeamManipulationType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicronsPerPixelX() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the microns per pixel along X for this Frame.

getMicronsPerPixelY() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the microns per pixel along Y for this Frame.

getMicroscope() - Method in class ome.xml.model.Instrument

getMicroscopeLotNumber(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeLotNumber(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeLotNumber(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Microscope.

getMicroscopeLotNumber(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicroscopeManufacturer(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeManufacturer(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeManufacturer(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Microscope.

getMicroscopeManufacturer(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicroscopeModel(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeModel(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeModel(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Microscope.

getMicroscopeModel(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicroscopeSerialNumber(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeSerialNumber(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeSerialNumber(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Microscope.

getMicroscopeSerialNumber(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicroscopeType(String) - Method in class loci.formats.FormatReader

Retrieves an MicroscopeType enumeration value for the given String.

getMicroscopeType(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeType(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Microscope.

getMicroscopeType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMiddleName() - Method in class ome.xml.model.Experimenter

getMillisFromTicks(long, long) - Static method in class loci.common.DateTools

Converts from two-word tick representation to milliseconds.

getMIMEType() - Method in class ome.xml.model.BinaryFile

getMin() - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each tile-component

getMin() - Method in class loci.plugins.util.RecordedImageProcessor

getMinimumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the minimum axis value field for the ValueRange record.

getMinimumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minimum category field for the AxisOptions record.

getMinimumSize() - Method in class loci.formats.gui.CacheIndicator

getMinInComp(int) - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each tile for specified component

getMinInTile(int) - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each component in specified tile

getMinMaxCalculator() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getMinMaxStore() - Method in class loci.formats.MinMaxCalculator

Retrieves the current active min-max store for the calculator.

getMinorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the minor increment field for the ValueRange record.

getMinorTickType() - Method in class loci.poi.hssf.record.TickRecord

Get the minor tick type field for the Tick record.

getMinorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minor unit field for the AxisOptions record.

getMinorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minor unit value field for the AxisOptions record.

getMinorVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the minor version of this file type box.

getMinThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

getMinTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the horizontal index of the leftmost column of tiles.

getMinTileX() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getMinTileX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMinTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the vertical index of the uppermost row of tiles.

getMinTileY() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getMinTileY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMinX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the leftmost column of the image.

getMinX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets minX

getMinX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMinY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the uppermost row of the image.

getMinY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets minY

getMinY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMMClipCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the mmclip count or 0 if the DocumentSummaryInformation does not contain a mmclip count.

getModalities() - Method in class loci.formats.in.ND2Handler

getModality(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getMode() - Method in class loci.poi.hssf.record.RefModeRecord

get the reference mode to use (HSSF uses/assumes A1)

getModel() - Method in class ome.xml.model.ManufacturerSpec

getModelObject(String) - Method in interface ome.xml.model.OMEModel

getModelObject(String) - Method in class ome.xml.model.OMEModelImpl

getModelObjects() - Method in interface ome.xml.model.OMEModel

getModelObjects() - Method in class ome.xml.model.OMEModelImpl

getModuloAlong(OMEXMLMetadata, String, int) - Method in class loci.formats.services.OMEXMLServiceImpl

Create a Modulo corresponding to the given ModuloAlong* tag.

getModuloAlongC(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongC annotation in the given Image in the given OME-XML metadata object.

getModuloAlongC(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

getModuloAlongT(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongT annotation in the given Image in the given OME-XML metadata object.

getModuloAlongT(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

getModuloAlongZ(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongZ annotation in the given Image in the given OME-XML metadata object.

getModuloAlongZ(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

getModuloC() - Method in class loci.formats.FormatReader

getModuloC() - Method in interface loci.formats.IFormatReader

getModuloC() - Method in class loci.formats.ImageReader

getModuloC() - Method in class loci.formats.in.FilePatternReader

getModuloC() - Method in class loci.formats.ReaderWrapper

getModuloT() - Method in class loci.formats.FormatReader

getModuloT() - Method in interface loci.formats.IFormatReader

getModuloT() - Method in class loci.formats.ImageReader

getModuloT() - Method in class loci.formats.in.FilePatternReader

getModuloT() - Method in class loci.formats.ReaderWrapper

getModuloZ() - Method in class loci.formats.FormatReader

getModuloZ() - Method in interface loci.formats.IFormatReader

getModuloZ() - Method in class loci.formats.ImageReader

getModuloZ() - Method in class loci.formats.in.FilePatternReader

getModuloZ() - Method in class loci.formats.ReaderWrapper

getMontage(int) - Method in class loci.formats.in.FluoviewReader

getMontageColumn(int, int) - Method in class loci.formats.in.SlideBook6Reader

getMontageRow(int, int) - Method in class loci.formats.in.SlideBook6Reader

getMsgLogger() - Static method in class jj2000.j2k.util.FacilityManager

Returns the MsgLogger registered with the current thread (the thread that calls this method).

getMsgLogger(Thread) - Static method in class jj2000.j2k.util.FacilityManager

Returns the MsgLogger registered with the thread 't' (the thread that calls this method).

getMustGroupInfo() - Method in class loci.plugins.in.ImporterOptions

getNA(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getName() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the name of the tag, as it will appear in image metadata.

getName(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the XML tag name defined in JP2 XML xsd/dtd for the box with the provided type.

getName() - Method in class loci.common.Location

Returns the name of this file, i.e.

getName() - Method in enum loci.formats.codec.JPEG2000BoxType

Returns the name of the box type.

getName() - Method in enum loci.formats.codec.JPEG2000SegmentMarker

Returns the name of the segment marker.

getName(int) - Method in class loci.formats.gui.TwoChannelColorSpace

getName() - Method in enum loci.formats.in.BaseZeissReader.Charset

getName() - Method in class loci.formats.in.IM3Reader.Spectrum

getName(String) - Method in class loci.formats.services.NetCDFServiceImpl

getName() - Method in enum loci.formats.tiff.PhotoInterp

Retrieves the given name of the photometric interpretation.

getName() - Method in class loci.poi.ddf.EscherBSERecord

The length in characters of the blip name.

getName() - Method in class loci.poi.ddf.EscherProperty

getName() - Method in class loci.poi.hpsf.CustomProperty

Gets the property's name.

GetName() - Method in class loci.poi.hssf.model.FormulaParser

Get an Identifier

getName() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getName() - Method in class loci.poi.hssf.record.StyleRecord

get the style's name

getName() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

getName() - Method in interface loci.poi.poifs.filesystem.Entry

get the name of the Entry

getName() - Method in class loci.poi.poifs.filesystem.EntryNode

get the name of the Entry

getName() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getName() - Method in class loci.poi.poifs.property.Property

Get the name of this property

getName() - Method in interface mdbtools.dbengine.Table

getName() - Method in class mdbtools.dbengine.Tests.SimpleDataSourceTable

getName() - Method in class ome.metakit.Column

Retrieve the name of the column.

getName() - Method in class ome.units.UNITS

getName() - Method in class ome.xml.model.Channel

getName() - Method in class ome.xml.model.Dataset

getName() - Method in class ome.xml.model.ExperimenterGroup

getName() - Method in class ome.xml.model.Image

getName() - Method in class ome.xml.model.MapPair

getName() - Method in class ome.xml.model.Plate

getName() - Method in class ome.xml.model.PlateAcquisition

getName() - Method in class ome.xml.model.Project

getName() - Method in class ome.xml.model.Reagent

getName() - Method in class ome.xml.model.ROI

getName() - Method in class ome.xml.model.Screen

getName() - Method in class ome.xml.model.StageLabel

GetNameAsIs() - Method in class loci.poi.hssf.model.FormulaParser

Get an Identifier AS IS, without stripping white spaces or converting to uppercase; used for literals

getNameAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the Named range

getNameDefinition() - Method in class loci.poi.hssf.record.NameRecord

gets the definition, reference (Formula)

getNameDefinitionSize() - Method in class loci.poi.hssf.record.NameRecord

getNameIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the named range index by his name Note:Excel named ranges are case-insensitive and this method performs a case-insensitive search.

getNameLength() - Method in class loci.poi.hssf.record.StyleRecord

if this is a user defined record get the length of the style name

getNameName() - Method in class loci.poi.hssf.usermodel.HSSFName

gets the name of the named range

getNameName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the named range name

getNamepos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the namepos.

getNameRecord(int) - Method in class loci.poi.hssf.model.Workbook

gets the name record

getNamespace() - Method in class ome.xml.model.Annotation

getNamespace() - Method in class ome.xml.model.ROI

getNameText() - Method in class loci.poi.hssf.record.NameRecord

gets the name

getNameTextLength() - Method in class loci.poi.hssf.record.NameRecord

gets the name length

getNamingConvention(String) - Method in class loci.formats.FormatReader

Retrieves an NamingConvention enumeration value for the given String.

getNANData() - Method in class loci.poi.hssf.record.RecordInputStream

getNativeDataType() - Method in class loci.formats.ChannelFiller

getNativeDataType() - Method in class loci.formats.ChannelMerger

getNativeDataType() - Method in class loci.formats.ChannelSeparator

getNativeDataType() - Method in class loci.formats.FormatHandler

getNativeDataType() - Method in interface loci.formats.IFormatHandler

Returns the native data type of image planes for this reader, as returned by IFormatReader.openPlane(int, int, int, int, int) or IFormatWriter.savePlane(int, java.lang.Object).

getNativeDataType() - Method in class loci.formats.ImageReader

getNativeDataType() - Method in class loci.formats.ImageWriter

getNativeDataType() - Method in class loci.formats.in.BIFormatReader

getNativeDataType() - Method in class loci.formats.in.FilePatternReader

getNativeDataType() - Method in class loci.formats.in.TextReader

getNativeDataType() - Method in class loci.formats.MinMaxCalculator

getNativeDataType() - Method in class loci.formats.out.ImageIOWriter

getNativeDataType() - Method in class loci.formats.out.LegacyQTWriter

getNativeDataType() - Method in class loci.formats.ReaderWrapper

getNativeDataType() - Method in class loci.formats.TileStitcher

getNativeDataType() - Method in class loci.formats.WriterWrapper

getNativeDataType() - Method in class loci.plugins.util.ImageProcessorReader

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates an IIOMetadataNode from this box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Creates an IIOMetadataNode from this channel definition box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates an IIOMetadataNode from this color specification box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Creates an IIOMetadataNode from this component mapping box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Creates an IIOMetadataNode from this data entry URL box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Creates an IIOMetadataNode from this file type box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Creates an IIOMetadataNode from this image header box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

creates an IIOMetadataNode from this palette box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Creates an IIOMetadataNode from this resolution box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

Creates an IIOMetadataNode from this signature box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Creates an IIOMetadataNode from this UUID box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

Creates an IIOMetadataNode from this UUID list box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

Creates an IIOMetadataNode from this XML box.

getNativeNodeForSimpleBox() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates an IIOMetadataNode from this box.

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getNChannels() - Method in class loci.plugins.util.RecordedImageProcessor

getNDFilter() - Method in class ome.xml.model.Channel

getNewCOC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COC

getNewCOD() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COD

getNewCOM() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COM

getNewCRG() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of CRG

getNewFileName() - Method in class loci.tests.testng.TimestampedLogFileAppender

getNewPOC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of POC

getNewQCC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of QCC

getNewQCD() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of QCD

getNewRGN() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of RGN

getNewSIZ() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of SIZ

getNewSOT() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of SOT

getNextBlockIndex(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableReader

return the next block index

getNextChangingElement(int, boolean, int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

getNextChild() - Method in interface loci.poi.poifs.property.Child

Get the next Child, if any

getNextChild() - Method in class loci.poi.poifs.property.Property

Get the next Child, if any

getNextChildIndex() - Method in class loci.poi.poifs.property.Property

get the next sibling

getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

getNextCodeBlock(int, CBlkRateDistStats) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the next coded code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkRateDistStats) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the next coded code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function gets a datablk from the entropy coder.

getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc

Returns the next code-block in the current tile for the specified component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the next code-block in the current tile for the specified component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function gets a datablk from the entropy coder.

getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the next code-block in the current tile for the specified component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next code-block in the current tile for the specified component.

getNextLine(List<String>) - Method in class loci.formats.in.TextReader

getNextOffset(long) - Method in class loci.formats.tiff.TiffParser

Read a file offset.

getNextResLevel() - Method in class jj2000.j2k.wavelet.Subband

Returns the first leaf subband element in the next higher resolution level.

getNextRow() - Method in class loci.poi.hssf.model.Sheet

get the NEXT RowRecord (from LOC).

getNextSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getNextSubband(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next subband that will be used to get the next code-block to return by the getNext[Intern]CodeBlock method.

getNextTag(RandomAccessInputStream) - Method in class loci.formats.in.DicomReader

getNextTag(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader

getNextValueRecord() - Method in class loci.poi.hssf.model.Sheet

get the NEXT value record (from LOC).

getNoColor() - Method in class loci.poi.hssf.record.PrintSetupRecord

getNoColor() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the black and white setting.

getNodeFromTree(IIOMetadataNode, String, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getNodeName(TIFFField) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getNodes(Element, String) - Method in class loci.formats.in.LIFReader

getNominalMagnification() - Method in class ome.xml.model.Objective

getNomRangeBits(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of bits corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component and in the current tile.

getNomRangeBits(int) - Method in interface jj2000.j2k.image.ImgData

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the image data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the image data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns the number of bits corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the nominal tile height

getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the nominal width of the tiles in the reference grid.

getNomTileHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.Tiler

Returns the nominal width of the tiles in the reference grid.

getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the nominal height of tiles

getNomTileHeight() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the nominal tiles height

getNomTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the nominal tile width

getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the nominal width of the tiles in the reference grid.

getNomTileWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.Tiler

Returns the nominal width of the tiles in the reference grid.

getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the nominal width of tiles

getNomTileWidth() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the nominal tiles width

getNonThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser

Returns non-thumbnail IFDs.

getNoOrientation() - Method in class loci.poi.hssf.record.PrintSetupRecord

getNoOrientation() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the no orientation.

getNOptPoints() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the number of layers to optimize, or optimization points, as specified by this object.

getNormalZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the zoom magnification in normal view

getNoROIDescaling() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Gets noROIDescaling

getNoteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the note count or 0 if the DocumentSummaryInformation does not contain a note count.

getNoteRecord() - Method in class loci.poi.hssf.model.CommentShape

Return the NoteRecord holding the comment attributes

getNotes() - Method in class loci.poi.hssf.record.PrintSetupRecord

getNotes() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the print notes.

getNoWlzMsg() - Method in interface loci.formats.services.WlzService

Gets the text string for when Woolz has not been found.

getNoWlzMsg() - Method in class loci.formats.services.WlzServiceImpl

GetNum() - Method in class loci.poi.hssf.model.FormulaParser

Get a Number

getNum() - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor

Returns numerator

getNumAreas() - Method in class loci.poi.hssf.record.MergeCellsRecord

get the number of merged areas.

getNumAxis() - Method in class loci.poi.hssf.record.AxisUsedRecord

Get the num axis field for the AxisUsed record.

getNumBands() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the integer used to represent the tag.

getNumber(String) - Method in class loci.formats.NumberFilter

Gets numbers filling the asterisk positions.

getNumber(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

Gets the number attribute of the LittleEndian class

getNumberOfBands() - Method in enum ome.jxr.image.FrequencyBand

getNumberOfBuiltinBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the number of builtin and reserved builtinFormats

getNumberOfChannels() - Method in class ome.jxr.ifd.IFDMetadata

getNumberOfChannels() - Method in enum ome.jxr.ifd.PixelFormat

getNumberOfElementsInArray() - Method in class loci.poi.ddf.EscherArrayProperty

getNumberOfElementsInMemory() - Method in class loci.poi.ddf.EscherArrayProperty

getNumberOfEntries() - Method in class ome.jxr.ifd.IFDContainer

Returns the number of entries in this IFD Container.

getNumberOfExpressionTokens() - Method in class loci.poi.hssf.record.FormulaRecord

get the size of the stack

getNumberOfFontRecords() - Method in class loci.poi.hssf.model.Workbook

gets the number of font records

getNumberOfFonts() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of fonts in the font table

getNumberOfInfoRecsForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord

getNumberOfNames() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the total number of named ranges in the workboko

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AddPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AttrPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ConcatPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.DividePtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.EqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the number of operands for the Less than operator

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the number of operands for the Less than operator

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.OperationPtg

The number of operands expected by the operations

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PercentPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PowerPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.RangePtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.SubtractPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnionPtg

getNumberOfSheets() - Method in class loci.poi.hssf.record.SupBookRecord

getNumberOfSheets() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of spreadsheets in the workbook (this will be three after serialization)

getNumberPtgFromString(String, String, String) - Method in class loci.poi.hssf.model.FormulaParser

Get a PTG for an integer from its string representation.

getNumberValue() - Method in class ome.xml.model.primitives.NonNegativeFloat

getNumberValue() - Method in class ome.xml.model.primitives.NonNegativeInteger

getNumberValue() - Method in class ome.xml.model.primitives.NonNegativeLong

getNumberValue() - Method in class ome.xml.model.primitives.PercentFraction

getNumberValue() - Method in class ome.xml.model.primitives.PositiveFloat

getNumberValue() - Method in class ome.xml.model.primitives.PositiveInteger

getNumberValue() - Method in class ome.xml.model.primitives.PositiveLong

getNumberValue() - Method in interface ome.xml.model.primitives.PrimitiveNumber

getNumBits(int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

The number of bits represented by the value which should be a legal length for a color table.

getNumBits(int) - Static method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

getNumBreaks() - Method in class loci.poi.hssf.record.PageBreakRecord

getNumBubbleValues() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num bubble values field for the Series record.

getNumBytes(int) - Method in class loci.formats.in.GatanReader

getNumCaptures() - Method in class loci.formats.in.SlideBook6Reader

getNumCategories() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num categories field for the Series record.

getNumCellOffsets() - Method in class loci.poi.hssf.record.DBCellRecord

get the number of cell offsets in the celloffset array

getNumCellStyles() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of styles the workbook contains

getNumChannels(int) - Method in class loci.formats.in.SlideBook6Reader

getNumChildren() - Method in class loci.poi.hssf.model.Node

getNumCodedBytes() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Returns the number of bytes that are necessary from the compressed output stream to decode all the symbols that have been coded this far.

getNumColumnBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns the number of column page breaks

getNumColumns() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getNumColumns() - Method in class loci.poi.hssf.record.MulBlankRecord

get the number of columns this contains (last-first +1)

getNumColumns() - Method in class loci.poi.hssf.record.MulRKRecord

get the number of columns this contains (last-first +1)

getNumCOM() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns the number of found COM marker segments

getNumComp() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the number of color components.

getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the number of image components.

getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets the number of components

getNumComponents() - Method in class loci.formats.gui.TwoChannelColorSpace

getNumComps() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the number of components in the image.

getNumComps() - Method in interface jj2000.j2k.image.ImgData

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.input.ImgReader

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the number of components in the image.

getNumComps() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the number of components in the image.

getNumCtxts() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Returns the number of contexts in the arithmetic coder.

getNumCtxts() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Returns the number of contexts in the arithmetic coder.

getNumDbcells() - Method in class loci.poi.hssf.record.IndexRecord

getNumDecompositionLevels() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets numDecompositionLevels.

getNumEntries() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the number of palette entries.

getNumEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.BooleanIM3Record

Get the # of boolean values in this record

getNumEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.FloatIM3Record

Get the # of floating-point values in this record

getNumEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.IntIM3Record

Get the # of integer values in this record

getNumerator() - Method in class loci.formats.tiff.TiffRational

Gets this number's numerator.

getNumerator() - Method in class loci.poi.hssf.record.SCLRecord

Get the numerator field for the SCL record.

getNumerator() - Method in class ome.jxr.ifd.JXRRational

getNumericalAperture() - Method in class loci.formats.in.ND2Handler

getNumericCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a number.

getNumericFields(GenericDialog) - Method in class loci.plugins.in.ColorDialog

getNumericFields(GenericDialog) - Static method in class loci.plugins.util.WindowTools

getNumExFormats() - Method in class loci.poi.hssf.model.Workbook

get the number of ExtendedFormat records contained in this workbook.

getNumFoundMarkSeg() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the number of found marker segments in the current header.

getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC

getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD

getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the number of guard bits used by this quantizer in the given tile-component.

getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the number of guard bits used by this quantizer in the given tile-component.

getNumIdClusters() - Method in class loci.poi.ddf.EscherDggRecord

Number of id clusters + 1

getNumImages() - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the number of images in the ImageInputStream.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

Overrides the method defined in the superclass.

getNumInfoRecords() - Method in class loci.poi.hssf.record.ExtSSTRecord

getNumLayers() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Returns the number of layers that are actually generated.

getNumMergedRegions() - Method in class loci.poi.hssf.model.Sheet

getNumMergedRegions() - Method in class loci.poi.hssf.usermodel.HSSFSheet

returns the number of merged regions

getNumNames() - Method in class loci.poi.hssf.model.Workbook

gets the total number of names

getNumOfREFRecords() - Method in class loci.poi.hssf.record.ExternSheetRecord

returns the number of REF Records, which is in model

getNumOfREFStructures() - Method in class loci.poi.hssf.record.ExternSheetRecord

return the number of the REF structors , that is in Excel file

getNumPositions(int) - Method in class loci.formats.in.SlideBook6Reader

getNumPrecinct(int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Gets the number of precincts in a given component and resolution level.

getNumRecords() - Method in class loci.poi.hssf.model.Sheet

Returns the number of low level binary records in this sheet.

getNumRecords() - Method in class loci.poi.hssf.model.Workbook

getNumRefs() - Method in class loci.poi.hssf.record.SelectionRecord

get the number of cell refs (we don't support selection so set to 0

getNumRowBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns the number of row page breaks

getNumSelectedTabs() - Method in class loci.poi.hssf.record.WindowOneRecord

get the number of selected tabs

getNumSeries() - Method in class loci.formats.in.LegacyND2Reader

getNumShapeIdsUsed() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster

getNumShapes() - Method in class loci.poi.ddf.EscherDgRecord

The number of shapes in this drawing group.

getNumShapesSaved() - Method in class loci.poi.ddf.EscherDggRecord

getNumSheets() - Method in class loci.poi.hssf.model.Workbook

returns the number of boundsheet objects contained in this workbook.

getNumStrings() - Method in class loci.poi.hssf.record.SSTRecord

getNumStringsPerBucket() - Method in class loci.poi.hssf.record.ExtSSTRecord

getNumThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getNumTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the number of TIFFFields in this directory.

getNumTileParts(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Returns the number of tile-part found for a given tile

getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets the number of tiles

getNumTiles(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the total number of tiles in the image.

getNumTiles() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getNumTiles(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the total number of tiles in the image.

getNumTiles() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the number of tiles in the image

getNumTiles(Point) - Method in interface jj2000.j2k.image.ImgData

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in interface jj2000.j2k.image.ImgData

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.input.ImgReader

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.input.ImgReader

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.Tiler

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.Tiler

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the total number of tiles in the image.

getNumTimepoints(int) - Method in class loci.formats.in.SlideBook6Reader

getNumUniqueStrings() - Method in class loci.poi.hssf.record.SSTRecord

getNumValues() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num values field for the Series record.

getNumXColumns(int) - Method in class loci.formats.in.SlideBook6Reader

getNumXTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the number of tiles along the tile grid in the horizontal direction.

getNumXTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNumXTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getNumYRows(int) - Method in class loci.formats.in.SlideBook6Reader

getNumYTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the number of tiles along the tile grid in the vertical direction.

getNumYTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNumYTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getNumZPlanes(int) - Method in class loci.formats.in.SlideBook6Reader

getObject(int) - Method in class loci.formats.cache.ByteArraySource

getObject(int[]) - Method in class loci.formats.cache.Cache

Gets the cached object at the given dimensional position.

getObject(int) - Method in class loci.formats.cache.CacheSource

getObject(int) - Method in interface loci.formats.cache.ICacheSource

Get the object corresponding to the given index.

getObject(int) - Method in class loci.formats.gui.BufferedImageSource

getObject(int) - Method in class loci.plugins.util.ImageProcessorSource

getObjectArrayMaxLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectArrayMinLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectClass(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectCount() - Method in class loci.formats.cache.CacheSource

getObjectCount() - Method in interface loci.formats.cache.ICacheSource

Get the total number of objects that this source can retrieve.

getObjectCount() - Method in class loci.formats.gui.BufferedImageSource

getObjectCount() - Method in class loci.plugins.util.ImageProcessorSource

getObjectDefaultValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectEnumerations(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectId() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the object id field for the CommonObjectData record.

getObjective(int) - Method in class ome.xml.model.Instrument

getObjective() - Method in class ome.xml.model.ObjectiveSettings

getObjectiveAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Objective.

getObjectiveAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Objective.

getObjectiveAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveCalibratedMagnification(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveCalibratedMagnification(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveCalibratedMagnification(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CalibratedMagnification property of Objective.

getObjectiveCalibratedMagnification(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveCorrection(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveCorrection(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveCorrection(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Correction property of Objective.

getObjectiveCorrection(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveCount(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveCount(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Objective elements.

getObjectiveCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveID(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Objective.

getObjectiveID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveImmersion(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveImmersion(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveImmersion(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Immersion property of Objective.

getObjectiveImmersion(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveIris(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveIris(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveIris(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Iris property of Objective.

getObjectiveIris(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveLens() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the objective lens string for this Frame.

getObjectiveLensNA() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the numerical aperture of the lens for this Frame.

getObjectiveLensNA(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveLensNA(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveLensNA(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LensNA property of Objective.

getObjectiveLensNA(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Objective.

getObjectiveLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveManufacturer() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the objective manufacturer from the objective lens string.

getObjectiveManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Objective.

getObjectiveManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveModel() - Method in class loci.formats.in.ND2Handler

getObjectiveModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Objective.

getObjectiveModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getObjectiveNominalMagnification(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveNominalMagnification(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveNominalMagnification(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the NominalMagnification property of Objective.

getObjectiveNominalMagnification(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Objective.

getObjectiveSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSettings() - Method in class ome.xml.model.Image

getObjectiveSettingsCorrectionCollar(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSettingsCorrectionCollar(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSettingsCorrectionCollar(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CorrectionCollar property of ObjectiveSettings.

getObjectiveSettingsCorrectionCollar(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSettingsID(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSettingsID(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSettingsID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of ObjectiveSettings.

getObjectiveSettingsID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSettingsMedium(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSettingsMedium(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSettingsMedium(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Medium property of ObjectiveSettings.

getObjectiveSettingsMedium(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSettingsRefractiveIndex(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSettingsRefractiveIndex(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSettingsRefractiveIndex(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RefractiveIndex property of ObjectiveSettings.

getObjectiveSettingsRefractiveIndex(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveWorkingDistance(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveWorkingDistance(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveWorkingDistance(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the WorkingDistance property of Objective.

getObjectiveWorkingDistance(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectMaxValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectMinValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether object protection is enabled or disabled

getObjectType() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the object type field for the CommonObjectData record.

getObjectValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getObjectValueType(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjRecord() - Method in class loci.poi.hssf.model.AbstractShape

getObjRecord() - Method in class loci.poi.hssf.model.LineShape

getObjRecord() - Method in class loci.poi.hssf.model.PictureShape

getObjRecord() - Method in class loci.poi.hssf.model.PolygonShape

getObjRecord() - Method in class loci.poi.hssf.model.SimpleFilledShape

getObjRecord() - Method in class loci.poi.hssf.model.TextboxShape

getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Gives the offset of the end of last packet containing ROI information

getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Gives the offset of the end of last packet containing ROI information

getOffset(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the cth offset for this Frame.

getOffset() - Method in class loci.poi.ddf.EscherBSERecord

File offset in the delay stream.

getOffset() - Method in class loci.poi.hpsf.Section

Returns the offset of the section in the stream.

getOffset() - Method in class loci.poi.poifs.storage.RawDataBlock

getOffset() - Method in class ome.units.unit.Unit

getOffset() - Method in class ome.xml.model.Detector

getOffset() - Method in class ome.xml.model.DetectorSettings

getOffsetOfContainer() - Method in class ome.jxr.ifd.IFDContainer

Returns the offset from the start of a data stream to the address where this IFD Container begins.

getOffsetOfFirstEntry() - Method in class ome.jxr.ifd.IFDContainer

Returns the offset from the start of a data stream to the address where this IFD Container begins, skipping IFD.ENTRIES_COUNT_SIZE bytes that hold the Entry count for this container.

getOMEMetadata(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Returns a OMEXMLMetadata object with the same contents as the given MetadataRetrieve, converting it if necessary.

getOMEMetadata(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl

getOMEMetadata() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getOMEXML(String) - Method in class loci.formats.out.OMETiffWriter

getOMEXML(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Extracts an OME-XML metadata string from the given metadata object, by converting to an OME-XML metadata object if necessary.

getOMEXML(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl

getOMEXML() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getOmeXmlMetadata() - Method in class loci.formats.in.FakeReader

getOmeXmlService() - Method in class loci.formats.in.FakeReader

getOMEXMLVersion(Object) - Method in interface loci.formats.services.OMEXMLService

Gets the schema version for the given OME-XML metadata or root object (e.g., "2007-06" or "2003-FC").

getOMEXMLVersion(Object) - Method in class loci.formats.services.OMEXMLServiceImpl

getOnDemandStripOffsets() - Method in class loci.formats.tiff.IFD

getOpenAllSeriesInfo() - Method in class loci.plugins.in.ImporterOptions

getOperator() - Method in class mdbtools.dbengine.sql.Condition

getOperator() - Method in class mdbtools.dbengine.sql.Equation

getOpticalZoom() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the optical zoom associated with this Frame.

getOptimalTileHeight() - Method in class loci.formats.DelegateReader

getOptimalTileHeight() - Method in class loci.formats.FormatReader

getOptimalTileHeight() - Method in interface loci.formats.IFormatReader

Returns the optimal sub-image height for use with openBytes.

getOptimalTileHeight() - Method in class loci.formats.ImageReader

getOptimalTileHeight() - Method in class loci.formats.in.AFIReader

getOptimalTileHeight() - Method in class loci.formats.in.AmiraReader

getOptimalTileHeight() - Method in class loci.formats.in.APLReader

getOptimalTileHeight() - Method in class loci.formats.in.BaseZeissReader

getOptimalTileHeight() - Method in class loci.formats.in.BDReader

getOptimalTileHeight() - Method in class loci.formats.in.BioRadReader

getOptimalTileHeight() - Method in class loci.formats.in.CellH5Reader

getOptimalTileHeight() - Method in class loci.formats.in.CellSensReader

getOptimalTileHeight() - Method in class loci.formats.in.EPSReader

getOptimalTileHeight() - Method in class loci.formats.in.FilePatternReader

getOptimalTileHeight() - Method in class loci.formats.in.FlexReader

getOptimalTileHeight() - Method in class loci.formats.in.FV1000Reader

getOptimalTileHeight() - Method in class loci.formats.in.HamamatsuVMSReader

getOptimalTileHeight() - Method in class loci.formats.in.ImageIOReader

getOptimalTileHeight() - Method in class loci.formats.in.ImarisHDFReader

getOptimalTileHeight() - Method in class loci.formats.in.InCellReader

getOptimalTileHeight() - Method in class loci.formats.in.IPWReader

getOptimalTileHeight() - Method in class loci.formats.in.L2DReader

getOptimalTileHeight() - Method in class loci.formats.in.LeicaReader

getOptimalTileHeight() - Method in class loci.formats.in.LeicaSCNReader

getOptimalTileHeight() - Method in class loci.formats.in.LIFReader

getOptimalTileHeight() - Method in class loci.formats.in.MIASReader

getOptimalTileHeight() - Method in class loci.formats.in.MicromanagerReader

getOptimalTileHeight() - Method in class loci.formats.in.MinimalTiffReader

getOptimalTileHeight() - Method in class loci.formats.in.ND2Reader

getOptimalTileHeight() - Method in class loci.formats.in.NDPIReader

getOptimalTileHeight() - Method in class loci.formats.in.NDPISReader

getOptimalTileHeight() - Method in class loci.formats.in.NRRDReader

getOptimalTileHeight() - Method in class loci.formats.in.OMETiffReader

getOptimalTileHeight() - Method in class loci.formats.in.OpenlabReader

getOptimalTileHeight() - Method in class loci.formats.in.PCIReader

getOptimalTileHeight() - Method in class loci.formats.in.PerkinElmerReader

getOptimalTileHeight() - Method in class loci.formats.in.PrairieReader

getOptimalTileHeight() - Method in class loci.formats.in.PyramidTiffReader

getOptimalTileHeight() - Method in class loci.formats.in.ScanrReader

getOptimalTileHeight() - Method in class loci.formats.in.SVSReader

getOptimalTileHeight() - Method in class loci.formats.in.TrestleReader

getOptimalTileHeight() - Method in class loci.formats.in.VisitechReader

getOptimalTileHeight() - Method in class loci.formats.in.ZeissLSMReader

getOptimalTileHeight() - Method in class loci.formats.ReaderWrapper

getOptimalTileWidth() - Method in class loci.formats.DelegateReader

getOptimalTileWidth() - Method in class loci.formats.FormatReader

getOptimalTileWidth() - Method in interface loci.formats.IFormatReader

Returns the optimal sub-image width for use with openBytes.

getOptimalTileWidth() - Method in class loci.formats.ImageReader

getOptimalTileWidth() - Method in class loci.formats.in.AFIReader

getOptimalTileWidth() - Method in class loci.formats.in.APLReader

getOptimalTileWidth() - Method in class loci.formats.in.BDReader

getOptimalTileWidth() - Method in class loci.formats.in.CellSensReader

getOptimalTileWidth() - Method in class loci.formats.in.EPSReader

getOptimalTileWidth() - Method in class loci.formats.in.FilePatternReader

getOptimalTileWidth() - Method in class loci.formats.in.FlexReader

getOptimalTileWidth() - Method in class loci.formats.in.FV1000Reader

getOptimalTileWidth() - Method in class loci.formats.in.HamamatsuVMSReader

getOptimalTileWidth() - Method in class loci.formats.in.ImarisHDFReader

getOptimalTileWidth() - Method in class loci.formats.in.InCellReader

getOptimalTileWidth() - Method in class loci.formats.in.IPWReader

getOptimalTileWidth() - Method in class loci.formats.in.L2DReader

getOptimalTileWidth() - Method in class loci.formats.in.LeicaReader

getOptimalTileWidth() - Method in class loci.formats.in.LeicaSCNReader

getOptimalTileWidth() - Method in class loci.formats.in.MIASReader

getOptimalTileWidth() - Method in class loci.formats.in.MicromanagerReader

getOptimalTileWidth() - Method in class loci.formats.in.MinimalTiffReader

getOptimalTileWidth() - Method in class loci.formats.in.NDPIReader

getOptimalTileWidth() - Method in class loci.formats.in.NDPISReader

getOptimalTileWidth() - Method in class loci.formats.in.OMETiffReader

getOptimalTileWidth() - Method in class loci.formats.in.PCIReader

getOptimalTileWidth() - Method in class loci.formats.in.PerkinElmerReader

getOptimalTileWidth() - Method in class loci.formats.in.PrairieReader

getOptimalTileWidth() - Method in class loci.formats.in.PyramidTiffReader

getOptimalTileWidth() - Method in class loci.formats.in.ScanrReader

getOptimalTileWidth() - Method in class loci.formats.in.SVSReader

getOptimalTileWidth() - Method in class loci.formats.in.TrestleReader

getOptimalTileWidth() - Method in class loci.formats.ReaderWrapper

getOptimalWidth() - Method in class loci.formats.in.ZeissLSMReader

getOptimize() - Method in class loci.poi.hssf.record.RowRecord

get whether to optimize or not (set to 0)

getOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the option with the given key.

getOption() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the option field for the CommonObjectData record.

getOptionFlag() - Method in class loci.poi.hssf.record.NameRecord

gets the option flag

getOptionFlags() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the option flags (unimportant for HSSF supported sheets)

getOptionFlags() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

get the (currently unimportant to HSSF) option flags

getOptionFlags() - Method in class loci.poi.hssf.record.RowRecord

gets the option bitmask.

getOptionFlags() - Method in class loci.poi.hssf.record.UnicodeString

get the option flags which among other things return if this is a 16-bit or 8 bit string

getOptions() - Method in class loci.plugins.in.ImportProcess

getOptions() - Method in class loci.poi.ddf.EscherOptRecord

Automatically recalculate the correct option

getOptions() - Method in class loci.poi.ddf.EscherRecord.EscherRecordHeader

getOptions() - Method in class loci.poi.ddf.EscherRecord

getOptions() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the options field for the AxisOptions record.

getOptions() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the options field for the CategorySeriesAxis record.

getOptions() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the options bitfield - use the bitsetters instead

getOptions() - Method in class loci.poi.hssf.record.DatRecord

Get the options field for the Dat record.

getOptions() - Method in class loci.poi.hssf.record.formula.AttrPtg

getOptions() - Method in class loci.poi.hssf.record.FormulaRecord

get the option flags

getOptions() - Method in class loci.poi.hssf.record.FrameRecord

Get the options field for the Frame record.

getOptions() - Method in class loci.poi.hssf.record.LegendRecord

Get the options field for the Legend record.

getOptions() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the options field for the LinkedData record.

getOptions() - Method in class loci.poi.hssf.record.PrintSetupRecord

getOptions() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the options field for the TextObjectBase record.

getOptions() - Method in class loci.poi.hssf.record.TickRecord

Get the options field for the Tick record.

getOptions() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the options field for the ValueRange record.

getOptions() - Method in class loci.poi.hssf.record.WindowOneRecord

get the options bitmask (see bit setters)

getOptions() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the options bitmask or just use the bit setters.

getOptions() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the bit flags for the options.

getOptions1() - Method in class loci.poi.hssf.record.TextRecord

Get the options1 field for the Text record.

getOptions2() - Method in class loci.poi.hssf.record.TextRecord

Get the options2 field for the Text record.

getOrder() - Method in class loci.common.ByteArrayHandle

getOrder() - Method in class loci.common.FileHandle

getOrder() - Method in interface loci.common.IRandomAccess

Returns the current order of the stream.

getOrder() - Method in class loci.common.NIOFileHandle

getOrder() - Method in class loci.common.StreamHandle

getOrder() - Method in class loci.formats.cache.CacheStrategy

getOrder() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the order in which objects should be loaded along each axis.

getOrderBy(int) - Method in class mdbtools.dbengine.sql.Select

getOrderByCount() - Method in class mdbtools.dbengine.sql.Select

getOrgX() - Method in interface loci.formats.services.WlzService

Gets column origin.

getOrgX() - Method in class loci.formats.services.WlzServiceImpl

getOrgY() - Method in interface loci.formats.services.WlzService

Gets line origin.

getOrgY() - Method in class loci.formats.services.WlzServiceImpl

getOrgZ() - Method in interface loci.formats.services.WlzService

Gets plane origin.

getOrgZ() - Method in class loci.formats.services.WlzServiceImpl

getOrigBitDepth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getOriginalBitDepth(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the original bitdepth of the specified component.

getOriginalIndex(int) - Method in class loci.formats.ChannelMerger

Returns the image number in the original dataset that corresponds to the given image number.

getOriginalIndex(int) - Method in class loci.formats.ChannelSeparator

Returns the image number in the original dataset that corresponds to the given image number.

getOriginalMetadata(OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService

Parse any OriginalMetadata annotations from the given OME-XML metadata object and store them in a Hashtable.

getOriginalMetadata(OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl

getOriginalMetadata() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.METADATA.

getOriginalOrder() - Method in class loci.formats.AxisGuesser

Gets the original dimension order.

getOriginalOrder() - Method in class loci.formats.FileStitcher.ExternalSeries

getOSVersion() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "OS version" field.

getOSVersion() - Method in class loci.poi.hpsf.SpecialPropertySet

getOutlineLevel() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the outline level for the cells

getOutlineLevel() - Method in class loci.poi.hssf.record.RowRecord

get the outline level of this row

getOutlineStyleLevel() - Method in class loci.poi.hssf.record.StyleRecord

get the row or column level of the style (if builtin 1||2)

getPackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

For the case of binary data (isBinary() returns true), return the binary data as a packed byte array.

getPackedPktHead(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the packed packet headers for a given tile.

getPacketPerTilePart() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packetPerTilePart

getPackPacketHeaderInMain() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packPacketHeaderInMain

getPackPacketHeaderInTile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packPacketHeaderInTile

getPageBreakZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord

zoom magification in page break view

getPageCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the page count or 0 if the SummaryInformation does not contain a page count.

getPaged() - Method in class loci.poi.hssf.record.WindowTwoRecord

is the sheet currently displayed in the window

getPageName() - Method in class ome.jxr.ifd.IFDMetadata

getPageNumber() - Method in class ome.jxr.ifd.IFDMetadata

getPageStart() - Method in class loci.poi.hssf.record.PrintSetupRecord

getPageStart() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the page start.

getPaint() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getPaint() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getPairs() - Method in class ome.xml.model.MapPairs

getPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette options bitmask (see the individual bit getter methods that reference this one)

getPalettepos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getPane() - Method in class loci.poi.hssf.record.SelectionRecord

get which window pane this is for

getPaneInformation() - Method in class loci.poi.hssf.model.Sheet

Returns the information regarding the currently configured pane (split or freeze).

getPaneInformation() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the information regarding the currently configured pane (split or freeze).

getPaperSize() - Method in class loci.poi.hssf.record.PrintSetupRecord

getPaperSize() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the paper size.

getParameterClass(int) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the parameters that are used in this class.

getParameterInfo() - Static method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.roi.ROIDeScaler

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT

Returns the parameters that are used in this class and implementing classes.

getParCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the par count or 0 if the DocumentSummaryInformation does not contain a par count.

getParent(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

getParent(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

getParent() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the parent of this subband.

getParent() - Method in class jj2000.j2k.wavelet.Subband

Returns the parent of this subband.

getParent() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the parent of this subband.

getParent() - Method in class loci.common.Location

Returns the name of this file's parent directory, i.e.

getParent(int) - Method in class loci.formats.in.LeicaSCNReader

getParent() - Method in class loci.poi.hssf.usermodel.HSSFShape

Gets the parent shape.

getParent() - Method in interface loci.poi.poifs.filesystem.Entry

get this Entry's parent (the DirectoryEntry that owns this Entry).

getParent() - Method in class loci.poi.poifs.filesystem.EntryNode

get this Entry's parent (the DocumentEntry that owns this Entry).

getParent() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

Returns the path's parent or null if this path is the root path.

getParent(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

get a node's parent.

getParent(int) - Method in class loci.poi.util.BinaryTree.Node

get the parent node

getParentFile() - Method in class loci.common.Location

getParentIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

for cell XF types this is the parent style (usually 0/normal).

getParentParser() - Method in class ome.jxr.parser.Parser

getParentTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the parent TIFFTag of this directory if one has been defined or null otherwise.

getParsedExpression() - Method in class loci.poi.hssf.record.FormulaRecord

get the stack as a list

getParsedExpressionTokens(RecordInputStream) - Method in class loci.poi.hssf.record.SharedFormulaRecord

getParsingEnabled() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Gets parsingEnabled

getPassword() - Method in class loci.poi.hssf.model.Sheet

Returns the PasswordRecord.

getPassword() - Method in class loci.poi.hssf.record.FileSharingRecord

getPassword() - Method in class loci.poi.hssf.record.PasswordRecord

get the password

getPassword() - Method in class loci.poi.hssf.record.PasswordRev4Record

get the password

getPassword() - Method in class loci.poi.hssf.usermodel.HSSFSheet

getPath() - Method in class loci.common.Location

getPath(PrairieMetadata.PFile) - Method in class loci.formats.in.PrairieReader

Gets the absolute path to the filename of the given PrairieMetadata.PFile.

getPath() - Method in class loci.plugins.util.BFVirtualStack

getPath() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

getPath() - Method in class loci.poi.poifs.filesystem.DirectoryNode

getPath() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getPatriarch() - Method in class loci.poi.hssf.record.EscherAggregate

getPattern() - Method in class loci.formats.FilePattern

Gets the file pattern string.

getPattern() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the pattern field for the AreaFormat record.

getPhotometricInterpretation() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the current value that will be written to the Photometricinterpretation tag.

getPhotometricInterpretation() - Method in class loci.formats.tiff.IFD

Retrieves the image's photometric interpretation (TIFF tag PhotometricInterpretation) from this IFD.

getPhysicalNumberOfCells() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getPhysicalNumberOfCells() - Method in class loci.poi.hssf.usermodel.HSSFRow

gets the number of defined cells (NOT number of cells in the actual row!).

getPhysicalNumberOfRows() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getPhysicalNumberOfRows() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the number of phsyically defined rows (NOT the number of rows in the sheet)

getPhysicalSize(Double, String) - Static method in class loci.formats.FormatTools

getPhysicalSizes() - Method in class loci.formats.in.SVSReader

getPhysicalSizeX(Double) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in X into a length in microns

getPhysicalSizeX(Double, String) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in X into a length of the given unit.

getPhysicalSizeX(Double, Unit<Length>) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in X into a length of the given unit.

getPhysicalSizeX() - Method in class loci.tests.testng.Configuration

getPhysicalSizeX() - Method in class ome.xml.model.Pixels

getPhysicalSizeXUnitXsdDefault() - Static method in class ome.xml.model.Pixels

getPhysicalSizeY(Double) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Y into a length in microns

getPhysicalSizeY(Double, String) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Y into a length of the given unit.

getPhysicalSizeY(Double, Unit<Length>) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Y into a length of the given unit.

getPhysicalSizeY() - Method in class loci.tests.testng.Configuration

getPhysicalSizeY() - Method in class ome.xml.model.Pixels

getPhysicalSizeYUnitXsdDefault() - Static method in class ome.xml.model.Pixels

getPhysicalSizeZ(Double) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Z into a length in microns

getPhysicalSizeZ(Double, String) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Z into a length of the given unit.

getPhysicalSizeZ(Double, Unit<Length>) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Z into a length of the given unit.

getPhysicalSizeZ() - Method in class loci.tests.testng.Configuration

getPhysicalSizeZ() - Method in class ome.xml.model.Pixels

getPhysicalSizeZUnitXsdDefault() - Static method in class ome.xml.model.Pixels

getPictDimensions(byte[]) - Method in class loci.formats.gui.LegacyQTTools

Gets width and height for the given PICT bytes.

getPicturedata() - Method in class loci.poi.ddf.EscherBlipRecord

getPictureIndex() - Method in class loci.poi.hssf.usermodel.HSSFPicture

getPIDString(long) - Method in class loci.poi.hpsf.Section

Returns the PID string associated with a property ID.

getPIDString(byte[], long) - Static method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the property ID string that is associated with a given property ID in a section format ID's namespace.

getPinholeSize() - Method in class loci.formats.in.ND2Handler

getPinholeSize() - Method in class ome.xml.model.Channel

getPinholeSizeUnitXsdDefault() - Static method in class ome.xml.model.Channel

getPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

getPixel(int, int, int[]) - Method in class loci.plugins.util.RecordedImageProcessor

getPixelBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(WritableRaster, boolean) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(WritableRaster, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelCount() - Method in class loci.plugins.util.RecordedImageProcessor

getPixelInterpolated(double, double) - Method in class loci.plugins.util.RecordedImageProcessor

getPixels(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Gets the image's pixel data as arrays of primitives, one per channel.

getPixels(BufferedImage, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets the image's pixel data as arrays of primitives, one per channel.

getPixels(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Gets the raster's pixel data as arrays of primitives, one per channel.

getPixels(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets the raster's pixel data as arrays of primitives, one per channel.

getPixels() - Method in class loci.plugins.util.RecordedImageProcessor

getPixels() - Method in class ome.xml.model.BinData

getPixels() - Method in class ome.xml.model.Channel

getPixels() - Method in class ome.xml.model.Image

getPixels() - Method in class ome.xml.model.Plane

getPixels() - Method in class ome.xml.model.TiffData

getPixelsBigEndian(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsBigEndian(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsBigEndian(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the BigEndian property of Pixels.

getPixelsBigEndian(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsBinDataBigEndian(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsBinDataBigEndian(int, int) - Method in class ome.xml.meta.DummyMetadata

getPixelsBinDataBigEndian(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the BigEndian property of Pixels.

getPixelsBinDataBigEndian(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsBinDataCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsBinDataCount(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsBinDataCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of BinData elements in Pixels.

getPixelsBinDataCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsCopy() - Method in class loci.plugins.util.RecordedImageProcessor

getPixelsDimensionOrder(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsDimensionOrder(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsDimensionOrder(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DimensionOrder property of Pixels.

getPixelsDimensionOrder(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsID(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsID(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Pixels.

getPixelsID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsInterleaved(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsInterleaved(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsInterleaved(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Interleaved property of Pixels.

getPixelsInterleaved(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelSize(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the pixel size (in bytes) of the given pixel format.

getPixelSizeX() - Method in class loci.formats.in.MetamorphHandler

getPixelSizeX() - Method in class loci.formats.in.ND2Handler

getPixelSizeY() - Method in class loci.formats.in.MetamorphHandler

getPixelSizeY() - Method in class loci.formats.in.ND2Handler

getPixelSizeZ() - Method in class loci.formats.in.ND2Handler

getPixelsPerLine() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the pixels per line for this Frame.

getPixelsPhysicalSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsPhysicalSizeX(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsPhysicalSizeX(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsPhysicalSizeX(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PhysicalSizeX property of Pixels.

getPixelsPhysicalSizeX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsPhysicalSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsPhysicalSizeY(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsPhysicalSizeY(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsPhysicalSizeY(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PhysicalSizeY property of Pixels.

getPixelsPhysicalSizeY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsPhysicalSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsPhysicalSizeZ(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsPhysicalSizeZ(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsPhysicalSizeZ(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PhysicalSizeZ property of Pixels.

getPixelsPhysicalSizeZ(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSignificantBits(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSignificantBits(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSignificantBits(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SignificantBits property of Pixels.

getPixelsSignificantBits(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeC(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeC(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeC(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeC property of Pixels.

getPixelsSizeC(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeT(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeT(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeT(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeT property of Pixels.

getPixelsSizeT(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeX(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeX(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeX(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeX property of Pixels.

getPixelsSizeX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeY(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeY(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeY(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeY property of Pixels.

getPixelsSizeY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeZ(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeZ(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeZ(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeZ property of Pixels.

getPixelsSizeZ(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsTimeIncrement(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsTimeIncrement(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsTimeIncrement(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsTimeIncrement(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TimeIncrement property of Pixels.

getPixelsTimeIncrement(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelString(int) - Method in class loci.formats.in.DeltavisionReader

Get a descriptive string representing the pixel type.

getPixelsType(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsType(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Pixels.

getPixelsType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelType() - Method in class loci.formats.FileStitcher

getPixelType() - Method in class loci.formats.FormatReader

getPixelType(String) - Method in class loci.formats.FormatReader

Retrieves an PixelType enumeration value for the given String.

getPixelType(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Gets the pixel type of the given image.

getPixelType() - Method in interface loci.formats.IFormatReader

Gets the pixel type.

getPixelType() - Method in class loci.formats.ImageReader

getPixelType(int) - Method in class loci.formats.in.DeltavisionReader

Get the OME pixel type from the pixel type stored in the file.

getPixelType() - Method in class loci.formats.in.FilePatternReader

getPixelType(int) - Method in class loci.formats.in.OBFReader

getPixelType() - Method in class loci.formats.ReaderWrapper

getPixelType() - Method in interface loci.formats.services.WlzService

Gets the image pixel type.

getPixelType() - Method in class loci.formats.services.WlzServiceImpl

getPixelType() - Method in class loci.formats.tiff.IFD

Retrieves the image's pixel type based on the BitsPerSample tag.

getPixelType(String[]) - Method in class loci.plugins.macro.LociFunctions

getPixelType() - Method in class loci.tests.testng.Configuration

getPixelType() - Method in enum ome.jxr.ifd.PixelFormat

getPixelTypeFromString(String) - Method in class loci.formats.in.LiFlimReader

getPixelTypes() - Method in class loci.formats.FormatWriter

getPixelTypes(String) - Method in class loci.formats.FormatWriter

getPixelTypes() - Method in interface loci.formats.IFormatWriter

Gets the supported pixel types.

getPixelTypes(String) - Method in interface loci.formats.IFormatWriter

Gets the supported pixel types for the given codec.

getPixelTypes() - Method in class loci.formats.ImageWriter

getPixelTypes(String) - Method in class loci.formats.ImageWriter

getPixelTypes(String) - Method in class loci.formats.out.APNGWriter

getPixelTypes(String) - Method in class loci.formats.out.AVIWriter

getPixelTypes(String) - Method in class loci.formats.out.CellH5Writer

getPixelTypes(String) - Method in class loci.formats.out.EPSWriter

getPixelTypes(String) - Method in class loci.formats.out.ICSWriter

getPixelTypes(String) - Method in class loci.formats.out.ImageIOWriter

getPixelTypes(String) - Method in class loci.formats.out.JavaWriter

getPixelTypes(String) - Method in class loci.formats.out.JPEG2000Writer

Overridden to return the formats supported by the writer.

getPixelTypes(String) - Method in class loci.formats.out.JPEGWriter

getPixelTypes(String) - Method in class loci.formats.out.OMEXMLWriter

getPixelTypes(String) - Method in class loci.formats.out.QTWriter

getPixelTypes(String) - Method in class loci.formats.out.TiffWriter

getPixelTypes(String) - Method in class loci.formats.out.V3DrawWriter

getPixelTypes(String) - Method in class loci.formats.out.WlzWriter

getPixelTypes() - Method in class loci.formats.WriterWrapper

getPixelTypes(String) - Method in class loci.formats.WriterWrapper

getPixelTypeString(int) - Static method in class loci.formats.FormatTools

Takes a pixel type value and gets a corresponding string representation.

getPixelValue(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

getPlanarConfiguration() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getPlanarConfiguration() - Method in class loci.formats.tiff.IFD

Retrieves the image's planar configuration (TIFF tag PlanarConfiguration) from this IFD.

getPlane(int, int) - Method in class loci.formats.in.FV1000Reader

getPlane(int[]) - Method in class loci.formats.in.OpenlabReader

getPlane(int, int, int) - Method in class loci.tests.testng.ConversionTest

getPlane(int) - Method in class ome.xml.model.Pixels

getPlaneAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Plane.

getPlaneAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Plane.

getPlaneAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneByteOffset(int, int, int) - Method in class loci.formats.in.DeltavisionReader

Given any specific Z, W, and T of a plane, determine the absolute byte offset of the plane in the file.

getPlaneCount() - Method in class loci.formats.FormatWriter

Retrieve the total number of planes in the current series.

getPlaneCount(int) - Method in class loci.formats.FormatWriter

Retrieve the total number of planes in given series.

getPlaneCount() - Method in class loci.formats.out.CellH5Writer

getPlaneCount() - Method in class loci.formats.out.TiffWriter

getPlaneCount(int) - Method in class loci.formats.out.TiffWriter

getPlaneCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneCount(int) - Method in class ome.xml.meta.DummyMetadata

getPlaneCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Plane elements.

getPlaneCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneCount() - Method in class ome.xml.model.TiffData

getPlaneDeltaT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneDeltaT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneDeltaT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DeltaT property of Plane.

getPlaneDeltaT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneExposureTime(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneExposureTime(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneExposureTime(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExposureTime property of Plane.

getPlaneExposureTime(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneHashSHA1(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneHashSHA1(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneHashSHA1(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the HashSHA1 property of Plane.

getPlaneHashSHA1(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneIndex(IFormatReader, int) - Static method in class loci.plugins.macro.LociFunctions

Finds the Plane index corresponding to the given image plane number.

getPlaneMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the maximum pixel value for the specified plane.

getPlaneMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the minimum pixel value for the specified plane.

getPlanePositionX(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlanePositionX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlanePositionX(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlanePositionX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PositionX property of Plane.

getPlanePositionX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlanePositionY(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlanePositionY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlanePositionY(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlanePositionY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PositionY property of Plane.

getPlanePositionY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlanePositionZ(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlanePositionZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlanePositionZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlanePositionZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PositionZ property of Plane.

getPlanePositionZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlanes() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlaneSize(IFormatReader) - Static method in class loci.formats.FormatTools

Returns the size in bytes of a single plane.

getPlaneSize(IFormatReader, int, int) - Static method in class loci.formats.FormatTools

Returns the size in bytes of a w * h tile.

getPlanesToLoad(int) - Method in class loci.plugins.in.ImagePlusReader

getPlaneTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Plane.

getPlaneTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Plane.

getPlaneTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Plane.

getPlaneTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneTimingDeltaT(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlaneTimingExposureTime(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlate(int) - Method in class ome.xml.model.OME

getPlate() - Method in class ome.xml.model.PlateAcquisition

getPlate() - Method in class ome.xml.model.Well

getPlateAcquisition(int) - Method in class ome.xml.model.Plate

getPlateAcquisitionAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of PlateAcquisition.

getPlateAcquisitionAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in PlateAcquisition.

getPlateAcquisitionAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionCount(int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of PlateAcquisition elements.

getPlateAcquisitionCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionDescription(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of PlateAcquisition.

getPlateAcquisitionDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionEndTime(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionEndTime(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionEndTime(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the EndTime property of PlateAcquisition.

getPlateAcquisitionEndTime(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionID(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of PlateAcquisition.

getPlateAcquisitionID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionMaximumFieldCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionMaximumFieldCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionMaximumFieldCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MaximumFieldCount property of PlateAcquisition.

getPlateAcquisitionMaximumFieldCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionName(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionName(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of PlateAcquisition.

getPlateAcquisitionName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionStartTime(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionStartTime(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionStartTime(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StartTime property of PlateAcquisition.

getPlateAcquisitionStartTime(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionWellSampleRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionWellSampleRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionWellSampleRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the WellSampleRef property of PlateAcquisition.

getPlateAcquisitionWellSampleRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Plate.

getPlateAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getPlateAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Plate.

getPlateAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateColumnNamingConvention(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateColumnNamingConvention(int) - Method in class ome.xml.meta.DummyMetadata

getPlateColumnNamingConvention(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ColumnNamingConvention property of Plate.

getPlateColumnNamingConvention(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateColumns() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateColumns(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateColumns(int) - Method in class ome.xml.meta.DummyMetadata

getPlateColumns(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Columns property of Plate.

getPlateColumns(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateCount() - Method in class ome.xml.meta.AggregateMetadata

getPlateCount() - Method in class ome.xml.meta.DummyMetadata

getPlateCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Plate elements.

getPlateCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateDescription() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateDescription(int) - Method in class ome.xml.meta.DummyMetadata

getPlateDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Plate.

getPlateDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateExternalIdentifier(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateExternalIdentifier(int) - Method in class ome.xml.meta.DummyMetadata

getPlateExternalIdentifier(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExternalIdentifier property of Plate.

getPlateExternalIdentifier(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateFieldIndex(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateFieldIndex(int) - Method in class ome.xml.meta.DummyMetadata

getPlateFieldIndex(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FieldIndex property of Plate.

getPlateFieldIndex(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateID(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateID(int) - Method in class ome.xml.meta.DummyMetadata

getPlateID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Plate.

getPlateID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateIdentifier() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateName(String) - Method in class loci.formats.in.CellomicsReader

getPlateName() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateName(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateName(int) - Method in class ome.xml.meta.DummyMetadata

getPlateName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Plate.

getPlateName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getPlateRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of PlateRef elements.

getPlateRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateRowNamingConvention(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateRowNamingConvention(int) - Method in class ome.xml.meta.DummyMetadata

getPlateRowNamingConvention(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RowNamingConvention property of Plate.

getPlateRowNamingConvention(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateRows() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateRows(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateRows(int) - Method in class ome.xml.meta.DummyMetadata

getPlateRows(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Rows property of Plate.

getPlateRows(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateStatus(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateStatus(int) - Method in class ome.xml.meta.DummyMetadata

getPlateStatus(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Status property of Plate.

getPlateStatus(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateWellOriginX(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateWellOriginX(int) - Method in class ome.xml.meta.DummyMetadata

getPlateWellOriginX(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the WellOriginX property of Plate.

getPlateWellOriginX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateWellOriginY(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateWellOriginY(int) - Method in class ome.xml.meta.DummyMetadata

getPlateWellOriginY(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the WellOriginY property of Plate.

getPlateWellOriginY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPockelCell() - Method in class ome.xml.model.Laser

getPockelCellSetting() - Method in class ome.xml.model.Channel

getPointAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPointAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Point.

getPointAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Point.

getPointFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Point.

getPointFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Point.

getPointFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Point.

getPointFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Point.

getPointFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointID(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Point.

getPointID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Point.

getPointLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Point.

getPointLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointNumber() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the point number field for the DataFormat record.

getPoints() - Method in enum loci.formats.in.BaseZeissReader.FeatureType

getPoints() - Method in class ome.xml.model.Polygon

getPoints() - Method in class ome.xml.model.Polyline

getPointStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Point.

getPointStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Point.

getPointStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Point.

getPointStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointText(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Point.

getPointText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Point.

getPointTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Point.

getPointTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Point.

getPointTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Point.

getPointTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Point.

getPointVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointX(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Point.

getPointX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointY(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Point.

getPointY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Polygon.

getPolygonAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Polygon.

getPolygonFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Polygon.

getPolygonFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Polygon.

getPolygonFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Polygon.

getPolygonFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Polygon.

getPolygonFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonID(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Polygon.

getPolygonID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Polygon.

getPolygonLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Polygon.

getPolygonLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonPoints(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonPoints(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonPoints(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Points property of Polygon.

getPolygonPoints(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Polygon.

getPolygonStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Polygon.

getPolygonStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Polygon.

getPolygonStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonText(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Polygon.

getPolygonText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Polygon.

getPolygonTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Polygon.

getPolygonTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Polygon.

getPolygonTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Polygon.

getPolygonTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Polygon.

getPolygonVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Polyline.

getPolylineAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Polyline.

getPolylineFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Polyline.

getPolylineFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Polyline.

getPolylineFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Polyline.

getPolylineFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Polyline.

getPolylineFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineID(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Polyline.

getPolylineID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Polyline.

getPolylineLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Polyline.

getPolylineLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineMarkerEnd(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineMarkerEnd(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineMarkerEnd(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MarkerEnd property of Polyline.

getPolylineMarkerEnd(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineMarkerStart(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineMarkerStart(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineMarkerStart(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MarkerStart property of Polyline.

getPolylineMarkerStart(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylinePoints(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylinePoints(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylinePoints(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Points property of Polyline.

getPolylinePoints(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Polyline.

getPolylineStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Polyline.

getPolylineStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Polyline.

getPolylineStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineText(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Polyline.

getPolylineText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Polyline.

getPolylineTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Polyline.

getPolylineTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Polyline.

getPolylineTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Polyline.

getPolylineTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Polyline.

getPolylineVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPos() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Returns the stream position clamped to a maximum of Integer.MAX_VALUE.

getPos() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the current offset in the file

getPos() - Method in interface jj2000.j2k.io.RandomAccessIO

Returns the current position in the stream, which is the position from where the next byte of data would be read.

getPos() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the current position in the stream, which is the position from where the next byte of data would be read.

getPos(int) - Method in class loci.formats.in.FluoviewReader

getPos() - Method in class loci.poi.hssf.record.RecordInputStream

getPosition(int) - Method in class loci.formats.in.ZeissLSMReader

getPositionFromFile(String) - Method in class loci.formats.in.MIASReader

Returns an array of length 5 that contains the well, time point, Z and channel indices corresponding to the given analysis file.

getPositionNames() - Method in class loci.formats.in.ND2Handler

getPositionOfBof() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the offset in bytes of the Beginning of File Marker within the HSSF Stream part of the POIFS file

getPositionX() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the X stage position associated with this Frame.

getPositionX(int) - Method in class loci.tests.testng.Configuration

getPositionX() - Method in class ome.xml.model.Plane

getPositionX() - Method in class ome.xml.model.WellSample

getPositionXUnit(int) - Method in class loci.tests.testng.Configuration

getPositionXUnitXsdDefault() - Static method in class ome.xml.model.Plane

getPositionXUnitXsdDefault() - Static method in class ome.xml.model.WellSample

getPositionY() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the Y stage position associated with this Frame.

getPositionY(int) - Method in class loci.tests.testng.Configuration

getPositionY() - Method in class ome.xml.model.Plane

getPositionY() - Method in class ome.xml.model.WellSample

getPositionYUnit(int) - Method in class loci.tests.testng.Configuration

getPositionYUnitXsdDefault() - Static method in class ome.xml.model.Plane

getPositionYUnitXsdDefault() - Static method in class ome.xml.model.WellSample

getPositionZ() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the Z stage position associated with this Frame.

getPositionZ(int) - Method in class loci.tests.testng.Configuration

getPositionZ() - Method in class ome.xml.model.Plane

getPositionZUnit(int) - Method in class loci.tests.testng.Configuration

getPositionZUnitXsdDefault() - Static method in class ome.xml.model.Plane

getPossible(String) - Method in class loci.plugins.prefs.OptionsList

Gets the possible values for the string option with the given key.

getPossible() - Method in class loci.plugins.prefs.StringOption

Gets the list of possible values.

getPossibleDomains(String) - Method in class loci.formats.FormatReader

getPossibleDomains(String) - Method in interface loci.formats.IFormatReader

Returns a list of scientific domains in which this format is used.

getPossibleDomains(String) - Method in class loci.formats.ImageReader

getPossibleDomains(String) - Method in class loci.formats.in.FilePatternReader

getPossibleDomains(String) - Method in class loci.formats.ReaderWrapper

getPossiblePositions() - Method in class loci.formats.cache.CacheStrategy

Gets positions to consider for possible inclusion in the cache, assuming a current position at the origin (0).

getPossiblePositions() - Method in class loci.formats.cache.CrosshairStrategy

getPossiblePositions() - Method in class loci.formats.cache.RectangleStrategy

getPower() - Method in class ome.xml.model.LightSource

getPowers() - Method in class loci.formats.in.ND2Handler

getPowerUnitXsdDefault() - Static method in class ome.xml.model.LightSource

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the precinct partition width for the specified tile-component and (tile-component) resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the precinct partition width for the specified tile-component and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Returns the precinct partition width for the specified component, resolution level and tile.

getPPX(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the width of a packet for the specified tile- component and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the precinct partition width for the specified component, tile and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec

Returns the precinct partition width in component 'n' and tile 't' at resolution level 'rl'.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the precinct partition height for the specified tile-component and (tile-component) resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the precinct partition height for the specified component, tile and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Returns the precinct partition height for the specified component, resolution level and tile.

getPPY(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the height of a packet for the specified tile- component and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the precinct partition height for the specified component, tile and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec

Returns the precinct partition height in component 'n' and tile 't' at resolution level 'rl'.

getPrecedence() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns Precedence.

getPrecinctPartition() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets precinctPartition

getPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Get PrecInfo instance of the specified resolution level, component and precinct.

getPrecInfo(int, int, int, int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns information about a given precinct

getPref(String, Class<? extends IFormatReader>, boolean) - Static method in class loci.plugins.util.LociPrefs

getPreferredCompressionType(ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getPreferredCompressionType(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getPreferredEncoding() - Static method in class loci.poi.util.StringUtil

getPreferredSize() - Method in class loci.formats.gui.CacheIndicator

getPreferredSize() - Method in class loci.formats.gui.PreviewPane

getPreferredSize() - Method in class loci.poi.hssf.usermodel.HSSFPicture

Calculate the preferred size for this picture.

getPreferredSize() - Method in class loci.tests.ImageTester

getPrefferedSpatialTransformation() - Method in class ome.jxr.ifd.IFDMetadata

getPrefix() - Method in class loci.formats.FilePattern

Gets the pattern's text string before any numerical ranges.

getPrefix(int) - Method in class loci.formats.FilePattern

Gets the pattern's text string before the given numerical block.

getPrefix(String) - Method in class loci.formats.in.ZeissTIFFReader

getPrefixes() - Method in class loci.formats.FilePattern

Gets the pattern's text string before each numerical block.

getPreOffset() - Method in class loci.poi.hssf.model.Sheet

get the preoffset when using DBCELL records (currently unused) - this is the position of this sheet within the whole file.

getPresentationFormat() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the presentation format (or null).

getPreviousChild() - Method in interface loci.poi.poifs.property.Child

Get the previous Child, if any

getPreviousChild() - Method in class loci.poi.poifs.property.Property

Get the previous Child, if any

getPreviousChildIndex() - Method in class loci.poi.poifs.property.Property

get the previous sibling

getPreviousSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getPrintArea(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Retrieves the reference for the printarea of the specified sheet, the sheet name is appended to the reference even if it was not specified.

getPrintGridlines() - Method in class loci.poi.hssf.model.Sheet

Returns the PrintGridlinesRecord.

getPrintGridlines() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

get whether or not to print the gridlines (and make your spreadsheet ugly)

getPrintHeaders() - Method in class loci.poi.hssf.record.PrintHeadersRecord

get whether to print the headers - y/n

getPrintSetup() - Method in class loci.poi.hssf.model.Sheet

Returns the PrintSetupRecord.

getPrintSetup() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the print setup object.

getPriorities() - Method in class loci.formats.cache.CacheStrategy

getPriorities() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the priority for caching each axis.

getProcessor(int) - Method in class loci.plugins.util.BFVirtualStack

getProgressionName() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets progressionType

getProgressionType() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets progressionType.

getProgressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets progressionType

getProgressMaximum() - Method in class loci.common.StatusEvent

Gets progress maximum.

getProgressValue() - Method in class loci.common.StatusEvent

Gets progress value.

getProgressWatch() - Static method in class jj2000.j2k.util.FacilityManager

Returns the ProgressWatch instance registered with the current thread (the thread that calls this method).

getProject(int) - Method in class ome.xml.model.OME

getProjectAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getProjectAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getProjectAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Project.

getProjectAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getProjectAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Project.

getProjectAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectCount() - Method in class ome.xml.meta.AggregateMetadata

getProjectCount() - Method in class ome.xml.meta.DummyMetadata

getProjectCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Project elements.

getProjectCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectDatasetRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getProjectDatasetRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getProjectDatasetRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DatasetRef property of Project.

getProjectDatasetRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectDescription(int) - Method in class ome.xml.meta.DummyMetadata

getProjectDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Project.

getProjectDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectExperimenterGroupRef(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectExperimenterGroupRef(int) - Method in class ome.xml.meta.DummyMetadata

getProjectExperimenterGroupRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterGroupRef property of Project.

getProjectExperimenterGroupRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata

getProjectExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of Project.

getProjectExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectID(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectID(int) - Method in class ome.xml.meta.DummyMetadata

getProjectID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Project.

getProjectID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectName(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectName(int) - Method in class ome.xml.meta.DummyMetadata

getProjectName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Project.

getProjectName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProperties() - Method in class loci.poi.hpsf.MutableSection

Gets this section's properties.

getProperties() - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the Property array contained in this property set.

getProperties() - Method in class loci.poi.hpsf.Section

Returns this section's properties.

getProperties() - Method in class loci.poi.hpsf.SpecialPropertySet

getPropertiesSize() - Method in class loci.poi.ddf.EscherOptRecord

getProperty(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Gets a property from the property set of this image.

getProperty(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getProperty(long) - Method in class loci.poi.hpsf.MutableSection

Gets a property.

getProperty(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of the property with the specified ID.

getProperty(long) - Method in class loci.poi.hpsf.Section

Returns the value of the property with the specified ID.

getProperty(int) - Method in class loci.poi.hpsf.SpecialPropertySet

getProperty() - Method in class loci.poi.poifs.filesystem.EntryNode

grant access to the property

getProperty(String) - Method in class loci.tests.testng.FormatReaderTestFactory

Safely return a system property by key excluding default Ant values

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of a boolean property with the specified ID.

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.Section

Returns the value of the boolean property with the specified ID.

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet

getPropertyCount() - Method in class loci.poi.hpsf.MutableSection

Overwrites the super class' method to cope with a redundancy: the property count is maintained in a separate member variable, but shouldn't.

getPropertyCount() - Method in class loci.poi.hpsf.Section

Returns the number of properties in this section.

getPropertyIntValue(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of the numeric property with the specified ID.

getPropertyIntValue(long) - Method in class loci.poi.hpsf.Section

Returns the value of the numeric property with the specified ID.

getPropertyIntValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet

getPropertyName(short) - Static method in class loci.poi.ddf.EscherProperties

getPropertyNames() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns a list of the properties recognized by this image.

getPropertyNames(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns an array of Strings recognized as names by this property source that begin with the supplied prefix.

getPropertyNames() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getPropertyNumber() - Method in class loci.poi.ddf.EscherProperty

getPropertySet(String) - Method in class loci.poi.POIDocument

For a given named property entry, either return it or null if if it wasn't found

getPropertySize() - Method in class loci.poi.ddf.EscherComplexProperty

Caclulates the number of bytes required to serialize this property.

getPropertySize() - Method in class loci.poi.ddf.EscherProperty

Most properties are just 6 bytes in length.

getPropertyStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader

get start of Property Table

getPropertyType(short) - Static method in class loci.poi.ddf.EscherProperties

getPropertyValue() - Method in class loci.poi.ddf.EscherSimpleProperty

getProtect() - Method in class loci.poi.hssf.model.Sheet

Returns the ProtectRecord.

getProtect() - Method in class loci.poi.hssf.record.ObjectProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.ProtectionRev4Record

get whether the this is protected shared/tracked workbook or not

getProtect() - Method in class loci.poi.hssf.record.ProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.WindowProtectRecord

is this window protected or not

getProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether protection is enabled or disabled

getProtocolDescription() - Method in class ome.xml.model.Screen

getProtocolIdentifier() - Method in class ome.xml.model.Screen

getProtpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getPtgClass() - Method in class loci.poi.hssf.record.formula.Ptg

returns the class (REF/VALUE/ARRAY) for this Ptg

getPtgSize(int) - Method in class loci.poi.hssf.model.FormulaParser

Adds the size of all the ptgs after the provided index (inclusive).

getPtgSize(int, int) - Method in class loci.poi.hssf.model.FormulaParser

getPulse(String) - Method in class loci.formats.FormatReader

Retrieves an Pulse enumeration value for the given String.

getPulse() - Method in class ome.xml.model.Laser

getQTVersion() - Method in class loci.formats.gui.LegacyQTTools

Gets the QuickTime for Java version number.

getQuantity(T, UnitsElectricPotential) - Static method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getQuantity(T, UnitsElectricPotential) - Static method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getQuantity(T, UnitsFrequency) - Static method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getQuantity(T, UnitsFrequency) - Static method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getQuantity(T, UnitsLength) - Static method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getQuantity(T, UnitsLength) - Static method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getQuantity(T, UnitsPower) - Static method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getQuantity(T, UnitsPower) - Static method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getQuantity(T, UnitsPressure) - Static method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getQuantity(T, UnitsPressure) - Static method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getQuantity(T, UnitsTemperature) - Static method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getQuantity(T, UnitsTemperature) - Static method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getQuantity(T, UnitsTime) - Static method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getQuantity(T, UnitsTime) - Static method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getQuantizationStep() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets quantizationStep

getQuantizationType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets quantizationType

getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC

getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD

getQuantTypeSpec() - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the quantization type spec object associated to the quantizer.

getQuietInfo() - Method in class loci.plugins.in.ImporterOptions

getRadiusX() - Method in class ome.xml.model.Ellipse

getRadiusY() - Method in class ome.xml.model.Ellipse

getRandomAccessFile() - Method in class loci.common.FileHandle

Gets the random access file object backing this FileHandle.

getRandomAccessFile() - Method in class loci.common.NIOFileHandle

Gets the random access file object backing this FileHandle.

getRange() - Method in class loci.formats.cache.CacheStrategy

getRange() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the number of objects to cache along each axis.

getRange() - Method in class loci.poi.hssf.util.RangeAddress

getRasterLength(int[]) - Static method in class loci.formats.FormatTools

Computes the number of raster values for a positional array with the given lengths.

getRaw() - Method in class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam

Returns the value of the raw parameter.

getRawData() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getRawDataSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord

getRawImageType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Returns an ImageTypeSpecifier describing an image whose underlying data array has the same format as the raw source pixel data.

getRawImageTypeSpecifier(int, int, int, int[], int[], int[], char[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

A utility method that returns an ImageTypeSpecifier suitable for decoding an image with the given parameters.

getRawSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the length of the raw sheetname in characters the length depends on the unicode flag

getRawValue(int) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, unshifted

getReader(int) - Method in class loci.formats.FileStitcher.ExternalSeries

getReader() - Method in class loci.formats.FileStitcher

Gets the wrapped reader prototype.

getReader(int) - Method in class loci.formats.FileStitcher

Gets the reader appropriate for use with the given image plane.

getReader(int, int) - Method in class loci.formats.FileStitcher

Gets the reader that should be used with the given series and image plane.

getReader(IFormatReader, Class<? extends IFormatReader>) - Static method in class loci.formats.FormatTools

Recursively look for the first underlying reader that is an instance of the given class.

getReader() - Method in class loci.formats.gui.FormatFileFilter

Returns the filter's reader.

getReader(String) - Method in class loci.formats.ImageReader

Gets the reader used to open the given file.

getReader() - Method in class loci.formats.ImageReader

Gets the reader used to open the current file.

getReader(Class<? extends IFormatReader>) - Method in class loci.formats.ImageReader

Gets the file format reader instance matching the given class.

getReader(String, boolean) - Method in class loci.formats.in.CellWorxReader

getReader() - Method in class loci.formats.ReaderWrapper

Gets the wrapped reader.

getReader() - Method in class loci.formats.services.JAIIIOServiceImpl

Set up the JPEG-2000 image reader.

getReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getReader() - Method in class loci.plugins.util.BFVirtualStack

getReader() - Method in class loci.tests.testng.Configuration

getReaders() - Method in class loci.formats.FileStitcher.ExternalSeries

getReaders() - Method in class loci.formats.ImageReader

Gets all constituent file format readers.

getReadingOrder() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the reading order for far east versions (0 - Context, 1 - Left to right, 2 - right to left) - We could use some help with support for the far east.

getReadOnly() - Method in class loci.poi.hssf.record.FileSharingRecord

get the readonly

getReadOutRate() - Method in class loci.formats.in.MetamorphHandler

getReadOutRate() - Method in class ome.xml.model.DetectorSettings

getReadOutRateUnitXsdDefault() - Static method in class ome.xml.model.DetectorSettings

getReagent(int) - Method in class ome.xml.model.Screen

getReagentAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Reagent.

getReagentAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Reagent.

getReagentAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentCount(int) - Method in class ome.xml.meta.AggregateMetadata

getReagentCount(int) - Method in class ome.xml.meta.DummyMetadata

getReagentCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Reagent elements.

getReagentCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentDescription(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Reagent.

getReagentDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentID(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Reagent.

getReagentID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentIdentifier() - Method in class ome.xml.model.Reagent

getReagentName(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentName(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Reagent.

getReagentName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentReagentIdentifier(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentReagentIdentifier(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentReagentIdentifier(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ReagentIdentifier property of Reagent.

getReagentReagentIdentifier(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentSetDescription() - Method in class ome.xml.model.Screen

getReagentSetIdentifier() - Method in class ome.xml.model.Screen

getRealSTKFile(Location) - Method in class loci.formats.in.MetamorphReader

Check that the given STK file exists.

getReason() - Method in exception loci.poi.hpsf.HPSFException

Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.

getReason() - Method in exception loci.poi.hpsf.HPSFRuntimeException

Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.

getReason() - Method in exception loci.poi.hssf.eventusermodel.HSSFUserException

Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.

getRecalc() - Method in class loci.poi.hssf.record.SaveRecalcRecord

get whether to recalculate formulas/etc before saving or not

getRecalcIdArray() - Method in class loci.poi.hssf.record.RecalcIdRecord

get the recalc array.

getRecord() - Method in class loci.poi.hssf.dev.BiffViewer.RecordDetails

getRecordedProcessor() - Method in class loci.plugins.util.BFVirtualStack

getRecordId() - Method in class loci.poi.ddf.EscherChildAnchorRecord

The record id for the EscherChildAnchorRecord.

getRecordId() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The record id for this record.

getRecordId() - Method in class loci.poi.ddf.EscherClientDataRecord

Returns the identifier of this record.

getRecordId() - Method in class loci.poi.ddf.EscherDggRecord

getRecordId() - Method in class loci.poi.ddf.EscherDgRecord

getRecordId() - Method in class loci.poi.ddf.EscherRecord.EscherRecordHeader

getRecordId() - Method in class loci.poi.ddf.EscherRecord

Return the current record id.

getRecordId() - Method in class loci.poi.ddf.EscherSpgrRecord

The 16 bit identifier of this shape group record.

getRecordId() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getRecordId() - Method in class loci.poi.ddf.EscherSpRecord

getRecordName() - Method in class loci.poi.ddf.EscherBlipRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherBlipWMFRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherBSERecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherChildAnchorRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherClientDataRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherContainerRecord

getRecordName() - Method in class loci.poi.ddf.EscherDggRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherDgRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherOptRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherRecord

Subclasses should return the short name for this escher record.

getRecordName() - Method in class loci.poi.ddf.EscherSpgrRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherSpRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherTextboxRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.UnknownEscherRecord

The short name for this record

getRecordName() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getRecordName() - Method in class loci.poi.hssf.record.DrawingGroupRecord

getRecordName() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer

getRecordName() - Method in class loci.poi.hssf.record.DrawingSelectionRecord

getRecordName() - Method in class loci.poi.hssf.record.EscherAggregate

getRecordOffset() - Method in class loci.poi.hssf.record.RecordInputStream

getRecords() - Method in class loci.poi.hssf.model.Sheet

getRecords() - Method in class loci.poi.hssf.model.Workbook

getRecords() - Method in class loci.poi.hssf.model.WorkbookRecordList

getRecordSize() - Method in class loci.poi.ddf.EscherBitmapBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBlipRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBSERecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherClientAnchorRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherClientDataRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherContainerRecord

getRecordSize() - Method in class loci.poi.ddf.EscherDggRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherDgRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherMetafileBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherOptRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherPictBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherRecord

Subclasses should effeciently return the number of bytes required to serialize the record.

getRecordSize() - Method in class loci.poi.ddf.EscherSpgrRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherSpRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherTextboxRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.UnknownEscherRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Size of record (including 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getRecordSize() - Method in class loci.poi.hssf.record.AreaFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AreaRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisParentRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisUsedRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BackupRecord

getRecordSize() - Method in class loci.poi.hssf.record.BarRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BeginRecord

getRecordSize() - Method in class loci.poi.hssf.record.BlankRecord

getRecordSize() - Method in class loci.poi.hssf.record.BOFRecord

getRecordSize() - Method in class loci.poi.hssf.record.BookBoolRecord

getRecordSize() - Method in class loci.poi.hssf.record.BoolErrRecord

getRecordSize() - Method in class loci.poi.hssf.record.BottomMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BoundSheetRecord

getRecordSize() - Method in class loci.poi.hssf.record.CalcCountRecord

getRecordSize() - Method in class loci.poi.hssf.record.CalcModeRecord

getRecordSize() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.ChartFormatRecord

getRecordSize() - Method in class loci.poi.hssf.record.ChartRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.CodepageRecord

getRecordSize() - Method in class loci.poi.hssf.record.ColumnInfoRecord

getRecordSize() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.CountryRecord

getRecordSize() - Method in class loci.poi.hssf.record.DataFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DateWindow1904Record

getRecordSize() - Method in class loci.poi.hssf.record.DatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DBCellRecord

getRecordSize() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

getRecordSize() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

getRecordSize() - Method in class loci.poi.hssf.record.DeltaRecord

getRecordSize() - Method in class loci.poi.hssf.record.DimensionsRecord

getRecordSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord

Size of record (including 4 byte headers for all sections)

getRecordSize() - Method in class loci.poi.hssf.record.DrawingRecord

getRecordSize() - Method in class loci.poi.hssf.record.DSFRecord

getRecordSize() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.EndRecord

getRecordSize() - Method in class loci.poi.hssf.record.EndSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.EOFRecord

getRecordSize() - Method in class loci.poi.hssf.record.EscherAggregate

The number of bytes required to serialize this record.

getRecordSize() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetRecord

getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

returns the record size

getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTRecord

Returns the size of this record

getRecordSize() - Method in class loci.poi.hssf.record.FilePassRecord

getRecordSize() - Method in class loci.poi.hssf.record.FileSharingRecord

getRecordSize() - Method in class loci.poi.hssf.record.FnGroupCountRecord

getRecordSize() - Method in class loci.poi.hssf.record.FontBasisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.FontIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.FontRecord

getRecordSize() - Method in class loci.poi.hssf.record.FooterRecord

getRecordSize() - Method in class loci.poi.hssf.record.FormatRecord

getRecordSize() - Method in class loci.poi.hssf.record.FormulaRecord

getRecordSize() - Method in class loci.poi.hssf.record.FrameRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.GridsetRecord

getRecordSize() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.GutsRecord

getRecordSize() - Method in class loci.poi.hssf.record.HCenterRecord

getRecordSize() - Method in class loci.poi.hssf.record.HeaderRecord

getRecordSize() - Method in class loci.poi.hssf.record.HideObjRecord

getRecordSize() - Method in class loci.poi.hssf.record.IndexRecord

getRecordSize() - Method in class loci.poi.hssf.record.InterfaceEndRecord

getRecordSize() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

getRecordSize() - Method in class loci.poi.hssf.record.IterationRecord

getRecordSize() - Method in class loci.poi.hssf.record.LabelSSTRecord

getRecordSize() - Method in class loci.poi.hssf.record.LeftMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LegendRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LineFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LinkedDataRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.MergeCellsRecord

getRecordSize() - Method in class loci.poi.hssf.record.MMSRecord

getRecordSize() - Method in class loci.poi.hssf.record.NameRecord

returns the record size

getRecordSize() - Method in class loci.poi.hssf.record.NoteRecord

Size of record

getRecordSize() - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Size of record

getRecordSize() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.NumberRecord

getRecordSize() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.ObjectProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.ObjRecord

Size of record (excluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PageBreakRecord

getRecordSize() - Method in class loci.poi.hssf.record.PaletteRecord

getRecordSize() - Method in class loci.poi.hssf.record.PaneRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PasswordRecord

getRecordSize() - Method in class loci.poi.hssf.record.PasswordRev4Record

getRecordSize() - Method in class loci.poi.hssf.record.PlotAreaRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PrecisionRecord

getRecordSize() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

getRecordSize() - Method in class loci.poi.hssf.record.PrintHeadersRecord

getRecordSize() - Method in class loci.poi.hssf.record.PrintSetupRecord

getRecordSize() - Method in class loci.poi.hssf.record.ProtectionRev4Record

getRecordSize() - Method in class loci.poi.hssf.record.ProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.RecalcIdRecord

getRecordSize() - Method in class loci.poi.hssf.record.Record

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.RefModeRecord

getRecordSize() - Method in class loci.poi.hssf.record.RefreshAllRecord

getRecordSize() - Method in class loci.poi.hssf.record.RightMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.RowRecord

getRecordSize() - Method in class loci.poi.hssf.record.SaveRecalcRecord

getRecordSize() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.SCLRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SelectionRecord

getRecordSize() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesListRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesTextRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getRecordSize() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SSTRecord

getRecordSize() - Method in class loci.poi.hssf.record.SSTRecordSizeCalculator

getRecordSize() - Method in class loci.poi.hssf.record.StringRecord

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.StyleRecord

getRecordSize() - Method in class loci.poi.hssf.record.SupBookRecord

getRecordSize() - Method in class loci.poi.hssf.record.TabIdRecord

getRecordSize() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TextObjectRecord

getRecordSize() - Method in class loci.poi.hssf.record.TextRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TickRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TopMarginRecord

Size of record (exluding 4 byte header)

getRecordSize(UnicodeString.UnicodeRecordStats) - Method in class loci.poi.hssf.record.UnicodeString

getRecordSize() - Method in class loci.poi.hssf.record.UnitsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.UnknownRecord

getRecordSize() - Method in class loci.poi.hssf.record.UseSelFSRecord

getRecordSize() - Method in class loci.poi.hssf.record.ValueRangeRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.VCenterRecord

getRecordSize() - Method in class loci.poi.hssf.record.WindowOneRecord

getRecordSize() - Method in class loci.poi.hssf.record.WindowProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.WindowTwoRecord

getRecordSize() - Method in class loci.poi.hssf.record.WriteAccessRecord

getRecordSize() - Method in class loci.poi.hssf.record.WriteProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.WSBoolRecord

getRecordSizeForBlockCount(int) - Static method in class loci.poi.hssf.record.IndexRecord

Returns the size of an INdexRecord when it needs to index the specified number of blocks

getRecordSizeForRows(int) - Static method in class loci.poi.hssf.record.DBCellRecord

Returns the size of a DBCellRecord when it needs to reference a certain number of rows

getRecordSizeForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord

Given a number of strings (in the sst), returns the size of the extsst record

getRecsize() - Method in class loci.poi.hssf.dev.BiffViewer.RecordDetails

getRectangleAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Rectangle.

getRectangleAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Rectangle.

getRectangleFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Rectangle.

getRectangleFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Rectangle.

getRectangleFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Rectangle.

getRectangleFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Rectangle.

getRectangleFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleHeight(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleHeight(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleHeight(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Height property of Rectangle.

getRectangleHeight(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleID(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Rectangle.

getRectangleID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Rectangle.

getRectangleLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Rectangle.

getRectangleLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Rectangle.

getRectangleStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Rectangle.

getRectangleStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Rectangle.

getRectangleStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleText(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Rectangle.

getRectangleText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Rectangle.

getRectangleTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Rectangle.

getRectangleTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Rectangle.

getRectangleTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Rectangle.

getRectangleTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Rectangle.

getRectangleVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Width property of Rectangle.

getRectangleWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleX(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Rectangle.

getRectangleX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleY(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Rectangle.

getRectangleY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectX1() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

getRectX2() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

getRectY1() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

getRectY2() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

getRectype() - Method in class loci.poi.hssf.dev.BiffViewer.RecordDetails

getRed(int) - Method in class loci.formats.gui.Index16ColorModel

getRed(int) - Method in class loci.formats.gui.SignedColorModel

getRed(Object) - Method in class loci.formats.gui.SignedColorModel

getRed(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getRed(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getRed() - Method in class loci.poi.ddf.EscherRGBProperty

getRed() - Method in class ome.xml.model.primitives.Color

Returns the red component of this color.

getRedOffset(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

For the given pixel format, returns the number of bytes that the red component is offset from the start of the pixel.

getReds() - Method in class loci.formats.gui.Index16ColorModel

Return the array of red color components.

getReducedRect(Rectangle, int, int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Convert a rectangle provided in the coordinate system of the JPEG2000 reference grid to coordinates at a lower resolution level where zero denotes the lowest resolution level.

getRef() - Method in class loci.poi.ddf.EscherBSERecord

The reference count of this blip.

getReference() - Method in class loci.poi.hssf.usermodel.HSSFName

gets the reference of the named range

getReferences() - Method in interface ome.xml.model.OMEModel

getReferences() - Method in class ome.xml.model.OMEModelImpl

getReferenceType() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the reference type field for the LinkedData record.

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefAPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNAPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNVPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefVPtg

getRefractiveIndex() - Method in class loci.formats.in.ND2Handler

getRefractiveIndex() - Method in class ome.xml.model.ObjectiveSettings

getREFRecordAt(int) - Method in class loci.poi.hssf.record.ExternSheetRecord

returns the REF record (ExternSheetSubRecord)

getRefreshAll() - Method in class loci.poi.hssf.record.RefreshAllRecord

get whether to refresh all external data when loading a sheet

getRelativeTime() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the relativeTime associated with this Frame.

getRemainingBytes() - Method in class loci.poi.ddf.EscherRecord.EscherRecordHeader

getRemainingData() - Method in class loci.poi.ddf.EscherBSERecord

Any remaining data in this record.

getRemainingData() - Method in class loci.poi.ddf.EscherClientAnchorRecord

Any remaining data in the record

getRemainingData() - Method in class loci.poi.ddf.EscherClientDataRecord

Any data recording this record.

getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getRenderingHints() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getRenderingHints() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getReorderedIndex(IFormatReader, String, int) - Static method in class loci.formats.FormatTools

Converts index from the given dimension order to the reader's native one.

getReorderedIndex(String, String, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Converts index from one dimension order to another.

getRepetitionRate() - Method in class ome.xml.model.Laser

getRepetitionRateUnitXsdDefault() - Static method in class ome.xml.model.Laser

getRequiredDirectories(String[]) - Method in class loci.formats.FileStitcher

getRequiredDirectories(String[]) - Method in class loci.formats.FormatReader

getRequiredDirectories(String[]) - Method in interface loci.formats.IFormatReader

Returns the number of parent directories that are important when processing the given list of files.

getRequiredDirectories(String[]) - Method in class loci.formats.ImageReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.BrukerReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.CellVoyagerReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.MIASReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.OperettaReader

getRequiredDirectories(String[]) - Method in class loci.formats.ReaderWrapper

getRequiredEntries() - Static method in enum ome.jxr.ifd.IFDEntry

getRequiredVersion() - Method in class loci.poi.hssf.record.BOFRecord

get the minimum version required to read this file

getReserved() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getReserved() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

getReserved() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the reserved bits - why would you do this?

getReserved1() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved1 field for the Axis record.

getReserved1() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved1 field for the CommonObjectData record.

getReserved2() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved2 field for the Axis record.

getReserved2() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved2 field for the CommonObjectData record.

getReserved2() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getReserved3() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved3 field for the Axis record.

getReserved3() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved3 field for the CommonObjectData record.

getReserved3() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getReserved4() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved4 field for the Axis record.

getReserved4() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved4 field for the TextObjectBase record.

getReserved5() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved5 field for the TextObjectBase record.

getReserved6() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved6 field for the TextObjectBase record.

getReserved7() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved7 field for the TextObjectBase record.

getResetMQ() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets resetMQ

getResolution() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Gets resolution.

getResolution() - Method in class loci.formats.FormatReader

getResolution() - Method in interface loci.formats.IFormatReader

Get the current resolution level.

getResolution() - Method in class loci.formats.ImageReader

getResolution() - Method in class loci.formats.in.FilePatternReader

getResolution() - Method in class loci.formats.ReaderWrapper

getResolution(ImageReader) - Method in class loci.poi.hssf.usermodel.HSSFPicture

The metadata of PNG and JPEG can contain the width of a pixel in millimeters.

getResolutionCount() - Method in class loci.formats.FormatReader

getResolutionCount() - Method in interface loci.formats.IFormatReader

Return the number of resolutions for the current series.

getResolutionCount() - Method in class loci.formats.ImageReader

getResolutionCount() - Method in class loci.formats.in.FilePatternReader

getResolutionCount() - Method in class loci.formats.ReaderWrapper

getResolutionLevels() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of resolution levels the file JPEG 2000 data has.

getResolutionMultiplier() - Method in class loci.formats.tiff.IFD

Retrieve the value by which to multiply the X and Y resolution so that the resolutions are in microns per pixel.

getResolutionUnitFromComment(IFD) - Method in class loci.formats.in.BaseTiffReader

Extracts the resolution unit symbol from the comment field

getResource(String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getRestartMarkers() - Method in interface loci.formats.services.JPEGTurboService

getRestartMarkers() - Method in class loci.formats.services.JPEGTurboServiceImpl

getResult() - Method in interface mdbtools.dbengine.functions.Aggregate

getResult() - Method in class mdbtools.dbengine.functions.Count

getResult() - Method in class mdbtools.dbengine.functions.Max

getResult() - Method in class mdbtools.dbengine.functions.Min

getResult() - Method in class mdbtools.dbengine.functions.Sum

getResult() - Method in class mdbtools.dbengine.tasks.AggregateQuery

getResult() - Method in class mdbtools.dbengine.tasks.FilterData

getResult() - Method in class mdbtools.dbengine.tasks.LoadData

getResult() - Method in class mdbtools.dbengine.tasks.NonAggregateQuery

getResult() - Method in class mdbtools.dbengine.tasks.SimpleSort

getResult() - Method in interface mdbtools.dbengine.tasks.Task

getResULX(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getResULX(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getResULX(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal coordinate of the upper-left corner of the specified resolution level in the given component of the current tile.

getResULY(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical coordinate of the upper-left corner of the specified component in the given component of the current tile.

getResULY(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getResULY(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getRevision(String[]) - Method in class loci.plugins.macro.LociFunctions

getRevNumber() - Method in class loci.poi.hpsf.SummaryInformation

Returns the revision number (or null).

getRGB() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

getRGBChannelCount() - Method in class loci.formats.FormatReader

getRGBChannelCount() - Method in interface loci.formats.IFormatReader

Gets the number of channels returned with each call to openBytes.

getRGBChannelCount() - Method in class loci.formats.ImageReader

getRGBChannelCount() - Method in class loci.formats.in.FilePatternReader

getRGBChannelCount() - Method in class loci.formats.ReaderWrapper

getRGBChannelCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getRgbColor() - Method in class loci.poi.ddf.EscherRGBProperty

getRgbColor() - Method in class loci.poi.hssf.record.TextRecord

Get the rgbColor field for the Text record.

getRichStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a string - for numeric cells we throw an exception.

getRight() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the right side of the footer.

getRight() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the right side of the header.

getRight(int) - Method in class loci.poi.util.BinaryTree.Node

get the right node

getRight() - Method in class mdbtools.dbengine.sql.Condition

getRight() - Method in class mdbtools.dbengine.sql.Equation

getRight() - Method in class mdbtools.dbengine.sql.Join

getRightBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getRightBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the right border color

getRightChild(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

get a node's right child.

getRights() - Method in class ome.xml.model.OME

getRightsHeld() - Method in class ome.xml.model.Rights

getRightsHolder() - Method in class ome.xml.model.Rights

getRightsRightsHeld() - Method in class ome.xml.meta.AggregateMetadata

getRightsRightsHeld() - Method in class ome.xml.meta.DummyMetadata

getRightsRightsHeld() - Method in interface ome.xml.meta.MetadataRetrieve

Get the RightsHeld property of Rights.

getRightsRightsHeld() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRightsRightsHolder() - Method in class ome.xml.meta.AggregateMetadata

getRightsRightsHolder() - Method in class ome.xml.meta.DummyMetadata

getRightsRightsHolder() - Method in interface ome.xml.meta.MetadataRetrieve

Get the RightsHolder property of Rights.

getRightsRightsHolder() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRKField() - Method in class loci.poi.hssf.record.RKRecord

getRKNumber() - Method in class loci.poi.hssf.record.RKRecord

Extract the value of the number

getRKNumberAt(int) - Method in class loci.poi.hssf.record.MulRKRecord

returns the rk number for column (coffset = column - field_2_first_col)

getRKType() - Method in class loci.poi.hssf.record.RKRecord

Get the type of the number

getRoi() - Method in class loci.plugins.util.RecordedImageProcessor

getROI(int) - Method in class ome.xml.model.OME

getROIAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getROIAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getROIAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of ROI.

getROIAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROIAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getROIAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getROIAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in ROI.

getROIAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROICount() - Method in class ome.xml.meta.AggregateMetadata

getROICount() - Method in class ome.xml.meta.DummyMetadata

getROICount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ROI elements.

getROICount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROIDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getROIDescription(int) - Method in class ome.xml.meta.DummyMetadata

getROIDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of ROI.

getROIDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROIID(int) - Method in class ome.xml.meta.AggregateMetadata

getROIID(int) - Method in class ome.xml.meta.DummyMetadata

getROIID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of ROI.

getROIID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROILen() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Gives the length to read in current packet body to get all ROI information

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This functions gets a DataBlk the size of the current code-block an fills this block with the ROI mask.

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

This functions gets a DataBlk the size of the current code-block and fills this block with the ROI mask.

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This functions gets a DataBlk with the size of the current code-block and fills it with the ROI mask.

getROIMaskGenerator() - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function returns the ROI mask generator.

getROIName(int) - Method in class ome.xml.meta.AggregateMetadata

getROIName(int) - Method in class ome.xml.meta.DummyMetadata

getROIName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of ROI.

getROIName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROINamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getROINamespace(int) - Method in class ome.xml.meta.DummyMetadata

getROINamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of ROI.

getROINamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROIs() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets ROIs

getROIs() - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This function returns the ROIs in the image

getROIs() - Method in class loci.formats.in.ND2Handler

getRoot() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

get the root entry

getRoot() - Method in class loci.poi.poifs.property.PropertyTable

Get the root property

getRoot() - Method in class ome.specification.XMLMockObjects

Returns the root of the XML file.

getRoot() - Method in class ome.xml.meta.AggregateMetadata

Unsupported with an AggregateMetadata.

getRoot() - Method in class ome.xml.meta.DummyMetadata

getRoot() - Method in class ome.xml.meta.FilterMetadata

getRoot() - Method in interface ome.xml.meta.MetadataStore

Get the root node of the metadata.

getRoot() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRootDirectory() - Method in class loci.tests.testng.ConfigurationTree

Returns the toot directory holding the data

getRootIFD() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getRootIFDOffset() - Method in class ome.jxr.parser.FileParser

getRootName() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getRotation() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the degree of rotation.

getRotation() - Method in class loci.poi.hssf.record.TextRecord

getRotation() - Method in class loci.poi.hssf.record.TickRecord

rotate text (0=none, 1=normal, 2=90 degrees counterclockwise, 3=90 degrees clockwise)

getRotation() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the degree of rotation for the text in the cell

getRotationTransform(double) - Method in class loci.formats.FormatReader

Construct an AffineTransform corresponding to the given angle.

getRow() - Method in class loci.formats.in.OMEXMLReader.BinData

getRow(String) - Method in class loci.formats.in.ScreenReader

getRow(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor

getRow(int) - Method in class loci.poi.hssf.model.Sheet

get the NEXT (from LOC) RowRecord where rownumber matches the given rownum.

getRow() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getRow() - Method in class loci.poi.hssf.record.BlankRecord

get the row this cell occurs on

getRow() - Method in class loci.poi.hssf.record.BoolErrRecord

getRow() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

get the row this cell occurs on

getRow() - Method in class loci.poi.hssf.record.formula.ExpPtg

getRow() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getRow() - Method in class loci.poi.hssf.record.formula.ReferencePtg

Returns the row number as a short, which will be wrapped (negative) for values between 32769 and 65535

getRow() - Method in class loci.poi.hssf.record.FormulaRecord

getRow() - Method in class loci.poi.hssf.record.LabelRecord

getRow() - Method in class loci.poi.hssf.record.LabelSSTRecord

getRow() - Method in class loci.poi.hssf.record.MulBlankRecord

get the row number of the cells this represents

getRow() - Method in class loci.poi.hssf.record.MulRKRecord

getRow() - Method in class loci.poi.hssf.record.NoteRecord

Return the row that contains the comment

getRow() - Method in class loci.poi.hssf.record.NumberRecord

getRow() - Method in class loci.poi.hssf.record.RKRecord

getRow() - Method in class loci.poi.hssf.usermodel.HSSFComment

Return the row of the cell that contains the comment

getRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the logical row (not physical) 0-based.

getRow() - Method in class loci.poi.hssf.util.CellReference

getRow(int) - Method in class mdbtools.dbengine.MemoryData

getRow() - Method in class ome.xml.model.Well

getRow1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the top-left corner of the shape.

getRow1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getRow2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the bottom-right corner of the current shape.

getRow2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getRowAndColumn(int) - Method in class loci.formats.in.ScreenReader

getRowAsInt() - Method in class loci.poi.hssf.record.formula.ReferencePtg

Returns the row number as an int, between 0 and 65535

getRowBlockCount() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the number of row blocks.

getRowBlockSize(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getRowBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns all the row page breaks

getRowBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Retrieves all the horizontal page breaks

getRowCellBlockSize(int, int) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Tallies a count of the size of the cell records that are attached to the rows in the range specified.

getRowCount(int) - Method in interface loci.formats.services.MetakitService

getRowCount(String) - Method in interface loci.formats.services.MetakitService

getRowCount(int) - Method in class loci.formats.services.MetakitServiceImpl

getRowCount(String) - Method in class loci.formats.services.MetakitServiceImpl

getRowCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg

getRowCount(int) - Method in class ome.metakit.MetakitReader

Retrieve the number of rows in the table with the given index.

getRowCount(String) - Method in class ome.metakit.MetakitReader

Retrieve the number of rows in the named table.

getRowCountForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the number of physical rows within a block

getRowData(String[], double[]) - Method in class loci.formats.in.TextReader

Parses numerical row data from the given tokens.

getRowData(int, String) - Method in interface loci.formats.services.MetakitService

getRowData(int, int) - Method in interface loci.formats.services.MetakitService

getRowData(int, String) - Method in class loci.formats.services.MetakitServiceImpl

getRowData(int, int) - Method in class loci.formats.services.MetakitServiceImpl

getRowData(int, int) - Method in class ome.metakit.MetakitReader

Retrieve the given row of data from the table with the given index.

getRowData(int, String) - Method in class ome.metakit.MetakitReader

Retrieve the given row of data from the named table.

getRowFrom() - Method in class loci.poi.hssf.util.Region

get the upper left hand corner row number

getRowHeight() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

get the default row height

getRowHeightInPoints(HSSFSheet, int) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getRowLevelMax() - Method in class loci.poi.hssf.record.GutsRecord

get the maximum outline level for the row gutter.

getRowNamingConvention() - Method in class ome.xml.model.Plate

getRowNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

get row number this row represents

getRowNumber() - Method in class loci.poi.hssf.record.RowRecord

get the logical row number for this row (0 based index)

getRowOffset() - Method in class loci.poi.hssf.record.DBCellRecord

gets offset from the start of this DBCellRecord to the start of the first cell in the next DBCell block.

getRowRecord() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the lowlevel RowRecord represented by this object - should only be called by other parts of the high level API

getRows() - Method in class ome.xml.model.Plate

getRowsPerStrip() - Method in class loci.formats.tiff.IFD

Retrieves the number of rows per strip for image (TIFF tag RowsPerStrip) from this IFD.

getRowSumsBelow() - Method in class loci.poi.hssf.record.WSBoolRecord

get if row summaries appear below detail in the outline

getRowSumsBelow() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get if row summaries appear below detail in the outline

getRowSumsRight() - Method in class loci.poi.hssf.record.WSBoolRecord

get if col summaries appear right of the detail in the outline

getRowSumsRight() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get if col summaries appear right of the detail in the outline

getRowTo() - Method in class loci.poi.hssf.util.Region

get the lower right hand corner row number

getRPNPtg() - Method in class loci.poi.hssf.model.FormulaParser

API call to retrive the array of Ptgs created as a result of the parsing

getRPNPtg(int) - Method in class loci.poi.hssf.model.FormulaParser

getSample(BitBuffer, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

Deprecated.

getSample(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

getSampleModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the SampleModel of the image.

getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getSamples(IFD, byte[]) - Method in class loci.formats.tiff.TiffParser

getSamples(IFD, byte[], int, int, long, long) - Method in class loci.formats.tiff.TiffParser

getSamples(IFD, byte[], int, int, long, long, int, int) - Method in class loci.formats.tiff.TiffParser

getSamplesPerPixel() - Method in class loci.formats.FormatWriter

Retrieve the number of samples per pixel for the current series.

getSamplesPerPixel(int) - Method in class loci.formats.FormatWriter

Retrieve the number of samples per pixel for given series.

getSamplesPerPixel() - Method in class loci.formats.tiff.IFD

Retrieves the number of samples per pixel for the image (TIFF tag SamplesPerPixel) from this IFD.

getSamplesPerPixel() - Method in class ome.xml.model.Channel

getSavedInPageBreakPreview() - Method in class loci.poi.hssf.record.WindowTwoRecord

was the sheet saved in page break view

getSaveLinkValues() - Method in class loci.poi.hssf.record.BookBoolRecord

get the save ext links flag

getSBAT() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Get the SBAT

getSBATBlockCount() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Get the number of SBAT blocks

getSBATStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getScale() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns true when scaling of the thumbnail is desired, false if cropping is desired.

getScale() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the scale field for the FontBasis record.

getScale() - Method in class loci.poi.hssf.record.PrintSetupRecord

getScale() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the scale.

getScaled(int) - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor

Returns the scaled value of dimension.

getScaledHeight(int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the height of the largest scaled down image that the TurboJPEG decompressor can generate without exceeding the desired image width and height.

getScaledWidth(int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the width of the largest scaled down image that the TurboJPEG decompressor can generate without exceeding the desired image width and height.

getScaleFactor() - Method in class ome.units.unit.Unit

getScalingFactors() - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns a list of fractional scaling factors that the JPEG decompressor in this implementation of TurboJPEG supports.

getScanline(int) - Method in class loci.formats.codec.JPEGTileDecoder

getScanlinePad() - Method in class loci.formats.in.NativeND2Reader

getScanNames() - Method in class loci.formats.in.L2DReader

Return a list of scan names.

getScenarioProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether scenario protection is enabled or disabled

getSchemaPath() - Method in class loci.common.xml.ValidationSAXHandler

getScreen(int) - Method in class ome.xml.model.OME

getScreen() - Method in class ome.xml.model.Reagent

getScreenAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getScreenAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getScreenAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Screen.

getScreenAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getScreenAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Screen.

getScreenAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenCount() - Method in class ome.xml.meta.AggregateMetadata

getScreenCount() - Method in class ome.xml.meta.DummyMetadata

getScreenCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Screen elements.

getScreenCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenDescription(int) - Method in class ome.xml.meta.DummyMetadata

getScreenDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Screen.

getScreenDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenID(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenID(int) - Method in class ome.xml.meta.DummyMetadata

getScreenID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Screen.

getScreenID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenName(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenName(int) - Method in class ome.xml.meta.DummyMetadata

getScreenName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Screen.

getScreenName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenPlateRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getScreenPlateRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getScreenPlateRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PlateRef property of Screen.

getScreenPlateRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenProtocolDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenProtocolDescription(int) - Method in class ome.xml.meta.DummyMetadata

getScreenProtocolDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ProtocolDescription property of Screen.

getScreenProtocolDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenProtocolIdentifier(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenProtocolIdentifier(int) - Method in class ome.xml.meta.DummyMetadata

getScreenProtocolIdentifier(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ProtocolIdentifier property of Screen.

getScreenProtocolIdentifier(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenReagentSetDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenReagentSetDescription(int) - Method in class ome.xml.meta.DummyMetadata

getScreenReagentSetDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ReagentSetDescription property of Screen.

getScreenReagentSetDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenReagentSetIdentifier(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenReagentSetIdentifier(int) - Method in class ome.xml.meta.DummyMetadata

getScreenReagentSetIdentifier(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ReagentSetIdentifier property of Screen.

getScreenReagentSetIdentifier(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenType(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenType(int) - Method in class ome.xml.meta.DummyMetadata

getScreenType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Screen.

getScreenType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getSecondaryUID() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the secondary UID

getSectionCount() - Method in class loci.poi.hpsf.PropertySet

Returns the number of Sections in the property set.

getSectionCount() - Method in class loci.poi.hpsf.SpecialPropertySet

getSections() - Method in class loci.poi.hpsf.PropertySet

Returns the Sections in the property set.

getSections() - Method in class loci.poi.hpsf.SpecialPropertySet

getSecurity() - Method in class loci.poi.hpsf.SummaryInformation

Returns a security code which is one of the following values:

getSegmentLength() - Method in class com.sun.media.imageio.stream.StreamSegment

Returns the length of the segment.

getSelected() - Method in class loci.poi.hssf.record.WindowTwoRecord

sheet tab is selected

getSelectedTab() - Method in class loci.poi.hssf.record.WindowOneRecord

get the selected tab number

getSelectedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the tab whose data is actually seen when the sheet is opened.

getSelection() - Method in class loci.poi.hssf.model.Sheet

getSequence() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the <Sequence> containing this <Frame>.

getSequence(int) - Method in class loci.formats.in.PrairieMetadata

Gets the Sequence at the given cycle.

getSequences() - Method in class loci.formats.in.PrairieMetadata

Gets all Sequences, ordered by cycle.

getSerialNumber() - Method in class ome.xml.model.ManufacturerSpec

getSeries() - Method in class loci.formats.FileStitcher

getSeries() - Method in class loci.formats.FormatReader

getSeries() - Method in class loci.formats.FormatWriter

getSeries() - Method in interface loci.formats.IFormatReader

Gets the currently active series.

getSeries() - Method in interface loci.formats.IFormatWriter

Returns the current series.

getSeries() - Method in class loci.formats.ImageReader

getSeries() - Method in class loci.formats.ImageWriter

getSeries() - Method in class loci.formats.in.FilePatternReader

getSeries() - Method in class loci.formats.ReaderWrapper

getSeries() - Method in class loci.formats.WriterWrapper

getSeries(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesCount() - Method in class loci.formats.FileStitcher

getSeriesCount() - Method in class loci.formats.FormatReader

getSeriesCount() - Method in interface loci.formats.IFormatReader

Gets the number of series in this file.

getSeriesCount() - Method in class loci.formats.ImageReader

getSeriesCount() - Method in class loci.formats.in.FilePatternReader

getSeriesCount() - Method in class loci.formats.in.ND2Handler

getSeriesCount() - Method in class loci.formats.ReaderWrapper

getSeriesCount() - Method in class loci.formats.TileStitcher

getSeriesCount() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getSeriesCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesCount() - Method in class loci.tests.testng.Configuration

getSeriesHashtable(int) - Method in class loci.formats.in.LeicaHandler

getSeriesIndex(int, int, int) - Method in class loci.formats.in.MetamorphTiffReader

getSeriesIndex(int, int) - Method in class loci.formats.in.ScreenReader

getSeriesIndex() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the series index field for the DataFormat record.

getSeriesLabel(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getSeriesMeta(String) - Method in class loci.formats.FormatReader

Gets an entry from the metadata table for the current series.

getSeriesMetadata() - Method in class loci.formats.FileStitcher

getSeriesMetadata() - Method in class loci.formats.FormatReader

getSeriesMetadata() - Method in interface loci.formats.IFormatReader

Obtains the hashtable containing metadata field/value pairs from the current series in the current file.

getSeriesMetadata() - Method in class loci.formats.ImageReader

getSeriesMetadata() - Method in class loci.formats.in.FilePatternReader

getSeriesMetadata() - Method in class loci.formats.ReaderWrapper

getSeriesMetadataValue(String) - Method in class loci.formats.FormatReader

getSeriesMetadataValue(String) - Method in interface loci.formats.IFormatReader

Obtains the specified metadata field's value for the current series in the current file.

getSeriesMetadataValue(String) - Method in class loci.formats.ImageReader

getSeriesMetadataValue(String) - Method in class loci.formats.in.FilePatternReader

getSeriesMetadataValue(String) - Method in class loci.formats.ReaderWrapper

getSeriesMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesName(String[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesNumber() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the series number field for the DataFormat record.

getSeriesNumbers() - Method in class loci.poi.hssf.record.SeriesListRecord

Get the series numbers field for the SeriesList record.

getSeriesUsedFiles(boolean) - Method in class loci.formats.DelegateReader

getSeriesUsedFiles() - Method in class loci.formats.FileStitcher

getSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getSeriesUsedFiles() - Method in class loci.formats.FormatReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader

getSeriesUsedFiles() - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open the current series.

getSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open the current series.

getSeriesUsedFiles() - Method in class loci.formats.ImageReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AFIReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AnalyzeReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.APLReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BDReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BioRadReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BrukerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellomicsReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellSensReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellVoyagerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellWorxReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DeltavisionReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DicomReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FakeReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FilePatternReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FlexReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FujiReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FV1000Reader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HamamatsuVMSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HitachiReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ICSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImagicReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImprovisionTiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.InCellReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.JEOLReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.JPEGReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.L2DReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.LeicaReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MetamorphReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MIASReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MicromanagerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NativeQTReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NDPISReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NiftiReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NRRDReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OMETiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OperettaReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PCORAWReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PDSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PerkinElmerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PrairieReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScanrReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScreenReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.SlidebookTiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TCSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TillVisionReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TrestleReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VarianFDFReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VisitechReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VolocityReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissCZIReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissLSMReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissTIFFReader

getSeriesUsedFiles() - Method in class loci.formats.ReaderWrapper

getSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getService() - Method in class loci.formats.Memoizer

getSHA1() - Method in class ome.xml.model.External

getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

Returns a TIFFIFD wherein all fields from the BaselineTIFFTagSet are copied by value and all other fields copied by reference.

getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

Returns a TIFFImageMetadata wherein all fields in the root IFD from the BaselineTIFFTagSet are copied by value and all other fields copied by reference.

getShape(String) - Method in interface loci.formats.services.JHDFService

Retrieves the shape of a dataset.

getShape(String) - Method in class loci.formats.services.JHDFServiceImpl

getShape(int) - Method in class ome.xml.model.Union

getShapeAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getShapeAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getShapeAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Shape.

getShapeAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getShapeCount(int) - Method in class ome.xml.meta.AggregateMetadata

getShapeCount(int) - Method in class ome.xml.meta.DummyMetadata

getShapeCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Shape elements.

getShapeCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getShapeId() - Method in class loci.poi.ddf.EscherSpRecord

getShapeId() - Method in class loci.poi.hssf.record.NoteRecord

Object id for OBJ record that contains the comment

getShapeIdMax() - Method in class loci.poi.ddf.EscherDggRecord

getShapeType() - Method in class loci.poi.hssf.usermodel.HSSFSimpleShape

Gets the shape type.

getShapeType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getShapeType(int, int) - Method in class ome.xml.meta.DummyMetadata

getShapeType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the type of a Shape.

getShapeType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getSheet() - Method in class loci.poi.hssf.usermodel.HSSFSheet

used internally in the API to get the low level Sheet record represented by this Object.

getSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Get sheet with the given name

getSheetAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Get the HSSFSheet object at the given index.

getSheetIndex(String) - Method in class loci.poi.hssf.model.Workbook

get the sheet's index

getSheetIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the index of the sheet by his name

getSheetIndex(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the index of the given sheet

getSheetIndexFromExternSheetIndex(int) - Method in class loci.poi.hssf.model.Workbook

Finds the sheet index for a particular external sheet number.

getSheetName(int) - Method in class loci.poi.hssf.model.Workbook

gets the name for a given sheet.

getSheetname() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the sheetname for this sheet.

getSheetName() - Method in class loci.poi.hssf.usermodel.HSSFName

Get the sheets name which this named range is referenced to

getSheetName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the sheet name

getSheetName() - Method in class loci.poi.hssf.util.CellReference

getSheetName() - Method in class loci.poi.hssf.util.RangeAddress

getSheetName(int) - Method in class loci.poi.hssf.util.SheetReferences

getSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the length of the sheetname in characters

getSheetReferences() - Method in class loci.poi.hssf.model.Workbook

getShort(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a short value from a byte array

getShort(byte[]) - Static method in class loci.poi.util.LittleEndian

get a short value from the beginning of a byte array

getShortArray(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a short array from a byte array.

getShortDescription() - Method in interface loci.poi.poifs.dev.POIFSViewable

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.DocumentNode

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.property.Property

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its short value from an IIOMetadataNode.

getShortRawValue(short) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, unshifted

getShorts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShorts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShorts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShortValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getShortValue(short) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, appropriately shifted right, as a short.

getShowMetadataInfo() - Method in class loci.plugins.in.ImporterOptions

getShowOMEXMLInfo() - Method in class loci.plugins.in.ImporterOptions

getShowROIsInfo() - Method in class loci.plugins.in.ImporterOptions

getShrinkToFit() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to shrink the text to fit

getSid() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getSid() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

It's an aggregate...

getSid() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.AreaFormatRecord

getSid() - Method in class loci.poi.hssf.record.AreaRecord

getSid() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

getSid() - Method in class loci.poi.hssf.record.AxisOptionsRecord

getSid() - Method in class loci.poi.hssf.record.AxisParentRecord

getSid() - Method in class loci.poi.hssf.record.AxisRecord

getSid() - Method in class loci.poi.hssf.record.AxisUsedRecord

getSid() - Method in class loci.poi.hssf.record.BackupRecord

getSid() - Method in class loci.poi.hssf.record.BarRecord

getSid() - Method in class loci.poi.hssf.record.BeginRecord

getSid() - Method in class loci.poi.hssf.record.BlankRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.BOFRecord

getSid() - Method in class loci.poi.hssf.record.BookBoolRecord

getSid() - Method in class loci.poi.hssf.record.BoolErrRecord

getSid() - Method in class loci.poi.hssf.record.BottomMarginRecord

getSid() - Method in class loci.poi.hssf.record.BoundSheetRecord

getSid() - Method in class loci.poi.hssf.record.CalcCountRecord

getSid() - Method in class loci.poi.hssf.record.CalcModeRecord

getSid() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

getSid() - Method in class loci.poi.hssf.record.ChartFormatRecord

getSid() - Method in class loci.poi.hssf.record.ChartRecord

getSid() - Method in class loci.poi.hssf.record.CodepageRecord

getSid() - Method in class loci.poi.hssf.record.ColumnInfoRecord

getSid() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

getSid() - Method in class loci.poi.hssf.record.ContinueRecord

getSid() - Method in class loci.poi.hssf.record.CountryRecord

getSid() - Method in class loci.poi.hssf.record.DataFormatRecord

getSid() - Method in class loci.poi.hssf.record.DateWindow1904Record

getSid() - Method in class loci.poi.hssf.record.DatRecord

getSid() - Method in class loci.poi.hssf.record.DBCellRecord

getSid() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

getSid() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

getSid() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

getSid() - Method in class loci.poi.hssf.record.DeltaRecord

getSid() - Method in class loci.poi.hssf.record.DimensionsRecord

getSid() - Method in class loci.poi.hssf.record.DrawingGroupRecord

getSid() - Method in class loci.poi.hssf.record.DrawingRecord

getSid() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer

getSid() - Method in class loci.poi.hssf.record.DrawingSelectionRecord

getSid() - Method in class loci.poi.hssf.record.DSFRecord

getSid() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

getSid() - Method in class loci.poi.hssf.record.EndRecord

getSid() - Method in class loci.poi.hssf.record.EndSubRecord

getSid() - Method in class loci.poi.hssf.record.EOFRecord

getSid() - Method in class loci.poi.hssf.record.EscherAggregate

getSid() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

getSid() - Method in class loci.poi.hssf.record.ExternSheetRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getSid() - Method in class loci.poi.hssf.record.ExtSSTRecord

getSid() - Method in class loci.poi.hssf.record.FilePassRecord

getSid() - Method in class loci.poi.hssf.record.FileSharingRecord

getSid() - Method in class loci.poi.hssf.record.FnGroupCountRecord

getSid() - Method in class loci.poi.hssf.record.FontBasisRecord

getSid() - Method in class loci.poi.hssf.record.FontIndexRecord

getSid() - Method in class loci.poi.hssf.record.FontRecord

getSid() - Method in class loci.poi.hssf.record.FooterRecord

getSid() - Method in class loci.poi.hssf.record.FormatRecord

getSid() - Method in class loci.poi.hssf.record.FormulaRecord

getSid() - Method in class loci.poi.hssf.record.FrameRecord

getSid() - Method in class loci.poi.hssf.record.GridsetRecord

getSid() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

getSid() - Method in class loci.poi.hssf.record.GutsRecord

getSid() - Method in class loci.poi.hssf.record.HCenterRecord

getSid() - Method in class loci.poi.hssf.record.HeaderRecord

getSid() - Method in class loci.poi.hssf.record.HideObjRecord

getSid() - Method in class loci.poi.hssf.record.HorizontalPageBreakRecord

getSid() - Method in class loci.poi.hssf.record.IndexRecord

getSid() - Method in class loci.poi.hssf.record.InterfaceEndRecord

getSid() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

getSid() - Method in class loci.poi.hssf.record.IterationRecord

getSid() - Method in class loci.poi.hssf.record.LabelRecord

getSid() - Method in class loci.poi.hssf.record.LabelSSTRecord

getSid() - Method in class loci.poi.hssf.record.LeftMarginRecord

getSid() - Method in class loci.poi.hssf.record.LegendRecord

getSid() - Method in class loci.poi.hssf.record.LineFormatRecord

getSid() - Method in class loci.poi.hssf.record.LinkedDataRecord

getSid() - Method in class loci.poi.hssf.record.MergeCellsRecord

getSid() - Method in class loci.poi.hssf.record.MMSRecord

getSid() - Method in class loci.poi.hssf.record.MulBlankRecord

getSid() - Method in class loci.poi.hssf.record.MulRKRecord

getSid() - Method in class loci.poi.hssf.record.NameRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.NoteRecord

getSid() - Method in class loci.poi.hssf.record.NoteStructureSubRecord

getSid() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

getSid() - Method in class loci.poi.hssf.record.NumberRecord

getSid() - Method in class loci.poi.hssf.record.ObjectLinkRecord

getSid() - Method in class loci.poi.hssf.record.ObjectProtectRecord

getSid() - Method in class loci.poi.hssf.record.ObjRecord

getSid() - Method in class loci.poi.hssf.record.PageBreakRecord

getSid() - Method in class loci.poi.hssf.record.PaletteRecord

getSid() - Method in class loci.poi.hssf.record.PaneRecord

getSid() - Method in class loci.poi.hssf.record.PasswordRecord

getSid() - Method in class loci.poi.hssf.record.PasswordRev4Record

getSid() - Method in class loci.poi.hssf.record.PlotAreaRecord

getSid() - Method in class loci.poi.hssf.record.PlotGrowthRecord

getSid() - Method in class loci.poi.hssf.record.PrecisionRecord

getSid() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

getSid() - Method in class loci.poi.hssf.record.PrintHeadersRecord

getSid() - Method in class loci.poi.hssf.record.PrintSetupRecord

getSid() - Method in class loci.poi.hssf.record.ProtectionRev4Record

getSid() - Method in class loci.poi.hssf.record.ProtectRecord

getSid() - Method in class loci.poi.hssf.record.RecalcIdRecord

getSid() - Method in class loci.poi.hssf.record.Record

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.RecordInputStream

getSid() - Method in class loci.poi.hssf.record.RefModeRecord

getSid() - Method in class loci.poi.hssf.record.RefreshAllRecord

getSid() - Method in class loci.poi.hssf.record.RightMarginRecord

getSid() - Method in class loci.poi.hssf.record.RKRecord

getSid() - Method in class loci.poi.hssf.record.RowRecord

getSid() - Method in class loci.poi.hssf.record.SaveRecalcRecord

getSid() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

getSid() - Method in class loci.poi.hssf.record.SCLRecord

getSid() - Method in class loci.poi.hssf.record.SelectionRecord

getSid() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

getSid() - Method in class loci.poi.hssf.record.SeriesIndexRecord

getSid() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

getSid() - Method in class loci.poi.hssf.record.SeriesListRecord

getSid() - Method in class loci.poi.hssf.record.SeriesRecord

getSid() - Method in class loci.poi.hssf.record.SeriesTextRecord

getSid() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

getSid() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getSid() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

getSid() - Method in class loci.poi.hssf.record.SSTRecord

getSid() - Method in class loci.poi.hssf.record.StringRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.StyleRecord

getSid() - Method in class loci.poi.hssf.record.SupBookRecord

getSid() - Method in class loci.poi.hssf.record.TabIdRecord

getSid() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getSid() - Method in class loci.poi.hssf.record.TextRecord

getSid() - Method in class loci.poi.hssf.record.TickRecord

getSid() - Method in class loci.poi.hssf.record.TopMarginRecord

getSid() - Method in class loci.poi.hssf.record.UnicodeString

getSid() - Method in class loci.poi.hssf.record.UnitsRecord

getSid() - Method in class loci.poi.hssf.record.UnknownRecord

getSid() - Method in class loci.poi.hssf.record.UseSelFSRecord

getSid() - Method in class loci.poi.hssf.record.ValueRangeRecord

getSid() - Method in class loci.poi.hssf.record.VCenterRecord

getSid() - Method in class loci.poi.hssf.record.VerticalPageBreakRecord

getSid() - Method in class loci.poi.hssf.record.WindowOneRecord

getSid() - Method in class loci.poi.hssf.record.WindowProtectRecord

getSid() - Method in class loci.poi.hssf.record.WindowTwoRecord

getSid() - Method in class loci.poi.hssf.record.WriteAccessRecord

getSid() - Method in class loci.poi.hssf.record.WriteProtectRecord

getSid() - Method in class loci.poi.hssf.record.WSBoolRecord

getSignificantBits() - Method in class ome.xml.model.Pixels

getSimpleShortArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

get a short array from a byte array.

getSingleSection() - Method in class loci.poi.hpsf.PropertySet

If the PropertySet has only a single section this method returns it.

getSize(int) - Static method in class jj2000.j2k.image.DataBlk

Returns the size in bits, given the data type.

getSize() - Method in class jj2000.j2k.util.ThreadPool

Returns the size of the pool.

getSize(Image) - Static method in class loci.formats.gui.AWTImageTools

Gets the width and height of the given AWT image, waiting for it to finish loading if necessary.

getSize() - Method in class loci.plugins.util.BFVirtualStack

getSize() - Method in class loci.poi.ddf.EscherBSERecord

Blip size in stream.

getSize() - Method in class loci.poi.hpsf.MutableSection

Returns the section's size.

getSize() - Method in class loci.poi.hpsf.Property

Returns the property's size in bytes.

getSize() - Method in class loci.poi.hpsf.Section

Returns the section's size in bytes.

getSize() - Method in class loci.poi.hssf.model.Sheet

getSize() - Method in class loci.poi.hssf.model.Workbook

getSize() - Method in interface loci.poi.hssf.record.CustomField

getSize() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getSize() - Method in class loci.poi.hssf.record.formula.AddPtg

getSize() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getSize() - Method in class loci.poi.hssf.record.formula.AreaPtg

getSize() - Method in class loci.poi.hssf.record.formula.ArrayPtg

This size includes the size of the array Ptg plus the Array Ptg Token value size

getSize() - Method in class loci.poi.hssf.record.formula.AttrPtg

getSize() - Method in class loci.poi.hssf.record.formula.BoolPtg

getSize() - Method in class loci.poi.hssf.record.formula.ConcatPtg

getSize() - Method in class loci.poi.hssf.record.formula.DividePtg

getSize() - Method in class loci.poi.hssf.record.formula.EqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.ErrPtg

getSize() - Method in class loci.poi.hssf.record.formula.ExpPtg

getSize() - Method in class loci.poi.hssf.record.formula.FuncPtg

getSize() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

getSize() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the size of the sid

getSize() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

getSize() - Method in class loci.poi.hssf.record.formula.IntPtg

getSize() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the size of the sid

getSize() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getSize() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getSize() - Method in class loci.poi.hssf.record.formula.MissingArgPtg

getSize() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getSize() - Method in class loci.poi.hssf.record.formula.NamePtg

getSize() - Method in class loci.poi.hssf.record.formula.NameXPtg

getSize() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.NumberPtg

getSize() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getSize() - Method in class loci.poi.hssf.record.formula.PercentPtg

getSize() - Method in class loci.poi.hssf.record.formula.PowerPtg

getSize() - Method in class loci.poi.hssf.record.formula.Ptg

getSize() - Method in class loci.poi.hssf.record.formula.RangePtg

getSize() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getSize() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getSize() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

getSize() - Method in class loci.poi.hssf.record.formula.StringPtg

getSize() - Method in class loci.poi.hssf.record.formula.SubtractPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnionPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnknownPtg

getSize() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

getSize() - Method in interface loci.poi.poifs.filesystem.DocumentEntry

get the zize of the document, in bytes

getSize() - Method in class loci.poi.poifs.filesystem.DocumentNode

get the zize of the document, in bytes

getSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument

getSize() - Method in class loci.poi.poifs.property.Property

find out the document size

getSize() - Method in enum ome.jxr.ifd.IFDEntryType

getSize() - Method in class ome.xml.model.BinaryFile

getSizeC() - Method in class loci.formats.ChannelFiller

getSizeC() - Method in class loci.formats.DimensionSwapper

getSizeC() - Method in class loci.formats.FileStitcher

getSizeC() - Method in class loci.formats.FormatReader

getSizeC() - Method in interface loci.formats.IFormatReader

Gets the size of the C dimension.

getSizeC() - Method in class loci.formats.ImageReader

getSizeC() - Method in class loci.formats.in.FilePatternReader

getSizeC() - Method in class loci.formats.ReaderWrapper

getSizeC() - Method in interface loci.formats.services.WlzService

Gets number of channels.

getSizeC() - Method in class loci.formats.services.WlzServiceImpl

getSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeC() - Method in class loci.tests.testng.Configuration

getSizeC() - Method in class ome.xml.model.Pixels

getSizeEMU() - Method in class loci.poi.ddf.EscherMetafileBlip

getSizeEMU() - Method in class loci.poi.ddf.EscherPictBlip

getSizeOfElements() - Method in class loci.poi.ddf.EscherArrayProperty

getSizeOfType(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the number of bytes used to store a value of the given data type.

getSizeT() - Method in class loci.formats.DimensionSwapper

getSizeT() - Method in class loci.formats.FileStitcher

getSizeT() - Method in class loci.formats.FormatReader

getSizeT() - Method in interface loci.formats.IFormatReader

Gets the size of the T dimension.

getSizeT() - Method in class loci.formats.ImageReader

getSizeT() - Method in class loci.formats.in.FilePatternReader

getSizeT() - Method in class loci.formats.ReaderWrapper

getSizeT() - Method in interface loci.formats.services.WlzService

Gets number of time samples.

getSizeT() - Method in class loci.formats.services.WlzServiceImpl

getSizeT(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeT() - Method in class loci.tests.testng.Configuration

getSizeT() - Method in class ome.xml.model.Pixels

getSizeX() - Method in class loci.formats.DimensionSwapper

getSizeX() - Method in class loci.formats.FileStitcher

getSizeX() - Method in class loci.formats.FormatReader

getSizeX() - Method in interface loci.formats.IFormatReader

Gets the size of the X dimension.

getSizeX() - Method in class loci.formats.ImageReader

getSizeX() - Method in class loci.formats.in.FilePatternReader

getSizeX() - Method in class loci.formats.ReaderWrapper

getSizeX() - Method in interface loci.formats.services.WlzService

Gets width in pixels/voxels.

getSizeX() - Method in class loci.formats.services.WlzServiceImpl

getSizeX() - Method in class loci.formats.TileStitcher

getSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeX() - Method in class loci.tests.testng.Configuration

getSizeX() - Method in class ome.xml.model.Pixels

getSizeY() - Method in class loci.formats.DimensionSwapper

getSizeY() - Method in class loci.formats.FileStitcher

getSizeY() - Method in class loci.formats.FormatReader

getSizeY() - Method in interface loci.formats.IFormatReader

Gets the size of the Y dimension.

getSizeY() - Method in class loci.formats.ImageReader

getSizeY() - Method in class loci.formats.in.FilePatternReader

getSizeY() - Method in class loci.formats.ReaderWrapper

getSizeY() - Method in interface loci.formats.services.WlzService

Gets height in pixels/voxels.

getSizeY() - Method in class loci.formats.services.WlzServiceImpl

getSizeY() - Method in class loci.formats.TileStitcher

getSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeY() - Method in class loci.tests.testng.Configuration

getSizeY() - Method in class ome.xml.model.Pixels

getSizeZ() - Method in class loci.formats.DimensionSwapper

getSizeZ() - Method in class loci.formats.FileStitcher

getSizeZ() - Method in class loci.formats.FormatReader

getSizeZ() - Method in interface loci.formats.IFormatReader

Gets the size of the Z dimension.

getSizeZ() - Method in class loci.formats.ImageReader

getSizeZ() - Method in class loci.formats.in.FilePatternReader

getSizeZ() - Method in class loci.formats.ReaderWrapper

getSizeZ() - Method in interface loci.formats.services.WlzService

Gets depth (number of x-y planes) in voxels.

getSizeZ() - Method in class loci.formats.services.WlzServiceImpl

getSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeZ() - Method in class loci.tests.testng.Configuration

getSizeZ() - Method in class ome.xml.model.Pixels

getslice(int) - Method in class loci.formats.in.ZeissTIFFReader

getSlideCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the slide count or 0 if the DocumentSummaryInformation does not contain a slide count.

getSlopeFromSIndex(int) - Static method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Returns the minimum slope value associated with a summary table index.

getSmallBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

return the array of SmallDocumentBlocks used

getSmallDocumentBlocks(RawDataBlockList, RootProperty, int) - Static method in class loci.poi.poifs.storage.SmallBlockTableReader

fetch the small document block list from an existing file

getSnapshotPixels() - Method in class loci.plugins.util.RecordedImageProcessor

getSoftwareNameVersion() - Method in class ome.jxr.ifd.IFDMetadata

getSOP() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets SOP.

getSOP() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets SOP

getSort() - Method in class mdbtools.dbengine.sql.OrderBy

getSource() - Method in class loci.formats.cache.Cache

Gets the cache's caching source.

getSource() - Method in class loci.formats.cache.CacheEvent

Gets the source of the cache update.

getSources() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

getSources() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getSpacing() - Method in class loci.poi.hssf.record.LegendRecord

Get the spacing field for the Legend record.

getSpContainer() - Method in class loci.poi.hssf.model.AbstractShape

getSpContainer() - Method in class loci.poi.hssf.model.LineShape

getSpContainer() - Method in class loci.poi.hssf.model.PictureShape

getSpContainer() - Method in class loci.poi.hssf.model.PolygonShape

getSpContainer() - Method in class loci.poi.hssf.model.SimpleFilledShape

getSpContainer() - Method in class loci.poi.hssf.model.TextboxShape

getSpec(int, int) - Method in class jj2000.j2k.ModuleSpec

Gets value of specified tile-component without knowing if a specific tile-component value has been previously entered.

getSpecificationTitle() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return the Specification Title string for the package.

getSpecificBuiltinRecord(byte, int) - Method in class loci.poi.hssf.model.Workbook

Retrieves the Builtin NameRecord that matches the name and index There shouldn't be too many names to make the sequential search too slow

getSpecified() - Method in class jj2000.j2k.roi.MaxShiftSpec

getSpecified() - Method in class jj2000.j2k.StringSpec

getSpecifyRangesInfo() - Method in class loci.plugins.in.ImporterOptions

getSpectra() - Method in class loci.formats.in.IM3Reader

If a Nuance file is a spectral library set (.csl) file, there is a spectral library inside that contains a profile of spectral bin magnitudes for each of several measured fluorophores (or auto fluorescence).

getSpecValType(int, int) - Method in class jj2000.j2k.ModuleSpec

Return the spec type of the given tile-component.

getSpeeds() - Method in class loci.formats.in.ND2Handler

getSplitChannelsInfo() - Method in class loci.plugins.in.ImporterOptions

getSplitFocalPlanesInfo() - Method in class loci.plugins.in.ImporterOptions

getSplitTimepointsInfo() - Method in class loci.plugins.in.ImporterOptions

getSPWIndexes(int) - Method in class loci.formats.in.ScreenReader

getSrcColor(int, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getSSTIndex() - Method in class loci.poi.hssf.record.LabelSSTRecord

get the index to the string in the SSTRecord

getSSTString(int) - Method in class loci.poi.hssf.model.Workbook

given an index into the SST table, this function returns the corresponding String value

getSSTString(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

Do not call this method from your applications. Use the methods available in the HSSFRow to get string HSSFCells

getStackFormat() - Method in class loci.plugins.in.ImporterOptions

getStackFormatInfo() - Method in class loci.plugins.in.ImporterOptions

getStackFormats() - Method in class loci.plugins.in.ImporterOptions

getStackOrder() - Method in class loci.plugins.in.ImporterOptions

getStackOrder() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getStackOrderInfo() - Method in class loci.plugins.in.ImporterOptions

getStackOrders() - Method in class loci.plugins.in.ImporterOptions

getStackTrace(Throwable) - Static method in class loci.common.DebugTools

Extracts the given exception's corresponding stack trace to a string.

getStackType(String) - Method in class loci.formats.in.CellSensReader

getStageLabel() - Method in class loci.formats.in.MetamorphHandler

getStageLabel() - Method in class ome.xml.model.Image

getStageLabelName(int) - Method in class ome.xml.meta.AggregateMetadata

getStageLabelName(int) - Method in class ome.xml.meta.DummyMetadata

getStageLabelName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of StageLabel.

getStageLabelName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getStageLabelX(int) - Method in class ome.xml.meta.AggregateMetadata

getStageLabelX(int) - Method in class ome.xml.meta.DummyMetadata

getStageLabelX(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of StageLabel.

getStageLabelX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getStageLabelY(int) - Method in class ome.xml.meta.AggregateMetadata

getStageLabelY(int) - Method in class ome.xml.meta.DummyMetadata

getStageLabelY(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of StageLabel.

getStageLabelY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getStageLabelZ(int) - Method in class ome.xml.meta.AggregateMetadata

getStageLabelZ(int) - Method in class ome.xml.meta.DummyMetadata

getStageLabelZ(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Z property of StageLabel.

getStageLabelZ(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getStagePositionX() - Method in class loci.formats.in.MetamorphHandler

getStagePositionY() - Method in class loci.formats.in.MetamorphHandler

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStartBlock() - Method in class loci.poi.poifs.property.Property

getStartBlock() - Method in class loci.poi.poifs.property.PropertyTable

Get the start block for the property table

getStartBlock() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

get the starting block

getStartLevelROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets startLevel

getStartPos() - Method in class com.sun.media.imageio.stream.StreamSegment

Returns the starting position of the segment.

getStartRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the physical row number of the first row in a block

getStartTime() - Method in class ome.xml.model.PlateAcquisition

getStatistics(int, int, double, double) - Method in class loci.plugins.util.VirtualImagePlus

getStatus() - Method in class ome.xml.model.Plate

getStatusBarLength() - Method in class loci.poi.hssf.record.NameRecord

get the status bar text length

getStatusBarText() - Method in class loci.poi.hssf.record.NameRecord

gets the status bar text

getStatusMessage() - Method in class loci.common.StatusEvent

Gets status message.

getStep() - Method in class loci.formats.FilePattern

getStep() - Method in class loci.formats.FilePatternBlock

getStep(int) - Static method in enum loci.plugins.in.ImportStep

getStep() - Method in enum loci.plugins.in.ImportStep

getStepSize(Hashtable<String, Object>) - Method in class loci.formats.in.MINCReader

getStitchTilesInfo() - Method in class loci.plugins.in.ImporterOptions

getStorageClsid() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

Gets the storage clsid of the directory entry

getStorageClsid() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Gets the storage clsid of the directory entry

getStorageClsid() - Method in class loci.poi.poifs.property.Property

Sets the storage clsid, which is the Class ID of a COM object which reads and writes this stream

getStr() - Method in class loci.poi.hssf.record.TextObjectRecord

getStrategy() - Method in class loci.formats.cache.Cache

Gets the cache's caching strategy.

getStream() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the ImageOutputStream that will be written.

getStream(int) - Method in class loci.formats.in.VolocityReader

getStream() - Method in class loci.formats.in.ZeissCZIReader.Segment

getStream() - Method in class loci.formats.tiff.OnDemandLongArray

getStream() - Method in class loci.formats.tiff.TiffParser

Gets the stream from which TIFF data is being parsed.

getStream() - Method in class loci.formats.tiff.TiffSaver

Gets the stream from which TIFF data is being saved.

getStream() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

getStream() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getStreamId() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Gets the stream ID containing the actual data.

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getStreamMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getStreamPos() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getStreamPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getStreams() - Method in class loci.formats.tools.AmiraParameters

getStreamSegment(long, int) - Method in class com.sun.media.imageio.stream.SectorStreamSegmentMapper

getStreamSegment(long, int, StreamSegment) - Method in class com.sun.media.imageio.stream.SectorStreamSegmentMapper

getStreamSegment(long, int) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper

Returns a StreamSegment object indicating the location of the initial portion of a desired segment in the source stream.

getStreamSegment(long, int, StreamSegment) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper

Sets the values of a StreamSegment object indicating the location of the initial portion of a desired segment in the source stream.

getStreamSegment(long, int) - Method in class com.sun.media.imageio.stream.StreamSegmentMapperImpl

getStreamSegment(long, int, StreamSegment) - Method in class com.sun.media.imageio.stream.StreamSegmentMapperImpl

getStrikeout() - Method in class loci.poi.hssf.usermodel.HSSFFont

get whether to use a strikeout horizontal line through the text or not

getString(String) - Static method in class com.sun.media.imageio.plugins.bmp.I18N

getString(String) - Static method in class com.sun.media.imageio.stream.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.common.I18N

getString(String, String) - Static method in class com.sun.media.imageioimpl.common.I18NImpl

Returns the message string with the specified key from the "properties" file in the package containing the class with the specified name.

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.bmp.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.clib.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.png.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.pnm.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.raw.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.wbmp.I18N

getString(String) - Static method in class com.sun.media.jai.imageioimpl.I18N

getString(String) - Static method in class com.sun.media.jai.operator.I18N

getString(int) - Method in class loci.formats.in.LeicaReader

getString(boolean) - Method in class loci.formats.in.LeicaReader

getString(Integer) - Method in class loci.formats.in.VolocityReader

getString(int) - Method in class loci.poi.hssf.record.SSTRecord

Get a particular string by its index

getString() - Method in class loci.poi.hssf.record.StringRecord

getString() - Method in class loci.poi.hssf.record.UnicodeString

get the actual string this contains as a java String object

getString() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Returns the plain string representation.

getString() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getStringAttribute(Node, String, String, boolean, String[]) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getStringByteLength() - Method in class loci.poi.hssf.record.StringRecord

getStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.

Use the HSSFRichTextString return

getStringElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its String value from an IIOMetadataNode.

getStringLength() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getStringLength() - Method in class loci.poi.hssf.record.LabelRecord

get the number of characters this string contains

getStringOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the string option with the given key.

getStringRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getStrings() - Method in class loci.poi.hssf.record.SSTRecord

getStringValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStringValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock

getStringValue() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getStringWidth(String) - Method in class loci.plugins.util.RecordedImageProcessor

getStringWidth(String) - Method in class loci.poi.hssf.usermodel.FontDetails

Gets the width of all characters in a string.

getStripByteCounts() - Method in class loci.formats.tiff.IFD

Retrieves strip byte counts for the image (TIFF tag StripByteCounts) from this IFD.

getStripOffsets() - Method in class loci.formats.tiff.IFD

Retrieves the strip offsets for the image (TIFF tag StripOffsets) from this IFD.

getStripOrTileByteCountsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getStripOrTileOffsetsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getStroke() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getStroke() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getStrokeColor() - Method in class ome.xml.model.Shape

getStrokeDashArray() - Method in class ome.xml.model.Shape

getStrokeWidth() - Method in class ome.xml.model.Shape

getStrokeWidthUnitXsdDefault() - Static method in class ome.xml.model.Shape

getStructuredAnnotations() - Method in class ome.xml.model.BooleanAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.CommentAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.DoubleAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.FileAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.ListAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.LongAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.MapAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.OME

getStructuredAnnotations() - Method in class ome.xml.model.TagAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.TermAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.TimestampAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.XMLAnnotation

getStylesheet(String, Class<?>) - Static method in class loci.common.xml.XMLTools

Gets an XSLT template from the given resource location.

getSubband(int, int) - Method in class jj2000.j2k.wavelet.Subband

Returns a reference to the Subband element to which the specified point belongs.

getSubbandByIdx(int, int) - Method in class jj2000.j2k.wavelet.Subband

Returns a subband element in the tree, given its resolution level and subband index.

getSubbandRectROIMask(int, int) - Method in class jj2000.j2k.roi.encoder.SubbandROIMask

Returns a reference to the Subband mask element to which the specified point belongs.

getSubexpressionLength() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getSubimage(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Returns a subimage of the specified image.

getSubimage(byte[], byte[], int, int, int, int, int, int, int, int, boolean) - Static method in class loci.formats.ImageTools

getSubject() - Method in class loci.poi.hpsf.SummaryInformation

Returns the subject (or null).

getSubRecords() - Method in class loci.poi.hssf.record.ObjRecord

getSubsamp() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the level of chrominance subsampling used in the JPEG image associated with this decompressor instance.

getSuffix() - Method in class loci.formats.FilePattern

Gets the pattern's text string after all numerical ranges.

getSuffixes() - Method in class loci.formats.FormatHandler

getSuffixes() - Method in interface loci.formats.IFormatHandler

Gets the default file suffixes for this file format.

getSuffixes() - Method in class loci.formats.ImageReader

getSuffixes() - Method in class loci.formats.ImageWriter

getSuffixes() - Method in class loci.formats.ReaderWrapper

getSuffixes() - Method in class loci.formats.WriterWrapper

getSummaryInformation() - Method in class loci.poi.POIDocument

Fetch the Summary Information of the document

getSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

getSupbookpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the supbookpos.

getSuperSubScript() - Method in class loci.poi.hssf.record.FontRecord

get the type of super or subscript for the font

getSupPixelTypes() - Method in interface loci.formats.services.WlzService

Gets supported pixel types.

getSupPixelTypes() - Method in class loci.formats.services.WlzServiceImpl

getSupportedMetadataLevels() - Method in class loci.formats.DelegateReader

getSupportedMetadataLevels() - Method in class loci.formats.FormatReader

getSupportedMetadataLevels() - Method in class loci.formats.ImageReader

getSupportedMetadataLevels() - Method in interface loci.formats.IMetadataConfigurable

getSupportedMetadataLevels() - Method in class loci.formats.ReaderWrapper

getSwapDimensionsInfo() - Method in class loci.plugins.in.ImporterOptions

getSymbol() - Method in class ome.units.unit.Unit

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the high-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the low-pass synthesis filter.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the specified synthesis subband tree

getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the specified synthesis subband tree

getT() - Method in class loci.formats.gui.ImageViewer

Gets the T value of the currently displayed image.

getTabIdArray() - Method in class loci.poi.hssf.record.TabIdRecord

get the tab array.

getTable(String) - Method in class loci.common.IniList

Gets the table with the given name (header).

getTable(int) - Method in interface mdbtools.dbengine.DataSource

getTable() - Method in class mdbtools.dbengine.sql.FQColumn

getTable(int) - Method in class mdbtools.dbengine.sql.Select

getTable(int) - Method in class mdbtools.dbengine.Tests.SimpleDataSource

getTableCount() - Method in interface loci.formats.services.MetakitService

getTableCount() - Method in class loci.formats.services.MetakitServiceImpl

getTableCount() - Method in interface mdbtools.dbengine.DataSource

getTableCount() - Method in class mdbtools.dbengine.sql.Select

getTableCount() - Method in class mdbtools.dbengine.Tests.SimpleDataSource

getTableCount() - Method in class ome.metakit.MetakitReader

Retrieve the number of tables in this database file.

getTableData(String) - Method in interface loci.formats.services.MetakitService

getTableData(int) - Method in interface loci.formats.services.MetakitService

getTableData(String) - Method in class loci.formats.services.MetakitServiceImpl

getTableData(int) - Method in class loci.formats.services.MetakitServiceImpl

getTableData(int) - Method in class ome.metakit.MetakitReader

Retrieve all of the tabular data for the table with the given index.

getTableData(String) - Method in class ome.metakit.MetakitReader

Retrieve all of the tabular data for the named table.

getTableNames() - Method in interface loci.formats.services.MetakitService

getTableNames() - Method in class loci.formats.services.MetakitServiceImpl

getTableNames() - Method in class ome.metakit.MetakitReader

Retrieve the name of every table in this database file.

getTabpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getTabWidthRatio() - Method in class loci.poi.hssf.record.WindowOneRecord

ratio of the width of the tabs to the horizontal scrollbar

getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the TIFFTag which has tag number equal to tagNumber or null if no such tag exists in the TIFFTagSets associated with this directory.

getTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Retrieves the tag associated with this field.

getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Returns the TIFFTag from this set that is associated with the given tag number, or null if no tag exists for that number.

getTag(String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Returns the TIFFTag having the given tag name, or null if the named tag does not belong to this tag set.

getTag(int, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getTag(String, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getTag() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's Tag value.

getTag() - Method in class loci.poi.ddf.EscherBSERecord

unused

getTag() - Method in enum ome.jxr.ifd.IFDEntry

getTagAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getTagAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a TagAnnotation.

getTagAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of TagAnnotation.

getTagAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of TagAnnotation.

getTagAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of TagAnnotation elements.

getTagAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of TagAnnotation.

getTagAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of TagAnnotation.

getTagAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of TagAnnotation.

getTagAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of TagAnnotation.

getTagAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagName(int) - Method in class loci.formats.in.CellSensReader

getTagNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Retrieves an unmodifiable lexicographically increasing set of tag names.

getTagNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Retrieves the tag number in the range [0, 65535].

getTagNumbers() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Retrieves an unmodifiable numerically increasing set of tag numbers.

getTags() - Method in interface loci.formats.services.EXIFService

getTags() - Method in class loci.formats.services.EXIFServiceImpl

getTagSet() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the TIFFTagSet of which this tag is a part.

getTagSetList() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the TIFFTagSets of which this directory is aware.

getTargetBitrate(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the target bitrate of the optmimization point 'n'.

getTargetNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the target number of read bytes.

getTargetRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the target decoding rate in bits per pixel.

getTBegin(int) - Method in class loci.plugins.in.ImporterOptions

getTBegin(int) - Method in class loci.plugins.in.ImportProcess

getTCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getTemperature() - Method in class loci.formats.in.MetamorphHandler

getTemperature() - Method in class ome.xml.model.ImagingEnvironment

getTemperatures() - Method in class loci.formats.in.ND2Handler

getTemperatureUnitXsdDefault() - Static method in class ome.xml.model.ImagingEnvironment

getTemplate() - Method in class loci.poi.hpsf.SummaryInformation

Returns the template (or null).

getTEnd(int) - Method in class loci.plugins.in.ImporterOptions

getTEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getTermAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getTermAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a TermAnnotation.

getTermAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of TermAnnotation.

getTermAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of TermAnnotation.

getTermAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of TermAnnotation elements.

getTermAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of TermAnnotation.

getTermAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of TermAnnotation.

getTermAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of TermAnnotation.

getTermAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of TermAnnotation.

getTermAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTerminateOnByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets terminateOnByte

getTestImageReader() - Static method in class loci.tests.testng.TestTools

Return an ImageReader that is appropriate for testing.

getText() - Method in class loci.poi.hssf.extractor.ExcelExtractor

Retreives the text contents of the file

getText() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the text field for the SeriesText record.

getText() - Method in class loci.poi.POITextExtractor

Retrieves all the text from the document.

getText() - Method in class ome.xml.model.Shape

getTextFooter() - Static method in class loci.formats.tools.PrintFormatTable

getTextFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getTextHeader() - Static method in class loci.formats.tools.PrintFormatTable

getTextLength() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the text length field for the SeriesText record.

getTextLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the text length field for the TextObjectBase record.

getTextObjectRecord() - Method in class loci.poi.hssf.model.TextboxShape

getTextOrientation() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the text orientation field for the TextObjectBase record.

getTextRotation() - Method in class loci.poi.hssf.record.TextRecord

Get the text rotation field for the Text record.

getTextsLength() - Method in class loci.poi.hssf.record.NameRecord

gets the length of all texts

getTFrames(int) - Method in class loci.formats.in.LegacyND2Reader

getTheC() - Method in class ome.xml.model.Plane

getTheC() - Method in class ome.xml.model.Shape

getTheT() - Method in class ome.xml.model.Plane

getTheT() - Method in class ome.xml.model.Shape

getTheZ() - Method in class ome.xml.model.Plane

getTheZ() - Method in class ome.xml.model.Shape

getThreadConcurrency() - Static method in class jj2000.j2k.util.NativeServices

Returns the current concurrency level.

getThreadConcurrencyN() - Static method in class jj2000.j2k.util.NativeServices

Calls the POSIX threads 'pthread_getconcurrency', or equivalent, function and return the result.

getThumbnail() - Method in class loci.poi.hpsf.SummaryInformation

Returns the thumbnail (or null) when this method is implemented.

getThumbnail() - Method in class loci.poi.hpsf.Thumbnail

Returns the thumbnail as a byte[] in VT_CF format.

getThumbnailAsWMF() - Method in class loci.poi.hpsf.Thumbnail

Returns the Thumbnail as a byte[] of WMF data if the Thumbnail's Clipboard Format Tag is CFTAG_WINDOWS and its Clipboard Format is CF_METAFILEPICT

getThumbnailIFDs() - Method in class loci.formats.in.MinimalTiffReader

Gets the list of IFDs associated with the current TIFF's thumbnails.

getThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser

Returns thumbnail IFDs.

getThumbSizeX() - Method in class loci.formats.FileStitcher

getThumbSizeX() - Method in class loci.formats.FormatReader

getThumbSizeX() - Method in interface loci.formats.IFormatReader

Get the size of the X dimension for the thumbnail.

getThumbSizeX() - Method in class loci.formats.ImageReader

getThumbSizeX() - Method in class loci.formats.in.FilePatternReader

getThumbSizeX() - Method in class loci.formats.in.LeicaSCNReader

getThumbSizeX() - Method in class loci.formats.in.MinimalTiffReader

getThumbSizeX() - Method in class loci.formats.ReaderWrapper

getThumbSizeX() - Method in class loci.tests.testng.Configuration

getThumbSizeY() - Method in class loci.formats.FileStitcher

getThumbSizeY() - Method in class loci.formats.FormatReader

getThumbSizeY() - Method in interface loci.formats.IFormatReader

Get the size of the Y dimension for the thumbnail.

getThumbSizeY() - Method in class loci.formats.ImageReader

getThumbSizeY() - Method in class loci.formats.in.FilePatternReader

getThumbSizeY() - Method in class loci.formats.in.LeicaSCNReader

getThumbSizeY() - Method in class loci.formats.in.MinimalTiffReader

getThumbSizeY() - Method in class loci.formats.ReaderWrapper

getThumbSizeY() - Method in class loci.tests.testng.Configuration

getTickColor() - Method in class loci.poi.hssf.record.TickRecord

Get the tick color field for the Tick record.

getTickMarkFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the tick mark frequency field for the CategorySeriesAxis record.

getTIFFCompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the TIFFCompressor that is currently set to be used by the ImageWriter to encode each image strip or tile, or null if none has been set.

getTiffData(int) - Method in class ome.xml.model.Pixels

getTiffDataCount(int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataCount(int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of TiffData elements.

getTiffDataCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataFirstC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataFirstC(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataFirstC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FirstC property of TiffData.

getTiffDataFirstC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataFirstT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataFirstT(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataFirstT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FirstT property of TiffData.

getTiffDataFirstT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataFirstZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataFirstZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataFirstZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FirstZ property of TiffData.

getTiffDataFirstZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataIFD(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataIFD(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataIFD(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the IFD property of TiffData.

getTiffDataIFD(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataPlaneCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataPlaneCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataPlaneCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PlaneCount property of TiffData.

getTiffDataPlaneCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTIFFDecompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns the TIFFDecompressor that is currently set to be used by the ImageReader to decode each image strip or tile, or null if none has been set.

getTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Retrieves a TIFF field from the directory.

getTIFFField(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Retrieves all TIFF fields from the directory.

getTiffFiles(String, char, int, int, int) - Method in class loci.formats.in.CellWorxReader

getTIFFList() - Method in class loci.formats.in.LeicaReader

getTiffs() - Method in class loci.formats.in.BDReader

getTile(int, int) - Method in class com.sun.media.imageioimpl.common.SingleTileRenderedImage

Returns the image's Raster as tile (0, 0).

getTile(int, int, WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

getTile(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the coordinates of the current tile.

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.EmptyImage

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTile(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the indexes of the current tile.

getTile(Point) - Method in interface jj2000.j2k.image.ImgData

Returns the indixes of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the indexes of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the coordinates of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.input.ImgReader

Returns the coordinates of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.Tiler

Returns the horizontal and vertical indexes of the current tile.

getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the indixes of the current tile.

getTile(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the indexes of the current tile.

getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the indexes of the current tile.

getTile(int, int, int, int, Region) - Method in class loci.formats.in.MIASReader

getTile(byte[], int, int, int, int) - Method in interface loci.formats.services.JPEGTurboService

getTile(int, int) - Method in interface loci.formats.services.JPEGTurboService

getTile(byte[], int, int, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl

getTile(int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl

getTile(IFD, byte[], int, int) - Method in class loci.formats.tiff.TiffParser

getTile0Rect() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Returns the bounding rectangle of the upper left tile at the current resolution level.

getTileAlternateMD5() - Method in class loci.tests.testng.Configuration

getTileCompHeight(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTileCompHeight(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the height in pixels of the specified tile-component for the given (tile-component) resolution level.

getTileCompHeight(int, int) - Method in interface jj2000.j2k.image.ImgData

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.Tiler

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the height in pixels of the specified tile-component for the given resolution level.

getTileCompHeight(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the height in pixels of the specified tile-component for the given resolution level.

getTileCompVal(int, int) - Method in class jj2000.j2k.ModuleSpec

Gets value of specified tile-component.

getTileCompWidth(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTileCompWidth(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the width in pixels of the specified tile-component for the given (tile-component) resolution level.

getTileCompWidth(int, int) - Method in interface jj2000.j2k.image.ImgData

Returns the width in pixels of the specified tile-component

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the width in pixels of the specified tile-component tile.

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the width in pixels of the specified tile-component

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the width in pixels of the specified tile-component.

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.Tiler

Returns the width in pixels of the specified tile-component.

getTileCompWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the width in pixels of the specified tile-component

getTileCompWidth(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the width in pixels of the specified tile-component for the given resolution level.

getTileCompWidth(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the width in pixels of the specified tile-component for the given resolution level.

getTileDef(int) - Method in class jj2000.j2k.ModuleSpec

Gets default value of the specified tile.

getTileFilename(int, int, int, String) - Static method in class loci.formats.FormatTools

getTileGridXOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the upper-left pixel of tile (0, 0).

getTileGridXOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTileGridYOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the Y coordinate of the upper-left pixel of tile (0, 0).

getTileGridYOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTileHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the height of a tile.

getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall height of the current tile in pixels.

getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTileHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall height of the current tile in pixels, for the given resolution level.

getTileHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall height of the current tile in pixels, assuming there is no-tiling.

getTileHeight() - Method in class jj2000.j2k.image.Tiler

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall height of the current tile in pixels.

getTileHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall height of the current tile in pixels, for the given resolution level.

getTileHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall height of the current tile in pixels, for the given resolution level.

getTileIdx() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in interface jj2000.j2k.image.ImgData

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.image.input.ImgReader

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.image.Tiler

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the index of the current tile, relative to a standard scan-line order.

getTileIndex(int) - Method in class loci.formats.in.LIFReader

getTileLength() - Method in class loci.formats.tiff.IFD

Returns the length of an image tile.

getTileMD5() - Method in class loci.tests.testng.Configuration

getTileNum(int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

getTileOff(Point, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal and vertical offset of the upper-left corner of the current tile, in the specified component, relative to the canvas origin, in the component coordinates (not in the reference grid coordinates).

getTileOrStripByteCount(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getTileOrStripHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getTileOrStripOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getTileOrStripWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getTilePartULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTilePartULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal offset of tile partition

getTilePartULX() - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.Tiler

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal tile partition offset in the reference grid

getTilePartULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTilePartULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical offset of tile partition

getTilePartULY() - Method in interface jj2000.j2k.image.ImgData

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical tile offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.Tiler

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical tile partition offset in the reference grid

getTileSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getTileSize() - Method in class loci.formats.in.CellSensReader

getTilesPerColumn() - Method in class loci.formats.tiff.IFD

Returns the number of image tiles per column.

getTilesPerRow() - Method in class loci.formats.tiff.IFD

Returns the number of image tiles per row.

getTileWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the width of a tile.

getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width of the current tile in pixels.

getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTileWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall width of the current tile in pixels for the given (tile) resolution level.

getTileWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the width of the current tile in pixels, assuming there is no-tiling.

getTileWidth() - Method in class jj2000.j2k.image.Tiler

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall width of the current tile in pixels.

getTileWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall width of the current tile in pixels for the given resolution level.

getTileWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall width of the current tile in pixels, for the given resolution level.

getTileWidth() - Method in class loci.formats.tiff.IFD

Returns the width of an image tile.

getTilingOrigin(Point) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the tiling origin, referred to as '(Px,Py)' in the 'ImgData' interface.

getTilingOrigin(Point) - Method in class jj2000.j2k.image.Tiler

Returns the tiling origin, referred to as '(xt0siz,yt0siz)' in the codestream header (SIZ marker segment).

getTime(String, String) - Static method in class loci.common.DateTools

Converts a string date in the given format to a long timestamp (in Unix format: milliseconds since January 1, 1970).

getTime(String, String, String) - Static method in class loci.common.DateTools

Converts a string date in the given format to a long timestamp (in Unix format: milliseconds since January 1, 1970) with special milliseconds handling.

getTime(Double, String) - Static method in class loci.formats.FormatTools

Formats the input value for the time into a length of the given unit.

getTimeBinCount() - Method in class loci.formats.in.SDTReader

Gets the number of bins in the lifetime histogram.

getTimeIncrement() - Method in class loci.tests.testng.Configuration

getTimeIncrement() - Method in class ome.xml.model.Pixels

getTimeIncrementUnitXsdDefault() - Static method in class ome.xml.model.Pixels

getTimepoint(int) - Method in class loci.formats.in.ZeissTIFFReader

getTimepoint() - Method in class ome.xml.model.WellSample

getTimepoints() - Method in class loci.formats.in.ND2Handler

getTimestamp() - Static method in class loci.common.DateTools

Returns a timestamp for the current timezone in a human-readable locale-independent format ("YYYY-MM-DD HH:MM:SS")

getTimestamp(String) - Method in class loci.formats.in.BDReader

getTimestamp(String) - Method in class loci.formats.in.SlidebookTiffReader

getTimestampAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getTimestampAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getTimestampAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getTimestampAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a TimestampAnnotation.

getTimestampAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTimestampAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTimestampAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getTimestampAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of TimestampAnnotation.

getTimestampAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTimestampAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getTimestampAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getTimestampAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of TimestampAnnotation.

getTimestampAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTimestampAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getTimestampAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getTimestampAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of TimestampAnnotation elements.

getTimestampAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTimestampAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getTimestampAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getTimestampAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of TimestampAnnotation.

getTimestampAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTimestampAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getTimestampAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getTimestampAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of TimestampAnnotation.

getTimestampAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTimestampAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getTimestampAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getTimestampAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of TimestampAnnotation.

getTimestampAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTimestampAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getTimestampAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getTimestampAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of TimestampAnnotation.

getTimestampAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTimestampIndex(String) - Method in class loci.formats.in.PCIReader

getTimestamps() - Method in class loci.formats.in.MetamorphHandler

getTiming(int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

Returns the wall time spent by this compressor for component 'c' since the last call to this method (or the creation of this compressor if not yet called).

getTitle() - Method in class loci.poi.hpsf.SummaryInformation

Returns the title (or null).

getToCell() - Method in class loci.poi.hssf.util.RangeAddress

getTopBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the top border

getTopBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the top border

getTopColGutter() - Method in class loci.poi.hssf.record.GutsRecord

get the size of the gutter that appears at the above the columns

getTopRow() - Method in class loci.poi.hssf.model.Sheet

getTopRow() - Method in class loci.poi.hssf.record.PaneRecord

Get the top row field for the Pane record.

getTopRow() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the top row visible in the window

getTopRow() - Method in class loci.poi.hssf.usermodel.HSSFSheet

The top row in the visible view when the sheet is first viewed after opening it in a viewer

getTotalOffset(int, int, int) - Method in class loci.formats.in.DeltavisionReader

Given any specific Z, W, and T of a plane, determine the totalOffset from the start of the extended header.

getTotalPtgSize() - Method in class loci.poi.hssf.record.FormulaRecord

getTotBitrate() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the overall target bitrate for the entire bit stream.

getTotNumLayers() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the total number of layers, according to the layer specification of this object and the overall target bitrate.

getTrans() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getTransform() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getTransform() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getTransform() - Method in class ome.xml.model.Shape

getTransformedSizes() - Method in class org.libjpegturbo.turbojpeg.TJTransformer

Returns an array containing the sizes of the transformed JPEG images from the most recent call to transform().

getTransmittance() - Method in class ome.xml.model.TransmittanceRange

getTransmittanceRange() - Method in class ome.xml.model.Filter

getTransmittanceRangeCutIn(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTransmittanceRangeCutIn(int, int) - Method in class ome.xml.meta.DummyMetadata

getTransmittanceRangeCutIn(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CutIn property of TransmittanceRange.

getTransmittanceRangeCutIn(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTransmittanceRangeCutInTolerance(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTransmittanceRangeCutInTolerance(int, int) - Method in class ome.xml.meta.DummyMetadata

getTransmittanceRangeCutInTolerance(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CutInTolerance property of TransmittanceRange.

getTransmittanceRangeCutInTolerance(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTransmittanceRangeCutOut(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTransmittanceRangeCutOut(int, int) - Method in class ome.xml.meta.DummyMetadata

getTransmittanceRangeCutOut(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CutOut property of TransmittanceRange.

getTransmittanceRangeCutOut(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTransmittanceRangeCutOutTolerance(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTransmittanceRangeCutOutTolerance(int, int) - Method in class ome.xml.meta.DummyMetadata

getTransmittanceRangeCutOutTolerance(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CutOutTolerance property of TransmittanceRange.

getTransmittanceRangeCutOutTolerance(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTransmittanceRangeTransmittance(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTransmittanceRangeTransmittance(int, int) - Method in class ome.xml.meta.DummyMetadata

getTransmittanceRangeTransmittance(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transmittance property of TransmittanceRange.

getTransmittanceRangeTransmittance(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTransparency(String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class loci.formats.gui.XMLCellRenderer

getTriplet() - Method in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.AQUA

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLACK

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BROWN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.CORAL

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GOLD

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIME

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.MAROON

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PINK

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PLUM

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.RED

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ROSE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TAN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TEAL

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.WHITE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW

getTripletHash() - Static method in class loci.poi.hssf.util.HSSFColor

this function returns all colors in a hastable.

getTStep(int) - Method in class loci.plugins.in.ImporterOptions

getTStep(int) - Method in class loci.plugins.in.ImportProcess

getTuneable() - Method in class ome.xml.model.Laser

getType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the type of the data stored in the field.

getType(int) - Static method in class com.sun.media.imageioimpl.common.BogusColorSpace

Return the type given the number of components.

getType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box type.

getType() - Method in class loci.formats.cache.CacheEvent

Gets the type of cache update.

getType() - Method in class loci.formats.gui.TwoChannelColorSpace

getType() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the type associated with this Sequence.

getType() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's Type value.

getType() - Method in class loci.poi.ddf.EscherPropertyMetaData

getType() - Method in class loci.poi.hpsf.Property

Returns the property's type.

getType() - Method in class loci.poi.hssf.record.BOFRecord

type of object this marks

getType() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getType() - Method in class loci.poi.hssf.record.formula.AddPtg

getType() - Method in class loci.poi.hssf.record.formula.AttrPtg

getType() - Method in class loci.poi.hssf.record.formula.ConcatPtg

getType() - Method in class loci.poi.hssf.record.formula.DividePtg

getType() - Method in class loci.poi.hssf.record.formula.EqualPtg

getType() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

getType() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the type of PTG for Greater Than

getType() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

getType() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

getType() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the type of PTG for Less Than

getType() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getType() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

getType() - Method in class loci.poi.hssf.record.formula.OperationPtg

getType() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getType() - Method in class loci.poi.hssf.record.formula.PercentPtg

getType() - Method in class loci.poi.hssf.record.formula.PowerPtg

getType() - Method in class loci.poi.hssf.record.formula.RangePtg

getType() - Method in class loci.poi.hssf.record.formula.SubtractPtg

getType() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getType() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getType() - Method in class loci.poi.hssf.record.formula.UnionPtg

getType() - Method in class loci.poi.hssf.record.LegendRecord

Get the type field for the Legend record.

getType() - Method in class loci.poi.hssf.record.StyleRecord

get the type of the style (builtin or user-defined)

getType() - Method in class mdbtools.dbengine.sql.Join

getType() - Method in class ome.metakit.Column

Retrieve the Class corresponding to the column's type.

getType() - Method in class ome.xml.model.Arc

getType() - Method in class ome.xml.model.Detector

getType() - Method in class ome.xml.model.Experiment

getType() - Method in class ome.xml.model.Filament

getType() - Method in class ome.xml.model.Filter

getType() - Method in class ome.xml.model.Laser

getType() - Method in class ome.xml.model.MicrobeamManipulation

getType() - Method in class ome.xml.model.Microscope

getType() - Method in class ome.xml.model.Pixels

getType() - Method in class ome.xml.model.Screen

getType() - Method in class ome.xml.model.Well

getTypeByName(String) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the data type constant corresponding to the supplied data type name.

getTypeByName(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the type String based on the provided name.

getTypeCode() - Method in enum ome.jxr.ifd.IFDEntryType

getTypeInt(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Converts the box type from integer to string.

getTypeName(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the name of the supplied data type constant.

getTypeOffset() - Method in class loci.poi.hssf.usermodel.HSSFFont

get normal,super or subscript.

getTypes() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the channel types.

getTypeString(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Converts the box type from integer to string.

getTypeString() - Method in class ome.metakit.Column

Retrieve a string representation of the type.

getUID() - Method in class loci.poi.ddf.EscherBitmapBlip

getUid() - Method in class loci.poi.ddf.EscherBSERecord

16 byte MD4 checksum.

getUID() - Method in class loci.poi.ddf.EscherMetafileBlip

getUID() - Method in class loci.poi.ddf.EscherPictBlip

getUInt(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an unsigned int value from a byte array

getUInt(byte[]) - Static method in class loci.poi.util.LittleEndian

get an unsigned int value from a byte array

getULong(byte[], int) - Static method in class loci.poi.util.LittleEndian

Gets an unsigned int value (8 bytes) from a byte array.

getUncompressedSize() - Method in class loci.poi.ddf.EscherMetafileBlip

getUncompressedSize() - Method in class loci.poi.ddf.EscherPictBlip

getUnderline() - Method in class loci.poi.hssf.record.FontRecord

get the type of underlining for the font

getUnderline() - Method in class loci.poi.hssf.usermodel.HSSFFont

get type of text underlining to use

getUnderlyingReaders() - Method in class loci.formats.FileStitcher

getUnderlyingReaders() - Method in class loci.formats.FormatReader

getUnderlyingReaders() - Method in interface loci.formats.IFormatReader

Retrieves all underlying readers.

getUnderlyingReaders() - Method in class loci.formats.ImageReader

getUnderlyingReaders() - Method in class loci.formats.in.FilePatternReader

getUnderlyingReaders() - Method in class loci.formats.ReaderWrapper

getUndocumented() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the undocumented field for the SeriesText record.

getUngroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions

getUnicodeFlag() - Method in class loci.poi.hssf.record.FormatRecord

get whether the string is unicode

getUnicodeString(int) - Method in class loci.poi.hssf.record.SSTSerializer

getUnicodeString(IntMapper, int) - Static method in class loci.poi.hssf.record.SSTSerializer

getUnicodeString() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Used internally by the HSSFCell to get the internal string value

getUnion() - Method in class ome.xml.model.ROI

getUnion() - Method in class ome.xml.model.Shape

getUnits() - Method in class loci.poi.hssf.record.UnitsRecord

Get the units field for the Units record.

getUniverse() - Method in class loci.formats.gui.LegacyQTTools

Gets QuickTime for Java reflected universe.

getUnknown() - Method in class loci.poi.hssf.record.FileSharingRecord

getUnknownColorspace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the UnknowColorspace flag.

getUnpackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Returns the binary data unpacked into an array of bytes.

getUnsignedByte(byte[], int) - Static method in class loci.poi.util.LittleEndian

get the unsigned value of a byte.

getUnsignedByte(byte[]) - Static method in class loci.poi.util.LittleEndian

get the unsigned value of a byte.

getUnused() - Method in class loci.poi.hssf.record.NameRecord

gets the index to extern sheet

getUnused2() - Method in class loci.poi.ddf.EscherBSERecord

getUnused3() - Method in class loci.poi.ddf.EscherBSERecord

getUpgradeCheckInfo() - Method in class loci.plugins.in.ImporterOptions

getURL() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the URL data element.

getUsage() - Method in class loci.poi.ddf.EscherBSERecord

Defines the way this blip is used.

getUsedFile(Double, String[]) - Method in class loci.plugins.macro.LociFunctions

getUsedFileCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getUsedFiles() - Method in class loci.formats.FileStitcher

getUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getUsedFiles() - Method in class loci.formats.FormatReader

getUsedFiles(boolean) - Method in class loci.formats.FormatReader

getUsedFiles() - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open this dataset.

getUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open this dataset.

getUsedFiles() - Method in class loci.formats.ImageReader

getUsedFiles(boolean) - Method in class loci.formats.ImageReader

getUsedFiles(boolean) - Method in class loci.formats.in.FilePatternReader

getUsedFiles(boolean) - Method in class loci.formats.in.InveonReader

getUsedFiles(boolean) - Method in class loci.formats.in.MetamorphTiffReader

getUsedFiles(boolean) - Method in class loci.formats.in.UnisokuReader

getUsedFiles() - Method in class loci.formats.ReaderWrapper

getUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getUsedMemory() - Static method in class loci.tests.testng.TestTools

Gets the quantity of used memory, in MB.

getUsePage() - Method in class loci.poi.hssf.record.PrintSetupRecord

getUsePage() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the use page numbers.

getUsername() - Method in class loci.poi.hssf.record.FileSharingRecord

getUsername() - Method in class loci.poi.hssf.record.WriteAccessRecord

get the username for the user that created the report.

getUserName() - Method in class ome.xml.model.Experimenter

getUsernameLength() - Method in class loci.poi.hssf.record.FileSharingRecord

getUShort(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an unsigned short value from a byte array

getUShort(byte[]) - Static method in class loci.poi.util.LittleEndian

get an unsigned short value from the beginning of a byte array

getUUID() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Returns the UUID of this box.

getUUID(String) - Method in class loci.formats.in.ImprovisionTiffReader

getUUID(String) - Method in class loci.formats.out.OMETiffWriter

Gets the UUID corresponding to the given filename.

getUUID() - Method in class ome.xml.meta.AggregateMetadata

Gets the UUID associated with this collection of metadata.

getUUID() - Method in class ome.xml.meta.DummyMetadata

Gets the UUID associated with this collection of metadata.

getUUID() - Method in interface ome.xml.meta.MetadataRetrieve

Gets the UUID associated with this collection of metadata.

getUUID() - Method in class ome.xml.meta.OMEXMLMetadataImpl

Gets the UUID associated with this collection of metadata.

getUUID() - Method in class ome.xml.model.BinaryOnly

getUUID() - Method in class ome.xml.model.OME

getUUID() - Method in class ome.xml.model.TiffData

getUUIDFileName(int, int) - Method in class ome.xml.meta.AggregateMetadata

getUUIDFileName(int, int) - Method in class ome.xml.meta.DummyMetadata

getUUIDFileName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FileName property of UUID.

getUUIDFileName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getUUIDValue(int, int) - Method in class ome.xml.meta.AggregateMetadata

getUUIDValue(int, int) - Method in class ome.xml.meta.DummyMetadata

getUUIDValue(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the text value of UUID.

getUUIDValue(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getValidSettings() - Method in class loci.poi.hssf.record.PrintSetupRecord

getValidSettings() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the valid settings.

getValue(int, int) - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the current value of the specified element in the tag tree.

getValue() - Method in enum loci.formats.in.BaseZeissReader.Charset

getValue() - Method in enum loci.formats.in.BaseZeissReader.DrawStyle

getValue() - Method in enum loci.formats.in.BaseZeissReader.FeatureType

getValue() - Method in enum loci.formats.in.BaseZeissReader.FillStyle

getValue() - Method in enum loci.formats.in.BaseZeissReader.LineEndPositions

getValue() - Method in enum loci.formats.in.BaseZeissReader.LineEndStyle

getValue() - Method in enum loci.formats.in.BaseZeissReader.PointStyle

getValue() - Method in class loci.formats.in.BaseZeissReader.Tag

getValue() - Method in enum loci.formats.in.BaseZeissReader.TextAlignment

getValue(IRandomAccess) - Method in class loci.formats.in.IM3Reader.StringIM3Record

Return the string value for this record

getValue(String) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the value of the given key, beneath this Frame, inferring the value from the parent <Sequence> or grandparent <PVScan> section as needed.

getValue(String) - Method in class loci.formats.in.PrairieMetadata

Gets the value of the given key, at the top-level <PVScan> element.

getValue(String) - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the value of the given key, beneath this Sequence, inferring the value from the parent <PVScan> section as needed.

getValue() - Method in class loci.plugins.prefs.BooleanOption

Gets the current value of the option.

getValue() - Method in class loci.plugins.prefs.DoubleOption

Gets the current value of the option.

getValue(String) - Method in class loci.plugins.prefs.OptionsList

Gets the value of the string option with the given key.

getValue() - Method in class loci.plugins.prefs.StringOption

Gets the current value of the option.

getValue() - Method in class loci.poi.hpsf.Property

Returns the property's value.

getValue() - Method in exception loci.poi.hpsf.VariantTypeException

Returns the value who's variant type caused the problem.

getValue() - Method in class loci.poi.hssf.model.Node

getValue() - Method in class loci.poi.hssf.record.formula.BoolPtg

getValue() - Method in class loci.poi.hssf.record.formula.IntPtg

getValue() - Method in class loci.poi.hssf.record.formula.NumberPtg

getValue() - Method in class loci.poi.hssf.record.formula.StringPtg

getValue() - Method in class loci.poi.hssf.record.FormulaRecord

get the calculated value of the formula

getValue() - Method in class loci.poi.hssf.record.LabelRecord

get the value

getValue() - Method in class loci.poi.hssf.record.NumberRecord

get the value for the cell

getValue() - Method in class loci.poi.util.BinaryTree.Node

getValue(int) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, appropriately shifted right.

getValue() - Method in class ome.xml.model.BooleanAnnotation

getValue() - Method in class ome.xml.model.CommentAnnotation

getValue() - Method in class ome.xml.model.DoubleAnnotation

getValue() - Method in enum ome.xml.model.enums.AcquisitionMode

getValue() - Method in enum ome.xml.model.enums.ArcType

getValue() - Method in enum ome.xml.model.enums.Binning

getValue() - Method in enum ome.xml.model.enums.Compression

getValue() - Method in enum ome.xml.model.enums.ContrastMethod

getValue() - Method in enum ome.xml.model.enums.Correction

getValue() - Method in enum ome.xml.model.enums.DetectorType

getValue() - Method in enum ome.xml.model.enums.DimensionOrder

getValue() - Method in enum ome.xml.model.enums.ExperimentType

getValue() - Method in enum ome.xml.model.enums.FilamentType

getValue() - Method in enum ome.xml.model.enums.FillRule

getValue() - Method in enum ome.xml.model.enums.FilterType

getValue() - Method in enum ome.xml.model.enums.FontFamily

getValue() - Method in enum ome.xml.model.enums.FontStyle

getValue() - Method in enum ome.xml.model.enums.IlluminationType

getValue() - Method in enum ome.xml.model.enums.Immersion

getValue() - Method in enum ome.xml.model.enums.LaserMedium

getValue() - Method in enum ome.xml.model.enums.LaserType

getValue() - Method in enum ome.xml.model.enums.LineCap

getValue() - Method in enum ome.xml.model.enums.Marker

getValue() - Method in enum ome.xml.model.enums.Medium

getValue() - Method in enum ome.xml.model.enums.MicrobeamManipulationType

getValue() - Method in enum ome.xml.model.enums.MicroscopeType

getValue() - Method in enum ome.xml.model.enums.NamingConvention

getValue() - Method in enum ome.xml.model.enums.PixelType

getValue() - Method in enum ome.xml.model.enums.Pulse

getValue() - Method in enum ome.xml.model.enums.UnitsElectricPotential

getValue() - Method in enum ome.xml.model.enums.UnitsFrequency

getValue() - Method in enum ome.xml.model.enums.UnitsLength

getValue() - Method in enum ome.xml.model.enums.UnitsPower

getValue() - Method in enum ome.xml.model.enums.UnitsPressure

getValue() - Method in enum ome.xml.model.enums.UnitsTemperature

getValue() - Method in enum ome.xml.model.enums.UnitsTime

getValue() - Method in class ome.xml.model.LongAnnotation

getValue() - Method in class ome.xml.model.MapAnnotation

getValue() - Method in class ome.xml.model.MapPair

getValue() - Method in class ome.xml.model.primitives.PrimitiveType

Retrieves the concrete delegate value.

getValue() - Method in class ome.xml.model.TagAnnotation

getValue() - Method in class ome.xml.model.TermAnnotation

getValue() - Method in class ome.xml.model.TimestampAnnotation

getValue() - Method in class ome.xml.model.UUID

getValue() - Method in class ome.xml.model.XMLAnnotation

getValueAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a String containing a human-readable version of the data item.

getValueCount() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's ValueCount value.

getValueForKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation

Return just the value (i.e.

getValueList() - Method in class ome.metakit.ColumnMap

Return the list of values in this map's column.

getValueName(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the mnemonic name associated with a particular value that this tag's data may take on, or null if no name is present.

getValueOffset() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's ValueOffset value.

getValues() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the table of Frame key/value pairs.

getValues() - Method in class loci.formats.in.PrairieMetadata

Gets the table of PVScan key/value pairs.

getValues() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the table of Frame key/value pairs.

getValues() - Method in class ome.metakit.ColumnMap

Return an array of the values in this map's column.

getValuesDataType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the values data type field for the Series record.

getVar(String) - Method in class loci.common.ReflectedUniverse

Deprecated.

Returns the value of a variable or field in the universe.

getVariableAttributes(String) - Method in interface loci.formats.services.NetCDFService

Retrieves all of a variable's attributes.

getVariableAttributes(String) - Method in class loci.formats.services.NetCDFServiceImpl

getVariableList() - Method in interface loci.formats.services.NetCDFService

Retrieves an exhaustive list of the HDF paths for all variables in the HDF document.

getVariableList() - Method in class loci.formats.services.NetCDFServiceImpl

getVariableValue(String) - Method in interface loci.formats.services.NetCDFService

Retrieves a variable's value.

getVariableValue(String) - Method in class loci.formats.services.NetCDFServiceImpl

getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getVariantLength(long) - Static method in class loci.poi.hpsf.Variant

Returns a variant type's length.

getVariantName(long) - Static method in class loci.poi.hpsf.Variant

Returns the variant type name associated with a variant type number.

getVariantType() - Method in exception loci.poi.hpsf.VariantTypeException

Returns the offending variant type.

getVaryDisplayPattern() - Method in class loci.poi.hssf.record.ChartFormatRecord

getVCenter() - Method in class loci.poi.hssf.record.VCenterRecord

get whether to center vertically or not

getVendor() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return a vendor string for the package.

getVersion() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Deprecated.

getVersion() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return a version string for the package.

getVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the Version data element.

getVersion() - Method in class loci.poi.hssf.record.BOFRecord

Version number - for BIFF8 should be 0x06

getVersionNumber(String[]) - Method in class loci.plugins.macro.LociFunctions

getVertAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the vertical analysis wavelet filters used in each level, for the specified tile-component.

getVertAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the vertical analysis wavelet filters used in each level, for the specified component and tile.

getVerticalAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the vertical alignment of text in the cell

getVerticalAlignment() - Method in class loci.poi.hssf.record.TextRecord

Get the vertical alignment field for the Text record.

getVerticalAlignment() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of vertical alignment for the cell

getVerticalHold() - Method in class loci.poi.hssf.record.WindowOneRecord

get the vertical position of the window (in 1/20ths of a point)

getVerticallyCenter(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determine whether printed output for this sheet will be vertically centered.

getVerticalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Return the vertical resolution.

getVerticalScale() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Get the verticalScale field for the PlotGrowth record.

getVerticalSplitLeftColumn() - Method in class loci.poi.hssf.util.PaneInformation

For a vertical split returns the left column in the RIGHT pane.

getVerticalSplitPosition() - Method in class loci.poi.hssf.util.PaneInformation

Returns the vertical position of the split.

getVerticalTextAlignment() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getVerWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

This function returns the vertical wavelet filter relevant to this subband

getVerWFilter() - Method in class jj2000.j2k.wavelet.Subband

This function returns the vertical wavelet filter relevant to this subband

getVerWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

This function returns the vertical wavelet filter relevant to this subband

getVFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the vertical analysis filters to be used in component 'n' and tile 't'.

getVFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the vertical analysis filters to be used in component 'n' and tile 't'.

getViewableArray() - Method in interface loci.poi.poifs.dev.POIFSViewable

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.DocumentNode

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.property.Property

Get an array of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in interface loci.poi.poifs.dev.POIFSViewable

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.DocumentNode

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.property.Property

Get an Iterator of objects, some of which may implement POIFSViewable

getVirtualInfo() - Method in class loci.plugins.in.ImporterOptions

getVirtualReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getVisible() - Method in class ome.xml.model.Shape

getVoltage() - Method in class loci.formats.in.ND2Handler

getVoltage() - Method in class ome.xml.model.Detector

getVoltage() - Method in class ome.xml.model.DetectorSettings

getVoltageUnitXsdDefault() - Static method in class ome.xml.model.Detector

getVoltageUnitXsdDefault() - Static method in class ome.xml.model.DetectorSettings

getVolumeName(int) - Method in class loci.formats.in.CellSensReader

getVoxelSize(int) - Method in class loci.formats.in.SlideBook6Reader

getVoxSzX() - Method in interface loci.formats.services.WlzService

Gets voxel width.

getVoxSzX() - Method in class loci.formats.services.WlzServiceImpl

getVoxSzY() - Method in interface loci.formats.services.WlzService

Gets voxel height.

getVoxSzY() - Method in class loci.formats.services.WlzServiceImpl

getVoxSzZ() - Method in interface loci.formats.services.WlzService

Gets voxel depth.

getVoxSzZ() - Method in class loci.formats.services.WlzServiceImpl

getVResolution() - Method in class loci.poi.hssf.record.PrintSetupRecord

getVResolution() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the vertical resolution.

getWaitTime() - Method in class loci.formats.in.PrairieMetadata

Gets the waitTime recorded in the configuration.

getWavelength(Double, String) - Static method in class loci.formats.FormatTools

Formats the input value for the wavelength into a length of the given unit.

getWavelength(Double) - Static method in class loci.formats.FormatTools

getWavelength(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getWavelength() - Method in class ome.xml.model.Laser

getWavelength() - Method in class ome.xml.model.LightSourceSettings

getWavelengthMax() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the wavelengthMax associated with this File.

getWavelengthMin() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the wavelengthMin associated with this File.

getWavelengths() - Method in class loci.formats.in.IM3Reader.Spectrum

getWavelengths() - Method in class loci.formats.in.MetamorphHandler

getWavelengthUnitXsdDefault() - Static method in class ome.xml.model.Laser

getWavelengthUnitXsdDefault() - Static method in class ome.xml.model.LightSourceSettings

getWeight() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the weight field for the LineFormat record.

getWell(int) - Method in class loci.formats.in.CellWorxReader

Retrieve the well index corresponding to the given series.

getWell(String) - Method in class loci.formats.in.FlexReader

Returns a two-element array containing the well row and well column corresponding to the given file.

getWell(int) - Method in class loci.formats.in.MetamorphTiffReader

getWell(int) - Method in class ome.xml.model.Plate

getWell() - Method in class ome.xml.model.WellSample

getWellAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getWellAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Well.

getWellAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Well.

getWellAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Color property of Well.

getWellColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellColumn(String) - Method in class loci.formats.in.CellomicsReader

getWellColumn(int) - Method in class loci.formats.in.CellWorxReader

Retrieve the well column corresponding to the given series.

getWellColumn(String) - Method in class loci.formats.in.MetamorphTiffReader

getWellColumn(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellColumn(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellColumn(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Column property of Well.

getWellColumn(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellCount(int) - Method in class ome.xml.meta.AggregateMetadata

getWellCount(int) - Method in class ome.xml.meta.DummyMetadata

getWellCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Well elements.

getWellCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellExternalDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellExternalDescription(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellExternalDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExternalDescription property of Well.

getWellExternalDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellExternalIdentifier(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellExternalIdentifier(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellExternalIdentifier(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExternalIdentifier property of Well.

getWellExternalIdentifier(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellFromSeries(int) - Method in class loci.formats.in.InCellReader

getWellID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellID(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Well.

getWellID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellName(String) - Method in class loci.formats.in.CellomicsReader

getWellOriginX() - Method in class ome.xml.model.Plate

getWellOriginXUnitXsdDefault() - Static method in class ome.xml.model.Plate

getWellOriginY() - Method in class ome.xml.model.Plate

getWellOriginYUnitXsdDefault() - Static method in class ome.xml.model.Plate

getWellReagentRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellReagentRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellReagentRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ReagentRef property of Well.

getWellReagentRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellRow(String) - Method in class loci.formats.in.CellomicsReader

getWellRow(int) - Method in class loci.formats.in.CellWorxReader

Retrieve the well row corresponding to the given series.

getWellRow(String) - Method in class loci.formats.in.MetamorphTiffReader

getWellRow(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellRow(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellRow(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Row property of Well.

getWellRow(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellSample(int) - Method in class ome.xml.model.Well

getWellSampleCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellSampleCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellSampleCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of WellSample elements.

getWellSampleCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellSampleID(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellSampleID(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getWellSampleID(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of WellSample.

getWellSampleID(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellSampleImageRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellSampleImageRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getWellSampleImageRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ImageRef property of WellSample.

getWellSampleImageRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellSampleIndex(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellSampleIndex(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getWellSampleIndex(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Index property of WellSample.

getWellSampleIndex(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellSamplePositionX(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellSamplePositionX(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getWellSamplePositionX(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PositionX property of WellSample.

getWellSamplePositionX(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellSamplePositionY(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellSamplePositionY(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getWellSamplePositionY(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PositionY property of WellSample.

getWellSamplePositionY(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellSampleRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellSampleRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellSampleRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of WellSampleRef elements.

getWellSampleRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellSampleTimepoint(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellSampleTimepoint(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getWellSampleTimepoint(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Timepoint property of WellSample.

getWellSampleTimepoint(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWellType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getWellType(int, int) - Method in class ome.xml.meta.DummyMetadata

getWellType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Well.

getWellType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getWhere() - Method in class mdbtools.dbengine.sql.Select

getWidgets() - Method in class loci.plugins.config.FlexWidgets

getWidgets() - Method in interface loci.plugins.config.IFormatWidgets

getWidgets() - Method in class loci.plugins.config.ND2Widgets

getWidgets() - Method in class loci.plugins.config.PictWidgets

getWidgets() - Method in class loci.plugins.config.QTWidgets

getWidgets() - Method in class loci.plugins.config.SDTWidgets

getWidgets() - Method in class loci.plugins.config.TiffDelegateWidgets

getWidth() - Method in class com.luratech.lwf.lwfDecoder

getWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the width of the image.

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the width of the image.

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getWidth() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getWidth() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the number of leafs along the horizontal direction.

getWidth() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Returns the number of leafs along the horizontal direction.

getWidth() - Method in class loci.formats.codec.JPEGTileDecoder

getWidth() - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

getWidth(int) - Method in class loci.formats.in.LegacyND2Reader

getWidth() - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.getWidth()

getWidth() - Method in class loci.formats.services.LuraWaveServiceImpl

getWidth(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack

getWidth() - Method in class loci.plugins.util.BFVirtualStack

getWidth() - Method in class loci.plugins.util.RecordedImageProcessor

getWidth() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the width of the metafile in EMU's (English Metric Units).

getWidth() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the width field for the AxisParent record.

getWidth() - Method in class loci.poi.hssf.record.ChartFormatRecord

getWidth() - Method in class loci.poi.hssf.record.ChartRecord

Get the width field for the Chart record.

getWidth() - Method in class loci.poi.hssf.record.TextRecord

Get the width field for the Text record.

getWidth() - Method in class loci.poi.hssf.record.WindowOneRecord

get the width of the window

getWidth() - Method in class loci.poi.hssf.util.RangeAddress

getWidth() - Method in class ome.xml.model.Mask

getWidth() - Method in class ome.xml.model.Rectangle

getWidth() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the width of the JPEG image associated with this decompressor instance.

getWidthResoulution() - Method in class ome.jxr.ifd.IFDMetadata

getWindowing() - Method in class loci.poi.hssf.record.DateWindow1904Record

gets whether or not to use 1904 date windowing (which means you'll be screwed in 2004)

getWindowlessInfo() - Method in class loci.plugins.in.ImporterOptions

getWindowOne() - Method in class loci.poi.hssf.model.Workbook

getWlzOrgLabelName() - Method in interface loci.formats.services.WlzService

Gets the text string used for the Woolz origin label.

getWlzOrgLabelName() - Method in class loci.formats.services.WlzServiceImpl

getWordCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the word count or 0 if the SummaryInformation does not contain a word count.

getWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

getWorkingDistance() - Method in class ome.xml.model.Objective

getWorkingDistanceUnitXsdDefault() - Static method in class ome.xml.model.Objective

getWrappedStream() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

getWrapText() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to wrap the text in the cell

getWrapText() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the text should be wrapped

getWriteAccess() - Method in class loci.poi.hssf.model.Workbook

getWriteCodeStreamOnly() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets writeCodeStreamOnly.

getWriteProtect() - Method in class loci.poi.hssf.model.Workbook

getWriter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the current ImageWriter.

getWriter(String) - Method in class loci.formats.ImageWriter

Gets the writer used to save the given file.

getWriter() - Method in class loci.formats.ImageWriter

Gets the writer used to save the current file.

getWriter(Class<? extends IFormatWriter>) - Method in class loci.formats.ImageWriter

Gets the file format writer instance matching the given class.

getWriter() - Method in class loci.formats.WriterWrapper

Gets the wrapped writer.

getWriterList() - Method in class loci.tests.testng.FormatWriterTest

getWriters() - Method in class loci.formats.ImageWriter

Gets all constituent file format writers.

getWSBool1() - Method in class loci.poi.hssf.record.WSBoolRecord

get first byte (see bit getters)

getWSBool2() - Method in class loci.poi.hssf.record.WSBoolRecord

get the second byte (see bit getters)

getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the data type used by the filters in this object, as defined in the 'DataBlk' interface for specified tile-component.

getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the data type used by the filters in this object, as defined in the 'DataBlk' interface for specified tile-component.

getWTDataType() - Method in class jj2000.j2k.wavelet.WTFilterSpec

Returns the data type used by the filters in this object, as defined in the 'DataBlk' interface.

getX(double[]) - Method in class loci.formats.in.TextReader

getX() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the x field for the AxisParent record.

getX() - Method in class loci.poi.hssf.record.ChartRecord

Get the x field for the Chart record.

getX() - Method in class loci.poi.hssf.record.PaneRecord

Get the x field for the Pane record.

getX() - Method in class loci.poi.hssf.record.TextRecord

Get the x field for the Text record.

getX() - Method in class ome.xml.model.Ellipse

getX() - Method in class ome.xml.model.Label

getX() - Method in class ome.xml.model.Mask

getX() - Method in class ome.xml.model.Point

getX() - Method in class ome.xml.model.Rectangle

getX() - Method in class ome.xml.model.StageLabel

getX1() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The top left x coordinate of this group.

getX1() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The top left x coordinate of this group.

getX1() - Method in class ome.xml.model.Line

getX2() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The bottom right x coordinate of this group.

getX2() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The bottom right x coordinate of this group.

getX2() - Method in class ome.xml.model.Line

getXAxisUpperLeft() - Method in class loci.poi.hssf.record.LegendRecord

Get the x axis upper left field for the Legend record.

getXBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the x Basis field for the FontBasis record.

getXBATChainOffset(int) - Static method in class loci.poi.poifs.storage.BATBlock

getXBATCount() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getXBATIndex() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getXFAt(int) - Method in class loci.poi.hssf.record.MulBlankRecord

returns the xf index for column (coffset = column - field_2_first_col)

getXFAt(int) - Method in class loci.poi.hssf.record.MulRKRecord

returns the xf index for column (coffset = column - field_2_first_col)

getXFields() - Method in class loci.formats.in.ND2Handler

getXFIndex() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getXFIndex() - Method in class loci.poi.hssf.record.BlankRecord

get the index of the extended format record to style this cell with

getXFIndex() - Method in class loci.poi.hssf.record.BoolErrRecord

get the index to the ExtendedFormat

getXFIndex() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

getXFIndex() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the columns' default format info

getXFIndex() - Method in class loci.poi.hssf.record.FormulaRecord

getXFIndex() - Method in class loci.poi.hssf.record.LabelRecord

getXFIndex() - Method in class loci.poi.hssf.record.LabelSSTRecord

get the index to the extended format record

getXFIndex() - Method in class loci.poi.hssf.record.NumberRecord

get the index to the ExtendedFormat

getXFIndex() - Method in class loci.poi.hssf.record.RKRecord

getXFIndex() - Method in class loci.poi.hssf.record.RowRecord

if the row is formatted then this is the index to the extended format record

getXFIndex() - Method in class loci.poi.hssf.record.StyleRecord

get the actual index of the style extended format record

getXFIndexForColAt(short) - Method in class loci.poi.hssf.model.Sheet

get the index to the ExtendedFormatRecord "associated" with the column at specified 0-based index.

getXfpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getXFType() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether the cell is a cell or style XFRecord

getXML(Document) - Static method in class loci.common.xml.XMLTools

Converts the given DOM back to a string.

getXML() - Method in class loci.formats.tools.EditTiffG

getXMLAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getXMLAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getXMLAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getXMLAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to an XMLAnnotation.

getXMLAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getXMLAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getXMLAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getXMLAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of XMLAnnotation.

getXMLAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getXMLAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getXMLAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getXMLAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of XMLAnnotation.

getXMLAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getXMLAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getXMLAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getXMLAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of XMLAnnotation elements.

getXMLAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getXMLAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getXMLAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getXMLAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of XMLAnnotation.

getXMLAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getXMLAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getXMLAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getXMLAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of XMLAnnotation.

getXMLAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getXMLAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getXMLAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getXMLAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of XMLAnnotation.

getXMLAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getXMLAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getXMLAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getXMLAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of XMLAnnotation.

getXMLAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getXmlFooter() - Static method in class loci.formats.tools.PrintFormatTable

getXmlFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getXmlHeader() - Static method in class loci.formats.tools.PrintFormatTable

getXPoints() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getXPosition(int, int) - Method in class loci.formats.in.SlideBook6Reader

getXPosition() - Method in class loci.poi.hssf.record.ChartFormatRecord

getXPosition(String) - Method in class loci.poi.hssf.util.RangeAddress

getXPositions() - Method in class loci.formats.in.ND2Handler

getXResolution() - Method in class loci.formats.tiff.IFD

Retrieve the X resolution (TIFF tag XResolution) from this IFD.

getXSize() - Method in class loci.poi.hssf.record.LegendRecord

Get the x size field for the Legend record.

getXUnitXsdDefault() - Static method in class ome.xml.model.StageLabel

getY(double[]) - Method in class loci.formats.in.TextReader

getY() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the y field for the AxisParent record.

getY() - Method in class loci.poi.hssf.record.ChartRecord

Get the y field for the Chart record.

getY() - Method in class loci.poi.hssf.record.PaneRecord

Get the y field for the Pane record.

getY() - Method in class loci.poi.hssf.record.TextRecord

Get the y field for the Text record.

getY() - Method in class ome.xml.model.Ellipse

getY() - Method in class ome.xml.model.Label

getY() - Method in class ome.xml.model.Mask

getY() - Method in class ome.xml.model.Point

getY() - Method in class ome.xml.model.Rectangle

getY() - Method in class ome.xml.model.StageLabel

getY1() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The top left y coordinate of this group.

getY1() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The top left y coordinate of this group.

getY1() - Method in class ome.xml.model.Line

getY2() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The bottom right y coordinate of this group.

getY2() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The bottom right y coordinate of this group.

getY2() - Method in class ome.xml.model.Line

getYAxisUpperLeft() - Method in class loci.poi.hssf.record.LegendRecord

Get the y axis upper left field for the Legend record.

getYBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the y Basis field for the FontBasis record.

getYPoints() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getYPosition(int, int) - Method in class loci.formats.in.SlideBook6Reader

getYPosition() - Method in class loci.poi.hssf.record.ChartFormatRecord

getYPosition(String) - Method in class loci.poi.hssf.util.RangeAddress

getYPositions() - Method in class loci.formats.in.ND2Handler

getYResolution() - Method in class loci.formats.tiff.IFD

Retrieve the Y resolution (TIFF tag YResolution) from this IFD.

getYSize() - Method in class loci.poi.hssf.record.LegendRecord

Get the y size field for the Legend record.

getYUnitXsdDefault() - Static method in class ome.xml.model.StageLabel

getZ() - Method in class loci.formats.gui.ImageViewer

Gets the Z value of the currently displayed image.

getZ() - Method in class ome.xml.model.StageLabel

getZBegin(int) - Method in class loci.plugins.in.ImporterOptions

getZBegin(int) - Method in class loci.plugins.in.ImportProcess

getZCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getZCTCoords(int) - Method in class loci.formats.ChannelMerger

getZCTCoords(int) - Method in class loci.formats.ChannelSeparator

getZCTCoords(int) - Method in class loci.formats.DimensionSwapper

getZCTCoords(int) - Method in class loci.formats.FileStitcher

getZCTCoords(int) - Method in class loci.formats.FormatReader

getZCTCoords(IFormatReader, int) - Static method in class loci.formats.FormatTools

Gets the Z, C and T coordinates corresponding to the given rasterized index value (real sizes).

getZCTCoords(String, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the Z, C and T coordinates corresponding to the given rasterized index value (real sizes).

getZCTCoords(String, int, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the Z, C and T coordinates corresponding to the given rasterized index value.

getZCTCoords(int) - Method in interface loci.formats.IFormatReader

Gets the Z, C and T coordinates (real sizes) corresponding to the given rasterized index value.

getZCTCoords(int) - Method in class loci.formats.ImageReader

getZCTCoords(int) - Method in class loci.formats.in.FilePatternReader

getZCTCoords(int) - Method in class loci.formats.ReaderWrapper

getZCTCoords(Double, Double[], Double[], Double[]) - Method in class loci.plugins.macro.LociFunctions

getZCTModuloCoords(int) - Method in class loci.formats.ChannelMerger

getZCTModuloCoords(int) - Method in class loci.formats.ChannelSeparator

getZCTModuloCoords(int) - Method in class loci.formats.DimensionSwapper

getZCTModuloCoords(int) - Method in class loci.formats.FileStitcher

getZCTModuloCoords(int) - Method in class loci.formats.FormatReader

getZCTModuloCoords(IFormatReader, int) - Static method in class loci.formats.FormatTools

Gets the Z, C, T, ModuloZ, ModuloC and ModuloZ coordinates corresponding to the given rasterized index value (effective sizes).

getZCTModuloCoords(int) - Method in interface loci.formats.IFormatReader

Gets the Z, C, T, moduloZ, moduloC and moduloT coordinates (effective sizes) corresponding to the given rasterized index value.

getZCTModuloCoords(int) - Method in class loci.formats.ImageReader

getZCTModuloCoords(int) - Method in class loci.formats.ReaderWrapper

getZEnd(int) - Method in class loci.plugins.in.ImporterOptions

getZEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getZero1() - Method in class loci.poi.hssf.record.TickRecord

Get the zero 1 field for the Tick record.

getZero2() - Method in class loci.poi.hssf.record.TickRecord

Get the zero 2 field for the Tick record.

getZero3() - Method in class loci.poi.hssf.record.TickRecord

Get the zero 3 field for the Tick record.

getZeroHeight() - Method in class loci.poi.hssf.record.RowRecord

get whether or not to display this row with 0 height

getZeroHeight() - Method in class loci.poi.hssf.usermodel.HSSFRow

get whether or not to display this row with 0 height

getZeroOffset(ImagePlus) - Static method in class loci.plugins.in.Colorizer

getZoom() - Method in class loci.formats.in.MetamorphHandler

getZoom() - Method in class ome.xml.model.Detector

getZoom() - Method in class ome.xml.model.DetectorSettings

getZPosition(int, int, int) - Method in class loci.formats.in.SlideBook6Reader

getZPositions() - Method in class loci.formats.in.MetamorphHandler

getZPositions() - Method in class loci.formats.in.ND2Handler

getZSections() - Method in class loci.formats.in.ND2Handler

getZSlices(int) - Method in class loci.formats.in.LegacyND2Reader

getZStep(int) - Method in class loci.plugins.in.ImporterOptions

getZStep(int) - Method in class loci.plugins.in.ImportProcess

getZUnitXsdDefault() - Static method in class ome.xml.model.StageLabel

GIF_MAGIC_STRING - Static variable in class loci.formats.in.GIFReader

GIFImageMetadata - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

GIFImageMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

GIFImageMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat

GIFImageMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources

GIFImageWriteParam - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageWriteParam(Locale) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriteParam

GIFImageWriter - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageWriter(GIFImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

GIFImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

GIFMetadata - Class in com.sun.media.imageioimpl.plugins.gif

Class which adds utility DOM element attribute access methods to IIOMetadata for subclass use.

GIFMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

GIFReader - Class in loci.formats.in

GIFReader is the file format reader for Graphics Interchange Format (GIF) files.

GIFReader() - Constructor for class loci.formats.in.GIFReader

Constructs a new GIF reader.

GIFStreamMetadata - Class in com.sun.media.imageioimpl.plugins.gif

GIFStreamMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

GIFStreamMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

GIFStreamMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif

GIFStreamMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat

GIFStreamMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif

GIFStreamMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources

GIFWritableImageMetadata - Class in com.sun.media.imageioimpl.plugins.gif

GIFWritableImageMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata

GIFWritableStreamMetadata - Class in com.sun.media.imageioimpl.plugins.gif

GIFWritableStreamMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata

GIGA(Unit<T>) - Static method in class ome.units.UNITS

GIGAHZ - Static variable in class ome.units.UNITS

GIGAM - Static variable in class ome.units.UNITS

GIGAPA - Static variable in class ome.units.UNITS

GIGAS - Static variable in class ome.units.UNITS

GIGAV - Static variable in class ome.units.UNITS

GIGAW - Static variable in class ome.units.UNITS

GIT_DEVELOP_PATH - Static variable in class ome.specification.SchemaResolver

GIT_MASTER_PATH - Static variable in class ome.specification.SchemaResolver

global - Variable in class loci.formats.in.BMPReader

Offset to image data.

globalColorTable - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

globalCrc - Variable in class loci.common.CRC

globalMetadata - Variable in class loci.formats.in.LeicaHandler

globalTable - Variable in class loci.tests.testng.Configuration

go() - Method in class mdbtools.dbengine.Tests

go() - Method in class mdbtools.tests.ColumnTest

GON - Static variable in class ome.units.UNITS

gotHeader - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Indicates whether the header is read.

gotHeader - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Indicates whether the header is read.

gotHeader - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

gotHeader - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Indicates whether the header is read.

gotHeader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

gotHeader - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

Indicates whether the header is read.

gotxmin - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

gotymin - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

GPS_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

An array of bytes containing the values {'2', '2', '0', '0'} to be used with the "GPSVersionID" tag to indicate GPS version 2.2.

gradient(int, int, int) - Method in class loci.formats.tools.MakeTestOmeTiff

GRADIENT_LUT - Static variable in class loci.formats.in.CellSensReader

GRAPHICS - Static variable in class loci.formats.in.GIFReader

GRAPHICS_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the graphics domain.

GRAY16 - Static variable in class loci.formats.in.ZeissCZIReader

GRAY32 - Static variable in class loci.formats.in.ZeissCZIReader

GRAY8 - Static variable in class loci.formats.in.ZeissCZIReader

Pixel type constants.

GRAY_ALPHA - Static variable in class loci.formats.in.APNGReader

GRAY_DOUBLE - Static variable in class loci.formats.in.ZeissCZIReader

GRAY_FLOAT - Static variable in class loci.formats.in.ZeissCZIReader

GRAY_RESPONSE_CURVE - Static variable in class loci.formats.tiff.IFD

GRAY_RESPONSE_UNIT - Static variable in class loci.formats.tiff.IFD

GRAY_RESPONSE_UNIT_HUNDRED_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_HUNDREDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_TEN_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_TENTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAYSCALE - Static variable in class loci.formats.in.APNGReader

Color types.

GREATER_THAN - Static variable in class mdbtools.dbengine.sql.Equation

GREATER_THAN_OR_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation

GreaterEqual() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and translate Greater than or Equal

GreaterEqualPtg - Class in loci.poi.hssf.record.formula

PTG class to implement greater or equal to

GreaterEqualPtg() - Constructor for class loci.poi.hssf.record.formula.GreaterEqualPtg

Creates new GreaterEqualPtg

GreaterEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.GreaterEqualPtg

GreaterThan() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a Greater Than

GREATERTHAN - Static variable in class loci.poi.hssf.record.formula.GreaterThanPtg

GreaterThanPtg - Class in loci.poi.hssf.record.formula

Greater than operator PTG ">"

GreaterThanPtg() - Constructor for class loci.poi.hssf.record.formula.GreaterThanPtg

Constructor.

GreaterThanPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.GreaterThanPtg

Constructor.

green - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

green - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

green - Variable in class loci.poi.hssf.record.PColor

green - Variable in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

GREEN_GAIN - Static variable in class loci.formats.in.CellSensReader

GREEN_OFFSET - Static variable in class loci.formats.in.CellSensReader

GREEN_TO_RED_MIN - Static variable in class loci.plugins.in.Colorizer

greenGain - Variable in class loci.formats.in.CellSensReader.Pyramid

greenMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

greenMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

greenOffset - Variable in class loci.formats.in.CellSensReader.Pyramid

greenOffset - Static variable in class org.libjpegturbo.turbojpeg.TJ

greenShort - Variable in class loci.formats.gui.Index16ColorModel

Lookup tables.

greenX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

greenY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

greenZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

GREYSCALE_COMPRESSION - Static variable in class loci.formats.in.FlowSightReader

GRID - Static variable in class loci.formats.in.FV1000Reader

gridset - Variable in class loci.poi.hssf.model.Sheet

GridsetRecord - Class in loci.poi.hssf.record

Title: Gridset Record.

GridsetRecord() - Constructor for class loci.poi.hssf.record.GridsetRecord

GridsetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GridsetRecord

Constructs a GridSet record and sets its fields appropriately.

GRIDSIZE_OFFSET - Static variable in class loci.formats.in.MRCReader

grossSizeFromDataSize(int) - Static method in class loci.poi.hssf.record.DrawingGroupRecord

group - Variable in class loci.formats.FileStitcher

group - Variable in class loci.formats.FormatReader

Whether or not to group multi-file formats.

GROUP - Static variable in class loci.formats.in.GatanReader

Tag types.

groupBy - Variable in class mdbtools.dbengine.sql.Select

groupColumn(short, short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Create an outline for the provided column range.

groupColumnRange(short, short, boolean) - Method in class loci.poi.hssf.model.Sheet

Creates an outline group for the specified columns.

groupColumnRange(short, short, boolean) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Creates an outline group for the specified columns.

groupFiles(String[], MetadataStore) - Method in class loci.formats.in.FlexReader

groupFiles() - Method in class loci.formats.in.TCSReader

groupFilesBox - Variable in class loci.plugins.in.MainDialog

GroupMarkerSubRecord - Class in loci.poi.hssf.record

The group marker record is used as a position holder for groups.

GroupMarkerSubRecord() - Constructor for class loci.poi.hssf.record.GroupMarkerSubRecord

GroupMarkerSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GroupMarkerSubRecord

Constructs a group marker record and sets its fields appropriately.

groupRow(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

groupRowRange(int, int, boolean) - Method in class loci.poi.hssf.model.Sheet

GROUPSHAPE__1DADJUSTMENT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__BEHINDDOCUMENT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__DESCRIPTION - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__EDITEDWRAP - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__HIDDEN - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__HYPERLINK - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__ISBUTTON - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__ONDBLCLICKNOTIFY - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__PRINT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__REGROUPID - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__SHAPENAME - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPDISTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPDISTLEFT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPDISTRIGHT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPDISTTOP - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPPOLYGONVERTICES - Static variable in class loci.poi.ddf.EscherProperties

grow() - Method in class loci.poi.util.BinaryTree

bump up the size and note that the map has changed

growArray(int) - Method in class loci.poi.util.DoubleList

growArray(int) - Method in class loci.poi.util.IntList

growArray(int) - Method in class loci.poi.util.ShortList

growBuffer() - Method in class jj2000.j2k.util.ISRandomAccessIO

Grows the cache buffer by 'inc', upto a maximum of 'maxsize'.

guardBits - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

The number of bits used for each tile-component in the quantizer to avoid overflow.

GuardBitsSpec - Class in jj2000.j2k.quantization

This class extends ModuleSpec class in order to hold specifications about number of guard bits in each tile-component.

GuardBitsSpec(int, int, byte) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec

Constructs an empty 'GuardBitsSpec' with specified number of tile and components.

GuardBitsSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec

Constructs a new 'GuardBitsSpec' for the specified number of components and tiles and the arguments of "-Qguard_bits" option.

GUITools - Class in loci.formats.gui

A utility class for working with graphical user interfaces.

GUITools() - Constructor for class loci.formats.gui.GUITools

GutsRecord - Class in loci.poi.hssf.record

Title: Guts Record

GutsRecord() - Constructor for class loci.poi.hssf.record.GutsRecord

GutsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GutsRecord

Constructs a Guts record and sets its fields appropriately.

gz - Variable in class loci.formats.in.LiFlimReader

Stream to use for reading gzip-compressed pixel data.

gzip - Variable in class loci.formats.in.ICSReader

Whether or not the pixels are GZIP-compressed.

gzip - Variable in class loci.formats.in.LiFlimReader

True if gzip compression was used to deflate the pixels.

GZipHandle - Class in loci.common

StreamHandle implementation for reading from gzip-compressed files or byte arrays.

GZipHandle(String) - Constructor for class loci.common.GZipHandle

Construct a new GZipHandle for the given file.

gzipStream - Variable in class loci.formats.in.ICSReader

gzPos - Variable in class loci.formats.in.LiFlimReader

Image number indicating position in gzip stream.

gzSeries - Variable in class loci.formats.in.LiFlimReader

Series number indicating position in gzip stream.

H

h - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

h - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The height of the image

h - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

h - Variable in class jj2000.j2k.codestream.CoordInfo

Object's height

h - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct height in the corresponding resolution level

h - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Height of the code-block

h - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder

The vertical dimensions of the base level

h - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The vertical dimensions of the base level

h - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The height of the code-block

h - Variable in class jj2000.j2k.image.DataBlk

The height of the block, in pixels.

h - Variable in class jj2000.j2k.image.ImgDataJoiner

The height of the image

h - Variable in class jj2000.j2k.image.input.ImgReader

The height of the image

h - Variable in class jj2000.j2k.roi.encoder.ROI

height of rectangular ROI

h - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

Height of the subband mask

h - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The height of the code-block

h - Variable in class jj2000.j2k.wavelet.Subband

The height of the subband

H - Static variable in class ome.units.UNITS

HAIR - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

HALFTONE_HINTS - Static variable in class loci.formats.tiff.IFD

HamamatsuVMSReader - Class in loci.formats.in

HamamatsuVMSReader is the file format reader for Hamamatsu VMS datasets.

HamamatsuVMSReader() - Constructor for class loci.formats.in.HamamatsuVMSReader

Constructs a new Hamamatsu VMS reader.

handle - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

handle - Variable in class org.libjpegturbo.turbojpeg.TJDecompressor

handleBitmap(int) - Method in class loci.formats.in.PictReader

Extract the image data in a PICT bitmap structure.

handleException(Throwable) - Static method in class jj2000.j2k.JJ2KExceptionHandler

Handles the exception.

HandleException - Exception in loci.common

HandleException is the exception thrown when something goes wrong in one of the custom I/O classes.

HandleException() - Constructor for exception loci.common.HandleException

HandleException(String) - Constructor for exception loci.common.HandleException

HandleException(String, Throwable) - Constructor for exception loci.common.HandleException

HandleException(Throwable) - Constructor for exception loci.common.HandleException

handleExtension(String, Object[]) - Method in class loci.plugins.macro.MacroFunctions

handleMetadataStore(IFormatReader) - Method in class loci.formats.Memoizer

Return the IFormatReader instance that is passed in or null if it has been invalidated, which will include the instance being closed.

handlePixmap(int) - Method in class loci.formats.in.PictReader

Extracts the image data in a PICT pixmap structure.

handlePixmap(int, int) - Method in class loci.formats.in.PictReader

Handles the unpacking of the image data.

handler - Variable in class loci.formats.in.LeicaSCNReader

handler - Variable in class loci.formats.in.NikonElementsTiffReader

handler - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo

handleSize - Variable in class loci.formats.in.BaseZeissReader.Shape

hardTilingFlag - Variable in class ome.jxr.parser.DatastreamParser

harvestResults(GenericDialog) - Method in class loci.plugins.in.ColorDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.CropDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.FilePatternDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.IdDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.ImporterDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.LocationDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.MainDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.MemoryDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.RangeDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.SeriesDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.SwapDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.UpgradeDialog

HAS_EXTERNAL_FILE - Static variable in class loci.formats.in.CellSensReader

hasAbsoluteZ - Variable in class loci.formats.in.MetamorphReader

hasAbsoluteZValid - Variable in class loci.formats.in.MetamorphReader

hasAlphaChannel() - Method in enum ome.jxr.ifd.PixelFormat

hasCell() - Method in class loci.poi.hssf.util.RangeAddress

hasChildNodes() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

hasChipOffsets - Variable in class loci.formats.in.MetamorphReader

hasCompanionFiles - Variable in class loci.formats.FormatReader

Whether this format supports multi-file datasets.

hasCompanionFiles() - Method in class loci.formats.FormatReader

hasCompanionFiles() - Method in interface loci.formats.IFormatReader

Returns true if this format supports multi-file datasets.

hasCompanionFiles() - Method in class loci.formats.ImageReader

hasCompanionFiles() - Method in class loci.formats.in.FilePatternReader

hasCompanionFiles() - Method in class loci.formats.ReaderWrapper

hasDetectorSettings - Variable in class loci.formats.in.ZeissCZIReader

hasDualCamera() - Method in class loci.formats.in.MetamorphHandler

hasExposureTime(int) - Method in class loci.tests.testng.Configuration

hasExtendedMeasureInfo - Variable in class loci.formats.in.SDTInfo

hasFlattenedResolutions() - Method in class loci.formats.FormatReader

hasFlattenedResolutions() - Method in interface loci.formats.IFormatReader

Return whether or not resolution flattening is enabled.

hasFlattenedResolutions() - Method in class loci.formats.ImageReader

hasFlattenedResolutions() - Method in class loci.formats.in.FilePatternReader

hasFlattenedResolutions() - Method in class loci.formats.ReaderWrapper

Hash(short, byte) - Static method in class com.sun.media.imageioimpl.common.LZWStringTable

HASH_FREE - Static variable in class com.sun.media.imageioimpl.common.LZWStringTable

HASH_SIZE - Static variable in class loci.formats.codec.LZWCodec

Size of hash table.

HASH_STEP - Static variable in class loci.formats.codec.LZWCodec

Rehashing step.

hashCode() - Method in class loci.common.Location

hashCode() - Method in class loci.common.Region

hashCode() - Method in class loci.formats.in.MetamorphTiffReader.Well

hashCode() - Method in class loci.formats.in.ZeissCZIReader.Coordinate

hashCode() - Method in class loci.formats.tiff.TiffRational

Reasonable hash value for use with hashtables.

hashCode() - Method in class loci.plugins.config.FormatEntry

hashCode() - Method in class loci.plugins.prefs.OptionsList

hashCode() - Method in class loci.poi.ddf.EscherComplexProperty

Calculates a hashcode for this property.

hashCode() - Method in class loci.poi.ddf.EscherSimpleProperty

Returns a hashcode so that this object can be stored in collections that require the use of such things.

hashCode() - Method in class loci.poi.hpsf.ClassID

hashCode() - Method in class loci.poi.hpsf.CustomProperty

hashCode() - Method in class loci.poi.hpsf.Property

hashCode() - Method in class loci.poi.hpsf.PropertySet

hashCode() - Method in class loci.poi.hpsf.Section

hashCode() - Method in class loci.poi.hpsf.SpecialPropertySet

hashCode() - Method in class loci.poi.hssf.record.formula.Area3DPtg

hashCode() - Method in class loci.poi.hssf.record.SSTRecord

hashCode() - Method in class loci.poi.hssf.record.UnicodeString

hashcode - Variable in class loci.poi.poifs.filesystem.DocumentDescriptor

hashCode() - Method in class loci.poi.poifs.filesystem.DocumentDescriptor

calculate and return the hashcode

hashcode - Variable in class loci.poi.poifs.filesystem.POIFSDocumentPath

hashCode() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

calculate and return the hashcode

hashCode() - Method in class loci.poi.util.BinaryTree.Node

hashCode() - Method in class loci.poi.util.DoubleList

THIS MOST LIKELY DOES NOT WORK Returns the hash code value for this list.

hashCode() - Method in class loci.poi.util.IntList

Returns the hash code value for this list.

hashCode() - Method in class loci.poi.util.ShortList

Returns the hash code value for this list.

hashCode() - Method in class loci.tests.testng.Configuration

hashCode() - Method in class ome.units.quantity.Angle

hashCode() - Method in class ome.units.quantity.ElectricPotential

hashCode() - Method in class ome.units.quantity.Frequency

hashCode() - Method in class ome.units.quantity.Length

hashCode() - Method in class ome.units.quantity.Power

hashCode() - Method in class ome.units.quantity.Pressure

hashCode() - Method in class ome.units.quantity.Temperature

hashCode() - Method in class ome.units.quantity.Time

hashCode() - Method in class ome.xml.model.MapPair

hashCodeValue - Variable in class ome.units.quantity.Angle

hashCodeValue - Variable in class ome.units.quantity.ElectricPotential

hashCodeValue - Variable in class ome.units.quantity.Frequency

hashCodeValue - Variable in class ome.units.quantity.Length

hashCodeValue - Variable in class ome.units.quantity.Power

hashCodeValue - Variable in class ome.units.quantity.Pressure

hashCodeValue - Variable in class ome.units.quantity.Temperature

hashCodeValue - Variable in class ome.units.quantity.Time

hashDigests - Variable in class loci.tests.testng.Jpeg2000GrindTest

hashPassword(String) - Static method in class loci.poi.hssf.record.FileSharingRecord

hashPassword(String) - Static method in class loci.poi.hssf.record.PasswordRecord

hashSHA1 - Variable in class ome.xml.model.Plane

HASHSIZE - Static variable in class com.sun.media.imageioimpl.common.LZWStringTable

HASHSTEP - Static variable in class com.sun.media.imageioimpl.common.LZWStringTable

hasImageDescription() - Method in class loci.tests.testng.Configuration

hasInstrumentData - Variable in class loci.formats.in.ICSReader

hasJPEGTables - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

hasMeasFCSInfo - Variable in class loci.formats.in.SDTInfo

hasMeasHISTInfo - Variable in class loci.formats.in.SDTInfo

hasMeasStopInfo - Variable in class loci.formats.in.SDTInfo

hasMeasureInfo - Variable in class loci.formats.in.SDTInfo

hasMultibyte(String) - Static method in class loci.poi.util.StringUtil

check the parameter has multibyte character

hasNext() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

hasNext() - Method in class loci.poi.hssf.usermodel.HSSFRow.CellIterator

hasNext() - Method in class loci.poi.util.BinaryTree.BinaryTreeIterator

hasNextRecord() - Method in class loci.poi.hssf.record.RecordInputStream

hasPaddingByte - Variable in class loci.formats.in.IvisionReader

hasPlainTextExtension - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

hasPlaneReader - Variable in class loci.formats.in.AmiraReader

hasRange() - Method in class loci.poi.hssf.util.RangeAddress

hasSheetName() - Method in class loci.poi.hssf.util.RangeAddress

hasSPW - Variable in class loci.formats.in.OMETiffReader

hasSPW - Variable in class loci.formats.in.OMEXMLReader

hasStagePositions - Variable in class loci.formats.in.MetamorphReader

hasThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

hasValidWells(Location) - Method in class loci.formats.in.ScreenReader

hasValueNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns true if there are mnemonic names associated with the set of legal values for the data associated with this tag.

hbCreateDecodeTables(int[], int[], int[], char[], int, int, int) - Static method in class loci.common.CBZip2InputStream

Called by createHuffmanDecodingTables() exclusively.

hbuf - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The DataOutputStream to store header data.

HCenterRecord - Class in loci.poi.hssf.record

Title: HCenter record

HCenterRecord() - Constructor for class loci.poi.hssf.record.HCenterRecord

HCenterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HCenterRecord

Constructs an HCenter record and sets its fields appropriately.

HCS_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the high content screening domain.

hd - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

The J2K HeaderDecoder defined in jj2000 packages.

hd - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

hd - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The decoded bit stream header

hd - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Reference to the HeaderDecoder

HDF_MAGIC_STRING - Static variable in class loci.formats.in.CellH5Reader

HDF_MAGIC_STRING - Static variable in class loci.formats.in.ImarisHDFReader

hdfReader - Variable in class loci.formats.services.JHDFServiceImpl

Root of the HDF5 file.

hdfWriter - Variable in class loci.formats.services.JHDFServiceImpl

Root of the HDF5 file.

hdpi - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

HDRI_EXPOSURE_RANGE - Static variable in class loci.formats.in.CellSensReader

HDRI_FRAMES - Static variable in class loci.formats.in.CellSensReader

HDRI_MAP_MODE - Static variable in class loci.formats.in.CellSensReader

HDRI_ON - Static variable in class loci.formats.in.CellSensReader

hdStr - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Current header information in a string

headEnc - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

The header encoder

HEADER - Static variable in class loci.formats.codec.MJPBCodec

HEADER - Static variable in class loci.formats.in.InveonReader

header - Variable in class loci.formats.services.JPEGTurboServiceImpl

header - Variable in class loci.poi.hssf.model.Sheet

HEADER_KEY - Static variable in class loci.common.IniTable

Key to use for storing header value (in brackets).

HEADER_LENGTH - Static variable in class loci.formats.in.DeltavisionReader

HEADER_MARKER - Static variable in class loci.formats.in.VisitechReader

HEADER_SIZE - Static variable in class loci.formats.in.Ecat7Reader

HEADER_SIZE - Static variable in class loci.formats.in.GatanDM2Reader

HEADER_SIZE - Static variable in class loci.formats.in.I2IReader

HEADER_SIZE - Static variable in class loci.formats.in.INRReader

HEADER_SIZE - Static variable in class loci.formats.in.MRCReader

HEADER_SIZE - Static variable in class loci.formats.in.OpenlabRawReader

HEADER_SIZE - Static variable in class loci.formats.in.PovrayReader

HEADER_SIZE - Static variable in class loci.formats.in.PQBinReader

HEADER_SIZE - Static variable in class loci.formats.in.RHKReader

HEADER_SIZE - Static variable in class loci.formats.in.SBIGReader

HEADER_SIZE - Static variable in class loci.formats.in.SeikoReader

HEADER_SIZE - Static variable in class loci.formats.in.SMCameraReader

HEADER_SIZE - Static variable in class loci.formats.in.UBMReader

HEADER_SIZE - Static variable in class loci.formats.in.WATOPReader

HEADER_SIZE - Static variable in class loci.formats.in.ZeissCZIReader

HEADER_SIZE - Static variable in class loci.poi.ddf.EscherBitmapBlip

HEADER_SIZE - Static variable in class loci.poi.ddf.EscherBlipRecord

HEADER_SIZE - Static variable in class loci.poi.ddf.EscherBlipWMFRecord

HEADER_SIZE - Static variable in class loci.poi.ddf.EscherMetafileBlip

HEADER_SIZE - Static variable in class loci.poi.ddf.EscherPictBlip

HeaderBlockConstants - Interface in loci.poi.poifs.storage

Constants used in reading/writing the Header block

HeaderBlockReader - Class in loci.poi.poifs.storage

The block containing the archive header

HeaderBlockReader(InputStream, int) - Constructor for class loci.poi.poifs.storage.HeaderBlockReader

create a new HeaderBlockReader from an InputStream

HeaderBlockWriter - Class in loci.poi.poifs.storage

The block containing the archive header

HeaderBlockWriter(int) - Constructor for class loci.poi.poifs.storage.HeaderBlockWriter

Create a single instance initialized with default values

HeaderBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent an Image Header Box of JPEG JP2 file format.

HeaderBox(int, int, int, int, int, int, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Create an Image Header Box from the element values.

HeaderBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Create an Image Header Box using the content data.

HeaderBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Constructs an Image Header Box from a Node.

HeaderDecoder - Class in jj2000.j2k.codestream.reader

This class reads Main and Tile-part headers from the codestream.

HeaderDecoder(RandomAccessIO, J2KImageReadParamJava, HeaderInfo) - Constructor for class jj2000.j2k.codestream.reader.HeaderDecoder

Creates a HeaderDecoder instance and read in two passes the main header of the codestream.

HeaderEncoder - Class in jj2000.j2k.codestream.writer

This class writes almost of the markers and marker segments in main header and in tile-part headers.

HeaderEncoder(ImgData, boolean[], ForwardWT, Tiler, J2KImageWriteParamJava, ROIScaler, PostCompRateAllocator) - Constructor for class jj2000.j2k.codestream.writer.HeaderEncoder

Initializes the header writer with the references to the coding chain.

headerIFDs - Variable in class loci.formats.in.LeicaReader

Array of IFD-like structures containing metadata.

HeaderInfo - Class in jj2000.j2k.codestream

Classe that holds information found in the marker segments of the main and tile-part headers.

HeaderInfo() - Constructor for class jj2000.j2k.codestream.HeaderInfo

HeaderInfo.COC - Class in jj2000.j2k.codestream

Internal class holding information found in the COC marker segments

HeaderInfo.COC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COC

HeaderInfo.COD - Class in jj2000.j2k.codestream

Internal class holding information found in the COD marker segments

HeaderInfo.COD() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COD

HeaderInfo.COM - Class in jj2000.j2k.codestream

Internal class holding information found in the COM marker segments

HeaderInfo.COM() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COM

HeaderInfo.CRG - Class in jj2000.j2k.codestream

Internal class holding information found in the CRG marker segment

HeaderInfo.CRG() - Constructor for class jj2000.j2k.codestream.HeaderInfo.CRG

HeaderInfo.POC - Class in jj2000.j2k.codestream

Internal class holding information found in the POC marker segments

HeaderInfo.POC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.POC

HeaderInfo.QCC - Class in jj2000.j2k.codestream

Internal class holding information found in the QCC marker segments

HeaderInfo.QCC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.QCC

HeaderInfo.QCD - Class in jj2000.j2k.codestream

Internal class holding information found in the QCD marker segments

HeaderInfo.QCD() - Constructor for class jj2000.j2k.codestream.HeaderInfo.QCD

HeaderInfo.RGN - Class in jj2000.j2k.codestream

Internal class holding information found in the RGN marker segments

HeaderInfo.RGN() - Constructor for class jj2000.j2k.codestream.HeaderInfo.RGN

HeaderInfo.SIZ - Class in jj2000.j2k.codestream

Internal class holding information found in the SIZ marker segment

HeaderInfo.SIZ() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SIZ

HeaderInfo.SOT - Class in jj2000.j2k.codestream

Internal class holding information found in the SOt marker segments

HeaderInfo.SOT() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SOT

headerPixelType - Variable in class loci.formats.in.JPEG2000MetadataParser

Pixel type as specified in the header.

headerPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

HeaderRecord - Class in loci.poi.hssf.record

Title: Header Record

HeaderRecord() - Constructor for class loci.poi.hssf.record.HeaderRecord

HeaderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HeaderRecord

Constructs an Header record and sets its fields appropriately.

headerRecord - Variable in class loci.poi.hssf.usermodel.HSSFHeader

headerSize - Variable in class loci.formats.in.FEIReader

headerSize - Variable in class loci.formats.in.OxfordInstrumentsReader

headerSize - Variable in class loci.formats.in.SpiderReader

headerSizeC - Variable in class loci.formats.in.JPEG2000MetadataParser

Number of channels the image has as specified in the header.

headerSizeX - Variable in class loci.formats.in.JPEG2000MetadataParser

Width of the image as specified in the header.

headerSizeY - Variable in class loci.formats.in.JPEG2000MetadataParser

Height of the image as specified in the header.

headerValid - Variable in class loci.formats.in.SDTInfo

headLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Length of main and tile-parts headers

HECTO(Unit<T>) - Static method in class ome.units.UNITS

height - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The image's height in pixels.

height - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The original image height.

height - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

height - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

height - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

The image height.

height - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

height - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

height - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

The original image height.

height - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

The image height.

height - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

height - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

height - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

The original image height.

height - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

height - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

height - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Image height

height - Variable in class loci.common.Region

height - Variable in class loci.formats.codec.CodecOptions

Height, in pixels, of the image.

height - Variable in class loci.formats.codec.JPEGTileDecoder.TileConsumer

height - Variable in class loci.formats.in.BaseZeissReader.Shape

height - Variable in class loci.formats.in.CellSensReader.Pyramid

height - Variable in class loci.formats.in.CellVoyagerReader.AreaInfo

height - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

height - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

height - Variable in class loci.formats.in.SDTInfo

height - Variable in class loci.formats.out.LegacyQTWriter

Frame height.

height - Variable in class loci.formats.tools.AmiraParameters

height - Variable in class loci.poi.hssf.usermodel.FontDetails

HEIGHT - Static variable in class loci.tests.testng.ConversionTest

height - Variable in class ome.xml.model.Mask

height - Variable in class ome.xml.model.Rectangle

heightMinus1 - Variable in class ome.jxr.parser.DatastreamParser

HELIOS_TAG - Static variable in class loci.formats.in.FEITiffReader

HELP_MENU - Static variable in class loci.plugins.shortcut.ShortcutPanel

Name of the 'About Plugins' submenu.

helper - Variable in class loci.formats.gui.SignedColorModel

helper - Variable in class loci.formats.gui.SignedShortBuffer

helper - Variable in class loci.formats.gui.UnsignedIntColorModel

helper - Variable in class loci.formats.in.DicomReader

helper - Variable in class loci.formats.in.FilePatternReader

helper - Variable in class loci.formats.in.NRRDReader

Helper reader.

helperReader - Variable in class loci.formats.in.HitachiReader

HERTZ - Static variable in class ome.units.UNITS

hex2Rgb(String) - Static method in class loci.formats.in.CellH5Reader

HexDump - Class in loci.poi.util

dump data in hexadecimal format; derived from a HexDump utility I wrote in June 2001.

HexDump() - Constructor for class loci.poi.util.HexDump

HexRead - Class in loci.poi.util

Utilities to read hex from files.

HexRead() - Constructor for class loci.poi.util.HexRead

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.AQUA

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLACK

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BROWN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.CORAL

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GOLD

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.INDIGO

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LAVENDER

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIME

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.MAROON

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ORANGE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ORCHID

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PINK

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.RED

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ROSE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TAN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.WHITE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW

hFilter - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The horizontal analysis filter used to decompose this subband.

hFilter - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The horizontal analysis filter used to recompose this subband, from its childs.

hh - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child HH

hh - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

hh - Variable in class loci.formats.codec.JPEGTileDecoder.TileConsumer

HHZ - Static variable in class ome.units.UNITS

hi - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

hi - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reference to the HeaderInfo instance (used when reading SOT marker segments)

hi - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The reference to the HeaderInfo instance holding the information found in headers

hidden - Static variable in class loci.poi.hssf.record.ColumnInfoRecord

hidden - Static variable in class loci.poi.hssf.record.WindowOneRecord

HIDDEN_LAYER - Static variable in class loci.formats.in.CellSensReader

HIDE_ALL - Static variable in class loci.poi.hssf.record.HideObjRecord

HideObjRecord - Class in loci.poi.hssf.record

Title: Hide Object Record

HideObjRecord() - Constructor for class loci.poi.hssf.record.HideObjRecord

HideObjRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HideObjRecord

Constructs an HideObj record and sets its fields appropriately.

HIGH_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy

highByte - Static variable in class loci.poi.hssf.record.UnicodeString

highFields - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

A mapping of Integer tag numbers to TIFFFields for fields which are not low tag numbered.

HIS_MAGIC_STRING - Static variable in class loci.formats.in.HISReader

HISReader - Class in loci.formats.in

HISReader is the file format reader for Hamamatsu .his files.

HISReader() - Constructor for class loci.formats.in.HISReader

Constructs a new Hamamatsu .his reader.

HISTOLOGY_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the histology domain.

HISTORY_KEYS - Static variable in class loci.formats.in.ICSReader

HISTORY_MASK - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default for a normal sheet (0x41)

hit(Rectangle, Shape, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

hit(Rectangle, Shape, boolean) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

HitachiReader - Class in loci.formats.in

HitachiReader is the file format reader for S-4800 files.

HitachiReader() - Constructor for class loci.formats.in.HitachiReader

Constructs a new Hitachi reader.

hitClip(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

hl - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child HL

HM - Static variable in class ome.units.UNITS

Holder - Class in mdbtools.libmdb

Holder() - Constructor for class mdbtools.libmdb.Holder

horizontal - Variable in class loci.poi.hssf.record.BarRecord

HORIZONTAL_ALIGNMENT_BOTTOM - Static variable in class loci.poi.hssf.record.TextRecord

HORIZONTAL_ALIGNMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord

HORIZONTAL_ALIGNMENT_JUSTIFY - Static variable in class loci.poi.hssf.record.TextRecord

HORIZONTAL_ALIGNMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord

HORIZONTAL_FLIP - Static variable in class loci.formats.in.FluoviewReader

HORIZONTAL_SID - Static variable in class loci.poi.hssf.record.PageBreakRecord

HORIZONTAL_TEXT_ALIGNMENT_CENTERED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

HORIZONTAL_TEXT_ALIGNMENT_JUSTIFIED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

HORIZONTAL_TEXT_ALIGNMENT_LEFT_ALIGNED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

HORIZONTAL_TEXT_ALIGNMENT_RIGHT_ALIGNED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

horizontalBorder - Variable in class loci.poi.hssf.record.DatRecord

HorizontalPageBreakRecord - Class in loci.poi.hssf.record

HorizontalPageBreak record that stores page breaks at rows

HorizontalPageBreakRecord() - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord

HorizontalPageBreakRecord(short) - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord

HorizontalPageBreakRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord

HorizontalTextAlignment - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

horz - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Black and white horizontal mode table.

horzMode - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Horizontal mode table.

HOST_COMPUTER - Static variable in class loci.formats.tiff.IFD

hostnames - Variable in class loci.formats.in.FlexReader.MeaHandler

HOT_PIXEL_CORRECTION - Static variable in class loci.formats.in.CellSensReader

HPA - Static variable in class ome.units.UNITS

hpImagePlaneUniformFlag - Variable in class ome.jxr.parser.DatastreamParser

HPSFException - Exception in loci.poi.hpsf

This exception is the superclass of all other checked exceptions thrown in this package.

HPSFException() - Constructor for exception loci.poi.hpsf.HPSFException

Creates an HPSFException.

HPSFException(String) - Constructor for exception loci.poi.hpsf.HPSFException

Creates an HPSFException with a message string.

HPSFException(Throwable) - Constructor for exception loci.poi.hpsf.HPSFException

Creates a new HPSFException with a reason.

HPSFException(String, Throwable) - Constructor for exception loci.poi.hpsf.HPSFException

Creates an HPSFException with a message string and a reason.

HPSFRuntimeException - Exception in loci.poi.hpsf

This exception is the superclass of all other unchecked exceptions thrown in this package.

HPSFRuntimeException() - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException.

HPSFRuntimeException(String) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException with a message string.

HPSFRuntimeException(Throwable) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException with a reason.

HPSFRuntimeException(String, Throwable) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException with a message string and a reason.

HPSynthesisFilter - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The high-pass synthesis filter of the 9x7 wavelet transform

HPSynthesisFilter - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

The high-pass synthesis filter of the 5x3 wavelet transform

HRDGDFReader - Class in loci.formats.in

HRDGDFReader is the file format reader for the Gridded Data Format used by NOAA's Hurricane Research Division.

HRDGDFReader() - Constructor for class loci.formats.in.HRDGDFReader

Constructs a new Gridded Data Format reader.

href - Variable in class ome.xml.model.External

hRes - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

The cached horizontal/vertical resolutions.

HS - Static variable in class ome.units.UNITS

hscroll - Static variable in class loci.poi.hssf.record.WindowOneRecord

hsize - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

HSSF - Class in loci.poi.hssf.dev

File for HSSF testing/examples THIS IS NOT THE MAIN HSSF FILE!! This is a util for testing functionality.

HSSF(String) - Constructor for class loci.poi.hssf.dev.HSSF

Constructor HSSF - creates an HSSFStream from an InputStream.

HSSF(String, boolean) - Constructor for class loci.poi.hssf.dev.HSSF

Constructor HSSF - given a filename this outputs a sample sheet with just a set of rows/cells.

HSSF(String, String, boolean) - Constructor for class loci.poi.hssf.dev.HSSF

Constructor HSSF - takes in file - attempts to read it then reconstruct it

HSSFAnchor - Class in loci.poi.hssf.usermodel

An anchor is what specifics the position of a shape within a client object or within another containing shape.

HSSFAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFAnchor

HSSFAnchor(int, int, int, int) - Constructor for class loci.poi.hssf.usermodel.HSSFAnchor

HSSFCell - Class in loci.poi.hssf.usermodel

High level representation of a cell in a row of a spreadsheet.

HSSFCell(Workbook, Sheet, int, short) - Constructor for class loci.poi.hssf.usermodel.HSSFCell

Creates new Cell - Should only be called by HSSFRow.

HSSFCell(Workbook, Sheet, int, short, int) - Constructor for class loci.poi.hssf.usermodel.HSSFCell

Creates new Cell - Should only be called by HSSFRow.

HSSFCell(Workbook, Sheet, int, CellValueRecordInterface) - Constructor for class loci.poi.hssf.usermodel.HSSFCell

Creates an HSSFCell from a CellValueRecordInterface.

HSSFCell() - Constructor for class loci.poi.hssf.usermodel.HSSFCell

private constructor to prevent blank construction

HSSFCellStyle - Class in loci.poi.hssf.usermodel

High level representation of the style of a cell in a sheet of a workbook.

HSSFCellStyle(short, ExtendedFormatRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFCellStyle

Creates new HSSFCellStyle why would you want to do this??

HSSFChildAnchor - Class in loci.poi.hssf.usermodel

HSSFChildAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFChildAnchor

HSSFChildAnchor(int, int, int, int) - Constructor for class loci.poi.hssf.usermodel.HSSFChildAnchor

HSSFClientAnchor - Class in loci.poi.hssf.usermodel

A client anchor is attached to an excel worksheet.

HSSFClientAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFClientAnchor

Creates a new client anchor and defaults all the anchor positions to 0.

HSSFClientAnchor(int, int, int, int, short, int, short, int) - Constructor for class loci.poi.hssf.usermodel.HSSFClientAnchor

Creates a new client anchor and sets the top-left and bottom-right coordinates of the anchor.

HSSFColor - Class in loci.poi.hssf.util

Intends to provide support for the very evil index to triplet issue and will likely replace the color contants interface for HSSF 2.0.

HSSFColor() - Constructor for class loci.poi.hssf.util.HSSFColor

Creates a new instance of HSSFColor

HSSFColor.AQUA - Class in loci.poi.hssf.util

Class AQUA

HSSFColor.AQUA() - Constructor for class loci.poi.hssf.util.HSSFColor.AQUA

HSSFColor.AUTOMATIC - Class in loci.poi.hssf.util

Special Default/Normal/Automatic color.

HSSFColor.AUTOMATIC() - Constructor for class loci.poi.hssf.util.HSSFColor.AUTOMATIC

HSSFColor.BLACK - Class in loci.poi.hssf.util

Class BLACK

HSSFColor.BLACK() - Constructor for class loci.poi.hssf.util.HSSFColor.BLACK

HSSFColor.BLUE - Class in loci.poi.hssf.util

Class BLUE

HSSFColor.BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.BLUE

HSSFColor.BLUE_GREY - Class in loci.poi.hssf.util

Class BLUE_GREY

HSSFColor.BLUE_GREY() - Constructor for class loci.poi.hssf.util.HSSFColor.BLUE_GREY

HSSFColor.BRIGHT_GREEN - Class in loci.poi.hssf.util

Class BRIGHT_GREEN

HSSFColor.BRIGHT_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

HSSFColor.BROWN - Class in loci.poi.hssf.util

Class BROWN

HSSFColor.BROWN() - Constructor for class loci.poi.hssf.util.HSSFColor.BROWN

HSSFColor.CORAL - Class in loci.poi.hssf.util

Class CORAL

HSSFColor.CORAL() - Constructor for class loci.poi.hssf.util.HSSFColor.CORAL

HSSFColor.CORNFLOWER_BLUE - Class in loci.poi.hssf.util

Class CORNFLOWER_BLUE

HSSFColor.CORNFLOWER_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

HSSFColor.DARK_BLUE - Class in loci.poi.hssf.util

Class DARK_BLUE

HSSFColor.DARK_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_BLUE

HSSFColor.DARK_GREEN - Class in loci.poi.hssf.util

Class DARK_GREEN

HSSFColor.DARK_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_GREEN

HSSFColor.DARK_RED - Class in loci.poi.hssf.util

Class DARK_RED

HSSFColor.DARK_RED() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_RED

HSSFColor.DARK_TEAL - Class in loci.poi.hssf.util

Class DARK_TEAL

HSSFColor.DARK_TEAL() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_TEAL

HSSFColor.DARK_YELLOW - Class in loci.poi.hssf.util

Class DARK_YELLOW

HSSFColor.DARK_YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

HSSFColor.GOLD - Class in loci.poi.hssf.util

Class GOLD

HSSFColor.GOLD() - Constructor for class loci.poi.hssf.util.HSSFColor.GOLD

HSSFColor.GREEN - Class in loci.poi.hssf.util

Class GREEN

HSSFColor.GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.GREEN

HSSFColor.GREY_25_PERCENT - Class in loci.poi.hssf.util

Class GREY_25_PERCENT

HSSFColor.GREY_25_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

HSSFColor.GREY_40_PERCENT - Class in loci.poi.hssf.util

Class GREY_40_PERCENT

HSSFColor.GREY_40_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

HSSFColor.GREY_50_PERCENT - Class in loci.poi.hssf.util

Class GREY_50_PERCENT

HSSFColor.GREY_50_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

HSSFColor.GREY_80_PERCENT - Class in loci.poi.hssf.util

Class GREY_80_PERCENT

HSSFColor.GREY_80_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

HSSFColor.INDIGO - Class in loci.poi.hssf.util

Class INDIGO

HSSFColor.INDIGO() - Constructor for class loci.poi.hssf.util.HSSFColor.INDIGO

HSSFColor.LAVENDER - Class in loci.poi.hssf.util

Class LAVENDER

HSSFColor.LAVENDER() - Constructor for class loci.poi.hssf.util.HSSFColor.LAVENDER

HSSFColor.LEMON_CHIFFON - Class in loci.poi.hssf.util

Class LEMON_CHIFFON

HSSFColor.LEMON_CHIFFON() - Constructor for class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

HSSFColor.LIGHT_BLUE - Class in loci.poi.hssf.util

Class LIGHT_BLUE

HSSFColor.LIGHT_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

HSSFColor.LIGHT_CORNFLOWER_BLUE - Class in loci.poi.hssf.util

Class LIGHT_CORNFLOWER_BLUE

HSSFColor.LIGHT_CORNFLOWER_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

HSSFColor.LIGHT_GREEN - Class in loci.poi.hssf.util

Class LIGHT_GREEN

HSSFColor.LIGHT_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

HSSFColor.LIGHT_ORANGE - Class in loci.poi.hssf.util

Class LIGHT_ORANGE

HSSFColor.LIGHT_ORANGE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

HSSFColor.LIGHT_TURQUOISE - Class in loci.poi.hssf.util

Class LIGHT_TURQUOISE

HSSFColor.LIGHT_TURQUOISE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

HSSFColor.LIGHT_YELLOW - Class in loci.poi.hssf.util

Class LIGHT_YELLOW

HSSFColor.LIGHT_YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

HSSFColor.LIME - Class in loci.poi.hssf.util

Class LIME

HSSFColor.LIME() - Constructor for class loci.poi.hssf.util.HSSFColor.LIME

HSSFColor.MAROON - Class in loci.poi.hssf.util

Class MAROON

HSSFColor.MAROON() - Constructor for class loci.poi.hssf.util.HSSFColor.MAROON

HSSFColor.OLIVE_GREEN - Class in loci.poi.hssf.util

Class OLIVE_GREEN

HSSFColor.OLIVE_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

HSSFColor.ORANGE - Class in loci.poi.hssf.util

Class ORANGE

HSSFColor.ORANGE() - Constructor for class loci.poi.hssf.util.HSSFColor.ORANGE

HSSFColor.ORCHID - Class in loci.poi.hssf.util

Class ORCHID

HSSFColor.ORCHID() - Constructor for class loci.poi.hssf.util.HSSFColor.ORCHID

HSSFColor.PALE_BLUE - Class in loci.poi.hssf.util

Class PALE_BLUE

HSSFColor.PALE_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.PALE_BLUE

HSSFColor.PINK - Class in loci.poi.hssf.util

Class PINK

HSSFColor.PINK() - Constructor for class loci.poi.hssf.util.HSSFColor.PINK

HSSFColor.PLUM - Class in loci.poi.hssf.util

Class PLUM

HSSFColor.PLUM() - Constructor for class loci.poi.hssf.util.HSSFColor.PLUM

HSSFColor.RED - Class in loci.poi.hssf.util

Class RED

HSSFColor.RED() - Constructor for class loci.poi.hssf.util.HSSFColor.RED

HSSFColor.ROSE - Class in loci.poi.hssf.util

Class ROSE

HSSFColor.ROSE() - Constructor for class loci.poi.hssf.util.HSSFColor.ROSE

HSSFColor.ROYAL_BLUE - Class in loci.poi.hssf.util

Class ROYAL_BLUE

HSSFColor.ROYAL_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

HSSFColor.SEA_GREEN - Class in loci.poi.hssf.util

Class SEA_GREEN

HSSFColor.SEA_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.SEA_GREEN

HSSFColor.SKY_BLUE - Class in loci.poi.hssf.util

Class SKY_BLUE

HSSFColor.SKY_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.SKY_BLUE

HSSFColor.TAN - Class in loci.poi.hssf.util

Class TAN

HSSFColor.TAN() - Constructor for class loci.poi.hssf.util.HSSFColor.TAN

HSSFColor.TEAL - Class in loci.poi.hssf.util

Class TEAL

HSSFColor.TEAL() - Constructor for class loci.poi.hssf.util.HSSFColor.TEAL

HSSFColor.TURQUOISE - Class in loci.poi.hssf.util

Class TURQUOISE

HSSFColor.TURQUOISE() - Constructor for class loci.poi.hssf.util.HSSFColor.TURQUOISE

HSSFColor.VIOLET - Class in loci.poi.hssf.util

Class VIOLET

HSSFColor.VIOLET() - Constructor for class loci.poi.hssf.util.HSSFColor.VIOLET

HSSFColor.WHITE - Class in loci.poi.hssf.util

Class WHITE

HSSFColor.WHITE() - Constructor for class loci.poi.hssf.util.HSSFColor.WHITE

HSSFColor.YELLOW - Class in loci.poi.hssf.util

Class YELLOW

HSSFColor.YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.YELLOW

HSSFComment - Class in loci.poi.hssf.usermodel

Represents a cell comment - a sticky note associated with a cell.

HSSFComment(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFComment

Construct a new comment with the given parent and anchor.

HSSFComment(NoteRecord, TextObjectRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFComment

HSSFDataFormat - Class in loci.poi.hssf.usermodel

Utility to identify builtin formats.

HSSFDataFormat(Workbook) - Constructor for class loci.poi.hssf.usermodel.HSSFDataFormat

Construncts a new data formatter.

HSSFDateUtil - Class in loci.poi.hssf.usermodel

Contains methods for dealing with Excel dates.

HSSFDateUtil() - Constructor for class loci.poi.hssf.usermodel.HSSFDateUtil

HSSFErrorConstants - Interface in loci.poi.hssf.usermodel

contains constants representing Excel error codes.

HSSFEventFactory - Class in loci.poi.hssf.eventusermodel

Low level event based HSSF reader.

HSSFEventFactory() - Constructor for class loci.poi.hssf.eventusermodel.HSSFEventFactory

Creates a new instance of HSSFEventFactory

HSSFFont - Class in loci.poi.hssf.usermodel

Represents a Font used in a workbook.

HSSFFont(short, FontRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFFont

Creates a new instance of HSSFFont

HSSFFooter - Class in loci.poi.hssf.usermodel

Class to read and manipulate the footer.

HSSFFooter(FooterRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFFooter

Constructor.

HSSFHeader - Class in loci.poi.hssf.usermodel

Class to read and manipulate the header.

HSSFHeader(HeaderRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFHeader

Constructor.

HSSFListener - Interface in loci.poi.hssf.eventusermodel

Interface for use with the HSSFRequest and HSSFEventFactory.

HSSFName - Class in loci.poi.hssf.usermodel

Title: High Level Represantion of Named Range

HSSFName(Workbook, NameRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFName

Creates new HSSFName - called by HSSFWorkbook to create a sheet from scratch.

HSSFObjectData - Class in loci.poi.hssf.usermodel

Represents binary object (i.e.

HSSFObjectData(ObjRecord, POIFSFileSystem) - Constructor for class loci.poi.hssf.usermodel.HSSFObjectData

Constructs object data by wrapping a lower level object record.

HSSFPalette - Class in loci.poi.hssf.usermodel

Represents a workbook color palette.

HSSFPalette(PaletteRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFPalette

HSSFPalette.CustomColor - Class in loci.poi.hssf.usermodel

HSSFPalette.CustomColor(short, byte[]) - Constructor for class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

HSSFPalette.CustomColor(short, byte, byte, byte) - Constructor for class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

HSSFPatriarch - Class in loci.poi.hssf.usermodel

The patriarch is the toplevel container for shapes in a sheet.

HSSFPatriarch(HSSFSheet) - Constructor for class loci.poi.hssf.usermodel.HSSFPatriarch

Creates the patriarch.

HSSFPicture - Class in loci.poi.hssf.usermodel

Represents a escher picture.

HSSFPicture(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFPicture

Constructs a picture object.

HSSFPictureData - Class in loci.poi.hssf.usermodel

Represents binary data stored in the file.

HSSFPictureData(EscherBlipRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFPictureData

Constructs a picture object.

HSSFPolygon - Class in loci.poi.hssf.usermodel

HSSFPolygon(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFPolygon

HSSFPrintSetup - Class in loci.poi.hssf.usermodel

Used to modify the print setup.

HSSFPrintSetup(PrintSetupRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFPrintSetup

Constructor.

HSSFRequest - Class in loci.poi.hssf.eventusermodel

An HSSFRequest object should be constructed registering an instance or multiple instances of HSSFListener with each Record.sid you wish to listen for.

HSSFRequest() - Constructor for class loci.poi.hssf.eventusermodel.HSSFRequest

Creates a new instance of HSSFRequest

HSSFRichTextString - Class in loci.poi.hssf.usermodel

Rich text unicode string.

HSSFRichTextString() - Constructor for class loci.poi.hssf.usermodel.HSSFRichTextString

HSSFRichTextString(String) - Constructor for class loci.poi.hssf.usermodel.HSSFRichTextString

HSSFRichTextString(Workbook, LabelSSTRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFRichTextString

HSSFRow - Class in loci.poi.hssf.usermodel

High level representation of a row of a spreadsheet.

HSSFRow() - Constructor for class loci.poi.hssf.usermodel.HSSFRow

HSSFRow(Workbook, Sheet, int) - Constructor for class loci.poi.hssf.usermodel.HSSFRow

Creates new HSSFRow from scratch.

HSSFRow(Workbook, Sheet, RowRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFRow

Creates an HSSFRow from a low level RowRecord object.

HSSFRow.CellIterator - Class in loci.poi.hssf.usermodel

HSSFRow.CellIterator() - Constructor for class loci.poi.hssf.usermodel.HSSFRow.CellIterator

HSSFShape - Class in loci.poi.hssf.usermodel

An abstract shape.

HSSFShape(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFShape

Create a new shape with the specified parent and anchor.

HSSFShapeContainer - Interface in loci.poi.hssf.usermodel

An interface that indicates whether a class can contain children.

HSSFShapeGroup - Class in loci.poi.hssf.usermodel

A shape group may contain other shapes.

HSSFShapeGroup(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFShapeGroup

HSSFSheet - Class in loci.poi.hssf.usermodel

High level representation of a worksheet.

HSSFSheet(HSSFWorkbook) - Constructor for class loci.poi.hssf.usermodel.HSSFSheet

Creates new HSSFSheet - called by HSSFWorkbook to create a sheet from scratch.

HSSFSheet(HSSFWorkbook, Sheet) - Constructor for class loci.poi.hssf.usermodel.HSSFSheet

Creates an HSSFSheet representing the given Sheet object.

HSSFSimpleShape - Class in loci.poi.hssf.usermodel

Represents a simple shape such as a line, rectangle or oval.

HSSFSimpleShape(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFSimpleShape

HSSFTextbox - Class in loci.poi.hssf.usermodel

A textbox is a shape that may hold a rich text string.

HSSFTextbox(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFTextbox

Construct a new textbox with the given parent and anchor.

HSSFUserException - Exception in loci.poi.hssf.eventusermodel

This exception is provided as a way for API users to throw exceptions from their event handling code.

HSSFUserException() - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException.

HSSFUserException(String) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException with a message string.

HSSFUserException(Throwable) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException with a reason.

HSSFUserException(String, Throwable) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException with a message string and a reason.

hssfworkbook - Variable in class loci.poi.hssf.dev.HSSF

HSSFWorkbook - Class in loci.poi.hssf.usermodel

High level representation of a workbook.

HSSFWorkbook() - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

Creates new HSSFWorkbook from scratch (start here!)

HSSFWorkbook(Workbook) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

HSSFWorkbook(POIFSFileSystem) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

HSSFWorkbook(POIFSFileSystem, boolean) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

given a POI POIFSFileSystem object, read in its Workbook and populate the high and low level models.

HSSFWorkbook(RandomAccessInputStream) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

HSSFWorkbook(RandomAccessInputStream, boolean) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

Companion to HSSFWorkbook(POIFSFileSystem), this constructs the POI filesystem around your inputstream.

ht - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

HashTable used to store marker segment byte buffers

HTM_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

HTML_REGEX - Static variable in class loci.formats.in.PerkinElmerReader

HTML_SUFFIX - Static variable in class loci.formats.in.VisitechReader

HUE - Static variable in class loci.formats.in.NikonReader

HuffmanCodec - Class in loci.formats.codec

This class implements Huffman decoding.

HuffmanCodec() - Constructor for class loci.formats.codec.HuffmanCodec

HuffmanCodec.Decoder - Class in loci.formats.codec

HuffmanCodec.Decoder() - Constructor for class loci.formats.codec.HuffmanCodec.Decoder

HuffmanCodec.Decoder(short[]) - Constructor for class loci.formats.codec.HuffmanCodec.Decoder

HuffmanCodecOptions - Class in loci.formats.codec

Options for compressing and decompressing Huffman data.

HuffmanCodecOptions() - Constructor for class loci.formats.codec.HuffmanCodecOptions

humidity - Variable in class loci.formats.in.ZeissCZIReader

humidity - Variable in class ome.xml.model.ImagingEnvironment

HV - Static variable in class ome.units.UNITS

HW - Static variable in class ome.units.UNITS

HZ - Static variable in class ome.units.UNITS

I

I - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The current index of each context

I - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The current index of each context

i(String) - Method in class loci.formats.in.PrairieMetadata

Converts the given string to an Integer, or null if incompatible.

i - Variable in class mdbtools.libmdb.Holder

i - Variable in class mdbtools.libmdb.MdbAny

I18N - Class in com.sun.media.imageio.plugins.bmp

I18N() - Constructor for class com.sun.media.imageio.plugins.bmp.I18N

I18N - Class in com.sun.media.imageio.stream

I18N() - Constructor for class com.sun.media.imageio.stream.I18N

I18N - Class in com.sun.media.imageioimpl.common

I18N() - Constructor for class com.sun.media.imageioimpl.common.I18N

I18N - Class in com.sun.media.imageioimpl.plugins.bmp

I18N() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.I18N

I18N - Class in com.sun.media.imageioimpl.plugins.clib

I18N() - Constructor for class com.sun.media.imageioimpl.plugins.clib.I18N

I18N - Class in com.sun.media.imageioimpl.plugins.jpeg

I18N() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg.I18N

I18N - Class in com.sun.media.imageioimpl.plugins.jpeg2000

I18N() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.I18N

I18N - Class in com.sun.media.imageioimpl.plugins.png

I18N() - Constructor for class com.sun.media.imageioimpl.plugins.png.I18N

I18N - Class in com.sun.media.imageioimpl.plugins.pnm

I18N() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.I18N

I18N - Class in com.sun.media.imageioimpl.plugins.raw

I18N() - Constructor for class com.sun.media.imageioimpl.plugins.raw.I18N

I18N - Class in com.sun.media.imageioimpl.plugins.tiff

I18N() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.I18N

I18N - Class in com.sun.media.imageioimpl.plugins.wbmp

I18N() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.I18N

I18N - Class in com.sun.media.jai.imageioimpl

I18N() - Constructor for class com.sun.media.jai.imageioimpl.I18N

I18N - Class in com.sun.media.jai.operator

I18N() - Constructor for class com.sun.media.jai.operator.I18N

I18NImpl - Class in com.sun.media.imageioimpl.common

Class to simplify use of internationalization message strings.

I18NImpl() - Constructor for class com.sun.media.imageioimpl.common.I18NImpl

I2IReader - Class in loci.formats.in

I2IReader is the file format reader for I2I files.

I2IReader() - Constructor for class loci.formats.in.I2IReader

Constructs a new I2I reader.

ICacheSource - Interface in loci.formats.cache

Interface for cache sources.

ICacheStrategy - Interface in loci.formats.cache

Interface for cache strategies.

iCbTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

ICC_ENABLED - Static variable in class loci.formats.in.CellSensReader

iccs - Variable in class jj2000.j2k.decoder.DecoderSpecs

ICC Profiling specifications

iceil(int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

icon - Variable in class loci.formats.gui.ImageViewer

icon - Variable in class loci.formats.gui.PreviewPane

ICON_IMAGE_SEQUENCE - Static variable in class loci.formats.in.DicomReader

iconic - Static variable in class loci.poi.hssf.record.WindowOneRecord

iconLabel - Variable in class loci.formats.gui.ImageViewer

iconLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

iconText - Variable in class loci.formats.gui.PreviewPane

iconTip - Variable in class loci.formats.gui.PreviewPane

iCrTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

ICSReader - Class in loci.formats.in

ICSReader is the file format reader for ICS (Image Cytometry Standard) files.

ICSReader() - Constructor for class loci.formats.in.ICSReader

Constructs a new ICSReader.

ICSWriter - Class in loci.formats.out

ICSWriter is the file format writer for ICS files.

ICSWriter() - Constructor for class loci.formats.out.ICSWriter

ictransf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

id - Variable in class loci.formats.gui.CacheComponent

File name that the cache is working with (debugging only).

id - Variable in class loci.formats.in.BaseZeissReader.Shape

id - Variable in class loci.formats.in.FlexReader.FilterGroup

id - Variable in class loci.formats.in.LeicaHandler.Laser

id - Variable in class loci.formats.in.LeicaReader.Detector

id - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane

File containing this plane.

id - Variable in class loci.formats.in.ZeissCZIReader.Segment

id - Variable in class loci.formats.in.ZeissTIFFReader.Channel

id - Variable in class loci.formats.in.ZeissTIFFReader.Slice

id - Variable in class loci.formats.in.ZeissTIFFReader.Timepoint

id - Variable in class loci.plugins.util.BFVirtualStack

id - Variable in class loci.poi.ddf.EscherProperty

id - Variable in class loci.poi.hpsf.Property

The property's ID.

id - Variable in class loci.poi.hpsf.Section.PropertyListEntry

id - Variable in class loci.tests.testng.FileHandleTest

id - Variable in class loci.tests.testng.FormatReaderTest

id - Variable in class loci.tests.testng.FormatWriterTest

id - Variable in class loci.tests.testng.Jpeg2000GrindTest

id - Variable in class loci.tests.testng.OpenBytesPerformanceTest

id - Variable in class loci.tests.testng.SubResolutionTest

id - Variable in enum ome.jxr.ifd.PixelFormat

id - Variable in enum ome.jxr.image.ComponentMode

id - Variable in class ome.xml.model.Annotation

id - Variable in class ome.xml.model.AnnotationRef

id - Variable in class ome.xml.model.Channel

id - Variable in class ome.xml.model.ChannelRef

id - Variable in class ome.xml.model.Dataset

id - Variable in class ome.xml.model.DatasetRef

id - Variable in class ome.xml.model.Detector

id - Variable in class ome.xml.model.DetectorSettings

id - Variable in class ome.xml.model.Dichroic

id - Variable in class ome.xml.model.DichroicRef

id - Variable in class ome.xml.model.Experiment

id - Variable in class ome.xml.model.Experimenter

id - Variable in class ome.xml.model.ExperimenterGroup

id - Variable in class ome.xml.model.ExperimenterGroupRef

id - Variable in class ome.xml.model.ExperimenterRef

id - Variable in class ome.xml.model.ExperimentRef

id - Variable in class ome.xml.model.Filter

id - Variable in class ome.xml.model.FilterRef

id - Variable in class ome.xml.model.FilterSet

id - Variable in class ome.xml.model.FilterSetRef

id - Variable in class ome.xml.model.Image

id - Variable in class ome.xml.model.ImageRef

id - Variable in class ome.xml.model.Instrument

id - Variable in class ome.xml.model.InstrumentRef

id - Variable in class ome.xml.model.Leader

id - Variable in class ome.xml.model.LightSource

id - Variable in class ome.xml.model.LightSourceSettings

id - Variable in class ome.xml.model.MicrobeamManipulation

id - Variable in class ome.xml.model.MicrobeamManipulationRef

id - Variable in class ome.xml.model.Objective

id - Variable in class ome.xml.model.ObjectiveSettings

id - Variable in class ome.xml.model.Pixels

id - Variable in class ome.xml.model.Plate

id - Variable in class ome.xml.model.PlateAcquisition

id - Variable in class ome.xml.model.PlateRef

id - Variable in class ome.xml.model.Project

id - Variable in class ome.xml.model.ProjectRef

id - Variable in class ome.xml.model.Pump

id - Variable in class ome.xml.model.Reagent

id - Variable in class ome.xml.model.ReagentRef

id - Variable in class ome.xml.model.ROI

id - Variable in class ome.xml.model.ROIRef

id - Variable in class ome.xml.model.Screen

id - Variable in class ome.xml.model.Shape

id - Variable in class ome.xml.model.Well

id - Variable in class ome.xml.model.WellSample

id - Variable in class ome.xml.model.WellSampleRef

ID_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the ID attribute.

idatCount - Variable in class loci.formats.in.APNGReader

IdDialog - Class in loci.plugins.in

Bio-Formats Importer id chooser dialog box.

IdDialog(ImportProcess) - Constructor for class loci.plugins.in.IdDialog

Creates an id chooser dialog for the Bio-Formats Importer.

Ident() - Method in class loci.poi.hssf.model.FormulaParser

Parse and Translate a String Identifier

idle - Variable in class jj2000.j2k.util.ThreadPool

The array of idle threads and the lock for the manipulation of the idle thread list.

idleComps - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The queue of idle compressors.

idLoc - Variable in class loci.plugins.in.ImportProcess

idMap - Static variable in class loci.common.Location

Map from given filenames to actual filenames.

idName - Variable in class loci.plugins.in.ImportProcess

ids - Variable in enum ome.jxr.image.BitDepth

ids - Variable in enum ome.jxr.image.FrequencyBand

ids - Variable in enum ome.jxr.image.InternalColorFormat

ids - Variable in enum ome.jxr.image.OutputColorFormat

idx - Variable in class jj2000.j2k.codestream.CBlkCoordInfo

The code-block horizontal and vertical indexes

idx - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The index of this compressor.

idx1Pos - Variable in class loci.formats.out.AVIWriter

idxmap_base_pg - Variable in class mdbtools.libmdb.MdbTableDef

idxmap_sz - Variable in class mdbtools.libmdb.MdbTableDef

IEnumerationHandler - Interface in ome.xml.model.enums.handlers

An enumeration provider for making OME data model enumerations available.

ifd - Variable in class loci.formats.in.LeicaSCNReader.Dimension

ifd - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane

IFD number of this plane.

IFD - Class in loci.formats.tiff

Data structure for working with TIFF Image File Directories (IFDs).

IFD() - Constructor for class loci.formats.tiff.IFD

IFD(IFD) - Constructor for class loci.formats.tiff.IFD

IFD - Class in ome.jxr.constants

Constants describing an IFD Container and its Entries.

IFD() - Constructor for class ome.jxr.constants.IFD

ifd - Variable in class ome.xml.model.TiffData

IFDContainer - Class in ome.jxr.ifd

Container holding information about IFD entries.

IFDContainer(long, short) - Constructor for class ome.jxr.ifd.IFDContainer

IFDContainers - Variable in class ome.jxr.parser.IFDParser

ifdCount - Variable in class loci.formats.tiff.TiffParser

ifdCounts - Variable in class loci.formats.out.OMETiffWriter

IFDEntry - Enum in ome.jxr.ifd

Enumeration of available IFD entries.

IFDEntry(int, IFDEntryType, int) - Constructor for enum ome.jxr.ifd.IFDEntry

IFDEntry(int, IFDEntryType, int, boolean) - Constructor for enum ome.jxr.ifd.IFDEntry

IFDEntryType - Enum in ome.jxr.ifd

Enumeration of data types used to define an IFD entry.

IFDEntryType(int, int) - Constructor for enum ome.jxr.ifd.IFDEntryType

IFDList - Class in loci.formats.tiff

Data structure for working with a list of TIFF IFDs.

IFDList() - Constructor for class loci.formats.tiff.IFDList

ifdList - Variable in class loci.formats.tiff.TiffParser

Cached list of IFDs in the current file.

IFDMap - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

ifdmap - Variable in class loci.formats.in.SVSReader

IFDMetadata - Class in ome.jxr.ifd

Provides access to metadata extracted from the IFD part of a JPEG XR file.

IFDMetadata(long) - Constructor for class ome.jxr.ifd.IFDMetadata

IFDMetadata - Variable in class ome.jxr.parser.IFDParser

ifdOffsets - Variable in class loci.formats.in.FlowSightReader

ifdParser - Variable in class ome.jxr.JXRReader

IFDParser - Class in ome.jxr.parser

Parses an IFD structure and fills container and extracts entries.

IFDParser(Parser, RandomAccessInputStream) - Constructor for class ome.jxr.parser.IFDParser

ifds - Variable in class loci.formats.in.APLReader

ifds - Variable in class loci.formats.in.CellSensReader

ifds - Variable in class loci.formats.in.EPSReader

ifds - Variable in class loci.formats.in.FlexReader.FlexFile

ifds - Variable in class loci.formats.in.FV1000Reader

ifds - Variable in class loci.formats.in.LeicaReader

ifds - Variable in class loci.formats.in.MinimalTiffReader

List of IFDs for the current TIFF.

ifds - Variable in class loci.tests.testng.Jpeg2000GrindTest

All the IFDs we have used for each "plane".

ifdsList - Variable in class loci.formats.in.ZeissLSMReader

IFDType - Enum in loci.formats.tiff

An enumeration of IFD types.

IFDType(int, int) - Constructor for enum loci.formats.tiff.IFDType

Default constructor.

ifloor(int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

IFormatHandler - Interface in loci.formats

Interface for all biological file format readers and writers.

IFormatReader - Interface in loci.formats

Interface for all biological file format readers.

IFormatWidgets - Interface in loci.plugins.config

Interface for defining custom widgets for a specific file format reader.

IFormatWriter - Interface in loci.formats

Interface for all biological file format writers.

iGCbTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

iGCrTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

ignore - Variable in class loci.plugins.util.SearchableWindow.SearchBox

ignoreCase - Variable in class loci.plugins.util.SearchableWindow.SearchBox

iGYTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

ih - Variable in class loci.formats.in.GIFReader

Current image rectangle.

IHB_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Length of Image Header Box

iis - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The input stream where reads from

iis - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

The ImageInputStream that is wrapped

iis - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

The input stream where reads from

iis - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

The input stream we read from

iis - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

iis - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

The input stream where reads from

iis - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

The input stream where reads from

iis - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The input stream we read from

iis - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

The input stream where reads from

IISRandomAccessIO - Class in com.sun.media.imageioimpl.plugins.jpeg2000

A wrapper for converting an ImageInputStream into a RandomAccessIO.

IISRandomAccessIO(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Creates a RandomAccessIO instance from the supplied ImageInputStream.

IJStatusEchoer - Class in loci.plugins.util

Echoes status messages to the ImageJ status bar.

IJStatusEchoer() - Constructor for class loci.plugins.util.IJStatusEchoer

IllegalPropertySetDataException - Exception in loci.poi.hpsf

This exception is thrown when there is an illegal value set in a PropertySet.

IllegalPropertySetDataException() - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalPropertySetDataException(String) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalPropertySetDataException(Throwable) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalPropertySetDataException(String, Throwable) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalVariantTypeException - Exception in loci.poi.hpsf

This exception is thrown if HPSF encounters a variant type that is illegal in the current context.

IllegalVariantTypeException(long, Object, String) - Constructor for exception loci.poi.hpsf.IllegalVariantTypeException

Constructor

IllegalVariantTypeException(long, Object) - Constructor for exception loci.poi.hpsf.IllegalVariantTypeException

Constructor

ILLUM_CHANNEL_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader

ILLUM_CHANNEL_ATTENUATION - Static variable in class loci.formats.in.ZeissLSMReader

ILLUM_CHANNEL_NAME - Static variable in class loci.formats.in.ZeissLSMReader

ILLUM_CHANNEL_WAVELENGTH - Static variable in class loci.formats.in.ZeissLSMReader

ILLUMINATION - Static variable in class loci.formats.FormatTools

Identifies the Illumination dimensional type, representing a dimension consisting of illuminations.

illumination - Variable in class loci.formats.in.ZeissCZIReader.Channel

illuminationLabels - Variable in class loci.formats.in.ZeissCZIReader

illuminations - Variable in class loci.formats.in.FV1000Reader

illuminations - Variable in class loci.formats.in.ZeissCZIReader

illuminationType - Variable in class ome.xml.model.Channel

IlluminationType - Enum in ome.xml.model.enums

IlluminationType(String) - Constructor for enum ome.xml.model.enums.IlluminationType

IlluminationTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for IlluminationType.

IlluminationTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

illumNA - Variable in class loci.formats.in.LeicaSCNReader.Image

illumSource - Variable in class loci.formats.in.LeicaSCNReader.Image

IM3Reader - Class in loci.formats.in

IM3Reader() - Constructor for class loci.formats.in.IM3Reader

Construct an uninitialized reader of .im3 files.

IM3Reader.BooleanIM3Record - Class in loci.formats.in

A record containing boolean values

IM3Reader.BooleanIM3Record(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.BooleanIM3Record

IM3Reader.ContainerRecord - Class in loci.formats.in

IM3Reader.ContainerRecord(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.ContainerRecord

IM3Reader.FloatIM3Record - Class in loci.formats.in

IM3Reader.FloatIM3Record(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.FloatIM3Record

IM3Reader.IM3Record - Class in loci.formats.in

IM3Reader.IM3Record(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.IM3Record

IM3Reader.IntIM3Record - Class in loci.formats.in

IM3Reader.IntIM3Record(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.IntIM3Record

IM3Reader.Spectrum - Class in loci.formats.in

IM3Reader.Spectrum(IRandomAccess, IM3Reader.ContainerRecord) - Constructor for class loci.formats.in.IM3Reader.Spectrum

Construct a spectrum by parsing a Spectrum record

IM3Reader.StringIM3Record - Class in loci.formats.in

IM3Reader.StringIM3Record(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.StringIM3Record

ImaconReader - Class in loci.formats.in

ImaconReader is the file format reader for Imacon .fff (TIFF) files.

ImaconReader() - Constructor for class loci.formats.in.ImaconReader

Constructs a new Imacon reader.

ImaconReader.ImaconHandler - Class in loci.formats.in

ImaconReader.ImaconHandler() - Constructor for class loci.formats.in.ImaconReader.ImaconHandler

image - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The final destination image.

image - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

IMAGE - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

image - Variable in class loci.formats.in.LegacyQTReader

Image containing current frame.

image - Variable in class loci.formats.in.VeecoReader

Image - Class in ome.jxr.constants

Constants found in the codestream header structure.

Image() - Constructor for class ome.jxr.constants.Image

Image - Class in ome.xml.model

Image() - Constructor for class ome.xml.model.Image

Default constructor.

Image(Element, OMEModel) - Constructor for class ome.xml.model.Image

Constructs Image recursively from an XML DOM tree.

Image(Image) - Constructor for class ome.xml.model.Image

Copy constructor.

image - Variable in class ome.xml.model.WellSample

IMAGE_BOUNDARY - Static variable in class loci.formats.in.CellSensReader

IMAGE_COLLECTION_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

IMAGE_DESCRIPTION - Static variable in class loci.formats.tiff.IFD

IMAGE_FRAME_VOLUME - Static variable in class loci.formats.in.CellSensReader

IMAGE_HEADER_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

JP2 Header boxes

IMAGE_LENGTH - Static variable in class loci.formats.tiff.IFD

IMAGE_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

IMAGE_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

IMAGE_PATH - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

IMAGE_PRO_TAG_1 - Static variable in class loci.formats.in.SEQReader

An array of shorts (length 12) with identical values in all of our samples; assuming this is some sort of format identifier.

IMAGE_PRO_TAG_2 - Static variable in class loci.formats.in.SEQReader

Frame rate.

IMAGE_PRO_TAG_3 - Static variable in class loci.formats.in.SEQReader

IMAGE_SEPARATOR - Static variable in class loci.formats.in.GIFReader

IMAGE_SOURCE_DATA - Static variable in class loci.formats.in.PhotoshopTiffReader

IMAGE_TAG - Static variable in class ome.specification.XMLWriter

Identifies the Image tag.

IMAGE_TYPE_1 - Static variable in class loci.formats.in.OpenlabReader

Tag types.

IMAGE_TYPE_2 - Static variable in class loci.formats.in.OpenlabReader

IMAGE_TYPES - Static variable in class loci.formats.in.DeltavisionReader

IMAGE_WIDTH - Static variable in class loci.formats.tiff.IFD

imageCA - Variable in class ome.xml.meta.AbstractOMEXMLMetadata

DOM element that backs the first Image's CustomAttributes node.

imageComplete(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

imageComplete(ImageWriter) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter

imageComplete(int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

imageCount - Variable in class loci.formats.CoreMetadata

Total number of images.

imageCount - Variable in class loci.formats.in.ZeissCZIReader.Coordinate

imageCount - Variable in class loci.tests.testng.OpenBytesPerformanceTest

imageCreationDate - Variable in class loci.formats.in.MetamorphReader

The TIFF's creation date

imageData - Variable in class jj2000.j2k.image.ImgDataJoiner

The list of input ImgData

imageDataOffset - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The stream position where the image data starts.

imageDataOffset - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

The stream position where the image data starts.

imageDataOffset - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

The stream position where the image data starts.

imageDepth - Variable in class loci.formats.in.FV1000Reader

imageDescription - Variable in class loci.formats.in.BaseZeissReader

imageDescription - Variable in class loci.formats.in.FEITiffReader

imageDescriptions - Variable in class loci.formats.in.SlidebookReader

imageDimensions - Variable in class com.sun.media.imageio.stream.RawImageInputStream

The image sizes.

imageDimensions - Variable in class loci.formats.services.JPEGTurboServiceImpl

imageFile - Variable in class loci.formats.in.PCORAWReader

imageFiles - Variable in class loci.formats.in.BaseZeissReader

imageFiles - Variable in class loci.formats.in.InCellReader

imageFiles - Variable in class loci.formats.in.IPWReader

List of embedded image file names (one per image plane).

imageFiles - Variable in class loci.formats.in.PCIReader

imageHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

imageHeight - Variable in class loci.formats.in.InCellReader

imageHeight - Variable in class loci.formats.services.JPEGTurboServiceImpl

imageIFD(int) - Method in class loci.formats.in.LeicaSCNReader

imageIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

The index of the image being written.

imageIndex - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The image index in this stream.

imageIndex - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

imageIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

ImageInputStreamWrapper - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is designed to wrap a ImageInputStream into a InputStream.

ImageInputStreamWrapper(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

Constructs an ImageInputStreamWrapper from the provided ImageInputStream.

ImageIOReader - Class in loci.formats.in

ImageIOReader is the superclass for file format readers that use the javax.imageio package.

ImageIOReader(String, String) - Constructor for class loci.formats.in.ImageIOReader

Constructs a new ImageIOReader.

ImageIOReader(String, String[]) - Constructor for class loci.formats.in.ImageIOReader

Constructs a new ImageIOReader.

ImageIOWriter - Class in loci.formats.out

ImageIOWriter is the superclass for file format writers that use the javax.imageio library.

ImageIOWriter(String, String, String) - Constructor for class loci.formats.out.ImageIOWriter

Constructs an ImageIO-based writer with the given name, default suffix and output type (e.g., png, jpeg).

ImageIOWriter(String, String[], String) - Constructor for class loci.formats.out.ImageIOWriter

Constructs an ImageIO-based writer with the given name, default suffixes and output type (e.g., png, jpeg).

imageIsContiguous(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Returns whether the image has contiguous data across rows.

IMAGEJ_MSG - Static variable in class loci.plugins.util.LibraryChecker

Message to be displayed if ImageJ is too old for Bio-Formats plugins.

IMAGEJ_TAG - Static variable in class loci.formats.in.TiffReader

IMAGEJ_VERSION - Static variable in class loci.plugins.util.LibraryChecker

Minimum version of ImageJ necessary for Bio-Formats plugins.

imageLeftPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

imageLinks - Variable in class ome.xml.model.Annotation

imageLinks - Variable in class ome.xml.model.Dataset

imageLinks - Variable in class ome.xml.model.MicrobeamManipulation

imageLinks - Variable in class ome.xml.model.ROI

imageLocations - Variable in class loci.formats.out.OMETiffWriter

imageMap - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

imageMetadata - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Image metadata, valid for the imageMetadataIndex only.

imageMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

imageMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

imageMetadataIndex - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

The image index for the cached metadata.

imageName - Variable in class loci.formats.in.BioRadSCNReader

imageName - Variable in class loci.formats.in.FEITiffReader

imageName - Variable in class loci.formats.in.ImaconReader

imageName - Variable in class loci.formats.in.MetamorphHandler

imageName - Variable in class loci.formats.in.MetamorphReader

The TIFF's name

imageName - Variable in class loci.formats.in.SISReader

imageName - Variable in class loci.formats.in.ZeissCZIReader

imageNames - Variable in class loci.formats.in.LIFReader

imageNames - Variable in class loci.formats.in.TillVisionReader

imageNames - Variable in class loci.formats.in.ZeissLSMReader

imageNumber - Variable in class loci.formats.in.APNGReader.PNGInputStream

imageNumEnd - Variable in class loci.formats.in.LeicaSCNReader.Image

imageNumStart - Variable in class loci.formats.in.LeicaSCNReader.Image

imageOffset - Variable in class loci.formats.in.IvisionReader

imageOffsets - Variable in class com.sun.media.imageio.stream.RawImageInputStream

The position of the first sample for each image.

ImagePlusReader - Class in loci.plugins.in

A high-level reader for ImagePlus objects.

ImagePlusReader() - Constructor for class loci.plugins.in.ImagePlusReader

Constructs an ImagePlusReader with the default options.

ImagePlusReader(ImportProcess) - Constructor for class loci.plugins.in.ImagePlusReader

Constructs an ImagePlusReader with the given complete import preparation process.

ImageProcessorReader - Class in loci.plugins.util

A low-level reader for ImageProcessor objects.

ImageProcessorReader() - Constructor for class loci.plugins.util.ImageProcessorReader

Constructs an ImageProcessorReader around a new image reader.

ImageProcessorReader(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorReader

Constructs an ImageProcessorReader with the given reader.

ImageProcessorSource - Class in loci.plugins.util

Retrieves ImageJ image processors from an image reader.

ImageProcessorSource(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorSource

imageProgress(ImageReader, float) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

imageProgress(ImageWriter, float) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter

ImageReader - Class in loci.formats

ImageReader is the master file format reader for all supported formats.

ImageReader() - Constructor for class loci.formats.ImageReader

Constructs a new ImageReader with the default list of reader classes from readers.txt.

ImageReader(ClassList<IFormatReader>) - Constructor for class loci.formats.ImageReader

Constructs a new ImageReader from the given list of reader classes.

imageReader - Variable in class loci.plugins.in.ImportProcess

imageReadParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

ImageRef - Class in ome.xml.model

ImageRef() - Constructor for class ome.xml.model.ImageRef

Default constructor.

ImageRef(Element, OMEModel) - Constructor for class ome.xml.model.ImageRef

Constructs ImageRef recursively from an XML DOM tree.

ImageRef(ImageRef) - Constructor for class ome.xml.model.ImageRef

Copy constructor.

imageROIs - Variable in class loci.formats.in.LIFReader

imageRX - Variable in class loci.formats.in.SDTInfo

imageRY - Variable in class loci.formats.in.SDTInfo

images - Variable in class loci.formats.gui.ImageViewer

images - Variable in class loci.formats.in.GIFReader

IMAGES - Static variable in class loci.formats.in.LeicaReader

images - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection

images - Variable in class ome.xml.model.Experiment

images - Variable in class ome.xml.model.Experimenter

images - Variable in class ome.xml.model.ExperimenterGroup

images - Variable in class ome.xml.model.Instrument

images - Variable in class ome.xml.model.OME

imageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

imageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

imagesPerFile - Variable in class loci.formats.FileStitcher.ExternalSeries

imagesPerFile - Variable in class loci.formats.in.DicomReader

imageStarted(ImageReader, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

imageStarted(ImageWriter, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter

imageStartPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

ImageTester - Class in loci.tests

A class for testing the AWTImageTools.makeImage(byte[], int, int, boolean) methods.

ImageTester(BufferedImage[][]) - Constructor for class loci.tests.ImageTester

imageThumbnail - Variable in class loci.formats.in.LeicaSCNReader.Image

ImageTools - Class in loci.formats

A utility class with convenience methods for manipulating images in primitive array form.

ImageTools() - Constructor for class loci.formats.ImageTools

imageTopPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

imageType - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

imageType - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

imageType - Variable in class loci.formats.in.DicomReader

imageTypeMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

ImageUtil - Class in com.sun.media.imageioimpl.common

ImageUtil() - Constructor for class com.sun.media.imageioimpl.common.ImageUtil

ImageViewer - Class in loci.formats.gui

ImageViewer is a simple viewer/converter for the Bio-Formats image formats.

ImageViewer() - Constructor for class loci.formats.gui.ImageViewer

Constructs an image viewer.

ImageViewer(boolean) - Constructor for class loci.formats.gui.ImageViewer

Constructs an image viewer.

imageWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

imageWidth - Variable in class loci.formats.in.InCellReader

imageWidth - Variable in class loci.formats.services.JPEGTurboServiceImpl

ImageWriter - Class in loci.formats

ImageWriter is the master file format writer for all supported formats.

ImageWriter() - Constructor for class loci.formats.ImageWriter

Constructs a new ImageWriter with the default list of writer classes from writers.txt.

ImageWriter(ClassList<IFormatWriter>) - Constructor for class loci.formats.ImageWriter

Constructs a new ImageWriter from the given list of writer classes.

imageX - Variable in class loci.formats.in.SDTInfo

4 subsequent fields valid only for Camera mode or FIFO_IMAGE mode.

imageY - Variable in class loci.formats.in.SDTInfo

ImagicReader - Class in loci.formats.in

ImagicReader is the file format reader for IMAGIC files.

ImagicReader() - Constructor for class loci.formats.in.ImagicReader

Constructs a new IMAGIC reader.

imagingEnvironment - Variable in class ome.xml.model.Image

ImagingEnvironment - Class in ome.xml.model

ImagingEnvironment() - Constructor for class ome.xml.model.ImagingEnvironment

Default constructor.

ImagingEnvironment(Element, OMEModel) - Constructor for class ome.xml.model.ImagingEnvironment

Constructs ImagingEnvironment recursively from an XML DOM tree.

ImagingEnvironment(ImagingEnvironment) - Constructor for class ome.xml.model.ImagingEnvironment

Copy constructor.

IMARIS_MAGIC_BYTES - Static variable in class loci.formats.in.ImarisReader

Magic number; present in all files.

ImarisHDFReader - Class in loci.formats.in

Reader for Bitplane Imaris 5.5 (HDF) files.

ImarisHDFReader() - Constructor for class loci.formats.in.ImarisHDFReader

Constructs a new Imaris HDF reader.

ImarisReader - Class in loci.formats.in

ImarisReader is the file format reader for Bitplane Imaris files.

ImarisReader() - Constructor for class loci.formats.in.ImarisReader

Constructs a new Imaris reader.

ImarisTiffReader - Class in loci.formats.in

ImarisTiffReader is the file format reader for Bitplane Imaris 3 files (TIFF variant).

ImarisTiffReader() - Constructor for class loci.formats.in.ImarisTiffReader

Constructs a new Imaris TIFF reader.

IMB_C - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

IMB_IPR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

IMB_UnkC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

IMB_VERS - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

Image Header Box Fields

IMetadata - Interface in loci.formats.meta

IMetadata - Interface in ome.xml.meta

A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.

IMetadataConfigurable - Interface in loci.formats

img - Variable in class loci.formats.in.ImageIOReader

Transient reference to a BufferedImage for this FormatHandler.currentId.

img - Variable in class loci.formats.tools.AsciiImage

img - Variable in class loci.poi.hssf.usermodel.DummyGraphics2d

img - Variable in class loci.poi.hssf.usermodel.EscherGraphics2d

img - Variable in class loci.tests.ImageTester

ImgData - Interface in jj2000.j2k.image

This interface defines methods to access image attributes (width, height, number of components, etc.).

ImgDataAdapter - Class in jj2000.j2k.image

This class provides a default implementation of the methods in the 'ImgData' interface.

ImgDataAdapter(ImgData) - Constructor for class jj2000.j2k.image.ImgDataAdapter

Instantiates the ImgDataAdapter object specifying the ImgData source.

ImgDataConverter - Class in jj2000.j2k.image

This class is responsible of all data type conversions.

ImgDataConverter(BlkImgDataSrc, int) - Constructor for class jj2000.j2k.image.ImgDataConverter

Constructs a new ImgDataConverter object that operates on the specified source of image data.

ImgDataConverter(BlkImgDataSrc) - Constructor for class jj2000.j2k.image.ImgDataConverter

Constructs a new ImgDataConverter object that operates on the specified source of image data.

ImgDataJoiner - Class in jj2000.j2k.image

This class implements the ImgData interface and allows to obtain data from different sources.

ImgDataJoiner(BlkImgDataSrc[], int[]) - Constructor for class jj2000.j2k.image.ImgDataJoiner

Class constructor.

imgdatasrc - Variable in class jj2000.j2k.image.ImgDataAdapter

The ImgData source

imgH - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The image width on the hi-res reference grid

ImgReader - Class in jj2000.j2k.image.input

This is the generic interface to be implemented by all image file (or other resource) readers for different image file formats.

ImgReader() - Constructor for class jj2000.j2k.image.input.ImgReader

ImgReaderPGM - Class in jj2000.j2k.image.input

This class implements the ImgData interface for reading 8 bit unsigned data from a binary PGM file.

ImgReaderPGM(File) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM

Creates a new PGM file reader from the specified file.

ImgReaderPGM(String) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM

Creates a new PGM file reader from the specified file name.

ImgReaderPGM(RandomAccessFile) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM

Creates a new PGM file reader from the specified RandomAccessFile object.

imgsrc - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

imgW - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The image width on the hi-res reference grid

IMinMaxStore - Interface in loci.formats.meta

Interface for consumers of minima and maxima pixel intensities across a given wavelength.

immersion - Variable in class loci.formats.in.ND2Handler

immersion - Variable in class loci.formats.in.NikonTiffReader

immersion - Variable in class loci.formats.in.SimplePCITiffReader

immersion - Variable in class loci.formats.in.ZeissLSMReader.Recording

IMMERSION - Static variable in class ome.specification.XMLMockObjects

The default objective's immersion.

Immersion - Enum in ome.xml.model.enums

Immersion(String) - Constructor for enum ome.xml.model.enums.Immersion

immersion - Variable in class ome.xml.model.Objective

ImmersionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Immersion.

ImmersionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ImmersionEnumHandler

immersions - Variable in class loci.formats.in.LIFReader

IMODReader - Class in loci.formats.in

Reader for IMOD binary files.

IMODReader() - Constructor for class loci.formats.in.IMODReader

Constructs a new IMOD reader.

IMODSTAMP_OFFSET - Static variable in class loci.formats.in.MRCReader

imp - Variable in class loci.plugins.out.Exporter

Current stack.

imp - Variable in class loci.plugins.Slicer

Current image stack.

IMPLICIT_VR - Static variable in class loci.formats.in.DicomReader

importData(JComponent, Transferable) - Method in class loci.plugins.shortcut.ShortcutTransferHandler

Importer - Class in loci.plugins.in

Core logic for the Bio-Formats Importer ImageJ plugin.

Importer(LociImporter) - Constructor for class loci.plugins.in.Importer

ImporterDialog - Class in loci.plugins.in

Abstract superclass of importer dialogs.

ImporterDialog(ImportProcess) - Constructor for class loci.plugins.in.ImporterDialog

ImporterMetadata - Class in loci.plugins.in

Helper class for storing original metadata key/value pairs.

ImporterMetadata(IFormatReader, ImportProcess, boolean) - Constructor for class loci.plugins.in.ImporterMetadata

ImporterOptions - Class in loci.plugins.in

Helper class for managing Bio-Formats Importer options.

ImporterOptions() - Constructor for class loci.plugins.in.ImporterOptions

ImporterPrompter - Class in loci.plugins.in

Helper class for presenting the user with dialog boxes for configuring importer options.

ImporterPrompter(ImportProcess) - Constructor for class loci.plugins.in.ImporterPrompter

ImportProcess - Class in loci.plugins.in

Manages the import preparation process.

ImportProcess() - Constructor for class loci.plugins.in.ImportProcess

ImportProcess(ImporterOptions) - Constructor for class loci.plugins.in.ImportProcess

ImportStep - Enum in loci.plugins.in

An enumeration of the steps in the import preparation process.

ImportStep(int, String) - Constructor for enum loci.plugins.in.ImportStep

IMPROVISION_MAGIC_STRING - Static variable in class loci.formats.in.ImprovisionTiffReader

ImprovisionTiffReader - Class in loci.formats.in

ImprovisionTiffReader is the file format reader for Improvision TIFF files.

ImprovisionTiffReader() - Constructor for class loci.formats.in.ImprovisionTiffReader

ImspectorReader - Class in loci.formats.in

ImspectorReader is the file format reader for Imspector .msr files.

ImspectorReader() - Constructor for class loci.formats.in.ImspectorReader

Constructs a new Imspector reader.

in - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

in - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The RandomAccessIO where to get data from

in - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader

The byte based source of data

in - Variable in class jj2000.j2k.entropy.decoder.ByteToBitInput

The byte based input

in - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The ByteInputBuffer used to read the compressed bit stream.

in - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

The random access from which the file format boxes are read

in - Variable in class jj2000.j2k.image.input.ImgReaderPGM

Where to read the data from

in - Variable in class loci.common.CBZip2InputStream

in - Variable in class loci.common.ZipHandle

in - Variable in class loci.formats.codec.JPEGTileDecoder

in - Variable in class loci.formats.FormatReader

Current file.

in - Variable in class loci.formats.gui.ImageViewer

in - Variable in class loci.formats.in.JPEG2000MetadataParser

Stream that we're parsing metadata from.

in - Variable in class loci.formats.in.ZeissTIFFReader.Plane

in - Variable in class loci.formats.out.TiffWriter

Input stream to use when overwriting data.

in - Variable in class loci.formats.services.JPEGTurboServiceImpl

in - Variable in class loci.formats.tiff.TiffParser

Input source from which to parse TIFF data.

in - Variable in class loci.formats.tools.AmiraParameters

in - Variable in class loci.poi.hssf.record.RecordInputStream

IN - Static variable in class ome.units.UNITS

inblk - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer

The 'DataBlkInt' object used to request data, used when output data is not int

inc - Variable in class jj2000.j2k.util.ISRandomAccessIO

inCache - Variable in class loci.formats.cache.Cache

Whether each position is currently supposed to be cached.

incCompImageSize(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

InCell3000Reader - Class in loci.formats.in

InCell3000Reader is the file format reader for InCell 3000.

InCell3000Reader() - Constructor for class loci.formats.in.InCell3000Reader

Constructs a new InCell 3000 reader.

INCELL_MAGIC_STRING - Static variable in class loci.formats.in.InCellReader

InCellReader - Class in loci.formats.in

InCellReader is the file format reader for InCell 1000/2000 datasets.

InCellReader() - Constructor for class loci.formats.in.InCellReader

Constructs a new InCell 1000/2000 reader.

InCellReader.Image - Class in loci.formats.in

InCellReader.Image() - Constructor for class loci.formats.in.InCellReader.Image

InCellReader.InCellHandler - Class in loci.formats.in

SAX handler for parsing XML.

InCellReader.InCellHandler(MetadataStore) - Constructor for class loci.formats.in.InCellReader.InCellHandler

InCellReader.MinimalInCellHandler - Class in loci.formats.in

InCellReader.MinimalInCellHandler() - Constructor for class loci.formats.in.InCellReader.MinimalInCellHandler

INCH - Static variable in class ome.units.UNITS

includeC - Variable in class loci.formats.gui.DataConverter

includeSheetNames - Variable in class loci.poi.hssf.extractor.ExcelExtractor

includeT - Variable in class loci.formats.gui.DataConverter

includeZ - Variable in class loci.formats.gui.DataConverter

incr - Variable in class loci.formats.in.SDTInfo

incrementShapeCount() - Method in class loci.poi.ddf.EscherDgRecord

incrementShapeId() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster

indent(int, String, String) - Static method in class loci.poi.poifs.dev.POIFSViewEngine

indentXML(String) - Static method in class loci.common.xml.XMLTools

Indents XML to be more readable.

indentXML(String, int) - Static method in class loci.common.xml.XMLTools

Indents XML by the given spacing to be more readable.

indentXML(String, boolean) - Static method in class loci.common.xml.XMLTools

Indents XML to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.

indentXML(String, int, boolean) - Static method in class loci.common.xml.XMLTools

Indents XML by the given spacing to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.

index - Variable in class loci.formats.cache.CacheEvent

Relevant index to the event, if any.

index - Variable in class loci.formats.codec.BitWriter

Deprecated.

Byte index into the buffer.

index - Variable in class loci.formats.in.BaseZeissReader.Tag

index - Variable in class loci.formats.in.CellVoyagerReader.AreaInfo

index - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo

index - Variable in class loci.formats.in.LeicaHandler.Laser

index - Variable in class loci.formats.in.LeicaReader.Detector

index - Variable in class loci.formats.in.PrairieMetadata.Frame

index of this <Frame>.

index - Variable in class loci.formats.in.ZeissTIFFHandler.Tag

index - Variable in class loci.plugins.in.ThumbLoader.SeriesInfo

index - Variable in class loci.plugins.util.SearchableWindow

index - Variable in class loci.poi.hssf.usermodel.HSSFCellStyle

index - Variable in class loci.poi.hssf.usermodel.HSSFFont

index - Static variable in class loci.poi.hssf.util.HSSFColor.AQUA

index - Static variable in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

index - Static variable in class loci.poi.hssf.util.HSSFColor.BLACK

index - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

index - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.BROWN

index - Static variable in class loci.poi.hssf.util.HSSFColor.CORAL

index - Static variable in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

index - Static variable in class loci.poi.hssf.util.HSSFColor.GOLD

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

index - Static variable in class loci.poi.hssf.util.HSSFColor.INDIGO

index - Static variable in class loci.poi.hssf.util.HSSFColor.LAVENDER

index - Static variable in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIME

index - Static variable in class loci.poi.hssf.util.HSSFColor.MAROON

index - Static variable in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.ORANGE

index - Static variable in class loci.poi.hssf.util.HSSFColor.ORCHID

index - Static variable in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.PINK

index - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM

index - Static variable in class loci.poi.hssf.util.HSSFColor.RED

index - Static variable in class loci.poi.hssf.util.HSSFColor.ROSE

index - Static variable in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.TAN

index - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL

index - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE

index - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET

index - Static variable in class loci.poi.hssf.util.HSSFColor.WHITE

index - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW

index - Variable in class ome.xml.model.WellSample

Index16ColorModel - Class in loci.formats.gui

ColorModel that handles 16 bits per channel lookup tables.

Index16ColorModel(int, int, short[][], boolean) - Constructor for class loci.formats.gui.Index16ColorModel

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.PINK

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW

index_ - Variable in class com.sun.media.imageioimpl.common.BitFile

INDEX_EXTERNAL - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

index_start - Variable in class mdbtools.libmdb.MdbTableDef

indexed - Variable in class loci.formats.CoreMetadata

Indicates whether or not the images are stored as indexed color.

INDEXED - Static variable in class loci.formats.in.APNGReader

indexedAsRGB - Variable in class loci.formats.FormatReader

Whether or not MetadataStore sets C = 3 for indexed color images.

indexedToRGB(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Converts an indexed color BufferedImage to an RGB BufferedImage.

indexedToRGB(byte[][], byte[]) - Static method in class loci.formats.ImageTools

Converts a LUT and an array of indices into an array of RGB tuples.

indexedToRGB(short[][], byte[], boolean) - Static method in class loci.formats.ImageTools

Converts a LUT and an array of indices into an array of RGB tuples.

indexIntoPlanes - Variable in class loci.formats.in.ZeissCZIReader

indexMax - Variable in class loci.formats.in.PrairieMetadata.Sequence

Maximum index value.

indexMin - Variable in class loci.formats.in.PrairieMetadata.Sequence

Minimum index value.

indexOf(int[], int) - Static method in class loci.common.DataTools

Returns the index of the first occurrence of the given value in the given array.

indexOf(Object[], Object) - Static method in class loci.common.DataTools

Returns the index of the first occurrence of the given value in the given Object array.

indexOf(double) - Method in class loci.poi.util.DoubleList

Returns the index in this list of the first occurrence of the specified element, or -1 if this list does not contain this element.

indexOf(int) - Method in class loci.poi.util.IntList

Returns the index in this list of the first occurrence of the specified element, or -1 if this list does not contain this element.

indexOf(short) - Method in class loci.poi.util.ShortList

Returns the index in this list of the first occurrence of the specified element, or -1 if this list does not contain this element.

IndexRecord - Class in loci.poi.hssf.record

Title: Index Record

IndexRecord() - Constructor for class loci.poi.hssf.record.IndexRecord

IndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.IndexRecord

Constructs an Index record and sets its fields appropriately.

indexTablePresentFlag - Variable in class ome.jxr.parser.DatastreamParser

indexToValue - Variable in class loci.formats.in.FakeReader

For indexed color, mapping from indices to values and vice versa.

inDimensionProperties - Variable in class loci.formats.in.CellSensReader

INDIVIDUAL_JARS - Static variable in class loci.formats.UpgradeChecker

Names of the individual JARs.

infblk - Variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

The 'CBlkWTDataFloat' object used to request data, used when quantizing floating-point data.

infFile - Variable in class loci.formats.in.FujiReader

infFiles - Variable in class loci.formats.in.TillVisionReader

inflatePictureData(byte[]) - Static method in class loci.poi.ddf.EscherMetafileBlip

Decompresses the provided data, returning the inflated result.

inflatePictureData(byte[]) - Static method in class loci.poi.ddf.EscherPictBlip

Decompresses the provided data, returning the inflated result.

inflater - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor

inflater - Variable in class loci.formats.in.OBFReader

INFO - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

info - Variable in class loci.formats.in.GatanReader

info - Variable in class loci.formats.in.OMETiffReader

Mapping from series and plane numbers to files and IFD entries.

info - Variable in class loci.formats.in.SDTInfo

info - Variable in class loci.formats.in.SDTReader

Object containing SDT header information.

info - Variable in class loci.plugins.prefs.Option

Documentation about the option, in HTML.

INFO - Static variable in class loci.poi.util.POILogger

INFO_DEFAULT - Static variable in class loci.plugins.in.MainDialog

Initial message to display in help text box.

INFO_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord

INFO_TABLE - Static variable in class loci.formats.in.LiFlimReader

infoLength - Variable in class loci.formats.in.SDTInfo

Length of the info part.

infoOffs - Variable in class loci.formats.in.SDTInfo

Offset of the info part which contains general text information (Title, date, time, contents etc.).

infoPane - Variable in class loci.plugins.in.MainDialog

infoSrc - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The source object

infoTable - Variable in class loci.plugins.in.MainDialog

ini - Variable in class loci.formats.in.LiFlimReader

Parsed configuration data.

ini - Variable in class loci.tests.testng.Configuration

INI_DEFAULT - Static variable in class loci.plugins.prefs.Option

INI key indicating option's default value.

INI_INFO - Static variable in class loci.plugins.prefs.Option

INI key indicating option's info.

INI_KEY - Static variable in class loci.plugins.prefs.Option

INI key indicating option's key.

INI_LABEL - Static variable in class loci.plugins.prefs.Option

INI key indicating option's label.

INI_POSSIBLE - Static variable in class loci.plugins.prefs.StringOption

INI key indicating option's possible values.

INI_SAVE - Static variable in class loci.plugins.prefs.Option

INI key indicating whether option should be saved to prefs file.

INI_TYPE - Static variable in class loci.plugins.prefs.OptionsList

INI key indicating option's type.

iniFile - Variable in class loci.formats.in.FakeReader

Properties companion file which can be associated with this fake file

IniList - Class in loci.common

A data structure containing a parsed list of INI key/value tables.

IniList() - Constructor for class loci.common.IniList

IniParser - Class in loci.common

A simple parser for INI configuration files.

IniParser() - Constructor for class loci.common.IniParser

init(int, int) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Initializes the variables of this class, given the dimensions at the base level (leaf level).

init() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Initializes the state of the MQ coder, without modifying the current context states.

init() - Method in class loci.common.CBZip2InputStream

init() - Method in class loci.formats.services.NetCDFServiceImpl

init(byte[], int, int) - Method in class loci.poi.hpsf.PropertySet

Initializes this PropertySet instance from a byte array.

init() - Method in class loci.poi.hssf.model.FormulaParser

Initialize

init(String) - Method in class loci.poi.hssf.util.RangeAddress

init(String) - Method in class loci.tests.testng.FileHandleTest

init(String, String) - Method in class loci.tests.testng.OpenBytesPerformanceTest

init(String) - Method in class loci.tests.testng.SubResolutionTest

init() - Method in class org.libjpegturbo.turbojpeg.TJCompressor

init() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

init() - Method in class org.libjpegturbo.turbojpeg.TJTransformer

INIT_EL_COPYING - Static variable in class jj2000.j2k.util.ArrayUtil

The number of elements to copy initially in an optimized array copy

INIT_LBLOCK - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Initial value of the state variable associated with code-block length.

INIT_LBLOCK - Static variable in class jj2000.j2k.codestream.writer.PktEncoder

The initial value for the lblock

IniTable - Class in loci.common

A data structure containing a parsed list of INI key/value tables.

IniTable() - Constructor for class loci.common.IniTable

initAlternateMetadata() - Method in class loci.formats.in.FluoviewReader

initAlternateMetadataStore() - Method in class loci.formats.in.FluoviewReader

initBitBuf() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Initialize bit buffer machinery.

initBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

initBlock() - Method in class loci.common.CBZip2InputStream

initChilds() - Method in class jj2000.j2k.wavelet.Subband

Initializes the childs of this node with the correct values.

initClass() - Method in class loci.formats.gui.LegacyQTTools

Initializes the class.

initCoreMetadata(int, int) - Method in class loci.formats.in.LeicaSCNReader

initCoreMetadata() - Method in class loci.formats.in.LiFlimReader

initData(Node, int[], int[], Object[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

initDecompressor() - Method in class loci.formats.in.AmiraReader.HxZip

initExtraMetadata() - Method in class loci.formats.in.DeltavisionReader

initFile(String) - Method in class loci.formats.FileStitcher

Initializes the given file or file pattern.

initFile(String) - Method in class loci.formats.FormatReader

Initializes the given file (parsing header information, etc.).

initFile(String) - Method in class loci.formats.in.AFIReader

initFile(String) - Method in class loci.formats.in.AIMReader

initFile(String) - Method in class loci.formats.in.AliconaReader

initFile(String) - Method in class loci.formats.in.AmiraReader

initFile(String) - Method in class loci.formats.in.AnalyzeReader

initFile(String) - Method in class loci.formats.in.APLReader

initFile(String) - Method in class loci.formats.in.APNGReader

initFile(String) - Method in class loci.formats.in.ARFReader

initFile(String) - Method in class loci.formats.in.AVIReader

initFile(String) - Method in class loci.formats.in.BaseTiffReader

initFile(String) - Method in class loci.formats.in.BDReader

initFile(String) - Method in class loci.formats.in.BioRadGelReader

initFile(String) - Method in class loci.formats.in.BioRadReader

initFile(String) - Method in class loci.formats.in.BioRadSCNReader

initFile(String) - Method in class loci.formats.in.BMPReader

initFile(String) - Method in class loci.formats.in.BrukerReader

initFile(String) - Method in class loci.formats.in.BurleighReader

initFile(String) - Method in class loci.formats.in.CanonRawReader

initFile(String) - Method in class loci.formats.in.CellH5Reader

initFile(String) - Method in class loci.formats.in.CellomicsReader

initFile(String) - Method in class loci.formats.in.CellSensReader

initFile(String) - Method in class loci.formats.in.CellVoyagerReader

initFile(String) - Method in class loci.formats.in.CellWorxReader

initFile(String) - Method in class loci.formats.in.DeltavisionReader

initFile(String) - Method in class loci.formats.in.DicomReader

initFile(String) - Method in class loci.formats.in.DNGReader

initFile(String) - Method in class loci.formats.in.Ecat7Reader

initFile(String) - Method in class loci.formats.in.EPSReader

initFile(String) - Method in class loci.formats.in.FakeReader

initFile(String) - Method in class loci.formats.in.FEIReader

initFile(String) - Method in class loci.formats.in.FilePatternReader

initFile(String) - Method in class loci.formats.in.FitsReader

initFile(String) - Method in class loci.formats.in.FlexReader

initFile(String) - Method in class loci.formats.in.FlowSightReader

initFile(String) - Method in class loci.formats.in.FujiReader

initFile(String) - Method in class loci.formats.in.FV1000Reader

initFile(String) - Method in class loci.formats.in.GatanDM2Reader

initFile(String) - Method in class loci.formats.in.GatanReader

initFile(String) - Method in class loci.formats.in.GIFReader

initFile(String) - Method in class loci.formats.in.HamamatsuVMSReader

initFile(String) - Method in class loci.formats.in.HISReader

initFile(String) - Method in class loci.formats.in.HitachiReader

initFile(String) - Method in class loci.formats.in.HRDGDFReader

initFile(String) - Method in class loci.formats.in.I2IReader

initFile(String) - Method in class loci.formats.in.ICSReader

initFile(String) - Method in class loci.formats.in.IM3Reader

initFile(String) - Method in class loci.formats.in.ImageIOReader

initFile(String) - Method in class loci.formats.in.ImagicReader

initFile(String) - Method in class loci.formats.in.ImarisHDFReader

initFile(String) - Method in class loci.formats.in.ImarisReader

initFile(String) - Method in class loci.formats.in.ImarisTiffReader

initFile(String) - Method in class loci.formats.in.IMODReader

initFile(String) - Method in class loci.formats.in.ImspectorReader

initFile(String) - Method in class loci.formats.in.InCell3000Reader

initFile(String) - Method in class loci.formats.in.InCellReader

initFile(String) - Method in class loci.formats.in.INRReader

initFile(String) - Method in class loci.formats.in.InveonReader

initFile(String) - Method in class loci.formats.in.IPLabReader

initFile(String) - Method in class loci.formats.in.IPWReader

initFile(String) - Method in class loci.formats.in.IvisionReader

initFile(String) - Method in class loci.formats.in.JEOLReader

initFile(String) - Method in class loci.formats.in.JPEG2000Reader

initFile(String) - Method in class loci.formats.in.JPEGReader.DefaultJPEGReader

initFile(String) - Method in class loci.formats.in.JPXReader

initFile(String) - Method in class loci.formats.in.KhorosReader

initFile(String) - Method in class loci.formats.in.KodakReader

initFile(String) - Method in class loci.formats.in.L2DReader

initFile(String) - Method in class loci.formats.in.LegacyND2Reader

initFile(String) - Method in class loci.formats.in.LegacyQTReader

initFile(String) - Method in class loci.formats.in.LeicaReader

initFile(String) - Method in class loci.formats.in.LiFlimReader

initFile(String) - Method in class loci.formats.in.LIFReader

initFile(String) - Method in class loci.formats.in.LIMReader

initFile(String) - Method in class loci.formats.in.MetamorphReader

initFile(String) - Method in class loci.formats.in.MetamorphTiffReader

initFile(String) - Method in class loci.formats.in.MIASReader

initFile(String) - Method in class loci.formats.in.MicromanagerReader

initFile(String) - Method in class loci.formats.in.MINCReader

initFile(String) - Method in class loci.formats.in.MinimalTiffReader

initFile(String) - Method in class loci.formats.in.MNGReader

initFile(String) - Method in class loci.formats.in.MolecularImagingReader

initFile(String) - Method in class loci.formats.in.MRCReader

initFile(String) - Method in class loci.formats.in.MRWReader

initFile(String) - Method in class loci.formats.in.NAFReader

initFile(String) - Method in class loci.formats.in.NativeND2Reader

initFile(String) - Method in class loci.formats.in.NativeQTReader

initFile(String) - Method in class loci.formats.in.NDPIReader

initFile(String) - Method in class loci.formats.in.NDPISReader

initFile(String) - Method in class loci.formats.in.NiftiReader

initFile(String) - Method in class loci.formats.in.NikonReader

initFile(String) - Method in class loci.formats.in.NRRDReader

initFile(String) - Method in class loci.formats.in.OBFReader

initFile(String) - Method in class loci.formats.in.OMETiffReader

initFile(String) - Method in class loci.formats.in.OMEXMLReader

initFile(String) - Method in class loci.formats.in.OpenlabRawReader

initFile(String) - Method in class loci.formats.in.OpenlabReader

initFile(String) - Method in class loci.formats.in.OperettaReader

initFile(String) - Method in class loci.formats.in.OxfordInstrumentsReader

initFile(String) - Method in class loci.formats.in.PCIReader

initFile(String) - Method in class loci.formats.in.PCORAWReader

initFile(String) - Method in class loci.formats.in.PCXReader

initFile(String) - Method in class loci.formats.in.PDSReader

initFile(String) - Method in class loci.formats.in.PerkinElmerReader

initFile(String) - Method in class loci.formats.in.PGMReader

initFile(String) - Method in class loci.formats.in.PhotoshopTiffReader

initFile(String) - Method in class loci.formats.in.PictReader

initFile(String) - Method in class loci.formats.in.PovrayReader

initFile(String) - Method in class loci.formats.in.PQBinReader

initFile(String) - Method in class loci.formats.in.PrairieReader

initFile(String) - Method in class loci.formats.in.PSDReader

initFile(String) - Method in class loci.formats.in.QuesantReader

initFile(String) - Method in class loci.formats.in.RHKReader

initFile(String) - Method in class loci.formats.in.SBIGReader

initFile(String) - Method in class loci.formats.in.ScanrReader

initFile(String) - Method in class loci.formats.in.ScreenReader

initFile(String) - Method in class loci.formats.in.SDTReader

initFile(String) - Method in class loci.formats.in.SeikoReader

initFile(String) - Method in class loci.formats.in.SIFReader

initFile(String) - Method in class loci.formats.in.SlideBook6Reader

initFile(String) - Method in class loci.formats.in.SlidebookReader

initFile(String) - Method in class loci.formats.in.SMCameraReader

initFile(String) - Method in class loci.formats.in.SpiderReader

initFile(String) - Method in class loci.formats.in.TargaReader

initFile(String) - Method in class loci.formats.in.TCSReader

initFile(String) - Method in class loci.formats.in.TextReader

initFile(String) - Method in class loci.formats.in.TiffJAIReader

initFile(String) - Method in class loci.formats.in.TileJPEGReader

initFile(String) - Method in class loci.formats.in.TillVisionReader

initFile(String) - Method in class loci.formats.in.TopometrixReader

initFile(String) - Method in class loci.formats.in.TrestleReader

initFile(String) - Method in class loci.formats.in.UBMReader

initFile(String) - Method in class loci.formats.in.UnisokuReader

initFile(String) - Method in class loci.formats.in.VarianFDFReader

initFile(String) - Method in class loci.formats.in.VeecoReader

initFile(String) - Method in class loci.formats.in.VGSAMReader

initFile(String) - Method in class loci.formats.in.VisitechReader

initFile(String) - Method in class loci.formats.in.VolocityClippingReader

initFile(String) - Method in class loci.formats.in.VolocityReader

initFile(String) - Method in class loci.formats.in.WATOPReader

initFile(String) - Method in class loci.formats.in.WlzReader

initFile(String) - Method in class loci.formats.in.ZeissCZIReader

initFile(String) - Method in class loci.formats.in.ZeissLMSReader

initFile(String) - Method in class loci.formats.in.ZeissLSMReader

initFile(String) - Method in class loci.formats.in.ZeissTIFFReader

initFile(String) - Method in class loci.formats.in.ZeissZVIReader

initFile(String) - Method in class loci.formats.in.ZipReader

initFile() - Method in class loci.tests.testng.FormatReaderTest

Initializes the reader and configuration tree.

initFile(boolean) - Method in class loci.tests.testng.FormatReaderTest

initFileMain(String) - Method in class loci.formats.in.BaseZeissReader

initFlexFile(String) - Method in class loci.formats.in.FlexReader

initForwICT() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Initialize some variables used with ICT.

initForwRCT() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Initialize some variables used with RCT.

INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFRow

INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

Used for compile-time optimization.

INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

used for compile-time performance/memory optimization.

INITIAL_LENGTH - Static variable in class loci.common.ByteArrayHandle

Initial length of a new file.

initialiseCRC() - Method in class loci.common.CRC

initialize(ColorModel, SampleModel, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

initialize(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

initialize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

initialize(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

initialize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

initialize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Initializes the layers array.

initialize() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Initializes the rate allocation points, taking into account header overhead and such.

initialize() - Method in class loci.formats.codec.JPEG2000Codec

Initializes the JAI ImageIO dependency service.

initialize(String, int) - Method in class loci.formats.codec.JPEGTileDecoder

initialize(RandomAccessInputStream, int) - Method in class loci.formats.codec.JPEGTileDecoder

initialize(RandomAccessInputStream, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder

initialize() - Method in class loci.formats.codec.LuraWaveCodec

Initializes the LuraWave dependency service.

initialize(String) - Method in interface loci.formats.services.EXIFService

initialize(String) - Method in class loci.formats.services.EXIFServiceImpl

initialize(RandomAccessInputStream, int, int) - Method in interface loci.formats.services.JPEGTurboService

initialize(RandomAccessInputStream, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl

initialize(InputStream) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.lwfDecoder(InputStream, String, String).

initialize(InputStream) - Method in class loci.formats.services.LuraWaveServiceImpl

initialize(String) - Method in interface loci.formats.services.MDBService

Prepare the given .mdb file for reading.

initialize(String) - Method in class loci.formats.services.MDBServiceImpl

initialize(String) - Method in interface loci.formats.services.MetakitService

initialize(RandomAccessInputStream) - Method in interface loci.formats.services.MetakitService

initialize(String) - Method in class loci.formats.services.MetakitServiceImpl

initialize(RandomAccessInputStream) - Method in class loci.formats.services.MetakitServiceImpl

initialize(String) - Method in interface loci.formats.services.POIService

Construct a new POI filesystem around the given file.

initialize(RandomAccessInputStream) - Method in interface loci.formats.services.POIService

Construct a new POI filesystem around the given stream.

initialize(String) - Method in class loci.formats.services.POIServiceImpl

initialize(RandomAccessInputStream) - Method in class loci.formats.services.POIServiceImpl

initialize(String) - Method in class loci.poi.util.CommonsLogger

initialize(String) - Method in class loci.poi.util.NullLogger

initialize(String) - Method in class loci.poi.util.POILogger

initialize(String) - Method in class loci.poi.util.SystemOutLogger

initialize() - Method in class ome.metakit.MetakitReader

Read the tables for the current database file.

initializeColors() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.COLORS notification.

initializeCrop() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.CROP notification.

initialized - Variable in class loci.formats.FormatWriter

Whether each plane in each series of the current file has been prepped for writing.

initialized - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating this class has been initialized.

initializeDimOrder() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.DIM_ORDER notification.

initializedPlane - Variable in class loci.formats.in.HamamatsuVMSReader

initializedPlane - Variable in class loci.formats.in.NDPIReader

initializedSeries - Variable in class loci.formats.in.HamamatsuVMSReader

initializedSeries - Variable in class loci.formats.in.NDPIReader

initializeFile() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.FILE notification.

initializeFromMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

Initializes these instance variables from the image metadata:

initializeFromStream(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

initializeHelper - Variable in class loci.formats.in.NRRDReader

initializeJHDFService(String) - Method in class loci.formats.in.CellH5Reader

initializeMetadata() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.METADATA notification.

initializeRange() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.RANGE notification.

initializeRead(int, J2KImageReadParamJava, J2KMetadata) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

initializeReader() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.READER notification.

initializeScaleTables(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

initializeSeries() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.SERIES notification.

initializeStack() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.STACK notification.

initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Initialize the string table.

initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Initialize the string table.

initializeWriter(String, String, boolean) - Method in class loci.tests.testng.Jpeg2000GrindTest

Initializes the writer.

initializeWriter(String, String, boolean) - Method in class loci.tests.testng.TiffWriterTest

Initializes the writer.

initImage() - Method in class loci.formats.in.ImageIOReader

initIntArray(String, long[], long) - Method in interface loci.formats.services.JHDFService

Creates an HDF5 dataset in path consisting of integers specified by bytes per pixel bpp.

initIntArray(String, long[], long) - Method in class loci.formats.services.JHDFServiceImpl

initJPEGWriter(boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Initializes the JPEGWriter and JPEGParam instance variables.

initLicense() - Method in class loci.formats.services.LuraWaveServiceImpl

initLicenseCode() - Static method in class loci.plugins.util.LuraWave

Reads LuraWave license code from ImageJ preferences, if available.

initMeaFile(String) - Method in class loci.formats.in.FlexReader

Initialize the dataset from a .mea file.

initMetadata() - Method in class loci.formats.in.BaseTiffReader

Populates the metadata hashtable and metadata store.

initMetadata() - Method in class loci.formats.in.GelReader

initMetadata(String) - Method in class loci.formats.in.LIFReader

Parses a string of XML and puts the values in a Hashtable.

initMetadata(int) - Method in class loci.formats.in.ZeissLSMReader

initMetadataStore() - Method in class loci.formats.in.BaseTiffReader

Populates the metadata store using the data parsed in BaseTiffReader.initStandardMetadata() along with some further parsing done in the method itself.

initMetadataStore() - Method in class loci.formats.in.FEITiffReader

initMetadataStore() - Method in class loci.formats.in.FluoviewReader

initMetadataStore() - Method in class loci.formats.in.ImaconReader

initMetadataStore() - Method in class loci.formats.in.ImprovisionTiffReader

initMetadataStore() - Method in class loci.formats.in.JPKReader

initMetadataStore() - Method in class loci.formats.in.LeicaSCNReader

initMetadataStore() - Method in class loci.formats.in.LEOReader

initMetadataStore() - Method in class loci.formats.in.NDPIReader

initMetadataStore() - Method in class loci.formats.in.NikonElementsTiffReader

initMetadataStore() - Method in class loci.formats.in.NikonTiffReader

initMetadataStore() - Method in class loci.formats.in.PyramidTiffReader

initMetadataStore() - Method in class loci.formats.in.SimplePCITiffReader

initMetadataStore() - Method in class loci.formats.in.SISReader

initMetadataStore() - Method in class loci.formats.in.SlidebookTiffReader

initMetadataStore() - Method in class loci.formats.in.SVSReader

initMetadataStore() - Method in class loci.formats.in.TiffReader

initMetadataStore() - Method in class loci.formats.in.TrestleReader

initMinMax() - Method in class loci.formats.MinMaxCalculator

Ensures internal min/max variables are initialized properly.

initOMEMetadata() - Method in class loci.formats.in.LiFlimReader

initOriginalMetadata() - Method in class loci.formats.in.LiFlimReader

initPixels() - Method in class loci.formats.in.DeltavisionReader

initPlaneReader() - Method in class loci.formats.in.AmiraReader

initPOIService() - Method in class loci.formats.in.FV1000Reader

initPOIService() - Method in class loci.formats.in.IPWReader

initPOIService() - Method in class loci.formats.in.PCIReader

initPOIService() - Method in class loci.formats.in.ZeissZVIReader

initProgressWatch(int, int, String) - Method in interface jj2000.j2k.util.ProgressWatch

Initialize the progress watching process

initProps() - Static method in class loci.poi.ddf.EscherProperties

initReader(int, int) - Method in class loci.formats.FileStitcher

initResFile(String) - Method in class loci.formats.in.FlexReader

Initialize the dataset from a .res file.

initSOP_EPHArrays() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Performs the initialisation of the arrays that are used to store the values used to write SOP and EPH markers

initStack(long, int) - Method in class loci.formats.in.OBFReader

initStandardMetadata() - Method in class loci.formats.in.BaseTiffReader

Parses standard metadata.

initStandardMetadata() - Method in class loci.formats.in.DNGReader

initStandardMetadata() - Method in class loci.formats.in.FEITiffReader

initStandardMetadata() - Method in class loci.formats.in.FluoviewReader

initStandardMetadata() - Method in class loci.formats.in.ImaconReader

initStandardMetadata() - Method in class loci.formats.in.ImprovisionTiffReader

initStandardMetadata() - Method in class loci.formats.in.JPKReader

initStandardMetadata() - Method in class loci.formats.in.LeicaSCNReader

initStandardMetadata() - Method in class loci.formats.in.LEOReader

initStandardMetadata() - Method in class loci.formats.in.MetamorphReader

initStandardMetadata() - Method in class loci.formats.in.NDPIReader

initStandardMetadata() - Method in class loci.formats.in.NikonElementsTiffReader

initStandardMetadata() - Method in class loci.formats.in.NikonReader

initStandardMetadata() - Method in class loci.formats.in.NikonTiffReader

initStandardMetadata() - Method in class loci.formats.in.PyramidTiffReader

initStandardMetadata() - Method in class loci.formats.in.SEQReader

initStandardMetadata() - Method in class loci.formats.in.SimplePCITiffReader

initStandardMetadata() - Method in class loci.formats.in.SISReader

initStandardMetadata() - Method in class loci.formats.in.SlidebookTiffReader

initStandardMetadata() - Method in class loci.formats.in.SVSReader

initStandardMetadata() - Method in class loci.formats.in.TiffReader

initStandardMetadata() - Method in class loci.formats.in.TrestleReader

initStates - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The initial state of each context

initStates - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The initial state of each context

initSubbandsFields(int, SubbandSyn) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Initialises subbands fields, such as code-blocks dimension and number of magnitude bits, in the subband tree.

initSubbandsFields(int, int, Subband) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Initialises subbands fields, such as number of code-blocks and code-blocks dimension, in the subband tree.

initTags() - Static method in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

initTags() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

initTags() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

initTags() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

initTags() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

initTags() - Static method in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

initTags() - Static method in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

initTiffParser() - Method in class loci.formats.in.MinimalTiffReader

Reinitialize the underlying TiffParser.

initTile(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Read all tile-part headers of the requested tile.

initTileComp(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Load options, length calculation type and termination type for each tile-component.

initTime - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The wall time for the initialization.

initTLM() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

initTT(int) - Method in class loci.common.CBZip2InputStream.Data

Initializes the CBZip2InputStream.Data.tt array.

initVars(String) - Method in class loci.formats.in.BaseZeissReader

initVars(String) - Method in class loci.formats.in.ZeissTIFFReader

initVars(String) - Method in class loci.formats.in.ZeissZVIReader

IniWriter - Class in loci.common

A simple writer for INI configuration files.

IniWriter() - Constructor for class loci.common.IniWriter

INK_NAMES - Static variable in class loci.formats.tiff.IFD

INK_SET - Static variable in class loci.formats.tiff.IFD

INK_SET_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "InkSet" tag.

INK_SET_NOT_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "InkSet" tag.

inMemory - Variable in class loci.tests.testng.FormatReaderTest

INNER - Static variable in class mdbtools.dbengine.sql.Join

input - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The source raster if write raster.

input - Variable in class loci.formats.gui.DataConverter

input - Variable in class loci.formats.Memoizer.KryoDeser

inputIsRaster - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Indicates a raster rather than a RenderedImage to be encoded.

inputOrder - Variable in class loci.formats.SwappableMetadata

Order in which dimensions are stored.

inputOrder - Variable in class loci.plugins.in.ImporterOptions

inputRaster - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

inputRaster - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The input source raster.

InputStreamAdapter - Class in com.sun.media.imageioimpl.plugins.clib

InputStreamAdapter(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

INR_MAGIC - Static variable in class loci.formats.in.INRReader

inReplacePixelsNest - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

INRReader - Class in loci.formats.in

INRReader is the file format reader for INR files.

INRReader() - Constructor for class loci.formats.in.INRReader

Constructs a new INR reader.

inSequence - Variable in class loci.formats.in.DicomReader

insert(int, IIOImage, ImageWriteParam, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

insert(ImageProcessor, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

insertBefore(Node, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

insertCell(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

insertChartRecord() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Test only.

insertChartRecords(List) - Method in class loci.poi.hssf.usermodel.HSSFSheet

insertColumn(ColumnInfoRecord) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Inserts a column into the aggregate (at the end of the list).

insertColumn(int, ColumnInfoRecord) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Inserts a column into the aggregate (at the position specified by idx.

insertNode(PaletteBuilder.ColorNode, Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

insertNodeIntoTree(IIOMetadataNode, IIOMetadataNode) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

insertRow(RowRecord) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

insertSST() - Method in class loci.poi.hssf.model.Workbook

use this function to add a Shared String Table to an existing sheet (say generated by a different java api) without an sst....

insertUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets

insertValue(BinaryTree.Node) - Method in class loci.poi.util.BinaryTree

insert a node by its value

inspectViewable(Object, boolean, int, String) - Static method in class loci.poi.poifs.dev.POIFSViewEngine

Inspect an object that may be viewable, and drill down if told to

install(String, String) - Method in class loci.formats.UpgradeChecker

Download and install a JAR file from the given URL.

install(String) - Static method in class loci.plugins.Updater

Install the tools bundle which can be retrieved from the specified path.

installIndividualJars(String, String) - Method in class loci.formats.UpgradeChecker

Download and install all of the individual JAR files into the given directory.

InstallWizard - Class in loci.plugins.config

A wizard for walking users through installation of third party libraries and plugins used by the Bio-Formats plugins.

InstallWizard() - Constructor for class loci.plugins.config.InstallWizard

instance - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat

instance - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat

instance - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat

instance - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

instance - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

instance - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat

instance - Static variable in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

instances - Static variable in class loci.poi.util.BitFieldFactory

institution - Variable in class ome.xml.model.Experimenter

instrument - Variable in class ome.specification.XMLMockObjects

The instrument used for the metadata.

instrument - Variable in class ome.xml.model.Detector

instrument - Variable in class ome.xml.model.Dichroic

instrument - Variable in class ome.xml.model.Filter

instrument - Variable in class ome.xml.model.FilterSet

instrument - Variable in class ome.xml.model.Image

Instrument - Class in ome.xml.model

Instrument() - Constructor for class ome.xml.model.Instrument

Default constructor.

Instrument(Element, OMEModel) - Constructor for class ome.xml.model.Instrument

Constructs Instrument recursively from an XML DOM tree.

Instrument(Instrument) - Constructor for class ome.xml.model.Instrument

Copy constructor.

instrument - Variable in class ome.xml.model.LightSource

instrument - Variable in class ome.xml.model.Objective

instrumentLinks - Variable in class ome.xml.model.Annotation

instrumentModel - Variable in class loci.formats.in.NDPIReader

InstrumentRef - Class in ome.xml.model

InstrumentRef() - Constructor for class ome.xml.model.InstrumentRef

Default constructor.

InstrumentRef(Element, OMEModel) - Constructor for class ome.xml.model.InstrumentRef

Constructs InstrumentRef recursively from an XML DOM tree.

InstrumentRef(InstrumentRef) - Constructor for class ome.xml.model.InstrumentRef

Copy constructor.

instruments - Variable in class ome.xml.model.OME

INT - Static variable in class loci.formats.in.CellSensReader

INT - Static variable in class loci.formats.in.GatanReader

INT16 - Static variable in class loci.formats.FormatTools

Identifies the INT16 data type used to store pixel values.

INT32 - Static variable in class loci.formats.FormatTools

Identifies the INT32 data type used to store pixel values.

INT8 - Static variable in class loci.formats.FormatTools

Identifies the INT8 data type used to store pixel values.

INT_2 - Static variable in class loci.formats.in.CellSensReader

INT_3 - Static variable in class loci.formats.in.CellSensReader

INT_4 - Static variable in class loci.formats.in.CellSensReader

INT_ARRAY_2 - Static variable in class loci.formats.in.CellSensReader

INT_ARRAY_3 - Static variable in class loci.formats.in.CellSensReader

INT_ARRAY_4 - Static variable in class loci.formats.in.CellSensReader

INT_ARRAY_5 - Static variable in class loci.formats.in.CellSensReader

INT_INTERVAL - Static variable in class loci.formats.in.CellSensReader

INT_RECT - Static variable in class loci.formats.in.CellSensReader

INT_SIGN_BIT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The sign bit for int data

INT_SIGN_BIT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The sign bit for int data

INT_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

intArraySet(int[], int) - Static method in class jj2000.j2k.util.ArrayUtil

Reinitializes an int array to the given value in an optimized way.

intBlk - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Temporary DataBlkInt object (needed when encoder uses floating-point filters).

intBlk - Variable in class jj2000.j2k.image.input.ImgReaderPGM

Temporary DataBlkInt object (needed when encoder uses floating-point filters).

intData - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

Boolean to know if one are currently dealing with int or float data.

IntegerField - Class in loci.poi.util

representation of an integer (32-bit) field at a fixed location within a byte array

IntegerField(int) - Constructor for class loci.poi.util.IntegerField

construct the IntegerField with its offset into its containing byte array

IntegerField(int, int) - Constructor for class loci.poi.util.IntegerField

construct the IntegerField with its offset into its containing byte array and initialize its value

IntegerField(int, byte[]) - Constructor for class loci.poi.util.IntegerField

Construct the IntegerField with its offset into its containing byte array and initialize its value from its byte array

IntegerField(int, int, byte[]) - Constructor for class loci.poi.util.IntegerField

construct the IntegerField with its offset into its containing byte array, initialize its value, and write the value to a byte array

IntegerSpec - Class in jj2000.j2k

This class extends ModuleSpec and is responsible of Integer specifications for each tile-component.

IntegerSpec(int, int, byte) - Constructor for class jj2000.j2k.IntegerSpec

Constructs a new 'IntegerSpec' for the specified number of tiles and components and with allowed type of specifications.

IntegerSpec(int, int, byte, J2KImageWriteParamJava, String, String) - Constructor for class jj2000.j2k.IntegerSpec

Constructs a new 'IntegerSpec' for the specified number of tiles and components, the allowed specifications type instance.

integration - Variable in class ome.xml.model.DetectorSettings

INTELLECTUAL_PROPERTY_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

intelProp - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

intelProp - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

intenScaling - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Intensity scaling factor.

intensity - Variable in class loci.formats.in.LeicaHandler.Laser

intensity - Variable in class loci.formats.in.SDTReader

Whether to combine lifetime bins into single intensity image planes.

intent - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

intercept(List<IMethodInstance>, ITestContext) - Method in class loci.tests.testng.OrderingListener

InterfaceEndRecord - Class in loci.poi.hssf.record

Title: Interface End Record

InterfaceEndRecord() - Constructor for class loci.poi.hssf.record.InterfaceEndRecord

InterfaceEndRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.InterfaceEndRecord

Constructs an InterfaceEnd record and sets its fields appropriately.

InterfaceHdrRecord - Class in loci.poi.hssf.record

Title: Interface Header Record

InterfaceHdrRecord() - Constructor for class loci.poi.hssf.record.InterfaceHdrRecord

InterfaceHdrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.InterfaceHdrRecord

Constructs an Codepage record and sets its fields appropriately.

interlace - Variable in class loci.formats.in.APNGReader

interlace - Variable in class loci.formats.in.GIFReader

Interlace flag.

interlaced - Variable in class loci.formats.codec.MJPBCodecOptions

Indicates whether or not channels are interlaced.

interlaced - Variable in class loci.formats.in.NativeQTReader

Set to true if the scanlines in a plane are interlaced (mjpb only).

interlaceFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

interleaved - Variable in class loci.formats.codec.CodecOptions

Indicates whether or not channels are interleaved.

interleaved - Variable in class loci.formats.CoreMetadata

True if channels are stored RGBRGBRGB...; false if channels are stored RRR...GGG...BBB...

interleaved - Variable in class loci.formats.FormatWriter

Whether the channels in an RGB image are interleaved.

interleaved - Variable in class ome.xml.model.Pixels

intern_isSheetNameOk(String, boolean) - Static method in class loci.poi.hssf.util.RangeAddress

internalClrFmt - Variable in class ome.jxr.parser.DatastreamParser

InternalColorFormat - Enum in ome.jxr.image

Enumeration of available color format entries.

InternalColorFormat(Integer...) - Constructor for enum ome.jxr.image.InternalColorFormat

internalEquals(Object[], Object[]) - Static method in class loci.poi.hpsf.Util

internalOffsets - Variable in class loci.formats.in.AmiraReader.HxRLE

internalStamps - Variable in class loci.formats.in.MetamorphReader

INTEROPERABILITY_INDEX_R98 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

A value to be used with the "InteroperabilityIndex" tag.

INTEROPERABILITY_INDEX_THM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

A value to be used with the "InteroperabilityIndex" tag.

interpolate(short[], byte[], int[], int, int, boolean) - Static method in class loci.formats.ImageTools

intersection(Region) - Method in class loci.common.Region

Returns a Region representing the intersection of this Region with the given Region.

IntersectionPtg - Class in loci.poi.hssf.record.formula

IntersectionPtg() - Constructor for class loci.poi.hssf.record.formula.IntersectionPtg

IntersectionPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.IntersectionPtg

intersects(Region) - Method in class loci.common.Region

Returns true if this region intersects the given region.

intFormat(int, int) - Static method in class loci.formats.in.MetamorphReader

Formats an integer value with leading 0s if needed.

intFormatMax(int, int) - Static method in class loci.formats.in.MetamorphReader

Formats an integer with leading 0 using maximum sequence number.

IntList - Class in loci.poi.util

A List of int's; as full an implementation of the java.util.List interface as possible, with an eye toward minimal creation of objects the mimicry of List is as follows: if possible, operations designated 'optional' in the List interface are attempted wherever the List interface refers to an Object, substitute int wherever the List interface refers to a Collection or List, substitute IntList the mimicry is not perfect, however: operations involving Iterators or ListIterators are not supported remove(Object) becomes removeValue to distinguish it from remove(int index) subList is not supported

IntList() - Constructor for class loci.poi.util.IntList

create an IntList of default size

IntList(int) - Constructor for class loci.poi.util.IntList

IntList(IntList) - Constructor for class loci.poi.util.IntList

create a copy of an existing IntList

IntList(int, int) - Constructor for class loci.poi.util.IntList

create an IntList with a predefined initial size

IntList2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of integers.

IntList2d() - Constructor for class loci.poi.util.IntList2d

IntMapper - Class in loci.poi.util

A List of objects that are indexed AND keyed by an int; also allows for getting the index of a value in the list

IntMapper() - Constructor for class loci.poi.util.IntMapper

create an IntMapper of default size

IntMapper(int) - Constructor for class loci.poi.util.IntMapper

IntPtg - Class in loci.poi.hssf.record.formula

Integer (short intger) Stores a (java) short value in a formula

IntPtg() - Constructor for class loci.poi.hssf.record.formula.IntPtg

IntPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.IntPtg

IntPtg(String) - Constructor for class loci.poi.hssf.record.formula.IntPtg

intsToBytes(int[], boolean) - Static method in class loci.common.DataTools

Translates an array of int values into an array of byte values.

intToBytes(int, boolean) - Static method in class loci.common.DataTools

Translates the int value into an array of four bytes.

intToMultiByte(int) - Static method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

intValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as an int.

inUse - Variable in class loci.common.CBZip2InputStream.Data

INV_ICT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Identifier for the Inverse Irreversible Component Transformation (INV_ICT).

INV_RCT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Identifier for the Inverse Reversible Component Transformation (INV_RCT).

INVALID_LICENSE_MSG - Static variable in class loci.formats.services.LuraWaveServiceImpl

Message to display if an invalid LuraWave license code is given.

INVALID_PIXELS - Static variable in class loci.formats.in.FEIReader

invalidate(Location) - Method in class loci.common.CaseInsensitiveLocation.Cache

Remove a directory from the cache.

invalidate() - Method in class loci.common.CaseInsensitiveLocation.Cache

Remove all content from the cache.

invalidateCache() - Static method in class loci.common.CaseInsensitiveLocation

Remove (invalidate) cached content for all directories.

invalidateCache(File) - Static method in class loci.common.CaseInsensitiveLocation

Remove (invalidate) cached content for the specified directory.

InvCompTransf - Class in jj2000.j2k.image.invcomptransf

This class apply inverse component transformations to the tiles depending on specification read from the codestream header.

InvCompTransf(BlkImgDataSrc, DecoderSpecs, int[]) - Constructor for class jj2000.j2k.image.invcomptransf.InvCompTransf

Constructs a new ForwCompTransf object that operates on the specified source of image data.

InveonReader - Class in loci.formats.in

InveonReader is the file format reader for Inveon files.

InveonReader() - Constructor for class loci.formats.in.InveonReader

Constructs a new Inveon reader.

inverseFill - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Whether bits are inserted in reverse order (TIFF FillOrder 2).

InverseWT - Class in jj2000.j2k.wavelet.synthesis

This abstract class extends the WaveletTransform one with the specifics of inverse wavelet transforms.

InverseWT(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InverseWT

Initializes this object with the given source of wavelet coefficients.

invert() - Method in class loci.plugins.util.RecordedImageProcessor

invert - Variable in class loci.poi.hssf.record.AreaFormatRecord

inverted - Variable in class loci.formats.in.DicomReader

InvertedCMYKColorSpace - Class in com.sun.media.imageioimpl.common

Singleton class representing a simple, mathematically defined inverted CMYK color space.

InvertedCMYKColorSpace() - Constructor for class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

invertLut() - Method in class loci.plugins.util.RecordedImageProcessor

invertX - Variable in class loci.formats.in.RHKReader

invertY - Variable in class loci.formats.in.BMPReader

invertY - Variable in class loci.formats.in.ICSReader

Whether or not the image is inverted along the Y axis.

invertY - Variable in class loci.formats.in.RHKReader

invICT(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply inverse irreversible component transformation to obtain requested component from specified block of data.

invokeMethod(String, String, FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow

invRCT(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply inverse component transformation to obtain requested component from specified block of data.

invWT - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

InvWT - Interface in jj2000.j2k.wavelet.synthesis

This interface extends the WaveletTransform with the specifics of inverse wavelet transforms.

InvWTAdapter - Class in jj2000.j2k.wavelet.synthesis

This class provides default implementation of the methods in the 'InvWT' interface.

InvWTAdapter(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Instantiates the 'InvWTAdapter' object using the specified 'MultiResImgData' source.

InvWTData - Interface in jj2000.j2k.wavelet.synthesis

This interface extends the MultiResImgData interface with the methods that are necessary for inverse wavelet data (i.e.

InvWTFull - Class in jj2000.j2k.wavelet.synthesis

This class implements the InverseWT with the full-page approach for int and float data.

InvWTFull(CBlkWTDataSrcDec, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTFull

Initializes this object with the given source of wavelet coefficients.

ios - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

IOTester - Class in loci.tests

A class for testing RandomAccessInputStream's efficiency in various cases.

IOTester() - Constructor for class loci.tests.IOTester

IOUtils - Class in loci.poi.util

IOUtils() - Constructor for class loci.poi.util.IOUtils

ipixels - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

IPLabReader - Class in loci.formats.in

IPLabReader is the file format reader for IPLab (.IPL) files.

IPLabReader() - Constructor for class loci.formats.in.IPLabReader

Constructs a new IPLab reader.

IPW_MAGIC_BYTES - Static variable in class loci.formats.in.IPWReader

IPWReader - Class in loci.formats.in

IPWReader is the file format reader for Image-Pro Workspace (IPW) files.

IPWReader() - Constructor for class loci.formats.in.IPWReader

Constructs a new IPW reader.

ir - Variable in class loci.plugins.in.ThumbLoader

IRandomAccess - Interface in loci.common

Interface for random access into structures (e.g., files or arrays).

iris - Variable in class loci.formats.in.ZeissLSMReader.Recording

iris - Variable in class ome.xml.model.Objective

is - Variable in class jj2000.j2k.util.ISRandomAccessIO

The InputStream that is wrapped

IS - Static variable in class loci.formats.in.DicomReader

is - Variable in class loci.poi.util.BlockingInputStream

is1DMode - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

IS_EOS - Static variable in class jj2000.j2k.util.MsgPrinter

Signals that the end-of-string was reached

IS_FALSE_COLOR - Static variable in class loci.tests.testng.Configuration

is_fixed - Variable in class mdbtools.libmdb.MdbColumn

IS_GLITCHED - Static variable in class loci.plugins.prefs.OptionsDialog

Flag indicating whether to invoke workaround for AWT refresh bug.

IS_INDEXED - Static variable in class loci.tests.testng.Configuration

IS_INTERLEAVED - Static variable in class loci.tests.testng.Configuration

IS_JET3(MdbHandle) - Static method in class mdbtools.libmdb.macros

IS_JET4(MdbHandle) - Static method in class mdbtools.libmdb.macros

IS_LITTLE - Static variable in class loci.formats.in.ImarisReader

Specifies endianness.

IS_LITTLE_ENDIAN - Static variable in class loci.tests.testng.Configuration

IS_NEWLINE - Static variable in class jj2000.j2k.util.MsgPrinter

Signals that a newline was found

IS_RGB - Static variable in class loci.tests.testng.Configuration

IS_STUB - Static variable in class com.luratech.lwf.lwfDecoder

is_text_type(int) - Static method in class mdbtools.mdb_export

IS_TRANSMISSION - Static variable in class loci.formats.in.CellSensReader

IS_WINDOWS - Static variable in class loci.common.Location

isAbsolute() - Method in class loci.common.Location

Tests whether or not this path name is absolute.

isAccessibilityIgnored() - Method in class loci.common.ReflectedUniverse

Deprecated.

Gets whether access modifiers (protected, private, etc.) are ignored.

isADateFormat(int, String) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a format ID and its format String, will check to see if the format represents a date format or not.

IsAddop(char) - Method in class loci.poi.hssf.model.FormulaParser

Recognize an Addop

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord

isAfter(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

returns whether this cell is after the passed in cell

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord

isAggregate() - Method in class mdbtools.dbengine.SelectEngine

An aggregate query is true if any function is an aggregate function

isAllocated(int, int) - Method in class loci.poi.util.IntList2d

isAllSet(int) - Method in class loci.poi.util.BitField

Are all of the bits set or not? This is a stricter test than isSet, in that all of the bits in a multi-bit set must be set for this method to return true

isAlmostEqual(Quantity, Quantity) - Method in class loci.tests.testng.FormatReaderTest

IsAlNum(char) - Method in class loci.poi.hssf.model.FormulaParser

Recognize an Alphanumeric

IsAlpha(char) - Method in class loci.poi.hssf.model.FormulaParser

Recognize an Alpha Character

isAscending() - Method in class mdbtools.dbengine.sql.OrderBy

isAttributeRequired(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

isAuto() - Method in class loci.poi.hssf.record.LineFormatRecord

automatic format

isAutoBackground() - Method in class loci.poi.hssf.record.TextRecord

isAutoColor() - Method in class loci.poi.hssf.record.TextRecord

true = automaticly selected colour, false = user-selected

isAutofill() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

whether object uses an automatic fill style

isAutoGeneratedText() - Method in class loci.poi.hssf.record.TextRecord

isAutoLabelDeleted() - Method in class loci.poi.hssf.record.TextRecord

isAutoline() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

whether object uses an automatic line style

isAutomatic() - Method in class loci.poi.hssf.record.AreaFormatRecord

automatic formatting

isAutomaticCategoryCrossing() - Method in class loci.poi.hssf.record.ValueRangeRecord

category crossing point is automatically selected

isAutomaticMajor() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic major unit selected

isAutomaticMaximum() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic maximum value selected

isAutomaticMinimum() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic minimum value selected

isAutomaticMinor() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic minor unit selected

isAutoPlotArea() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

??

isAutoPosition() - Method in class loci.poi.hssf.record.FrameRecord

excel calculates the position automatically

isAutoPosition() - Method in class loci.poi.hssf.record.LegendRecord

automatic positioning (1=docked)

isAutorotate() - Method in class loci.poi.hssf.record.TickRecord

automatically rotate the text

isAutoscale() - Method in class loci.plugins.in.ImporterOptions

isAutoSeries() - Method in class loci.poi.hssf.record.LegendRecord

excel 5 only (true)

isAutoSize() - Method in class loci.poi.hssf.record.FrameRecord

excel calculates the size automatically if true

isAutoTextBackground() - Method in class loci.poi.hssf.record.TickRecord

use the quote unquote automatic color for text background

isAutoTextColor() - Method in class loci.poi.hssf.record.TickRecord

use the quote unquote automatic color for text

isAutoXPositioning() - Method in class loci.poi.hssf.record.LegendRecord

position of legend on the x axis is automatic

isAutoYPositioning() - Method in class loci.poi.hssf.record.LegendRecord

position of legend on the y axis is automatic

isBaxcel() - Method in class loci.poi.hssf.record.formula.AttrPtg

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord

isBefore(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

returns whether this cell is before the passed in cell

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord

isBigTiff - Variable in class loci.formats.out.TiffWriter

Whether or not the output file is a BigTIFF file.

isBigTiff() - Method in class loci.formats.tiff.IFD

Gets whether this is a BigTIFF IFD.

isBigTiff() - Method in class loci.formats.tiff.TiffParser

Returns whether or not the current TIFF file contains BigTIFF data.

isBigTiff() - Method in class loci.formats.tiff.TiffSaver

Returns whether or not we are writing BigTIFF data.

isBilevel - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

isBilevel - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

isBinary(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

isBinary - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

isBitOnByteBoundary() - Method in class loci.common.RandomAccessInputStream

Checks if the current position is on a byte boundary, that is the next bit in the byte array is the first bit in a byte.

isBitOnByteBoundary() - Method in class loci.formats.codec.BitBuffer

Deprecated.

Checks if the current position is on a byte boundary, that is the next bit in the byte array is the first bit in a byte.

isBlack(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

is the specified black red? if the node does not exist, sure, it's black, thank you

isBlack(int) - Method in class loci.poi.util.BinaryTree.Node

is this node black?

isBlipId() - Method in class loci.poi.ddf.EscherProperty

isBoolean() - Method in class loci.poi.hssf.record.BoolErrRecord

Indicates whether the call holds a boolean value

isBorder() - Method in class loci.poi.hssf.record.DatRecord

data table has a border

isBottomUp - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

isBuiltInName() - Method in class loci.poi.hssf.record.NameRecord

Convenience Function to determine if the name is a built-in name

isBZip2File(String) - Static method in class loci.common.BZip2Handle

Returns true if the given filename is a BZip2 file.

isCached() - Method in class com.sun.media.imageio.stream.RawImageInputStream

isCachedFile() - Method in class com.sun.media.imageio.stream.RawImageInputStream

isCachedMemory() - Method in class com.sun.media.imageio.stream.RawImageInputStream

isCellDateFormatted(HSSFCell) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Check if a cell contains a date Since dates are stored internally in Excel as double values we infer it is a date if it is formatted as such.

isCellInternalDateFormatted(HSSFCell) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Check if a cell contains a date, checking only for internal excel date formats.

isCellOk(String) - Method in class loci.poi.hssf.util.RangeAddress

isCertain() - Method in class loci.formats.AxisGuesser

Gets whether the guesser is confident that all axes are correct.

isChartTypeManuallyFormatted() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Has the chart type been manually formatted?

isColAbsolute() - Method in class loci.poi.hssf.util.CellReference

isColorLut() - Method in class loci.plugins.util.RecordedImageProcessor

isColorModeColorized() - Method in class loci.plugins.in.ImporterOptions

isColorModeComposite() - Method in class loci.plugins.in.ImporterOptions

isColorModeCustom() - Method in class loci.plugins.in.ImporterOptions

isColorModeDefault() - Method in class loci.plugins.in.ImporterOptions

isColorModeGrayscale() - Method in class loci.plugins.in.ImporterOptions

isColRelative() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

isColRelative() - Method in class loci.poi.hssf.record.formula.ReferencePtg

isColumnBroken(short) - Method in class loci.poi.hssf.model.Sheet

Queries if the specified column has a page break

isColumnBroken(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determines if there is a page break at the indicated column

isColumnGroupCollapsed(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

isColumnGroupHiddenByParent(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

isColumnHidden(short) - Method in class loci.poi.hssf.model.Sheet

Get the hidden property for a given column.

isColumnHidden(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Get the hidden state for a given column.

isCommandName() - Method in class loci.poi.hssf.record.NameRecord

isCompatibleRaster(Raster) - Method in class loci.formats.gui.Index16ColorModel

isCompatibleRaster(Raster) - Method in class loci.formats.gui.SignedColorModel

isCompatibleRaster(Raster) - Method in class loci.formats.gui.UnsignedIntColorModel

isComplex() - Method in class loci.poi.ddf.EscherProperty

isComplexFunction() - Method in class loci.poi.hssf.record.NameRecord

isCompressed - Variable in class loci.formats.in.LIMReader

isCompressed() - Method in class loci.poi.ddf.EscherMetafileBlip

isCompressed() - Method in class loci.poi.ddf.EscherPictBlip

isCompressionLossless - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Whether the compression is lossless.

isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieves a value indicating whether the compression is lossless.

isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

isCompressionLossless - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Lossless flag for known compression types.

isCompSpecified(int) - Method in class jj2000.j2k.ModuleSpec

Whether or not specifications have been entered for the given component.

isCompTransfUsed() - Method in class jj2000.j2k.image.CompTransfSpec

Check if component transformation is used in any of the tiles.

isConcatenate() - Method in class loci.plugins.in.ImporterOptions

isConfigFile(Location, String) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

isContainer(String) - Method in class loci.formats.in.NativeQTReader

Checks if the given String is a container atom type.

isContainerRecord() - Method in class loci.poi.ddf.EscherRecord

Determine whether this is a container record by inspecting the option field.

isContiguous - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

isContinueNext() - Method in class loci.poi.hssf.record.RecordInputStream

Returns true iif a Continue record is next in the excel stream

isConvertible(Unit<Q>) - Method in class ome.units.unit.Unit

isCrossCategoryAxisAtMaximum() - Method in class loci.poi.hssf.record.ValueRangeRecord

category axis to cross at maximum value

isCrossesFarRight() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

axis crosses at the far right

isCS_sRGB() - Method in class loci.formats.gui.TwoChannelColorSpace

isCustomNumberFormat() - Method in class loci.poi.hssf.record.LinkedDataRecord

true if this object has a custom number format

isDataBufferBitContiguous(SampleModel) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Determines whether the DataBuffer is filled without any interspersed padding bits.

isDataTable() - Method in class loci.poi.hssf.record.LegendRecord

1 if chart contains data table

isDataTypeOK(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns true if the given data type may be used for the data associated with this tag.

isDate - Variable in class loci.poi.hssf.record.AxisOptionsRecord

isDefaultBase() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default base unit

isDefaultCross() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default crossing point

isDefaultDateSettings() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use default date setttings for this axis

isDefaultMajor() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default major unit

isDefaultMaximum() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default maximum category

isDefaultMinimum() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default minimum category

isDefaultMinorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default minor unit

isDefaultPlotDimensions() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Indicates that the default area dimensions should be used.

isDeflate - Variable in class loci.formats.in.DicomReader

isDeleteOK() - Method in class loci.poi.poifs.filesystem.DirectoryNode

extensions use this method to verify internal rules regarding deletion of the underlying store.

isDeleteOK() - Method in class loci.poi.poifs.filesystem.DocumentNode

extensions use this method to verify internal rules regarding deletion of the underlying store.

isDeleteOK() - Method in class loci.poi.poifs.filesystem.EntryNode

extensions use this method to verify internal rules regarding deletion of the underlying store.

isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns true if the quantizer of given tile-component uses derived quantization step sizes.

isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns true if given tile-component uses derived quantization step sizes.

isDerived(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec

Returns true if given tile-component uses derived quantization step size.

IsDigit(char) - Method in class loci.poi.hssf.model.FormulaParser

Recognize a Decimal Digit

isDimensions(String) - Method in class loci.formats.in.ND2Handler

Returns whether or not the specified key is denotes dimensions.

isDirectory() - Method in class loci.common.Location

Returns true if this pathname exists and represents a directory.

isDirectory() - Method in class loci.poi.poifs.property.DirectoryProperty

isDirectory() - Method in class loci.poi.poifs.property.DocumentProperty

isDirectory() - Method in class loci.poi.poifs.property.Property

isDirectoryEntry() - Method in class loci.poi.poifs.filesystem.DirectoryNode

is this a DirectoryEntry?

isDirectoryEntry() - Method in interface loci.poi.poifs.filesystem.Entry

is this a DirectoryEntry?

isDirectoryEntry() - Method in class loci.poi.poifs.filesystem.EntryNode

is this a DirectoryEntry?

isDisplayAsPercentage() - Method in class loci.poi.hssf.record.AreaRecord

results displayed as percentages

isDisplayAsPercentage() - Method in class loci.poi.hssf.record.BarRecord

display chart values as a percentage

isDisplayFormulas() - Method in class loci.poi.hssf.model.Sheet

Returns if formulas are displayed.

isDisplayFormulas() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns if formulas are displayed.

isDisplayGridlines() - Method in class loci.poi.hssf.model.Sheet

Returns if gridlines are displayed.

isDisplayGridlines() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns if gridlines are displayed.

isDisplayRowColHeadings() - Method in class loci.poi.hssf.model.Sheet

Returns if RowColHeadings are displayed.

isDisplayRowColHeadings() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns if RowColHeadings are displayed.

isDocumentEntry() - Method in class loci.poi.poifs.filesystem.DocumentNode

is this a DocumentEntry?

isDocumentEntry() - Method in interface loci.poi.poifs.filesystem.Entry

is this a DocumentEntry?

isDocumentEntry() - Method in class loci.poi.poifs.filesystem.EntryNode

is this a DocumentEntry?

isDocumentSummaryInformation() - Method in class loci.poi.hpsf.PropertySet

Checks whether this PropertySet is a Document Summary Information.

isDocumentSummaryInformation() - Method in class loci.poi.hpsf.SpecialPropertySet

isDoNotSizeWithWindow() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Do not size the chart when the window changes size

isDrawTicks() - Method in class loci.poi.hssf.record.LineFormatRecord

draw tick marks

isEmpty() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

is this DirectoryEntry empty?

isEmpty() - Method in class loci.poi.poifs.filesystem.DirectoryNode

is this DirectoryEntry empty?

isEmpty() - Method in class loci.poi.util.DoubleList

Returns true if this list contains no elements.

isEmpty() - Method in class loci.poi.util.IntList

Returns true if this list contains no elements.

isEmpty() - Method in class loci.poi.util.ShortList

Returns true if this list contains no elements.

isEmpty() - Method in class ome.xml.model.ReferenceList

isEnabled - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

isEncodingEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

isEOCFound - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Whether or not a EOC marker has been found instead of a SOT

isEOFInBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Whether the end of the file is in the current buffer or not

isEOLAligned - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService

Determine whether or not two OMEXMLMetadata objects are equal.

isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord

isEqual(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

returns whether this cell represents the same cell (NOT VALUE)

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord

isError() - Method in class loci.poi.hssf.record.BoolErrRecord

Indicates whether the call holds an error value

isEven(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

isExtendedText() - Method in class loci.poi.hssf.record.UnicodeString

isFalse() - Method in class loci.poi.ddf.EscherBoolProperty

Whether this boolean property is false

isFalseColor() - Method in class loci.formats.FileStitcher

isFalseColor() - Method in class loci.formats.FormatReader

isFalseColor() - Method in interface loci.formats.IFormatReader

Returns false if IFormatReader.isIndexed() is false, or if IFormatReader.isIndexed() is true and the lookup table represents "real" color data.

isFalseColor() - Method in class loci.formats.ImageReader

isFalseColor() - Method in class loci.formats.in.FilePatternReader

isFalseColor() - Method in class loci.formats.ReaderWrapper

isFalseColor() - Method in class loci.tests.testng.Configuration

isFiji() - Static method in class loci.plugins.Updater

Returns true if the current ImageJ instance is actually a Fiji instance.

isFile() - Method in class loci.common.Location

Returns true if this pathname exists and represents a regular file.

isFilled() - Method in class loci.formats.ChannelFiller

Returns true if the indices are being factored out.

isFirstBitDepthTable - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

isFirstColRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg

isFirstColRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg

isFirstRowRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg

isFirstRowRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg

isFirstTime() - Method in class loci.plugins.in.ImporterOptions

isFixed() - Method in class loci.formats.FilePatternBlock

isFixedMap() - Method in class ome.metakit.ColumnMap

Return whether or not this map represents a fixed-type column.

isFLIM - Variable in class loci.formats.in.ImspectorReader

Whether or not this file contains FLIM data.

isFloatingPoint(IFormatReader) - Static method in class loci.formats.FormatTools

Determines whether the given reader represents any floating point data.

isFloatingPoint(int) - Static method in class loci.formats.FormatTools

Determines whether the given pixel type is floating point or integer.

isForceThumbnails() - Method in class loci.plugins.in.ImporterOptions

isFormulaInShared(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord

isFreezePane() - Method in class loci.poi.hssf.util.PaneInformation

Returns true if this is a Freeze pane, false if it is a split pane.

isFullPlane(int, int, int, int) - Method in class loci.formats.FormatWriter

Returns true if the given rectangle coordinates correspond to a full image in the given series.

isFullyNonReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec

Check the irreversibility of the whole image.

isFullyReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec

Check the reversibility of the whole image.

isFunctionName() - Method in class loci.poi.hssf.record.NameRecord

isGenerated() - Method in class loci.poi.hssf.record.TextRecord

isGoto() - Method in class loci.poi.hssf.record.formula.AttrPtg

isGrayscaleMapping(IndexColorModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Tests whether the color indices represent a gray-scale image with the indicated number of bits over the color component range [0,255].

isGreaterThanEpsilon(double) - Method in class loci.formats.in.SlidebookReader

Returns true if the given double is greater than epsilon (defined here as 0.000001), i.e.

isGridsPrinted() - Method in class loci.poi.hssf.model.Sheet

get whether gridlines are printed.

isGridsPrinted() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether gridlines are printed.

isGroupFiles() - Method in class loci.formats.FileStitcher

isGroupFiles() - Method in class loci.formats.FormatReader

isGroupFiles() - Method in interface loci.formats.IFormatReader

Returns true if we should group files in multi-file formats.

isGroupFiles() - Method in class loci.formats.ImageReader

isGroupFiles() - Method in class loci.formats.in.FilePatternReader

isGroupFiles() - Method in class loci.formats.ReaderWrapper

isGroupFiles() - Method in class loci.plugins.in.ImporterOptions

isGroupFiles(String[]) - Method in class loci.plugins.macro.LociFunctions

isGZipFile(String) - Static method in class loci.common.GZipHandle

Returns true if the given filename is a gzip file.

isHidden() - Method in class loci.common.Location

Returns true if the pathname is 'hidden'.

isHidden() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether the cell is hidden or not

isHiddenName() - Method in class loci.poi.hssf.record.NameRecord

isHorizontal() - Method in class loci.poi.hssf.record.BarRecord

true to display horizontal bar charts, false for vertical

isHorizontalBorder() - Method in class loci.poi.hssf.record.DatRecord

has a horizontal border

isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFChildAnchor

isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

isHTTP() - Method in class loci.plugins.in.ImporterOptions

isIFD - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

isIFDPointer() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns true if this tag is used to point to an IFD structure containing additional tags.

isIgnoredFile(String, ConfigurationTree) - Static method in class loci.tests.testng.TestTools

Determines if the given file should be ignored by the test suite.

isImageSimple - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

isImageSimple - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

isInCache(int[]) - Method in class loci.formats.cache.Cache

Returns true if the object at the given dimensional position is in the cache.

isInCache(int) - Method in class loci.formats.cache.Cache

Returns true if the object at the given index is in the cache.

isIndentNotParentAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the alignment in this XF instead of the parent XF.

isIndentNotParentBorder() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the border in this XF instead of the parent XF.

isIndentNotParentCellOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the locking/hidden in this XF instead of the parent XF.

isIndentNotParentFont() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the font in this XF instead of the parent XF.

isIndentNotParentFormat() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the format in this XF instead of the parent XF.

isIndentNotParentPattern() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the pattern in this XF instead of the parent XF.

isIndexed - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Indicates that the colorModel is a IndexColorModel

isIndexed() - Method in class loci.formats.ChannelFiller

isIndexed() - Method in class loci.formats.ChannelMerger

isIndexed() - Method in class loci.formats.FileStitcher

isIndexed() - Method in class loci.formats.FormatReader

isIndexed() - Method in interface loci.formats.IFormatReader

Gets whether the image planes are indexed color.

isIndexed() - Method in class loci.formats.ImageReader

isIndexed() - Method in class loci.formats.in.FilePatternReader

isIndexed() - Method in class loci.formats.ReaderWrapper

isIndexed(String[]) - Method in class loci.plugins.macro.LociFunctions

isIndexed() - Method in class loci.tests.testng.Configuration

isIndicesForGrayscale(byte[], byte[], byte[]) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Tests whether the color indices represent a gray-scale image.

isInitialized - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

Initialization flag.

isInitialized - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

isInList(String, List) - Method in class loci.poi.POIDocument

Checks to see if the String is in the list, used when copying nodes between one POIFS and another

isInsertingEmpty - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

isInstance(Class<?>, Object) - Static method in class loci.common.ReflectedUniverse

Deprecated.

Returns whether the given object is compatible with the specified class for the purposes of reflection.

isIntegral - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFField

isIntegral() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Indicates whether the value associated with the field is of integral data type.

isIntensity() - Method in class loci.formats.in.SDTReader

Gets whether the reader is combining each lifetime histogram into a summed intensity image plane.

isInterleaved() - Method in class loci.formats.ChannelMerger

isInterleaved() - Method in class loci.formats.FileStitcher

isInterleaved(int) - Method in class loci.formats.FileStitcher

isInterleaved() - Method in class loci.formats.FormatReader

isInterleaved(int) - Method in class loci.formats.FormatReader

isInterleaved() - Method in class loci.formats.FormatWriter

isInterleaved() - Method in interface loci.formats.IFormatReader

Gets whether or not the channels are interleaved.

isInterleaved(int) - Method in interface loci.formats.IFormatReader

Gets whether or not the given sub-channel is interleaved.

isInterleaved() - Method in interface loci.formats.IFormatWriter

Gets whether or not the channels in an image are interleaved.

isInterleaved() - Method in class loci.formats.ImageReader

isInterleaved(int) - Method in class loci.formats.ImageReader

isInterleaved() - Method in class loci.formats.ImageWriter

isInterleaved() - Method in class loci.formats.in.FilePatternReader

isInterleaved(int) - Method in class loci.formats.in.FilePatternReader

isInterleaved(int) - Method in class loci.formats.in.ICSReader

isInterleaved(int) - Method in class loci.formats.in.SDTReader

isInterleaved() - Method in class loci.formats.ReaderWrapper

isInterleaved(int) - Method in class loci.formats.ReaderWrapper

isInterleaved() - Method in class loci.formats.WriterWrapper

isInterleaved(String[]) - Method in class loci.plugins.macro.LociFunctions

isInterleaved() - Method in class loci.tests.testng.Configuration

isInterleavedSubC(Double, String[]) - Method in class loci.plugins.macro.LociFunctions

isInternalDateFormat(int) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a format ID this will check whether the format represents an internal excel date format or not.

isInValueSection() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

isInValueSection() - Method in class loci.poi.hssf.record.BlankRecord

isInValueSection() - Method in class loci.poi.hssf.record.BoolErrRecord

isInValueSection() - Method in class loci.poi.hssf.record.DBCellRecord

isInValueSection() - Method in class loci.poi.hssf.record.FormulaRecord

isInValueSection() - Method in class loci.poi.hssf.record.LabelRecord

isInValueSection() - Method in class loci.poi.hssf.record.LabelSSTRecord

isInValueSection() - Method in class loci.poi.hssf.record.NumberRecord

isInValueSection() - Method in class loci.poi.hssf.record.Record

DBCELL, ROW, VALUES all say yes

isInValueSection() - Method in class loci.poi.hssf.record.RKRecord

isInValueSection() - Method in class loci.poi.hssf.record.RowRecord

isInValueSection() - Method in class loci.poi.hssf.record.SharedFormulaRecord

Mirroring formula records so it is registered in the ValueRecordsAggregate

isInValueSection() - Method in class loci.poi.hssf.record.StringRecord

isInvert() - Method in class loci.poi.hssf.record.AreaFormatRecord

swap foreground and background colours when data is negative

isInverted - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

isInvertedLut() - Method in class loci.plugins.util.RecordedImageProcessor

isInvertX() - Method in class loci.formats.in.PrairieMetadata

Gets whether the stage position X coordinates are inverted (i.e., left-to-right).

isInvertY() - Method in class loci.formats.in.PrairieMetadata

Gets whether the stage position Y coordinates are inverted (i.e., bottom-to-top).

isIsDate() - Method in class loci.poi.hssf.record.AxisOptionsRecord

this is a date axis

isItalic() - Method in class loci.poi.hssf.record.FontRecord

get whether the font is to be italics or not

isJNG - Variable in class loci.formats.in.MNGReader

isJP2K - Variable in class loci.formats.in.DicomReader

isJPEG - Variable in class loci.formats.in.BaseZeissReader

isJPEG - Variable in class loci.formats.in.DicomReader

isJPEG - Variable in class loci.formats.in.NativeND2Reader

Whether or not the pixel data is compressed using JPEG 2000.

isJVM64Bit() - Method in class loci.formats.gui.LegacyQTTools

Whether this JVM is 64-bit.

isLabelAsPercentage() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show category label/value as percentage (pie charts only)

isLastColRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg

isLastColRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg

isLastRowRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg

isLastRowRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg

isLeaf - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

isLeaf(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

isLeftChild(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

is this node its parent's left child? mind you, the node, or its parent, may not exist.

isLegacy() - Method in class loci.formats.DelegateReader

Gets whether to use the legacy reader by default.

isLetter(String) - Static method in class loci.poi.hssf.util.RangeAddress

isLicenseCodeException(FormatException) - Static method in class loci.plugins.util.LuraWave

Returns true if the given exception was cause by a missing or invalid LuraWave license code.

isLittleEndian - Variable in class loci.common.NIOInputStream

Endianness of the stream.

isLittleEndian() - Method in class loci.common.NIOInputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class loci.common.RandomAccessInputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class loci.common.RandomAccessOutputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class loci.formats.FileStitcher

isLittleEndian() - Method in class loci.formats.FormatReader

isLittleEndian() - Method in interface loci.formats.IFormatReader

Gets whether the data is in little-endian format.

isLittleEndian() - Method in class loci.formats.ImageReader

isLittleEndian() - Method in class loci.formats.in.FilePatternReader

isLittleEndian() - Method in class loci.formats.ReaderWrapper

isLittleEndian() - Method in class loci.formats.tiff.IFD

Gets whether the TIFF information in this IFD is little-endian.

isLittleEndian() - Method in class loci.formats.tiff.TiffSaver

Returns whether or not we are writing little-endian data.

isLittleEndian(String[]) - Method in class loci.plugins.macro.LociFunctions

isLittleEndian() - Method in class loci.tests.testng.Configuration

isLittleEndian - Variable in class ome.jxr.parser.FileParser

isLittleEndian() - Method in class ome.jxr.parser.FileParser

isLoadedFromMemo() - Method in class loci.formats.Memoizer

Returns whether the ReaderWrapper.reader instance currently active was loaded from the memo file during Memoizer.setId(String).

isLocal() - Method in class loci.plugins.in.ImporterOptions

isLocked() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

true if object is locked when sheet has been protected

isLocked() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether the cell is locked or not

isLogarithmicScale() - Method in class loci.poi.hssf.record.ValueRangeRecord

use logarithmic scale

isLogUnsupportedTypes() - Static method in class loci.poi.hpsf.VariantSupport

Checks whether logging of unsupported variant types warning is turned on or off.

isLossless - Variable in class loci.formats.in.NativeND2Reader

Whether or not the pixel data is losslessly compressed.

isLossless - Variable in class loci.formats.in.ND2Handler

isLossless() - Method in class loci.formats.in.ND2Handler

isLosslessWriter(IFormatWriter) - Static method in class loci.tests.testng.FormatWriterTest

isMacoutlined() - Method in class loci.poi.hssf.record.FontRecord

whether to use the mac outline font style thing (mac only) - Some mac person should comment this instead of me doing it (since I have no idea)

isMacro() - Method in class loci.poi.hssf.record.NameRecord

isMacshadowed() - Method in class loci.poi.hssf.record.FontRecord

whether to use the mac shado font style thing (mac only) - Some mac person should comment this instead of me doing it (since I have no idea)

isMetadataComplete() - Method in class loci.formats.FormatReader

isMetadataComplete() - Method in interface loci.formats.IFormatReader

Returns true if this format's metadata is completely parsed.

isMetadataComplete() - Method in class loci.formats.ImageReader

isMetadataComplete() - Method in class loci.formats.in.FilePatternReader

isMetadataComplete() - Method in class loci.formats.ReaderWrapper

isMetadataComplete(String[]) - Method in class loci.plugins.macro.LociFunctions

isMetadataFiltered() - Method in class loci.formats.FormatReader

isMetadataFiltered() - Method in interface loci.formats.IFormatReader

Returns true if ugly metadata (entries with unprintable characters, and extremely large entries) are discarded from the metadata table.

isMetadataFiltered() - Method in class loci.formats.ImageReader

isMetadataFiltered() - Method in class loci.formats.in.FilePatternReader

isMetadataFiltered() - Method in class loci.formats.ReaderWrapper

isMetadataFiltered(String[]) - Method in class loci.plugins.macro.LociFunctions

isMINC2 - Variable in class loci.formats.in.MINCReader

isMinimumMetadata() - Method in class loci.formats.in.PrairieReader

Gets whether to populate only the minimum required metadata.

isMinMaxPopulated() - Method in class loci.formats.MinMaxCalculator

Returns true if the values returned by getChannelGlobalMinimum/Maximum can be trusted.

isModulo - Variable in class loci.formats.tools.MakeTestOmeTiff

isMultibyte() - Method in class loci.poi.hssf.record.FooterRecord

see the unicode flag

isMultibyte() - Method in class loci.poi.hssf.record.HeaderRecord

see the unicode flag

isND2Nikon() - Static method in class loci.plugins.util.LociPrefs

isNeeded - Variable in class loci.poi.hssf.record.RecalcIdRecord

isNeeded() - Method in class loci.poi.hssf.record.RecalcIdRecord

isNode - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

Flag indicating whether this subband mask is a node or not

isNode - Variable in class jj2000.j2k.wavelet.Subband

True if it is a node in the tree, false if it is a leaf.

isNoFill() - Method in class loci.poi.hssf.usermodel.HSSFShape

isNonStandardICCColorSpace(ColorSpace) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Returns true if the given ColorSpace object is an instance of ICC_ColorSpace but is not one of the standard ColorSpaces returned by ColorSpace.getInstance().

isNormalized() - Method in class loci.formats.FormatReader

isNormalized() - Method in interface loci.formats.IFormatReader

Returns true if we should normalize float data.

isNormalized() - Method in class loci.formats.ImageReader

isNormalized() - Method in class loci.formats.in.FilePatternReader

isNormalized() - Method in class loci.formats.ReaderWrapper

isNormalized(Boolean[]) - Method in class loci.plugins.macro.LociFunctions

isNotBigImage() - Method in class loci.tests.testng.OpenBytesPerformanceTest

ISO - Static variable in class loci.formats.in.NikonReader

ISO8601_FORMAT - Static variable in class loci.common.DateTools

ISO 8601 date output formatter without milliseconds.

ISO8601_FORMAT_MS - Static variable in class loci.common.DateTools

ISO 8601 date output formatter with milliseconds.

ISO8601_FORMAT_MS - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output format with milliseconds.

ISO8601_FORMAT_S - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output format without milliseconds.

ISO8601_FORMATTER - Static variable in class loci.common.DateTools

ISO 8601 date formatter without milliseconds.

ISO8601_FORMATTER_MS - Static variable in class loci.common.DateTools

ISO 8601 date formatter with milliseconds.

ISO8601_FORMATTER_MS - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output formatter with milliseconds.

ISO8601_FORMATTER_S - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output formatter without milliseconds.

ISO8601_PARSER - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date input formatter.

ISO_SENSITIVITY - Static variable in class loci.formats.in.CellSensReader

ISO_SPEED_RATINGS - Static variable in class loci.formats.tiff.IFD

isObjectRecord(List, int) - Static method in class loci.poi.hssf.record.EscherAggregate

isOIB - Variable in class loci.formats.in.FV1000Reader

Flag indicating this is an OIB dataset.

isOMERO() - Method in class loci.plugins.in.ImporterOptions

isOMEXMLMetadata(Object) - Method in interface loci.formats.services.OMEXMLService

Checks whether the given object is an OME-XML metadata object.

isOMEXMLMetadata(Object) - Method in class loci.formats.services.OMEXMLServiceImpl

isOMEXMLRoot(Object) - Method in interface loci.formats.services.OMEXMLService

Checks whether the given object is an OME-XML root object.

isOMEXMLRoot(Object) - Method in class loci.formats.services.OMEXMLServiceImpl

isOne() - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor

Returns true or false, depending on whether this instance is equal to 1/1.

isOptimizedChoose() - Method in class loci.poi.hssf.record.formula.AttrPtg

isOptimizedIf() - Method in class loci.poi.hssf.record.formula.AttrPtg

isOrderCertain() - Method in class loci.formats.FileStitcher

isOrderCertain() - Method in class loci.formats.FormatReader

isOrderCertain() - Method in interface loci.formats.IFormatReader

Gets whether the dimension order and sizes are known, or merely guesses.

isOrderCertain() - Method in class loci.formats.ImageReader

isOrderCertain() - Method in class loci.formats.in.FilePatternReader

isOrderCertain() - Method in class loci.formats.ReaderWrapper

isOrderCertain(String[]) - Method in class loci.plugins.macro.LociFunctions

isOriginalMetadataPopulated() - Method in class loci.formats.FormatReader

isOriginalMetadataPopulated() - Method in interface loci.formats.IFormatReader

Returns true if we should save proprietary metadata in the MetadataStore.

isOriginalMetadataPopulated() - Method in class loci.formats.ImageReader

isOriginalMetadataPopulated() - Method in class loci.formats.in.FilePatternReader

isOriginalMetadataPopulated() - Method in class loci.formats.ReaderWrapper

isOriginalMetadataPopulated(Boolean[]) - Method in class loci.plugins.macro.LociFunctions

isOriginalSigned(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

isOriginalSigned(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns true if the original data of the specified component was signed.

isOrigSig - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

An array specifying, for each component,if the data was signed or not

isOrigSigned(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns true if the data read was originally signed in the specified component, false if not.

isOrigSigned(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns true if the data read was originally signed in the specified component, false if not.

isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns true if the data read was originally signed in the specified component, false if not.

isot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT

isPacketWritable() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns true if the current packet is writable i.e.

isPictQTJava() - Static method in class loci.plugins.util.LociPrefs

isPlotVisibleOnly() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Only show visible cells on the chart.

isPositiveValue(Double) - Static method in class loci.formats.FormatTools

isPossible(String, String) - Method in class loci.plugins.prefs.OptionsList

Gets whether the specified value is a possible one for the string option with the given key.

isPredTerm - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

Whether or not predictable termination is requested.

isPreviewName(String) - Method in class loci.formats.in.FV1000Reader

isPrintable() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

object appears when printed

isPrintGridlines() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns whether gridlines are printed.

isPropertySetStream(InputStream) - Static method in class loci.poi.hpsf.PropertySet

Checks whether an InputStream is in the Horrible Property Set Format.

isPropertySetStream(byte[], int, int) - Static method in class loci.poi.hpsf.PropertySet

Checks whether a byte array is in the Horrible Property Set Format.

isProtected() - Method in class loci.poi.hssf.model.Sheet

isPseudoColorLut() - Method in class loci.plugins.util.RecordedImageProcessor

isPsotEqualsZero - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Whether or not the last read Psot value was zero.

isPure - Variable in class loci.poi.hpsf.CustomProperties

Tells whether this object is pure or not.

isPure() - Method in class loci.poi.hpsf.CustomProperties

Tells whether this CustomProperties instance is pure or one or more properties of the underlying low-level property set has been dropped.

isQTExpired() - Method in class loci.formats.gui.LegacyQTTools

Whether QuickTime for Java has expired.

isQTQTJava() - Static method in class loci.plugins.util.LociPrefs

isQuiet() - Method in class loci.plugins.in.ImporterOptions

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

ISRandomAccessIO - Class in jj2000.j2k.util

This class implements a wrapper to turn an InputStream into a RandomAccessIO.

ISRandomAccessIO(InputStream, int, int, int) - Constructor for class jj2000.j2k.util.ISRandomAccessIO

Creates a new RandomAccessIO wrapper for the given InputStream 'is'.

ISRandomAccessIO(InputStream) - Constructor for class jj2000.j2k.util.ISRandomAccessIO

Creates a new RandomAccessIO wrapper for the given InputStream 'is'.

isRaw(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Returns true if file variant is raw format, false if ASCII.

isRaw(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

Returns true if file variant is raw format, false if ASCII.

isRaw() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

isRawCodestream - Variable in class loci.formats.in.JPEG2000MetadataParser

Whether or not the codestream is raw and not JP2 boxed.

isRawCodestream() - Method in class loci.formats.in.JPEG2000MetadataParser

Whether or not the codestream is raw and not JP2 boxed.

isReadActiveOnly - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

Whether to read the active source region only.

isReaderEnabled(FormatEntry) - Method in class loci.plugins.config.ConfigWindow

isReaderEnabled(Class<? extends IFormatReader>) - Static method in class loci.plugins.util.LociPrefs

isReaderPref(String, FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow

isReaderWindowless(FormatEntry) - Method in class loci.plugins.config.ConfigWindow

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

isReadOnly - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Whether the opened file is read only or not (defined by the constructor arguments)

isReadWrite - Variable in class loci.common.NIOFileHandle

Whether or not the file is opened read/write.

isRed(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

is the specified node red? if the node does not exist, no, it's black, thank you

isRed(int) - Method in class loci.poi.util.BinaryTree.Node

is this node red?

isRegex - Variable in class loci.formats.FilePattern

Whether or not this FilePattern represents a regular expression.

isRegex() - Method in class loci.formats.FilePattern

Returns whether or not this pattern is a regular expression.

isRequired - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

isRequired() - Method in enum ome.jxr.ifd.IFDEntry

isRescaling - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

isReserved() - Method in class loci.poi.hssf.record.ValueRangeRecord

reserved, must equal 1 (excel dev.

isReserved1() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

reserved field

isReversed() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

categories are displayed in reverse order

isReversible(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the reversibility of the tile-component data that is provided by the object.

isReversible() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns true if this transform is reversible in current tile.

isReversible() - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns true if this transform is reversible in current tile.

isReversible(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns true if the quantized data is reversible, for the specified tile-component.

isReversible(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec

Check the reversibility of the given tile-component.

isReversible(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Since ROI scaling is always a reversible operation, it calls isReversible() method of it source (the quantizer module).

isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the reversibility of the filter.

isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the reversibility of the filter.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Check the reversibility of filters contained is the given tile-component.

isReversible(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the reversibility of the given tile-component.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the reversibility of the wavelet transform for the specified component and tile.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the reversibility of the wavelet transform for the specified component, in the current tile.

isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the reversibility of the filter.

isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the reversibility of the filter.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Check the reversibility of filters contained is the given tile-component.

isReversible() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the reversibility of the filter.

isReversible(int, int) - Method in interface jj2000.j2k.wavelet.WaveletTransform

Returns the reversibility of the wavelet transform for the specified component and tile.

isRGB() - Method in class loci.formats.ChannelFiller

isRGB() - Method in class loci.formats.ChannelMerger

isRGB() - Method in class loci.formats.ChannelSeparator

isRGB() - Method in class loci.formats.FileStitcher

isRGB() - Method in class loci.formats.FormatReader

isRGB() - Method in interface loci.formats.IFormatReader

Checks if the image planes in the file have more than one channel per IFormatReader.openBytes(int) call.

isRGB() - Method in class loci.formats.ImageReader

isRGB() - Method in class loci.formats.in.FilePatternReader

isRGB() - Method in class loci.formats.ReaderWrapper

isRGB() - Method in interface loci.formats.services.WlzService

Gets boolean for whether image is colour or not.

isRGB() - Method in class loci.formats.services.WlzServiceImpl

isRGB() - Method in class loci.tests.testng.Configuration

isRichText() - Method in class loci.poi.hssf.record.UnicodeString

isRightChild(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

is this node its parent's right child? mind you, the node, or its parent, may not exist.

isRLE - Variable in class loci.formats.in.DicomReader

isROIinPkt() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Tells if there was ROI information in the last written packet

isRoot() - Method in class loci.poi.poifs.filesystem.EntryNode

is this the root of the tree?

isRowAbsolute() - Method in class loci.poi.hssf.util.CellReference

isRowBroken(int) - Method in class loci.poi.hssf.model.Sheet

Queries if the specified row has a page break

isRowBroken(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determines if there is a page break at the indicated row

isRowColHeaderRecord(NameRecord) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

isRowGroupCollapsed(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

isRowGroupHiddenByParent(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

isRowRelative() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

isRowRelative() - Method in class loci.poi.hssf.record.formula.ReferencePtg

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSameAsFullWT(int, int, int) - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSaved() - Method in class loci.plugins.prefs.Option

Gets whether option should be saved to ImageJ preferences file.

isSaved(String) - Method in class loci.plugins.prefs.OptionsList

Gets whether the option with the given key is saved to the ImageJ preferences file.

isSavedToMemo() - Method in class loci.formats.Memoizer

Returns whether the ReaderWrapper.reader instance currently active was saved to the memo file during Memoizer.setId(String).

isSDTIntensity() - Static method in class loci.plugins.util.LociPrefs

isSemiVolatile() - Method in class loci.poi.hssf.record.formula.AttrPtg

isSeriesOn(int) - Method in class loci.plugins.in.ImporterOptions

isSet(String) - Method in class loci.plugins.prefs.OptionsList

Gets the value of the boolean option with the given key.

isSet(int) - Method in class loci.poi.util.BitField

Is the field set or not? This is most commonly used for a single-bit field, which is often used to represent a boolean value; the results of using it for a multi-bit field is to determine whether *any* of its bits are set

isSetByDefault(String) - Method in class loci.plugins.prefs.OptionsList

Gets the default value of the boolean option with the given key.

isShadow() - Method in class loci.poi.hssf.record.AreaRecord

display a shadow for the chart

isShadow() - Method in class loci.poi.hssf.record.BarRecord

display a shadow for the chart

isSharedFormula() - Method in class loci.poi.hssf.record.FormulaRecord

isSheetNameOk() - Method in class loci.poi.hssf.util.RangeAddress

isSheetNameOk(String) - Static method in class loci.poi.hssf.util.RangeAddress

isShowActual() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show actual value of the data point

isShowBubbleSizes() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

??

isShowBubbleSizes() - Method in class loci.poi.hssf.record.TextRecord

isShowCategoryLabelAsPercentage() - Method in class loci.poi.hssf.record.TextRecord

isShowKey() - Method in class loci.poi.hssf.record.TextRecord

true = draw legend

isShowLabel() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

display category label

isShowLabel() - Method in class loci.poi.hssf.record.TextRecord

isShowMetadata() - Method in class loci.plugins.in.ImporterOptions

isShowOMEXML() - Method in class loci.plugins.in.ImporterOptions

isShowPercent() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show value as percentage of total (pie charts only)

isShowSeriesKey() - Method in class loci.poi.hssf.record.DatRecord

shows the series key

isShowValue() - Method in class loci.poi.hssf.record.TextRecord

false = text is category label

isShowValueAsPercentage() - Method in class loci.poi.hssf.record.TextRecord

isSigned - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

isSigned(int) - Static method in class loci.formats.FormatTools

Determines whether the given pixel type is signed or unsigned.

isSingleFile(String) - Method in class loci.formats.FormatReader

isSingleFile(String) - Method in interface loci.formats.IFormatReader

Returns true if this is a single-file format.

isSingleFile(String) - Method in class loci.formats.ImageReader

isSingleFile(String) - Method in class loci.formats.in.AFIReader

isSingleFile(String) - Method in class loci.formats.in.AnalyzeReader

isSingleFile(String) - Method in class loci.formats.in.APLReader

isSingleFile(String) - Method in class loci.formats.in.BDReader

isSingleFile(String) - Method in class loci.formats.in.BioRadReader

isSingleFile(String) - Method in class loci.formats.in.BrukerReader

isSingleFile(String) - Method in class loci.formats.in.CellSensReader

isSingleFile(String) - Method in class loci.formats.in.CellVoyagerReader

isSingleFile(String) - Method in class loci.formats.in.DeltavisionReader

isSingleFile(String) - Method in class loci.formats.in.FakeReader

isSingleFile(String) - Method in class loci.formats.in.FilePatternReader

isSingleFile(String) - Method in class loci.formats.in.FlexReader

isSingleFile(String) - Method in class loci.formats.in.FujiReader

isSingleFile(String) - Method in class loci.formats.in.FV1000Reader

isSingleFile(String) - Method in class loci.formats.in.HitachiReader

isSingleFile(String) - Method in class loci.formats.in.ICSReader

isSingleFile(String) - Method in class loci.formats.in.ImagicReader

isSingleFile(String) - Method in class loci.formats.in.InCellReader

isSingleFile(String) - Method in class loci.formats.in.L2DReader

isSingleFile(String) - Method in class loci.formats.in.LeicaReader

isSingleFile(String) - Method in class loci.formats.in.MetamorphReader

isSingleFile(String) - Method in class loci.formats.in.MIASReader

isSingleFile(String) - Method in class loci.formats.in.MicromanagerReader

isSingleFile(String) - Method in class loci.formats.in.NDPISReader

isSingleFile(String) - Method in class loci.formats.in.NiftiReader

isSingleFile(String) - Method in class loci.formats.in.NRRDReader

isSingleFile(String) - Method in class loci.formats.in.OMETiffReader

isSingleFile(String) - Method in class loci.formats.in.OperettaReader

isSingleFile(String) - Method in class loci.formats.in.PerkinElmerReader

isSingleFile(String) - Method in class loci.formats.in.PrairieReader

isSingleFile(String) - Method in class loci.formats.in.ScanrReader

isSingleFile(String) - Method in class loci.formats.in.ScreenReader

isSingleFile(String) - Method in class loci.formats.in.TCSReader

isSingleFile(String) - Method in class loci.formats.in.TillVisionReader

isSingleFile(String) - Method in class loci.formats.in.VisitechReader

isSingleFile(String) - Method in class loci.formats.in.ZeissLSMReader

isSingleFile(String) - Method in class loci.formats.in.ZeissTIFFReader

isSingleFile(String) - Method in class loci.formats.ReaderWrapper

isSmall(int) - Static method in class loci.poi.poifs.property.Property

does the length indicate a small document?

isSmoothedLine() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show smooth line

isSpace() - Method in class loci.poi.hssf.record.formula.AttrPtg

IsSpecialChar(char) - Method in class loci.poi.hssf.model.FormulaParser

Determines special characters;primarily in use for definition of string literals

isSpecifyRanges() - Method in class loci.plugins.in.ImporterOptions

isSpectralMode() - Method in class loci.formats.in.PrairieMetadata.Sequence

isSplitChannels() - Method in class loci.plugins.in.ImporterOptions

isSplitFocalPlanes() - Method in class loci.plugins.in.ImporterOptions

isSplitTimepoints() - Method in class loci.plugins.in.ImporterOptions

isSpool - Variable in class loci.formats.in.SlidebookReader

isSPWStructure(String) - Method in class loci.formats.in.FakeReader

isStacked() - Method in class loci.poi.hssf.record.AreaRecord

series is stacked

isStacked() - Method in class loci.poi.hssf.record.BarRecord

stack displayed values

isStarted() - Method in class loci.tests.testng.ThreadNameBasedDiscriminator

isString16bit(int) - Method in class loci.poi.hssf.record.SSTRecord

isStruckout() - Method in class loci.poi.hssf.record.FontRecord

get whether the font is to be stricken out or not

isSubbandReversible(Subband) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the reversibility of the current subband.

isSubsampling - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

isSum() - Method in class loci.poi.hssf.record.formula.AttrPtg

isSummaryInformation() - Method in class loci.poi.hpsf.PropertySet

Checks whether this PropertySet represents a Summary Information.

isSummaryInformation() - Method in class loci.poi.hpsf.SpecialPropertySet

isSupportedType(int) - Method in class loci.formats.FormatWriter

isSupportedType(int) - Method in interface loci.formats.IFormatWriter

Checks if the given pixel type is supported.

isSupportedType(int) - Method in class loci.formats.ImageWriter

isSupportedType(int) - Method in class loci.formats.WriterWrapper

isSwapDimensions() - Method in class loci.plugins.in.ImporterOptions

isTable() - Method in interface loci.formats.in.PrairieMetadata.Value

isTable() - Method in class loci.formats.in.PrairieMetadata.ValueItem

isTable() - Method in class loci.formats.in.PrairieMetadata.ValueTable

istermbufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The buffer for indicating terminated passes (avoids reallocation for each code-block), for each thread.

isTermPass - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Array of flags indicating terminated passes (valid or non-valid truncation points).

isTextLocked() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Text has been locked

isThisType(String, boolean) - Method in class loci.formats.DelegateReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.DelegateReader

isThisType(String) - Method in class loci.formats.FormatHandler

Checks if a file matches the type of this format handler.

isThisType(String, boolean) - Method in class loci.formats.FormatReader

Checks if a file matches the type of this format reader.

isThisType(byte[]) - Method in class loci.formats.FormatReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.FormatReader

isThisType(String) - Method in class loci.formats.FormatReader

isThisType(String) - Method in interface loci.formats.IFormatHandler

Checks if the given string is a valid filename for this file format.

isThisType(String, boolean) - Method in interface loci.formats.IFormatReader

Checks if the given file is a valid instance of this file format.

isThisType(byte[]) - Method in interface loci.formats.IFormatReader

Checks if the given block is a valid header for this file format.

isThisType(RandomAccessInputStream) - Method in interface loci.formats.IFormatReader

Checks if the given stream is a valid stream for this file format.

isThisType(String, boolean) - Method in class loci.formats.ImageReader

isThisType(byte[]) - Method in class loci.formats.ImageReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.ImageReader

isThisType(String) - Method in class loci.formats.ImageReader

isThisType(String) - Method in class loci.formats.ImageWriter

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AFIReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AliconaReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AmiraReader

isThisType(String, boolean) - Method in class loci.formats.in.AnalyzeReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AnalyzeReader

isThisType(String, boolean) - Method in class loci.formats.in.APLReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.APNGReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ARFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AVIReader

isThisType(String, boolean) - Method in class loci.formats.in.BDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadGelReader

isThisType(String, boolean) - Method in class loci.formats.in.BioRadReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadSCNReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BMPReader

isThisType(String, boolean) - Method in class loci.formats.in.BrukerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BrukerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BurleighReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CanonRawReader

isThisType(String, boolean) - Method in class loci.formats.in.CellH5Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CellH5Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CellomicsReader

isThisType(String, boolean) - Method in class loci.formats.in.CellVoyagerReader

isThisType(String, boolean) - Method in class loci.formats.in.CellWorxReader

isThisType(String, boolean) - Method in class loci.formats.in.DeltavisionReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DeltavisionReader

isThisType(String, boolean) - Method in class loci.formats.in.DicomReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DicomReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DNGReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.Ecat7Reader

isThisType(String, boolean) - Method in class loci.formats.in.FakeReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEIReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEITiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FlowSightReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FluoviewReader

isThisType(String, boolean) - Method in class loci.formats.in.FujiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FujiReader

isThisType(String, boolean) - Method in class loci.formats.in.FV1000Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FV1000Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanDM2Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GelReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GIFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HISReader

isThisType(String, boolean) - Method in class loci.formats.in.HitachiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HitachiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HRDGDFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.I2IReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IM3Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImaconReader

isThisType(String, boolean) - Method in class loci.formats.in.ImagicReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisHDFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IMODReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImprovisionTiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImspectorReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCell3000Reader

isThisType(String, boolean) - Method in class loci.formats.in.InCellReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCellReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.INRReader

isThisType(String, boolean) - Method in class loci.formats.in.InveonReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InveonReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPLabReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPWReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IvisionReader

isThisType(String, boolean) - Method in class loci.formats.in.JEOLReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JEOLReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPEG2000Reader

isThisType(String, boolean) - Method in class loci.formats.in.JPEGReader.DefaultJPEGReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPEGReader.DefaultJPEGReader

isThisType(String, boolean) - Method in class loci.formats.in.JPKReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPXReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KhorosReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KodakReader

isThisType(String, boolean) - Method in class loci.formats.in.L2DReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.L2DReader

isThisType(String, boolean) - Method in class loci.formats.in.LegacyND2Reader

isThisType(String, boolean) - Method in class loci.formats.in.LeicaReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LeicaReader

isThisType(String, boolean) - Method in class loci.formats.in.LeicaSCNReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LEOReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LIFReader

isThisType(String, boolean) - Method in class loci.formats.in.MetamorphReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphTiffReader

isThisType(String, boolean) - Method in class loci.formats.in.MIASReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MIASReader

isThisType(String, boolean) - Method in class loci.formats.in.MicromanagerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MicromanagerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MinimalTiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MNGReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MolecularImagingReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRCReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRWReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeND2Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeQTReader

isThisType(String, boolean) - Method in class loci.formats.in.NDPIReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NDPISReader

isThisType(String, boolean) - Method in class loci.formats.in.NiftiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NiftiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonElementsTiffReader

isThisType(String, boolean) - Method in class loci.formats.in.NikonReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonTiffReader

isThisType(String, boolean) - Method in class loci.formats.in.NRRDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NRRDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OBFReader

isThisType(String, boolean) - Method in class loci.formats.in.OMETiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMETiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMEXMLReader

isThisType(String, boolean) - Method in class loci.formats.in.OMEXMLReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabRawReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabReader

isThisType(String, boolean) - Method in class loci.formats.in.OperettaReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OperettaReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OxfordInstrumentsReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCIReader

isThisType(String, boolean) - Method in class loci.formats.in.PCORAWReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCORAWReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCXReader

isThisType(String, boolean) - Method in class loci.formats.in.PDSReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PDSReader

isThisType(String, boolean) - Method in class loci.formats.in.PerkinElmerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PGMReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PhotoshopTiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PQBinReader

isThisType(String, boolean) - Method in class loci.formats.in.PrairieReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PrairieReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PSDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PyramidTiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SBIGReader

isThisType(String, boolean) - Method in class loci.formats.in.ScanrReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScanrReader

isThisType(String, boolean) - Method in class loci.formats.in.ScreenReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScreenReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SEQReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SIFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SimplePCITiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SISReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlideBook6Reader

isThisType(String, boolean) - Method in class loci.formats.in.SlideBook6Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookTiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SMCameraReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SpiderReader

isThisType(String, boolean) - Method in class loci.formats.in.SVSReader

isThisType(String, boolean) - Method in class loci.formats.in.TCSReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TCSReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TextReader

isThisType(String, boolean) - Method in class loci.formats.in.TillVisionReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TopometrixReader

isThisType(String, boolean) - Method in class loci.formats.in.TrestleReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TrestleReader

isThisType(String, boolean) - Method in class loci.formats.in.UnisokuReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.UnisokuReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VarianFDFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VGSAMReader

isThisType(String, boolean) - Method in class loci.formats.in.VisitechReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityClippingReader

isThisType(String, boolean) - Method in class loci.formats.in.VolocityReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.WATOPReader

isThisType(String, boolean) - Method in class loci.formats.in.WlzReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissCZIReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissLMSReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissLSMReader

isThisType(String, boolean) - Method in class loci.formats.in.ZeissTIFFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader

isThisType(String, boolean) - Method in class loci.formats.ReaderWrapper

isThisType(byte[]) - Method in class loci.formats.ReaderWrapper

isThisType(RandomAccessInputStream) - Method in class loci.formats.ReaderWrapper

isThisType(String) - Method in class loci.formats.ReaderWrapper

isThisType(String) - Method in class loci.formats.WriterWrapper

isThisType(String, String[]) - Method in class loci.plugins.macro.LociFunctions

isThisTypeFast(String, String[]) - Method in class loci.plugins.macro.LociFunctions

isThumbnailSeries() - Method in class loci.formats.FileStitcher

isThumbnailSeries() - Method in class loci.formats.FormatReader

isThumbnailSeries() - Method in interface loci.formats.IFormatReader

Gets whether the current series is a lower resolution copy of a different series.

isThumbnailSeries() - Method in class loci.formats.ImageReader

isThumbnailSeries() - Method in class loci.formats.in.FilePatternReader

isThumbnailSeries() - Method in class loci.formats.ReaderWrapper

isTiff - Variable in class loci.formats.in.EPSReader

isTiff - Variable in class loci.formats.in.InCellReader.Image

isTiff - Variable in class loci.formats.in.PerkinElmerReader

Flag indicating that the image data is in TIFF format.

isTiffImageIO() - Static method in class loci.plugins.util.LociPrefs

isTileCompSpecified(int, int) - Method in class jj2000.j2k.ModuleSpec

Whether or not a tile-component specification has been defined

isTiled - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

isTiled() - Method in class loci.formats.tiff.IFD

isTileSpecified(int) - Method in class jj2000.j2k.ModuleSpec

Whether or not specifications have been entered for the given tile.

isTimeSeries() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets whether this Sequence should be considered a time series.

isTopDown() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Returns the value of the topDown parameter.

isTopDown - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

isTrue() - Method in class loci.poi.ddf.EscherBoolProperty

Whether this boolean property is true

isTruncMode - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

True if truncation mode is used.

isTruncMode - Variable in class jj2000.j2k.codestream.reader.PktDecoder

True if truncation mode is used.

isUnCompressedUnicode() - Method in class loci.poi.hssf.record.LabelRecord

is this uncompressed unicode (16bit)? Or just 8-bit compressed?

isUnCompressedUnicode() - Method in class loci.poi.hssf.record.StringRecord

is this uncompressed unicode (16bit)? Or just 8-bit compressed?

isUncompressedUnicode() - Method in class loci.poi.hssf.record.UnicodeString

isUngroupFiles() - Method in class loci.plugins.in.ImporterOptions

isUnicodeString(String) - Static method in class loci.poi.util.StringUtil

Checks to see if a given String needs to be represented as Unicode

isUnknown() - Method in class loci.poi.hssf.record.LineFormatRecord

book marks this as reserved = 0 but it seems to do something

isURL - Variable in class loci.common.Location

isUsed(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableReader

determine whether the block specified by index is used or not

isUsedFile(String) - Method in class loci.formats.FormatReader

Returns true if the given file name is in the used files list.

isUseExcel4Colors() - Method in class loci.poi.hssf.record.DataFormatRecord

set true to use excel 4 colors.

isUsing1904DateWindowing() - Method in class loci.poi.hssf.model.Workbook

Whether date windowing is based on 1/2/1904 or 1/1/1900.

isUsingPatternIds() - Method in class loci.formats.FileStitcher

Gets whether the reader is using file patterns for IDs.

isValid() - Method in class loci.formats.FilePattern

Gets whether the file pattern string is valid.

isValid() - Method in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

isValid() - Method in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

isValidExcelDate(double) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a double, checks if it is a valid Excel date.

isValidFile(File, File) - Method in class ome.specification.OmeValidator

Validate the specified file

isValidFile(File, StreamSource[]) - Method in class ome.specification.OmeValidator

Validate the specified file

isValidHeader() - Method in class loci.formats.tiff.TiffParser

Tests this stream to see if it represents a TIFF file.

isValidIndex(int) - Static method in class loci.poi.poifs.property.Property

determine whether the specified index is valid

isValidPlateName(String) - Method in class loci.formats.in.ScreenReader

isValidRange(int, int, int) - Static method in class loci.formats.tools.FakeImage

isValidWbmpType(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

isValidWellName(String) - Method in class loci.formats.in.ScreenReader

isValue() - Method in class loci.poi.hssf.record.BlankRecord

isValue() - Method in class loci.poi.hssf.record.BoolErrRecord

isValue() - Method in class loci.poi.hssf.record.FormulaRecord

isValue() - Method in class loci.poi.hssf.record.LabelRecord

isValue() - Method in class loci.poi.hssf.record.LabelSSTRecord

isValue() - Method in class loci.poi.hssf.record.NumberRecord

isValue() - Method in class loci.poi.hssf.record.Record

tells whether this type of record contains a value

isValue() - Method in class loci.poi.hssf.record.RKRecord

isValue() - Method in class loci.poi.hssf.record.SharedFormulaRecord

Register it in the ValueRecordsAggregate so it can go into the FormulaRecordAggregate

isValueAxisCrossing() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

set true to indicate axis crosses between categories and false to cross axis midway

isValuesInReverse() - Method in class loci.poi.hssf.record.ValueRangeRecord

values are reverses in graph

isVersionChecking() - Method in class loci.formats.Memoizer

Returns whether or not version checking is done based upon major/minor version numbers.

isVertical() - Method in class loci.poi.hssf.record.LegendRecord

vertical or horizontal legend (1 or 0 respectively).

isVertical() - Method in class loci.poi.hssf.record.TextRecord

true = text is vertical

isVerticalBorder() - Method in class loci.poi.hssf.record.DatRecord

has vertical border

isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFChildAnchor

isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

isViewBrowser() - Method in class loci.plugins.in.ImporterOptions

isViewHyperstack() - Method in class loci.plugins.in.ImporterOptions

isViewImage5D() - Method in class loci.plugins.in.ImporterOptions

isViewNone() - Method in class loci.plugins.in.ImporterOptions

isViewStandard() - Method in class loci.plugins.in.ImporterOptions

isViewView5D() - Method in class loci.plugins.in.ImporterOptions

isVirtual() - Method in class loci.plugins.in.ImporterOptions

isVisible() - Method in class loci.poi.hssf.usermodel.HSSFComment

Sets whether this comment is visible.

isWarning() - Method in class loci.common.StatusEvent

Returns whether or not this is a warning event.

IsWhite(char) - Method in class loci.poi.hssf.model.FormulaParser

Recognize White Space

isWindowless() - Method in class loci.plugins.in.ImporterOptions

isWindowless() - Method in class loci.plugins.in.ImportProcess

isWindowless(IFormatReader) - Static method in class loci.plugins.util.LociPrefs

Gets whether windowless mode should be used when opening this reader's currently initialized dataset.

isWritingEmpty - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

isWritingSequence - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Whether a sequence is being written.

isWritingSequence - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

isZipFile(String) - Static method in class loci.common.ZipHandle

Returns true if the given filename is a Zip file.

isZlib - Variable in class loci.formats.in.BaseZeissReader

italic - Variable in class loci.formats.in.BaseZeissReader.Shape

italic - Static variable in class loci.poi.hssf.record.FontRecord

ITEM - Static variable in class loci.formats.in.DicomReader

ITEM_DELIMINATION - Static variable in class loci.formats.in.DicomReader

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ConfigWindow

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ND2Widgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.PictWidgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.QTWidgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.SDTWidgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.TiffDelegateWidgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.in.MainDialog

Handles toggling of mutually exclusive options.

itemStateChanged(ItemEvent) - Method in class loci.plugins.in.SwapDialog

iterateIn(RandomAccessInputStream, Long) - Method in class loci.formats.in.NativeND2Reader

Function for iterating through ND2 metaAttributes

IterationRecord - Class in loci.poi.hssf.record

Title: Iteration Record

IterationRecord() - Constructor for class loci.poi.hssf.record.IterationRecord

IterationRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.IterationRecord

Constructs an Iteration record and sets its fields appropriately.

iterator() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

Returns an Iterator over the TIFF fields.

iterator() - Method in class loci.poi.hssf.model.WorkbookRecordList

iterator() - Method in class loci.poi.util.IntMapper

its - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

IvisionReader - Class in loci.formats.in

IvisionReader is the file format reader for IVision (.IPM) files.

IvisionReader() - Constructor for class loci.formats.in.IvisionReader

Constructs a new Ivision reader.

IvisionReader.IvisionHandler - Class in loci.formats.in

IvisionReader.IvisionHandler() - Constructor for class loci.formats.in.IvisionReader.IvisionHandler

iw - Variable in class loci.formats.in.GIFReader

Current image rectangle.

ix - Variable in class loci.formats.in.GIFReader

Current image rectangle.

iy - Variable in class loci.formats.in.GIFReader

Current image rectangle.

iYTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

J

j2kCodecOptions - Variable in class loci.formats.in.MinimalTiffReader

Codec options to use when decoding JPEG 2000 data.

J2KImageReader - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is the Java Image IO plugin reader for JPEG 2000 JP2 image file format.

J2KImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Constructs J2KImageReader from the provided ImageReaderSpi.

J2KImageReaderResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KImageReaderResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources

J2KImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

J2KImageReadParam - Class in com.sun.media.imageio.plugins.jpeg2000

A subclass of ImageReadParam for reading images in the JPEG 2000 format.

J2KImageReadParam() - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Constructs a default instance of J2KImageReadParam.

J2KImageReadParamJava - Class in com.sun.media.imageioimpl.plugins.jpeg2000

A subclass of ImageReadParam for reading images in the JPEG 2000 format.

J2KImageReadParamJava() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Constructs a default instance of J2KImageReadParamJava.

J2KImageReadParamJava(ImageReadParam) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

J2KImageWriteParam - Class in com.sun.media.imageio.plugins.jpeg2000

A subclass of ImageWriteParam for writing images in the JPEG 2000 format.

J2KImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Constructor which sets the Locale.

J2KImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Constructs a J2KImageWriteParam object with default values for all parameters.

J2KImageWriteParamJava - Class in com.sun.media.imageioimpl.plugins.jpeg2000

A subclass of ImageWriteParam for writing images in the JPEG 2000 format.

J2KImageWriteParamJava(RenderedImage, Locale) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructor to set locales.

J2KImageWriteParamJava(IIOImage, ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructor to set locales.

J2KImageWriteParamJava() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructs a J2KImageWriteParamJava object with default values for all parameters.

J2KImageWriteParamJava(RenderedImage) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructs a J2KImageWriteParamJava object with default values for all parameters.

J2KImageWriteParamJava(Raster) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructs a J2KImageWriteParamJava object with default values for all parameters.

J2KImageWriter - Class in com.sun.media.imageioimpl.plugins.jpeg2000

The Java Image IO plugin writer for encoding a RenderedImage into a JPEG 2000 part 1 file (JP2) format.

J2KImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

Constructs J2KImageWriter based on the provided ImageWriterSpi.

J2KImageWriterResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KImageWriterResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources

J2KImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

J2KMetadata - Class in com.sun.media.imageioimpl.plugins.jpeg2000

Metadata for the J2K plug-in.

J2KMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructor containing code shared by other constructors.

J2KMetadata(ImageInputStream, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

J2KMetadata(ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructs a default stream J2KMetadata object appropriate for the given write parameters.

J2KMetadata(ImageTypeSpecifier, ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructs a default image J2KMetadata object appropriate for the given image type and write parameters.

J2KMetadata(ColorModel, SampleModel, int, int, ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructs a default image J2KMetadata object appropriate for the given image type and write parameters.

J2KMetadataFormat - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

Constructs J2KMetadataFormat.

J2KMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources

J2KReadState - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KReadState(ImageInputStream, J2KImageReadParamJava, J2KMetadata, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Constructs J2KReadState.

J2KReadState(ImageInputStream, J2KImageReadParamJava, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Constructs J2KReadState.

J2KRenderedImage - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KRenderedImage(ImageInputStream, J2KImageReadParamJava, J2KMetadata, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

J2KRenderedImage(ImageInputStream, J2KImageReadParamJava, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

J2KRenderedImage(J2KReadState) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

j2krparam - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

j2krparam - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reference to the J2KImageReadParamJava instance

j2krparam - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The J2KImageReadParamJava instance of the decoder

JAIIIOService - Interface in loci.formats.services

Interface defining methods for reading data using JAI Image I/O.

JAIIIOServiceImpl - Class in loci.formats.services

Implementation of JAIIIOService for reading and writing JPEG-2000 data.

JAIIIOServiceImpl() - Constructor for class loci.formats.services.JAIIIOServiceImpl

Default constructor.

JavaWriter - Class in loci.formats.out

JavaWriter is the file format writer for Java source code.

JavaWriter() - Constructor for class loci.formats.out.JavaWriter

JAXP_SCHEMA_LANGUAGE - Static variable in class ome.specification.OmeValidator

Path the schema language.

JAXP_SCHEMA_LANGUAGE - Static variable in class ome.specification.XMLWriter

The schema language.

JAXP_SCHEMA_SOURCE - Static variable in class ome.specification.OmeValidator

The source.

JEOLReader - Class in loci.formats.in

JEOLReader is the file format reader for JEOL files.

JEOLReader() - Constructor for class loci.formats.in.JEOLReader

Constructs a new JEOL reader.

jet_version - Variable in class mdbtools.libmdb.MdbFile

jhdf - Variable in class loci.formats.in.CellH5Reader

jhdf - Variable in class loci.formats.out.CellH5Writer

JHDFService - Interface in loci.formats.services

Utility class for working with NetCDF/HDF files.

JHDFServiceImpl - Class in loci.formats.services

Utility class for working with HDF files.

JHDFServiceImpl() - Constructor for class loci.formats.services.JHDFServiceImpl

Default constructor.

jj2000.j2k - package jj2000.j2k

jj2000.j2k.codestream - package jj2000.j2k.codestream

jj2000.j2k.codestream.reader - package jj2000.j2k.codestream.reader

jj2000.j2k.codestream.writer - package jj2000.j2k.codestream.writer

jj2000.j2k.decoder - package jj2000.j2k.decoder

jj2000.j2k.entropy - package jj2000.j2k.entropy

jj2000.j2k.entropy.decoder - package jj2000.j2k.entropy.decoder

jj2000.j2k.entropy.encoder - package jj2000.j2k.entropy.encoder

jj2000.j2k.fileformat - package jj2000.j2k.fileformat

jj2000.j2k.fileformat.reader - package jj2000.j2k.fileformat.reader

jj2000.j2k.fileformat.writer - package jj2000.j2k.fileformat.writer

jj2000.j2k.image - package jj2000.j2k.image

jj2000.j2k.image.forwcomptransf - package jj2000.j2k.image.forwcomptransf

jj2000.j2k.image.input - package jj2000.j2k.image.input

jj2000.j2k.image.invcomptransf - package jj2000.j2k.image.invcomptransf

jj2000.j2k.io - package jj2000.j2k.io

jj2000.j2k.quantization - package jj2000.j2k.quantization

jj2000.j2k.quantization.dequantizer - package jj2000.j2k.quantization.dequantizer

jj2000.j2k.quantization.quantizer - package jj2000.j2k.quantization.quantizer

jj2000.j2k.roi - package jj2000.j2k.roi

jj2000.j2k.roi.encoder - package jj2000.j2k.roi.encoder

jj2000.j2k.util - package jj2000.j2k.util

jj2000.j2k.wavelet - package jj2000.j2k.wavelet

jj2000.j2k.wavelet.analysis - package jj2000.j2k.wavelet.analysis

jj2000.j2k.wavelet.synthesis - package jj2000.j2k.wavelet.synthesis

JJ2KExceptionHandler - Class in jj2000.j2k

This class handles exceptions.

JJ2KExceptionHandler() - Constructor for class jj2000.j2k.JJ2KExceptionHandler

JJ2KInfo - Class in jj2000.j2k

This class holds general JJ2000 information, such as the version number, copyright, contact address, etc.

JJ2KInfo() - Constructor for class jj2000.j2k.JJ2KInfo

join(AbstractEscherHolderRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Big drawing group records are split but it's easier to deal with them as a whole group so we need to join them together.

Join - Class in mdbtools.dbengine.sql

Join() - Constructor for class mdbtools.dbengine.sql.Join

JP2_HEADER_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

JP2_SIGNATURE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

Main boxes

JPEG - Static variable in class loci.formats.in.AVIReader

JPEG - Static variable in class loci.formats.in.CellSensReader

jpeg - Variable in class loci.formats.in.CellSensReader

jpeg - Variable in class loci.formats.in.HamamatsuVMSReader

JPEG - Static variable in class loci.formats.in.ZeissCZIReader

JPEG2000BoxType - Enum in loci.formats.codec

An enumeration of JPEG 2000 box types.

JPEG2000BoxType(int, String) - Constructor for enum loci.formats.codec.JPEG2000BoxType

Default constructor.

JPEG2000Codec - Class in loci.formats.codec

This class implements JPEG 2000 compression and decompression.

JPEG2000Codec() - Constructor for class loci.formats.codec.JPEG2000Codec

JPEG2000CodecOptions - Class in loci.formats.codec

Options for compressing and decompressing JPEG-2000 data.

JPEG2000CodecOptions() - Constructor for class loci.formats.codec.JPEG2000CodecOptions

Creates a new instance.

JPEG2000CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.JPEG2000CodecOptions

Creates a new instance with options.

Jpeg2000GrindTest - Class in loci.tests.testng

Test grinding in a multi-threaded environment a JPEG-2000 encoded TIFF.

Jpeg2000GrindTest() - Constructor for class loci.tests.testng.Jpeg2000GrindTest

Jpeg2000GrindTest.ChannelRunnable - Class in loci.tests.testng

Jpeg2000GrindTest.ChannelRunnable(int) - Constructor for class loci.tests.testng.Jpeg2000GrindTest.ChannelRunnable

Jpeg2000GrindTest.TileRunnable - Class in loci.tests.testng

Jpeg2000GrindTest.TileRunnable(TiffWriter, int, int, int, int, int, int, int, int) - Constructor for class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

JPEG2000MetadataParser - Class in loci.formats.in

A parser for JPEG 2000 metadata.

JPEG2000MetadataParser(RandomAccessInputStream) - Constructor for class loci.formats.in.JPEG2000MetadataParser

Constructs a new JPEG2000MetadataParser.

JPEG2000MetadataParser(RandomAccessInputStream, long) - Constructor for class loci.formats.in.JPEG2000MetadataParser

Constructs a new JPEG2000MetadataParser.

JPEG2000Reader - Class in loci.formats.in

JPEG2000Reader is the file format reader for JPEG-2000 images.

JPEG2000Reader() - Constructor for class loci.formats.in.JPEG2000Reader

Constructs a new JPEG2000Reader.

JPEG2000SegmentMarker - Enum in loci.formats.codec

An enumeration of JPEG 2000 segment markers.

JPEG2000SegmentMarker(int, String) - Constructor for enum loci.formats.codec.JPEG2000SegmentMarker

Default constructor.

JPEG2000Writer - Class in loci.formats.out

JPEG2000Writer is the file format writer for JPEG2000 files.

JPEG2000Writer() - Constructor for class loci.formats.out.JPEG2000Writer

Creates a new instance.

JPEG_2000 - Static variable in class loci.formats.in.CellSensReader

JPEG_AC_TABLES - Static variable in class loci.formats.tiff.IFD

JPEG_DC_TABLES - Static variable in class loci.formats.tiff.IFD

JPEG_INTERCHANGE_FORMAT - Static variable in class loci.formats.tiff.IFD

JPEG_INTERCHANGE_FORMAT_LENGTH - Static variable in class loci.formats.tiff.IFD

JPEG_LOSSLESS_PREDICTORS - Static variable in class loci.formats.tiff.IFD

JPEG_POINT_TRANSFORMS - Static variable in class loci.formats.tiff.IFD

JPEG_PROC - Static variable in class loci.formats.tiff.IFD

JPEG_PROC_BASELINE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "JPEGProc" tag.

JPEG_PROC_LOSSLESS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "JPEGProc" tag.

JPEG_Q_TABLES - Static variable in class loci.formats.tiff.IFD

JPEG_RESTART_INTERVAL - Static variable in class loci.formats.tiff.IFD

JPEG_TABLES - Static variable in class loci.formats.tiff.IFD

jpegBuf - Variable in class org.libjpegturbo.turbojpeg.TJDecompressor

jpegBufSize - Variable in class org.libjpegturbo.turbojpeg.TJDecompressor

JPEGCodec - Class in loci.formats.codec

This class implements JPEG compression and decompression.

JPEGCodec() - Constructor for class loci.formats.codec.JPEGCodec

jpegHeight - Variable in class org.libjpegturbo.turbojpeg.TJDecompressor

JPEGImageMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

jpegOffsets - Variable in class loci.formats.in.PictReader

JPEGParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

ImageWriteParam for JPEG writer.

JPEGParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

jpegQuality - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

JPEGReader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

JPEGReader - Class in loci.formats.in

JPEGReader is the file format reader for JPEG images.

JPEGReader() - Constructor for class loci.formats.in.JPEGReader

Constructs a new JPEGReader.

JPEGReader.DefaultJPEGReader - Class in loci.formats.in

JPEGReader.DefaultJPEGReader() - Constructor for class loci.formats.in.JPEGReader.DefaultJPEGReader

JPEGStreamMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Stream metadata equivalent to a tables-only stream such as in the JPEGTables.

JPEGStreamOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

jpegSubsamp - Variable in class org.libjpegturbo.turbojpeg.TJDecompressor

JPEGTileDecoder - Class in loci.formats.codec

JPEGTileDecoder() - Constructor for class loci.formats.codec.JPEGTileDecoder

JPEGTileDecoder.TileCache - Class in loci.formats.codec

JPEGTileDecoder.TileCache(int, int) - Constructor for class loci.formats.codec.JPEGTileDecoder.TileCache

JPEGTileDecoder.TileConsumer - Class in loci.formats.codec

JPEGTileDecoder.TileConsumer(ImageProducer) - Constructor for class loci.formats.codec.JPEGTileDecoder.TileConsumer

JPEGTileDecoder.TileConsumer(ImageProducer, int, int) - Constructor for class loci.formats.codec.JPEGTileDecoder.TileConsumer

JPEGTurboService - Interface in loci.formats.services

JPEGTurboServiceImpl - Class in loci.formats.services

Based upon the NDPI to OME-TIFF converter by Matthias Baldauf: http://matthias-baldauf.at/software/ndpi_converter/

JPEGTurboServiceImpl() - Constructor for class loci.formats.services.JPEGTurboServiceImpl

jpegWidth - Variable in class org.libjpegturbo.turbojpeg.TJDecompressor

JPEGWriter - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

The JPEG writer.

JPEGWriter - Class in loci.formats.out

JPEGWriter is the file format writer for JPEG files.

JPEGWriter() - Constructor for class loci.formats.out.JPEGWriter

JPEGXR - Static variable in class loci.formats.in.ZeissCZIReader

JPG - Static variable in class loci.formats.codec.LosslessJPEGCodec

JPKReader - Class in loci.formats.in

JPKReader is the file format reader for JPK Instruments files.

JPKReader() - Constructor for class loci.formats.in.JPKReader

Constructs a new JPK reader.

JPXReader - Class in loci.formats.in

JPXReader is the file format reader for JPX (3D JPEG-2000) images.

JPXReader() - Constructor for class loci.formats.in.JPXReader

Constructs a new JPX Reader.

JUSTIFY - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

jvm64Bit - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating 64-bit JVM (does not support QTJava).

JVM_64BIT_MSG - Static variable in class loci.formats.gui.LegacyQTTools

JXRException - Exception in ome.jxr

JXRException is thrown when an error is encountered during the broadly understood parsing of a JPEG XR image file.

JXRException() - Constructor for exception ome.jxr.JXRException

JXRException(String) - Constructor for exception ome.jxr.JXRException

JXRException(String, Throwable) - Constructor for exception ome.jxr.JXRException

JXRException(Throwable) - Constructor for exception ome.jxr.JXRException

JXRRational - Class in ome.jxr.ifd

Represents the native type implementation of the JPEG XR IFDEntryType.URATIONAL and IFDEntryType.SRATIONAL IFD entry types.

JXRRational(int, int) - Constructor for class ome.jxr.ifd.JXRRational

JXRReader - Class in ome.jxr

Reader for the JPEG XR image file format.

JXRReader(String) - Constructor for class ome.jxr.JXRReader

JXRReader(RandomAccessInputStream) - Constructor for class ome.jxr.JXRReader

K

K - Static variable in class ome.units.UNITS

KBAR - Static variable in class ome.units.UNITS

KELVIN - Static variable in class ome.units.UNITS

key - Variable in class loci.formats.in.BaseZeissReader.Layer

key - Variable in class loci.formats.in.BioRadSCNReader.SCNHandler

key - Variable in class loci.formats.in.FEITiffReader.FEIHandler

key - Variable in class loci.formats.in.ImaconReader.ImaconHandler

key - Variable in class loci.formats.in.IvisionReader.IvisionHandler

key - Variable in class loci.formats.in.ScanrReader.ScanrHandler

key - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling

key - Variable in class loci.formats.in.ZeissTIFFHandler.Tag

key - Variable in class loci.formats.meta.OriginalMetadataAnnotation

key - Variable in class loci.plugins.prefs.Option

Key name for ImageJ preferences file.

KEY - Static variable in class loci.tests.testng.ThreadNameBasedDiscriminator

KEY_AUTOSCALE - Static variable in class loci.plugins.in.ImporterOptions

KEY_COLOR_MODE - Static variable in class loci.plugins.in.ImporterOptions

KEY_CONCATENATE - Static variable in class loci.plugins.in.ImporterOptions

KEY_CROP - Static variable in class loci.plugins.in.ImporterOptions

KEY_FIRST - Static variable in class loci.plugins.in.ImporterOptions

KEY_FORCE_THUMBS - Static variable in class loci.plugins.in.ImporterOptions

KEY_GROUP_FILES - Static variable in class loci.plugins.in.ImporterOptions

KEY_ID - Static variable in class loci.plugins.in.ImporterOptions

KEY_LOCATION - Static variable in class loci.plugins.in.ImporterOptions

KEY_MUST_GROUP - Static variable in class loci.plugins.in.ImporterOptions

KEY_OPEN_ALL_SERIES - Static variable in class loci.plugins.in.ImporterOptions

KEY_PREFIX - Static variable in class loci.plugins.prefs.Option

Prefix to use for all plugins preferences.

KEY_QUIET - Static variable in class loci.plugins.in.ImporterOptions

KEY_SHOW_METADATA - Static variable in class loci.plugins.in.ImporterOptions

KEY_SHOW_OME_XML - Static variable in class loci.plugins.in.ImporterOptions

KEY_SHOW_ROIS - Static variable in class loci.plugins.in.ImporterOptions

KEY_SPECIFY_RANGES - Static variable in class loci.plugins.in.ImporterOptions

KEY_SPLIT_C - Static variable in class loci.plugins.in.ImporterOptions

KEY_SPLIT_T - Static variable in class loci.plugins.in.ImporterOptions

KEY_SPLIT_Z - Static variable in class loci.plugins.in.ImporterOptions

KEY_STACK_FORMAT - Static variable in class loci.plugins.in.ImporterOptions

KEY_STACK_ORDER - Static variable in class loci.plugins.in.ImporterOptions

KEY_STITCH_TILES - Static variable in class loci.plugins.in.ImporterOptions

KEY_SWAP_DIMS - Static variable in class loci.plugins.in.ImporterOptions

KEY_UNGROUP_FILES - Static variable in class loci.plugins.in.ImporterOptions

KEY_UPGRADE_CHECK - Static variable in class loci.plugins.in.ImporterOptions

KEY_VIRTUAL - Static variable in class loci.plugins.in.ImporterOptions

KEY_WINDOWLESS - Static variable in class loci.plugins.in.ImporterOptions

keyid - Variable in class loci.formats.in.BaseZeissReader.Tag

keyPressed(KeyEvent) - Method in class loci.formats.gui.ImageViewer

Handles key presses.

keyReleased(KeyEvent) - Method in class loci.formats.gui.ImageViewer

keys(Hashtable<String, Object>) - Static method in class loci.formats.MetadataTools

Gets a sorted list of keys from the given hashtable.

keySet() - Method in class loci.poi.util.BinaryTree

Returns a set view of the keys contained in this map.

keySetByValue() - Method in class loci.poi.util.BinaryTree

Returns a set view of the keys contained in this map.

keyTyped(KeyEvent) - Method in class loci.formats.gui.ImageViewer

KH - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the high-pass subband normalization factor

KH - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the high-pass subband normalization factor

KHOROS_MAGIC_BYTES - Static variable in class loci.formats.in.KhorosReader

KhorosReader - Class in loci.formats.in

Reader for Khoros XV files.

KhorosReader() - Constructor for class loci.formats.in.KhorosReader

Constructs a new Khoros reader.

KHZ - Static variable in class ome.units.UNITS

KILO(Unit<T>) - Static method in class ome.units.UNITS

kind - Variable in class loci.formats.out.ImageIOWriter

KINETIC_CYCLE_TIME - Static variable in class loci.formats.in.FluoviewReader

kkd_pg - Variable in class mdbtools.libmdb.MdbCatalogEntry

kkd_rowid - Variable in class mdbtools.libmdb.MdbCatalogEntry

KL - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the low-pass subband normalization factor

KL - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the low-pass subband normalization factor

KM - Static variable in class ome.units.UNITS

KNOWN_VERSIONS - Static variable in class loci.formats.in.LiFlimReader

KodakReader - Class in loci.formats.in

KodakReader is the file format reader for Kodak Molecular Imaging .bip files.

KodakReader() - Constructor for class loci.formats.in.KodakReader

Constructs a new Kodak reader.

KPA - Static variable in class ome.units.UNITS

kryo - Variable in class loci.formats.Memoizer.KryoDeser

KS - Static variable in class ome.units.UNITS

KV - Static variable in class ome.units.UNITS

KW - Static variable in class ome.units.UNITS

L

L2DReader - Class in loci.formats.in

L2DReader is the file format reader for Li-Cor L2D datasets.

L2DReader() - Constructor for class loci.formats.in.L2DReader

Construct a new L2D reader.

l2Norm - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The L2-norm of the synthesis basis waveform of this subband, applicable to "leafs" only.

label - Variable in class loci.plugins.prefs.Option

Label describing the option, for use with ImageJ dialogs.

Label - Class in ome.xml.model

Label() - Constructor for class ome.xml.model.Label

Default constructor.

Label(Element, OMEModel) - Constructor for class ome.xml.model.Label

Constructs Label recursively from an XML DOM tree.

Label(Label) - Constructor for class ome.xml.model.Label

Copy constructor.

LABEL_X - Static variable in class loci.formats.in.TextReader

LABEL_Y - Static variable in class loci.formats.in.TextReader

labelAsPercentage - Variable in class loci.poi.hssf.record.SeriesLabelsRecord

LabelRecord - Class in loci.poi.hssf.record

Label Record - read only support for strings stored directly in the cell..

LabelRecord() - Constructor for class loci.poi.hssf.record.LabelRecord

Creates new LabelRecord

LabelRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LabelRecord

Constructs an Label record and sets its fields appropriately.

labels - Variable in class loci.formats.in.ICSReader

Dimensional reordering for lifetime data

labels - Variable in class loci.formats.Modulo

labels - Variable in class loci.plugins.config.FlexWidgets

labels - Variable in class loci.plugins.config.FormatEntry

labels - Variable in class loci.plugins.config.ND2Widgets

labels - Variable in class loci.plugins.config.PictWidgets

labels - Variable in class loci.plugins.config.QTWidgets

labels - Variable in class loci.plugins.config.SDTWidgets

labels - Variable in class loci.plugins.config.TiffDelegateWidgets

LabelSSTRecord - Class in loci.poi.hssf.record

Title: Label SST Record

LabelSSTRecord() - Constructor for class loci.poi.hssf.record.LabelSSTRecord

LabelSSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LabelSSTRecord

Constructs an LabelSST record and sets its fields appropriately.

LAMBDA_INCREMENT - Static variable in class loci.formats.in.CellSensReader

LAMBDA_START - Static variable in class loci.formats.in.CellSensReader

LAMBDA_VALUE - Static variable in class loci.formats.in.CellSensReader

landscape - Static variable in class loci.poi.hssf.record.PrintSetupRecord

largePalette - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

Laser - Class in ome.xml.model

Laser() - Constructor for class ome.xml.model.Laser

Default constructor.

Laser(Element, OMEModel) - Constructor for class ome.xml.model.Laser

Constructs Laser recursively from an XML DOM tree.

Laser(Laser) - Constructor for class ome.xml.model.Laser

Copy constructor.

LASER_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader

LASER_MEDIUM - Static variable in class ome.specification.XMLMockObjects

The default type of a laser.

LASER_NAME - Static variable in class loci.formats.in.ZeissLSMReader

LASER_POWER - Static variable in class loci.formats.in.ZeissLSMReader

LASER_SCAN_CONFOCAL - Static variable in class loci.formats.in.LegacyND2Reader

LASER_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of a laser.

laserActive - Variable in class loci.formats.in.LIFReader

laserCount - Variable in class loci.formats.in.LeicaHandler

laserFrap - Variable in class loci.formats.in.LIFReader

laserIDs - Variable in class loci.formats.in.NikonTiffReader

laserIntensity - Variable in class loci.formats.in.LIFReader

LaserMedium - Enum in ome.xml.model.enums

LaserMedium(String) - Constructor for enum ome.xml.model.enums.LaserMedium

laserMedium - Variable in class ome.xml.model.Laser

LaserMediumEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for LaserMedium.

LaserMediumEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LaserMediumEnumHandler

lasers - Variable in class loci.formats.in.LeicaHandler

lasers - Variable in class ome.xml.model.Pump

LaserType - Enum in ome.xml.model.enums

LaserType(String) - Constructor for enum ome.xml.model.enums.LaserType

LaserTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for LaserType.

LaserTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LaserTypeEnumHandler

laserWavelength - Variable in class loci.formats.in.LIFReader

last - Variable in class loci.common.CBZip2InputStream

Index of the last char in the block, so the block size == last + 1.

lastcell - Variable in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

lastChangingElement - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

lastChannel - Variable in class loci.formats.in.BioRadReader

lastChannel - Variable in class loci.formats.in.CellH5Reader

lastChannel - Variable in class loci.formats.in.FV1000Reader

lastChannel - Variable in class loci.formats.in.ImarisHDFReader

lastChannel - Variable in class loci.formats.in.LIFReader

lastChannel - Variable in class loci.formats.in.NativeND2Reader

lastCodeOffset - Variable in class loci.formats.in.AmiraReader.HxRLE

lastDispose - Variable in class loci.formats.in.GIFReader

lastEOF - Variable in class loci.poi.hssf.eventmodel.ModelFactory

lastFile - Variable in class loci.formats.in.CellWorxReader

lastFile - Variable in class loci.formats.in.ImprovisionTiffReader

lastFile - Variable in class loci.formats.in.SlidebookTiffReader

lastId - Variable in class loci.formats.gui.PreviewPane

Last ID loaded.

lastIFD - Variable in class loci.formats.in.LeicaSCNReader.Pixels

lastIFD - Variable in class loci.tests.testng.Jpeg2000GrindTest

Last IFD we used during a tile write operation.

lastImage - Variable in class loci.formats.ChannelSeparator

Last image opened.

lastImage - Variable in class loci.formats.in.APNGReader

lastImage - Variable in class loci.formats.in.AVIReader

lastImageHeight - Variable in class loci.formats.ChannelSeparator

Height of last image opened.

lastImageIndex - Variable in class loci.formats.ChannelSeparator

Index of last image opened.

lastImageIndex - Variable in class loci.formats.in.APNGReader

lastImageNo - Variable in class loci.formats.in.AVIReader

lastImageRow - Variable in class loci.formats.in.APNGReader

lastImageSeries - Variable in class loci.formats.ChannelSeparator

Series of last image opened.

lastImageWidth - Variable in class loci.formats.ChannelSeparator

Width of last image opened.

lastImageX - Variable in class loci.formats.ChannelSeparator

X index of last image opened.

lastImageY - Variable in class loci.formats.ChannelSeparator

Y index of last image opened.

lastIndex - Variable in class loci.formats.in.DNGReader

lastIndex - Variable in class loci.formats.in.NikonReader

lastIndexOf(double) - Method in class loci.poi.util.DoubleList

Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.

lastIndexOf(int) - Method in class loci.poi.util.IntList

Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.

lastIndexOf(short) - Method in class loci.poi.util.ShortList

Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.

lastLengthPos - Variable in class loci.poi.hssf.record.UnicodeString.UnicodeRecordStats

lastm - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The vertical index of the last code-block "sent" in the current subband in each component.

lastModified() - Method in class loci.common.Location

Return the last modification time of this file, in milliseconds since the UNIX epoch.

lastn - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The horizontal index of the last code-block "sent" in the current subband in each component.

lastName - Variable in class ome.xml.model.Experimenter

lastPlane - Variable in class loci.formats.in.BaseZeissReader

lastPlane - Variable in class loci.formats.in.DNGReader

lastPlane - Variable in class loci.formats.in.JPXReader

lastPlane - Variable in class loci.formats.in.LeicaReader

lastPlane - Variable in class loci.formats.in.MinimalTiffReader

lastPlane - Variable in class loci.formats.in.NikonReader

lastPlane - Variable in class loci.formats.in.OMETiffReader

lastPlane - Variable in class loci.formats.in.OpenlabReader

lastPlane - Variable in class loci.formats.in.TCSReader

lastPlane - Variable in class loci.formats.out.ICSWriter

lastPlane - Variable in class loci.formats.out.V3DrawWriter

lastPos - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

lastPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

lastReader - Variable in class loci.formats.in.CellWorxReader

lastRegion - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

lastrow - Variable in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

lastRow - Variable in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

lastrow - Variable in class loci.poi.hssf.usermodel.HSSFSheet

lastSegmentLength - Variable in class com.sun.media.imageio.stream.SectorStreamSegmentMapper

lastSeries - Variable in class loci.formats.in.BrukerReader

lastSeries - Variable in class loci.formats.in.JPEG2000Reader

lastSeries - Variable in class loci.formats.in.JPXReader

lastSeriesPlane - Variable in class loci.formats.in.JPEG2000Reader

lastSeriesPlane - Variable in class loci.formats.in.JPXReader

lastTile - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

LATEST_VERSION - Static variable in class loci.formats.services.OMEXMLServiceImpl

Latest OME-XML version namespace.

LATITUDE_REF_NORTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLatitudeRef" and "GPSDestLatitudeRef" tags.

LATITUDE_REF_SOUTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLatitudeRef" and "GPSDestLatitudeRef" tags.

layer_count - Variable in class loci.formats.in.ZeissTIFFHandler

LAYER_INFO_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

LAYER_SELECTION - Static variable in class loci.formats.in.CellSensReader

LAYER_SELECTION_INDEX - Static variable in class loci.formats.in.CellSensReader

LAYER_XY_FIXED - Static variable in class loci.formats.in.CellSensReader

layerIdx - Variable in class jj2000.j2k.codestream.reader.PktInfo

The layer associated with the current code-block in this packet.

layerNames - Variable in class loci.formats.in.PhotoshopTiffReader

layerOffset - Variable in class loci.formats.in.PhotoshopTiffReader

layers - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Explicitly specifies the codestream layer formation parameters.

layers - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Array containing the layers information.

layers - Variable in class loci.formats.in.BaseZeissReader

layers - Variable in class loci.formats.in.ZeissTIFFHandler

LayersInfo - Class in jj2000.j2k.entropy.encoder

This class stores the specification of a layer distribution in the bit stream.

LayersInfo(float) - Constructor for class jj2000.j2k.entropy.encoder.LayersInfo

Creates a new LayersInfo object.

LAYOUT_KEYS - Static variable in class loci.formats.in.ICSReader

LAYOUT_TABLE - Static variable in class loci.formats.in.LiFlimReader

lbbuf - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The body buffer of the last encoded packet

lblen - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The body length of the last encoded packet

lblock - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Lblock value used to read code size information in each packet head: 1st dim: component index. 2nd dim: resolution level index. 3rd dim: subband index. 4th/5th dim: code-block index (vert.

lblock - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The base number of bits for sending code-block length information (referred as Lblock in the JPEG 2000 standard).

lblockNo - Variable in class loci.formats.in.SDTInfo

Long blockNo - see remarks below.

lcm(int, int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Least Common Multiple (LCM) of two strictly positive integer numbers.

lcm(int[]) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Least Common Multiple (LCM) of several positive integer numbers.

lcoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

lcod - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

lcom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM

lcrg - Variable in class jj2000.j2k.codestream.HeaderInfo.CRG

lcs - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The length calculation specifications

LCS_CALIBRATED_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

LCS_sRGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

LCS_WINDOWS_COLOR_SPACE - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

lcType - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The length calculation type to use in compression

Leader - Class in ome.xml.model

Leader() - Constructor for class ome.xml.model.Leader

Default constructor.

Leader(Element, OMEModel) - Constructor for class ome.xml.model.Leader

Constructs Leader recursively from an XML DOM tree.

Leader(Leader) - Constructor for class ome.xml.model.Leader

Copy constructor.

leaders - Variable in class ome.xml.model.ExperimenterGroup

leafCounter - Variable in class loci.formats.codec.HuffmanCodec

leafValue - Variable in class loci.formats.codec.HuffmanCodec.Decoder

LEAST_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Least Dots

leastNode(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

find the least node from a given node.

LEAVES_OFFSET - Static variable in class loci.formats.codec.HuffmanCodec

LEFT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

left - Variable in class loci.poi.hssf.usermodel.HSSFFooter

left - Variable in class loci.poi.hssf.usermodel.HSSFHeader

left - Variable in class mdbtools.dbengine.sql.Condition

left - Variable in class mdbtools.dbengine.sql.Equation

left - Variable in class mdbtools.dbengine.sql.Join

leftColumn - Variable in class loci.poi.hssf.util.PaneInformation

LeftMargin - Static variable in class loci.poi.hssf.model.Sheet

LeftMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

leftMargin - Variable in class ome.jxr.parser.DatastreamParser

LeftMarginRecord - Class in loci.poi.hssf.record

Record for the left margin.

LeftMarginRecord() - Constructor for class loci.poi.hssf.record.LeftMarginRecord

LeftMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LeftMarginRecord

Constructs a LeftMargin record and sets its fields appropriately.

lefttoright - Static variable in class loci.poi.hssf.record.PrintSetupRecord

legacy - Variable in class loci.formats.in.PictReader

legacy - Variable in class loci.formats.out.QTWriter

Legacy QuickTime writer.

LEGACY_AC_PATH - Static variable in class ome.specification.SchemaResolver

LEGACY_AM_PATH - Static variable in class ome.specification.SchemaResolver

LEGACY_BF_PATH - Static variable in class ome.specification.SchemaResolver

LEGACY_CA_PATH - Static variable in class ome.specification.SchemaResolver

LEGACY_CL_PATH - Static variable in class ome.specification.SchemaResolver

LEGACY_DH_PATH - Static variable in class ome.specification.SchemaResolver

LEGACY_ML_PATH - Static variable in class ome.specification.SchemaResolver

LEGACY_OM_PATH - Static variable in class ome.specification.SchemaResolver

LEGACY_SEARCH_PATH - Static variable in class ome.specification.SchemaResolver

LEGACY_ST_PATH - Static variable in class ome.specification.SchemaResolver

LegacyND2Reader - Class in loci.formats.in

LegacyND2Reader is a file format reader for Nikon ND2 files that uses the Nikon ND2 SDK - it is only usable on Windows machines.

LegacyND2Reader() - Constructor for class loci.formats.in.LegacyND2Reader

LegacyQTReader - Class in loci.formats.in

LegacyQTReader is a file format reader for QuickTime movie files.

LegacyQTReader() - Constructor for class loci.formats.in.LegacyQTReader

Constructs a new QT reader.

LegacyQTTools - Class in loci.formats.gui

Utility class for working with QuickTime for Java.

LegacyQTTools() - Constructor for class loci.formats.gui.LegacyQTTools

LegacyQTWriter - Class in loci.formats.out

LegacyQTWriter is a file format writer for QuickTime movies.

LegacyQTWriter() - Constructor for class loci.formats.out.LegacyQTWriter

legacyReader - Variable in class loci.formats.DelegateReader

Legacy reader.

legacyReaderInitialized - Variable in class loci.formats.DelegateReader

Flag indicating that the legacy reader was successfully initialized.

LEGAL_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

LegendRecord - Class in loci.poi.hssf.record

Defines a legend for a chart.

LegendRecord() - Constructor for class loci.poi.hssf.record.LegendRecord

LegendRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LegendRecord

Constructs a Legend record and sets its fields appropriately.

LEI_SUFFIX - Static variable in class loci.formats.in.LeicaReader

LEICA_MAGIC_TAG - Static variable in class loci.formats.in.LeicaReader

All Leica TIFFs have this tag.

LeicaHandler - Class in loci.formats.in

SAX handler for parsing XML in Leica LIF and Leica TCS files.

LeicaHandler(MetadataStore, MetadataLevel) - Constructor for class loci.formats.in.LeicaHandler

LeicaHandler.Channel - Class in loci.formats.in

LeicaHandler.Channel() - Constructor for class loci.formats.in.LeicaHandler.Channel

LeicaHandler.Detector - Class in loci.formats.in

LeicaHandler.Detector() - Constructor for class loci.formats.in.LeicaHandler.Detector

LeicaHandler.Laser - Class in loci.formats.in

LeicaHandler.Laser() - Constructor for class loci.formats.in.LeicaHandler.Laser

LeicaHandler.MultiBand - Class in loci.formats.in

LeicaHandler.MultiBand() - Constructor for class loci.formats.in.LeicaHandler.MultiBand

LeicaHandler.ROI - Class in loci.formats.in

LeicaHandler.ROI() - Constructor for class loci.formats.in.LeicaHandler.ROI

LeicaReader - Class in loci.formats.in

LeicaReader is the file format reader for Leica files.

LeicaReader() - Constructor for class loci.formats.in.LeicaReader

Constructs a new Leica reader.

LeicaReader.Detector - Class in loci.formats.in

LeicaReader.Detector() - Constructor for class loci.formats.in.LeicaReader.Detector

LeicaSCNReader - Class in loci.formats.in

LeicaSCNReader is the file format reader for Leica SCN TIFF files.

LeicaSCNReader() - Constructor for class loci.formats.in.LeicaSCNReader

Constructs a new LeicaSCN reader.

LeicaSCNReader.Dimension - Class in loci.formats.in

LeicaSCNReader.Dimension(Attributes) - Constructor for class loci.formats.in.LeicaSCNReader.Dimension

LeicaSCNReader.Image - Class in loci.formats.in

LeicaSCNReader.Image(Attributes) - Constructor for class loci.formats.in.LeicaSCNReader.Image

LeicaSCNReader.ImageCollection - Class in loci.formats.in

LeicaSCNReader.ImageCollection(Attributes) - Constructor for class loci.formats.in.LeicaSCNReader.ImageCollection

LeicaSCNReader.LeicaSCNHandler - Class in loci.formats.in

SAX handler for parsing XML in Leica SCN files.

LeicaSCNReader.LeicaSCNHandler() - Constructor for class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

LeicaSCNReader.Pixels - Class in loci.formats.in

LeicaSCNReader.Pixels(Attributes) - Constructor for class loci.formats.in.LeicaSCNReader.Pixels

leiFilename - Variable in class loci.formats.in.LeicaReader

Name of current LEI file

len - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Length of each piece of code-block's codewords

len - Variable in class jj2000.j2k.util.ISRandomAccessIO

len - Variable in class loci.plugins.util.BFVirtualStack

lenC - Variable in class loci.formats.FileStitcher

Component lengths for each axis type.

lenCalc - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The length calculation type for each tile-component

length() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

Returns the number of bytes currently in the FileChannel.

length() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Returns the number of bytes currently in the FileChannel.

length() - Method in class com.sun.media.imageio.stream.RawImageInputStream

length() - Method in class com.sun.media.imageio.stream.SectorStreamSegmentMapper

length() - Method in class com.sun.media.imageio.stream.SegmentedImageInputStream

length() - Method in class com.sun.media.imageio.stream.StreamSegmentMapperImpl

length - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Box length, extra length, type and content data array

length() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Returns the length of the data stream.

length() - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput

Returns the length, in bytes, of the output bit stream as written by this object.

length() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the current length of the stream, in bytes, taking into account any buffering.

length() - Method in interface jj2000.j2k.io.RandomAccessIO

Returns the current length of the stream, in bytes, taking into account any buffering.

length() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the length of the stream.

length() - Method in class loci.common.ByteArrayHandle

length() - Method in class loci.common.FileHandle

length() - Method in interface loci.common.IRandomAccess

Returns the length of this stream.

length() - Method in class loci.common.Location

length() - Method in class loci.common.NIOFileHandle

length() - Method in class loci.common.NIOInputStream

Gets the number of bytes in the file.

length - Variable in class loci.common.RandomAccessInputStream

length() - Method in class loci.common.RandomAccessInputStream

Gets the number of bytes in the file.

length() - Method in class loci.common.RandomAccessOutputStream

Returns the length of the file.

length - Variable in class loci.common.StreamHandle

Length of the stream.

length() - Method in class loci.common.StreamHandle

length() - Method in class loci.formats.cache.CacheStrategy

Shortcut for computing total number of positions.

length - Variable in class loci.formats.in.APNGReader.PNGBlock

length - Variable in class loci.formats.in.IM3Reader.IM3Record

length - Variable in class loci.formats.in.OBFReader.Stack

length() - Method in class loci.formats.Modulo

LENGTH - Static variable in class loci.poi.hpsf.ClassID

The number of bytes occupied by this object in the byte stream.

length() - Method in class loci.poi.hpsf.ClassID

length - Variable in class loci.poi.hpsf.Section.PropertyListEntry

length() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

length() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

length - Variable in class loci.poi.poifs.storage.RawDataBlock

Length - Class in mdbtools.dbengine.functions

Length is the sql length function When passed a string it returns the length of the string

Length() - Constructor for class mdbtools.dbengine.functions.Length

length() - Method in class mdbtools.examples.MemoryRandomAccess

length() - Method in class mdbtools.jdbc2.File

length() - Method in interface mdbtools.publicapi.RandomAccess

Length - Class in ome.units.quantity

A wrapper for the Length class from the units implementation.

Length(Number, Unit<Length>) - Constructor for class ome.units.quantity.Length

length - Variable in class ome.xml.model.BinData

LENGTH_0 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 0 bytes.

LENGTH_2 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 2 bytes.

LENGTH_4 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 4 bytes.

LENGTH_8 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 8 bytes.

LENGTH_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the Length attribute.

LENGTH_LAZY - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Identifier for the lazy length calculation.

LENGTH_LAZY_GOOD - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Identifier for a very simple length calculation.

LENGTH_NEAR_OPT - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Identifier for the near optimal length calculation.

LENGTH_UNKNOWN - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length that is unknown to HPSF yet.

LENGTH_VARIABLE - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a variable length.

lengths - Variable in class loci.formats.cache.CacheStrategy

Length of each dimensional axis.

lengths - Variable in class loci.formats.gui.CacheComponent

Length of each dimensional axis, obtained from cache strategy.

lengths - Variable in class loci.formats.in.AVIReader

Number of bytes in each plane.

lengths - Variable in class loci.formats.in.DeltavisionReader

lengths - Variable in class loci.formats.in.MNGReader.SeriesInfo

lenLastNoROI - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Length of last packets containing no ROI information

lenMantissa - Variable in class ome.jxr.parser.DatastreamParser

LENS - Static variable in class loci.formats.in.NikonReader

lens - Variable in class loci.formats.in.PSDReader

LENS_TYPE - Static variable in class loci.formats.in.NikonReader

lensNA - Variable in class loci.formats.in.FluoviewReader

lensNA - Variable in class loci.formats.in.FV1000Reader

lensNA - Variable in class loci.formats.in.IvisionReader

lensNA - Variable in class loci.formats.in.LIFReader

lensNA - Variable in class loci.formats.in.MetamorphHandler

lensNA - Variable in class loci.formats.in.NikonTiffReader

lensNA - Variable in class loci.formats.in.OperettaReader.Plane

lensNA - Variable in class loci.formats.in.ZeissLSMReader.Recording

lensNA - Variable in class ome.xml.model.Objective

lenT - Variable in class loci.formats.FileStitcher

Component lengths for each axis type.

lenZ - Variable in class loci.formats.FileStitcher

Component lengths for each axis type.

LEO_TAG - Static variable in class loci.formats.in.LEOReader

LEOReader - Class in loci.formats.in

LEOReader is the file format reader for LEO EM files.

LEOReader() - Constructor for class loci.formats.in.LEOReader

Constructs a new LEO reader.

LESS_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Less Dots

LESS_THAN - Static variable in class mdbtools.dbengine.sql.Equation

LESS_THAN_OR_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation

LessEqual() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and translate Less than or Equal

LessEqualPtg - Class in loci.poi.hssf.record.formula

Ptg class to implement less than or equal

LessEqualPtg() - Constructor for class loci.poi.hssf.record.formula.LessEqualPtg

Creates new LessEqualPtg

LessEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.LessEqualPtg

LessThan() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a Less Than

LESSTHAN - Static variable in class loci.poi.hssf.record.formula.LessThanPtg

identifier for LESS THAN char

LessThanPtg - Class in loci.poi.hssf.record.formula

Less than operator PTG "<".

LessThanPtg() - Constructor for class loci.poi.hssf.record.formula.LessThanPtg

Constructor.

LessThanPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.LessThanPtg

Constructor.

letter - Variable in class loci.formats.ResourceNamer

LETTER_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

level - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

level - Variable in class jj2000.j2k.wavelet.Subband

The level in the tree to which this subband belongs, which is the number of wavelet decompositions performed to produce this subband.

level - Variable in class loci.formats.in.BioRadReader.Note

level - Variable in class loci.formats.in.DefaultMetadataOptions

level - Variable in class loci.formats.in.FlexReader.FlexHandler

level - Variable in class loci.formats.in.LeicaHandler

levelShift - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

lh - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child LH

LI - Static variable in class ome.units.UNITS

LIB_STATE_LOADED - Static variable in class jj2000.j2k.util.NativeServices

Library load state ID indicating that the library was successfully loaded.

LIB_STATE_NOT_FOUND - Static variable in class jj2000.j2k.util.NativeServices

Library load state ID indicating that an attempt to load the library was done and that it could not be found.

LIB_STATE_NOT_LOADED - Static variable in class jj2000.j2k.util.NativeServices

Library load state ID indicating that no attept to load the library has been done yet.

libClass - Variable in class loci.plugins.config.LibraryEntry

LibraryChecker - Class in loci.plugins.util

Utility methods for verifying that classes are present and versions are correct.

LibraryChecker() - Constructor for class loci.plugins.util.LibraryChecker

LibraryChecker.Library - Enum in loci.plugins.util

List of possible libraries for which to check.

LibraryChecker.Library() - Constructor for enum loci.plugins.util.LibraryChecker.Library

LibraryEntry - Class in loci.plugins.config

A list entry for the configuration window's Libraries tab.

LibraryEntry(PrintWriter, HashMap<String, String>) - Constructor for class loci.plugins.config.LibraryEntry

LibraryEntry(PrintWriter, String, String, String, String, String, String, String) - Constructor for class loci.plugins.config.LibraryEntry

libraryFound - Static variable in class loci.formats.in.LegacyND2Reader

libraryFound - Static variable in class loci.formats.in.SlideBook6Reader

libraryLoaded - Static variable in class loci.formats.services.JPEGTurboServiceImpl

libsList - Variable in class loci.plugins.config.ConfigWindow

libsListModel - Variable in class loci.plugins.config.ConfigWindow

libState - Static variable in class jj2000.j2k.util.NativeServices

The state of the library loading

license - Variable in class loci.formats.services.LuraWaveServiceImpl

License code.

license - Variable in class loci.plugins.config.ConfigWindow

license - Variable in class loci.plugins.config.LibraryEntry

LICENSE_PROPERTY - Static variable in class loci.formats.services.LuraWaveServiceImpl

System property to check for the LuraWave license code.

licenseBox - Variable in class loci.plugins.config.FlexWidgets

LICOR_MAGIC_STRING - Static variable in class loci.formats.in.L2DReader

LIF_MAGIC_BYTE - Static variable in class loci.formats.in.LIFReader

LIF_MEMORY_BYTE - Static variable in class loci.formats.in.LIFReader

LIFETIME - Static variable in class loci.formats.FormatTools

Identifies the Lifetime dimensional type, representing a dimension consisting of a lifetime histogram.

lifetime - Variable in class loci.formats.in.ICSReader

Whether or not the channels represent lifetime histogram bins.

LIFF_MAGIC_BYTES - Static variable in class loci.formats.in.OpenlabReader

LiFlimReader - Class in loci.formats.in

LiFlimReader is the file format reader for LI-FLIM files.

LiFlimReader() - Constructor for class loci.formats.in.LiFlimReader

Constructs a new LI-FLIM reader.

LiFlimReader.ROI - Class in loci.formats.in

LiFlimReader.ROI() - Constructor for class loci.formats.in.LiFlimReader.ROI

LIFReader - Class in loci.formats.in

LIFReader is the file format reader for Leica LIF files.

LIFReader() - Constructor for class loci.formats.in.LIFReader

Constructs a new Leica LIF reader.

LIFReader.ROI - Class in loci.formats.in

LIFReader.ROI() - Constructor for class loci.formats.in.LIFReader.ROI

LIGHT_SOURCE - Static variable in class loci.formats.tiff.IFD

LIGHT_SOURCE - Static variable in class loci.tests.testng.Configuration

LIGHT_SOURCE_CLOUDY_WEATHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_COOL_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D50 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D55 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D65 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D75 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_DAY_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_DAYLIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_DAYLIGHT_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_FINE_WEATHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_FLASH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_ISO_STUDIO_TUNGSTEN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_OTHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_SHADE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_STANDARD_LIGHT_A - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_STANDARD_LIGHT_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_STANDARD_LIGHT_C - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_TUNGSTEN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCES - Static variable in class ome.specification.XMLMockObjects

The light sources to handle.

LIGHT_TYPE - Static variable in class loci.formats.in.NikonReader

LightEmittingDiode - Class in ome.xml.model

LightEmittingDiode() - Constructor for class ome.xml.model.LightEmittingDiode

Default constructor.

LightEmittingDiode(Element, OMEModel) - Constructor for class ome.xml.model.LightEmittingDiode

Constructs LightEmittingDiode recursively from an XML DOM tree.

LightEmittingDiode(LightEmittingDiode) - Constructor for class ome.xml.model.LightEmittingDiode

Copy constructor.

lightPath - Variable in class ome.xml.model.Channel

LightPath - Class in ome.xml.model

LightPath() - Constructor for class ome.xml.model.LightPath

Default constructor.

LightPath(Element, OMEModel) - Constructor for class ome.xml.model.LightPath

Constructs LightPath recursively from an XML DOM tree.

LightPath(LightPath) - Constructor for class ome.xml.model.LightPath

Copy constructor.

lightPathEmissionFilterLinks - Variable in class ome.xml.model.Filter

lightPathExcitationFilterLinks - Variable in class ome.xml.model.Filter

lightPathLinks - Variable in class ome.xml.model.Annotation

lightPaths - Variable in class ome.xml.model.Dichroic

LightSource - Class in ome.xml.model

LightSource() - Constructor for class ome.xml.model.LightSource

Default constructor.

LightSource(Element, OMEModel) - Constructor for class ome.xml.model.LightSource

Constructs LightSource recursively from an XML DOM tree.

LightSource(LightSource) - Constructor for class ome.xml.model.LightSource

Copy constructor.

lightSource - Variable in class ome.xml.model.LightSourceSettings

LIGHTSOURCE_POWER - Static variable in class ome.specification.XMLMockObjects

The default power of a light source.

lightSourceCombinationIDs - Variable in class loci.formats.in.FlexReader

lightSourceCombinationRefs - Variable in class loci.formats.in.FlexReader

lightSourceID - Variable in class loci.formats.in.FlexReader.FlexHandler

lightSourceIDs - Variable in class loci.formats.in.FlexReader

lightSourceLinks - Variable in class ome.xml.model.Annotation

lightSources - Variable in class ome.xml.model.Instrument

lightSourceSettings - Variable in class ome.xml.model.Channel

LightSourceSettings - Class in ome.xml.model

LightSourceSettings() - Constructor for class ome.xml.model.LightSourceSettings

Default constructor.

LightSourceSettings(Element, OMEModel) - Constructor for class ome.xml.model.LightSourceSettings

Constructs LightSourceSettings recursively from an XML DOM tree.

LightSourceSettings(LightSourceSettings) - Constructor for class ome.xml.model.LightSourceSettings

Copy constructor.

lightSourceSettingsCombinations - Variable in class ome.xml.model.MicrobeamManipulation

limit - Variable in class loci.common.CBZip2InputStream.Data

limit - Variable in class loci.poi.poifs.filesystem.DocumentOutputStream

limit - Variable in class loci.poi.poifs.filesystem.POIFSWriterEvent

limit_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

limit at which current number of bits code size has to be increased

limitCheck(int) - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

limitHeight(JComponent) - Method in class loci.formats.gui.DataConverter

LIMReader - Class in loci.formats.in

LIMReader is the file format reader for Laboratory Imaging/Nikon LIM files.

LIMReader() - Constructor for class loci.formats.in.LIMReader

Constructs a new LIM reader.

LINE - Static variable in class loci.formats.in.FV1000Reader

line - Variable in class loci.formats.in.FV1000Reader

LINE - Static variable in class loci.formats.in.LeicaHandler.ROI

LINE - Static variable in class loci.formats.in.LIFReader.ROI

LINE - Static variable in class loci.formats.in.ZeissLSMReader

line - Variable in class loci.formats.tools.MakeTestOmeTiff.TextLine

Line - Class in ome.xml.model

Line() - Constructor for class ome.xml.model.Line

Default constructor.

Line(Element, OMEModel) - Constructor for class ome.xml.model.Line

Constructs Line recursively from an XML DOM tree.

Line(Line) - Constructor for class ome.xml.model.Line

Copy constructor.

LINE_FEED - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

LINE_LENGTH - Static variable in class loci.formats.in.FitsReader

LINE_OF_STRAIGHT_SEGMENTS - Static variable in class loci.poi.ddf.EscherShapePathProperty

LINE_PATTERN_DARK_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_DASH - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_DASH_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_LIGHT_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_MEDIUM_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_NONE - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_SOLID - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINEAR - Static variable in class loci.formats.in.GelReader

lineBitNum - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

LineCap - Enum in ome.xml.model.enums

LineCap(String) - Constructor for enum ome.xml.model.enums.LineCap

lineCap - Variable in class ome.xml.model.Shape

LineCapEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for LineCap.

LineCapEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LineCapEnumHandler

linediv - Variable in class loci.formats.in.SDTInfo

Line predivider = 2 ** (linediv).

lineEndPositions - Variable in class loci.formats.in.BaseZeissReader.Shape

lineEndSize - Variable in class loci.formats.in.BaseZeissReader.Shape

lineEndStyle - Variable in class loci.formats.in.BaseZeissReader.Shape

LineFormatRecord - Class in loci.poi.hssf.record

Describes a line format record.

LineFormatRecord() - Constructor for class loci.poi.hssf.record.LineFormatRecord

LineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LineFormatRecord

Constructs a LineFormat record and sets its fields appropriately.

lineSeparator - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

lineSeparator - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

LineShape - Class in loci.poi.hssf.model

Represents a line shape and creates all the line specific low level records.

LineShape(HSSFSimpleShape, int) - Constructor for class loci.poi.hssf.model.LineShape

Creates the line shape from the highlevel user shape.

lineStride - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The strides for pixel, band, and scanline.

lineStyle - Variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE__ANYLINE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__ARROWHEADSOK - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__BACKCOLOR - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__COLOR - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__CRMOD - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLBLIP - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLBLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLBLIPNAME - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLDZTYPE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLHEIGHT - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLWIDTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__HITLINETEST - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEDASHING - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEDASHSTYLE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEENDARROWHEAD - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEENDARROWLENGTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEENDARROWWIDTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEENDCAPSTYLE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEESTARTARROWLENGTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEFILLSHAPE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEJOINSTYLE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEMITERLIMIT - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINESTARTARROWHEAD - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINESTARTARROWWIDTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINESTYLE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINETYPE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEWIDTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__NOLINEDRAWDASH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__OPACITY - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE_DASHDOTDOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DASHDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DASHDOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DASHGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DASHSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_LONGDASHDOTDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_LONGDASHDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_LONGDASHGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_SOLID - Static variable in class loci.poi.hssf.usermodel.HSSFShape

lineStyleColor - Variable in class loci.poi.hssf.usermodel.HSSFShape

lineTo(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

lineWidth - Variable in class loci.formats.in.BaseZeissReader.Shape

linewidth - Variable in class loci.formats.in.LeicaHandler.ROI

linewidth - Variable in class loci.formats.in.LIFReader.ROI

lineWidth - Variable in class loci.poi.hssf.usermodel.HSSFShape

LINEWIDTH_DEFAULT - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINEWIDTH_ONE_PT - Static variable in class loci.poi.hssf.usermodel.HSSFShape

link(Reference, OMEModelObject) - Method in class ome.xml.model.AbstractOMEModelObject

link(Reference, OMEModelObject) - Method in class ome.xml.model.AffineTransform

link(Reference, OMEModelObject) - Method in class ome.xml.model.Annotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.AnnotationRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Arc

link(Reference, OMEModelObject) - Method in class ome.xml.model.BasicAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.BinaryFile

link(Reference, OMEModelObject) - Method in class ome.xml.model.BinaryOnly

link(Reference, OMEModelObject) - Method in class ome.xml.model.BinData

link(Reference, OMEModelObject) - Method in class ome.xml.model.BooleanAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Channel

link(Reference, OMEModelObject) - Method in class ome.xml.model.ChannelRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.CommentAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Dataset

link(Reference, OMEModelObject) - Method in class ome.xml.model.DatasetRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Detector

link(Reference, OMEModelObject) - Method in class ome.xml.model.DetectorSettings

link(Reference, OMEModelObject) - Method in class ome.xml.model.Dichroic

link(Reference, OMEModelObject) - Method in class ome.xml.model.DichroicRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.DoubleAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Ellipse

link(Reference, OMEModelObject) - Method in class ome.xml.model.EmissionFilterRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExcitationFilterRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Experiment

link(Reference, OMEModelObject) - Method in class ome.xml.model.Experimenter

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterGroup

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterGroupRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimentRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.External

link(Reference, OMEModelObject) - Method in class ome.xml.model.Filament

link(Reference, OMEModelObject) - Method in class ome.xml.model.FileAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Filter

link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterSet

link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterSetRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.GenericExcitationSource

link(Reference, OMEModelObject) - Method in class ome.xml.model.Image

link(Reference, OMEModelObject) - Method in class ome.xml.model.ImageRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.ImagingEnvironment

link(Reference, OMEModelObject) - Method in class ome.xml.model.Instrument

link(Reference, OMEModelObject) - Method in class ome.xml.model.InstrumentRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Label

link(Reference, OMEModelObject) - Method in class ome.xml.model.Laser

link(Reference, OMEModelObject) - Method in class ome.xml.model.Leader

link(Reference, OMEModelObject) - Method in class ome.xml.model.LightEmittingDiode

link(Reference, OMEModelObject) - Method in class ome.xml.model.LightPath

link(Reference, OMEModelObject) - Method in class ome.xml.model.LightSource

link(Reference, OMEModelObject) - Method in class ome.xml.model.LightSourceSettings

link(Reference, OMEModelObject) - Method in class ome.xml.model.Line

link(Reference, OMEModelObject) - Method in class ome.xml.model.ListAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.LongAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.ManufacturerSpec

link(Reference, OMEModelObject) - Method in class ome.xml.model.Map

link(Reference, OMEModelObject) - Method in class ome.xml.model.MapAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.MapPairs

link(Reference, OMEModelObject) - Method in class ome.xml.model.Mask

link(Reference, OMEModelObject) - Method in class ome.xml.model.MetadataOnly

link(Reference, OMEModelObject) - Method in class ome.xml.model.MicrobeamManipulation

link(Reference, OMEModelObject) - Method in class ome.xml.model.MicrobeamManipulationRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Microscope

link(Reference, OMEModelObject) - Method in class ome.xml.model.NumericAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Objective

link(Reference, OMEModelObject) - Method in class ome.xml.model.ObjectiveSettings

link(Reference, OMEModelObject) - Method in class ome.xml.model.OME

link(Reference, OMEModelObject) - Method in interface ome.xml.model.OMEModelObject

Link a given OME model object to this model object.

link(Reference, OMEModelObject) - Method in class ome.xml.model.Pixels

link(Reference, OMEModelObject) - Method in class ome.xml.model.Plane

link(Reference, OMEModelObject) - Method in class ome.xml.model.Plate

link(Reference, OMEModelObject) - Method in class ome.xml.model.PlateAcquisition

link(Reference, OMEModelObject) - Method in class ome.xml.model.PlateRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Point

link(Reference, OMEModelObject) - Method in class ome.xml.model.Polygon

link(Reference, OMEModelObject) - Method in class ome.xml.model.Polyline

link(Reference, OMEModelObject) - Method in class ome.xml.model.Project

link(Reference, OMEModelObject) - Method in class ome.xml.model.ProjectRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Pump

link(Reference, OMEModelObject) - Method in class ome.xml.model.Reagent

link(Reference, OMEModelObject) - Method in class ome.xml.model.ReagentRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Rectangle

link(Reference, OMEModelObject) - Method in class ome.xml.model.Reference

link(Reference, OMEModelObject) - Method in class ome.xml.model.Rights

link(Reference, OMEModelObject) - Method in class ome.xml.model.ROI

link(Reference, OMEModelObject) - Method in class ome.xml.model.ROIRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Screen

link(Reference, OMEModelObject) - Method in class ome.xml.model.Settings

link(Reference, OMEModelObject) - Method in class ome.xml.model.Shape

link(Reference, OMEModelObject) - Method in class ome.xml.model.StageLabel

link(Reference, OMEModelObject) - Method in class ome.xml.model.StructuredAnnotations

link(Reference, OMEModelObject) - Method in class ome.xml.model.TagAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.TermAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.TextAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.TiffData

link(Reference, OMEModelObject) - Method in class ome.xml.model.TimestampAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.TransmittanceRange

link(Reference, OMEModelObject) - Method in class ome.xml.model.TypeAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Union

link(Reference, OMEModelObject) - Method in class ome.xml.model.UUID

link(Reference, OMEModelObject) - Method in class ome.xml.model.Well

link(Reference, OMEModelObject) - Method in class ome.xml.model.WellSample

link(Reference, OMEModelObject) - Method in class ome.xml.model.WellSampleRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.XMLAnnotation

LINK_TYPE_CATEGORIES - Static variable in class loci.poi.hssf.record.LinkedDataRecord

LINK_TYPE_TITLE_OR_TEXT - Static variable in class loci.poi.hssf.record.LinkedDataRecord

LINK_TYPE_VALUES - Static variable in class loci.poi.hssf.record.LinkedDataRecord

linkAnnotation(Annotation) - Method in class ome.xml.model.Annotation

linkAnnotation(Annotation) - Method in class ome.xml.model.Channel

linkAnnotation(Annotation) - Method in class ome.xml.model.Dataset

linkAnnotation(Annotation) - Method in class ome.xml.model.Detector

linkAnnotation(Annotation) - Method in class ome.xml.model.Dichroic

linkAnnotation(Annotation) - Method in class ome.xml.model.Experimenter

linkAnnotation(Annotation) - Method in class ome.xml.model.ExperimenterGroup

linkAnnotation(Annotation) - Method in class ome.xml.model.Filter

linkAnnotation(Annotation) - Method in class ome.xml.model.Image

linkAnnotation(Annotation) - Method in class ome.xml.model.Instrument

linkAnnotation(Annotation) - Method in class ome.xml.model.LightPath

linkAnnotation(Annotation) - Method in class ome.xml.model.LightSource

linkAnnotation(Annotation) - Method in class ome.xml.model.Objective

linkAnnotation(Annotation) - Method in class ome.xml.model.Plane

linkAnnotation(Annotation) - Method in class ome.xml.model.Plate

linkAnnotation(Annotation) - Method in class ome.xml.model.PlateAcquisition

linkAnnotation(Annotation) - Method in class ome.xml.model.Project

linkAnnotation(Annotation) - Method in class ome.xml.model.Reagent

linkAnnotation(Annotation) - Method in class ome.xml.model.ROI

linkAnnotation(Annotation) - Method in class ome.xml.model.Screen

linkAnnotation(Annotation) - Method in class ome.xml.model.Shape

linkAnnotation(Annotation) - Method in class ome.xml.model.Well

linkChannel(Channel) - Method in class ome.xml.model.Annotation

linkChannel(Channel) - Method in class ome.xml.model.FilterSet

linkDataset(Dataset) - Method in class ome.xml.model.Annotation

linkDataset(Dataset) - Method in class ome.xml.model.Experimenter

linkDataset(Dataset) - Method in class ome.xml.model.ExperimenterGroup

linkDataset(Dataset) - Method in class ome.xml.model.Image

linkDataset(Dataset) - Method in class ome.xml.model.Project

linkDetector(Detector) - Method in class ome.xml.model.Annotation

linkDichroic(Dichroic) - Method in class ome.xml.model.Annotation

linkDichroic(Dichroic) - Method in class ome.xml.model.FilterSet

linkDichroic(Dichroic) - Method in class ome.xml.model.LightPath

LinkedDataFormulaField - Class in loci.poi.hssf.record

Not implemented yet.

LinkedDataFormulaField() - Constructor for class loci.poi.hssf.record.LinkedDataFormulaField

LinkedDataRecord - Class in loci.poi.hssf.record

Describes a linked data record.

LinkedDataRecord() - Constructor for class loci.poi.hssf.record.LinkedDataRecord

LinkedDataRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LinkedDataRecord

Constructs a LinkedData record and sets its fields appropriately.

linkedInstruments - Variable in class loci.formats.in.LeicaHandler

linkEmissionFilter(Filter) - Method in class ome.xml.model.FilterSet

linkEmissionFilter(Filter) - Method in class ome.xml.model.LightPath

linkExcitationFilter(Filter) - Method in class ome.xml.model.FilterSet

linkExcitationFilter(Filter) - Method in class ome.xml.model.LightPath

linkExperiment(Experiment) - Method in class ome.xml.model.Experimenter

linkExperiment(Experiment) - Method in class ome.xml.model.Image

linkExperimenter(Experimenter) - Method in class ome.xml.model.Annotation

linkExperimenter(Experimenter) - Method in class ome.xml.model.Dataset

linkExperimenter(Experimenter) - Method in class ome.xml.model.Experiment

linkExperimenter(Experimenter) - Method in class ome.xml.model.ExperimenterGroup

linkExperimenter(Experimenter) - Method in class ome.xml.model.Image

linkExperimenter(Experimenter) - Method in class ome.xml.model.MicrobeamManipulation

linkExperimenter(Experimenter) - Method in class ome.xml.model.Project

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Annotation

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Dataset

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Experimenter

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Image

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Leader

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Project

linkFilter(Filter) - Method in class ome.xml.model.Annotation

linkFilterSet(FilterSet) - Method in class ome.xml.model.Channel

linkFilterSet(FilterSet) - Method in class ome.xml.model.Dichroic

linkFilterSetEmissionFilter(FilterSet) - Method in class ome.xml.model.Filter

linkFilterSetExcitationFilter(FilterSet) - Method in class ome.xml.model.Filter

linkImage(Image) - Method in class ome.xml.model.Annotation

linkImage(Image) - Method in class ome.xml.model.Dataset

linkImage(Image) - Method in class ome.xml.model.Experiment

linkImage(Image) - Method in class ome.xml.model.Experimenter

linkImage(Image) - Method in class ome.xml.model.ExperimenterGroup

linkImage(Image) - Method in class ome.xml.model.Instrument

linkImage(Image) - Method in class ome.xml.model.MicrobeamManipulation

linkImage(Image) - Method in class ome.xml.model.ROI

linkImage(Image) - Method in class ome.xml.model.WellSample

linkInstrument(Instrument) - Method in class ome.xml.model.Annotation

linkInstrument(Instrument) - Method in class ome.xml.model.Image

linkLaser(Laser) - Method in class ome.xml.model.Pump

linkLeader(Experimenter) - Method in class ome.xml.model.ExperimenterGroup

linkLightPath(LightPath) - Method in class ome.xml.model.Annotation

linkLightPath(LightPath) - Method in class ome.xml.model.Dichroic

linkLightPathEmissionFilter(LightPath) - Method in class ome.xml.model.Filter

linkLightPathExcitationFilter(LightPath) - Method in class ome.xml.model.Filter

linkLightSource(LightSource) - Method in class ome.xml.model.Annotation

linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experimenter

linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Image

linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.ROI

linkObjective(Objective) - Method in class ome.xml.model.Annotation

linkPlane(Plane) - Method in class ome.xml.model.Annotation

linkPlate(Plate) - Method in class ome.xml.model.Annotation

linkPlate(Plate) - Method in class ome.xml.model.Screen

linkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Annotation

linkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.WellSample

linkProject(Project) - Method in class ome.xml.model.Annotation

linkProject(Project) - Method in class ome.xml.model.Dataset

linkProject(Project) - Method in class ome.xml.model.Experimenter

linkProject(Project) - Method in class ome.xml.model.ExperimenterGroup

linkPump(LightSource) - Method in class ome.xml.model.Laser

linkReagent(Reagent) - Method in class ome.xml.model.Annotation

linkReagent(Reagent) - Method in class ome.xml.model.Well

linkROI(ROI) - Method in class ome.xml.model.Annotation

linkROI(ROI) - Method in class ome.xml.model.Image

linkROI(ROI) - Method in class ome.xml.model.MicrobeamManipulation

linkScreen(Screen) - Method in class ome.xml.model.Annotation

linkScreen(Screen) - Method in class ome.xml.model.Plate

linkShape(Shape) - Method in class ome.xml.model.Annotation

linkWell(Well) - Method in class ome.xml.model.Annotation

linkWell(Well) - Method in class ome.xml.model.Reagent

linkWellSample(WellSample) - Method in class ome.xml.model.Image

linkWellSample(WellSample) - Method in class ome.xml.model.PlateAcquisition

list(boolean) - Method in class loci.common.Location

Return a list of all of the files in this directory.

list() - Method in class loci.common.Location

Return a list of file names in this directory.

list - Variable in class loci.poi.hssf.dev.FormulaViewer

List2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of objects.

List2d() - Constructor for class loci.poi.util.List2d

ListAnnotation - Class in ome.xml.model

ListAnnotation() - Constructor for class ome.xml.model.ListAnnotation

Default constructor.

ListAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.ListAnnotation

Constructs ListAnnotation recursively from an XML DOM tree.

ListAnnotation(ListAnnotation) - Constructor for class ome.xml.model.ListAnnotation

Copy constructor.

listAnnotations - Variable in class ome.xml.model.StructuredAnnotations

listener - Variable in class loci.poi.hssf.eventmodel.ListenerWrapper

listeners - Variable in class loci.formats.cache.Cache

List of cache event listeners.

listeners - Variable in class loci.formats.cache.CacheStrategy

List of cache event listeners.

listeners - Variable in class loci.plugins.in.ImagePlusReader

listeners - Variable in class loci.plugins.in.ImportProcess

listeners - Variable in class loci.poi.hssf.eventmodel.EventRecordFactory

List of the listners that are registred.

listeners() - Method in class loci.poi.hssf.eventmodel.EventRecordFactory

used for unit tests to test the registration of record listeners.

listeners - Variable in class loci.poi.hssf.eventmodel.ModelFactory

ListenerWrapper - Class in loci.poi.hssf.eventmodel

ListenerWrapper just wraps an ERFListener and adds support for throwing the event to multiple SIDs

ListenerWrapper(ERFListener, short[], boolean) - Constructor for class loci.poi.hssf.eventmodel.ListenerWrapper

listFakeSeries(String) - Method in class loci.formats.in.FakeReader

Traverses a fake file folder structure indicated by traversedDirectory

listFiles() - Method in class loci.common.Location

Return a list of absolute files in this directory.

listFormula(FormulaRecord) - Method in class loci.poi.hssf.dev.FormulaViewer

listing - Variable in class loci.common.Location.ListingsResult

ListManagedBlock - Interface in loci.poi.poifs.storage

An interface for blocks managed by a list that works with a BlockAllocationTable to keep block sequences straight

listMaxLength - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

listMinLength - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

listString - Variable in class loci.formats.in.AVIReader

listToCharArray(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

listToIntArray(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

LITTLE - Static variable in class loci.formats.tiff.TiffConstants

LITTLE_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType

Identifier for little-endian byte ordering (i.e.

LITTLE_ENDIAN - Static variable in class loci.formats.in.BioRadReader

Always little endian.

LITTLE_ENDIAN - Static variable in class loci.formats.in.DeltavisionReader

LITTLE_ENDIAN - Static variable in class loci.formats.in.OBFReader

LITTLE_ENDIAN - Static variable in class loci.formats.in.TextReader

LITTLE_ENDIAN - Static variable in class loci.formats.tiff.IFD

LITTLE_ENDIAN - Static variable in class loci.tests.testng.ConversionTest

LITTLE_ENDIAN - Static variable in class ome.jxr.constants.File

littleEndian - Variable in class loci.formats.codec.CodecOptions

Indicates endianness of pixel data.

littleEndian - Variable in class loci.formats.CoreMetadata

Indicates whether or not each pixel's bytes are in little endian order.

littleEndian - Variable in class loci.formats.out.APNGWriter

littleEndian - Variable in class loci.formats.tools.AmiraParameters

LittleEndian - Class in loci.poi.util

a utility class for handling little-endian numbers, which the 80x86 world is replete with.

LittleEndian() - Constructor for class loci.poi.util.LittleEndian

Constructor for the LittleEndian object

littleEndian - Variable in class ome.metakit.MetakitReader

LittleEndian.BufferUnderrunException - Exception in loci.poi.util

Exception to handle buffer underruns

LittleEndian.BufferUnderrunException() - Constructor for exception loci.poi.util.LittleEndian.BufferUnderrunException

simple constructor

LittleEndianConsts - Interface in loci.poi.util

a repository for constants shared by classes within this package

littleEndianString - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

LIVE_OVERFLOW - Static variable in class loci.formats.in.CellSensReader

ll - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child LL

ll8 - Variable in class loci.common.CBZip2InputStream.Data

LM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the light microscopy domain.

LO - Static variable in class loci.formats.in.DicomReader

load(String, File, boolean) - Static method in class loci.formats.Memoizer

load() - Static method in class org.libjpegturbo.turbojpeg.TJLoader

LoadData - Class in mdbtools.dbengine.tasks

Load any data from a table into data

LoadData(Table) - Constructor for class mdbtools.dbengine.tasks.LoadData

loadedFromMemo - Variable in class loci.formats.Memoizer

Whether the ReaderWrapper.reader instance currently active was loaded from the memo file during Memoizer.setId(String).

loader - Variable in class loci.common.ReflectedUniverse

Deprecated.

Class loader for imported classes.

LOADER - Static variable in class loci.formats.gui.LegacyQTTools

This custom class loader searches additional paths for the QTJava.zip library.

loader - Variable in class loci.formats.gui.PreviewPane

Thumbnail loading thread.

loader - Variable in class loci.plugins.in.ThumbLoader

loaderAlive - Variable in class loci.formats.gui.PreviewPane

Flag indicating whether loader thread should keep running.

loadId - Variable in class loci.formats.gui.PreviewPane

Current ID to load.

loadImage(Image) - Static method in class loci.formats.gui.AWTImageTools

Ensures the given AWT image is fully loaded.

loadLibrary() - Static method in class jj2000.j2k.util.NativeServices

Loads the shared library implementing the native methods of this class and returns true on success.

loadMemo() - Method in class loci.formats.Memoizer

Load a memo file if possible, returning a null if not.

loadOption() - Method in class loci.plugins.prefs.BooleanOption

loadOption() - Method in class loci.plugins.prefs.DoubleOption

loadOption() - Method in class loci.plugins.prefs.Option

Loads the option's value from the ImageJ preferences file.

loadOption() - Method in class loci.plugins.prefs.StringOption

loadOptions() - Method in class loci.plugins.prefs.OptionsList

Loads option values from the ImageJ preferences file.

loadProperties() - Static method in class loci.formats.FormatTools

loadProperties() - Static method in class ome.xml.model.MapPairs

loadReader() - Method in interface loci.formats.Memoizer.Deser

loadReader() - Method in class loci.formats.Memoizer.KryoDeser

loadReader() - Method in class loci.formats.Memoizer.RandomAccessDeser

loadReleaseVersion() - Method in interface loci.formats.Memoizer.Deser

loadReleaseVersion() - Method in class loci.formats.Memoizer.KryoDeser

loadReleaseVersion() - Method in class loci.formats.Memoizer.RandomAccessDeser

loadRevision() - Method in interface loci.formats.Memoizer.Deser

loadRevision() - Method in class loci.formats.Memoizer.KryoDeser

loadRevision() - Method in class loci.formats.Memoizer.RandomAccessDeser

loadStart(File) - Method in interface loci.formats.Memoizer.Deser

loadStart(File) - Method in class loci.formats.Memoizer.KryoDeser

loadStart(File) - Method in class loci.formats.Memoizer.RandomAccessDeser

loadStop() - Method in interface loci.formats.Memoizer.Deser

loadStop() - Method in class loci.formats.Memoizer.KryoDeser

loadStop() - Method in class loci.formats.Memoizer.RandomAccessDeser

loadStream - Variable in class loci.formats.Memoizer.RandomAccessDeser

loadThumb(BufferedImageReader, int, Panel, boolean) - Static method in class loci.plugins.in.ThumbLoader

loadVersion() - Method in interface loci.formats.Memoizer.Deser

loadVersion() - Method in class loci.formats.Memoizer.KryoDeser

loadVersion() - Method in class loci.formats.Memoizer.RandomAccessDeser

loc - Variable in class loci.poi.hssf.model.Sheet

localColorTable - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

locateExperimentFile(String) - Method in class loci.formats.in.BDReader

locateFirstValidFile() - Method in class loci.formats.in.MetamorphReader

Locates the first valid file in the STK arrays.

locateIFD(int, long[], long[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

locateImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

Location - Class in loci.common

Pseudo-extension of java.io.File that supports reading over HTTP (among other things).

Location(String) - Constructor for class loci.common.Location

Location(File) - Constructor for class loci.common.Location

Location(String, String) - Constructor for class loci.common.Location

Location(Location, String) - Constructor for class loci.common.Location

location - Variable in class loci.formats.in.DicomReader

Location.ListingsResult - Class in loci.common

Location.ListingsResult(String[], long) - Constructor for class loci.common.Location.ListingsResult

LOCATION_HTTP - Static variable in class loci.plugins.in.ImporterOptions

LOCATION_LOCAL - Static variable in class loci.plugins.in.ImporterOptions

LOCATION_OMERO - Static variable in class loci.plugins.in.ImporterOptions

LocationDialog - Class in loci.plugins.in

Bio-Formats Importer location chooser dialog box.

LocationDialog(ImportProcess) - Constructor for class loci.plugins.in.LocationDialog

Creates a location chooser dialog for the Bio-Formats Importer.

locator - Variable in class loci.formats.in.OMEXMLReader.OMEXMLHandler

loci.common - package loci.common

loci.common.enumeration - package loci.common.enumeration

loci.common.services - package loci.common.services

loci.common.xml - package loci.common.xml

loci.formats - package loci.formats

Bio-Formats: a library for reading and writing popular microscopy file formats.

loci.formats.cache - package loci.formats.cache

Package containing Bio-Formats caching logic, for managing subsets of large collections of image planes in memory.

loci.formats.codec - package loci.formats.codec

Package containing Bio-Formats compression and decompression logic.

loci.formats.gui - package loci.formats.gui

Package containing Bio-Formats graphical user interface code.

loci.formats.in - package loci.formats.in

Package containing Bio-Formats file format readers.

loci.formats.meta - package loci.formats.meta

Package containing core Bio-Formats metadata interfaces for the OME data model.

loci.formats.ome - package loci.formats.ome

Package containing Bio-Formats OME-related logic for OME-XML metadata, and database import, upload and download.

loci.formats.out - package loci.formats.out

Package containing Bio-Formats file format writers.

loci.formats.services - package loci.formats.services

loci.formats.tiff - package loci.formats.tiff

Package containing Bio-Formats TIFF code of general utility.

loci.formats.tools - package loci.formats.tools

Package containing utility methods corresponding to the Bio-Formats command line tools.

loci.plugins - package loci.plugins

Bio-Formats Plugins: a collection of plugins for ImageJ, including the Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, Data Browser and Stack Slicer.

loci.plugins.config - package loci.plugins.config

Bio-Formats Plugins Configuration plugin for ImageJ.

loci.plugins.in - package loci.plugins.in

Bio-Formats Importer plugin for ImageJ.

loci.plugins.macro - package loci.plugins.macro

Bio-Formats Macro Extensions plugin for ImageJ.

loci.plugins.out - package loci.plugins.out

Bio-Formats Exporter plugin for ImageJ.

loci.plugins.prefs - package loci.plugins.prefs

Classes for managing Bio-Formats plugins preferences.

loci.plugins.shortcut - package loci.plugins.shortcut

Bio-Formats Plugins Shortcut Window plugin for ImageJ.

loci.plugins.util - package loci.plugins.util

Utility classes and methods for the Bio-Formats plugins for ImageJ.

loci.poi - package loci.poi

loci.poi.ddf - package loci.poi.ddf

This package contains classes for decoding the Microsoft Office Drawing format otherwise known as escher henceforth known in POI as the Dreadful Drawing Format.

loci.poi.dev - package loci.poi.dev

loci.poi.hpsf - package loci.poi.hpsf

loci.poi.hpsf.wellknown - package loci.poi.hpsf.wellknown

Specific support for DocumentSummaryInformation, SummaryInformation types.

loci.poi.hssf.dev - package loci.poi.hssf.dev

DEV package serves two purposes.

loci.poi.hssf.eventmodel - package loci.poi.hssf.eventmodel

loci.poi.hssf.eventusermodel - package loci.poi.hssf.eventusermodel

HSSF eventmodel Package provides an event-based API for reading HSSF files.

loci.poi.hssf.extractor - package loci.poi.hssf.extractor

loci.poi.hssf.model - package loci.poi.hssf.model

Provides low level API structures for reading, writing, modifying XLS files.

loci.poi.hssf.record - package loci.poi.hssf.record

Record package contains class representations for XLS binary strutures.

loci.poi.hssf.record.aggregates - package loci.poi.hssf.record.aggregates

record aggregates are not real "records" but collections of records that act as a single record.

loci.poi.hssf.record.formula - package loci.poi.hssf.record.formula

formula package contains binary PTG structures used in Formulas

loci.poi.hssf.usermodel - package loci.poi.hssf.usermodel

usermodel package maps HSSF low level strutures to familiar workbook/sheet model

loci.poi.hssf.util - package loci.poi.hssf.util

util package contains tools needed for writing HSSF files that are not necesarily "real" HSSF concepts.

loci.poi.poifs.common - package loci.poi.poifs.common

common package contains constants and other classes shared across all POIFS subpackages

loci.poi.poifs.dev - package loci.poi.poifs.dev

DEV package serves two purposes.

loci.poi.poifs.eventfilesystem - package loci.poi.poifs.eventfilesystem

The eventfilesystem is an efficient method for reading OLE 2 CDF files.

loci.poi.poifs.filesystem - package loci.poi.poifs.filesystem

filesystem package maps OLE 2 Compound document files to a more familiar filesystem interface.

loci.poi.poifs.property - package loci.poi.poifs.property

property package contains high and low level Property structures for POIFS.

loci.poi.poifs.storage - package loci.poi.poifs.storage

storage package contains low level binary structures for POIFS's implementation of the OLE 2 Compound Document Format.

loci.poi.util - package loci.poi.util

Top-level util package are classes that are useful throughout the project.

loci.tests - package loci.tests

Base package for automated and manual testing of the Bio-Formats software packages.

loci.tests.testng - package loci.tests.testng

Package for automated testing of the Bio-Formats software packages using TestNG.

LociConfig - Class in loci.plugins.config

An ImageJ plugin for displaying the Bio-Formats plugins configuration dialog.

LociConfig() - Constructor for class loci.plugins.config.LociConfig

LociExporter - Class in loci.plugins

ImageJ plugin for writing files using the OME Bio-Formats package.

LociExporter() - Constructor for class loci.plugins.LociExporter

LociFunctions - Class in loci.plugins.macro

This class provides macro extensions in ImageJ for Bio-Formats.

LociFunctions() - Constructor for class loci.plugins.macro.LociFunctions

LociImporter - Class in loci.plugins

ImageJ plugin for reading files using the OME Bio-Formats package.

LociImporter() - Constructor for class loci.plugins.LociImporter

LociInstaller - Class in loci.plugins.config

An ImageJ plugin for installing and upgrading libraries related to the Bio-Formats plugins.

LociInstaller() - Constructor for class loci.plugins.config.LociInstaller

LociPrefs - Class in loci.plugins.util

Utility methods for ImageJ preferences for Bio-Formats plugins.

LociPrefs() - Constructor for class loci.plugins.util.LociPrefs

lock - Variable in class jj2000.j2k.util.ThreadPool.ThreadPoolThread

locked - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

locked - Variable in class ome.xml.model.Shape

LOG - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

log - Variable in class loci.plugins.config.ConfigWindow

log() - Method in class loci.plugins.util.RecordedImageProcessor

log - Static variable in class loci.poi.ddf.EscherMetafileBlip

log - Static variable in class loci.poi.ddf.EscherPictBlip

log - Static variable in class loci.poi.hssf.model.Sheet

log - Static variable in class loci.poi.hssf.model.Workbook

log - Static variable in class loci.poi.hssf.usermodel.HSSFPicture

log - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

log - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

log - Variable in class loci.poi.util.CommonsLogger

log(int, Object) - Method in class loci.poi.util.CommonsLogger

Log a message

log(int, Object) - Method in class loci.poi.util.NullLogger

Log a message

log(int, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message

log(int, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object) - Method in class loci.poi.util.POILogger

log(int, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message

log(int, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object) - Method in class loci.poi.util.SystemOutLogger

Log a message

log(String) - Method in class loci.tests.testng.DotTestListener

LOG2 - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The log of 2, natural base

log2 - Static variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

Natural log of 2, used as a convenience variable

log2(int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the floor of the log, base 2, of 'x'.

Log4jTools - Class in loci.common

A utility class with convenience methods for log4j.

Log4jTools() - Constructor for class loci.common.Log4jTools

logarithmicScale - Variable in class loci.poi.hssf.record.ValueRangeRecord

LogbackTools - Class in loci.common

A utility class with convenience methods for logback.

LogbackTools() - Constructor for class loci.common.LogbackTools

logFile - Variable in class loci.formats.in.DeltavisionReader

logFiles - Variable in class loci.formats.in.CellWorxReader

logFormatted(int, String, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

logFormatted(int, String, Object, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

LOGGER - Static variable in class loci.common.CBZip2InputStream

LOGGER - Static variable in class loci.common.DateTools

Logger for this class.

LOGGER - Static variable in class loci.common.IniParser

Logger for this class.

LOGGER - Static variable in class loci.common.IniWriter

Logger for this class.

LOGGER - Static variable in class loci.common.Location

LOGGER - Static variable in class loci.common.NIOByteBufferProvider

Logger for this class.

LOGGER - Static variable in class loci.common.NIOFileHandle

Logger for this class.

LOGGER - Static variable in class loci.common.RandomAccessInputStream

Logger for this class.

LOGGER - Static variable in class loci.common.ReflectedUniverse

Deprecated.

LOGGER - Static variable in class loci.common.services.ServiceFactory

Logger for this class.

LOGGER - Static variable in class loci.common.xml.BaseHandler

LOGGER - Static variable in class loci.common.xml.XMLTools

LOGGER - Static variable in class loci.formats.AxisGuesser

LOGGER - Static variable in class loci.formats.cache.CacheUpdater

LOGGER - Static variable in class loci.formats.ClassList

LOGGER - Static variable in class loci.formats.codec.BaseCodec

LOGGER - Static variable in class loci.formats.codec.BitBuffer

Deprecated.

LOGGER - Static variable in class loci.formats.codec.BitWriter

Deprecated.

LOGGER - Static variable in class loci.formats.codec.JPEGTileDecoder

LOGGER - Static variable in class loci.formats.FilePattern

LOGGER - Static variable in class loci.formats.FileStitcher

LOGGER - Static variable in class loci.formats.FormatHandler

LOGGER - Static variable in class loci.formats.FormatTools

LOGGER - Static variable in class loci.formats.gui.AWTImageTools

LOGGER - Static variable in class loci.formats.gui.CacheComponent

LOGGER - Static variable in class loci.formats.gui.DataConverter

LOGGER - Static variable in class loci.formats.gui.ImageViewer

LOGGER - Static variable in class loci.formats.gui.LegacyQTTools

LOGGER - Static variable in class loci.formats.gui.PreviewPane

LOGGER - Static variable in class loci.formats.ImageReader

LOGGER - Static variable in class loci.formats.ImageWriter

LOGGER - Static variable in class loci.formats.in.BaseTiffReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.DNGReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.IM3Reader

Logger for outputting summary diagnostics.

LOGGER - Static variable in class loci.formats.in.ImarisTiffReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.JPEG2000MetadataParser

Logger for this class.

LOGGER - Static variable in class loci.formats.in.JPEG2000Reader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.JPXReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.LeicaHandler

Logger for this class.

LOGGER - Static variable in class loci.formats.in.LeicaReader

LOGGER - Static variable in class loci.formats.in.LeicaSCNReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.MetamorphReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.MinimalTiffReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.ND2Handler

LOGGER - Static variable in class loci.formats.in.NikonReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.PyramidTiffReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.SVSReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.TiffReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.TrestleReader

Logger for this class.

LOGGER - Static variable in class loci.formats.in.ZeissTIFFHandler

LOGGER - Static variable in class loci.formats.Memoizer

Default Logger for the memoizer class

LOGGER - Static variable in class loci.formats.MetadataTools

logger - Variable in class loci.formats.services.JPEGTurboServiceImpl

LOGGER - Static variable in class loci.formats.services.OMEXMLServiceImpl

Logger for this class.

LOGGER - Static variable in class loci.formats.tiff.IFD

LOGGER - Static variable in enum loci.formats.tiff.TiffCompression

LOGGER - Static variable in class loci.formats.tiff.TiffParser

LOGGER - Static variable in class loci.formats.tiff.TiffSaver

LOGGER - Static variable in class loci.formats.TileStitcher

LOGGER - Static variable in class loci.formats.tools.EditTiffG

LOGGER - Static variable in class loci.formats.tools.FakeImage

LOGGER - Static variable in class loci.formats.tools.PrintFormatTable

LOGGER - Static variable in class loci.formats.UpgradeChecker

logger - Static variable in class loci.poi.hssf.usermodel.EscherGraphics

logger - Variable in class loci.poi.hssf.usermodel.EscherGraphics2d

logger - Variable in class loci.poi.POIDocument

For our own logging use

LOGGER - Static variable in class loci.tests.ImageTester

LOGGER - Static variable in class loci.tests.IOTester

LOGGER - Static variable in class loci.tests.SingularityTest

LOGGER - Static variable in class loci.tests.testng.ConfigurationTree

LOGGER - Static variable in class loci.tests.testng.FileHandleTest

LOGGER - Static variable in class loci.tests.testng.FormatReaderTest

LOGGER - Static variable in class loci.tests.testng.FormatReaderTestFactory

LOGGER - Static variable in class loci.tests.testng.FormatWriterTest

LOGGER - Static variable in class loci.tests.testng.FormatWriterTestFactory

LOGGER - Static variable in class loci.tests.testng.Jpeg2000GrindTest

LOGGER - Static variable in class loci.tests.testng.OpenBytesPerformanceTest

LOGGER - Static variable in class loci.tests.testng.TestTools

LOGGER - Static variable in class ome.xml.meta.AbstractOMEXMLMetadata

LOGGER - Static variable in class ome.xml.model.AffineTransform

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Annotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.AnnotationRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Arc

Logger for this class.

LOGGER - Static variable in class ome.xml.model.BasicAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.BinaryFile

Logger for this class.

LOGGER - Static variable in class ome.xml.model.BinaryOnly

Logger for this class.

LOGGER - Static variable in class ome.xml.model.BinData

Logger for this class.

LOGGER - Static variable in class ome.xml.model.BooleanAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Channel

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ChannelRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.CommentAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Dataset

Logger for this class.

LOGGER - Static variable in class ome.xml.model.DatasetRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Detector

Logger for this class.

LOGGER - Static variable in class ome.xml.model.DetectorSettings

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Dichroic

Logger for this class.

LOGGER - Static variable in class ome.xml.model.DichroicRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.DoubleAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Ellipse

Logger for this class.

LOGGER - Static variable in class ome.xml.model.EmissionFilterRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.ArcTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.BinningEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.CompressionEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.CorrectionEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.FillRuleEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.FilterTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.FontFamilyEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.FontStyleEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.ImmersionEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.LaserMediumEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.LaserTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.LineCapEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.MarkerEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.MediumEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.NamingConventionEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.PixelTypeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.PulseEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ExcitationFilterRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Experiment

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Experimenter

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ExperimenterGroup

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ExperimenterGroupRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ExperimenterRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ExperimentRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.External

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Filament

Logger for this class.

LOGGER - Static variable in class ome.xml.model.FileAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Filter

Logger for this class.

LOGGER - Static variable in class ome.xml.model.FilterRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.FilterSet

Logger for this class.

LOGGER - Static variable in class ome.xml.model.FilterSetRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.GenericExcitationSource

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Image

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ImageRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ImagingEnvironment

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Instrument

Logger for this class.

LOGGER - Static variable in class ome.xml.model.InstrumentRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Label

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Laser

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Leader

Logger for this class.

LOGGER - Static variable in class ome.xml.model.LightEmittingDiode

Logger for this class.

LOGGER - Static variable in class ome.xml.model.LightPath

Logger for this class.

LOGGER - Static variable in class ome.xml.model.LightSource

Logger for this class.

LOGGER - Static variable in class ome.xml.model.LightSourceSettings

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Line

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ListAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.LongAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ManufacturerSpec

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Map

Logger for this class.

LOGGER - Static variable in class ome.xml.model.MapAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.MapPair

Logger for this class.

LOGGER - Static variable in class ome.xml.model.MapPairs

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Mask

Logger for this class.

LOGGER - Static variable in class ome.xml.model.MetadataOnly

Logger for this class.

LOGGER - Static variable in class ome.xml.model.MicrobeamManipulation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.MicrobeamManipulationRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Microscope

Logger for this class.

LOGGER - Static variable in class ome.xml.model.NumericAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Objective

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ObjectiveSettings

Logger for this class.

LOGGER - Static variable in class ome.xml.model.OME

Logger for this class.

LOGGER - Static variable in class ome.xml.model.OMEModelImpl

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Pixels

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Plane

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Plate

Logger for this class.

LOGGER - Static variable in class ome.xml.model.PlateAcquisition

Logger for this class.

LOGGER - Static variable in class ome.xml.model.PlateRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Point

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Polygon

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Polyline

Logger for this class.

LOGGER - Static variable in class ome.xml.model.primitives.Timestamp

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Project

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ProjectRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Pump

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Reagent

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ReagentRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Rectangle

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Reference

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Rights

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ROI

Logger for this class.

LOGGER - Static variable in class ome.xml.model.ROIRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Screen

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Settings

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Shape

Logger for this class.

LOGGER - Static variable in class ome.xml.model.StageLabel

Logger for this class.

LOGGER - Static variable in class ome.xml.model.StructuredAnnotations

Logger for this class.

LOGGER - Static variable in class ome.xml.model.TagAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.TermAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.TextAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.TiffData

Logger for this class.

LOGGER - Static variable in class ome.xml.model.TimestampAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.TransmittanceRange

Logger for this class.

LOGGER - Static variable in class ome.xml.model.TypeAnnotation

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Union

Logger for this class.

LOGGER - Static variable in class ome.xml.model.UUID

Logger for this class.

LOGGER - Static variable in class ome.xml.model.Well

Logger for this class.

LOGGER - Static variable in class ome.xml.model.WellSample

Logger for this class.

LOGGER - Static variable in class ome.xml.model.WellSampleRef

Logger for this class.

LOGGER - Static variable in class ome.xml.model.XMLAnnotation

Logger for this class.

loggerList - Static variable in class jj2000.j2k.util.FacilityManager

The loggers associated to different threads

logicalScreenHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

logicalScreenWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

logJJ2000Msg - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Whether to log JJ2000 messages.

logUnsupportedTypes - Static variable in class loci.poi.hpsf.VariantSupport

LONG - Static variable in class loci.formats.in.CellSensReader

LONG_DATE_FORMAT - Static variable in class loci.formats.in.MetamorphReader

LONG_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

LongAnnotation - Class in ome.xml.model

LongAnnotation() - Constructor for class ome.xml.model.LongAnnotation

Default constructor.

LongAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.LongAnnotation

Constructs LongAnnotation recursively from an XML DOM tree.

LongAnnotation(LongAnnotation) - Constructor for class ome.xml.model.LongAnnotation

Copy constructor.

longAnnotations - Variable in class ome.xml.model.StructuredAnnotations

LongField - Class in loci.poi.util

representation of a long (16-bit) field at a fixed location within a byte array

LongField(int) - Constructor for class loci.poi.util.LongField

construct the LongField with its offset into its containing byte array

LongField(int, long) - Constructor for class loci.poi.util.LongField

construct the LongField with its offset into its containing byte array and initialize its value

LongField(int, byte[]) - Constructor for class loci.poi.util.LongField

Construct the LongField with its offset into its containing byte array and initialize its value from its byte array

LongField(int, long, byte[]) - Constructor for class loci.poi.util.LongField

construct the LongField with its offset into its containing byte array, initialize its value, and write the value to a byte array

LONGITUDE_REF_EAST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLongitudeRef" and "GPSDestLongitudeRef" tags.

LONGITUDE_REF_WEST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLongitudeRef" and "GPSDestLongitudeRef" tags.

longsToBytes(long[], boolean) - Static method in class loci.common.DataTools

Translates an array of long values into an array of byte values.

longToBytes(long, boolean) - Static method in class loci.common.DataTools

Translates the long value into an array of eight bytes.

longValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a long.

longWordFlag - Variable in class ome.jxr.parser.DatastreamParser

look - Variable in class loci.poi.hssf.model.FormulaParser

lookForCompanion - Variable in class loci.formats.in.NRRDReader

lookup(Location) - Method in class loci.common.CaseInsensitiveLocation.Cache

Look up a filename in the cache.

lookup - Static variable in enum loci.formats.codec.CompressionType

Map used to retrieve the compression type corresponding to the code.

lookup - Static variable in enum loci.formats.codec.JPEG2000BoxType

Map used to retrieve the box type corresponding to the code.

lookup - Static variable in enum loci.formats.codec.JPEG2000SegmentMarker

Map used to retrieve the segment marker corresponding to the code.

lookup - Static variable in enum loci.formats.in.BaseZeissReader.Charset

lookup - Static variable in enum loci.formats.in.BaseZeissReader.DrawStyle

lookup - Static variable in enum loci.formats.in.BaseZeissReader.FeatureType

lookup - Static variable in enum loci.formats.in.BaseZeissReader.FillStyle

lookup - Static variable in enum loci.formats.in.BaseZeissReader.LineEndPositions

lookup - Static variable in enum loci.formats.in.BaseZeissReader.LineEndStyle

lookup - Static variable in enum loci.formats.in.BaseZeissReader.PointStyle

lookup - Static variable in enum loci.formats.in.BaseZeissReader.TextAlignment

lookup - Variable in class loci.formats.in.PictReader

Color lookup table for palette color images.

lookup - Static variable in enum loci.formats.tiff.IFDType

lookup - Static variable in enum loci.formats.tiff.PhotoInterp

lookup - Static variable in enum loci.formats.tiff.TiffCompression

Reverse lookup of code to TIFF compression enumerate value.

lookup(Comparable, int) - Method in class loci.poi.util.BinaryTree

do the actual lookup of a piece of data

lookupBase64Alphabet - Static variable in class loci.formats.codec.Base64Codec

lookupDimension(int, int, int) - Method in class loci.formats.in.LeicaSCNReader.Pixels

lookupFile(int, int, int) - Method in class loci.formats.in.FlexReader

lookupFile(int) - Method in class loci.formats.in.FlexReader

lookupFile(int) - Method in class loci.formats.in.PerkinElmerReader

lookupIndex(String) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

lookupName(short) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

lossless - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Indicates using the lossless scheme or not.

lossless - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Indicates using the loseless scheme or not.

lossless - Variable in class loci.formats.codec.CodecOptions

Used with codecs allowing lossy and lossless compression.

LOSSLESS_DECODER_CONFIGURATION_12 - Static variable in class loci.formats.codec.NikonCodec

LOSSLESS_DECODER_CONFIGURATION_14 - Static variable in class loci.formats.codec.NikonCodec

LosslessJPEGCodec - Class in loci.formats.codec

Decompresses lossless JPEG images.

LosslessJPEGCodec() - Constructor for class loci.formats.codec.LosslessJPEGCodec

LOSSY_DECODER_CONFIGURATION_12 - Static variable in class loci.formats.codec.NikonCodec

LOSSY_DECODER_CONFIGURATION_14 - Static variable in class loci.formats.codec.NikonCodec

lossyCompression - Variable in class loci.formats.in.NikonReader

lotNumber - Variable in class ome.xml.model.ManufacturerSpec

LOW_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy

Lower - Class in mdbtools.dbengine.functions

Lower() - Constructor for class mdbtools.dbengine.functions.Lower

lowFields - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

The fields in this directory which have a low tag number.

lPad - Variable in class loci.formats.gui.CacheIndicator

lpImagePlaneUniformFlag - Variable in class ome.jxr.parser.DatastreamParser

lpoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

LPSynthesisFilter - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The low-pass synthesis filter of the 9x7 wavelet transform

LPSynthesisFilter - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

The low-pass synthesis filter of the 5x3 wavelet transform

lqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

lqcd - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD

lQuit - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The maximum number of layers to decode for any code-block

lrgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN

lrxs - Variable in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

The lower right xs of the ROIs

lrxs - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask

The lower right x coordinates of the applicable ROIs

lrys - Variable in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

The lower right ys of the ROIs

lrys - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask

The lower right y coordinates of the applicable ROIs

lsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

lsmFilenames - Variable in class loci.formats.in.ZeissLSMReader

lsot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT

LT - Static variable in class loci.formats.in.DicomReader

ltype - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The length calculation type to use.

LUMA_BLUE - Static variable in enum loci.formats.tiff.PhotoInterp

LUMA_GREEN - Static variable in enum loci.formats.tiff.PhotoInterp

LUMA_RED - Static variable in enum loci.formats.tiff.PhotoInterp

Default luminance values for YCbCr data.

LumaBlue - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

LumaBlue - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

LumaGreen - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

LumaGreen - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

LumaRed - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

LumaRed - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

LuraWave - Class in loci.plugins.util

Utility methods for dealing with proprietary LuraWave licensing.

LuraWave() - Constructor for class loci.plugins.util.LuraWave

LuraWaveCodec - Class in loci.formats.codec

This class provides LuraWave decompression, using LuraWave's Java decoding library.

LuraWaveCodec() - Constructor for class loci.formats.codec.LuraWaveCodec

LuraWaveService - Interface in loci.formats.services

LuraWaveServiceImpl - Class in loci.formats.services

LuraWaveServiceImpl() - Constructor for class loci.formats.services.LuraWaveServiceImpl

Default constructor.

lut - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

lut - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

The lut in the palette box

lut - Variable in class loci.formats.in.AmiraReader

lut - Variable in class loci.formats.in.APNGReader

lut - Variable in class loci.formats.in.AVIReader

lut - Variable in class loci.formats.in.BioRadReader

lut - Variable in class loci.formats.in.DicomReader

lut - Variable in class loci.formats.in.FV1000Reader

lut - Variable in class loci.formats.in.IvisionReader

lut - Variable in class loci.formats.in.JPEG2000MetadataParser

Color lookup table stored in the file.

lut - Variable in class loci.formats.in.JPEG2000Reader

The color lookup table associated with this file.

lut - Variable in class loci.formats.in.JPXReader

The color lookup table associated with this file.

lut - Variable in class loci.formats.in.KhorosReader

Global lookup table.

lut - Variable in class loci.formats.in.PCXReader

lut - Variable in class loci.formats.in.PSDReader

Lookup table.

lut - Variable in class loci.formats.in.ZeissLMSReader

lut - Variable in class loci.formats.in.ZeissLSMReader

lut16 - Variable in class loci.formats.in.FakeReader

16-bit lookup table, if indexed color, one per channel.

lut8 - Variable in class loci.formats.in.FakeReader

8-bit lookup table, if indexed color, one per channel.

LUT_LENGTH - Static variable in class loci.formats.in.BioRadReader

LUT_SIZE - Static variable in class loci.formats.in.NAFReader

LUTDESC - Static variable in class loci.formats.in.LeicaReader

lutIndex - Variable in class loci.formats.in.PDSReader

lutLength - Variable in class loci.formats.ChannelFiller

Number of LUT components.

lutNames - Variable in class loci.formats.in.FV1000Reader

lutNames - Variable in class loci.formats.in.LeicaHandler

lutNames - Variable in class loci.formats.in.LIFReader

luts - Variable in class loci.formats.in.OpenlabReader

luts - Variable in class loci.plugins.util.VirtualImagePlus

lvls - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder

The number of levels in the tag tree

lvls - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The number of levels in the tag tree

lw - Variable in class jj2000.j2k.util.MsgPrinter

The line width to use

lwfDecoder - Class in com.luratech.lwf

Stub of the Luratech LuraWave® Java decoder class.

lwfDecoder(InputStream, String, String) - Constructor for class com.luratech.lwf.lwfDecoder

LY - Static variable in class ome.units.UNITS

LY_RES_COMP_POS_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType

The bit stream is Layer/Resolution/Component/Position progressive : 0

lye - Variable in class jj2000.j2k.entropy.Progression

The index of the last layer.

lyepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

lyrSpec - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The layer specifications

LZO_OVERRUN - Static variable in class loci.formats.codec.LZOCodec

LZOCodec - Class in loci.formats.codec

This class implements LZO decompression.

LZOCodec() - Constructor for class loci.formats.codec.LZOCodec

lzss_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

general purpose LZW string table

LZW - Static variable in class loci.formats.in.ZeissCZIReader

LZWCodec - Class in loci.formats.codec

This is an optimized LZW codec for use with TIFF files.

LZWCodec() - Constructor for class loci.formats.codec.LZWCodec

LZWCompressor - Class in com.sun.media.imageioimpl.common

Modified from original LZWCompressor to change interface to passing a buffer of data to be compressed.

LZWCompressor(ImageOutputStream, int, boolean) - Constructor for class com.sun.media.imageioimpl.common.LZWCompressor

LZWStringTable - Class in com.sun.media.imageioimpl.common

General purpose LZW String Table.

LZWStringTable() - Constructor for class com.sun.media.imageioimpl.common.LZWStringTable

Constructor allocate memory for string store data

M

m - Variable in class jj2000.j2k.entropy.CodedCBlk

The vertical index of the code-block, within the subband.

m - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The vertical index of the code-block, within the subband

M - Static variable in class ome.units.UNITS

m_cellFrom - Variable in class loci.poi.hssf.util.RangeAddress

m_cellTo - Variable in class loci.poi.hssf.util.RangeAddress

m_sheetName - Variable in class loci.poi.hssf.util.RangeAddress

MAC_16_BIT_COLOR - Static variable in class loci.formats.in.OpenlabReader

MAC_16_COLORS - Static variable in class loci.formats.in.OpenlabReader

MAC_16_GREYS - Static variable in class loci.formats.in.OpenlabReader

MAC_1_BIT - Static variable in class loci.formats.in.OpenlabReader

Image types.

MAC_24_BIT_COLOR - Static variable in class loci.formats.in.OpenlabReader

MAC_256_COLORS - Static variable in class loci.formats.in.OpenlabReader

MAC_256_GREYS - Static variable in class loci.formats.in.OpenlabReader

MAC_4_GREYS - Static variable in class loci.formats.in.OpenlabReader

MAC_OS_X - Static variable in class loci.formats.gui.LegacyQTTools

macoutline - Static variable in class loci.poi.hssf.record.FontRecord

MACRO_IMAGE - Static variable in class loci.formats.in.CellSensReader

MacroFunctions - Class in loci.plugins.macro

Convenience class that simplifies implemention of ImageJ macro extensions.

MacroFunctions() - Constructor for class loci.plugins.macro.MacroFunctions

macros - Class in mdbtools.libmdb

macros() - Constructor for class mdbtools.libmdb.macros

macshadow - Static variable in class loci.poi.hssf.record.FontRecord

mag - Variable in class loci.formats.in.FluoviewReader

mag - Variable in class loci.formats.in.GatanReader

mag - Variable in class loci.formats.in.ND2Handler

MAG_MULTIPLIER - Static variable in class loci.formats.in.FEITiffReader

magbits - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The number of magnitude bits in the integer representation.

magbits - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The number of magnitude bits

MAGIC - Static variable in class loci.formats.in.AnalyzeReader

MAGIC - Static variable in class loci.formats.in.BioRadSCNReader

MAGIC - Static variable in class loci.formats.in.HitachiReader

MAGIC_BYTES - Static variable in class loci.formats.in.BioRadGelReader

MAGIC_NUMBER - Static variable in class loci.formats.in.OBFReader

MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants

MAGIC_NUMBER - Static variable in class ome.jxr.constants.File

MAGIC_STRING - Static variable in class loci.formats.in.HRDGDFReader

MAGIC_STRING - Static variable in class loci.formats.in.IMODReader

MAGIC_STRING - Static variable in class loci.formats.in.ImspectorReader

The header for each file contains this string.

MAGIC_STRING - Static variable in class loci.formats.in.KodakReader

MAGIC_STRING - Static variable in class loci.formats.in.MolecularImagingReader

MAGIC_STRING - Static variable in class loci.formats.in.SIFReader

MAGIC_STRING - Static variable in class loci.formats.in.SimplePCITiffReader

MAGNIFICATION - Static variable in class loci.formats.in.CellSensReader

magnification - Variable in class loci.formats.in.CellSensReader.Pyramid

magnification - Variable in class loci.formats.in.FEITiffReader

magnification - Variable in class loci.formats.in.FV1000Reader

magnification - Variable in class loci.formats.in.IvisionReader

magnification - Variable in class loci.formats.in.LIFReader

magnification - Variable in class loci.formats.in.NDPIReader

magnification - Variable in class loci.formats.in.NikonTiffReader

magnification - Variable in class loci.formats.in.OperettaReader.Plane

magnification - Variable in class loci.formats.in.SimplePCITiffReader

magnification - Variable in class loci.formats.in.SISReader

magnification - Variable in class loci.formats.in.SVSReader

magnification - Variable in class loci.formats.in.VolocityReader.Stack

magnification - Variable in class loci.formats.in.ZeissLSMReader.Recording

MAGNIFICATION_TAG - Static variable in class loci.formats.in.SlidebookTiffReader

magnitudes - Variable in class loci.formats.in.IM3Reader.Spectrum

magRefPass(DataBlk, MQDecoder, int, int[], boolean) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Performs the magnitude refinement pass on the specified data and bit-plane.

magRefPass(CBlkWTData, MQCoder, boolean, int, int[], int[], int[], int[], int[], int, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Performs the magnitude refinement pass on the specified data and bit-plane.

main(String[]) - Static method in class loci.common.ReflectedUniverse

Deprecated.

Allows exploration of a reflected universe in an interactive environment.

main(String[]) - Static method in class loci.formats.AxisGuesser

Method for testing pattern guessing logic.

main(String[]) - Static method in class loci.formats.codec.BitBuffer

Deprecated.

Testing method.

main(String[]) - Static method in class loci.formats.codec.BitWriter

Deprecated.

Tests the BitWriter class.

main(String[]) - Static method in class loci.formats.FilePattern

Method for testing file pattern logic.

main(String[]) - Static method in class loci.formats.gui.DataConverter

main(String[]) - Static method in class loci.formats.gui.ImageViewer

main(String[]) - Static method in class loci.formats.gui.XMLWindow

main(String[]) - Static method in class loci.formats.in.CellVoyagerReader

main(String[]) - Static method in class loci.formats.in.IM3Reader

Write a summary of each record to STDOUT

main(String[]) - Static method in class loci.formats.Memoizer

main(String[]) - Static method in class loci.formats.tools.AmiraParameters

main(String[]) - Static method in class loci.formats.tools.BioFormatsExtensionPrinter

main(String[]) - Static method in class loci.formats.tools.CacheConsole

Interactive interpreter for testing Bio-Formats caching implementation.

main(String[]) - Static method in class loci.formats.tools.EditTiffG

main(String[]) - Static method in class loci.formats.tools.MakeTestOmeTiff

main(String[]) - Static method in class loci.formats.tools.PrintDomains

main(String[]) - Static method in class loci.formats.tools.PrintFormatTable

main(String[]) - Static method in class loci.formats.tools.TiffComment

main(String[]) - Static method in class loci.formats.tools.UpgradeCheck

main(String[]) - Static method in class loci.formats.tools.XMLIndent

main(String[]) - Static method in class loci.formats.tools.XMLValidate

main(String[]) - Static method in class loci.plugins.About

main(String[]) - Static method in class loci.plugins.config.LociConfig

main(String[]) - Static method in class loci.plugins.in.Importer

Main method, for testing.

main(String[]) - Static method in class loci.poi.ddf.EscherDump

A simple test stub.

main(String[]) - Static method in class loci.poi.dev.RecordGenerator

The main program for the RecordGenerator class

main(String[]) - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

For the most basic testing.

main(String[]) - Static method in class loci.poi.hssf.dev.BiffViewer

Method main with 1 argument just run straight biffview against given file

main(String[]) - Static method in class loci.poi.hssf.dev.EFBiffViewer

main(String[]) - Static method in class loci.poi.hssf.dev.FormulaViewer

Method main pass me a filename and I'll try and parse the formulas from it

main(String[]) - Static method in class loci.poi.hssf.dev.HSSF

Method main Given 1 argument takes that as the filename, inputs it and dumps the cell values/types out to sys.out given 2 arguments where the second argument is the word "write" and the first is the filename - writes out a sample (test) spreadsheet (see public HSSF(String filename, boolean write)).

main - Variable in class loci.poi.hssf.record.PageBreakRecord.Break

main(String[]) - Static method in class loci.poi.hssf.record.RKRecord

Debugging main()

main(String[]) - Static method in class loci.poi.poifs.dev.POIFSViewer

Display the contents of multiple POIFS files

main(String[]) - Static method in class loci.poi.poifs.eventfilesystem.POIFSReader

read in files

main(String[]) - Static method in class loci.poi.poifs.filesystem.POIFSFileSystem

read in a file and write it back out again

main(String[]) - Static method in class loci.poi.util.DrawingDump

main(String[]) - Static method in class loci.poi.util.HexDump

main(String[]) - Static method in class loci.tests.ImageTester

main(String[]) - Static method in class loci.tests.IOTester

main(String[]) - Static method in class loci.tests.SingularityTest

main(String[]) - Static method in class loci.tests.ZipTester

main(String[]) - Static method in class mdbtools.dbengine.Tests

main(String[]) - Static method in class mdbtools.examples.mdb_tables

main(String[]) - Static method in class mdbtools.libmdb06util.mdbver

main(String[]) - Static method in class mdbtools.mdb_export

main(String[]) - Static method in class mdbtools.mdb_schema

main(String[]) - Static method in class mdbtools.mdb_tables

main(String[]) - Static method in class mdbtools.tests.ColumnTest

MAIN_PATH - Static variable in class ome.specification.SchemaResolver

MAIN_SEARCH_PATH - Static variable in class ome.specification.SchemaResolver

main_tagset - Variable in class loci.formats.in.ZeissTIFFHandler

mainDefDecompType - Variable in class jj2000.j2k.wavelet.WTDecompSpec

The main default decomposition

mainDefLevels - Variable in class jj2000.j2k.wavelet.WTDecompSpec

The main default number of decomposition levels

MainDialog - Class in loci.plugins.in

Bio-Formats Importer general options dialog box.

MainDialog(ImportProcess) - Constructor for class loci.plugins.in.MainDialog

Creates a general options dialog for the Bio-Formats Importer.

mainHeader - Variable in class jj2000.j2k.util.CodestreamManipulator

The main header

mainHeadLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Length of main header

mainHeadOff - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The offset of the main header in the input stream

majorVersion - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

MAKE - Static variable in class loci.formats.tiff.IFD

make24Bits(Object, int, int, boolean, boolean) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to a 3 x (width * height) byte array.

make24Bits(Object, int, int, boolean, boolean, Double, Double) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to a 3 x (width * height) byte array.

make24Bits(Object, int, int, boolean) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to an int array, i.e.

make24Bits(Object, int, int, boolean, Double, Double) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to an int array, i.e.

makeBitArray(int, int) - Static method in class loci.formats.gui.SignedColorModel

makeBitArray(int, int) - Static method in class loci.formats.gui.UnsignedIntColorModel

makeBlack(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

force a node (if it exists) black

makeBuffered(Image) - Static method in class loci.formats.gui.AWTImageTools

Creates a buffered image from the given AWT image object.

makeBuffered(Image, ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Creates a buffered image possessing the given color model, from the specified AWT image object.

makeBufferedImageReader(IFormatReader) - Static method in class loci.formats.gui.BufferedImageReader

Converts the given reader into a BufferedImageReader, wrapping if needed.

makeBufferedImageWriter(IFormatWriter) - Static method in class loci.formats.gui.BufferedImageWriter

Converts the given writer into a BufferedImageWriter, wrapping if needed.

makeChannelFiller(IFormatReader) - Static method in class loci.formats.ChannelFiller

Converts the given reader into a ChannelFiller, wrapping if needed.

makeChannelMerger(IFormatReader) - Static method in class loci.formats.ChannelMerger

Converts the given reader into a ChannelMerger, wrapping if needed.

makeChannelSeparator(IFormatReader) - Static method in class loci.formats.ChannelSeparator

Converts the given reader into a ChannelSeparator, wrapping if needed.

makeColorModel(int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets a color model for the given number of color components.

makeColorSpace(int) - Static method in class loci.formats.gui.AWTImageTools

Gets a color space for the given number of color components.

makeComboFilter(FileFilter[]) - Static method in class loci.formats.gui.GUITools

Creates an "All supported file types" combo filter encompassing all of the given filters.

makeCompactGrid(Container, int, int, int, int, int, int) - Static method in class loci.plugins.config.SpringUtilities

Aligns the first rows * cols components of parent in a grid.

makeCompatible(BufferedImage, GraphicsConfiguration) - Static method in class loci.formats.gui.AWTImageTools

Creates a buffered image compatible with the given graphics configuration, using the given buffered image as a source.

makeDataArray(byte[], int, boolean, boolean) - Static method in class loci.common.DataTools

Convert a byte array to the appropriate 1D primitive type array.

makeDataArray2D(byte[], int, boolean, boolean, int) - Static method in class loci.common.DataTools

Convert a byte array to the appropriate 2D primitive type array.

makeDimensionSwapper(IFormatReader) - Static method in class loci.formats.DimensionSwapper

Converts the given reader into a DimensionSwapper, wrapping if needed.

makeDimensionTable() - Static method in class loci.formats.in.LeicaReader

makeDummySlider() - Static method in class loci.plugins.util.DataBrowser

makeEmptySmallDocumentBlock(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

makeFileList() - Method in class loci.formats.in.DicomReader

makeFilterMetadata() - Method in class loci.formats.FormatReader

Return a properly configured loci.formats.meta.FilterMetadata.

makeGrid(Container, int, int, int, int, int, int) - Static method in class loci.plugins.config.SpringUtilities

Aligns the first rows * cols components of parent in a grid.

makeHeavyPanel(Component) - Static method in class loci.plugins.util.DataBrowser

Makes AWT play nicely with Swing components.

makeImage(byte[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel byte data.

makeImage(short[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel short data.

makeImage(int[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel int data.

makeImage(float[], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel float data.

makeImage(double[], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel double data.

makeImage(byte[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given byte data.

makeImage(short[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given short data.

makeImage(int[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given int data.

makeImage(float[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given float data.

makeImage(double[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given double data.

makeImage(byte[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given byte data.

makeImage(short[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given short data.

makeImage(int[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given int data.

makeImage(float[][], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-precision floating point data.

makeImage(double[][], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given double-precision floating point data.

makeImage(byte[], boolean, MetadataRetrieve, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given raw byte array, obtaining the dimensional parameters from the specified metadata object.

makeImage(byte[], int, int, int, boolean, int, boolean, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given raw byte array, performing any necessary type conversions.

makeImage(byte[][], int, int, int, boolean, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given raw byte array, performing any necessary type conversions.

makeImage(String) - Method in class loci.formats.gui.PreviewPane

Creates a blank image with the given message painted on top (e.g., a loading or error message), matching the size of the active reader's thumbnails.

makeImageName(int) - Method in class loci.formats.in.MetamorphReader

Create an appropriate name for the given series.

makeImageProcessorReader(IFormatReader) - Static method in class loci.plugins.util.ImageProcessorReader

Converts the given reader into a ImageProcessorReader, wrapping if needed.

makeImageReader() - Static method in class loci.plugins.util.LociPrefs

Creates an image reader according to the current configuration settings, including which format readers are currently enabled, as well as format-specific configuration settings.

makeJTree(Document) - Static method in class loci.formats.gui.XMLCellRenderer

Constructs a Swing JTree that displays the given XML DOM document.

makeLabel(String, boolean) - Method in class loci.plugins.config.ConfigWindow

makeLabel(String, int, int) - Method in class loci.plugins.in.ColorDialog

makeList(DefaultListModel) - Method in class loci.plugins.config.ConfigWindow

makeLUT(int, int) - Method in class loci.plugins.in.Colorizer

makeLUT(Color) - Method in class loci.plugins.in.Colorizer

makeLUTs(ColorModel[], boolean) - Method in class loci.plugins.in.Colorizer

makeLUTs(int) - Method in class loci.plugins.in.Colorizer

makeMaps() - Method in class loci.common.CBZip2InputStream

makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This function generates the ROI mask for one tile-component.

makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

This function generates the ROI mask for the entire tile.

makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This function generates the ROI mask for the entire tile.

makeMinMaxCalculator(IFormatReader) - Static method in class loci.formats.MinMaxCalculator

Converts the given reader into a MinMaxCalculator, wrapping if needed.

makeModuloElement(Document) - Method in class loci.formats.meta.ModuloAnnotation

Construct a DOM element for this annotation using the given Document as the root.

makeOmeTiff(String...) - Method in class loci.formats.tools.MakeTestOmeTiff

makeOmeTiff(String, CoreMetadata) - Method in class loci.formats.tools.MakeTestOmeTiff

makeOriginalMetadata(Document) - Method in class loci.formats.meta.OriginalMetadataAnnotation

Create a DOM element for this annotation with the given document as the parent.

makePatterns() - Static method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.BinningEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.CompressionEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.CorrectionEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.FillRuleEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.FontStyleEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.ImmersionEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.LineCapEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.MarkerEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.MediumEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.PulseEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

makePatterns() - Static method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

makePixelTypes() - Static method in class loci.formats.FormatTools

MAKER_NOTE - Static variable in class loci.formats.tiff.IFD

MAKER_WHITE_BALANCE - Static variable in class loci.formats.in.NikonReader

makeRed(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

force a node (if it exists) red

makeRGBImage(byte[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

makeRGBImage(byte[][], int, int) - Static method in class loci.formats.gui.AWTImageTools

makerNoteOffset - Variable in class loci.formats.in.NikonReader

Offset to the Nikon Maker Note.

makeSamples() - Method in class loci.formats.tools.MakeTestOmeTiff

makeSaneDimensionOrder(String) - Static method in class loci.formats.MetadataTools

Adjusts the given dimension order as needed so that it contains exactly one of each of the following characters: 'X', 'Y', 'Z', 'C', 'T'.

makeSigned(byte[]) - Static method in class loci.common.DataTools

makeSigned(short[]) - Static method in class loci.common.DataTools

makeSigned(int[]) - Static method in class loci.common.DataTools

makeSplitPane(JList, JPanel) - Method in class loci.plugins.config.ConfigWindow

makeStack(ImageStack) - Method in class loci.plugins.Slicer

Returns a new ImageStack using the given ImageStack as a template.

makeSubstutionStream(String, String) - Method in class ome.specification.SchemaResolver

Creates the LSInput object from the resource path

MakeTestOmeTiff - Class in loci.formats.tools

Creates sample OME-TIFF datasets according to the given parameters.

MakeTestOmeTiff() - Constructor for class loci.formats.tools.MakeTestOmeTiff

MakeTestOmeTiff.TextLine - Class in loci.formats.tools

MakeTestOmeTiff.TextLine(String, Font, int, int) - Constructor for class loci.formats.tools.MakeTestOmeTiff.TextLine

makeTextField() - Static method in class loci.plugins.config.ConfigWindow

makeTileStitcher(IFormatReader) - Static method in class loci.formats.TileStitcher

Converts the given reader into a TileStitcher, wrapping if needed.

makeTreeNode(Node) - Static method in class loci.formats.gui.XMLCellRenderer

Recursively builds JTree node structure from DOM node structure.

makeUnsigned(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Converts the given BufferedImage into an image with unsigned pixel data.

makeupCodes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Black and white make-up code table.

makeupCodesBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Make-up codes for black runs.

makeupCodesWhite - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Make-up codes for white runs.

makeValidIFD(IFD, int, int) - Method in class loci.formats.tiff.TiffSaver

Makes a valid IFD.

MANUAL - Static variable in class loci.poi.hssf.record.CalcModeRecord

manually calculate formulas (0)

MANUFACTURER - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

manufacturer - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

manufacturer - Variable in class ome.xml.model.ManufacturerSpec

ManufacturerSpec - Class in ome.xml.model

ManufacturerSpec() - Constructor for class ome.xml.model.ManufacturerSpec

Default constructor.

ManufacturerSpec(Element, OMEModel) - Constructor for class ome.xml.model.ManufacturerSpec

Constructs ManufacturerSpec recursively from an XML DOM tree.

ManufacturerSpec(ManufacturerSpec) - Constructor for class ome.xml.model.ManufacturerSpec

Copy constructor.

manufactureStrings(int, RecordInputStream) - Method in class loci.poi.hssf.record.SSTDeserializer

This is the starting point where strings are constructed.

map - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

map - Variable in class loci.formats.in.EPSReader

map - Variable in class loci.formats.tools.AmiraParameters

map - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

map - Variable in class loci.poi.hssf.util.SheetReferences

map - Variable in class ome.xml.model.GenericExcitationSource

map - Variable in class ome.xml.model.ImagingEnvironment

Map - Class in ome.xml.model

Map() - Constructor for class ome.xml.model.Map

Default constructor.

Map(Element, OMEModel) - Constructor for class ome.xml.model.Map

Constructs Map recursively from an XML DOM tree.

Map(Map) - Constructor for class ome.xml.model.Map

Copy constructor.

Map(List<MapPair>) - Constructor for class ome.xml.model.Map

map_base_pg - Variable in class mdbtools.libmdb.MdbTableDef

map_sz - Variable in class mdbtools.libmdb.MdbFile

map_sz - Variable in class mdbtools.libmdb.MdbTableDef

MapAnnotation - Class in ome.xml.model

MapAnnotation() - Constructor for class ome.xml.model.MapAnnotation

Default constructor.

MapAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.MapAnnotation

Constructs MapAnnotation recursively from an XML DOM tree.

MapAnnotation(MapAnnotation) - Constructor for class ome.xml.model.MapAnnotation

Copy constructor.

mapAnnotations - Variable in class ome.xml.model.StructuredAnnotations

mapFile(String, IRandomAccess) - Static method in class loci.common.Location

Maps the given id to the given IRandomAccess object.

mapFile(String) - Static method in class loci.tests.testng.TestTools

Map the given file into memory.

mapId(String, String) - Static method in class loci.common.Location

Maps the given id to an actual filename on disk.

mapMode - Variable in class loci.common.NIOByteBufferProvider

If we are to use memory mapped I/O, the map mode.

mapMode - Variable in class loci.common.NIOFileHandle

The default map mode for the file.

MAPNAMESPACE - Static variable in class ome.xml.model.MapPairs

mapOIBFiles() - Method in class loci.formats.in.FV1000Reader

MapPair - Class in ome.xml.model

Simple string/string container.

MapPair(String, String) - Constructor for class ome.xml.model.MapPair

Default constructor.

MapPair(MapPair) - Constructor for class ome.xml.model.MapPair

Copy constructor.

MapPairs - Class in ome.xml.model

MapPairs() - Constructor for class ome.xml.model.MapPairs

Default constructor.

MapPairs(List<MapPair>) - Constructor for class ome.xml.model.MapPairs

Copies List argument

MapPairs(MapPairs) - Constructor for class ome.xml.model.MapPairs

Copy constructor.

MapPairs(Element, OMEModel) - Constructor for class ome.xml.model.MapPairs

Constructs MapPairs recursively from an XML DOM tree.

mappedBuffer - Variable in class com.sun.media.imageio.stream.FileChannelImageInputStream

A memory mapping of all or part of the channel.

mappedFiles - Variable in class loci.formats.in.ZipReader

mappedPos - Variable in class com.sun.media.imageio.stream.FileChannelImageInputStream

The stream position of the mapping.

mappedUpperBound - Variable in class com.sun.media.imageio.stream.FileChannelImageInputStream

The stream position least upper bound of the mapping.

mapper - Variable in class com.sun.media.imageio.stream.SegmentedImageInputStream

maps - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

mapServer(String, String) - Static method in class loci.formats.in.FlexReader

Map the server named 'alias' to the path 'realName'.

mapServer(String, String[]) - Static method in class loci.formats.in.FlexReader

Map the server named 'alias' to the paths in 'realNames'.

mapServersFromConfigurationFile(String) - Static method in class loci.formats.in.FlexReader

Read a configuration file with lines of the form: <server alias>=<real server name> and call mapServer(String, String) accordingly.

mapToSourceX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

mapToSourceX(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

mapToSourceY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

mapToSourceY(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

Margin - Interface in loci.poi.hssf.record

The margin interface is a parent used to define left, right, top and bottom margins.

marginBottom - Variable in class loci.poi.hssf.usermodel.HSSFTextbox

marginLeft - Variable in class loci.poi.hssf.usermodel.HSSFTextbox

marginRight - Variable in class loci.poi.hssf.usermodel.HSSFTextbox

margins - Variable in class loci.poi.hssf.model.Sheet

marginTop - Variable in class loci.poi.hssf.usermodel.HSSFTextbox

mark() - Method in class com.sun.media.imageio.stream.RawImageInputStream

mark(int) - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

mark(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

mark(int) - Method in class loci.common.NIOInputStream

mark(int) - Method in class loci.common.RandomAccessInputStream

mark - Variable in class loci.common.StreamHandle

Marked position within the stream.

mark(int) - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Marks the current position in this input stream.

mark(int) - Method in class loci.poi.util.BlockingInputStream

markedPos - Variable in class loci.common.RandomAccessInputStream

MARKER - Static variable in class loci.formats.in.ZeissLMSReader

Marker - Enum in ome.xml.model.enums

Marker(String) - Constructor for enum ome.xml.model.enums.Marker

MARKER_0 - Static variable in class loci.formats.in.TillVisionReader

MARKER_1 - Static variable in class loci.formats.in.TillVisionReader

MARKER_2 - Static variable in class loci.formats.in.TillVisionReader

MARKER_3 - Static variable in class loci.formats.in.TillVisionReader

MARKER_TAG - Static variable in class loci.formats.in.NDPIReader

markerEnd - Variable in class ome.xml.model.Line

markerEnd - Variable in class ome.xml.model.Polyline

MarkerEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Marker.

MarkerEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MarkerEnumHandler

markerFound - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

Flag indicating if a marker has been found

Markers - Interface in jj2000.j2k.codestream

This interface defines the values of the different markers in the JPEG 2000 codestream.

markerStart - Variable in class ome.xml.model.Line

markerStart - Variable in class ome.xml.model.Polyline

markManager() - Method in class loci.common.StreamHandle

Reset the marked position, if necessary.

markSupported() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

markSupported() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

markSupported() - Method in class loci.common.NIOInputStream

markSupported() - Method in class loci.common.RandomAccessInputStream

markSupported() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Tests if this input stream supports the mark and reset methods.

markSupported() - Method in class loci.poi.util.BlockingInputStream

MarkUnsupportedException - Exception in loci.poi.hpsf

This exception is thrown if an InputStream does not support the InputStream.mark(int) operation.

MarkUnsupportedException() - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

MarkUnsupportedException(String) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

MarkUnsupportedException(Throwable) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

MarkUnsupportedException(String, Throwable) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

mask - Variable in class ome.xml.model.BinData

Mask - Class in ome.xml.model

Mask() - Constructor for class ome.xml.model.Mask

Default constructor.

Mask(Element, OMEModel) - Constructor for class ome.xml.model.Mask

Constructs Mask recursively from an XML DOM tree.

Mask(Mask) - Constructor for class ome.xml.model.Mask

Copy constructor.

maskLineHigh - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

The High frequency part of a mask line

maskLineLow - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

The low frequency part of a mask line

maskPGM - Variable in class jj2000.j2k.roi.encoder.ROI

ImgReaderPGM object with the arbrtrary ROI

masterClock - Variable in class loci.formats.in.SDTInfo

Use or not Master Clock (SPC140 multi-module).

Match(char) - Method in class loci.poi.hssf.model.FormulaParser

Match a Specific Input Character

matchFilename(String) - Method in class loci.formats.in.CellomicsReader

matchFiles(String[], NumberFilter) - Static method in class loci.formats.FilePattern

Filters the given list of filenames according to the specified filter.

matchFont(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics

matchOptionalFormatting(Number, String, StringBuffer) - Static method in class loci.poi.util.StringUtil

MathUtil - Class in jj2000.j2k.util

This class contains a collection of utility methods fro mathematical operations.

MathUtil() - Constructor for class jj2000.j2k.util.MathUtil

matrix - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling

max - Variable in class loci.formats.gui.SignedColorModel

max(double) - Method in class loci.plugins.util.RecordedImageProcessor

Max - Class in mdbtools.dbengine.functions

Max() - Constructor for class mdbtools.dbengine.functions.Max

max - Variable in class mdbtools.dbengine.functions.Max

MAX_ALPHA_SIZE - Static variable in class loci.common.CBZip2InputStream

MAX_APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD

MAX_BLOCK_SIZE - Static variable in class loci.formats.services.POIServiceImpl

MAX_BUCKETS - Static variable in class loci.poi.hssf.record.ExtSSTRecord

MAX_CB_AREA - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The maximum code-block area (width x height).

MAX_CB_DIM - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The maximum code-block dimension.

MAX_CODE_LEN - Static variable in class loci.common.CBZip2InputStream

MAX_COMP_BITDEPTH - Static variable in interface jj2000.j2k.codestream.Markers

The maximum number of component bitdepth

MAX_COMPONENTS - Static variable in class loci.plugins.in.SeriesDialog

MAX_DATA_SIZE - Static variable in class loci.poi.hssf.record.DrawingGroupRecord

MAX_DATA_SPACE - Static variable in class loci.poi.hssf.record.SSTRecord

how much data can we stuff into an SST record? That would be _max minus the standard SST record overhead

MAX_DATATYPE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

The numerically largest constant representing a TIFF data type.

MAX_EL_COPYING - Static variable in class jj2000.j2k.util.ArrayUtil

The maximum array size to do element by element copying, larger arrays are copyied in a n optimized way.

MAX_HEADER_SIZE - Static variable in class loci.formats.in.QuesantReader

MAX_HEIGHT - Static variable in class loci.poi.hssf.util.RangeAddress

MAX_INT - Static variable in class jj2000.j2k.IntegerSpec

The largest value of type int

MAX_LOW_FIELD_TAG_NUM - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

The largest low-valued tag number in the TIFF 6.0 specification.

MAX_LPPM - Static variable in interface jj2000.j2k.codestream.Markers

Maximum length of PPM marker segment

MAX_LPPT - Static variable in interface jj2000.j2k.codestream.Markers

Maximum length of PPT marker segment

MAX_OVERHEAD - Static variable in class loci.common.RandomAccessInputStream

Maximum size of the buffer used by the DataInputStream.

MAX_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy

MAX_READERS - Static variable in class loci.formats.FileStitcher

MAX_RECORD_DATA_SIZE - Static variable in class loci.poi.hssf.record.RecordInputStream

Maximum size of a single record (minus the 4 byte header) without a continue

MAX_RECORD_SIZE - Static variable in class loci.poi.hssf.record.DrawingGroupRecord

MAX_RECORD_SIZE - Static variable in class loci.poi.hssf.record.SSTRecord

how big can an SST record be? As big as any record can be: 8228 bytes

MAX_ROW_NUMBER - Static variable in class loci.poi.hssf.record.formula.ReferencePtg

MAX_ROW_NUMBER - Static variable in class loci.poi.hssf.record.RowRecord

The maximum row number that excel can handle (zero bazed) ie 65536 rows is max number of rows.

MAX_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD

MAX_SEARCH_SIZE - Static variable in class loci.common.NIOInputStream

Maximum number of bytes to search when searching through the stream.

MAX_SEARCH_SIZE - Static variable in class loci.common.RandomAccessInputStream

Maximum number of bytes to search when searching through the stream.

MAX_SELECTORS - Static variable in class loci.common.CBZip2InputStream

MAX_SERIES_THUMBS - Static variable in class loci.plugins.in.SeriesDialog

MAX_SERIES_TOGGLES - Static variable in class loci.plugins.in.SeriesDialog

MAX_SIZE - Static variable in class loci.formats.in.HamamatsuVMSReader

MAX_SIZE - Static variable in class loci.formats.in.JPEGReader

MAX_SIZE - Static variable in class loci.formats.in.NDPIReader

MAX_SIZE - Static variable in class ome.jxr.constants.File

MAX_STACK_SIZE - Static variable in class loci.formats.in.GIFReader

Maximum buffer size.

MAX_TPSOT - Static variable in class jj2000.j2k.util.CodestreamManipulator

The maximum number of a tile part index (TPsot)

MAX_TRIES - Static variable in class loci.plugins.util.LuraWave

maxAdcRate - Variable in class loci.formats.in.SDTInfo

MAXBITS - Static variable in class com.sun.media.imageioimpl.common.LZWStringTable

maxByte - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

The maximum number of bytes that can be read from the buffer

maxBytes - Variable in class jj2000.j2k.codestream.writer.CodestreamWriter

The maximum number of bytes that can be written to the bit stream

maxBytes - Variable in class jj2000.j2k.entropy.encoder.EBCOTLayer

This is the maximum number of bytes that should be allocated for this and previous layers.

maxBytes - Variable in class loci.formats.codec.CodecOptions

If compressing, this is the maximum number of raw bytes to compress.

maxCB - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Maximum number of codeblocks to read before ncb quit condition is reached

maxCBlkHeight - Variable in class jj2000.j2k.entropy.CBlkSizeSpec

The maximum code-block height

maxCBlkWidth - Variable in class jj2000.j2k.entropy.CBlkSizeSpec

The maximum code-block width

maxCfdRate - Variable in class loci.formats.in.SDTInfo

(-1.0 - not set).

maxChildren - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

maxCompHeight - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

Maximum height among all components

maxCompWidth - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

Maximum width among all components

maxDepth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

maxformatid - Variable in class loci.poi.hssf.model.Workbook

MAXIMAL_NUMBER_OF_DIMENSIONS - Static variable in class loci.formats.in.OBFReader

maxImgRes - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The maximum available image resolution level

maximum - Variable in class loci.common.StatusEvent

Current progress maximum.

maximumFieldCount - Variable in class ome.xml.model.PlateAcquisition

maximumReadOffset - Variable in class loci.formats.in.JPEG2000MetadataParser

Maximum read offset within in the stream.

maxInten - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Maxiumum intensity.

MAXLEVEL - Static variable in class com.sun.media.imageioimpl.common.PaletteBuilder

maximum of tree depth

maxMagBits - Variable in class jj2000.j2k.roi.encoder.ROIScaler

The maximum number of magnitude bit-planes in any subband.

maxNodes - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

maxOffsetIndex - Variable in class loci.formats.in.AmiraReader.HxRLE

maxPixelRange - Variable in class loci.formats.in.DicomReader

maxPos - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

MAXPRECISION - Static variable in class mdbtools.libmdb.Money

maxSample - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

The max value for the encoded/decoded image.

maxSampleSize - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

Maximum number of bits per sample (not in metadata).

MaxShiftSpec - Class in jj2000.j2k.roi

This class contains the maxshift scaling value for each tile-component.

MaxShiftSpec(int, int, byte, String) - Constructor for class jj2000.j2k.roi.MaxShiftSpec

Constructs a 'ModuleSpec' object, initializing all the components and tiles to the 'SPEC_DEF' spec type, for the specified number of components and tiles.

maxsize - Variable in class jj2000.j2k.util.ISRandomAccessIO

maxSlope - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The maximum slope accross all code-blocks and truncation points.

MAXSTR - Static variable in class com.sun.media.imageioimpl.common.LZWStringTable

maxSyncRate - Variable in class loci.formats.in.SDTInfo

Maximum rates during the measurement.

maxTacRate - Variable in class loci.formats.in.SDTInfo

maxTP - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

maxtp - Variable in class jj2000.j2k.util.CodestreamManipulator

The maximum number of tile parts in any tile

maxValue - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Maximum pixel value.

maxValue - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

maxValue - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

maxValue() - Method in class loci.plugins.util.RecordedImageProcessor

maxValues - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

maxX - Variable in class loci.formats.in.CellH5Reader

maxX - Variable in class loci.formats.in.ImarisHDFReader

maxXTile - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

maxY - Variable in class loci.formats.in.CellH5Reader

maxY - Variable in class loci.formats.in.ImarisHDFReader

maxYTile - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

maxZ - Variable in class loci.formats.in.CellH5Reader

maxZ - Variable in class loci.formats.in.ImarisHDFReader

MBAR - Static variable in class ome.units.UNITS

mcsPoints - Variable in class loci.formats.in.SDTInfo

No of MCS values.

mcstaPoints - Variable in class loci.formats.in.SDTInfo

Number of MCS_TA points.

mcsTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for MCS histogram.

mcuHeight - Static variable in class org.libjpegturbo.turbojpeg.TJ

mcuWidth - Static variable in class org.libjpegturbo.turbojpeg.TJ

MD5 - Static variable in class loci.tests.testng.Configuration

md5(byte[], int, int, int, int, int, int, int) - Static method in class loci.tests.testng.TestTools

Calculate the MD5 of a byte array.

md5(byte[], int, int) - Static method in class loci.tests.testng.TestTools

Calculate the MD5 of a byte array.

md5(byte[]) - Static method in class loci.tests.testng.TestTools

Calculate the MD5 of a byte array.

MD_FILE_UNITS - Static variable in class loci.formats.in.GelReader

MD_FILETAG - Static variable in class loci.formats.in.GelReader

MD_LAB_NAME - Static variable in class loci.formats.in.GelReader

MD_PREP_DATE - Static variable in class loci.formats.in.GelReader

MD_PREP_TIME - Static variable in class loci.formats.in.GelReader

MD_SAMPLE_INFO - Static variable in class loci.formats.in.GelReader

MD_SCALE_PIXEL - Static variable in class loci.formats.in.GelReader

mdb - Variable in class loci.formats.services.MDBServiceImpl

mdb - Variable in class mdbtools.libmdb.MdbCatalogEntry

mdb_access_types - Static variable in class mdbtools.libmdb.backend

mdb_add_sarg(MdbColumn, MdbSarg) - Static method in class mdbtools.libmdb.Sargs

mdb_alloc_catalog(MdbHandle) - Static method in class mdbtools.libmdb.mem

mdb_alloc_file() - Static method in class mdbtools.libmdb.mem

mdb_alloc_handle() - Static method in class mdbtools.libmdb.mem

mdb_alloc_tabledef(MdbCatalogEntry) - Static method in class mdbtools.libmdb.mem

MDB_ANY - Static variable in class mdbtools.libmdb.Constants

mdb_backends - Static variable in class mdbtools.libmdb.backend

mdb_bind_column(MdbTableDef, int, Holder) - Static method in class mdbtools.libmdb.Data

MDB_BIND_SIZE - Static variable in class mdbtools.libmdb.Constants

MDB_BOOL - Static variable in class mdbtools.libmdb.Constants

MDB_BYTE - Static variable in class mdbtools.libmdb.Constants

MDB_CATALOG_PG - Static variable in class mdbtools.libmdb.Constants

mdb_col_to_string(MdbHandle, int, int, int) - Static method in class mdbtools.libmdb.Data

mdb_copy_ole(MdbHandle, Holder, int, int) - Static method in class mdbtools.libmdb.Data

MDB_DATABASE_PROPERTY - Static variable in class mdbtools.libmdb.Constants

MDB_DOUBLE - Static variable in class mdbtools.libmdb.Constants

MDB_EQUAL - Static variable in class mdbtools.libmdb.Constants

mdb_export - Class in mdbtools

mdb_export() - Constructor for class mdbtools.mdb_export

mdb_fetch_row(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_find_end_of_row(MdbHandle, int) - Static method in class mdbtools.libmdb.Data

MDB_FLOAT - Static variable in class mdbtools.libmdb.Constants

MDB_FORM - Static variable in class mdbtools.libmdb.Constants

mdb_free_catalog(MdbHandle) - Static method in class mdbtools.libmdb.mem

mdb_free_file(MdbFile) - Static method in class mdbtools.libmdb.mem

mdb_free_handle(MdbHandle) - Static method in class mdbtools.libmdb.mem

mdb_get_byte(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_coltype_string(MdbBackend, int) - Static method in class mdbtools.libmdb.backend

mdb_get_double(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_int16(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_int24(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_int32(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_single(MdbHandle, int) - Static method in class mdbtools.libmdb.file

MDB_GT - Static variable in class mdbtools.libmdb.Constants

MDB_GTEQ - Static variable in class mdbtools.libmdb.Constants

mdb_init() - Static method in class mdbtools.libmdb.mem

mdb_init_backends() - Static method in class mdbtools.libmdb.backend

MDB_INT - Static variable in class mdbtools.libmdb.Constants

mdb_is_fixed_col(MdbColumn) - Static method in class mdbtools.libmdb.Data

mdb_is_null(byte[], int) - Static method in class mdbtools.libmdb.Data

MDB_ISNULL - Static variable in class mdbtools.libmdb.Constants

MDB_LIKE - Static variable in class mdbtools.libmdb.Constants

MDB_LINKED_TABLE - Static variable in class mdbtools.libmdb.Constants

MDB_LONGINT - Static variable in class mdbtools.libmdb.Constants

MDB_LT - Static variable in class mdbtools.libmdb.Constants

MDB_LTEQ - Static variable in class mdbtools.libmdb.Constants

MDB_MACRO - Static variable in class mdbtools.libmdb.Constants

MDB_MAX_COLS - Static variable in class mdbtools.libmdb.Constants

MDB_MAX_IDX_COLS - Static variable in class mdbtools.libmdb.Constants

MDB_MAX_OBJ_NAME - Static variable in class mdbtools.libmdb.Constants

MDB_MEMO - Static variable in class mdbtools.libmdb.Constants

MDB_MEMO_OVERHEAD - Static variable in class mdbtools.libmdb.Constants

mdb_memo_to_string(MdbHandle, int, int) - Static method in class mdbtools.libmdb.Data

MDB_MODULE - Static variable in class mdbtools.libmdb.Constants

MDB_MONEY - Static variable in class mdbtools.libmdb.Constants

mdb_money_to_string(MdbHandle, int) - Static method in class mdbtools.libmdb.Money

MDB_NOTNULL - Static variable in class mdbtools.libmdb.Constants

mdb_num_to_string(MdbHandle, int, int, int, int) - Static method in class mdbtools.libmdb.Data

MDB_NUMERIC - Static variable in class mdbtools.libmdb.Constants

MDB_OLE - Static variable in class mdbtools.libmdb.Constants

mdb_open(RandomAccess) - Static method in class mdbtools.libmdb.file

mdb_oracle_types - Static variable in class mdbtools.libmdb.backend

MDB_PGSIZE - Static variable in class mdbtools.libmdb.Constants

MDB_PGSIZE - Static variable in class mdbtools.libmdb.MdbHandle

mdb_postgres_types - Static variable in class mdbtools.libmdb.backend

MDB_QUERY - Static variable in class mdbtools.libmdb.Constants

mdb_read_alt_pg(MdbHandle, long) - Static method in class mdbtools.libmdb.file

mdb_read_catalog(MdbHandle, int) - Static method in class mdbtools.libmdb.Catalog

mdb_read_columns(MdbTableDef) - Static method in class mdbtools.libmdb.Table

mdb_read_next_dpg(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_read_next_dpg_by_map0(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_read_next_dpg_by_map1(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_read_pg(MdbHandle, long) - Static method in class mdbtools.libmdb.file

mdb_read a wrapper for read that bails if anything is wrong

mdb_read_row(MdbTableDef, int) - Static method in class mdbtools.libmdb.Data

mdb_read_table(MdbCatalogEntry) - Static method in class mdbtools.libmdb.Table

mdb_register_backend(MdbBackend, String) - Static method in class mdbtools.libmdb.backend

MDB_RELATIONSHIP - Static variable in class mdbtools.libmdb.Constants

MDB_REPID - Static variable in class mdbtools.libmdb.Constants

MDB_REPORT - Static variable in class mdbtools.libmdb.Constants

mdb_rewind_table(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_schema - Class in mdbtools

mdb_schema() - Constructor for class mdbtools.mdb_schema

MDB_SDATETIME - Static variable in class mdbtools.libmdb.Constants

mdb_set_default_backend(MdbHandle, String) - Static method in class mdbtools.libmdb.backend

MDB_SUFFIX - Static variable in class loci.formats.in.ZeissLSMReader

mdb_swap_pgbuf(MdbHandle) - Static method in class mdbtools.libmdb.file

mdb_sybase_types - Static variable in class mdbtools.libmdb.backend

MDB_SYSTEM_TABLE - Static variable in class mdbtools.libmdb.Constants

MDB_TABLE - Static variable in class mdbtools.libmdb.Constants

mdb_tables - Class in mdbtools.examples

mdb_tables() - Constructor for class mdbtools.examples.mdb_tables

mdb_tables - Class in mdbtools

mdb_tables() - Constructor for class mdbtools.mdb_tables

mdb_test_int(MdbSarg, int) - Static method in class mdbtools.libmdb.Sargs

mdb_test_sarg(MdbHandle, MdbColumn, MdbSarg, int, int) - Static method in class mdbtools.libmdb.Sargs

mdb_test_sargs(MdbHandle, MdbColumn, int, int) - Static method in class mdbtools.libmdb.Sargs

MDB_TEXT - Static variable in class mdbtools.libmdb.Constants

MDB_UNKNOWN_09 - Static variable in class mdbtools.libmdb.Constants

MDB_UNKNOWN_0A - Static variable in class mdbtools.libmdb.Constants

MDB_VER_JET3 - Static variable in class mdbtools.libmdb.macros

MDB_VER_JET4 - Static variable in class mdbtools.libmdb.macros

mdb_xfer_bound_bool(MdbHandle, MdbColumn, boolean) - Static method in class mdbtools.libmdb.Data

mdb_xfer_bound_data(MdbHandle, int, MdbColumn, int) - Static method in class mdbtools.libmdb.Data

mdb_xfer_bound_ole(MdbHandle, int, MdbColumn, int) - Static method in class mdbtools.libmdb.Data

MdbAny - Class in mdbtools.libmdb

MdbAny() - Constructor for class mdbtools.libmdb.MdbAny

MdbBackend - Class in mdbtools.libmdb

MdbBackend() - Constructor for class mdbtools.libmdb.MdbBackend

MdbCatalogEntry - Class in mdbtools.libmdb

MdbCatalogEntry() - Constructor for class mdbtools.libmdb.MdbCatalogEntry

MdbColumn - Class in mdbtools.libmdb

MdbColumn() - Constructor for class mdbtools.libmdb.MdbColumn

MdbFile - Class in mdbtools.libmdb

MdbFile() - Constructor for class mdbtools.libmdb.MdbFile

MdbFormatConstants - Class in mdbtools.libmdb

MdbFormatConstants() - Constructor for class mdbtools.libmdb.MdbFormatConstants

MdbHandle - Class in mdbtools.libmdb

MdbHandle() - Constructor for class mdbtools.libmdb.MdbHandle

MdbJet3Constants - Static variable in class mdbtools.libmdb.MdbFormatConstants

MdbJet4Constants - Static variable in class mdbtools.libmdb.MdbFormatConstants

MdbSarg - Class in mdbtools.libmdb

MdbSarg() - Constructor for class mdbtools.libmdb.MdbSarg

MDBService - Interface in loci.formats.services

Interface defining methods for parsing MDB database files.

MDBServiceImpl - Class in loci.formats.services

Implementation of MDBService for parsing MDB database files.

MDBServiceImpl() - Constructor for class loci.formats.services.MDBServiceImpl

Default constructor.

MdbStatistics - Class in mdbtools.libmdb

MdbStatistics() - Constructor for class mdbtools.libmdb.MdbStatistics

MdbTableDef - Class in mdbtools.libmdb

MdbTableDef() - Constructor for class mdbtools.libmdb.MdbTableDef

mdbtools - package mdbtools

mdbtools.dbengine - package mdbtools.dbengine

mdbtools.dbengine.functions - package mdbtools.dbengine.functions

mdbtools.dbengine.sql - package mdbtools.dbengine.sql

mdbtools.dbengine.tasks - package mdbtools.dbengine.tasks

mdbtools.examples - package mdbtools.examples

mdbtools.jdbc2 - package mdbtools.jdbc2

mdbtools.libmdb - package mdbtools.libmdb

mdbtools.libmdb06util - package mdbtools.libmdb06util

mdbtools.publicapi - package mdbtools.publicapi

mdbtools.tests - package mdbtools.tests

mdbver - Class in mdbtools.libmdb06util

mdbver() - Constructor for class mdbtools.libmdb06util.mdbver

mdl - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The maximum number of decompostion levels for each component of the current tile.

MEA_SUFFIX - Static variable in class loci.formats.in.FlexReader

measDescBlockLength - Variable in class loci.formats.in.SDTInfo

measDescBlockNo - Variable in class loci.formats.in.SDTInfo

Number of the measurement description block corresponding to this data block.

measDescBlockOffs - Variable in class loci.formats.in.SDTInfo

measMode - Variable in class loci.formats.in.SDTInfo

MEASURE_MODE_2D - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSMeasureMode" tag.

MEASURE_MODE_3D - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSMeasureMode" tag.

MEASUREMENT_SUFFIXES - Static variable in class loci.formats.in.FlexReader

measurementFiles - Variable in class loci.formats.in.FlexReader

measurementFolder - Variable in class loci.formats.in.CellVoyagerReader

measurementResultFile - Variable in class loci.formats.in.CellVoyagerReader

measurementSystem - Variable in class ome.units.unit.Unit

measurementTime - Variable in class loci.formats.in.OperettaReader.OperettaHandler

medianFilter() - Method in class loci.plugins.util.RecordedImageProcessor

MEDICAL_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the medical imaging domain.

medium - Variable in class loci.formats.in.ZeissCZIReader

medium - Variable in class loci.formats.in.ZeissLSMReader.Laser

MEDIUM - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

MEDIUM - Static variable in class ome.specification.XMLMockObjects

The default medium for the objective.

Medium - Enum in ome.xml.model.enums

Medium(String) - Constructor for enum ome.xml.model.enums.Medium

medium - Variable in class ome.xml.model.ObjectiveSettings

MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

MEDIUM_DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

MediumEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Medium.

MediumEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MediumEnumHandler

MEGA(Unit<T>) - Static method in class ome.units.UNITS

MEGABAR - Static variable in class ome.units.UNITS

MEGAHZ - Static variable in class ome.units.UNITS

MEGAM - Static variable in class ome.units.UNITS

MEGAPA - Static variable in class ome.units.UNITS

MEGAS - Static variable in class ome.units.UNITS

MEGAV - Static variable in class ome.units.UNITS

MEGAW - Static variable in class ome.units.UNITS

mem - Class in mdbtools.libmdb

mem() - Constructor for class mdbtools.libmdb.mem

MEM_MODEL - Static variable in class loci.formats.in.CellSensReader

MemAreaPtg - Class in loci.poi.hssf.record.formula

MemAreaPtg() - Constructor for class loci.poi.hssf.record.formula.MemAreaPtg

Creates new MemAreaPtg

MemAreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemAreaPtg

memBank - Variable in class loci.formats.in.SDTInfo

MemErrPtg - Class in loci.poi.hssf.record.formula

MemErrPtg() - Constructor for class loci.poi.hssf.record.formula.MemErrPtg

Creates new MemErrPtg

MemErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemErrPtg

MemFuncPtg - Class in loci.poi.hssf.record.formula

MemFuncPtg() - Constructor for class loci.poi.hssf.record.formula.MemFuncPtg

MemFuncPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemFuncPtg

Creates new function pointer from a byte array usually called while reading an excel file.

memMap - Variable in class loci.tests.testng.OpenBytesPerformanceTest

memoFile - Variable in class loci.formats.Memoizer

Memoizer - Class in loci.formats

ReaderWrapper implementation which caches the state of the delegate (including and other ReaderWrapper instances) after Memoizer.setId(String) has been called.

Memoizer() - Constructor for class loci.formats.Memoizer

Constructs a memoizer around a new ImageReader creating memo files under the same directory as the original file only if the call to Memoizer.setId(java.lang.String) takes longer than 100L in milliseconds.

Memoizer(long) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around a new ImageReader creating memo files under the same directory as the original file only if the call to Memoizer.setId(java.lang.String) takes longer than minimumElapsed in milliseconds.

Memoizer(long, File) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around a new ImageReader creating memo file files under the directory argument including the full path of the original file only if the call to Memoizer.setId(java.lang.String) takes longer than minimumElapsed in milliseconds.

Memoizer(IFormatReader) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around the given IFormatReader creating memo files under the same directory as the original file only if the call to Memoizer.setId(java.lang.String) takes longer than 100L in milliseconds.

Memoizer(IFormatReader, long) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around the given IFormatReader creating memo files under the same directory as the original file only if the call to Memoizer.setId(java.lang.String) takes longer than minimumElapsed in milliseconds.

Memoizer(IFormatReader, long, File) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around the given IFormatReader creating memo files under the directory argument including the full path of the original file only if the call to Memoizer.setId(java.lang.String) takes longer than minimumElapsed in milliseconds.

Memoizer.Deser - Interface in loci.formats

Memoizer.KryoDeser - Class in loci.formats

Memoizer.KryoDeser() - Constructor for class loci.formats.Memoizer.KryoDeser

Memoizer.RandomAccessDeser - Class in loci.formats

Helper implementation that can be used to implement Memoizer.Deser classes for libraries working solely with byte arrays.

Memoizer.RandomAccessDeser() - Constructor for class loci.formats.Memoizer.RandomAccessDeser

MEMORY - Static variable in class loci.tests.testng.Configuration

MemoryData - Class in mdbtools.dbengine

An implementation of Data that stores the complete result in memory

MemoryData() - Constructor for class mdbtools.dbengine.MemoryData

MemoryData(Data, int) - Constructor for class mdbtools.dbengine.MemoryData

MemoryDialog - Class in loci.plugins.in

Bio-Formats Importer memory usage confirmation dialog box.

MemoryDialog(ImportProcess) - Constructor for class loci.plugins.in.MemoryDialog

Creates a memory confirmation dialog for the Bio-Formats Importer.

MemoryRandomAccess - Class in mdbtools.examples

MemoryRandomAccess(byte[]) - Constructor for class mdbtools.examples.MemoryRandomAccess

merge(Map<String, Object>, Map<String, Object>, String) - Static method in class loci.formats.MetadataTools

Merges the given lists of metadata, prepending the specified prefix for the destination keys.

merge - Variable in class loci.plugins.util.BFVirtualStack

MERGE_NAMES - Static variable in class loci.formats.in.BioRadReader

List of merge types.

MergeCellsRecord - Class in loci.poi.hssf.record

Title: Merged Cells Record
Description: Optional record defining a square area of cells to "merged" into one cell.

MergeCellsRecord() - Constructor for class loci.poi.hssf.record.MergeCellsRecord

MergeCellsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MergeCellsRecord

Constructs a MergedCellsRecord and sets its fields appropriately

MergeCellsRecord.MergedRegion - Class in loci.poi.hssf.record

this is a low level representation of a MergedRegion of cells.

MergeCellsRecord.MergedRegion(int, int, short, short) - Constructor for class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

create a merged region all in one stroke.

mergeChannels(BufferedImage[]) - Static method in class loci.formats.gui.AWTImageTools

Merges the given images into a single multi-channel image.

merged - Variable in class loci.poi.hssf.model.Sheet

mergeData(MemoryData, Object[], int, RewindableData[], int[], int) - Method in class mdbtools.dbengine.SelectEngine

merge the data from several datasets to a single dataset

mergedRecords - Variable in class loci.poi.hssf.model.Sheet

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

message - Variable in enum loci.plugins.in.ImportStep

meta - Variable in class loci.formats.in.OMETiffReader

meta - Variable in class loci.formats.in.PrairieReader

Format-specific metadata.

meta - Variable in class loci.plugins.in.ImportProcess

META_EXT - Static variable in class loci.formats.in.BDReader

metadata - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The IIOMetadata object containing metadata for the current image.

metadata - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The IIOMetadata object containing metadata for the current image.

metadata - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The metadata from the stream.

metadata - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

metadata - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

metadata - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

metadata - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

metadata - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

The meta data

metadata - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

The sample model of the image to be compressed.

metadata - Variable in class loci.common.xml.MetadataHandler

metadata - Variable in class loci.formats.FormatReader

Hashtable containing metadata key/value pairs.

metadata - Variable in class loci.formats.in.MetamorphHandler

METADATA - Static variable in class loci.formats.in.MicromanagerReader

File containing extra metadata.

metadata - Variable in class loci.formats.in.ND2Handler

metadata - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

metadata - Variable in class loci.plugins.in.ImportProcess

metadata - Variable in class loci.plugins.util.DataBrowser

metadata - Variable in class loci.tests.testng.TiffWriterTest

The metadata store.

METADATA_KEYS - Static variable in class loci.formats.in.ZeissLSMReader

METADATA_SUFFIXES - Static variable in class loci.formats.in.APLReader

METADATA_SUFFIXES - Static variable in class loci.formats.in.InCellReader

METADATA_SUFFIXES - Static variable in class loci.formats.in.ScanrReader

METADATA_TAG - Static variable in class loci.formats.in.NDPIReader

METADATA_XML_TAG - Static variable in class loci.formats.in.FlowSightReader

metadataComplete - Variable in class loci.formats.CoreMetadata

Indicates whether or not we are confident that all of the metadata stored within the file has been parsed.

MetadataConverter - Class in loci.formats.meta

A utility class containing a method for piping a source MetadataRetrieve object into a destination MetadataStore.

MetadataConverter() - Constructor for class loci.formats.meta.MetadataConverter

Private constructor; all methods in MetadataConverter are static, so this should not be called.

metadataFile - Variable in class loci.formats.in.MicromanagerReader.Position

metadataFile - Variable in class loci.formats.in.OMETiffReader

metadataFile - Variable in class ome.xml.model.BinaryOnly

metadataFiles - Variable in class loci.formats.in.BDReader

metadataFiles - Variable in class loci.formats.in.InCellReader

metadataFiles - Variable in class loci.formats.in.L2DReader

List of all metadata files in the dataset.

metadataFiles - Variable in class loci.formats.in.ScanrReader

MetadataHandler - Class in loci.common.xml

Used to retrieve key/value pairs from XML.

MetadataHandler() - Constructor for class loci.common.xml.MetadataHandler

metadataIndex - Variable in class loci.formats.in.CellSensReader

metadataInPlanes - Variable in class loci.formats.in.SlidebookReader

MetadataLevel - Enum in loci.formats.in

MetadataLevel() - Constructor for enum loci.formats.in.MetadataLevel

metadataOffsets - Variable in class loci.formats.in.SlidebookReader

MetadataOnly - Class in ome.xml.model

MetadataOnly() - Constructor for class ome.xml.model.MetadataOnly

Default constructor.

MetadataOnly(Element, OMEModel) - Constructor for class ome.xml.model.MetadataOnly

Constructs MetadataOnly recursively from an XML DOM tree.

MetadataOnly(MetadataOnly) - Constructor for class ome.xml.model.MetadataOnly

Copy constructor.

metadataOnly - Variable in class ome.xml.model.Pixels

metadataOptions - Variable in class loci.formats.FormatReader

Metadata parsing options.

MetadataOptions - Interface in loci.formats.in

metadataPosition - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

metadataRetrieve - Variable in class loci.formats.FormatWriter

Current metadata retrieval object.

MetadataRetrieve - Interface in loci.formats.meta

MetadataRetrieve - Interface in ome.xml.meta

A proxy whose responsibility it is to extract biological image data from a particular storage medium.

MetadataRoot - Interface in ome.xml.meta

Abstract metadata root node.

metadataSize - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

metadataStore - Variable in class loci.formats.FormatReader

Current metadata store.

MetadataStore - Interface in loci.formats.meta

MetadataStore - Interface in ome.xml.meta

A proxy whose responsibility it is to marshal biological image data into a particular storage medium.

MetadataTools - Class in loci.formats

A utility class for working with metadata objects, including MetadataStore, MetadataRetrieve, and OME-XML strings.

MetadataTools() - Constructor for class loci.formats.MetadataTools

metadataType - Variable in enum loci.formats.tiff.PhotoInterp

Metadata type of the photometric interpretation.

metaFile - Variable in class loci.formats.in.OMETiffReader

MetakitException - Exception in ome.metakit

MetakitException is the exception thrown when something goes wrong when reading a Metakit database file.

MetakitException() - Constructor for exception ome.metakit.MetakitException

MetakitException(String) - Constructor for exception ome.metakit.MetakitException

MetakitException(String, Throwable) - Constructor for exception ome.metakit.MetakitException

MetakitException(Throwable) - Constructor for exception ome.metakit.MetakitException

MetakitReader - Class in ome.metakit

Top-level reader for Metakit database files.

MetakitReader(String) - Constructor for class ome.metakit.MetakitReader

MetakitReader(RandomAccessInputStream) - Constructor for class ome.metakit.MetakitReader

MetakitService - Interface in loci.formats.services

Interface defining methods for interacting with the OME Metakit library.

MetakitServiceImpl - Class in loci.formats.services

Implementation of MetakitService for interacting with the OME Metakit library.

MetakitServiceImpl() - Constructor for class loci.formats.services.MetakitServiceImpl

MetakitTools - Class in ome.metakit

Utility methods for working with Metakit database files.

MetakitTools() - Constructor for class ome.metakit.MetakitTools

METAMORPH_ID - Static variable in class loci.formats.in.MetamorphReader

MetamorphHandler - Class in loci.formats.in

MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.

MetamorphHandler() - Constructor for class loci.formats.in.MetamorphHandler

MetamorphHandler(Hashtable) - Constructor for class loci.formats.in.MetamorphHandler

MetamorphReader - Class in loci.formats.in

Reader is the file format reader for Metamorph STK files.

MetamorphReader() - Constructor for class loci.formats.in.MetamorphReader

Constructs a new Metamorph reader.

MetamorphTiffReader - Class in loci.formats.in

MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.

MetamorphTiffReader() - Constructor for class loci.formats.in.MetamorphTiffReader

Constructs a new Metamorph TIFF reader.

MetamorphTiffReader.NumericComparator - Class in loci.formats.in

MetamorphTiffReader.NumericComparator() - Constructor for class loci.formats.in.MetamorphTiffReader.NumericComparator

MetamorphTiffReader.Well - Class in loci.formats.in

MetamorphTiffReader.Well(int, int, int) - Constructor for class loci.formats.in.MetamorphTiffReader.Well

metaWindow - Variable in class loci.plugins.util.DataBrowser

METERING_MODE - Static variable in class loci.formats.tiff.IFD

METERING_MODE_AVERAGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_CENTER_WEIGHTED_AVERAGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_MAX_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_MIN_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_MULTI_SPOT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_OTHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_PARTIAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_PATTERN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_SPOT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

method - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

The elements' values.

method - Variable in class loci.plugins.util.RecordedImageProcessor.MethodEntry

methodForMQLengthCalc - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies the algorithm to use in calculating the necessary MQ length for each decoding pass.

methodForMQTermination - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies the algorithm used to terminate the MQ codeword.

methodStack - Variable in class loci.plugins.util.RecordedImageProcessor

methodStacks - Variable in class loci.plugins.util.BFVirtualStack

METRE - Static variable in class ome.units.UNITS

mg - Variable in class jj2000.j2k.roi.encoder.ROIScaler

The class generating the ROI mask

MHZ - Static variable in class ome.units.UNITS

MI - Static variable in class ome.units.UNITS

MIASReader - Class in loci.formats.in

MIASReader is the file format reader for Maia Scientific MIAS-2 datasets.

MIASReader() - Constructor for class loci.formats.in.MIASReader

Constructs a new MIAS reader.

MIASReader.AnalysisFile - Class in loci.formats.in

MIASReader.AnalysisFile() - Constructor for class loci.formats.in.MIASReader.AnalysisFile

MICRO(Unit<T>) - Static method in class ome.units.UNITS

MICROBEAM_MANIPULATION_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of a microbeam manipulation.

microbeamManipulation - Variable in class ome.xml.model.LightSourceSettings

MicrobeamManipulation - Class in ome.xml.model

MicrobeamManipulation() - Constructor for class ome.xml.model.MicrobeamManipulation

Default constructor.

MicrobeamManipulation(Element, OMEModel) - Constructor for class ome.xml.model.MicrobeamManipulation

Constructs MicrobeamManipulation recursively from an XML DOM tree.

MicrobeamManipulation(MicrobeamManipulation) - Constructor for class ome.xml.model.MicrobeamManipulation

Copy constructor.

microbeamManipulationLinks - Variable in class ome.xml.model.Image

microbeamManipulationLinks - Variable in class ome.xml.model.ROI

MicrobeamManipulationRef - Class in ome.xml.model

MicrobeamManipulationRef() - Constructor for class ome.xml.model.MicrobeamManipulationRef

Default constructor.

MicrobeamManipulationRef(Element, OMEModel) - Constructor for class ome.xml.model.MicrobeamManipulationRef

Constructs MicrobeamManipulationRef recursively from an XML DOM tree.

MicrobeamManipulationRef(MicrobeamManipulationRef) - Constructor for class ome.xml.model.MicrobeamManipulationRef

Copy constructor.

microbeamManipulations - Variable in class ome.xml.model.Experiment

microbeamManipulations - Variable in class ome.xml.model.Experimenter

MicrobeamManipulationType - Enum in ome.xml.model.enums

MicrobeamManipulationType(String) - Constructor for enum ome.xml.model.enums.MicrobeamManipulationType

MicrobeamManipulationTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for MicrobeamManipulationType.

MicrobeamManipulationTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

MICROHZ - Static variable in class ome.units.UNITS

MICROM - Static variable in class ome.units.UNITS

MicromanagerReader - Class in loci.formats.in

MicromanagerReader is the file format reader for Micro-Manager files.

MicromanagerReader() - Constructor for class loci.formats.in.MicromanagerReader

Constructs a new Micromanager reader.

MicromanagerReader.Index - Class in loci.formats.in

MicromanagerReader.Index(int[]) - Constructor for class loci.formats.in.MicromanagerReader.Index

MicromanagerReader.MicromanagerHandler - Class in loci.formats.in

SAX handler for parsing Acqusition.xml.

MicromanagerReader.MicromanagerHandler() - Constructor for class loci.formats.in.MicromanagerReader.MicromanagerHandler

MicromanagerReader.Position - Class in loci.formats.in

MicromanagerReader.Position() - Constructor for class loci.formats.in.MicromanagerReader.Position

MICROPA - Static variable in class ome.units.UNITS

MICROS - Static variable in class ome.units.UNITS

microscope - Variable in class ome.xml.model.Instrument

Microscope - Class in ome.xml.model

Microscope() - Constructor for class ome.xml.model.Microscope

Default constructor.

Microscope(Element, OMEModel) - Constructor for class ome.xml.model.Microscope

Constructs Microscope recursively from an XML DOM tree.

Microscope(Microscope) - Constructor for class ome.xml.model.Microscope

Copy constructor.

MICROSCOPE_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of a microscope.

microscopeModel - Variable in class loci.formats.in.FEITiffReader

microscopeModels - Variable in class loci.formats.in.LIFReader

MicroscopeType - Enum in ome.xml.model.enums

MicroscopeType(String) - Constructor for enum ome.xml.model.enums.MicroscopeType

MicroscopeTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for MicroscopeType.

MicroscopeTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

microscopyMode - Variable in class loci.formats.in.ImarisHDFReader

microSecPerFrame - Variable in class loci.formats.out.AVIWriter

MICROSOFT - Static variable in class loci.common.DateTools

MICROSOFT_EPOCH - Static variable in class loci.common.DateTools

MICROV - Static variable in class ome.units.UNITS

MICROW - Static variable in class ome.units.UNITS

middleName - Variable in class ome.xml.model.Experimenter

MILLI(Unit<T>) - Static method in class ome.units.UNITS

mimeType - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

mimeType - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

mimeType - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

mimeType - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

mimeType - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

mimeType - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

mimeType - Variable in class ome.xml.model.BinaryFile

mimeTypes - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

mimeTypes - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

MIMETypes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

mimeTypes - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

mimeTypes - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

mimeTypes - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

mimeTypes - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

MIMETypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

MIMETypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

min(double) - Method in class loci.plugins.util.RecordedImageProcessor

Min - Class in mdbtools.dbengine.functions

Min() - Constructor for class mdbtools.dbengine.functions.Min

min - Variable in class mdbtools.dbengine.functions.Min

MIN - Static variable in class ome.units.UNITS

MIN_AVG_PACKET_SZ - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Minimum average size of a packet.

MIN_BROWSER_WIDTH - Static variable in class loci.plugins.util.DataBrowser

MIN_CB_DIM - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The minimum code-block dimension.

MIN_DATATYPE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

The numerically smallest constant representing a TIFF data type.

MIN_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy

MIN_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD

minAdcRate - Variable in class loci.formats.in.SDTInfo

minCfdRate - Variable in class loci.formats.in.SDTInfo

(-1.0 - not set).

minChildren - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

MINCReader - Class in loci.formats.in

MINCReader is the file format reader for MINC MRI files.

MINCReader() - Constructor for class loci.formats.in.MINCReader

Constructs a new MINC reader.

MINIMAL_HEADER_SIZE - Static variable in class ome.jxr.constants.File

MINIMAL_TAGS - Static variable in class loci.formats.in.FlowSightReader

The tags that must be present for this reader to function properly

MinimalTiffReader - Class in loci.formats.in

MinimalTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.

MinimalTiffReader() - Constructor for class loci.formats.in.MinimalTiffReader

Constructs a new MinimalTiffReader.

MinimalTiffReader(String, String) - Constructor for class loci.formats.in.MinimalTiffReader

Constructs a new MinimalTiffReader.

MinimalTiffReader(String, String[]) - Constructor for class loci.formats.in.MinimalTiffReader

Constructs a new MinimalTiffReader.

MINIMUM_JAVA_VERSION - Static variable in class loci.common.NIOByteBufferProvider

The minimum Java version we know is safe for memory mapped I/O.

MINIMUM_MEMORY_PADDING - Static variable in class loci.plugins.in.MemoryDialog

Minimum amount of wiggle room for available memory, in bytes.

minimumElapsed - Variable in class loci.formats.Memoizer

Minimum number of milliseconds which must elapse during the call to Memoizer.setId(java.lang.String) before a memo file will be created.

minInten - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Minimum intensity

minLens - Variable in class loci.common.CBZip2InputStream.Data

MinMaxCalculator - Class in loci.formats

Logic to compute minimum and maximum values for each channel.

MinMaxCalculator() - Constructor for class loci.formats.MinMaxCalculator

Constructs a MinMaxCalculator around a new image reader.

MinMaxCalculator(IFormatReader) - Constructor for class loci.formats.MinMaxCalculator

Constructs a MinMaxCalculator with the given reader.

minMaxCalculator - Variable in class loci.plugins.in.ImportProcess

minMaxDone - Variable in class loci.formats.MinMaxCalculator

Number of planes for which min/max computations have been completed.

minMaxStore - Variable in class loci.formats.MinMaxCalculator

Consumer of channel global minima and maxima

minorVersion - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

minorVersion - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

minSlope - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The minimum slope accross all code-blocks and truncation points.

minSyncRate - Variable in class loci.formats.in.SDTInfo

Minimum rates during the measurement.

minTacRate - Variable in class loci.formats.in.SDTInfo

MINUS - Static variable in class loci.poi.hssf.record.formula.UnaryMinusPtg

minValue - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

minValue() - Method in class loci.plugins.util.RecordedImageProcessor

minValues - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

minX - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The X coordinate of the image's upper-left pixel.

minX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

minX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The destination upper-left corner

minX - Variable in class loci.formats.in.CellH5Reader

minX - Variable in class loci.formats.in.ImarisHDFReader

minY - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The Y coordinate of the image's upper-left pixel.

minY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

minY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The destination upper-left corner

minY - Variable in class loci.formats.in.CellH5Reader

minY - Variable in class loci.formats.in.ImarisHDFReader

minZ - Variable in class loci.formats.in.CellH5Reader

minZ - Variable in class loci.formats.in.ImarisHDFReader

MIRROR_H - Static variable in class loci.formats.in.CellSensReader

MIRROR_V - Static variable in class loci.formats.in.CellSensReader

MISSING - Static variable in class loci.plugins.config.LibraryEntry

HTML markup for missing library.

MISSING_VERSION_CODE - Static variable in class loci.plugins.config.LibraryEntry

Version code to indicate a missing library.

MissingArgPtg - Class in loci.poi.hssf.record.formula

Missing Function Arguments Avik Sengupta <avik at apache.org>

MissingArgPtg() - Constructor for class loci.poi.hssf.record.formula.MissingArgPtg

MissingArgPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MissingArgPtg

MissingLibraryException - Exception in loci.formats

MissingLibraryException is the exception thrown when a particular data stream or filename requires a library that is not present on the system.

MissingLibraryException() - Constructor for exception loci.formats.MissingLibraryException

MissingLibraryException(String) - Constructor for exception loci.formats.MissingLibraryException

MissingLibraryException(String, Throwable) - Constructor for exception loci.formats.MissingLibraryException

MissingLibraryException(Throwable) - Constructor for exception loci.formats.MissingLibraryException

MissingSectionException - Exception in loci.poi.hpsf

This exception is thrown if one of the PropertySet's convenience methods does not find a required Section.

MissingSectionException() - Constructor for exception loci.poi.hpsf.MissingSectionException

Constructor

MissingSectionException(String) - Constructor for exception loci.poi.hpsf.MissingSectionException

Constructor

MissingSectionException(Throwable) - Constructor for exception loci.poi.hpsf.MissingSectionException

Constructor

MissingSectionException(String, Throwable) - Constructor for exception loci.poi.hpsf.MissingSectionException

Constructor

MJPBCodec - Class in loci.formats.codec

Methods for compressing and decompressing QuickTime Motion JPEG-B data.

MJPBCodec() - Constructor for class loci.formats.codec.MJPBCodec

MJPBCodecOptions - Class in loci.formats.codec

Options for compressing and decompressing MJPB data.

MJPBCodecOptions() - Constructor for class loci.formats.codec.MJPBCodecOptions

MJPEG_HUFFMAN_TABLE - Static variable in class loci.formats.in.AVIReader

Huffman table for MJPEG data.

mkdirs() - Method in class loci.common.Location

Creates a directory structures described by this Location's internal File instance.

MM - Static variable in class ome.units.UNITS

MMHEADER - Static variable in class loci.formats.in.FluoviewReader

Private TIFF tags

MMHG - Static variable in class ome.units.UNITS

mmPlanes - Variable in class loci.formats.in.MetamorphReader

MMSRecord - Class in loci.poi.hssf.record

Title: MMS Record

MMSRecord() - Constructor for class loci.poi.hssf.record.MMSRecord

MMSRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MMSRecord

Constructs a MMS record and sets its fields appropriately.

MMSTAMP - Static variable in class loci.formats.in.FluoviewReader

MNG_MAGIC_BYTES - Static variable in class loci.formats.in.MNGReader

MNGReader - Class in loci.formats.in

MNGReader is the file format reader for Multiple-image Network Graphics (MNG) files.

MNGReader() - Constructor for class loci.formats.in.MNGReader

Constructs a new MNG reader.

MNGReader.SeriesInfo - Class in loci.formats.in

MNGReader.SeriesInfo() - Constructor for class loci.formats.in.MNGReader.SeriesInfo

mod - Variable in class loci.formats.in.SDTInfo

Module number.

modality - Variable in class loci.formats.in.ND2Handler

model - Variable in class loci.formats.in.BioRadSCNReader

MODEL - Static variable in class loci.formats.in.FluoviewReader

model - Variable in class loci.formats.in.FluoviewReader

model - Variable in class loci.formats.in.LeicaHandler.Detector

model - Variable in class loci.formats.in.ZeissLSMReader.Laser

MODEL - Static variable in class loci.formats.tiff.IFD

Model - Interface in loci.poi.hssf.model

enclosing_type describe the purpose here

model - Variable in class ome.xml.meta.OMEXMLMetadataImpl

model - Variable in class ome.xml.model.ManufacturerSpec

ModelFactory - Class in loci.poi.hssf.eventmodel

ModelFactory creates workbook and sheet models based upon events thrown by them there events from the EventRecordFactory.

ModelFactory() - Constructor for class loci.poi.hssf.eventmodel.ModelFactory

Constructor for ModelFactory.

ModelFactoryListener - Interface in loci.poi.hssf.eventmodel

ModelFactoryListener is registered with the ModelFactory.

modelObjects - Variable in class ome.xml.model.OMEModelImpl

modFpgaVer - Variable in class loci.formats.in.SDTInfo

New in v.8.4.

modify() - Method in class loci.poi.util.BinaryTree

increment the modification count -- used to check for concurrent modification of the map through the map and through an Iterator from one of its Set or Collection views

modSerNo - Variable in class loci.formats.in.SDTInfo

Serial number of the module.

modType - Variable in class loci.formats.in.SDTInfo

Module type.

modTypeCode - Variable in class loci.formats.in.SDTInfo

ModuleSpec - Class in jj2000.j2k

This generic class is used to handle values to be used by a module for each tile and component.

ModuleSpec(int, int, byte) - Constructor for class jj2000.j2k.ModuleSpec

Constructs a 'ModuleSpec' object, initializing all the components and tiles to the 'SPEC_DEF' spec val type, for the specified number of components and tiles.

modulo - Variable in class loci.formats.meta.ModuloAnnotation

Modulo - Class in loci.formats

Represents a subdimension of Z, C, or T as needed for supporting Modulo annotations.

Modulo(String) - Constructor for class loci.formats.Modulo

Modulo(Modulo) - Constructor for class loci.formats.Modulo

MODULO_NS - Static variable in class loci.formats.meta.ModuloAnnotation

ModuloAnnotation - Class in loci.formats.meta

ModuloAnnotation() - Constructor for class loci.formats.meta.ModuloAnnotation

moduloC - Variable in class loci.formats.CoreMetadata

moduloT - Variable in class loci.formats.CoreMetadata

moduloZ - Variable in class loci.formats.CoreMetadata

MolecularImagingReader - Class in loci.formats.in

MolecularImagingReader is the file format reader for Molecular Imaging files.

MolecularImagingReader() - Constructor for class loci.formats.in.MolecularImagingReader

Constructs a new Molecular Imaging reader.

Money - Class in mdbtools.libmdb

Money() - Constructor for class mdbtools.libmdb.Money

montageIndex - Variable in class loci.formats.in.FluoviewReader

montageOffsets - Variable in class loci.formats.in.FluoviewReader

mosaics - Variable in class loci.formats.in.ZeissCZIReader

mouseClicked(MouseEvent) - Method in class loci.plugins.in.MainDialog

mouseDragged(MouseEvent) - Method in class loci.formats.gui.ImageViewer

Handles cursor probes.

mouseEntered(MouseEvent) - Method in class loci.plugins.in.MainDialog

Focuses the component upon mouseover.

mouseExited(MouseEvent) - Method in class loci.plugins.in.MainDialog

mouseMoved(MouseEvent) - Method in class loci.formats.gui.ImageViewer

Handles cursor probes.

mousePressed(MouseEvent) - Method in class loci.plugins.in.MainDialog

mouseReleased(MouseEvent) - Method in class loci.plugins.in.MainDialog

mouseWheelMoved(MouseWheelEvent) - Method in class loci.plugins.util.DataBrowser

movedBuiltins - Variable in class loci.poi.hssf.usermodel.HSSFDataFormat

moveTo(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

mp - Variable in class jj2000.j2k.util.StreamMsgLogger

The printer that formats the text

MPA - Static variable in class ome.units.UNITS

mPS - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The current most probable signal for each context

mPS - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The current most probable signal for each context

mq - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The MQ decoder to use.

MQ_INIT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The initial states for the MQ coder

MQ_INIT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The initial states for the MQ coder

MQCoder - Class in jj2000.j2k.entropy.encoder

This class implements the MQ arithmetic coder.

MQCoder(ByteOutputBuffer, int, int[]) - Constructor for class jj2000.j2k.entropy.encoder.MQCoder

Instantiates a new MQ-coder, with the specified number of contexts and initial states.

MQDecoder - Class in jj2000.j2k.entropy.decoder

This class implements the MQ arithmetic decoder.

MQDecoder(ByteInputBuffer, int, int[]) - Constructor for class jj2000.j2k.entropy.decoder.MQDecoder

Instantiates a new MQ-decoder, with the specified number of contexts and initial states.

mqrs - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

MQ reset specifications

mqT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The MQ coder used, for each thread

mQuit - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The maximum number of bit planes to decode for any code-block

MR_LUT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Magnitude Refinement context lookup table

MR_LUT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Magnitude Refinement context lookup table

MR_LUT_BITS - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The number of bits used for the Magnitude Refinement lookup table

MR_LUT_BITS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The number of bits used for the Magnitude Refinement lookup table

MR_MASK - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The mask to obtain the MR index to 'MR_LUT' from the 'state' information.

MR_MASK - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The mask to obtain the MR index to 'MR_LUT' from the 'state' information.

MRC_SUFFIXES - Static variable in class loci.formats.in.MRCReader

MRCReader - Class in loci.formats.in

MRCReader is the file format reader for MRC files.

MRCReader() - Constructor for class loci.formats.in.MRCReader

Constructs a new MRC reader.

mReserved1 - Variable in class loci.formats.in.SDTInfo

mReserved2 - Variable in class loci.formats.in.SDTInfo

mressrc - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The 'MultiResImgData' source

mressrc - Variable in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

The MultiResImgData source

MRW_MAGIC_STRING - Static variable in class loci.formats.in.MRWReader

MRWReader - Class in loci.formats.in

MRWReader is the file format reader for Minolta MRW files.

MRWReader() - Constructor for class loci.formats.in.MRWReader

Constructs a new MRW reader.

MS - Static variable in class ome.units.UNITS

MS_VIDEO - Static variable in class loci.formats.in.AVIReader

msbSkipped - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

The number of most significant bits which are skipped for this code-block (= Mb-1-bitDepth).

MSE_LKP_BITS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The number of bits used to index in the 'fm' lookup table, 7.

MSE_LKP_FRAC_BITS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The number of fractional bits used to store data in the 'fm' and 'fs' lookup tables.

msg - Variable in class loci.formats.FilePattern

Error message generated during file pattern construction.

msg(String) - Method in class loci.formats.gui.DataConverter

MsgLogger - Interface in jj2000.j2k.util

This class provides a simple common abstraction of a facility that logs and/or displays messages or simple strings.

MsgPrinter - Class in jj2000.j2k.util

This utility class formats messages to the specified line width, by inserting line-breaks between words, and printing the resulting lines.

MsgPrinter(int) - Constructor for class jj2000.j2k.util.MsgPrinter

Creates a new message printer with the specified line width and with the default locale.

MSOBI_DIB - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData

MSOBI_EMF - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData

MSOBI_JPEG - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData

MSOBI_PICT - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData

MSOBI_PNG - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData

MSOBI_WMF - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData

MSRLE - Static variable in class loci.formats.in.AVIReader

Supported compression types.

MSRLECodec - Class in loci.formats.codec

Methods for compressing and decompressing data using Microsoft RLE.

MSRLECodec() - Constructor for class loci.formats.codec.MSRLECodec

mss - Variable in class jj2000.j2k.roi.ROIDeScaler

The MaxShiftSpec containing the scaling values for all tile-components

MSVideoCodec - Class in loci.formats.codec

Methods for compressing and decompressing data using Microsoft Video 1.

MSVideoCodec() - Constructor for class loci.formats.codec.MSVideoCodec

MTORR - Static variable in class ome.units.UNITS

mtResol - Variable in class loci.formats.in.SDTInfo

Macro time clock in 0.1 ns units.

MulBlankRecord - Class in loci.poi.hssf.record

Title: Mulitple Blank cell record

MulBlankRecord() - Constructor for class loci.poi.hssf.record.MulBlankRecord

Creates new MulBlankRecord

MulBlankRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MulBlankRecord

Constructs a MulBlank record and sets its fields appropriately.

MulRKRecord - Class in loci.poi.hssf.record

Used to store multiple RK numbers on a row.

MulRKRecord() - Constructor for class loci.poi.hssf.record.MulRKRecord

Creates new MulRKRecord

MulRKRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MulRKRecord

Constructs a MulRK record and sets its fields appropriately.

MULTI_PHOTON - Static variable in class loci.formats.in.LegacyND2Reader

multiBands - Variable in class loci.formats.in.LeicaHandler

MULTIDIM_IMAGE_VOLUME - Static variable in class loci.formats.in.CellSensReader

MULTIDIM_STACK_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

multifile - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo

multiply(double) - Method in class loci.plugins.util.RecordedImageProcessor

Multiply() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a Multiply

multiply(Integer) - Method in class ome.units.unit.Unit

multiply(Double) - Method in class ome.units.unit.Unit

multiply_byte(int[], int, int[]) - Static method in class mdbtools.libmdb.Money

MultiplyPtg - Class in loci.poi.hssf.record.formula

Implements the standard mathmatical multiplication - *

MultiplyPtg() - Constructor for class loci.poi.hssf.record.formula.MultiplyPtg

Creates new AddPtg

MultiplyPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MultiplyPtg

MultiResImgData - Interface in jj2000.j2k.wavelet.synthesis

This interface defines methods to access image attributes (width, height, number of components, etc.) of multiresolution images, such as those resulting from an inverse wavelet transform.

MultiResImgDataAdapter - Class in jj2000.j2k.wavelet.synthesis

This class provides a default implementation for the methods of the 'MultiResImgData' interface.

MultiResImgDataAdapter(MultiResImgData) - Constructor for class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Instantiates the MultiResImgDataAdapter object specifying the MultiResImgData source.

MUST_GROUP - Static variable in class loci.formats.FormatTools

File grouping options.

MUST_GROUP - Static variable in interface loci.formats.IFormatReader

File grouping options.

MutableProperty - Class in loci.poi.hpsf

Adds writing capability to the Property class.

MutableProperty() - Constructor for class loci.poi.hpsf.MutableProperty

Creates an empty property.

MutableProperty(Property) - Constructor for class loci.poi.hpsf.MutableProperty

Creates a MutableProperty as a copy of an existing Property.

MutablePropertySet - Class in loci.poi.hpsf

Adds writing support to the PropertySet class.

MutablePropertySet() - Constructor for class loci.poi.hpsf.MutablePropertySet

Constructs a MutablePropertySet instance.

MutablePropertySet(PropertySet) - Constructor for class loci.poi.hpsf.MutablePropertySet

Constructs a MutablePropertySet by doing a deep copy of an existing PropertySet.

MutableSection - Class in loci.poi.hpsf

Adds writing capability to the Section class.

MutableSection() - Constructor for class loci.poi.hpsf.MutableSection

Creates an empty mutable section.

MutableSection(Section) - Constructor for class loci.poi.hpsf.MutableSection

Constructs a MutableSection by doing a deep copy of an existing Section.

MV - Static variable in class ome.units.UNITS

MW - Static variable in class ome.units.UNITS

myReader - Variable in class loci.formats.gui.ImageViewer

Current format reader.

myWriter - Variable in class loci.formats.gui.ImageViewer

Current format writer.

N

n - Variable in class jj2000.j2k.entropy.CodedCBlk

The horizontal index of the code-block, within the subband.

n - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The horizontal index of the code-block, within the subband

N_ACCUMULATIONS - Static variable in class loci.formats.in.FluoviewReader

N_FRAMES - Static variable in class loci.formats.in.FluoviewReader

N_GROUPS - Static variable in class loci.common.CBZip2InputStream

na - Variable in class loci.formats.in.ND2Handler

NAFReader - Class in loci.formats.in

NAFReader is the file format reader for Hamamatsu Aquacosmos NAF files.

NAFReader() - Constructor for class loci.formats.in.NAFReader

Constructs a new NAF reader.

name - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

name - Variable in enum loci.formats.codec.JPEG2000BoxType

The name of the box type.

name - Variable in enum loci.formats.codec.JPEG2000SegmentMarker

The name of the segment marker.

name - Variable in enum loci.formats.in.BaseZeissReader.Charset

name - Variable in class loci.formats.in.BaseZeissReader.Layer

name - Variable in class loci.formats.in.BaseZeissReader.Shape

name - Variable in class loci.formats.in.CellSensReader.Pyramid

name - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

name - Variable in class loci.formats.in.FV1000Reader.ChannelData

name - Variable in class loci.formats.in.IM3Reader.IM3Record

name - Variable in class loci.formats.in.IM3Reader.Spectrum

name - Variable in class loci.formats.in.LeicaHandler.Channel

name - Variable in class loci.formats.in.LeicaHandler.ROI

name - Variable in class loci.formats.in.LeicaReader.Detector

name - Variable in class loci.formats.in.LeicaSCNReader.Image

name - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection

name - Variable in class loci.formats.in.LiFlimReader.ROI

name - Variable in class loci.formats.in.LIFReader.ROI

name - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

name - Variable in class loci.formats.in.ZeissCZIReader.Channel

name - Variable in class loci.formats.in.ZeissLSMReader.DataChannel

name - Variable in class loci.formats.in.ZeissLSMReader.IlluminationChannel

name - Variable in class loci.formats.in.ZeissLSMReader.Recording

name - Variable in enum loci.formats.tiff.PhotoInterp

Given name of the photometric interpretation.

name - Variable in class loci.plugins.config.LibraryEntry

name - Variable in class loci.plugins.in.IdDialog

name - Variable in class loci.plugins.util.RecordedImageProcessor.MethodEntry

name - Variable in class loci.poi.hpsf.CustomProperty

name - Variable in class loci.poi.hssf.usermodel.HSSFName

name - Variable in class loci.poi.poifs.filesystem.DocumentDescriptor

name - Variable in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

name - Variable in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

NAME - Static variable in class loci.tests.testng.Configuration

name - Variable in class mdbtools.dbengine.Tests.SimpleDataSourceTable

name - Variable in class mdbtools.libmdb.MdbColumn

name - Variable in class mdbtools.libmdb.MdbTableDef

name - Variable in class ome.metakit.Column

name - Variable in class ome.xml.model.Channel

name - Variable in class ome.xml.model.Dataset

name - Variable in class ome.xml.model.ExperimenterGroup

name - Variable in class ome.xml.model.Image

name - Variable in class ome.xml.model.MapPair

name - Variable in class ome.xml.model.Plate

name - Variable in class ome.xml.model.PlateAcquisition

name - Variable in class ome.xml.model.Project

name - Variable in class ome.xml.model.Reagent

name - Variable in class ome.xml.model.ROI

name - Variable in class ome.xml.model.Screen

name - Variable in class ome.xml.model.StageLabel

NAME_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the Name attribute.

nameLength - Variable in class loci.formats.in.LeicaReader

namepos - Variable in class loci.poi.hssf.model.WorkbookRecordList

NamePtg - Class in loci.poi.hssf.record.formula

NamePtg() - Constructor for class loci.poi.hssf.record.formula.NamePtg

NamePtg(String, Workbook) - Constructor for class loci.poi.hssf.record.formula.NamePtg

Creates new NamePtg

NamePtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.NamePtg

Creates new NamePtg

NameRecord - Class in loci.poi.hssf.record

Title: Name Record (aka Named Range)

NameRecord() - Constructor for class loci.poi.hssf.record.NameRecord

Creates new NameRecord

NameRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NameRecord

Constructs a Name record and sets its fields appropriately.

NameRecord(byte, short) - Constructor for class loci.poi.hssf.record.NameRecord

Constructor to create a built-in named region

names - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

names - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

The table to link tag names for all the JP2 boxes.

names - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

names - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

names - Variable in class loci.formats.in.FlexReader.FlexHandler

names - Static variable in class loci.plugins.shortcut.ShortcutPanel

Details for installed plugins.

names - Variable in class loci.poi.hssf.model.Workbook

names - Variable in class loci.poi.hssf.usermodel.HSSFWorkbook

this holds the HSSFName objects attached to this workbook

NAMESPACE - Static variable in class ome.xml.model.AffineTransform

NAMESPACE - Static variable in class ome.xml.model.Annotation

namespace - Variable in class ome.xml.model.Annotation

NAMESPACE - Static variable in class ome.xml.model.AnnotationRef

NAMESPACE - Static variable in class ome.xml.model.Arc

NAMESPACE - Static variable in class ome.xml.model.BasicAnnotation

NAMESPACE - Static variable in class ome.xml.model.BinaryFile

NAMESPACE - Static variable in class ome.xml.model.BinaryOnly

NAMESPACE - Static variable in class ome.xml.model.BinData

NAMESPACE - Static variable in class ome.xml.model.BooleanAnnotation

NAMESPACE - Static variable in class ome.xml.model.Channel

NAMESPACE - Static variable in class ome.xml.model.ChannelRef

NAMESPACE - Static variable in class ome.xml.model.CommentAnnotation

NAMESPACE - Static variable in class ome.xml.model.Dataset

NAMESPACE - Static variable in class ome.xml.model.DatasetRef

NAMESPACE - Static variable in class ome.xml.model.Detector

NAMESPACE - Static variable in class ome.xml.model.DetectorSettings

NAMESPACE - Static variable in class ome.xml.model.Dichroic

NAMESPACE - Static variable in class ome.xml.model.DichroicRef

NAMESPACE - Static variable in class ome.xml.model.DoubleAnnotation

NAMESPACE - Static variable in class ome.xml.model.Ellipse

NAMESPACE - Static variable in class ome.xml.model.EmissionFilterRef

NAMESPACE - Static variable in class ome.xml.model.ExcitationFilterRef

NAMESPACE - Static variable in class ome.xml.model.Experiment

NAMESPACE - Static variable in class ome.xml.model.Experimenter

NAMESPACE - Static variable in class ome.xml.model.ExperimenterGroup

NAMESPACE - Static variable in class ome.xml.model.ExperimenterGroupRef

NAMESPACE - Static variable in class ome.xml.model.ExperimenterRef

NAMESPACE - Static variable in class ome.xml.model.ExperimentRef

NAMESPACE - Static variable in class ome.xml.model.External

NAMESPACE - Static variable in class ome.xml.model.Filament

NAMESPACE - Static variable in class ome.xml.model.FileAnnotation

NAMESPACE - Static variable in class ome.xml.model.Filter

NAMESPACE - Static variable in class ome.xml.model.FilterRef

NAMESPACE - Static variable in class ome.xml.model.FilterSet

NAMESPACE - Static variable in class ome.xml.model.FilterSetRef

NAMESPACE - Static variable in class ome.xml.model.GenericExcitationSource

NAMESPACE - Static variable in class ome.xml.model.Image

NAMESPACE - Static variable in class ome.xml.model.ImageRef

NAMESPACE - Static variable in class ome.xml.model.ImagingEnvironment

NAMESPACE - Static variable in class ome.xml.model.Instrument

NAMESPACE - Static variable in class ome.xml.model.InstrumentRef

NAMESPACE - Static variable in class ome.xml.model.Label

NAMESPACE - Static variable in class ome.xml.model.Laser

NAMESPACE - Static variable in class ome.xml.model.Leader

NAMESPACE - Static variable in class ome.xml.model.LightEmittingDiode

NAMESPACE - Static variable in class ome.xml.model.LightPath

NAMESPACE - Static variable in class ome.xml.model.LightSource

NAMESPACE - Static variable in class ome.xml.model.LightSourceSettings

NAMESPACE - Static variable in class ome.xml.model.Line

NAMESPACE - Static variable in class ome.xml.model.ListAnnotation

NAMESPACE - Static variable in class ome.xml.model.LongAnnotation

NAMESPACE - Static variable in class ome.xml.model.ManufacturerSpec

NAMESPACE - Static variable in class ome.xml.model.Map

NAMESPACE - Static variable in class ome.xml.model.MapAnnotation

NAMESPACE - Static variable in class ome.xml.model.Mask

NAMESPACE - Static variable in class ome.xml.model.MetadataOnly

NAMESPACE - Static variable in class ome.xml.model.MicrobeamManipulation

NAMESPACE - Static variable in class ome.xml.model.MicrobeamManipulationRef

NAMESPACE - Static variable in class ome.xml.model.Microscope

NAMESPACE - Static variable in class ome.xml.model.NumericAnnotation

NAMESPACE - Static variable in class ome.xml.model.Objective

NAMESPACE - Static variable in class ome.xml.model.ObjectiveSettings

NAMESPACE - Static variable in class ome.xml.model.OME

NAMESPACE - Static variable in class ome.xml.model.Pixels

NAMESPACE - Static variable in class ome.xml.model.Plane

NAMESPACE - Static variable in class ome.xml.model.Plate

NAMESPACE - Static variable in class ome.xml.model.PlateAcquisition

NAMESPACE - Static variable in class ome.xml.model.PlateRef

NAMESPACE - Static variable in class ome.xml.model.Point

NAMESPACE - Static variable in class ome.xml.model.Polygon

NAMESPACE - Static variable in class ome.xml.model.Polyline

NAMESPACE - Static variable in class ome.xml.model.Project

NAMESPACE - Static variable in class ome.xml.model.ProjectRef

NAMESPACE - Static variable in class ome.xml.model.Pump

NAMESPACE - Static variable in class ome.xml.model.Reagent

NAMESPACE - Static variable in class ome.xml.model.ReagentRef

NAMESPACE - Static variable in class ome.xml.model.Rectangle

NAMESPACE - Static variable in class ome.xml.model.Reference

NAMESPACE - Static variable in class ome.xml.model.Rights

NAMESPACE - Static variable in class ome.xml.model.ROI

namespace - Variable in class ome.xml.model.ROI

NAMESPACE - Static variable in class ome.xml.model.ROIRef

NAMESPACE - Static variable in class ome.xml.model.Screen

NAMESPACE - Static variable in class ome.xml.model.Settings

NAMESPACE - Static variable in class ome.xml.model.Shape

NAMESPACE - Static variable in class ome.xml.model.StageLabel

NAMESPACE - Static variable in class ome.xml.model.StructuredAnnotations

NAMESPACE - Static variable in class ome.xml.model.TagAnnotation

NAMESPACE - Static variable in class ome.xml.model.TermAnnotation

NAMESPACE - Static variable in class ome.xml.model.TextAnnotation

NAMESPACE - Static variable in class ome.xml.model.TiffData

NAMESPACE - Static variable in class ome.xml.model.TimestampAnnotation

NAMESPACE - Static variable in class ome.xml.model.TransmittanceRange

NAMESPACE - Static variable in class ome.xml.model.TypeAnnotation

NAMESPACE - Static variable in class ome.xml.model.Union

NAMESPACE - Static variable in class ome.xml.model.UUID

NAMESPACE - Static variable in class ome.xml.model.Well

NAMESPACE - Static variable in class ome.xml.model.WellSample

NAMESPACE - Static variable in class ome.xml.model.WellSampleRef

NAMESPACE - Static variable in class ome.xml.model.XMLAnnotation

nameStack - Variable in class loci.formats.in.LeicaHandler

nameStack - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

nameStack - Variable in class loci.formats.in.ZeissTIFFHandler

NameXPtg - Class in loci.poi.hssf.record.formula

NameXPtg() - Constructor for class loci.poi.hssf.record.formula.NameXPtg

NameXPtg(String) - Constructor for class loci.poi.hssf.record.formula.NameXPtg

Creates new NamePtg

NameXPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.NameXPtg

Creates new NamePtg

NamingConvention - Enum in ome.xml.model.enums

NamingConvention(String) - Constructor for enum ome.xml.model.enums.NamingConvention

NamingConventionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for NamingConvention.

NamingConventionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.NamingConventionEnumHandler

NAN_data - Variable in class loci.poi.hssf.record.RecordInputStream

NANO(Unit<T>) - Static method in class ome.units.UNITS

NATIVE_FORMAT_NAME - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata

NATIVE_FORMAT_NAME - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata

NATIVE_LIB_CLASS - Static variable in class loci.formats.services.JPEGTurboServiceImpl

nativeMetadataFormatClassName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

nativeMetadataFormatClassName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

NativeND2Reader - Class in loci.formats.in

NativeND2Reader is the file format reader for Nikon ND2 files.

NativeND2Reader() - Constructor for class loci.formats.in.NativeND2Reader

Constructs a new ND2 reader.

nativePhotometricInterpretation - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

NativeQTReader - Class in loci.formats.in

NativeQTReader is the file format reader for QuickTime movie files.

NativeQTReader() - Constructor for class loci.formats.in.NativeQTReader

Constructs a new QuickTime reader.

nativeReader - Variable in class loci.formats.DelegateReader

Native reader.

nativeReaderInitialized - Variable in class loci.formats.DelegateReader

Flag indicating that the native reader was successfully initialized.

NativeServices - Class in jj2000.j2k.util

This class presents a collection of static methods that allow access to some native methods.

NativeServices() - Constructor for class jj2000.j2k.util.NativeServices

Private and only constructor, so that no class instance might be created.

nb - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

The number of written bytes (excluding the bit buffer)

nblk - Variable in class jj2000.j2k.codestream.PrecInfo

Number of code-blocks in each subband belonging to this precinct

nBusyComps - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The number of busy compressors, for each component.

nBytes - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Number of bytes allocated to each tile.

nc - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The number of components in the image

nc - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The number of components

nc - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The number of components

nc - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Number of components

nc - Variable in class jj2000.j2k.image.ImgDataJoiner

The number of components in the image

nc - Variable in class jj2000.j2k.image.input.ImgReader

The number of components in the image

ncb - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Number of codeblocks encountered.

ncblks - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

Cache object to avoid excessive allocation/deallocation.

ncbQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Flag indicating whether ncb quit condition has been reached

nChannels - Variable in class loci.formats.gui.SignedColorModel

nChannels - Variable in class loci.formats.gui.UnsignedIntColorModel

nChannels - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

nCOCMarkSeg - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Counts number of COC markers found in the header

nColorPlanes - Variable in class loci.formats.in.PCXReader

nCols - Variable in class loci.formats.in.FlexReader

ncom - Variable in class jj2000.j2k.codestream.HeaderInfo

Number of found COM marker segment

nCOMMarkSeg - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Counts number of COM markers found in the header

nComp - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

nComp - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

nComp - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The number of components in the image

nComp - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The number of components in the image

nComp - Variable in class jj2000.j2k.ModuleSpec

The number of components

ncx - Variable in class loci.formats.in.SDTInfo

ncy - Variable in class loci.formats.in.SDTInfo

ND2_MAGIC_BYTES_1 - Static variable in class loci.formats.in.NativeND2Reader

ND2_MAGIC_BYTES_2 - Static variable in class loci.formats.in.NativeND2Reader

ND2Handler - Class in loci.formats.in

DefaultHandler implementation for handling XML produced by Nikon Elements.

ND2Handler(List<CoreMetadata>, int) - Constructor for class loci.formats.in.ND2Handler

ND2Handler(List<CoreMetadata>, boolean, int) - Constructor for class loci.formats.in.ND2Handler

ND2Reader - Class in loci.formats.in

ND2Reader is the file format reader for Nikon ND2 files.

ND2Reader() - Constructor for class loci.formats.in.ND2Reader

Constructs a new ND2 reader.

ND2Widgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats ND2 support.

ND2Widgets() - Constructor for class loci.plugins.config.ND2Widgets

ND_SUFFIX - Static variable in class loci.formats.in.MetamorphReader

ndata - Variable in class jj2000.j2k.codestream.writer.CodestreamWriter

The number of bytes already written to the bit stream

ndata - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

The number of bytes already written to the bit stream, excluding the header length, magic number and header length info.

nDecCblk - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

The number of already decoded code-blocks

ndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Number of bits in the output bit buffer.

ndFilename - Variable in class loci.formats.in.MetamorphReader

ndFilter - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Neutral density value.

ndFilter - Variable in class ome.xml.model.Channel

ndFilters - Variable in class loci.formats.in.DeltavisionReader

ndFilters - Variable in class loci.formats.in.SlidebookReader

nDimensions - Variable in class loci.formats.in.CellSensReader

nDimensions - Variable in class loci.formats.in.NiftiReader

ndl - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

Number of decomposition levels in each component

ndpiFiles - Variable in class loci.formats.in.NDPISReader

NDPIReader - Class in loci.formats.in

NDPIReader is the file format reader for Hamamatsu .ndpi files.

NDPIReader() - Constructor for class loci.formats.in.NDPIReader

Constructs a new NDPI reader.

NDPISReader - Class in loci.formats.in

NDPISReader is the file format reader for Hamamatsu .ndpis files.

NDPISReader() - Constructor for class loci.formats.in.NDPISReader

Constructs a new NDPIS reader.

needLegacy - Variable in class loci.formats.out.QTWriter

Whether we need the legacy writer.

needMem - Variable in class loci.plugins.in.MemoryDialog

Required memory for the dataset, in bytes.

needPrompt() - Method in class loci.plugins.in.ColorDialog

needPrompt() - Method in class loci.plugins.in.CropDialog

needPrompt() - Method in class loci.plugins.in.FilePatternDialog

needPrompt() - Method in class loci.plugins.in.IdDialog

needPrompt() - Method in class loci.plugins.in.ImporterDialog

needPrompt() - Method in class loci.plugins.in.LocationDialog

needPrompt() - Method in class loci.plugins.in.MainDialog

needPrompt() - Method in class loci.plugins.in.MemoryDialog

needPrompt() - Method in class loci.plugins.in.RangeDialog

needPrompt() - Method in class loci.plugins.in.SeriesDialog

needPrompt() - Method in class loci.plugins.in.SwapDialog

needPrompt() - Method in class loci.plugins.in.UpgradeDialog

needToCreateIndex(RenderedImage) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

NEF_SUFFIX - Static variable in class loci.formats.in.NikonReader

netcdf - Variable in class loci.formats.in.ImarisHDFReader

netcdf - Variable in class loci.formats.in.MINCReader

netcdf - Variable in class loci.formats.in.VeecoReader

netCDFFile - Variable in class loci.formats.services.NetCDFServiceImpl

NetCDF file instance.

NetCDFService - Interface in loci.formats.services

Utility class for working with NetCDF/HDF files.

NetCDFServiceImpl - Class in loci.formats.services

Utility class for working with NetCDF/HDF files.

NetCDFServiceImpl() - Constructor for class loci.formats.services.NetCDFServiceImpl

Default constructor.

NEW_MDIM_VOLUME_HEADER - Static variable in class loci.formats.in.CellSensReader

NEW_SUBFILE_TYPE - Static variable in class loci.formats.tiff.IFD

NEW_SUBFILE_TYPE_REDUCED_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "NewSubfileType" tag.

NEW_SUBFILE_TYPE_SINGLE_PAGE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "NewSubfileType" tag.

NEW_SUBFILE_TYPE_TRANSPARENCY - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "NewSubfileType" tag.

NEW_VOLUME_HEADER - Static variable in class loci.formats.in.CellSensReader

newDocumentSummaryInformation() - Static method in class loci.poi.hpsf.PropertySetFactory

Creates a new document summary information.

newOrder - Variable in class loci.formats.AxisGuesser

Adjusted ordering of internal dimensional axes.

newSummaryInformation() - Static method in class loci.poi.hpsf.PropertySetFactory

Creates a new summary information.

newUID() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

newVersionAvailable(String) - Method in class loci.formats.UpgradeChecker

Contact the OME registry and return true if a new version is available.

newVersionAvailable(String, String) - Method in class loci.formats.UpgradeChecker

Contact the OME registry and return true if a new version is available.

next() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

next() - Method in class loci.poi.hssf.usermodel.HSSFRow.CellIterator

next() - Method in class loci.poi.util.BinaryTree.BinaryTreeIterator

next() - Method in interface mdbtools.dbengine.Data

goto the next (or first) row

next() - Method in class mdbtools.dbengine.MemoryData

goto the next (or first) row

next() - Method in class mdbtools.dbengine.Tests.SimpleData

NEXT_FIRST - Static variable in class com.sun.media.imageioimpl.common.LZWStringTable

nextbbuf - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader

The next bit buffer, if bit stuffing occurred (i.e.

nextBits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

nextBits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

nextBlockOffs - Variable in class loci.formats.in.SDTInfo

Offset to the data block header of the next data block.

nextCamera - Variable in class loci.formats.in.FlexReader.FlexHandler

nextChannel - Variable in class loci.formats.in.LeicaHandler

nextChannel - Variable in class loci.formats.in.LeicaReader

nextChName - Variable in class loci.formats.in.BaseZeissReader

nextColumn - Variable in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

nextData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

nextData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

nextDetectChannel - Variable in class loci.formats.in.ZeissLSMReader

nextDetector - Variable in class loci.formats.in.LeicaReader

nextDetector - Variable in class loci.formats.in.ZeissLSMReader

nextDichroic - Variable in class loci.formats.in.FlexReader.FlexHandler

nextDichroic - Variable in class loci.formats.in.ZeissLSMReader

nextDichroicChannel - Variable in class loci.formats.in.ZeissLSMReader

nextEmWave - Variable in class loci.formats.in.BaseZeissReader

nextEmWave - Variable in class loci.formats.in.InCellReader.InCellHandler

nextExWave - Variable in class loci.formats.in.BaseZeissReader

nextExWave - Variable in class loci.formats.in.InCellReader.InCellHandler

nextFilter - Variable in class loci.formats.in.FlexReader.FlexHandler

nextFilter - Variable in class loci.formats.in.LeicaHandler

nextFilter - Variable in class loci.formats.in.ZeissLSMReader

nextFilterSet - Variable in class loci.formats.in.FlexReader.FlexHandler

nextGreater(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree

get the next larger node from the specified node

nextId - Variable in class loci.poi.hssf.usermodel.HSSFRow.CellIterator

nextIFDPointerPos - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

nextIllumChannel - Variable in class loci.formats.in.ZeissLSMReader

nextImage - Variable in class loci.formats.in.FlexReader.FlexHandler

nextLaser - Variable in class loci.formats.in.FlexReader.FlexHandler

nextLaser - Variable in class loci.formats.in.ZeissLSMReader

nextLesserThan8Bits(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

nextLetter() - Method in class loci.formats.ResourceNamer

Increments the internal alphabet pointer to the next element of the alphabet.

nextLineEnd(String, int) - Method in class jj2000.j2k.util.MsgPrinter

Returns the index of the last character of the next word, plus 1, or IS_NEWLINE if a newline character is encountered before the next word, or IS_EOS if the end of the string is ecnounterd before the next word.

nextNBits(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

nextObjective - Variable in class loci.formats.in.FlexReader.FlexHandler

nextPlate - Variable in class loci.formats.in.FlexReader.FlexHandler

nextPlate - Variable in class loci.formats.in.InCellReader.InCellHandler

nextRecord() - Method in class loci.poi.hssf.record.RecordInputStream

Moves to the next record in the stream.

nextReducible - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

nextROI - Variable in class loci.formats.in.LeicaHandler

nextRow - Variable in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

nextSegment(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Resets the MQ decoder to start a new segment.

nextSequenceNumber - Variable in class loci.formats.out.APNGWriter

nextSid - Variable in class loci.poi.hssf.record.RecordInputStream

nextSliderRef - Variable in class loci.formats.in.FlexReader.FlexHandler

nextSpace - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

nextState(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Return min of maxOffset or offset of first pixel different from pixel at bitOffset.

nextSubband() - Method in class jj2000.j2k.wavelet.Subband

Returns the next subband in the same resolution level, following the subband index order.

nextTag - Variable in class loci.formats.in.OpenlabReader

nextTile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in interface jj2000.j2k.image.ImgData

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.image.ImgDataAdapter

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.image.ImgDataJoiner

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.image.input.ImgReader

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.image.Tiler

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Advances to the next tile, in standard scan-line order (by rows then columns).

nextTile() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Advances to the next tile, in standard scan-line order (by rows then columns).

nextWord(String, int) - Method in class jj2000.j2k.util.MsgPrinter

Returns the position of the first character in the next word, starting from 'from', if a newline is encountered first then the index of the newline character plus 1 is returned.

nextXPos - Variable in class loci.formats.in.ScanrReader.ScanrHandler

nextYPos - Variable in class loci.formats.in.ScanrReader.ScanrHandler

nFiles - Variable in class loci.formats.in.FlexReader

nfMarkSeg - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Used to store which markers have been already read, by using flag bits.

NHZ - Static variable in class ome.units.UNITS

nidle - Variable in class jj2000.j2k.util.ThreadPool

The number of idle threads

NiftiReader - Class in loci.formats.in

NiftiReader is the file format reader for NIfTI files.

NiftiReader() - Constructor for class loci.formats.in.NiftiReader

Constructs a new NIfTI reader.

NIKON_XML_TAG - Static variable in class loci.formats.in.NikonElementsTiffReader

NIKON_XML_TAG_2 - Static variable in class loci.formats.in.NikonElementsTiffReader

NikonCodec - Class in loci.formats.codec

This class implements Nikon decompression.

NikonCodec() - Constructor for class loci.formats.codec.NikonCodec

NikonCodecOptions - Class in loci.formats.codec

Options for compressing and decompressing Nikon NEF data.

NikonCodecOptions() - Constructor for class loci.formats.codec.NikonCodecOptions

NikonElementsTiffReader - Class in loci.formats.in

NikonElementsTiffReader is the file format reader for TIFF files produced by Nikon Elements.

NikonElementsTiffReader() - Constructor for class loci.formats.in.NikonElementsTiffReader

NikonReader - Class in loci.formats.in

NikonReader is the file format reader for Nikon NEF (TIFF) files.

NikonReader() - Constructor for class loci.formats.in.NikonReader

Constructs a new Nikon reader.

NikonTiffReader - Class in loci.formats.in

NikonTiffReader is the file format reader for Nikon TIFF files.

NikonTiffReader() - Constructor for class loci.formats.in.NikonTiffReader

nImages - Variable in class loci.formats.in.ND2Handler

nInUse - Variable in class loci.common.CBZip2InputStream

NIOByteBufferProvider - Class in loci.common

Provides a facade to byte buffer allocation that enables FileChannel.map() usage on platforms where it's unlikely to give us problems and heap allocation where it is.

NIOByteBufferProvider(FileChannel, FileChannel.MapMode) - Constructor for class loci.common.NIOByteBufferProvider

Default constructor.

NIOFileHandle - Class in loci.common

A wrapper for buffered NIO logic that implements the IRandomAccess interface.

NIOFileHandle(File, String, int) - Constructor for class loci.common.NIOFileHandle

Creates a random access file stream to read from, and optionally to write to, the file specified by the File argument.

NIOFileHandle(File, String) - Constructor for class loci.common.NIOFileHandle

Creates a random access file stream to read from, and optionally to write to, the file specified by the File argument.

NIOFileHandle(String, String) - Constructor for class loci.common.NIOFileHandle

Creates a random access file stream to read from, and optionally to write to, a file with the specified name.

NIOInputStream - Class in loci.common

NIOInputStream provides methods for "intelligent" reading of files and byte arrays.

NIOInputStream(String) - Constructor for class loci.common.NIOInputStream

Constructs an NIOInputStream around the given file.

NIOInputStream(IRandomAccess) - Constructor for class loci.common.NIOInputStream

Constructs a random access stream around the given handle.

NIOInputStream(byte[]) - Constructor for class loci.common.NIOInputStream

Constructs a random access stream around the given byte array.

nl - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Number of layers in t he current tile

nl - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The number of layers in the coded data.

NL - Static variable in class loci.formats.in.ICSReader

Newline characters.

NL - Static variable in class loci.formats.tools.AsciiImage

nLPS - Static variable in class jj2000.j2k.entropy.decoder.MQDecoder

The indexes of the next LPS

nLPS - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

The indexes of the next LPS

nls - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of layers specifications

NM - Static variable in class ome.units.UNITS

nMPS - Static variable in class jj2000.j2k.entropy.decoder.MQDecoder

The indexes of the next MPS

nMPS - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

The indexes of the next MPS

NO_3I_MSG - Static variable in class loci.formats.in.SlideBook6Reader

NO_ASSOC_ERROR - Static variable in class org.libjpegturbo.turbojpeg.TJCompressor

NO_ASSOC_ERROR - Static variable in class org.libjpegturbo.turbojpeg.TJDecompressor

NO_BYTES - Static variable in class loci.poi.ddf.EscherTextboxRecord

NO_BYTES - Static variable in class loci.poi.ddf.UnknownEscherRecord

NO_FILL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

NO_FILL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

No background

NO_FONT - Static variable in class loci.poi.hssf.usermodel.HSSFRichTextString

Place holder for indicating that NO_FONT has been applied here

NO_J2K_MSG - Static variable in class loci.formats.services.JAIIIOServiceImpl

NO_JAI_MSG - Static variable in class loci.formats.in.TiffJAIReader

NO_JHDF_MSG - Static variable in class loci.formats.services.JHDFServiceImpl

NO_LICENSE_MSG - Static variable in class loci.formats.services.LuraWaveServiceImpl

Message to display if no LuraWave license code is given.

NO_LURAWAVE_MSG - Static variable in class loci.formats.services.LuraWaveServiceImpl

Message displayed if the LuraWave LWF decoder library is not found.

NO_NETCDF_MSG - Static variable in class loci.formats.services.NetCDFServiceImpl

NO_NIKON_MSG - Static variable in class loci.formats.in.LegacyND2Reader

NO_OME_XML_MSG - Static variable in class loci.formats.services.OMEXMLServiceImpl

NO_QT_MSG - Static variable in class loci.formats.gui.LegacyQTTools

NO_RAND_PART_A_STATE - Static variable in class loci.common.CBZip2InputStream

NO_RAND_PART_B_STATE - Static variable in class loci.common.CBZip2InputStream

NO_RAND_PART_C_STATE - Static variable in class loci.common.CBZip2InputStream

NO_WLZ_MSG - Static variable in class loci.formats.in.WlzReader

NO_WLZ_MSG - Static variable in class loci.formats.out.WlzWriter

NO_WLZ_MSG - Static variable in class loci.formats.services.WlzServiceImpl

nocolor - Static variable in class loci.poi.hssf.record.PrintSetupRecord

noCompTransf - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Flag indicating whether the decoder should skip the component transform

node - Variable in class loci.formats.gui.XMLCellRenderer.XMLItem

Node - Class in loci.poi.hssf.model

Private helper class, used to create a tree representation of the formula

Node(Ptg) - Constructor for class loci.poi.hssf.model.Node

NoExtensionFileFilter - Class in loci.formats.gui

A file filter that selects files with no extension, for use with a JFileChooser.

NoExtensionFileFilter() - Constructor for class loci.formats.gui.NoExtensionFileFilter

noFill - Variable in class loci.poi.hssf.usermodel.HSSFShape

NoFormatIDException - Exception in loci.poi.hpsf

This exception is thrown if a MutablePropertySet is to be written but does not have a formatID set (see MutableSection.setFormatID(ClassID) or MutableSection.setFormatID(byte[]).

NoFormatIDException() - Constructor for exception loci.poi.hpsf.NoFormatIDException

Constructor

NoFormatIDException(String) - Constructor for exception loci.poi.hpsf.NoFormatIDException

Constructor

NoFormatIDException(Throwable) - Constructor for exception loci.poi.hpsf.NoFormatIDException

Constructor

NoFormatIDException(String, Throwable) - Constructor for exception loci.poi.hpsf.NoFormatIDException

Constructor

noise(double) - Method in class loci.plugins.util.RecordedImageProcessor

NOISE_REDUCTION - Static variable in class loci.formats.in.CellSensReader

nomCBlkH - Variable in class jj2000.j2k.wavelet.Subband

The nominal code-block height

nomCBlkW - Variable in class jj2000.j2k.wavelet.Subband

The nominal code-block width

nominalMagnification - Variable in class ome.xml.model.Objective

NON_GRAPHICS_DOMAINS - Static variable in class loci.formats.FormatTools

List of non-graphics domains.

NON_HCS_DOMAINS - Static variable in class loci.formats.FormatTools

List of non-HCS domains.

NON_REV_FILTER_STR - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

The non-reversible default filter

NON_SPECIAL_DOMAINS - Static variable in class loci.formats.FormatTools

List of domains that do not require special handling.

nonAggregateQuery(Data) - Method in class mdbtools.dbengine.SelectEngine

non aggregate so simply return the column's wanted running any function requested

NonAggregateQuery - Class in mdbtools.dbengine.tasks

resolve the columns, num rows stays same

NonAggregateQuery(Task, Select, int[]) - Constructor for class mdbtools.dbengine.tasks.NonAggregateQuery

NONE - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for no component transformation.

NONE - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Identifier for no component transformation.

NONE - Static variable in class loci.formats.in.APNGReader

Filter types.

NONE - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

NoNextElementException - Exception in jj2000.j2k

This exception is thrown whenever a next???? method is called and there is no next element to return.

NoNextElementException() - Constructor for exception jj2000.j2k.NoNextElementException

Constructs a new NoNextElementException exception with no detail message.

NoNextElementException(String) - Constructor for exception jj2000.j2k.NoNextElementException

Constructs a new NoNextElementException exception with the specified detail message.

NonNegativeFloat - Class in ome.xml.model.primitives

A float whose constraints are bound to Java's 64-bit float (double) and a further non-negative restriction.

NonNegativeFloat(Double) - Constructor for class ome.xml.model.primitives.NonNegativeFloat

NonNegativeInteger - Class in ome.xml.model.primitives

An integer whose constraints are bound to Java's 32-bit signed integer type and a further non-negative restriction.

NonNegativeInteger(Integer) - Constructor for class ome.xml.model.primitives.NonNegativeInteger

NonNegativeLong - Class in ome.xml.model.primitives

An integer whose constraints are bound to Java's 64-bit signed integer type and a further non-negative restriction.

NonNegativeLong(Long) - Constructor for class ome.xml.model.primitives.NonNegativeLong

noOfDataBlocks - Variable in class loci.formats.in.SDTInfo

no_of_data_blocks valid only when in 0 ..

noOfMeasDescBlocks - Variable in class loci.formats.in.SDTInfo

noOrientation - Static variable in class loci.poi.hssf.record.PrintSetupRecord

NoPropertySetStreamException - Exception in loci.poi.hpsf

This exception is thrown if a format error in a property set stream is detected or when the input data do not constitute a property set stream.

NoPropertySetStreamException() - Constructor for exception loci.poi.hpsf.NoPropertySetStreamException

Constructor

NoPropertySetStreamException(String) - Constructor for exception loci.poi.hpsf.NoPropertySetStreamException

Constructor

NoPropertySetStreamException(Throwable) - Constructor for exception loci.poi.hpsf.NoPropertySetStreamException

Constructor

NoPropertySetStreamException(String, Throwable) - Constructor for exception loci.poi.hpsf.NoPropertySetStreamException

Constructor

nopt - Variable in class jj2000.j2k.entropy.encoder.LayersInfo

The number of optimized layers, or optimization points, without counting the extra one coming from the overall target bitrate

noQT - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating QuickTime for Java is not installed.

NORMAL_MENU - Static variable in class loci.plugins.shortcut.ShortcutPanel

Name of the 'Bio-Formats' submenu.

NORMAL_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy

normalize() - Method in class loci.formats.in.LeicaHandler.ROI

Vertices and transformation values are not stored in pixel coordinates.

normalize() - Method in class loci.formats.in.LIFReader.ROI

Vertices and transformation values are not stored in pixel coordinates.

normalized - Variable in class loci.formats.in.LeicaHandler.ROI

normalized - Variable in class loci.formats.in.LIFReader.ROI

normalizeData - Variable in class loci.formats.FormatReader

Whether or not to normalize float data.

normalizeDoubles(double[]) - Static method in class loci.common.DataTools

Normalize the given double array so that the minimum value maps to 0.0 and the maximum value maps to 1.0.

normalizeFilename(String, String) - Method in class loci.formats.in.OMETiffReader

normalizeFloats(float[]) - Static method in class loci.common.DataTools

Normalize the given float array so that the minimum value maps to 0.0 and the maximum value maps to 1.0.

noROIDescaling - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Ensures that no ROI de-scaling is performed.

NoSingleSectionException - Exception in loci.poi.hpsf

This exception is thrown if one of the PropertySet's convenience methods that require a single Section is called and the PropertySet does not contain exactly one Section.

NoSingleSectionException() - Constructor for exception loci.poi.hpsf.NoSingleSectionException

Constructor

NoSingleSectionException(String) - Constructor for exception loci.poi.hpsf.NoSingleSectionException

Constructor

NoSingleSectionException(Throwable) - Constructor for exception loci.poi.hpsf.NoSingleSectionException

Constructor

NoSingleSectionException(String, Throwable) - Constructor for exception loci.poi.hpsf.NoSingleSectionException

Constructor

noskip_del - Variable in class mdbtools.libmdb.MdbTableDef

noStitch - Variable in class loci.formats.FileStitcher

noSubband - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

noSubband - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

noSubresolutions - Variable in class loci.formats.in.MinimalTiffReader

NOT_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation

note - Variable in class loci.poi.hssf.model.CommentShape

note - Variable in class loci.poi.hssf.usermodel.HSSFComment

NOTE_HIDDEN - Static variable in class loci.poi.hssf.record.NoteRecord

Flag indicating that the comment is hidden (default)

NOTE_NAMES - Static variable in class loci.formats.in.BioRadReader

List of note types.

NOTE_TYPE_4D_SERIES - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_ARROW - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_COLLECT - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_FILE1 - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_FILE2 - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_LINE - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_LIVE - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_MERGE - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_NUMBER - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_SCALEBAR - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_STRUCTURE - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_THRUVIEW - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_USER - Static variable in class loci.formats.in.BioRadReader

NOTE_TYPE_VARIABLE - Static variable in class loci.formats.in.BioRadReader

NOTE_VISIBLE - Static variable in class loci.poi.hssf.record.NoteRecord

Flag indicating that the comment is visible

NotEqual() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and not Equal

NotEqualPtg - Class in loci.poi.hssf.record.formula

Ptg class to implement not equal

NotEqualPtg() - Constructor for class loci.poi.hssf.record.formula.NotEqualPtg

Creates new NotEqualPtg

NotEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.NotEqualPtg

NoteRecord - Class in loci.poi.hssf.record

NOTE: Comment Associated with a Cell (1Ch)

NoteRecord() - Constructor for class loci.poi.hssf.record.NoteRecord

Construct a new NoteRecord and fill its data with the default values

NoteRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NoteRecord

Constructs a NoteRecord and fills its fields from the supplied RecordInputStream.

notes - Variable in class loci.plugins.config.ConfigWindow

notes - Variable in class loci.plugins.config.LibraryEntry

notes - Static variable in class loci.poi.hssf.record.PrintSetupRecord

noteStrings - Variable in class loci.formats.in.BioRadReader

NoteStructureSubRecord - Class in loci.poi.hssf.record

Represents a NoteStructure (0xD) sub record.

NoteStructureSubRecord() - Constructor for class loci.poi.hssf.record.NoteStructureSubRecord

Construct a new NoteStructureSubRecord and fill its data with the default values

NoteStructureSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NoteStructureSubRecord

Constructs a NoteStructureSubRecord and sets its fields appropriately.

notifyListeners(StatusEvent) - Method in interface loci.common.StatusReporter

notifyListeners(CacheEvent) - Method in class loci.formats.cache.Cache

Informs listeners of a cache update.

notifyListeners(CacheEvent) - Method in class loci.formats.cache.CacheStrategy

Informs listeners of a cache update.

notifyListeners(StatusEvent) - Method in class loci.plugins.in.ImagePlusReader

notifyListeners(StatusEvent) - Method in class loci.plugins.in.ImportProcess

NotImplementedError - Error in jj2000.j2k

This exception is thrown whenever a feature or functionality that has not been implemented is calle.

NotImplementedError() - Constructor for error jj2000.j2k.NotImplementedError

Constructs a new NotImplementedError exception with the default detail message.

NotImplementedError(String) - Constructor for error jj2000.j2k.NotImplementedError

Constructs a new NotImplementedError exception with the specified detail message m.

noTransform - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Indicates whether subsampled, subregion is required, and offset is defined

noTransform - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

noTransform - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

noTransform - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

Indicates whether subsampled, subregion is required, and offset is defined

noTransform - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

Coordinate transform or sub selection is needed before encoding.

noTransform - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

Coordinate transform is not needed from the source (image stream) to the destination.

notYetImplemented(String) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Throws an UnsupportedOperationException with a message text telling which functionality is not yet implemented.

NPA - Static variable in class ome.units.UNITS

nPPMMarkSeg - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Counts number of PPM markers found in the header

nPPTMarkSeg - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Counts number of PPT markers found in the header

nQCCMarkSeg - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Counts number of QCC markers found in the header

nrc - Variable in class jj2000.j2k.roi.encoder.ROIMaskGenerator

Number of components

nRGNMarkSeg - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Counts number of RGN markers found in the header

nrOfWrittenBytes - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The number of written bytes so far, excluding any delayed 0xFF bytes.

nROIbp - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

Number of ROI magnitude bit-planes

nROIcoeff - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The number of ROI coefficients in the code-block

nROIcoeff - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

Number of ROI coefficients in the code-block

nROIcp - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Number of ROI coding passes

nRows - Variable in class loci.formats.in.FlexReader

NRRD_MAGIC_STRING - Static variable in class loci.formats.in.NRRDReader

NRRDReader - Class in loci.formats.in

File format reader for NRRD files; see http://teem.sourceforge.net/nrrd.

NRRDReader() - Constructor for class loci.formats.in.NRRDReader

Constructs a new NRRD reader.

nrROIs - Variable in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

Number of ROIs

NS - Static variable in class ome.units.UNITS

nSaved - Variable in class jj2000.j2k.entropy.encoder.MQCoder

Number of saved states.

nSlider - Variable in class loci.formats.gui.ImageViewer

nStep - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

The quantization step for non-reversible systems, normalized to a dynamic range of 1, for each resolution level and subband, as derived from the exponent-mantissa representation in the codestream.

nStreams - Variable in class loci.formats.tools.AmiraParameters

nt - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The total number of tiles.

nt - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The number of tiles in the image

nt - Variable in class jj2000.j2k.util.CodestreamManipulator

The number of tiles in the image

ntH - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The nominal tile height, in the hi-res reference grid

nTileParts - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The number of tile parts per tile

nTiles - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The number of tiles within the image

nTiles - Variable in class jj2000.j2k.ModuleSpec

The number of tiles

nTotTrunc - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The total number of truncation points

ntp - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

The number of truncation point for each layer

nTrunc - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The total number of truncation points from layer 1 to the last one in this object.

ntW - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The nominal tile width, in the hi-res reference grid

ntX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The number of tile in the horizontal direction

ntX - Variable in class jj2000.j2k.image.Tiler

The number of tiles in the horizontal direction.

ntY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The number of tiles in the vertical direction

ntY - Variable in class jj2000.j2k.image.Tiler

The number of tiles in the vertical direction.

NULL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

NullEscherSerializationListener - Class in loci.poi.ddf

Ignores all serialization events.

NullEscherSerializationListener() - Constructor for class loci.poi.ddf.NullEscherSerializationListener

NullLogger - Class in loci.poi.util

A logger class that strives to make it as easy as possible for developers to write log calls, while simultaneously making those calls as cheap as possible by performing lazy evaluation of the log message.

NullLogger() - Constructor for class loci.poi.util.NullLogger

nullOrFloat(byte[]) - Method in class ome.jxr.ifd.IFDMetadata

nullOrLong(byte[]) - Method in class ome.jxr.ifd.IFDMetadata

nullOrShort(byte[]) - Method in class ome.jxr.ifd.IFDMetadata

nullOrString(byte[]) - Method in class ome.jxr.ifd.IFDMetadata

num - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

The cached data elements.

num - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

The data elements of this box.

num - Variable in class loci.formats.in.BioRadReader.Note

num - Variable in class org.libjpegturbo.turbojpeg.TJScalingFactor

Numerator

num_catalog - Variable in class mdbtools.libmdb.MdbHandle

num_cols - Variable in class mdbtools.libmdb.MdbTableDef

NUM_COMPONENTS - Static variable in class loci.formats.gui.TwoChannelColorSpace

NUM_CTXTS - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The number of contexts used

NUM_CTXTS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The number of contexts used

NUM_DIMENSIONS - Static variable in class loci.formats.in.FV1000Reader

NUM_DOTS - Static variable in class loci.tests.IOTester

NUM_EMPTY_PASSES_IN_MS_BP - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The number of empty passes in the most significant bit-plane.

num_idxs - Variable in class mdbtools.libmdb.MdbTableDef

NUM_NON_BYPASS_MS_BP - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The number of most significant bit-planes where bypass mode is not to be used, even if bypass mode is on: 4.

NUM_PASSES - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The number of coding passes per bit-plane.

num_props - Variable in class mdbtools.libmdb.MdbCatalogEntry

num_real_idxs - Variable in class mdbtools.libmdb.MdbTableDef

NUM_RECORDS - Static variable in class loci.poi.hssf.record.RecordFactory

Deprecated.

num_rows - Variable in class mdbtools.libmdb.MdbTableDef

num_sargs - Variable in class mdbtools.libmdb.MdbColumn

numBands - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

numBands - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The number of components in the image

numBands - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

numBands - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

number - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

number - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

number - Variable in class loci.formats.in.OBFReader.Frame

NUMBER_OF_DECTECTORS - Static variable in class ome.specification.XMLMockObjects

The number of detectors created.

NUMBER_OF_DICHROICS - Static variable in class ome.specification.XMLMockObjects

The number of dichroics created.

NUMBER_OF_FILTERS - Static variable in class ome.specification.XMLMockObjects

The number of filters created.

NUMBER_OF_FRAMES - Static variable in class loci.formats.in.DicomReader

NUMBER_OF_INKS - Static variable in class loci.formats.tiff.IFD

NUMBER_OF_OBJECTIVES - Static variable in class ome.specification.XMLMockObjects

The number of objectives created.

numberBuffer - Variable in class loci.formats.in.AmiraReader.ASCII

NumberFilter - Class in loci.formats

NumberFilter is a helper filter for FilePattern.findPattern().

NumberFilter(String, String) - Constructor for class loci.formats.NumberFilter

Creates a filter for files containing a numerical block, sandwiched between the given strings.

NumberFormatIndexRecord - Class in loci.poi.hssf.record

The number format index record indexes format table.

NumberFormatIndexRecord() - Constructor for class loci.poi.hssf.record.NumberFormatIndexRecord

NumberFormatIndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NumberFormatIndexRecord

Constructs a NumberFormatIndex record and sets its fields appropriately.

numberOfBands - Variable in enum ome.jxr.image.FrequencyBand

numberOfChannels - Variable in enum ome.jxr.ifd.PixelFormat

numberOfEntries - Variable in class ome.jxr.ifd.IFDContainer

NumberPtg - Class in loci.poi.hssf.record.formula

Number Stores a floating point value in a formula value stored in a 8 byte field using IEEE notation

NumberPtg() - Constructor for class loci.poi.hssf.record.formula.NumberPtg

NumberPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.NumberPtg

Create a NumberPtg from a byte array read from disk

NumberPtg(String) - Constructor for class loci.poi.hssf.record.formula.NumberPtg

Create a NumberPtg from a string representation of the number Number format is not checked, it is expected to be validated in the parser that calls this method.

NumberRecord - Class in loci.poi.hssf.record

Contains a numeric cell value.

NumberRecord() - Constructor for class loci.poi.hssf.record.NumberRecord

Creates new NumberRecord

NumberRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NumberRecord

Constructs a Number record and sets its fields appropriately.

numberToLength - Static variable in class loci.poi.hpsf.Variant

numberToName - Static variable in class loci.poi.hpsf.Variant

Maps the numbers denoting the variant types to their corresponding variant type names.

numBits_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

current number bits output for each code

numBreaks - Variable in class loci.poi.hssf.record.PageBreakRecord

numBytes - Variable in class loci.formats.in.AliconaReader

Number of bytes per pixel (either 1 or 2).

numBytes - Variable in class loci.formats.out.QTWriter

Total number of pixel bytes.

numCb - Variable in class jj2000.j2k.wavelet.Subband

The number of code-blocks (in both directions) contained in this subband.

numChannels - Variable in class loci.formats.in.LeicaHandler

numChild - Variable in class loci.poi.hssf.model.Node

numComp - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

numComp - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

numComponents - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

numComponents - Variable in class ome.jxr.parser.DatastreamParser

numComponentsExtendedMinus16 - Variable in class ome.jxr.parser.DatastreamParser

numComponentsMinus1 - Variable in class ome.jxr.parser.DatastreamParser

numComps - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

numDatasets - Variable in class loci.formats.in.LeicaHandler

numDecompositionLevels - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The number of decomposition levels.

numDecompositionLevels - Variable in class loci.formats.codec.JPEG2000CodecOptions

The number of decomposition levels as would be provided to: J2KImageWriteParam.setNumDecompositionLevels(int) (WRITE).

numEntries - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

The value of the data elements.

numer - Variable in class loci.formats.tiff.TiffRational

Components of the rational's fractional representation.

numerator - Variable in class ome.jxr.ifd.JXRRational

NUMERICAL_APERTURE - Static variable in class loci.formats.in.CellSensReader

numericalAperture - Variable in class loci.formats.in.CellSensReader.Pyramid

NumericAnnotation - Class in ome.xml.model

NumericAnnotation() - Constructor for class ome.xml.model.NumericAnnotation

Default constructor.

NumericAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.NumericAnnotation

Constructs NumericAnnotation recursively from an XML DOM tree.

NumericAnnotation(NumericAnnotation) - Constructor for class ome.xml.model.NumericAnnotation

Copy constructor.

numFloatsPerSection - Variable in class loci.formats.in.DeltavisionReader

numfonts - Variable in class loci.poi.hssf.model.Workbook

numFormattingRuns() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

numFrames - Variable in class loci.formats.out.APNGWriter

numFramesPointer - Variable in class loci.formats.out.APNGWriter

numH - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

numHorTilesMinus1 - Variable in class ome.jxr.parser.DatastreamParser

numImages - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

numIntsPerSection - Variable in class loci.formats.in.DeltavisionReader

The number of ints in each extended header section.

numLayers - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

The number of layers.

numLowFields - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

The number of low tag numbered fields in the directory.

numMergedRegions - Variable in class loci.poi.hssf.model.Sheet

numNodes - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

NUMOP - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

The number of lossless transform operations

numPages() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the number of pages.

numPages() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the number of pages.

numParams - Variable in class loci.poi.hssf.record.formula.FuncPtg

NUMPF - Static variable in class org.libjpegturbo.turbojpeg.TJ

The number of pixel formats

numPixelBytes - Variable in class loci.formats.in.GatanReader

numPrec - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Maximum number of precincts : 1st dim: component index. 2nd dim: resolution level index.

numPrec - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Maximum number of precincts : 1st dim: tile index. 2nd dim: component index. 3nd dim: resolution level index.

numRegions - Variable in class loci.formats.in.LiFlimReader

numRows - Variable in class mdbtools.dbengine.functions.Count

NUMSAMP - Static variable in class org.libjpegturbo.turbojpeg.TJ

The number of chrominance subsampling options

numSeries - Variable in class loci.formats.in.LeicaReader

Number of series in the file.

numSeries - Variable in class loci.formats.in.ND2Handler

numSeries - Variable in class loci.formats.in.OpenlabReader

Number of series.

numStrings - Variable in class loci.poi.hssf.record.SSTRecordHeader

numStrings_ - Variable in class com.sun.media.imageioimpl.common.LZWStringTable

numTiles - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

numTiles - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

numTo26Sys(int) - Method in class loci.poi.hssf.util.RangeAddress

numtp - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

numTruncPnts - Variable in class jj2000.j2k.codestream.reader.PktInfo

The number of truncation points that appear in this packet, and all previous packets, for this code-block.

numUniqueStrings - Variable in class loci.poi.hssf.record.SSTRecordHeader

numV - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

The data elements in this box.

numVerTilesMinus1 - Variable in class ome.jxr.parser.DatastreamParser

numWritten - Variable in class loci.formats.out.LegacyQTWriter

Number of frames written.

numWritten - Variable in class loci.formats.out.QTWriter

numxfs - Variable in class loci.poi.hssf.model.Workbook

NV - Static variable in class ome.units.UNITS

nVldTrunc - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The number of valid truncation points

NW - Static variable in class ome.units.UNITS

nXFields - Variable in class loci.formats.in.NativeND2Reader

nXFields - Variable in class loci.formats.in.ND2Handler

nYFields - Variable in class loci.formats.in.ND2Handler

O

OB - Static variable in class loci.formats.in.DicomReader

OBFReader - Class in loci.formats.in

OBFReader is the file format reader for Imspector OBF files.

OBFReader() - Constructor for class loci.formats.in.OBFReader

OBFReader.Frame - Class in loci.formats.in

OBFReader.Frame() - Constructor for class loci.formats.in.OBFReader.Frame

OBFReader.Stack - Class in loci.formats.in

OBFReader.Stack() - Constructor for class loci.formats.in.OBFReader.Stack

OBJECT - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

OBJECT_DROPPED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating an object has been removed from the cache.

OBJECT_LOADED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating an object has been added to the cache.

object_name - Variable in class mdbtools.libmdb.MdbCatalogEntry

object_type - Variable in class mdbtools.libmdb.MdbCatalogEntry

OBJECT_TYPE_ARC - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_BUTTON - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_CHART - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_CHECKBOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_COMBO_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_COMMENT - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_COMMENT - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape

OBJECT_TYPE_DIALOG_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_EDIT_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_GROUP - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_GROUP_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_LABEL - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_LINE - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_LINE - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape

OBJECT_TYPE_LIST_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_MICROSOFT_OFFICE_DRAWING - Static variable in class loci.poi.hssf.model.PolygonShape

OBJECT_TYPE_MICROSOFT_OFFICE_DRAWING - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_OPTION_BUTTON - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_OVAL - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_OVAL - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape

OBJECT_TYPE_PICTURE - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_PICTURE - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape

OBJECT_TYPE_POLYGON - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RECTANGLE - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RECTANGLE - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape

OBJECT_TYPE_RESERVED1 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RESERVED2 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RESERVED3 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RESERVED4 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RESERVED5 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RESERVED6 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RESERVED7 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RESERVED8 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_RESERVED9 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_SCROLL_BAR - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_SPINNER - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_TEXT - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

OBJECT_TYPE_TEXT - Static variable in class loci.poi.hssf.usermodel.HSSFTextbox

objectArrayMaxLength - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

objectArrayMinLength - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

objectClass - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

objectDefaultValue - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

objectEnumerations - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

objective - Variable in class loci.formats.in.BDReader

Objective - Class in ome.xml.model

Objective() - Constructor for class ome.xml.model.Objective

Default constructor.

Objective(Element, OMEModel) - Constructor for class ome.xml.model.Objective

Constructs Objective recursively from an XML DOM tree.

Objective(Objective) - Constructor for class ome.xml.model.Objective

Copy constructor.

objective - Variable in class ome.xml.model.ObjectiveSettings

OBJECTIVE_MAG - Static variable in class loci.formats.in.CellSensReader

OBJECTIVE_NAME - Static variable in class loci.formats.in.CellSensReader

OBJECTIVE_TYPE - Static variable in class loci.formats.in.CellSensReader

objectiveIDs - Variable in class loci.formats.in.FlexReader

objectiveLinks - Variable in class ome.xml.model.Annotation

objectiveManufacturer - Variable in class loci.formats.in.FluoviewReader

objectiveModel - Variable in class loci.formats.in.ND2Handler

objectiveModels - Variable in class loci.formats.in.LIFReader

objectiveName - Variable in class loci.formats.in.CellSensReader.Pyramid

objectiveName - Variable in class loci.formats.in.FV1000Reader

objectiveNames - Variable in class loci.formats.in.CellSensReader.Pyramid

objectiveRefs - Variable in class loci.formats.in.FlexReader

objectives - Variable in class ome.xml.model.Instrument

objectiveSettings - Variable in class ome.xml.model.Image

ObjectiveSettings - Class in ome.xml.model

ObjectiveSettings() - Constructor for class ome.xml.model.ObjectiveSettings

Default constructor.

ObjectiveSettings(Element, OMEModel) - Constructor for class ome.xml.model.ObjectiveSettings

Constructs ObjectiveSettings recursively from an XML DOM tree.

ObjectiveSettings(ObjectiveSettings) - Constructor for class ome.xml.model.ObjectiveSettings

Copy constructor.

objectiveSettingsID - Variable in class loci.formats.in.ZeissCZIReader

objectiveTypes - Variable in class loci.formats.in.CellSensReader.Pyramid

ObjectLinkRecord - Class in loci.poi.hssf.record

Links text to an object on the chart or identifies it as the title.

ObjectLinkRecord() - Constructor for class loci.poi.hssf.record.ObjectLinkRecord

ObjectLinkRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ObjectLinkRecord

Constructs a ObjectLink record and sets its fields appropriately.

objectMaxValue - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

objectMinValue - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

ObjectProtectRecord - Class in loci.poi.hssf.record

Title: Object Protect Record

ObjectProtectRecord() - Constructor for class loci.poi.hssf.record.ObjectProtectRecord

ObjectProtectRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ObjectProtectRecord

Constructs a Protect record and sets its fields appropriately.

objectToObjectArray(Object) - Method in class loci.poi.util.POILogger

objectValueType - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

objGType - Variable in class loci.formats.services.WlzServiceImpl

objMag - Variable in class loci.formats.in.LeicaSCNReader.Image

objprotect - Variable in class loci.poi.hssf.model.Sheet

objRecord - Variable in class loci.poi.hssf.model.LineShape

objRecord - Variable in class loci.poi.hssf.model.PictureShape

objRecord - Variable in class loci.poi.hssf.model.PolygonShape

objRecord - Variable in class loci.poi.hssf.model.SimpleFilledShape

objRecord - Variable in class loci.poi.hssf.model.TextboxShape

ObjRecord - Class in loci.poi.hssf.record

The obj record is used to hold various graphic objects and controls.

ObjRecord() - Constructor for class loci.poi.hssf.record.ObjRecord

ObjRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ObjRecord

Constructs a OBJ record and sets its fields appropriately.

objType - Variable in class loci.formats.services.WlzServiceImpl

objTypeToShapeType(int) - Method in class loci.poi.hssf.model.SimpleFilledShape

OBS - Static variable in class loci.formats.gui.AWTImageTools

ImageObserver for working with AWT images.

ocr - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection

od - Variable in class loci.plugins.in.IdDialog

oddLocations - Variable in class loci.formats.in.DicomReader

OECF - Static variable in class loci.formats.tiff.IFD

off - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Offset of each piece of code-block's codewords in the file

OfficeXmlFileException - Exception in loci.poi.poifs.filesystem

This exception is thrown when we try to open a file that's actually an Office 2007+ XML file, rather than an OLE2 file (which is what POI works with)

OfficeXmlFileException(String) - Constructor for exception loci.poi.poifs.filesystem.OfficeXmlFileException

offLastROIPkt - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Offset of end of last packet containing ROI information

offset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The offset in the source ImageInputStream of the start of the data to be decompressed.

offset - Variable in class jj2000.j2k.image.DataBlk

The offset in the array of the top-left coefficient

offset - Variable in class jj2000.j2k.image.input.ImgReaderPGM

The offset of the raw pixel data in the PGM file

offset - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

The current offset of the buffer (which will differ from the offset of the file)

offset - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The offset in the array of the top-left coefficient

offset - Variable in class loci.formats.in.APNGReader.PNGBlock

offset - Variable in class loci.formats.in.BDReader

offset - Variable in class loci.formats.in.BioRadGelReader

offset - Variable in class loci.formats.in.BioRadReader

offset - Variable in class loci.formats.in.CellSensReader.Pyramid

offset - Variable in class loci.formats.in.ICSReader

Offset to pixel data.

offset - Variable in class loci.formats.in.IM3Reader.IM3Record

offset - Variable in class loci.formats.in.IvisionReader

offset - Variable in class loci.formats.in.KhorosReader

Image offset.

offset - Variable in class loci.formats.in.LeicaHandler.Detector

offset - Variable in class loci.formats.in.LeicaReader.Detector

offset - Variable in class loci.formats.in.MRWReader

Offset to image data.

offset - Variable in class loci.formats.in.NRRDReader

Offset to pixel data.

offset - Variable in class loci.formats.in.PCXReader

Offset to pixel data.

offset - Variable in class loci.formats.in.PGMReader

Offset to pixel data.

offset - Variable in class loci.formats.in.PSDReader

Offset to pixel data.

offset - Variable in class loci.formats.in.SDTInfo

offset - Variable in class loci.formats.in.TargaReader

offset - Variable in class loci.formats.services.JPEGTurboServiceImpl

offset - Variable in class loci.poi.hpsf.Section

offset - Variable in class loci.poi.hpsf.Section.PropertyListEntry

offset - Variable in class loci.poi.poifs.storage.DocumentBlock

offset - Variable in class loci.poi.poifs.storage.RawDataBlock

offset - Variable in class ome.jxr.ifd.IFDContainer

offset - Variable in class ome.units.unit.Unit

offset - Variable in class ome.xml.model.Detector

offset - Variable in class ome.xml.model.DetectorSettings

OFFSET_CF - Static variable in class loci.poi.hpsf.Thumbnail

Offset in bytes where the Clipboard Format starts in the byte[] returned by SummaryInformation.getThumbnail()

OFFSET_CFTAG - Static variable in class loci.poi.hpsf.Thumbnail

Offset in bytes where the Clipboard Format Tag starts in the byte[] returned by SummaryInformation.getThumbnail()

OFFSET_HEADER - Variable in class loci.poi.hpsf.MutablePropertySet

The length of the property set stream header.

OFFSET_WMFDATA - Static variable in class loci.poi.hpsf.Thumbnail

Offset in bytes where the Windows Metafile (WMF) image data starts in the byte[] returned by SummaryInformation.getThumbnail()

offsetOfFirstStream - Variable in class loci.formats.in.AmiraReader

offsetOfStream - Variable in class loci.formats.in.AmiraReader.HxZip

offsets - Variable in class loci.formats.in.AmiraReader.ASCII

offsets - Variable in class loci.formats.in.AmiraReader.HxRLE

offsets - Variable in class loci.formats.in.AVIReader

Offset to each plane.

offsets - Variable in class loci.formats.in.BaseZeissReader

offsets - Variable in class loci.formats.in.DicomReader

offsets - Variable in class loci.formats.in.FlexReader.FlexFile

offsets - Variable in class loci.formats.in.FluoviewReader

offsets - Variable in class loci.formats.in.ImarisReader

Offsets to each image.

offsets - Variable in class loci.formats.in.LIFReader

Offsets to memory blocks, paired with their corresponding description.

offsets - Variable in class loci.formats.in.MNGReader.SeriesInfo

offsets - Variable in class loci.formats.in.NAFReader

offsets - Variable in class loci.formats.in.NativeND2Reader

Array of image offsets.

offsets - Variable in class loci.formats.in.NativeQTReader

Offsets to each plane's pixel data.

offsets - Variable in class loci.formats.in.OpenlabRawReader

Offset to each image's pixel data.

offsets - Variable in class loci.formats.in.ZeissLMSReader

offsets - Variable in class loci.formats.out.QTWriter

Vector of plane offsets.

offX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The horizontal offsets of the upper-left corner of the current tile (not active tile) with respect to the canvas origin, in the component hi-res grid, for each component.

offY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The vertical offsets of the upper-left corner of the current tile (not active tile) with respect to the canvas origin, in the component hi-res grid, for each component.

OIB_SUFFIX - Static variable in class loci.formats.in.FV1000Reader

oibMapping - Variable in class loci.formats.in.FV1000Reader

File mappings for OIB file.

OIF_SUFFIX - Static variable in class loci.formats.in.FV1000Reader

ok() - Method in class loci.common.xml.ValidationErrorHandler

OLD_TOOLS - Static variable in class loci.formats.UpgradeChecker

Name of the previous versions' tools JAR.

ome - Variable in class ome.specification.XMLMockObjects

Root of the file.

OME - Class in ome.xml.model

OME() - Constructor for class ome.xml.model.OME

Default constructor.

OME(Element, OMEModel) - Constructor for class ome.xml.model.OME

Constructs OME recursively from an XML DOM tree.

OME(OME) - Constructor for class ome.xml.model.OME

Copy constructor.

ome.jxr - package ome.jxr

OME JPEG XR: OME library for reading the JPEG XR file format.

ome.jxr.constants - package ome.jxr.constants

Static values used in comparison operations during file and image metadata validation.

ome.jxr.ifd - package ome.jxr.ifd

Enums and classes used during metadata extraction from the IFD structure.

ome.jxr.image - package ome.jxr.image

Enums and classes used to model the image elements that are located in the codestream (e.g.

ome.jxr.parser - package ome.jxr.parser

Class hierarchy implementing the chain of responsibility pattern and used during parsing of the file, IFD and image header.

ome.metakit - package ome.metakit

ome.specification - package ome.specification

ome.units - package ome.units

ome.units.quantity - package ome.units.quantity

ome.units.unit - package ome.units.unit

ome.xml.meta - package ome.xml.meta

ome.xml.model - package ome.xml.model

ome.xml.model.enums - package ome.xml.model.enums

ome.xml.model.enums.handlers - package ome.xml.model.enums.handlers

ome.xml.model.primitives - package ome.xml.model.primitives

OME_TAG - Static variable in class ome.specification.XMLWriter

Identifies the OME tag.

OME_TOOLS - Static variable in class loci.formats.UpgradeChecker

Name of the OME tools JAR.

omeMeasurementFile - Variable in class loci.formats.in.CellVoyagerReader

omeMeta - Variable in class loci.formats.gui.ImageViewer

Attached OME metadata store, if available.

omeMeta - Variable in class loci.formats.out.OMETiffWriter

OMEModel - Interface in ome.xml.model

OMEModelImpl - Class in ome.xml.model

OMEModelImpl() - Constructor for class ome.xml.model.OMEModelImpl

OMEModelObject - Interface in ome.xml.model

OMETiffReader - Class in loci.formats.in

OMETiffReader is the file format reader for OME-TIFF files.

OMETiffReader() - Constructor for class loci.formats.in.OMETiffReader

Constructs a new OME-TIFF reader.

OMETiffReader.OMETiffPlane - Class in loci.formats.in

Structure containing details on where to find a particular image plane.

OMETiffReader.OMETiffPlane() - Constructor for class loci.formats.in.OMETiffReader.OMETiffPlane

OMETiffWriter - Class in loci.formats.out

OMETiffWriter is the file format writer for OME-TIFF files.

OMETiffWriter() - Constructor for class loci.formats.out.OMETiffWriter

OmeValidator - Class in ome.specification

Provides methods to validate OME instance documents against

OmeValidator() - Constructor for class ome.specification.OmeValidator

omexml - Variable in class loci.formats.in.OMEXMLReader

omeXML - Variable in class loci.plugins.in.ImportProcess

omexmlDir - Variable in class loci.tests.testng.FormatReaderTest

omeXmlMetadata - Variable in class loci.formats.in.FakeReader

OMEXMLMetadata - Interface in loci.formats.ome

OMEXMLMetadata - Interface in ome.xml.meta

A utility class for constructing and manipulating OME-XML DOMs.

OMEXMLMetadataImpl - Class in loci.formats.ome

OMEXMLMetadataImpl() - Constructor for class loci.formats.ome.OMEXMLMetadataImpl

OMEXMLMetadataImpl - Class in ome.xml.meta

A metadata store implementation for constructing and manipulating OME-XML DOMs for the current version of OME-XML.

OMEXMLMetadataImpl() - Constructor for class ome.xml.meta.OMEXMLMetadataImpl

OMEXMLMetadataRoot - Class in ome.xml.meta

A utility class for constructing and manipulating OME-XML DOMs.

OMEXMLMetadataRoot() - Constructor for class ome.xml.meta.OMEXMLMetadataRoot

Default constructor.

OMEXMLMetadataRoot(Element, OMEModel) - Constructor for class ome.xml.meta.OMEXMLMetadataRoot

Constructs OME recursively from an XML DOM tree.

OMEXMLMetadataRoot(OME) - Constructor for class ome.xml.meta.OMEXMLMetadataRoot

Construct from existing OME instance.

OMEXMLReader - Class in loci.formats.in

OMEXMLReader is the file format reader for OME-XML files.

OMEXMLReader() - Constructor for class loci.formats.in.OMEXMLReader

Constructs a new OME-XML reader.

OMEXMLReader.BinData - Class in loci.formats.in

OMEXMLReader.BinData(int, int) - Constructor for class loci.formats.in.OMEXMLReader.BinData

OMEXMLReader.OMEXMLHandler - Class in loci.formats.in

OMEXMLReader.OMEXMLHandler() - Constructor for class loci.formats.in.OMEXMLReader.OMEXMLHandler

omexmlService - Variable in class loci.formats.gui.ImageViewer

Service for working with OME-XML metadata.

omeXmlService - Variable in class loci.formats.in.FakeReader

OMEXMLService - Interface in loci.formats.services

omexmlService - Variable in class loci.tests.testng.FormatReaderTest

OMEXMLServiceImpl - Class in loci.formats.services

OMEXMLServiceImpl() - Constructor for class loci.formats.services.OMEXMLServiceImpl

Default constructor.

OMEXMLWriter - Class in loci.formats.out

OMEXMLWriter is the file format writer for OME-XML files.

OMEXMLWriter() - Constructor for class loci.formats.out.OMEXMLWriter

OMEXMLWriter.OMEHandler - Class in loci.formats.out

OMEXMLWriter.OMEHandler() - Constructor for class loci.formats.out.OMEXMLWriter.OMEHandler

omnivorousListeners - Variable in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

OnDemandLongArray - Class in loci.formats.tiff

OnDemandLongArray(RandomAccessInputStream) - Constructor for class loci.formats.tiff.OnDemandLongArray

ONE - Static variable in class loci.formats.AxisGuesser

oneD - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

Coding dimensionality: 1 for 2-dimensional, 0 for 1-dimensional.

oneHeaderPerSlice - Variable in class loci.formats.in.SpiderReader

oneTimepointPerSeries - Variable in class loci.formats.in.InCellReader

onFinish(ITestContext) - Method in class loci.tests.testng.DotTestListener

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

onRegistration(ServiceRegistry, Class) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

onStart(ITestContext) - Method in class loci.tests.testng.DotTestListener

onTestFailedButWithinSuccessPercentage(ITestResult) - Method in class loci.tests.testng.DotTestListener

onTestFailure(ITestResult) - Method in class loci.tests.testng.DotTestListener

onTestSkipped(ITestResult) - Method in class loci.tests.testng.DotTestListener

onTestStart(ITestResult) - Method in class loci.tests.testng.DotTestListener

onTestSuccess(ITestResult) - Method in class loci.tests.testng.DotTestListener

op - Variable in class mdbtools.libmdb.MdbSarg

op - Variable in class org.libjpegturbo.turbojpeg.TJTransform

Transform operation (one of OP_*)

OP_HFLIP - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

Flip (mirror) image horizontally.

OP_NONE - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

Do not transform the position of the image pixels.

OP_ROT180 - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

Rotate image 180 degrees.

OP_ROT270 - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

Rotate image counter-clockwise by 90 degrees.

OP_ROT90 - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

Rotate image clockwise by 90 degrees.

OP_TRANSPOSE - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

Transpose image (flip/mirror along upper left to lower right axis).

OP_TRANSVERSE - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

Transverse transpose image (flip/mirror along upper right to lower left axis).

OP_VFLIP - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

Flip (mirror) image vertically.

open(String) - Method in class loci.formats.gui.ImageViewer

Opens the given data source using the current format reader.

open(String, IFormatReader) - Method in class loci.formats.gui.ImageViewer

Opens from the given data source using the specified reader in a separate thread.

open(String, String) - Method in interface loci.formats.services.WlzService

Initializes the service for the given file path.

open(String, String) - Method in class loci.formats.services.WlzServiceImpl

open() - Method in class loci.formats.tools.EditTiffG

open(String) - Method in class loci.plugins.shortcut.ShortcutPanel

Opens the given location (e.g., file) with the Bio-Formats Importer plugin.

OPEN_ARROW - Static variable in class loci.formats.in.ZeissLSMReader

OPEN_BEZIER - Static variable in class loci.formats.in.ZeissLSMReader

OPEN_POLYLINE - Static variable in class loci.formats.in.ZeissLSMReader

openAllSeries() - Method in class loci.plugins.in.ImporterOptions

openAllSeriesBox - Variable in class loci.plugins.in.MainDialog

openBitmaskBytes(IFD, int, int) - Method in class loci.formats.in.FlowSightReader

Decode the whole IFD plane using bitmask compression

openBufferedImage(int) - Method in class loci.formats.in.TiffJAIReader

Obtains a BufferedImage from the given data source using JAI.

openBytes(int) - Method in class loci.formats.ChannelFiller

openBytes(int, byte[]) - Method in class loci.formats.ChannelFiller

openBytes(int, int, int, int, int) - Method in class loci.formats.ChannelFiller

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.ChannelFiller

openBytes(int) - Method in class loci.formats.ChannelMerger

openBytes(int, byte[]) - Method in class loci.formats.ChannelMerger

openBytes(int, int, int, int, int) - Method in class loci.formats.ChannelMerger

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.ChannelMerger

openBytes(int) - Method in class loci.formats.ChannelSeparator

openBytes(int, byte[]) - Method in class loci.formats.ChannelSeparator

openBytes(int, int, int, int, int) - Method in class loci.formats.ChannelSeparator

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.ChannelSeparator

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.DelegateReader

openBytes(int) - Method in class loci.formats.DimensionSwapper

openBytes(int, int, int, int, int) - Method in class loci.formats.DimensionSwapper

openBytes(int, byte[]) - Method in class loci.formats.DimensionSwapper

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.DimensionSwapper

openBytes(int) - Method in class loci.formats.FileStitcher

openBytes(int, byte[]) - Method in class loci.formats.FileStitcher

openBytes(int, int, int, int, int) - Method in class loci.formats.FileStitcher

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.FileStitcher

openBytes(int) - Method in class loci.formats.FormatReader

openBytes(int, byte[]) - Method in class loci.formats.FormatReader

openBytes(int, int, int, int, int) - Method in class loci.formats.FormatReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.FormatReader

openBytes(int) - Method in interface loci.formats.IFormatReader

Obtains the specified image plane from the current file as a byte array.

openBytes(int, int, int, int, int) - Method in interface loci.formats.IFormatReader

Obtains a sub-image of the specified image plane, whose upper-left corner is given by (x, y).

openBytes(int, byte[]) - Method in interface loci.formats.IFormatReader

Obtains the specified image plane from the current file into a pre-allocated byte array of (sizeX * sizeY * bytesPerPixel * RGB channel count).

openBytes(int, byte[], int, int, int, int) - Method in interface loci.formats.IFormatReader

Obtains a sub-image of the specified image plane into a pre-allocated byte array.

openBytes(int) - Method in class loci.formats.ImageReader

openBytes(int, int, int, int, int) - Method in class loci.formats.ImageReader

openBytes(int, byte[]) - Method in class loci.formats.ImageReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.ImageReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.AFIReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.AIMReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.AliconaReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.AmiraReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.AnalyzeReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.APLReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.APNGReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ARFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.AVIReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.BDReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.BIFormatReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.BioRadGelReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.BioRadReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.BioRadSCNReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.BMPReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.BrukerReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.BurleighReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.CanonRawReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.CellH5Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.CellomicsReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.CellSensReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.CellVoyagerReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.CellWorxReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.DeltavisionReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.DicomReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.DNGReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.Ecat7Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.EPSReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.FakeReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.FEIReader

openBytes(int) - Method in class loci.formats.in.FilePatternReader

openBytes(int, int, int, int, int) - Method in class loci.formats.in.FilePatternReader

openBytes(int, byte[]) - Method in class loci.formats.in.FilePatternReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.FilePatternReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.FitsReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.FlexReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.FlowSightReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.FluoviewReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.FujiReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.FV1000Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.GatanDM2Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.GatanReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.GelReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.GIFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.HamamatsuVMSReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.HISReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.HitachiReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.HRDGDFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.I2IReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ICSReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.IM3Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ImaconReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ImagicReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ImarisHDFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ImarisReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.IMODReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ImprovisionTiffReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ImspectorReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.InCell3000Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.InCellReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.INRReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.InveonReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.IPLabReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.IPWReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.IvisionReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.JEOLReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.JPEG2000Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.JPKReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.JPXReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.KhorosReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.KodakReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.L2DReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.LeicaReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.LeicaSCNReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.LiFlimReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.LIFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.LIMReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.MetamorphReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.MetamorphTiffReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.MIASReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.MicromanagerReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.MINCReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.MinimalTiffReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.MolecularImagingReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.MRCReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.MRWReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.NAFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.NativeND2Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.NativeQTReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.NDPIReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.NDPISReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.NiftiReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.NikonReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.NRRDReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.OBFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.OMETiffReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.OMEXMLReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.OpenlabRawReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.OpenlabReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.OperettaReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.OxfordInstrumentsReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PCIReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PCORAWReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PCXReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PDSReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PerkinElmerReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PGMReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PhotoshopTiffReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PictReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PovrayReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PQBinReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PrairieReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PSDReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.PyramidTiffReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.QuesantReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.RHKReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SBIGReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ScanrReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ScreenReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SDTReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SeikoReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SIFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SimplePCITiffReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SlideBook6Reader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SlidebookReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SlidebookTiffReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SMCameraReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SpiderReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.SVSReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.TargaReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.TCSReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.TextReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.TileJPEGReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.TillVisionReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.TopometrixReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.TrestleReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.UBMReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.UnisokuReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.VarianFDFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.VeecoReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.VGSAMReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.VisitechReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.VolocityClippingReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.VolocityReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.WATOPReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.WlzReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ZeissCZIReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ZeissLMSReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ZeissLSMReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ZeissTIFFReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ZeissZVIReader

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.in.ZipReader

openBytes(int) - Method in class loci.formats.MinMaxCalculator

openBytes(int, byte[]) - Method in class loci.formats.MinMaxCalculator

openBytes(int, int, int, int, int) - Method in class loci.formats.MinMaxCalculator

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.MinMaxCalculator

openBytes(int) - Method in class loci.formats.ReaderWrapper

openBytes(int, int, int, int, int) - Method in class loci.formats.ReaderWrapper

openBytes(int, byte[]) - Method in class loci.formats.ReaderWrapper

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.ReaderWrapper

openBytes(int) - Method in class loci.formats.TileStitcher

openBytes(int, byte[]) - Method in class loci.formats.TileStitcher

openBytes(int, int, int, int, int) - Method in class loci.formats.TileStitcher

openBytes(int, byte[], int, int, int, int) - Method in class loci.formats.TileStitcher

OpenBytesPerformanceTest - Class in loci.tests.testng

Performs various openBytes() performance tests.

OpenBytesPerformanceTest() - Constructor for class loci.tests.testng.OpenBytesPerformanceTest

OPENER_PLUGIN - Static variable in class loci.plugins.shortcut.ShortcutPanel

Name of plugin to use for opening dropped files.

openerIndex - Static variable in class loci.plugins.shortcut.ShortcutPanel

Index of plugin to use to open dropped files.

openFile(String) - Method in class loci.formats.in.LegacyND2Reader

openFile(String) - Method in class loci.formats.in.SlideBook6Reader

openFile(File) - Method in class loci.formats.tools.EditTiffG

openFile(String) - Static method in class loci.formats.tools.EditTiffG

openFiles - Variable in class loci.formats.in.MetamorphReader

openGreyscaleBytes(IFD, int, int) - Method in class loci.formats.in.FlowSightReader

Decode the whole IFD plane using greyscale compression

openImage(byte[], IFormatReader, int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given byte array, using the given IFormatReader to retrieve additional information.

openImage(int) - Method in class loci.formats.gui.BufferedImageReader

Obtains the specified image from the current file.

openImage(int, int, int, int, int) - Method in class loci.formats.gui.BufferedImageReader

Obtains a sub-image of the specified image, whose upper-left corner is given by (x, y).

openImage - Variable in class loci.formats.in.InCellReader.InCellHandler

openImage(String, Double) - Method in class loci.plugins.macro.LociFunctions

openImagePlus(String) - Static method in class loci.plugins.BF

openImagePlus(ImporterOptions) - Static method in class loci.plugins.BF

openImagePlus() - Method in class loci.plugins.in.ImagePlusReader

Opens one or more ImagePlus objects corresponding to the reader's associated options.

openImagePlus(String) - Method in class loci.plugins.macro.LociFunctions

OPENLAB_RAW_MAGIC_STRING - Static variable in class loci.formats.in.OpenlabRawReader

OpenlabRawReader - Class in loci.formats.in

OpenlabRawReader is the file format reader for Openlab RAW files.

OpenlabRawReader() - Constructor for class loci.formats.in.OpenlabRawReader

Constructs a new RAW reader.

OpenlabReader - Class in loci.formats.in

OpenlabReader is the file format reader for Openlab LIFF files.

OpenlabReader() - Constructor for class loci.formats.in.OpenlabReader

Constructs a new OpenlabReader.

OpenlabReader.PlaneInfo - Class in loci.formats.in

Helper class for storing plane info.

OpenlabReader.PlaneInfo() - Constructor for class loci.formats.in.OpenlabReader.PlaneInfo

openPlane(int, int, int, int, int) - Method in class loci.formats.FileStitcher

openPlane(int, int, int, int, int) - Method in class loci.formats.FormatReader

openPlane(int, int, int, int, int) - Method in interface loci.formats.IFormatReader

Obtains the specified image plane (or sub-image thereof) in the reader's native data structure.

openPlane(int, int, int, int, int) - Method in class loci.formats.ImageReader

openPlane(int, int, int, int, int) - Method in class loci.formats.in.FilePatternReader

openPlane(int, int, int, int, int) - Method in class loci.formats.in.ImageIOReader

openPlane(int, int, int, int, int) - Method in class loci.formats.in.LegacyQTReader

openPlane(int, int, int, int, int) - Method in class loci.formats.in.MNGReader

openPlane(int, int, int, int, int) - Method in class loci.formats.in.TextReader

openPlane(int, int, int, int, int) - Method in class loci.formats.in.TiffJAIReader

openPlane(int, int, int, int, int) - Method in class loci.formats.ReaderWrapper

openPlane(int, int, int, int, int) - Method in class loci.plugins.util.ImageProcessorReader

openProcessors(int) - Method in class loci.plugins.util.ImageProcessorReader

Creates an ImageJ image processor object for the image plane at the given position.

openProcessors(int, int, int, int, int) - Method in class loci.plugins.util.ImageProcessorReader

Returns an array of ImageProcessors that represent the given slice.

openRaw() - Method in class loci.formats.in.IM3Reader

Open the current series in raw-mode, returning the interleaved image bytes.

openRead(String) - Method in class loci.formats.services.WlzServiceImpl

openROIs(IMetadata, ImagePlus[]) - Static method in class loci.plugins.util.ROIHandler

Look for ROIs in the given OMEXMLMetadata; if any are present, apply them to the given images and display them in the ROI manager.

openROIs(IMetadata, ImagePlus[], boolean) - Static method in class loci.plugins.util.ROIHandler

Opens the rois and converts them into ImageJ Rois.

openStream(String) - Static method in class loci.common.ZipHandle

openSubImage(String, Double, Double, Double, Double, Double) - Method in class loci.plugins.macro.LociFunctions

openTextResource(String) - Static method in class loci.common.IniParser

Opens a buffered reader for the given resource.

openTextResource(String, Class<?>) - Static method in class loci.common.IniParser

Opens a buffered reader for the given resource.

openThumbBytes(int) - Method in class loci.formats.ChannelSeparator

openThumbBytes(int) - Method in class loci.formats.DimensionSwapper

openThumbBytes(int) - Method in class loci.formats.FileStitcher

openThumbBytes(int) - Method in class loci.formats.FormatReader

openThumbBytes(IFormatReader, int) - Static method in class loci.formats.FormatTools

Default implementation for IFormatReader.openThumbBytes(int).

openThumbBytes(int) - Method in interface loci.formats.IFormatReader

Obtains a thumbnail for the specified image plane from the current file, as a byte array.

openThumbBytes(int) - Method in class loci.formats.ImageReader

openThumbBytes(int) - Method in class loci.formats.in.AFIReader

openThumbBytes(int) - Method in class loci.formats.in.CellSensReader

openThumbBytes(int) - Method in class loci.formats.in.FilePatternReader

openThumbBytes(int) - Method in class loci.formats.in.LeicaSCNReader

openThumbBytes(int) - Method in class loci.formats.in.MinimalTiffReader

openThumbBytes(int) - Method in class loci.formats.in.NDPIReader

openThumbBytes(int) - Method in class loci.formats.in.SVSReader

openThumbBytes(int) - Method in class loci.formats.ReaderWrapper

openThumbImage(int) - Method in class loci.formats.gui.BufferedImageReader

Obtains a thumbnail for the specified image from the current file.

openThumbImage(String, Double) - Method in class loci.plugins.macro.LociFunctions

openThumbImagePlus(String) - Static method in class loci.plugins.BF

openThumbImagePlus(ImporterOptions) - Static method in class loci.plugins.BF

openThumbImagePlus() - Method in class loci.plugins.in.ImagePlusReader

openThumbImagePlus(String) - Method in class loci.plugins.macro.LociFunctions

openThumbProcessors(int) - Method in class loci.plugins.util.ImageProcessorReader

openWrite(String) - Method in class loci.formats.services.WlzServiceImpl

OperationPtg - Class in loci.poi.hssf.record.formula

defines a Ptg that is an operation instead of an operand

OperationPtg() - Constructor for class loci.poi.hssf.record.formula.OperationPtg

operator - Variable in class mdbtools.dbengine.sql.Condition

operator - Variable in class mdbtools.dbengine.sql.Equation

operators - Static variable in class mdbtools.dbengine.sql.Condition

operators - Static variable in class mdbtools.dbengine.sql.Equation

OperettaReader - Class in loci.formats.in

OperettaReader is the file format reader for PerkinElmer Operetta data.

OperettaReader() - Constructor for class loci.formats.in.OperettaReader

Constructs a new Operetta reader.

OperettaReader.OperettaHandler - Class in loci.formats.in

OperettaReader.OperettaHandler() - Constructor for class loci.formats.in.OperettaReader.OperettaHandler

OperettaReader.Plane - Class in loci.formats.in

OperettaReader.Plane() - Constructor for class loci.formats.in.OperettaReader.Plane

oppositeIndex(int) - Method in class loci.poi.util.BinaryTree

Get the opposite index of the specified index

OPT_BINDATA - Static variable in class loci.poi.hssf.record.NameRecord

OPT_BUILTIN - Static variable in class loci.poi.hssf.record.NameRecord

OPT_BYPASS - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The flag bit to indicate that selective arithmetic coding bypass should be used.

OPT_COMMAND_NAME - Static variable in class loci.poi.hssf.record.NameRecord

OPT_COMPLEX - Static variable in class loci.poi.hssf.record.NameRecord

OPT_CROP - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

This option will enable lossless cropping.

OPT_FUNCTION_NAME - Static variable in class loci.poi.hssf.record.NameRecord

OPT_GRAY - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

This option will discard the color data in the input image and produce a grayscale output image.

OPT_HIDDEN_NAME - Static variable in class loci.poi.hssf.record.NameRecord

OPT_MACRO - Static variable in class loci.poi.hssf.record.NameRecord

OPT_NOOUTPUT - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

This option will prevent TJTransformer.transform() from outputting a JPEG image for this particular transform.

OPT_PERFECT - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

This option will cause TJTransformer.transform() to throw an exception if the transform is not perfect.

OPT_PRED_TERM - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The flag bit to indicate that error resilience info is embedded on MQ termination.

OPT_PREFIX - Static variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The prefix for bit stream reader options: 'B'

OPT_PREFIX - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The prefix for header decoder options: 'H'

OPT_PREFIX - Static variable in class jj2000.j2k.codestream.writer.PktEncoder

The prefix for packet encoding options: 'P'

OPT_PREFIX - Static variable in class jj2000.j2k.entropy.decoder.EntropyDecoder

The prefix for entropy decoder optiojns: 'C'

OPT_PREFIX - Static variable in class jj2000.j2k.entropy.encoder.EntropyCoder

The prefix for entropy coder options: 'C'

OPT_PREFIX - Static variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

The prefix for rate allocation options: 'A'

OPT_PREFIX - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

The prefix for component transformation type: 'M'

OPT_PREFIX - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

The prefix for inverse component transformation options: 'M'

OPT_PREFIX - Static variable in class jj2000.j2k.quantization.dequantizer.Dequantizer

The prefix for dequantizer options: 'Q'

OPT_PREFIX - Static variable in class jj2000.j2k.quantization.quantizer.Quantizer

The prefix for quantizer options: 'Q'

OPT_PREFIX - Static variable in class jj2000.j2k.roi.encoder.ROIScaler

The prefix for ROI Scaler options: 'R'

OPT_PREFIX - Static variable in class jj2000.j2k.roi.ROIDeScaler

The prefix for ROI decoder options: 'R'

OPT_PREFIX - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilter

The prefix for wavelet filter options: 'F'

OPT_PREFIX - Static variable in class jj2000.j2k.wavelet.analysis.ForwardWT

The prefix for wavelet transform options: 'W'

OPT_RESET_MQ - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The flag bit to indicate that the MQ states for all contexts should be reset at the end of each non-bypass coding pass.

OPT_SEG_SYMBOLS - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The flag bit to indicate that a segmentation marker is to be inserted at the end of each normalization coding pass.

OPT_TERM_PASS - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The flag bit to indicate that regular termination should be used.

OPT_TRIM - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

This option will discard any partial MCU blocks that cannot be transformed.

OPT_VERT_STR_CAUSAL - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The flag bit to indicate the vertically stripe-causal context formation should be used.

optbrate - Variable in class jj2000.j2k.entropy.encoder.LayersInfo

The target bitrate to which specified layers should be optimized.

optGoto - Variable in class loci.poi.hssf.record.formula.AttrPtg

OPTICAL_PATH - Static variable in class loci.formats.in.CellSensReader

optiChoose - Variable in class loci.poi.hssf.record.formula.AttrPtg

optiIf - Variable in class loci.poi.hssf.record.formula.AttrPtg

optimal - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

Whether can write optimally.

optimalTileHeight - Variable in class loci.tests.testng.OpenBytesPerformanceTest

optimalTileWidth - Variable in class loci.tests.testng.OpenBytesPerformanceTest

optimize - Variable in class jj2000.j2k.entropy.encoder.EBCOTLayer

If true the `maxBytes' value is the hard maximum and the threshold is determined iteratively.

optimizeBitstreamLayer(int, float, int, int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

This function implements the rate-distortion optimization algorithm.

Option - Class in loci.plugins.prefs

Base class for an option for one of the plugins.

Option(String, boolean, String, String) - Constructor for class loci.plugins.prefs.Option

Constructs an option with the given parameters.

options - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The options that are turned on, as flag bits.

options - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The options bitmask to use in compression

options - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

options - Variable in class loci.formats.FormatWriter

The options if required.

options - Variable in class loci.formats.tiff.TiffSaver

The codec options if set.

options - Variable in class loci.plugins.in.DisplayHandler

options - Variable in class loci.plugins.in.ImporterDialog

options - Variable in class loci.plugins.in.ImportProcess

Associated importer options.

options - Variable in class loci.plugins.prefs.OptionsList

Table of options defining this set of preferences.

options - Variable in class loci.plugins.util.DataBrowser

options - Variable in class loci.poi.ddf.EscherRecord.EscherRecordHeader

options - Variable in class loci.poi.ddf.EscherRecord

options - Variable in class org.libjpegturbo.turbojpeg.TJTransform

Transform options (bitwise OR of one or more of OPT_*)

OptionsDialog - Class in loci.plugins.prefs

Base class for options dialogs.

OptionsDialog(OptionsList) - Constructor for class loci.plugins.prefs.OptionsDialog

Creates a new options dialog with the given associated options.

optionsList - Variable in class loci.plugins.prefs.OptionsDialog

Options list associated with the dialog.

OptionsList - Class in loci.plugins.prefs

Base class for ImageJ preferences for plugins.

OptionsList(String, Class<?>) - Constructor for class loci.plugins.prefs.OptionsList

OptionsList(IniList) - Constructor for class loci.plugins.prefs.OptionsList

optionsWindow - Variable in class loci.plugins.util.DataBrowser

optName - Static variable in class jj2000.j2k.entropy.CBlkSizeSpec

Name of the option

optName - Static variable in class jj2000.j2k.entropy.PrecinctSizeSpec

Name of the option

opts - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The options that are turned on, as flag bits.

or(int) - Method in class loci.plugins.util.RecordedImageProcessor

OR - Static variable in class mdbtools.dbengine.sql.Condition

order - Variable in class loci.common.NIOFileHandle

The buffer's byte ordering.

order(boolean) - Method in class loci.common.NIOInputStream

Sets the endianness of the stream.

order(boolean) - Method in class loci.common.RandomAccessInputStream

Sets the endianness of the stream.

order(boolean) - Method in class loci.common.RandomAccessOutputStream

Sets the endianness of the stream.

order - Variable in class loci.common.StreamHandle

Byte ordering of this stream.

order - Variable in class loci.formats.cache.CacheStrategy

The order in which planes should be loaded along each axis.

order - Variable in class loci.formats.gui.CacheComponent

Combo boxes for choosing planar ordering.

ORDER - Static variable in class loci.plugins.out.Exporter

ORDER_CHANGED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating new planar ordering.

ORDER_DEFAULT - Static variable in class loci.plugins.in.ImporterOptions

ORDER_VALUES - Static variable in class loci.formats.gui.CacheComponent

ORDER_XYCTZ - Static variable in class loci.plugins.in.ImporterOptions

ORDER_XYCZT - Static variable in class loci.plugins.in.ImporterOptions

ORDER_XYTCZ - Static variable in class loci.plugins.in.ImporterOptions

ORDER_XYTZC - Static variable in class loci.plugins.in.ImporterOptions

ORDER_XYZCT - Static variable in class loci.plugins.in.ImporterOptions

ORDER_XYZTC - Static variable in class loci.plugins.in.ImporterOptions

orderBy(Data) - Method in class mdbtools.dbengine.SelectEngine

sort the data todo: allow for sorting non-memory data

OrderBy - Class in mdbtools.dbengine.sql

OrderBy() - Constructor for class mdbtools.dbengine.sql.OrderBy

orderBy - Variable in class mdbtools.dbengine.sql.Select

orderCertain - Variable in class loci.formats.CoreMetadata

Indicates whether or not we are confident that the dimension order is correct.

orderIndex(int) - Method in class loci.formats.gui.CacheComponent

Converts enumerated order value to order chooser index.

OrderingListener - Class in loci.tests.testng

OrderingListener() - Constructor for class loci.tests.testng.OrderingListener

ORDERS - Static variable in class loci.formats.gui.CacheComponent

orderValue(int) - Method in class loci.formats.gui.CacheComponent

Converts order chooser index to enumerated order value.

org.libjpegturbo.turbojpeg - package org.libjpegturbo.turbojpeg

orientation - Variable in class jj2000.j2k.wavelet.Subband

The orientation of this subband (WT_ORIENT_LL, WT_ORIENT_HL, WT_ORIENT_LH, WT_ORIENT_HH).

orientation - Variable in class loci.formats.in.TargaReader

ORIENTATION - Static variable in class loci.formats.tiff.IFD

ORIENTATION_ROW_0_BOTTOM_COLUMN_0_LEFT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Orientation" tag.

ORIENTATION_ROW_0_BOTTOM_COLUMN_0_RIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Orientation" tag.

ORIENTATION_ROW_0_LEFT_COLUMN_0_BOTTOM - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Orientation" tag.

ORIENTATION_ROW_0_LEFT_COLUMN_0_TOP - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Orientation" tag.

ORIENTATION_ROW_0_RIGHT_COLUMN_0_BOTTOM - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Orientation" tag.

ORIENTATION_ROW_0_RIGHT_COLUMN_0_TOP - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Orientation" tag.

ORIENTATION_ROW_0_TOP_COLUMN_0_LEFT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Orientation" tag.

ORIENTATION_ROW_0_TOP_COLUMN_0_RIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Orientation" tag.

orientationNames - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

origBitDepth - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

origin - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

original - Variable in class loci.formats.in.DNGReader

The original IFD.

original - Variable in class loci.formats.in.NikonReader

The original IFD.

ORIGINAL_FRAME_RATE - Static variable in class loci.formats.in.CellSensReader

ORIGINAL_METADATA_NS - Static variable in class loci.formats.meta.OriginalMetadataAnnotation

originalColorModel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

originalColorModel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

originalDate - Variable in class loci.formats.in.DicomReader

originalDimension - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

originalID - Variable in class loci.plugins.in.FilePatternDialog

originalInstance - Variable in class loci.formats.in.DicomReader

originalMetadata - Variable in class loci.formats.in.CellSensReader.Pyramid

OriginalMetadataAnnotation - Class in loci.formats.meta

OriginalMetadataAnnotation() - Constructor for class loci.formats.meta.OriginalMetadataAnnotation

originalNumXTiles - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The orginal number tiles in X direction.

originalOrder - Variable in class loci.formats.FileStitcher.ExternalSeries

originalRegion - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

originalSampleModel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

originalSampleModel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

originalSampleModel - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The sample model for the original image.

originalSeries - Variable in class loci.formats.in.DicomReader

originalSrcHeight - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

The original value of srcHeight.

originalSrcMinX - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

The original value of srcMinX.

originalSrcMinY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

The original value of srcMinY.

originalSrcWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

The original value of srcWidth.

originalTime - Variable in class loci.formats.in.DicomReader

originX - Variable in class loci.formats.in.CellSensReader.Pyramid

originX - Variable in class loci.formats.in.PerkinElmerReader

originX - Variable in class loci.formats.in.VarianFDFReader

originX - Variable in class loci.formats.in.ZeissLSMReader

originY - Variable in class loci.formats.in.CellSensReader.Pyramid

originY - Variable in class loci.formats.in.PerkinElmerReader

originY - Variable in class loci.formats.in.VarianFDFReader

originY - Variable in class loci.formats.in.ZeissLSMReader

originZ - Variable in class loci.formats.in.PerkinElmerReader

originZ - Variable in class loci.formats.in.VarianFDFReader

originZ - Variable in class loci.formats.in.ZeissLSMReader

origname - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo

origPtr - Variable in class loci.common.CBZip2InputStream

INdex in zptr[] of original string after sorting.

origSigned - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

origSrc - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The image data reader.

OS_MACINTOSH - Static variable in class loci.poi.hpsf.PropertySet

If the OS version field holds this value the property set stream was created on a Macintosh system.

OS_WIN16 - Static variable in class loci.poi.hpsf.PropertySet

If the OS version field holds this value the property set stream was created on a 16-bit Windows system.

OS_WIN32 - Static variable in class loci.poi.hpsf.PropertySet

If the OS version field holds this value the property set stream was created on a 32-bit Windows system.

osVersion - Variable in class loci.poi.hpsf.PropertySet

Specifies the version of the operating system that created this PropertySet.

OTHER_KEYS - Static variable in class loci.formats.in.ICSReader

otherChannels - Variable in class loci.plugins.util.RecordedImageProcessor

otherCOMMarkSeg - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Other COM marker segments specified in the command line

otherLength - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

The length not counted by the orginal JJ2000 packages.

out - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

The file to write

out - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

The byte based output

out - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The ByteOutputBuffer used to write the compressed bit stream.

out - Variable in class jj2000.j2k.util.StreamMsgLogger

The 'out' stream

out - Variable in class loci.formats.FormatWriter

Current file.

out - Variable in class loci.formats.tiff.TiffSaver

Output stream to use when saving TIFF data.

outBlk - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Output block used instead of the one provided as an argument if the later is DataBlkFloat.

outdata - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Buffer for each component of output data

outdtype - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Type of the current output data

outHex(int, InputStream, PrintStream) - Method in class loci.poi.ddf.EscherDump

Dumps out a hex value by reading from a input stream.

outlevel - Static variable in class loci.poi.hssf.record.ColumnInfoRecord

outlineLevel - Static variable in class loci.poi.hssf.record.RowRecord

output - Variable in class loci.formats.gui.DataConverter

output - Variable in class loci.formats.Memoizer.KryoDeser

output_ - Variable in class com.sun.media.imageioimpl.common.BitFile

OUTPUT_CLR_FMT_MAX - Static variable in class ome.jxr.constants.Image

outputBitdepth - Variable in class ome.jxr.parser.DatastreamParser

outputClrFmt - Variable in class ome.jxr.parser.DatastreamParser

OutputColorFormat - Enum in ome.jxr.image

Enumeration of available color format entries.

OutputColorFormat(Integer...) - Constructor for enum ome.jxr.image.OutputColorFormat

outputFile - Variable in class loci.common.RandomAccessOutputStream

outputOrder - Variable in class loci.formats.out.ICSWriter

outputOrder - Variable in class loci.formats.out.V3DrawWriter

outputOrder - Variable in class loci.formats.out.WlzWriter

outputPath - Variable in class loci.formats.out.CellH5Writer

OutputStreamAdapter - Class in com.sun.media.imageioimpl.plugins.clib

OutputStreamAdapter(ImageOutputStream) - Constructor for class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter

outStream - Variable in class loci.common.StreamHandle

OutputStream to be used for writing.

outT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The output stream used, for each thread

overfl - Variable in class loci.formats.in.SDTInfo

overflowCorrFactor - Variable in class loci.formats.in.SDTInfo

OVERLAP_MODE_RESERVED - Static variable in class ome.jxr.constants.Image

overlapMode - Variable in class ome.jxr.parser.DatastreamParser

overlaps - Variable in class loci.formats.in.TrestleReader

overlayFiles - Variable in class loci.formats.in.MIASReader

overlayPlanes - Variable in class loci.formats.in.MIASReader

overruns - Variable in class loci.formats.in.SDTInfo

No of Fifo overruns when > 0 fcs curve & endTime are not valid.

OVERVIEW_IMAGE - Static variable in class loci.formats.in.CellSensReader

overwriteComment(RandomAccessInputStream, Object) - Method in class loci.formats.tiff.TiffSaver

Convenience method for overwriting a file's first ImageDescription.

overwriteComment(String, String) - Static method in class loci.formats.tools.TiffComment

Overwrites the comment.

overwriteDimensions(MetadataRetrieve) - Method in class loci.formats.out.ICSWriter

overwriteIFDValue(RandomAccessInputStream, int, int, Object) - Method in class loci.formats.tiff.TiffSaver

Surgically overwrites an existing IFD value with the given one.

overwriteLastIFDOffset(RandomAccessInputStream) - Method in class loci.formats.tiff.TiffSaver

OW - Static variable in class loci.formats.in.DicomReader

OXFORD_MAGIC_STRING - Static variable in class loci.formats.in.OxfordInstrumentsReader

OxfordInstrumentsReader - Class in loci.formats.in

OxfordInstrumentsReader is the file format reader for Oxford Instruments .top files.

OxfordInstrumentsReader() - Constructor for class loci.formats.in.OxfordInstrumentsReader

Constructs a new Oxford Instruments reader.

P

p - Variable in class loci.formats.in.BioRadReader.Note

p - Variable in class loci.plugins.in.SeriesDialog

p - Variable in class loci.plugins.in.ThumbLoader

P_KEY - Static variable in class loci.formats.in.LiFlimReader

PA - Static variable in class ome.units.UNITS

pack() - Method in class loci.plugins.util.DataBrowser

Overridden pack method to allow us to delay initial window sizing.

PackageUtil - Class in com.sun.media.imageioimpl.common

PackageUtil() - Constructor for class com.sun.media.imageioimpl.common.PackageUtil

packBits(byte[], int, int, byte[], int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsCompressor

Performs PackBits compression for a single buffer of data.

PACKBITS - Static variable in class loci.formats.in.PhotoshopTiffReader

PackbitsCodec - Class in loci.formats.codec

This class implements packbits decompression.

PackbitsCodec() - Constructor for class loci.formats.codec.PackbitsCodec

packetData - Variable in class jj2000.j2k.util.CodestreamManipulator

Buffers containing the packet data

packetHeaders - Variable in class jj2000.j2k.util.CodestreamManipulator

Buffers contaning the packet headers

packetIdx - Variable in class jj2000.j2k.codestream.reader.PktInfo

Index of the packet

packetIdx - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

The packet index (when start of packet markers i.e.

packetPerTilePart - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies the maximum number of packets to be put into one tile-part.

packetWritable - Variable in class jj2000.j2k.codestream.writer.PktEncoder

Whether or not the current packet is writable

packPacketHeaderInMain - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Indicates that the packet headers are packed in the main header.

packPacketHeaderInTile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Indicates that the packet headers are packed in the tiles' headers.

PAD - Static variable in class loci.formats.codec.Base64Codec

pad - Variable in class loci.formats.out.QTWriter

Number of padding bytes in each row.

PAD - Static variable in class loci.plugins.config.ConfigWindow

pad4(byte[]) - Static method in class loci.poi.hpsf.Util

Pads a byte array with 0x00 bytes so that its length is a multiple of 4.

pad4(char[]) - Static method in class loci.poi.hpsf.Util

Pads a character array with 0x0000 characters so that its length is a multiple of 4.

pad4(String) - Static method in class loci.poi.hpsf.Util

Pads a string with 0x0000 characters so that its length is a multiple of 4.

PAD_SEQ - Static variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

The alternating sequence of 0's and 1's used for byte padding

paddedMaskLine - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

A line or column of the mask with padding

padding - Variable in class loci.formats.in.UBMReader

PADDING_BYTES - Static variable in class loci.formats.out.AVIWriter

paddingZeros - Variable in class loci.plugins.in.FilePatternDialog

padImage(BufferedImage, int, int) - Static method in class loci.formats.gui.AWTImageTools

Pads (or crops) the image to the given width and height.

padImage(byte[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools

Pads (or crops) the byte array to the given width and height.

padImage(short[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools

Pads (or crops) the short array to the given width and height.

padImage(int[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools

Pads (or crops) the int array to the given width and height.

padImage(float[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools

Pads (or crops) the float array to the given width and height.

padImage(double[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools

Pads (or crops) the double array to the given width and height.

PAETH - Static variable in class loci.formats.in.APNGReader

page - Variable in class loci.formats.in.SDTInfo

page() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current page number

page() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current page number

PAGE_NAME - Static variable in class loci.formats.tiff.IFD

PAGE_NUMBER - Static variable in class loci.formats.tiff.IFD

PageBreakRecord - Class in loci.poi.hssf.record

Record that contains the functionality page breaks (horizontal and vertical)

PageBreakRecord() - Constructor for class loci.poi.hssf.record.PageBreakRecord

PageBreakRecord(short) - Constructor for class loci.poi.hssf.record.PageBreakRecord

PageBreakRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PageBreakRecord

PageBreakRecord.Break - Class in loci.poi.hssf.record

Since both records store 2byte integers (short), no point in differentiating it in the records.

PageBreakRecord.Break(short, short, short) - Constructor for class loci.poi.hssf.record.PageBreakRecord.Break

paged - Variable in class loci.poi.hssf.record.WindowTwoRecord

paint - Variable in class loci.poi.hssf.usermodel.EscherGraphics2d

paint(Graphics) - Method in class loci.tests.ImageTester

paintComponent(Graphics) - Method in class loci.formats.gui.CacheIndicator

pairs - Variable in class ome.xml.model.MapPairs

PAIRSNAMESPACE - Static variable in class ome.xml.model.MapPairs

palette - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

palette - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

palette - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

palette - Variable in class loci.formats.in.BMPReader

The palette for indexed color images.

PALETTE - Static variable in class loci.formats.in.ZeissLSMReader

palette - Variable in class loci.poi.hssf.usermodel.HSSFPalette

PALETTE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

PALETTE_COLOR - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

PALETTE_GRAYSCALE - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

PALETTE_SIZE - Static variable in class loci.poi.hssf.util.HSSFColor

PaletteBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is designed to represent a palette box for JPEG 2000 JP2 file format.

PaletteBox(IndexColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Constructs a PlatteBox from an IndexColorModel.

PaletteBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Constructs a PlatteBox from an org.w3c.dom.Node.

PaletteBox(int, byte[], byte[][]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Constructs a PlatteBox from the provided length, bit depths of the color components and the LUT.

PaletteBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Constructs a PlatteBox from the provided byte array.

PaletteBuilder - Class in com.sun.media.imageioimpl.common

This class implements the octree quantization method as it is described in the "Graphics Gems" (ISBN 0-12-286166-3, Chapter 4, pages 297-293)

PaletteBuilder(RenderedImage) - Constructor for class com.sun.media.imageioimpl.common.PaletteBuilder

PaletteBuilder(RenderedImage, int) - Constructor for class com.sun.media.imageioimpl.common.PaletteBuilder

PaletteBuilder.ColorNode - Class in com.sun.media.imageioimpl.common

The node of color tree.

PaletteBuilder.ColorNode() - Constructor for class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

paletteIndex - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

palettepos - Variable in class loci.poi.hssf.model.WorkbookRecordList

PaletteRecord - Class in loci.poi.hssf.record

PaletteRecord - Supports custom palettes.

PaletteRecord() - Constructor for class loci.poi.hssf.record.PaletteRecord

PaletteRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PaletteRecord

Constructs a PaletteRecord record and sets its fields appropriately.

paletteSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

paletteType - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

pane - Variable in class loci.formats.gui.ImageViewer

PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.model.Sheet

PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.util.PaneInformation

Constant for active pane being the lower left

PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.model.Sheet

PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.util.PaneInformation

Constant for active pane being the lower right

PANE_UPPER_LEFT - Static variable in class loci.poi.hssf.model.Sheet

PANE_UPPER_LEFT - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

PANE_UPPER_LEFT - Static variable in class loci.poi.hssf.util.PaneInformation

Constant for active pane being the upper left

PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.model.Sheet

PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.util.PaneInformation

Constant for active pane being the upper right

PaneInformation - Class in loci.poi.hssf.util

Holds information regarding a split plane or freeze plane for a sheet.

PaneInformation(short, short, short, short, byte, boolean) - Constructor for class loci.poi.hssf.util.PaneInformation

panel - Variable in class loci.plugins.util.SearchableWindow

PaneRecord - Class in loci.poi.hssf.record

Describes the frozen and unfozen panes.

PaneRecord() - Constructor for class loci.poi.hssf.record.PaneRecord

PaneRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PaneRecord

Constructs a Pane record and sets its fields appropriately.

param - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

param - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The ImageReadParam to create this renderedImage.

param - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

param - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

paramClass - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

PARAMETER_KEYS - Static variable in class loci.formats.in.ICSReader

parameterFile - Variable in class loci.formats.in.JEOLReader

paramFile - Variable in class loci.formats.in.PCORAWReader

params - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Dequantization parameters of all subbands and all components in the current tile.

params - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer

The decoding parameters of the dequantizer

PARAMS - Static variable in class loci.plugins.config.ConfigWindow

parent - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The reference to the parent of this subband.

parent - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The reference to the parent of this subband.

parent - Variable in class loci.poi.hssf.usermodel.HSSFShape

Parent - Interface in loci.poi.poifs.property

Behavior for parent (directory) properties

parentDimension - Variable in class loci.formats.Modulo

ParenthesisPtg - Class in loci.poi.hssf.record.formula

While formula tokens are stored in RPN order and thus do not need parenthesis for precedence reasons, Parenthesis tokens ARE written to ensure that user entered parenthesis are displayed as-is on reading back Avik Sengupta <lists@aviksengupta.com> Andrew C.

ParenthesisPtg() - Constructor for class loci.poi.hssf.record.formula.ParenthesisPtg

ParenthesisPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ParenthesisPtg

parentNames - Variable in class loci.formats.in.FEITiffReader.FEIHandler

parentParser - Variable in class ome.jxr.parser.Parser

parentQName - Variable in class loci.formats.in.FlexReader.FlexHandler

parents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

The table to link the child to its parent.

parents - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

The table to link the child to its parent.

parentTag - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

The parent TIFFTag of this directory.

parentType - Variable in class loci.formats.Modulo

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Parses the data elements from the byte array.

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Parse the channel definitions from the content data array.

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Parse the component mapping from the provided content data array.

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Parses the content of this box from its content byte array.

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Parse the data elements from the byte array of the content.

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Parse the data elements from the provided content data array.

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Parses the data elements from the provided data array.

parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

Parses the data elements from the provided content data array.

parse(int, long, long) - Method in class loci.formats.in.NativeQTReader

Parse all of the atoms in the file.

parse(Element) - Method in class loci.formats.in.PrairieMetadata.Frame

Parses metadata from the given Frame element.

parse(Element) - Method in class loci.formats.in.PrairieMetadata.PFile

Parses metadata from the given File element.

parse(Element) - Method in class loci.formats.in.PrairieMetadata.Sequence

Parses metadata from the given Sequence element.

parse() - Method in class loci.poi.hssf.model.FormulaParser

API call to execute the parsing of the formula

parse(String) - Method in class loci.tests.testng.TiffWriterTest

parse() - Method in class ome.jxr.parser.DatastreamParser

parse(long) - Method in class ome.jxr.parser.FileParser

parse() - Method in class ome.jxr.parser.IFDParser

parse() - Method in class ome.jxr.parser.Parser

parse(long) - Method in class ome.jxr.parser.Parser

parseAlayers(String, float) - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Convenience method that parses the 'Alayers' option.

parseAndFind(BufferedRandomAccessFile) - Method in class jj2000.j2k.util.CodestreamManipulator

This method parses the codestream for SOT, SOP and EPH markers and removes header header bits signalling SOP and EPH markers if packed packet headers are used

parseApplicationTags() - Method in class loci.formats.in.ZeissLSMReader

parseArg(String) - Method in class loci.plugins.in.ImporterOptions

Parses the plugin argument for parameter values.

parseArray(String) - Method in class loci.formats.in.VarianFDFReader

Split a String that represents an array into individual elements.

parseAttributes() - Method in class loci.formats.in.ImarisHDFReader

parseAttributesAndVariables(List<Group>) - Method in class loci.formats.services.NetCDFServiceImpl

Recursively parses attribute and variable paths, filling attributeList and variableList.

parseBoxes() - Method in class loci.formats.in.JPEG2000MetadataParser

Parses the JPEG 2000 JP2 metadata boxes.

parseByteArray(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Parses the byte array expressed by a string.

parseCellObjects() - Method in class loci.formats.in.CellH5Reader

parseCFG(Document) - Method in class loci.formats.in.PrairieMetadata

Parses metadata from Prairie CFG file.

parseChannelData(Location) - Method in class loci.formats.in.BDReader

parseChannels() - Method in class loci.formats.in.PrairieMetadata

Parses details of the activated channels into the PrairieMetadata.activeChannels data structure from the "channel" entry of the configuration.

parseChannelTag() - Method in class loci.formats.in.LeicaReader

parseChunks(IRandomAccess) - Method in class loci.formats.in.IM3Reader.ContainerRecord

Parse and return the sub-records for the record container

parseColor(byte, byte, byte) - Static method in class loci.formats.in.BaseZeissReader

parseColor(String) - Method in class loci.formats.in.FakeReader

parseColor(byte, byte, byte) - Static method in class loci.formats.in.ZeissTIFFHandler

parseColorSpace(byte[]) - Method in class ome.jxr.ifd.IFDMetadata

parseComment() - Method in class loci.formats.in.FluoviewReader

parseCommentGeneric(String) - Method in class loci.formats.in.TiffReader

parseCommentImageJ(String) - Method in class loci.formats.in.TiffReader

parseCommentMetamorph(String) - Method in class loci.formats.in.TiffReader

parseConfigFile(String) - Method in class loci.tests.testng.ConfigurationTree

parseContiguousCodestream(long) - Method in class loci.formats.in.JPEG2000MetadataParser

Parses the JPEG 2000 codestream metadata.

parseCSVFile(String) - Method in class loci.formats.in.PerkinElmerReader

parseDatabase() - Method in interface loci.formats.services.MDBService

Read all tables from a pre-initialized .mdb files.

parseDatabase() - Method in class loci.formats.services.MDBServiceImpl

parseDate(String, String, String) - Static method in class loci.common.DateTools

Parse the given date as a Joda instant

parseDateTime(byte[]) - Method in class ome.jxr.ifd.IFDMetadata

parseDeconvolutionLog(MetadataStore) - Method in class loci.formats.in.DeltavisionReader

Parse deconvolution output, if it exists.

parseDimension(String) - Method in class loci.formats.in.APLReader

Parse an integer from the given dimension String.

parseDimensionSizes(String[], String[]) - Method in class loci.formats.in.NikonTiffReader

parseDimensionTag(int) - Method in class loci.formats.in.LeicaReader

parseDOM(File) - Static method in class loci.common.xml.XMLTools

Parses a DOM from the given XML file on disk.

parseDOM(String) - Static method in class loci.common.xml.XMLTools

Parses a DOM from the given XML string.

parseDOM(InputStream) - Static method in class loci.common.xml.XMLTools

Parses a DOM from the given XML input stream.

parseDOM(Location) - Method in class loci.formats.in.PrairieReader

Parses a Document from the data in the given file.

parseDouble(String) - Method in class loci.formats.in.LeicaHandler

parseDouble(String) - Method in class loci.formats.in.LIFReader

parseDouble(String) - Method in class loci.formats.in.TiffReader

parseDouble(String) - Static method in class loci.formats.in.ZeissTIFFHandler

Parse a Double from a String.

parseEntryInto(IFDMetadata) - Method in class ome.jxr.parser.IFDParser

parseENV(Document) - Method in class loci.formats.in.PrairieMetadata

Parses metadata from Prairie ENV file.

parseETSFile(String, int) - Method in class loci.formats.in.CellSensReader

parseExperimentTag() - Method in class loci.formats.in.LeicaReader

parseExtraTags() - Method in class loci.formats.in.GatanDM2Reader

parseFDF(String) - Method in class loci.formats.in.VarianFDFReader

parseFile(String, MetamorphHandler) - Method in class loci.formats.in.MetamorphTiffReader

parseFile(DirectoryEntry) - Method in class loci.formats.services.POIServiceImpl

parseFile(File) - Method in class ome.specification.OmeValidator

Parses the specified file and returns the document.

parseFile(File, File) - Method in class ome.specification.OmeValidator

Parses the specified file and returns the document.

parseFileHeader(List<String>) - Method in class loci.formats.in.TextReader

Parses the file looking for the file header.

parseFilenames(int) - Method in class loci.formats.in.LeicaReader

parseFileWithStreamArray(File, StreamSource[]) - Method in class ome.specification.OmeValidator

Parses the specified file and returns the document.

parseFileWithStreamArrayToSdtErr(File, StreamSource[]) - Method in class ome.specification.OmeValidator

Parses the specified file and returns the document.

parseFilters(String) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Parse filters from the given word

parseFlexFile(int, int, int, int, boolean, MetadataStore) - Method in class loci.formats.in.FlexReader

Parses XML metadata from the Flex file corresponding to the given well.

parseFormulaRecord(FormulaRecord) - Method in class loci.poi.hssf.dev.FormulaViewer

Method parseFormulaRecord

parseHeader() - Method in class loci.formats.in.LiFlimReader

parseHeaderRow(String[]) - Method in class loci.formats.in.TextReader

Populates rowLength, xIndex, yIndex, and channels.

parseIdx(String, int) - Static method in class jj2000.j2k.ModuleSpec

This method is responsible of parsing tile indexes set and component indexes set for an option.

parseIFD(Node) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

parseIFDEntries() - Method in class ome.jxr.parser.IFDParser

parseImageHeader() - Method in class ome.jxr.parser.DatastreamParser

parseImageNames(int) - Method in class loci.formats.in.OpenlabReader

parseImageTag(int) - Method in class loci.formats.in.LeicaReader

parseINI(String) - Method in class loci.common.IniParser

Parses the INI-style configuration data from the given resource.

parseINI(String, Class<?>) - Method in class loci.common.IniParser

Parses the INI-style configuration data from the given resource, using the given class to find the resource.

parseINI(File) - Method in class loci.common.IniParser

Parses the INI-style wrapping the given file in a BufferedReader

parseINI(BufferedReader) - Method in class loci.common.IniParser

Parses the INI-style configuration data from the given input stream.

parseInstrumentData(MetadataStore, int) - Method in class loci.formats.in.LeicaReader

parseInt(String) - Static method in class loci.formats.in.BaseZeissReader

Parse an Integer from a String.

parseInt(String, int) - Static method in class loci.formats.in.BaseZeissReader

Parse an Integer from a String.

parseInt(String) - Method in class loci.formats.in.TiffReader

parseIntArray(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Parses the integer array expressed a string.

parseKeyAndValue(String, String, String) - Method in class loci.formats.in.ND2Handler

parseKeys(Element, PrairieMetadata.ValueTable) - Method in class loci.formats.in.PrairieMetadata

Parses <Key> elements beneath the given element, into the specified table.

parseKeyValue(String, String) - Method in class loci.formats.in.PerkinElmerReader

parseLength(String, String) - Method in class loci.formats.in.FakeReader

parseList(String) - Static method in class loci.plugins.prefs.StringOption

Parses a string of comma-separated values into a list of tokens.

parseLogFile(MetadataStore) - Method in class loci.formats.in.DeltavisionReader

Extract metadata from associated log file, if it exists.

parseLUT(int) - Method in class loci.formats.in.LeicaReader

parseMainTags(int, MetadataStore, ArrayList<BaseZeissReader.Tag>) - Method in class loci.formats.in.BaseZeissReader

parseMasks - Variable in class loci.formats.in.MIASReader

Whether or not mask pixel data should be parsed in setId.

parseMasks(MetadataStore) - Method in class loci.formats.in.MIASReader

Parse masks into a separate overlay-specific MetadataStore.

parseMasks(MetadataStore, int, int, String) - Method in class loci.formats.in.MIASReader

Parse Mask ROIs from the given TIFF and place them in the given MetadataStore.

parseMDB(String) - Method in class loci.formats.in.ZeissLSMReader

Parse a .mdb file and return a list of referenced .lsm files.

parseMetadata() - Method in class loci.formats.in.ZeissCZIReader.SubBlock

parseNotes(MetadataStore) - Method in class loci.formats.in.BioRadReader

parseObjectives(NodeList) - Method in class loci.formats.in.ZeissCZIReader

parseOption(String) - Method in class loci.plugins.prefs.BooleanOption

parseOption(String) - Method in class loci.plugins.prefs.DoubleOption

parseOption(String) - Method in class loci.plugins.prefs.Option

Parses the option's value from the given argument string.

parseOption(String) - Method in class loci.plugins.prefs.StringOption

parseOptions(String) - Method in class loci.plugins.in.Importer

Parses core options.

parseOptions(String) - Method in class loci.plugins.prefs.OptionsList

Parses option values from the given argument string.

parseOverlays(int, long, String, MetadataStore) - Method in class loci.formats.in.ZeissLSMReader

Parses overlay-related fields.

parsePageName() - Method in class loci.formats.in.FluoviewReader

parsePoints(String) - Static method in class loci.plugins.util.ROIHandler

Parse (x, y) coordinates from a String returned by MetadataRetrieve.getPolygonpoints(...) or MetadataRetrieve.getPolylinepoints(...)

parsePosition(int) - Method in class loci.formats.in.MicromanagerReader

parsePosition(String, int) - Method in class loci.formats.in.MicromanagerReader

parsePrairieMetadata() - Method in class loci.formats.in.PrairieReader

This step parses the Prairie metadata files into the Prairie-specific metadata structure, PrairieReader.meta.

parsePrimaryImagePlaneHeader() - Method in class ome.jxr.parser.DatastreamParser

parsePVStateShard(Element, PrairieMetadata.ValueTable) - Method in class loci.formats.in.PrairieMetadata

Parses the <PVStateShard> element beneath the given element, into the specified table.

parser - Variable in class loci.formats.in.APLReader

parser - Variable in class loci.formats.in.CellSensReader

parser - Variable in class loci.formats.in.FV1000Reader

parser - Variable in class loci.formats.in.ZeissCZIReader

Parser - Class in ome.jxr.parser

Base class for all parsers of a JPEG XR data stream.

Parser(Parser, RandomAccessInputStream) - Constructor for class ome.jxr.parser.Parser

parseRecord(IRandomAccess) - Static method in class loci.formats.in.IM3Reader

Parse an IM3 record at the current file pointer location

ParserErrorHandler - Class in loci.common.xml

Used by various XMLTools methods to handle XML parsing errors.

ParserErrorHandler() - Constructor for class loci.common.xml.ParserErrorHandler

parseResFile(String) - Method in class loci.formats.in.FlexReader

parseRKs(RecordInputStream) - Method in class loci.poi.hssf.record.MulRKRecord

parseROIFile(String, MetadataStore, int, int) - Method in class loci.formats.in.FV1000Reader

parseROIs(String, int, Vector) - Static method in class jj2000.j2k.roi.encoder.ROIScaler

This function parses the values given for the ROIs with the argument -Rroi.

parseROIs(MetadataStore) - Method in class loci.formats.in.BDReader

parseROIs(int) - Method in class loci.formats.in.CellH5Reader

parseROIs(MetadataStore) - Method in class loci.formats.in.TrestleReader

parseROIs(int, String, MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

Parse ROI data from the given RandomAccessInputStream and store it in the given MetadataStore.

parseROIString(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader

parseSeriesTag() - Method in class loci.formats.in.LeicaReader

parseSpectrumRecord(IRandomAccess, IM3Reader.ContainerRecord) - Method in class loci.formats.in.IM3Reader.Spectrum

Parse the spectrum record

parseString(IRandomAccess) - Static method in class loci.formats.in.IM3Reader

Parse a string from the IM3 file at the current file pointer loc

parseStructure() - Method in class loci.formats.in.CellH5Reader

parseTableData(List<String>, int) - Method in class loci.formats.in.TextReader

Reads the tabular data into the data array.

parseTags(int, String, String) - Method in class loci.formats.in.GatanReader

Parses Gatan DM3 tags.

parseTags(MetadataStore) - Method in class loci.formats.in.IPLabReader

parseTags(int, String, MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

Parse all of the tags in a stream.

parseTemplateFile(MetadataStore) - Method in class loci.formats.in.MIASReader

Parse metadata from the Nugenesistemplate.txt file.

parseText(String, int, boolean) - Method in class loci.formats.in.NativeND2Reader

parseTimestamp(String) - Method in class loci.formats.in.BaseZeissReader

Parse timestamp from string.

parseTimeTag(int) - Method in class loci.formats.in.LeicaReader

parseTimFile(String) - Method in class loci.formats.in.PerkinElmerReader

parseUIC1Tags(long, int) - Method in class loci.formats.in.MetamorphReader

UIC1 entry parser

parseUIC2Tags(long) - Method in class loci.formats.in.MetamorphReader

Populates metadata fields with some contained in MetaMorph UIC2 Tag.

parseUIC4Tags(long) - Method in class loci.formats.in.MetamorphReader

UIC4 metadata parser UIC4 Table contains per-plane blocks of metadata stage X/Y positions, camera chip offsets, stage labels...

parseURL(String) - Method in class loci.poi.hssf.util.RangeAddress

parseWellLogFile(int, MetadataStore) - Method in class loci.formats.in.CellWorxReader

Parse metadata from a well log file.

parseXFs(RecordInputStream) - Method in class loci.poi.hssf.record.MulBlankRecord

parseXML(String) - Static method in class loci.common.xml.XMLTools

Parses the given XML string into a list of key/value pairs.

parseXML(String, DefaultHandler) - Static method in class loci.common.xml.XMLTools

Parses the given XML string using the specified XML handler.

parseXML(RandomAccessInputStream, DefaultHandler) - Static method in class loci.common.xml.XMLTools

Parses the XML contained in the given input stream into using the specified XML handler.

parseXML(byte[], DefaultHandler) - Static method in class loci.common.xml.XMLTools

Parses the XML contained in the given byte array into using the specified XML handler.

parseXML(InputStream, DefaultHandler) - Static method in class loci.common.xml.XMLTools

Parses the XML contained in the given InputStream using the specified XML handler.

parseXML(Document) - Method in class loci.formats.in.PrairieMetadata

Parses metadata from Prairie XML file.

parseXMLFile() - Method in class loci.formats.in.MicromanagerReader

Parse metadata values from the Acqusition.xml file.

parseZpoFile(String) - Method in class loci.formats.in.PerkinElmerReader

parsingEnabled - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Enable the parsing mode or not when the decoding rate is specified .

parsingOffset - Variable in class ome.jxr.parser.Parser

partiallyRead() - Method in class loci.poi.poifs.storage.DocumentBlock

Was this a partially read block?

PASCAL - Static variable in class ome.units.UNITS

pass - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Black and white pass mode table.

PASS_HEIGHTS - Static variable in class loci.formats.in.APNGReader

PASS_WIDTHS - Static variable in class loci.formats.in.APNGReader

Interlacing pass dimensions.

passMode - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Pass mode table.

PassthroughCodec - Class in loci.formats.codec

A codec which just returns the exact data it was given, performing no compression or decompression.

PassthroughCodec() - Constructor for class loci.formats.codec.PassthroughCodec

password - Variable in class loci.poi.hssf.model.Sheet

PasswordRecord - Class in loci.poi.hssf.record

Title: Password Record

PasswordRecord() - Constructor for class loci.poi.hssf.record.PasswordRecord

PasswordRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PasswordRecord

Constructs a Password record and sets its fields appropriately.

PasswordRev4Record - Class in loci.poi.hssf.record

Title: Protection Revision 4 password Record

PasswordRev4Record() - Constructor for class loci.poi.hssf.record.PasswordRev4Record

PasswordRev4Record(RecordInputStream) - Constructor for class loci.poi.hssf.record.PasswordRev4Record

Constructs a PasswordRev4 (PROT4REVPASS) record and sets its fields appropriately.

path - Variable in class loci.formats.in.PerkinElmerReader.PixelsFile

path - Variable in class loci.plugins.config.ConfigWindow

path - Variable in class loci.plugins.config.LibraryEntry

path - Variable in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

path - Variable in class loci.poi.poifs.filesystem.DocumentDescriptor

path - Variable in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

path - Variable in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

path - Variable in class loci.poi.poifs.filesystem.POIFSWriterEvent

pathToImageData - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate

pathToPosition - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate

pathToSegmentationData - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate

patriarch - Variable in class loci.poi.hssf.record.EscherAggregate

patriarch - Variable in class loci.poi.hssf.usermodel.HSSFPicture

pattern - Variable in class loci.formats.FilePattern

The file pattern string.

pattern - Variable in class loci.formats.FileStitcher.ExternalSeries

PATTERN_D - Static variable in class loci.formats.in.CellomicsReader

PATTERN_O - Static variable in class loci.formats.in.CellomicsReader

patternIds - Variable in class loci.formats.FileStitcher

Whether string ids given should be treated as file patterns rather than single file paths.

patterns - Static variable in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

Every AcquisitionMode value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.ArcTypeEnumHandler

Every ArcType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.BinningEnumHandler

Every Binning value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.CompressionEnumHandler

Every Compression value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

Every ContrastMethod value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.CorrectionEnumHandler

Every Correction value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

Every DetectorType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

Every DimensionOrder value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

Every ExperimentType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

Every FilamentType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.FillRuleEnumHandler

Every FillRule value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.FilterTypeEnumHandler

Every FilterType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.FontFamilyEnumHandler

Every FontFamily value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.FontStyleEnumHandler

Every FontStyle value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

Every IlluminationType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.ImmersionEnumHandler

Every Immersion value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.LaserMediumEnumHandler

Every LaserMedium value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.LaserTypeEnumHandler

Every LaserType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.LineCapEnumHandler

Every LineCap value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.MarkerEnumHandler

Every Marker value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.MediumEnumHandler

Every Medium value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

Every MicrobeamManipulationType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

Every MicroscopeType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.NamingConventionEnumHandler

Every NamingConvention value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.PixelTypeEnumHandler

Every PixelType value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.PulseEnumHandler

Every Pulse value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

Every UnitsElectricPotential value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

Every UnitsFrequency value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

Every UnitsLength value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

Every UnitsPower value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

Every UnitsPressure value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

Every UnitsTemperature value must match one of these patterns.

patterns - Static variable in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

Every UnitsTime value must match one of these patterns.

PBM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

PBM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

PBM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

PBM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

PC - Static variable in class ome.units.UNITS

PCI_MAGIC_BYTES - Static variable in class loci.formats.in.PCIReader

PCIReader - Class in loci.formats.in

PCIReader is the file format reader for SimplePCI (Compix) .cxd files.

PCIReader() - Constructor for class loci.formats.in.PCIReader

Constructs a new SimplePCI reader.

PColor - Class in loci.poi.hssf.record

PColor - element in the list of colors - consider it a "struct"

PColor(byte, byte, byte) - Constructor for class loci.poi.hssf.record.PColor

PCORAWReader - Class in loci.formats.in

PCORAWReader is the file format reader for PCORAW files.

PCORAWReader() - Constructor for class loci.formats.in.PCORAWReader

Constructs a new PCORAW reader.

pcs - Variable in class jj2000.j2k.decoder.DecoderSpecs

The progression changes specifications

PCX_MAGIC_BYTE - Static variable in class loci.formats.in.PCXReader

PCXConstants - Interface in com.sun.media.imageioimpl.plugins.pcx

PCXImageReader - Class in com.sun.media.imageioimpl.plugins.pcx

PCXImageReader(PCXImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

PCXImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.pcx

PCXImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

PCXImageWriter - Class in com.sun.media.imageioimpl.plugins.pcx

PCXImageWriter(PCXImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

PCXImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.pcx

PCXImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

PCXMetadata - Class in com.sun.media.imageioimpl.plugins.pcx

PCXMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

PCXReader - Class in loci.formats.in

PCXReader is the file format reader for PCX files (originally used by PC Paintbrush; now used in Zeiss' LSM Image Browser).

PCXReader() - Constructor for class loci.formats.in.PCXReader

Constructs a new PCX reader.

PDS_MAGIC_STRING - Static variable in class loci.formats.in.PDSReader

PDSReader - Class in loci.formats.in

PDSReader is the file format reader for Perkin Elmer densitometer files.

PDSReader() - Constructor for class loci.formats.in.PDSReader

Constructs a new PDS reader.

peekExpressionToken() - Method in class loci.poi.hssf.record.FormulaRecord

peek at the token on the top of stack

PERCENT - Static variable in class loci.poi.hssf.record.formula.PercentPtg

PercentFraction - Class in ome.xml.model.primitives

A floating point value whose constraints are bound to Java's 32-bit floating point type and a further 0.0f minimum and 1.0f maximum.

PercentFraction(Float) - Constructor for class ome.xml.model.primitives.PercentFraction

PercentPtg - Class in loci.poi.hssf.record.formula

Percent PTG.

PercentPtg() - Constructor for class loci.poi.hssf.record.formula.PercentPtg

Creates new PercentPtg

PercentPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.PercentPtg

periodX - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

periodY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

PerkinElmerReader - Class in loci.formats.in

PerkinElmerReader is the file format reader for PerkinElmer files.

PerkinElmerReader() - Constructor for class loci.formats.in.PerkinElmerReader

Constructs a new PerkinElmer reader.

PerkinElmerReader.PixelsFile - Class in loci.formats.in

PerkinElmerReader.PixelsFile() - Constructor for class loci.formats.in.PerkinElmerReader.PixelsFile

perm - Variable in class loci.common.CBZip2InputStream.Data

PERSPECTIVE__OFFSETX - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__OFFSETY - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__ORIGINX - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__ORIGINY - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__PERSPECTIVEON - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__PERSPECTIVEX - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__PERSPECTIVEY - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__SCALEXTOX - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__SCALEXTOY - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__SCALEYTOX - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__SCALEYTOY - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__TYPE - Static variable in class loci.poi.ddf.EscherProperties

PERSPECTIVE__WEIGHT - Static variable in class loci.poi.ddf.EscherProperties

PETA(Unit<T>) - Static method in class ome.units.UNITS

PETAHZ - Static variable in class ome.units.UNITS

PETAM - Static variable in class ome.units.UNITS

PETAPA - Static variable in class ome.units.UNITS

PETAS - Static variable in class ome.units.UNITS

PETAV - Static variable in class ome.units.UNITS

PETAW - Static variable in class ome.units.UNITS

pf(Double, String) - Method in class loci.formats.in.PrairieReader

Converts the given double to a PositiveFloat, or null if incompatible.

PF_ABGR - Static variable in class org.libjpegturbo.turbojpeg.TJ

ABGR pixel format.

PF_ARGB - Static variable in class org.libjpegturbo.turbojpeg.TJ

ARGB pixel format.

PF_BGR - Static variable in class org.libjpegturbo.turbojpeg.TJ

BGR pixel format.

PF_BGRA - Static variable in class org.libjpegturbo.turbojpeg.TJ

BGRA pixel format.

PF_BGRX - Static variable in class org.libjpegturbo.turbojpeg.TJ

BGRX pixel format.

PF_GRAY - Static variable in class org.libjpegturbo.turbojpeg.TJ

Grayscale pixel format.

PF_RGB - Static variable in class org.libjpegturbo.turbojpeg.TJ

RGB pixel format.

PF_RGBA - Static variable in class org.libjpegturbo.turbojpeg.TJ

RGBA pixel format.

PF_RGBX - Static variable in class org.libjpegturbo.turbojpeg.TJ

RGBX pixel format.

PF_XBGR - Static variable in class org.libjpegturbo.turbojpeg.TJ

XBGR pixel format.

PF_XRGB - Static variable in class org.libjpegturbo.turbojpeg.TJ

XRGB pixel format.

pfsOffset - Variable in class loci.formats.in.NativeND2Reader

pfsStateOffset - Variable in class loci.formats.in.NativeND2Reader

pg_buf - Variable in class mdbtools.libmdb.MdbHandle

pg_reads - Variable in class mdbtools.libmdb.MdbStatistics

pg_size - Variable in class mdbtools.libmdb.MdbFormatConstants

PGM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

PGM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

PGM_MAGIC_CHAR - Static variable in class loci.formats.in.PGMReader

PGM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

PGM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

PGMReader - Class in loci.formats.in

PGMReader is the file format reader for Portable Gray Map (PGM) images.

PGMReader() - Constructor for class loci.formats.in.PGMReader

Constructs a new PGMReader.

PHASE - Static variable in class loci.formats.FormatTools

Identifies the Phase dimensional type, representing a dimension consisting of phases.

phaseLabels - Variable in class loci.formats.in.ZeissCZIReader

phases - Variable in class loci.formats.in.LiFlimReader

phases - Variable in class loci.formats.in.ZeissCZIReader

PHOTOBLEACHING - Static variable in class loci.formats.in.CellSensReader

PhotoInterp - Enum in loci.formats.tiff

Utility class for working with TIFF photometric interpretations.

PhotoInterp(int, String, String) - Constructor for enum loci.formats.tiff.PhotoInterp

Default constructor.

PHOTOMETRIC_INTERPRETATION - Static variable in class loci.formats.in.DicomReader

PHOTOMETRIC_INTERPRETATION - Static variable in class loci.formats.tiff.IFD

PHOTOMETRIC_INTERPRETATION_BLACK_IS_ZERO - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PhotometricInterpretation" tag.

PHOTOMETRIC_INTERPRETATION_CIELAB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PhotometricInterpretation" tag.

PHOTOMETRIC_INTERPRETATION_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PhotometricInterpretation" tag.

PHOTOMETRIC_INTERPRETATION_ICCLAB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PhotometricInterpretation" tag.

PHOTOMETRIC_INTERPRETATION_PALETTE_COLOR - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PhotometricInterpretation" tag.

PHOTOMETRIC_INTERPRETATION_RGB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PhotometricInterpretation" tag.

PHOTOMETRIC_INTERPRETATION_TRANSPARENCY_MASK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PhotometricInterpretation" tag.

PHOTOMETRIC_INTERPRETATION_WHITE_IS_ZERO - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PhotometricInterpretation" tag.

PHOTOMETRIC_INTERPRETATION_Y_CB_CR - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PhotometricInterpretation" tag.

photometricInterpretation - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the PhotometricInterpretation tag.

photometricInterpretation - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

photometricInterpretation - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

photometricInterpretation - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

PHOTON_IMAGING_MODE - Static variable in class loci.formats.in.CellSensReader

photosensorReading - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Photosensor reading.

PhotoshopTiffReader - Class in loci.formats.in

PhotoshopTiffReader is the file format reader for Adobe Photoshop TIFF files.

PhotoshopTiffReader() - Constructor for class loci.formats.in.PhotoshopTiffReader

Constructs a new Photoshop TIFF reader.

PHYSICAL_SIZE_TAG - Static variable in class loci.formats.in.SlidebookTiffReader

PHYSICAL_SIZE_X - Static variable in class loci.tests.testng.Configuration

PHYSICAL_SIZE_X_UNIT - Static variable in class loci.tests.testng.Configuration

PHYSICAL_SIZE_Y - Static variable in class loci.tests.testng.Configuration

PHYSICAL_SIZE_Y_UNIT - Static variable in class loci.tests.testng.Configuration

PHYSICAL_SIZE_Z - Static variable in class loci.tests.testng.Configuration

PHYSICAL_SIZE_Z_UNIT - Static variable in class loci.tests.testng.Configuration

physicalSizes - Variable in class loci.formats.in.LeicaReader

physicalSizeX - Variable in class loci.formats.in.BaseZeissReader

physicalSizeX - Variable in class loci.formats.in.BioRadSCNReader

physicalSizeX - Variable in class loci.formats.in.CellSensReader.Pyramid

physicalSizeX - Variable in class loci.formats.in.FakeReader

physicalSizeX - Variable in class loci.formats.in.LeicaHandler

physicalSizeX - Variable in class loci.formats.in.NikonTiffReader

physicalSizeX - Variable in class loci.formats.in.SISReader

physicalSizeX - Variable in class ome.xml.model.Pixels

physicalSizeXs - Variable in class loci.formats.in.LIFReader

physicalSizeY - Variable in class loci.formats.in.BaseZeissReader

physicalSizeY - Variable in class loci.formats.in.BioRadSCNReader

physicalSizeY - Variable in class loci.formats.in.CellSensReader.Pyramid

physicalSizeY - Variable in class loci.formats.in.FakeReader

physicalSizeY - Variable in class loci.formats.in.LeicaHandler

physicalSizeY - Variable in class loci.formats.in.NikonTiffReader

physicalSizeY - Variable in class loci.formats.in.SISReader

physicalSizeY - Variable in class ome.xml.model.Pixels

physicalSizeYs - Variable in class loci.formats.in.LIFReader

physicalSizeZ - Variable in class loci.formats.in.BaseZeissReader

physicalSizeZ - Variable in class loci.formats.in.FakeReader

physicalSizeZ - Variable in class loci.formats.in.NikonTiffReader

physicalSizeZ - Variable in class loci.formats.in.TiffReader

physicalSizeZ - Variable in class ome.xml.model.Pixels

physicalX - Variable in class loci.formats.in.VolocityReader.Stack

physicalY - Variable in class loci.formats.in.VolocityReader.Stack

physicalZ - Variable in class loci.formats.in.VolocityReader.Stack

PHZ - Static variable in class ome.units.UNITS

PIC_FILE_ID - Static variable in class loci.formats.in.BioRadReader

Numerical ID of a valid Bio-Rad PIC file.

PIC_SUFFIX - Static variable in class loci.formats.in.BioRadReader

picFiles - Variable in class loci.formats.in.BioRadReader

PICO(Unit<T>) - Static method in class ome.units.UNITS

pict - Variable in class loci.formats.in.OpenlabReader

Helper reader to read PICT data.

pict - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

PICT_9A - Static variable in class loci.formats.in.PictReader

PICT_BITSRECT - Static variable in class loci.formats.in.PictReader

PICT_BITSRGN - Static variable in class loci.formats.in.PictReader

PICT_CLIP_RGN - Static variable in class loci.formats.in.PictReader

PICT_END - Static variable in class loci.formats.in.PictReader

PICT_JPEG - Static variable in class loci.formats.in.PictReader

PICT_LONGCOMMENT - Static variable in class loci.formats.in.PictReader

PICT_PACKBITSRECT - Static variable in class loci.formats.in.PictReader

PICT_PACKBITSRGN - Static variable in class loci.formats.in.PictReader

PICT_TYPE_1 - Static variable in class loci.formats.in.PictReader

PICT_TYPE_2 - Static variable in class loci.formats.in.PictReader

PictReader - Class in loci.formats.in

PictReader is the file format reader for Apple PICT files.

PictReader() - Constructor for class loci.formats.in.PictReader

Constructs a new PICT reader.

pictToImage(byte[]) - Method in class loci.formats.gui.LegacyQTTools

Converts the given byte array in PICT format to a Java image.

PICTURE_TYPE_DIB - Static variable in class loci.poi.hssf.usermodel.HSSFPicture

PICTURE_TYPE_DIB - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Device independant bitmap

PICTURE_TYPE_EMF - Static variable in class loci.poi.hssf.usermodel.HSSFPicture

PICTURE_TYPE_EMF - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Extended windows meta file

PICTURE_TYPE_JPEG - Static variable in class loci.poi.hssf.usermodel.HSSFPicture

PICTURE_TYPE_JPEG - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

JPEG format

PICTURE_TYPE_PICT - Static variable in class loci.poi.hssf.usermodel.HSSFPicture

PICTURE_TYPE_PICT - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Mac PICT format

PICTURE_TYPE_PNG - Static variable in class loci.poi.hssf.usermodel.HSSFPicture

PICTURE_TYPE_PNG - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

PNG format

PICTURE_TYPE_WMF - Static variable in class loci.poi.hssf.usermodel.HSSFPicture

PICTURE_TYPE_WMF - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Windows Meta File

pictureIndex - Variable in class loci.poi.hssf.usermodel.HSSFPicture

PictureShape - Class in loci.poi.hssf.model

Represents a picture shape and creates all specific low level records.

PictureShape(HSSFSimpleShape, int) - Constructor for class loci.poi.hssf.model.PictureShape

Creates the line shape from the highlevel user shape.

PictWidgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats PICT support.

PictWidgets() - Constructor for class loci.plugins.config.PictWidgets

PID_APPNAME - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the application that created the document

PID_AUTHOR - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's author

PID_BYTECOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Number of bytes.

PID_CATEGORY - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

The entry is a string denoting the category the file belongs to, e.g.

PID_CHARCOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the number of characters in the document

PID_CODEPAGE - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

The entry denotes a code page.

PID_COMMENTS - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's comments

PID_COMPANY - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

This entry contains the company name.

PID_CREATE_DTM - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the date and time the document was created.

PID_DICTIONARY - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

The entry is a dictionary.

PID_DOCPARTS - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

This entry contains the names of document parts (word: names of the documents in the master document, excel: sheet names, power point: slide titles, binder: document names).

PID_EDITTIME - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's edit time

PID_HEADINGPAIR - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

This entry denotes an internally used property.

PID_HIDDENCOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Number of hidden slides.

PID_KEYWORDS - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's keywords

PID_LASTAUTHOR - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's last author

PID_LASTPRINTED - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the date and time the document was last printed

PID_LASTSAVE_DTM - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the date and time the document was saved

PID_LINECOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Number of lines.

PID_LINKSDIRTY - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

If this entry is -1 the links are dirty and should be re-evaluated.

PID_MANAGER - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

This entry contains the name of the project manager.

PID_MAX - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

The highest well-known property ID.

PID_MMCLIPCOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Number of multimedia clips, e.g.

PID_NOTECOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Number of slides with notes.

PID_PAGECOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the number of pages in the document

PID_PARCOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Number of paragraphs.

PID_PRESFORMAT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Target format for power point presentation, e.g.

PID_REVNUMBER - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's revision number

PID_SCALE - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

This entry is set to -1 when scaling of the thumbnail is desired.

PID_SECURITY - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes whether read/write access to the document is allowed or whether is should be opened as read-only.

PID_SLIDECOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Number of slides in a power point presentation.

PID_SUBJECT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's subject

PID_TEMPLATE - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's template

PID_THUMBNAIL - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's thumbnail

PID_TITLE - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the document's title

PID_WORDCOUNT - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

ID of the property that denotes the number of words in the document

pinfo - Static variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The list of parameters that is accepted by the bit stream readers.

pinfo - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The list of parameters that is accepted for quantization.

pinfo - Static variable in class jj2000.j2k.codestream.writer.PktEncoder

The list of parameters that is accepted for packet encoding.

pinfo - Static variable in class jj2000.j2k.entropy.decoder.EntropyDecoder

The list of parameters that is accepted by the entropy decoders.

pinfo - Static variable in class jj2000.j2k.entropy.encoder.EntropyCoder

The list of parameters that is accepted for entropy coding.

pinfo - Static variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

The list of parameters that is accepted for entropy coding.

pinfo - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

The list of parameters that is accepted by the forward component transformation module.

pinfo - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

The list of parameters that is accepted by the inverse component transformation module.

pinfo - Static variable in class jj2000.j2k.quantization.dequantizer.Dequantizer

The list of parameters that is accepted by the bit stream readers.

pinfo - Static variable in class jj2000.j2k.quantization.quantizer.Quantizer

The list of parameters that is accepted for quantization.

pinfo - Static variable in class jj2000.j2k.roi.encoder.ROIScaler

The list of parameters that are accepted for ROI coding.

pinfo - Static variable in class jj2000.j2k.roi.ROIDeScaler

The list of parameters that is accepted by the entropy decoders.

pinfo - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilter

The list of parameters that is accepted for wavelet filters.

pinfo - Static variable in class jj2000.j2k.wavelet.analysis.ForwardWT

The list of parameters that is accepted for wavelet transform.

pinhole - Variable in class loci.formats.in.ImarisHDFReader

pinhole - Variable in class loci.formats.in.LeicaHandler

pinhole - Variable in class loci.formats.in.LeicaReader

pinhole - Variable in class loci.formats.in.ZeissCZIReader.Channel

pinhole - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

pinholes - Variable in class loci.formats.in.LIFReader

pinholeSize - Variable in class loci.formats.in.FV1000Reader

pinholeSize - Variable in class loci.formats.in.ND2Handler

pinholeSize - Variable in class loci.formats.in.NikonTiffReader

pinholeSize - Variable in class ome.xml.model.Channel

pix - Variable in class loci.formats.in.CanonRawReader

pixbuf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

pixClk - Variable in class loci.formats.in.SDTInfo

PIXEL - Static variable in class ome.units.UNITS

PIXEL_CLOCK - Static variable in class loci.formats.in.CellSensReader

PIXEL_DATA - Static variable in class loci.formats.in.DicomReader

PIXEL_FORMAT_SIZE - Static variable in class ome.jxr.constants.IFD

PIXEL_INFO_TYPE - Static variable in class loci.formats.in.CellSensReader

PIXEL_OFFSET - Static variable in class loci.formats.in.BioRadGelReader

PIXEL_OFFSET - Static variable in class loci.formats.in.VGSAMReader

PIXEL_REPRESENTATION - Static variable in class loci.formats.in.DicomReader

PIXEL_SIGN - Static variable in class loci.formats.in.DicomReader

PIXEL_SPACING - Static variable in class loci.formats.in.DicomReader

PIXEL_TYPE - Static variable in class loci.tests.testng.Configuration

PIXEL_TYPE - Static variable in class loci.tests.testng.Jpeg2000GrindTest

PIXEL_TYPE - Static variable in class ome.specification.XMLMockObjects

The default pixels type.

PIXEL_X_DIMENSION - Static variable in class loci.formats.tiff.IFD

PIXEL_Y_DIMENSION - Static variable in class loci.formats.tiff.IFD

pixelAspectRatio - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

pixelBits - Variable in class loci.formats.gui.Index16ColorModel

pixelBits - Variable in class loci.formats.gui.SignedColorModel

pixelBits - Variable in class loci.formats.gui.UnsignedIntColorModel

pixelBytes - Variable in class loci.formats.in.NativeQTReader

Total number of bytes of pixel data.

pixelData - Variable in class loci.formats.in.MINCReader

pixelDataNum - Variable in class loci.formats.in.GatanReader

pixelFile - Variable in class loci.formats.in.AnalyzeReader

File containing the pixel data.

pixelFile - Variable in class loci.formats.in.NiftiReader

File containing the pixel data.

PixelFormat - Enum in ome.jxr.ifd

Enumeration of available pixel format entries.

PixelFormat(int, int, PixelType, OutputColorFormat) - Constructor for enum ome.jxr.ifd.PixelFormat

PixelFormat(int, int, boolean, PixelType, OutputColorFormat) - Constructor for enum ome.jxr.ifd.PixelFormat

pixelLengths - Variable in class loci.formats.in.SlidebookReader

pixelOffset - Variable in class loci.formats.in.AIMReader

pixelOffset - Variable in class loci.formats.in.AnalyzeReader

Offset to the pixel data in the .img file.

pixelOffset - Variable in class loci.formats.in.FitsReader

pixelOffset - Variable in class loci.formats.in.GatanReader

Offset to pixel data.

pixelOffset - Variable in class loci.formats.in.HISReader

Offsets to pixel data for each series.

pixelOffset - Variable in class loci.formats.in.JEOLReader

pixelOffset - Variable in class loci.formats.in.KodakReader

pixelOffset - Variable in class loci.formats.in.MolecularImagingReader

pixelOffset - Variable in class loci.formats.in.NativeQTReader

Offset to start of pixel data.

pixelOffset - Variable in class loci.formats.in.NiftiReader

Offset to the pixel data in the .img file.

pixelOffset - Variable in class loci.formats.in.RHKReader

pixelOffset - Variable in class loci.formats.in.SIFReader

pixelOffset - Variable in class loci.formats.in.TopometrixReader

pixelOffset - Variable in class loci.formats.in.VolocityClippingReader

pixelOffset - Variable in class loci.formats.out.ICSWriter

pixelOffset - Variable in class loci.formats.out.V3DrawWriter

pixelOffsets - Variable in class loci.formats.in.JPXReader

pixelOffsets - Variable in class loci.formats.in.SlidebookReader

pixelOffsets - Variable in class loci.formats.in.VarianFDFReader

pixelOffsets - Variable in class loci.formats.in.VisitechReader

pixelPtr - Variable in class loci.formats.codec.RPZACodec

pixels - Variable in class loci.formats.in.AFIReader

pixels - Variable in class loci.formats.in.GIFReader

pixels - Variable in class loci.formats.in.ImagicReader

pixels - Variable in class loci.formats.in.LeicaSCNReader.Image

pixels - Variable in class loci.formats.in.ZeissCZIReader

pixels - Variable in class loci.formats.out.ICSWriter

pixels - Variable in class loci.formats.out.V3DrawWriter

pixels - Variable in class ome.xml.model.BinData

pixels - Variable in class ome.xml.model.Channel

pixels - Variable in class ome.xml.model.Image

Pixels - Class in ome.xml.model

Pixels() - Constructor for class ome.xml.model.Pixels

Default constructor.

Pixels(Element, OMEModel) - Constructor for class ome.xml.model.Pixels

Constructs Pixels recursively from an XML DOM tree.

Pixels(Pixels) - Constructor for class ome.xml.model.Pixels

Copy constructor.

pixels - Variable in class ome.xml.model.Plane

pixels - Variable in class ome.xml.model.TiffData

pixels2 - Variable in class loci.formats.out.LegacyQTWriter

PIXELS_MARKER - Static variable in class loci.formats.in.VisitechReader

PIXELS_OFFSET - Static variable in class loci.formats.in.ARFReader

PIXELS_OFFSET - Static variable in class loci.formats.in.LIMReader

PIXELS_STRING - Static variable in class loci.formats.in.KodakReader

PIXELS_SUFFIXES - Static variable in class loci.formats.in.InCellReader

PIXELS_TAG - Static variable in class loci.formats.in.ImaconReader

PIXELS_TAG - Static variable in class ome.specification.XMLWriter

Identifies the Pixels tag.

PIXELS_TYPE_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the PixelType attribute.

pixelsDone - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

pixelsFile - Variable in class loci.formats.in.FujiReader

pixelsFile - Variable in class loci.formats.in.ImagicReader

pixelsFile - Variable in class loci.formats.in.PDSReader

pixelsFilename - Variable in class loci.formats.in.AnalyzeReader

pixelsFilename - Variable in class loci.formats.in.NiftiReader

pixelsFiles - Variable in class loci.formats.in.BrukerReader

pixelsFiles - Variable in class loci.formats.in.TillVisionReader

pixelsFiles - Variable in class loci.formats.in.VolocityReader.Stack

pixelSize - Variable in class loci.formats.in.FV1000Reader

pixelSize - Variable in class loci.formats.in.IPLabReader

pixelSize - Variable in class loci.formats.in.MicromanagerReader.Position

pixelSize - Variable in class loci.formats.in.ScanrReader

pixelSize - Variable in class loci.formats.in.SVSReader

pixelSize - Static variable in class org.libjpegturbo.turbojpeg.TJ

pixelSizes - Variable in class loci.formats.in.GatanReader

List of pixel sizes.

pixelSizes - Variable in class loci.formats.in.NRRDReader

pixelSizeT - Variable in class loci.formats.in.FV1000Reader

pixelSizeT - Variable in class loci.formats.in.ImprovisionTiffReader

pixelSizeUnits - Variable in class loci.formats.in.GatanDM2Reader

pixelSizeX - Variable in class loci.formats.in.CellH5Reader

pixelSizeX - Variable in class loci.formats.in.DicomReader

pixelSizeX - Variable in class loci.formats.in.FV1000Reader

pixelSizeX - Variable in class loci.formats.in.GatanDM2Reader

pixelSizeX - Variable in class loci.formats.in.ImarisHDFReader

pixelSizeX - Variable in class loci.formats.in.ImprovisionTiffReader

pixelSizeX - Variable in class loci.formats.in.MetamorphHandler

pixelSizeX - Variable in class loci.formats.in.ND2Handler

pixelSizeX - Variable in class loci.formats.in.PerkinElmerReader

pixelSizeX - Variable in class loci.formats.in.VarianFDFReader

pixelSizeX - Variable in class loci.formats.in.ZeissLSMReader

pixelSizeY - Variable in class loci.formats.in.CellH5Reader

pixelSizeY - Variable in class loci.formats.in.DicomReader

pixelSizeY - Variable in class loci.formats.in.FV1000Reader

pixelSizeY - Variable in class loci.formats.in.GatanDM2Reader

pixelSizeY - Variable in class loci.formats.in.ImarisHDFReader

pixelSizeY - Variable in class loci.formats.in.ImprovisionTiffReader

pixelSizeY - Variable in class loci.formats.in.MetamorphHandler

pixelSizeY - Variable in class loci.formats.in.ND2Handler

pixelSizeY - Variable in class loci.formats.in.PerkinElmerReader

pixelSizeY - Variable in class loci.formats.in.VarianFDFReader

pixelSizeY - Variable in class loci.formats.in.ZeissLSMReader

pixelSizeZ - Variable in class loci.formats.in.CellH5Reader

pixelSizeZ - Variable in class loci.formats.in.DicomReader

pixelSizeZ - Variable in class loci.formats.in.FV1000Reader

pixelSizeZ - Variable in class loci.formats.in.ImarisHDFReader

pixelSizeZ - Variable in class loci.formats.in.ImprovisionTiffReader

pixelSizeZ - Variable in class loci.formats.in.ND2Handler

pixelSizeZ - Variable in class loci.formats.in.VarianFDFReader

pixelSizeZ - Variable in class loci.formats.in.ZeissLSMReader

pixelsOffset - Variable in class loci.formats.in.BioRadSCNReader

pixelsOffset - Variable in class loci.formats.in.BurleighReader

pixelsOffset - Variable in class loci.formats.in.InCell3000Reader

pixelsOffset - Variable in class loci.formats.in.JPEG2000Reader

pixelsOffset - Variable in class loci.formats.in.QuesantReader

pixelsOffsets - Variable in class loci.formats.in.ImspectorReader

List of offsets to each block of pixel data.

pixelsPerPlane - Variable in class loci.formats.in.AmiraReader.ASCII

pixelsRead - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

pixelsStream - Variable in class loci.formats.in.TillVisionReader

pixelStack - Variable in class loci.formats.in.GIFReader

pixelsToRead - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

pixelType - Variable in class loci.formats.CoreMetadata

Describes the number of bytes per pixel.

pixelType - Variable in class loci.formats.in.AmiraReader.ASCII

pixelType - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

pixelType - Variable in class loci.formats.services.WlzServiceImpl

pixelType - Variable in class loci.tests.testng.ConversionTest.Plane

pixelType - Variable in enum ome.jxr.ifd.PixelFormat

PixelType - Enum in ome.jxr.ifd

Possible data types for pixels in an image.

PixelType(String, int) - Constructor for enum ome.jxr.ifd.PixelType

PixelType - Enum in ome.xml.model.enums

PixelType(String) - Constructor for enum ome.xml.model.enums.PixelType

PixelTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for PixelType.

PixelTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.PixelTypeEnumHandler

pixelTypeFromBytes(int, boolean, boolean) - Static method in class loci.formats.FormatTools

Returns an appropriate pixel type given the number of bytes per pixel.

pixelTypeFromString(String) - Static method in class loci.formats.FormatTools

Takes a string value and maps it to one of the pixel type enumerations.

pixelTypes - Static variable in class loci.formats.FormatTools

Human readable pixel type.

pixTime - Variable in class loci.formats.in.SDTInfo

pkdPktHeaders - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The packed packet headers if the PPM or PPT markers are used

pktDec - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reference to the PktDecoder instance

PktDecoder - Class in jj2000.j2k.codestream.reader

This class is used to read packet's head and body.

PktDecoder(DecoderSpecs, HeaderDecoder, RandomAccessIO, BitstreamReaderAgent, boolean, int) - Constructor for class jj2000.j2k.codestream.reader.PktDecoder

Creates an empty PktDecoder object associated with given decoder specifications and HeaderDecoder.

pktEnc - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Packet encoder.

PktEncoder - Class in jj2000.j2k.codestream.writer

This class builds packets and keeps the state information of packet interdependencies.

PktEncoder(CodedCBlkDataSrcEnc, J2KImageWriteParamJava, Point[][][]) - Constructor for class jj2000.j2k.codestream.writer.PktEncoder

Creates a new packet header encoder, using the information from the 'infoSrc' object.

PktHeaderBitReader - Class in jj2000.j2k.codestream.reader

This class provides a bit based reading facility from a byte based one, applying the bit unstuffing procedure as required by the packet headers.

PktHeaderBitReader(RandomAccessIO) - Constructor for class jj2000.j2k.codestream.reader.PktHeaderBitReader

Instantiates a 'PktHeaderBitReader' that gets the byte data from the given source.

PktHeaderBitReader(ByteArrayInputStream) - Constructor for class jj2000.j2k.codestream.reader.PktHeaderBitReader

Instantiates a 'PktHeaderBitReader' that gets the byte data from the given source.

pktHL - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Length of each packet head found in the tile

pktIdx - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Index of the packet where each layer has been found

pktIdx - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Index of the current packet in the tile.

PktInfo - Class in jj2000.j2k.codestream.reader

This class defines an object used to countain informations about a packet to which the current code-block belongs.

PktInfo(int, int) - Constructor for class jj2000.j2k.codestream.reader.PktInfo

Classe's constructor.

placeWindow(Window) - Static method in class loci.plugins.util.WindowTools

Places the given window at a nice location on screen, either centered below the ImageJ window if there is one, or else centered on screen.

planar - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

true if the image is encoded using separate planes.

PLANAR_CONFIGURATION - Static variable in class loci.formats.in.DicomReader

PLANAR_CONFIGURATION - Static variable in class loci.formats.tiff.IFD

PLANAR_CONFIGURATION_CHUNKY - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PlanarConfiguration" tag.

PLANAR_CONFIGURATION_PLANAR - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "PlanarConfiguration" tag.

planarCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

planarConfiguration - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

plane - Variable in class loci.formats.in.CanonRawReader

plane - Variable in class loci.formats.in.ZeissCZIReader.Coordinate

PLANE - Static variable in class ome.specification.XMLWriter

A default plane.

Plane - Class in ome.xml.model

Plane() - Constructor for class ome.xml.model.Plane

Default constructor.

Plane(Element, OMEModel) - Constructor for class ome.xml.model.Plane

Constructs Plane recursively from an XML DOM tree.

Plane(Plane) - Constructor for class ome.xml.model.Plane

Copy constructor.

PLANE_ORIGIN_RWC - Static variable in class loci.formats.in.CellSensReader

PLANE_SCALE_RWC - Static variable in class loci.formats.in.CellSensReader

PLANE_UNIT - Static variable in class loci.formats.in.CellSensReader

planeCount() - Method in class loci.formats.out.OMETiffWriter

planeCount - Variable in class ome.xml.model.TiffData

planeDeltaT - Variable in class loci.formats.in.FlexReader

planeExposureTime - Variable in class loci.formats.in.FlexReader

planeIndex - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

planeIndexes - Variable in class loci.plugins.util.BFVirtualStack

planeLinks - Variable in class ome.xml.model.Annotation

planeMax - Variable in class loci.formats.MinMaxCalculator

Max values for each plane.

planeMin - Variable in class loci.formats.MinMaxCalculator

Min values for each plane.

planeName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

planeNames - Variable in class loci.formats.in.ZeissTIFFHandler

planeOffset - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

planeOffset - Variable in class loci.formats.in.SlidebookReader

planeOffset - Variable in class loci.formats.out.EPSWriter

planeOffsets - Variable in class loci.formats.in.OpenlabReader

planePadding - Variable in class loci.formats.in.VolocityReader.Stack

planePositionX - Variable in class loci.formats.in.FlexReader

planePositionY - Variable in class loci.formats.in.FlexReader

planePositionZ - Variable in class loci.formats.in.FlexReader

planeReader - Variable in class loci.formats.in.AmiraReader

planes - Variable in class loci.formats.in.FV1000Reader

planes - Variable in class loci.formats.in.OpenlabReader

planes - Variable in class loci.formats.in.OperettaReader.OperettaHandler

planes - Variable in class loci.formats.in.OperettaReader

planes - Variable in class loci.formats.in.ZeissCZIReader

planes - Variable in class loci.formats.in.ZeissTIFFHandler

planes - Variable in class loci.formats.in.ZeissTIFFReader

Image planes

planes - Variable in class ome.xml.model.Pixels

planeSize - Variable in class loci.formats.in.AmiraReader.HxRLE

planeSize - Variable in class loci.formats.in.AmiraReader.HxZip

planeSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

planesPerBlock - Variable in class loci.formats.in.ImspectorReader

Number of planes in each block of pixel data.

planesWritten - Variable in class loci.formats.out.AVIWriter

PLATE - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

plate - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate

plate - Variable in class loci.formats.in.MIASReader.AnalysisFile

PLATE - Static variable in class loci.formats.ResourceNamer

Plate - Class in ome.xml.model

Plate() - Constructor for class ome.xml.model.Plate

Default constructor.

Plate(Element, OMEModel) - Constructor for class ome.xml.model.Plate

Constructs Plate recursively from an XML DOM tree.

Plate(Plate) - Constructor for class ome.xml.model.Plate

Copy constructor.

plate - Variable in class ome.xml.model.PlateAcquisition

plate - Variable in class ome.xml.model.Well

plateAcqStartTime - Variable in class loci.formats.in.FlexReader

PlateAcquisition - Class in ome.xml.model

PlateAcquisition() - Constructor for class ome.xml.model.PlateAcquisition

Default constructor.

PlateAcquisition(Element, OMEModel) - Constructor for class ome.xml.model.PlateAcquisition

Constructs PlateAcquisition recursively from an XML DOM tree.

PlateAcquisition(PlateAcquisition) - Constructor for class ome.xml.model.PlateAcquisition

Copy constructor.

plateAcquisitionLinks - Variable in class ome.xml.model.Annotation

plateAcquisitions - Variable in class ome.xml.model.Plate

plateAcquisitions - Variable in class ome.xml.model.WellSample

plateBarcode - Variable in class loci.formats.in.FlexReader

plateCols - Variable in class loci.formats.in.OperettaReader.OperettaHandler

plateCount - Variable in class loci.formats.in.FlexReader

plateDescription - Variable in class loci.formats.in.BDReader

plateDescription - Variable in class loci.formats.in.OperettaReader.OperettaHandler

plateID - Variable in class loci.formats.in.OperettaReader.OperettaHandler

plateLinks - Variable in class ome.xml.model.Annotation

plateLinks - Variable in class ome.xml.model.Screen

plateLogFile - Variable in class loci.formats.in.CellWorxReader

plateMap - Variable in class loci.formats.in.InCellReader

plateMaps - Variable in class loci.formats.in.ScreenReader

plateMetadataFiles - Variable in class loci.formats.in.ScreenReader

plateName - Variable in class loci.formats.in.BDReader

plateName - Variable in class loci.formats.in.FlexReader

plateName - Variable in class loci.formats.in.OperettaReader.OperettaHandler

plateName - Variable in class loci.formats.in.ScanrReader

PlateRef - Class in ome.xml.model

PlateRef() - Constructor for class ome.xml.model.PlateRef

Default constructor.

PlateRef(Element, OMEModel) - Constructor for class ome.xml.model.PlateRef

Constructs PlateRef recursively from an XML DOM tree.

PlateRef(PlateRef) - Constructor for class ome.xml.model.PlateRef

Copy constructor.

plateRows - Variable in class loci.formats.in.OperettaReader.OperettaHandler

plates - Variable in class ome.xml.model.OME

PLM - Static variable in interface jj2000.j2k.codestream.Markers

Packet length, main header (PLM): 0xFF57

PLM_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for PLM marker segment found

PlotAreaRecord - Class in loci.poi.hssf.record

preceeds and identifies a frame as belonging to the plot area.

PlotAreaRecord() - Constructor for class loci.poi.hssf.record.PlotAreaRecord

PlotAreaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PlotAreaRecord

Constructs a PlotArea record and sets its fields appropriately.

PlotGrowthRecord - Class in loci.poi.hssf.record

The plot growth record specifies the scaling factors used when a font is scaled.

PlotGrowthRecord() - Constructor for class loci.poi.hssf.record.PlotGrowthRecord

PlotGrowthRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PlotGrowthRecord

Constructs a PlotGrowth record and sets its fields appropriately.

plotVisibleOnly - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

PLT - Static variable in interface jj2000.j2k.codestream.Markers

Packet length, tile-part header (PLT): 0xFF58

PLT_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for PLT marker segment found

plugin - Variable in class loci.plugins.in.Importer

A handle to the plugin wrapper, for toggling the canceled and success flags.

plugin - Variable in class loci.plugins.out.Exporter

plugins - Static variable in class loci.plugins.shortcut.ShortcutPanel

Details for installed plugins.

PM - Static variable in class ome.units.UNITS

PN - Static variable in class loci.formats.in.DicomReader

PNG - Static variable in class loci.formats.in.CellSensReader

PNG_SIG - Static variable in class loci.formats.out.APNGWriter

PNMImageReader - Class in com.sun.media.imageioimpl.plugins.pnm

This class is the Java Image IO plugin reader for PNM images.

PNMImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Constructs PNMImageReader from the provided ImageReaderSpi.

PNMImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.pnm

PNMImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

PNMImageWriteParam - Class in com.sun.media.imageio.plugins.pnm

A subclass of ImageWriteParam for writing images in the PNM format.

PNMImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam

Constructs a PNMImageWriteParam object with default values for parameters.

PNMImageWriter - Class in com.sun.media.imageioimpl.plugins.pnm

The Java Image IO plugin writer for encoding a binary RenderedImage into a PNM format.

PNMImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

Constructs PNMImageWriter based on the provided ImageWriterSpi.

PNMImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.pnm

PNMImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

PNMMetadata - Class in com.sun.media.imageioimpl.plugins.pnm

Metadata for the PNM plug-in.

PNMMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

Constructor containing code shared by other constructors.

PNMMetadata(IIOMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

PNMMetadata(ImageTypeSpecifier, ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

Constructs a default image PNMMetadata object appropriate for the given image type and write parameters.

PNMMetadataFormat - Class in com.sun.media.imageioimpl.plugins.pnm

PNMMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

Constructs PNMMetadataFormat.

PNMMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.pnm

PNMMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources

poc - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the POC marker segments found in main and first tile-part header.

POC - Static variable in interface jj2000.j2k.codestream.Markers

POC_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for POC marker segment found

pockelCell - Variable in class ome.xml.model.Laser

pockelCellSetting - Variable in class ome.xml.model.Channel

poi - Variable in class loci.formats.in.FV1000Reader

poi - Variable in class loci.formats.in.IPWReader

Helper reader - parses embedded files from the OLE document.

poi - Variable in class loci.formats.in.PCIReader

poi - Variable in class loci.formats.in.ZeissZVIReader

POIDocument - Class in loci.poi

This holds the common functionality for all POI Document classes.

POIDocument() - Constructor for class loci.poi.POIDocument

poifs - Variable in class loci.poi.hssf.usermodel.HSSFObjectData

Reference to the filesystem, required for retrieving the object data.

POIFSConstants - Interface in loci.poi.poifs.common

A repository for constants shared by POI classes.

POIFSDocument - Class in loci.poi.poifs.filesystem

This class manages a document in the POIFS filesystem.

POIFSDocument(String, RawDataBlock[], int) - Constructor for class loci.poi.poifs.filesystem.POIFSDocument

Constructor from large blocks

POIFSDocument(String, SmallDocumentBlock[], int) - Constructor for class loci.poi.poifs.filesystem.POIFSDocument

Constructor from small blocks

POIFSDocument(String, ListManagedBlock[], int, int) - Constructor for class loci.poi.poifs.filesystem.POIFSDocument

Constructor from small blocks

POIFSDocument(String, RandomAccessInputStream, int) - Constructor for class loci.poi.poifs.filesystem.POIFSDocument

Constructor

POIFSDocument(String, int, POIFSDocumentPath, POIFSWriterListener, int) - Constructor for class loci.poi.poifs.filesystem.POIFSDocument

Constructor

POIFSDocument.BigBlockStore - Class in loci.poi.poifs.filesystem

POIFSDocument.BigBlockStore(Object[]) - Constructor for class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

Constructor

POIFSDocument.BigBlockStore(POIFSDocumentPath, String, int, POIFSWriterListener) - Constructor for class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

Constructor for a big block store that will be written later

POIFSDocument.SmallBlockStore - Class in loci.poi.poifs.filesystem

POIFSDocument.SmallBlockStore(Object[]) - Constructor for class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

Constructor

POIFSDocument.SmallBlockStore(POIFSDocumentPath, String, int, POIFSWriterListener) - Constructor for class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

Constructor for a small block store that will be written later

POIFSDocumentPath - Class in loci.poi.poifs.filesystem

Class POIFSDocumentPath

POIFSDocumentPath(String[]) - Constructor for class loci.poi.poifs.filesystem.POIFSDocumentPath

constructor for the path of a document that is not in the root of the POIFSFileSystem

POIFSDocumentPath() - Constructor for class loci.poi.poifs.filesystem.POIFSDocumentPath

simple constructor for the path of a document that is in the root of the POIFSFileSystem.

POIFSDocumentPath(POIFSDocumentPath, String[]) - Constructor for class loci.poi.poifs.filesystem.POIFSDocumentPath

constructor that adds additional subdirectories to an existing path

POIFSFileSystem - Class in loci.poi.poifs.filesystem

This is the main class of the POIFS system; it manages the entire life cycle of the filesystem.

POIFSFileSystem() - Constructor for class loci.poi.poifs.filesystem.POIFSFileSystem

Constructor, intended for writing

POIFSFileSystem(RandomAccessInputStream, int) - Constructor for class loci.poi.poifs.filesystem.POIFSFileSystem

Create a POIFSFileSystem from an InputStream

POIFSReader - Class in loci.poi.poifs.eventfilesystem

An event-driven reader for POIFS file systems.

POIFSReader() - Constructor for class loci.poi.poifs.eventfilesystem.POIFSReader

Create a POIFSReader

POIFSReader.SampleListener - Class in loci.poi.poifs.eventfilesystem

POIFSReader.SampleListener() - Constructor for class loci.poi.poifs.eventfilesystem.POIFSReader.SampleListener

Constructor SampleListener

POIFSReaderEvent - Class in loci.poi.poifs.eventfilesystem

Class POIFSReaderEvent

POIFSReaderEvent(DocumentInputStream, POIFSDocumentPath, String) - Constructor for class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

package scoped constructor

POIFSReaderListener - Interface in loci.poi.poifs.eventfilesystem

Interface POIFSReaderListener

POIFSReaderRegistry - Class in loci.poi.poifs.eventfilesystem

A registry for POIFSReaderListeners and the DocumentDescriptors of the documents those listeners are interested in

POIFSReaderRegistry() - Constructor for class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

Construct the registry

POIFSViewable - Interface in loci.poi.poifs.dev

Interface for a drill-down viewable object.

POIFSViewEngine - Class in loci.poi.poifs.dev

This class contains methods used to inspect POIFSViewable objects

POIFSViewEngine() - Constructor for class loci.poi.poifs.dev.POIFSViewEngine

POIFSViewer - Class in loci.poi.poifs.dev

A simple viewer for POIFS files

POIFSViewer() - Constructor for class loci.poi.poifs.dev.POIFSViewer

POIFSWriterEvent - Class in loci.poi.poifs.filesystem

Class POIFSWriterEvent

POIFSWriterEvent(DocumentOutputStream, POIFSDocumentPath, String, int) - Constructor for class loci.poi.poifs.filesystem.POIFSWriterEvent

package scoped constructor

POIFSWriterListener - Interface in loci.poi.poifs.filesystem

Interface POIFSWriterListener

POILogFactory - Class in loci.poi.util

Provides logging without clients having to mess with configuration/initialization.

POILogFactory() - Constructor for class loci.poi.util.POILogFactory

construct a POILogFactory.

POILogger - Class in loci.poi.util

A logger interface that strives to make it as easy as possible for developers to write log calls, while simultaneously making those calls as cheap as possible by performing lazy evaluation of the log message.

POILogger() - Constructor for class loci.poi.util.POILogger

package scope so it cannot be instantiated outside of the util package.

POINT - Static variable in class loci.formats.in.FV1000Reader

ROI types.

Point - Class in ome.xml.model

Point() - Constructor for class ome.xml.model.Point

Default constructor.

Point(Element, OMEModel) - Constructor for class ome.xml.model.Point

Constructs Point recursively from an XML DOM tree.

Point(Point) - Constructor for class ome.xml.model.Point

Copy constructor.

pointCount - Variable in class loci.formats.in.BaseZeissReader.Shape

pointer - Variable in class loci.poi.hssf.model.FormulaParser

points - Variable in enum loci.formats.in.BaseZeissReader.FeatureType

points - Variable in class loci.formats.in.BaseZeissReader.Shape

points - Variable in class loci.formats.in.IMODReader

points - Variable in class loci.formats.in.LiFlimReader.ROI

POINTS - Static variable in class ome.specification.XMLMockObjects

Points used to create Polyline and Polygon shape.

points - Variable in class ome.xml.model.Polygon

points - Variable in class ome.xml.model.Polyline

pointsToString() - Method in class loci.formats.in.LiFlimReader.ROI

pointStyle - Variable in class loci.formats.in.BaseZeissReader.Shape

POIService - Interface in loci.formats.services

Interface defining methods for reading Microsoft OLE2 documents using OME's fork of Apache POI.

POIServiceImpl - Class in loci.formats.services

POIServiceImpl() - Constructor for class loci.formats.services.POIServiceImpl

Default constructor.

POITextExtractor - Class in loci.poi

Common Parent for Text Extractors of POI Documents.

POITextExtractor(POIDocument) - Constructor for class loci.poi.POITextExtractor

Creates a new text extractor for the given document

polarityF - Variable in class loci.formats.in.SDTInfo

polarityL - Variable in class loci.formats.in.SDTInfo

2 = disabled line markers.

polarityP - Variable in class loci.formats.in.SDTInfo

POLARIZATION - Static variable in class loci.formats.FormatTools

Identifies the Polarization dimensional type, representing a dimension consisting of polarization states.

POLYGON - Static variable in class loci.formats.in.FV1000Reader

POLYGON - Static variable in class loci.formats.in.LeicaHandler.ROI

POLYGON - Static variable in class loci.formats.in.LIFReader.ROI

Polygon - Class in ome.xml.model

Polygon() - Constructor for class ome.xml.model.Polygon

Default constructor.

Polygon(Element, OMEModel) - Constructor for class ome.xml.model.Polygon

Constructs Polygon recursively from an XML DOM tree.

Polygon(Polygon) - Constructor for class ome.xml.model.Polygon

Copy constructor.

PolygonShape - Class in loci.poi.hssf.model

PolygonShape(HSSFPolygon, int) - Constructor for class loci.poi.hssf.model.PolygonShape

Creates the low evel records for an polygon.

POLYLINE - Static variable in class loci.formats.in.FV1000Reader

Polyline - Class in ome.xml.model

Polyline() - Constructor for class ome.xml.model.Polyline

Default constructor.

Polyline(Element, OMEModel) - Constructor for class ome.xml.model.Polyline

Constructs Polyline recursively from an XML DOM tree.

Polyline(Polyline) - Constructor for class ome.xml.model.Polyline

Copy constructor.

POLYLINE_ARROW - Static variable in class loci.formats.in.ZeissLSMReader

pool - Variable in class loci.tests.testng.Jpeg2000GrindTest

Thread pool executor service.

poolName - Variable in class jj2000.j2k.util.ThreadPool

The name of the pool

poolPriority - Variable in class jj2000.j2k.util.ThreadPool

The priority for the pool

popExpressionToken() - Method in class loci.poi.hssf.record.FormulaRecord

pop a token off of the stack

populateCircles(NodeList, int, int) - Method in class loci.formats.in.ZeissCZIReader

populateCore - Variable in class loci.formats.in.FlexReader.FlexHandler

populateCoreMetadata(int, int, int, List<String>) - Method in class loci.formats.in.FlexReader

Populate core metadata using the given list of image names.

populateCoreMetadata() - Method in class loci.formats.in.PrairieReader

This step populates the CoreMetadata by extracting relevant values from the parsed PrairieReader.meta structure.

populateCoreMetadata(int, int, int, int, int) - Method in class loci.formats.in.TextReader

Populates the CoreMetadata values.

populateExtendedMetadata() - Method in class loci.formats.in.NiftiReader

populateImage(OMEXMLMetadata, int) - Method in class loci.formats.out.OMETiffWriter

populateINI(IFormatReader) - Method in class loci.tests.testng.Configuration

populateInstrument() - Method in class ome.specification.XMLMockObjects

Creates and populates the instrument.

populateLength() - Method in class loci.common.ZipHandle

populateLines(NodeList, int, int) - Method in class loci.formats.in.ZeissCZIReader

populateMaskPixels(int, int, int, MetadataStore) - Method in class loci.formats.in.MIASReader

Populate the MaskPixels.BinData attribute for the Mask identified by the given Image index, ROI index, and Shape index.

populateMetadata() - Method in class loci.formats.in.MicromanagerReader

populateMetadata(MetadataStore, int, String, CoreMetadata) - Static method in class loci.formats.MetadataTools

Populates the given MetadataStore, for the specified series, using the values from the provided CoreMetadata.

populateMetadata(MetadataStore, int, String, boolean, String, String, int, int, int, int, int, int) - Static method in class loci.formats.MetadataTools

Populates the given MetadataStore, for the specified series, using the provided values.

populateMetadata(MetadataStore, String, int, String, boolean, String, String, int, int, int, int, int, int) - Static method in class loci.formats.MetadataTools

Populates the given MetadataStore, for the specified series, using the provided values.

populateMetadataStore(MetadataStore) - Method in class loci.formats.in.FlexReader

populateMetadataStore(MetadataStore, String) - Method in class loci.formats.in.FV1000Reader

populateMetadataStore(String[]) - Method in class loci.formats.in.MicromanagerReader

populateMetadataStore(ND2Handler) - Method in class loci.formats.in.NativeND2Reader

populateMetadataStore() - Method in class loci.formats.in.TillVisionReader

populateMetadataStore(ZeissLSMReader.SubBlock, MetadataStore, int) - Method in class loci.formats.in.ZeissLSMReader

populateMetadataStoreImageJ(MetadataStore) - Method in class loci.formats.in.TiffReader

Checks the original metadata table for ImageJ-specific information to propagate into the metadata store.

populateObjective(MetadataStore, int) - Method in class loci.formats.in.DeltavisionReader

Populate an Objective based upon the lens ID.

populateOMEMetadata(IniTable, MetadataStore) - Method in class loci.formats.in.HitachiReader

populateOMEMetadata() - Method in class loci.formats.in.PrairieReader

This step populates the OME MetadataStore by extracting relevant values from the parsed PrairieReader.meta structure.

populateOriginalMetadata(Element, Deque<String>) - Method in class loci.formats.in.LIFReader

populateOriginalMetadata() - Method in class loci.formats.in.PrairieReader

This steps populates the original metadata table (the tables returned by FormatReader.getGlobalMetadata() and FormatReader.getSeriesMetadata()).

populateOriginalMetadata(Element, Deque<String>) - Method in class loci.formats.in.ZeissCZIReader

populateOriginalMetadata(OMEXMLMetadata, Hashtable<String, Object>) - Method in interface loci.formats.services.OMEXMLService

Adds the key/value pairs in the specified Hashtable as new OriginalMetadata annotations in the given OME-XML metadata object.

populateOriginalMetadata(OMEXMLMetadata, String, String) - Method in interface loci.formats.services.OMEXMLService

Adds the specified key/value pair as a new OriginalMetadata node to the given OME-XML metadata object.

populateOriginalMetadata(OMEXMLMetadata, Hashtable<String, Object>) - Method in class loci.formats.services.OMEXMLServiceImpl

populateOriginalMetadata(OMEXMLMetadata, String, String) - Method in class loci.formats.services.OMEXMLServiceImpl

populatePixels(MetadataStore, IFormatReader) - Static method in class loci.formats.MetadataTools

Populates the Pixels element of the given metadata store, using core metadata from the given reader.

populatePixels(MetadataStore, IFormatReader, boolean) - Static method in class loci.formats.MetadataTools

Populates the Pixels element of the given metadata store, using core metadata from the given reader.

populatePixels(MetadataStore, IFormatReader, boolean, boolean) - Static method in class loci.formats.MetadataTools

Populates the Pixels element of the given metadata store, using core metadata from the given reader.

populatePixelsOnly(MetadataStore, IFormatReader) - Static method in class loci.formats.MetadataTools

populatePixelsOnly(MetadataStore, int, boolean, String, String, int, int, int, int, int, int) - Static method in class loci.formats.MetadataTools

populatePixelType(int) - Method in class loci.formats.in.NiftiReader

populatePolylines(NodeList, int, int, boolean) - Method in class loci.formats.in.ZeissCZIReader

populatePropertyTree(DirectoryProperty) - Method in class loci.poi.poifs.property.PropertyTable

populateRectangles(NodeList, int, int) - Method in class loci.formats.in.ZeissCZIReader

populateROI(List<String>, String[], int, int, int, int, MetadataStore) - Method in class loci.formats.in.MIASReader

populateROIs(MetadataStore) - Method in class loci.formats.in.ND2Handler

populateSPW(MetadataStore, int, int, int, int, int, int) - Method in class loci.formats.in.FakeReader

populateTiffData(OMEXMLMetadata, int[], int, int, int) - Method in class loci.formats.out.OMETiffWriter

populateXY - Variable in class loci.formats.in.ND2Handler

pos - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

pos - Variable in class jj2000.j2k.decoder.DecoderSpecs

Progression order specifications

pos - Variable in class jj2000.j2k.entropy.decoder.ByteInputBuffer

The index of the next character to read from the input stream buffer

pos - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

The current position in the byte-buffer

pos - Variable in class jj2000.j2k.util.ISRandomAccessIO

pos(int) - Method in class loci.formats.cache.CacheStrategy

Shortcut for converting rasterized position to N-D position.

pos(int, int[]) - Method in class loci.formats.cache.CacheStrategy

Shortcut for converting rasterized position to N-D position, using the given array instead of allocating a new one.

pos - Variable in class loci.formats.in.AVIReader

pos - Variable in class loci.poi.hssf.record.RecordInputStream

POS_COMP_RES_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType

The bit stream is Position/Component/Resolution/Layer progressive : 3

position - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The position of the first sample of this image in the stream.

position - Variable in class loci.common.NIOFileHandle

The absolute position within the file.

position - Variable in class loci.formats.in.OBFReader.Stack

position - Variable in class mdbtools.examples.MemoryRandomAccess

POSITION_CHANGED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating an updated current dimensional position.

positionCount - Variable in class loci.formats.in.NativeND2Reader

positions - Variable in class jj2000.j2k.util.CodestreamManipulator

The positions of the SOT, SOP and EPH markers

positions - Variable in class loci.formats.cache.CacheStrategy

The list of dimensional positions to consider caching, in order of preference based on strategy, axis priority and planar ordering.

positions - Variable in class loci.formats.in.MicromanagerReader

positions - Variable in class loci.formats.in.ZeissCZIReader

positionsMatch(int, int) - Method in class loci.formats.in.PrairieReader

Verifies that stage coordinates match for all (P, Z) across time.

positionsX - Variable in class loci.formats.in.ZeissCZIReader

positionsY - Variable in class loci.formats.in.ZeissCZIReader

positionsZ - Variable in class loci.formats.in.ZeissCZIReader

positionToRaster(int[], int[]) - Static method in class loci.formats.FormatTools

Computes a unique 1-D index corresponding to the given multidimensional position.

positionX - Variable in class loci.formats.in.FV1000Reader.PlaneData

positionX - Variable in class loci.formats.in.MetamorphHandler

positionX - Variable in class loci.formats.in.OperettaReader.Plane

positionX - Variable in class ome.xml.model.Plane

positionX - Variable in class ome.xml.model.WellSample

positionY - Variable in class loci.formats.in.FV1000Reader.PlaneData

positionY - Variable in class loci.formats.in.MetamorphHandler

positionY - Variable in class loci.formats.in.OperettaReader.Plane

positionY - Variable in class ome.xml.model.Plane

positionY - Variable in class ome.xml.model.WellSample

positionZ - Variable in class loci.formats.in.FV1000Reader.PlaneData

positionZ - Variable in class loci.formats.in.OperettaReader.Plane

positionZ - Variable in class ome.xml.model.Plane

PositiveFloat - Class in ome.xml.model.primitives

A float whose constraints are bound to Java's 64-bit float (double) and a further positive restriction.

PositiveFloat(Double) - Constructor for class ome.xml.model.primitives.PositiveFloat

PositiveInteger - Class in ome.xml.model.primitives

An integer whose constraints are bound to Java's 32-bit signed integer type and a further positive restriction.

PositiveInteger(Integer) - Constructor for class ome.xml.model.primitives.PositiveInteger

PositiveLong - Class in ome.xml.model.primitives

An integer whose constraints are bound to Java's 64-bit signed integer type and a further positive restriction.

PositiveLong(Long) - Constructor for class ome.xml.model.primitives.PositiveLong

posNames - Variable in class loci.formats.in.ND2Handler

possibleValues - Variable in class loci.plugins.prefs.StringOption

List of possible values.

post - Variable in class loci.formats.NumberFilter

String appearing after the numerical block.

PostCompRateAllocator - Class in jj2000.j2k.entropy.encoder

This is the abstract class from which post-compression rate allocators which generate layers should inherit.

PostCompRateAllocator(CodedCBlkDataSrcEnc, int, CodestreamWriter, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Initializes the source of entropy coded data.

posX - Variable in class loci.formats.in.GatanReader

posX - Variable in class loci.formats.in.InCellReader

posX - Variable in class loci.formats.in.LIFReader

posX - Variable in class loci.formats.in.NativeND2Reader

posX - Variable in class loci.formats.in.ND2Handler

posY - Variable in class loci.formats.in.GatanReader

posY - Variable in class loci.formats.in.InCellReader

posY - Variable in class loci.formats.in.LIFReader

posY - Variable in class loci.formats.in.NativeND2Reader

posY - Variable in class loci.formats.in.ND2Handler

posZ - Variable in class loci.formats.in.GatanReader

posZ - Variable in class loci.formats.in.LIFReader

posZ - Variable in class loci.formats.in.NativeND2Reader

posZ - Variable in class loci.formats.in.ND2Handler

PovrayReader - Class in loci.formats.in

PovrayReader is the file format reader for POV-Ray .df3 files.

PovrayReader() - Constructor for class loci.formats.in.PovrayReader

Constructs a new POV-Ray reader.

power - Variable in class loci.formats.in.ND2Handler

power - Variable in class loci.formats.in.ZeissLSMReader.Laser

Power() - Method in class loci.poi.hssf.model.FormulaParser

Power - Class in ome.units.quantity

A wrapper for the Power class from the units implementation.

Power(Number, Unit<Power>) - Constructor for class ome.units.quantity.Power

power - Variable in class ome.xml.model.LightSource

power1 - Static variable in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

The exponent for gamma correction.

power1 - Static variable in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

The exponent for gamma correction.

PowerPtg - Class in loci.poi.hssf.record.formula

PowerPtg() - Constructor for class loci.poi.hssf.record.formula.PowerPtg

Creates new AddPtg

PowerPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.PowerPtg

PPA - Static variable in class ome.units.UNITS

pph - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Flag indicating whether packed packet header was used for this tile

pphbais - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The packed packet header if it was used

pphs - Variable in class jj2000.j2k.decoder.DecoderSpecs

Packed packet header specifications

ppinfo - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Array containing the coordinates, width, height, indexes, ...

ppinfo - Variable in class jj2000.j2k.codestream.writer.PktEncoder

Array containing the coordinates, width, height, indexes, ...

PPM - Static variable in interface jj2000.j2k.codestream.Markers

Packed packet headers, main header (PPM): 0xFF60

PPM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

PPM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

PPM_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for SOD marker segment found

PPM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

PPM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

pPMMarkerData - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Array containing the Nppm and Ippm fields of the PPM marker segments

ppmUsed - Variable in class jj2000.j2k.util.CodestreamManipulator

Flag indicating whether packed packet headers in main header is used

ppoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

PPT - Static variable in interface jj2000.j2k.codestream.Markers

Packed packet headers, tile-part header (PPT): 0xFF61

ppt - Variable in class jj2000.j2k.util.CodestreamManipulator

The number of packets per tile

PPT_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for SOD marker segment found

pptp - Variable in class jj2000.j2k.util.CodestreamManipulator

The number of packets per tile-part

pptUsed - Variable in class jj2000.j2k.util.CodestreamManipulator

Flag indicating whether packed packet headers in tile headers is used

PQBinReader - Class in loci.formats.in

PQBinReader is the file format reader for PicoQuant .bin files.

PQBinReader() - Constructor for class loci.formats.in.PQBinReader

Constructs a new PQBin reader.

PRAIRIE_SUFFIXES - Static variable in class loci.formats.in.PrairieReader

PRAIRIE_TAG_1 - Static variable in class loci.formats.in.PrairieReader

PRAIRIE_TAG_2 - Static variable in class loci.formats.in.PrairieReader

PRAIRIE_TAG_3 - Static variable in class loci.formats.in.PrairieReader

PrairieMetadata - Class in loci.formats.in

Metadata structure for Prairie Technologies' TIFF-based format.

PrairieMetadata(Document, Document, Document) - Constructor for class loci.formats.in.PrairieMetadata

Creates a new Prairie metadata by parsing the given XML, CFG and/or ENV documents.

PrairieMetadata.Frame - Class in loci.formats.in

A Prairie <Frame>, beneath a <Sequence>.

PrairieMetadata.Frame(PrairieMetadata.Sequence, Element) - Constructor for class loci.formats.in.PrairieMetadata.Frame

Creates a new frame by parsing the given <Frame> element.

PrairieMetadata.PFile - Class in loci.formats.in

A Prairie <File> beneath a <Frame>.

PrairieMetadata.PFile(PrairieMetadata.Frame, Element) - Constructor for class loci.formats.in.PrairieMetadata.PFile

Creates a new file by parsing the given <File> element.

PrairieMetadata.Sequence - Class in loci.formats.in

A Prairie <Sequence>.

PrairieMetadata.Sequence(Element) - Constructor for class loci.formats.in.PrairieMetadata.Sequence

Creates a new sequence by parsing the given <Sequence> element.

PrairieMetadata.Value - Interface in loci.formats.in

A value in a Prairie metadata dictionary.

PrairieMetadata.ValueItem - Class in loci.formats.in

A leaf value with an actual PrairieMetadata.ValueItem.value() as well as an optional PrairieMetadata.ValueItem.description().

PrairieMetadata.ValueItem(String, String) - Constructor for class loci.formats.in.PrairieMetadata.ValueItem

PrairieMetadata.ValueTable - Class in loci.formats.in

A table of values.

PrairieMetadata.ValueTable() - Constructor for class loci.formats.in.PrairieMetadata.ValueTable

PrairieReader - Class in loci.formats.in

PrairieReader is the file format reader for Prairie Technologies' TIFF variant.

PrairieReader() - Constructor for class loci.formats.in.PrairieReader

Constructs a new Prairie TIFF reader.

pre - Variable in class loci.formats.NumberFilter

String appearing before the numerical block.

PRE_AMP_SETTING - Static variable in class loci.formats.in.FluoviewReader

PREAMP_GAIN_VALUE - Static variable in class loci.formats.in.CellSensReader

PrecCoordInfo - Class in jj2000.j2k.codestream

This class is used to store the coordinates of precincts.

PrecCoordInfo(int, int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.PrecCoordInfo

Constructor.

PrecCoordInfo() - Constructor for class jj2000.j2k.codestream.PrecCoordInfo

Empty Constructor.

precedence - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

PRECINCT_PARTITION_DEF_SIZE - Static variable in interface jj2000.j2k.codestream.Markers

The default size exponent of the precincts

precinctPartition - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies precinct partition dimensions for tiles/components.

precinctPartition - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

boolean used to signal if the precinct partition is used for each component and each tile.

precinctPartitionIsUsed - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Is the precinct partition used

precinctPartitionUsed() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the boolean used to know if the precinct partition is used

precinctPartitionUsed(int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns true if the precinct partition is used for the specified component and tile, returns false otherwise

precinctPartitionUsed(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns true if precinct partition is used for the specified component and tile, returns false otherwise.

PrecinctSizeSpec - Class in jj2000.j2k.entropy

This class extends ModuleSpec class for precinct partition sizes holding purposes.

PrecinctSizeSpec(int, int, byte, IntegerSpec) - Constructor for class jj2000.j2k.entropy.PrecinctSizeSpec

Creates a new PrecinctSizeSpec object for the specified number of tiles and components.

PrecinctSizeSpec(int, int, byte, BlkImgDataSrc, IntegerSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.PrecinctSizeSpec

Creates a new PrecinctSizeSpec object for the specified number of tiles and components and the J2KImageWriteParamJava instance.

PrecInfo - Class in jj2000.j2k.codestream

Class that holds precinct coordinates and references to contained code-blocks in each subband.

PrecInfo(int, int, int, int, int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.PrecInfo

Class constructor.

PrecisionRecord - Class in loci.poi.hssf.record

Title: Precision Record

PrecisionRecord() - Constructor for class loci.poi.hssf.record.PrecisionRecord

PrecisionRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PrecisionRecord

Constructs a Precision record and sets its fields appropriately.

preDefinedColorSpaces - Static variable in class com.sun.media.imageio.stream.RawImageInputStream

preDefinedTypes - Static variable in class com.sun.media.imageio.stream.RawImageInputStream

PREDICTED_CLASS_LABELS - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor

predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater

predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor

predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

PREDICTOR - Static variable in class loci.formats.tiff.IFD

PREDICTOR_HORIZONTAL_DIFFERENCING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Predictor" tag.

PREDICTOR_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Predictor" tag.

PREF_ND2_NIKON - Static variable in class loci.plugins.util.LociPrefs

PREF_PICT_QTJAVA - Static variable in class loci.plugins.util.LociPrefs

PREF_QT_QTJAVA - Static variable in class loci.plugins.util.LociPrefs

PREF_READER_ENABLED - Static variable in class loci.plugins.util.LociPrefs

PREF_READER_WINDOWLESS - Static variable in class loci.plugins.util.LociPrefs

PREF_SDT_INTENSITY - Static variable in class loci.plugins.util.LociPrefs

PREF_TIFF_IMAGEIO - Static variable in class loci.plugins.util.LociPrefs

preferArray() - Method in interface loci.poi.poifs.dev.POIFSViewable

Give viewers a hint as to whether to call getViewableArray or getViewableIterator

preferArray() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Give viewers a hint as to whether to call getViewableArray or getViewableIterator

preferArray() - Method in class loci.poi.poifs.filesystem.DocumentNode

Give viewers a hint as to whether to call getViewableArray or getViewableIterator

preferArray() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Give viewers a hint as to whether to call getViewableArray or getViewableIterator

preferArray() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Give viewers a hint as to whether to call getViewableArray or getViewableIterator

preferArray() - Method in class loci.poi.poifs.property.Property

Give viewers a hint as to whether to call getViewableArray or getViewableIterator

prefix - Variable in class loci.formats.in.GIFReader

prefix - Variable in class loci.formats.in.ND2Handler

PREFIX - Static variable in class loci.formats.in.TCSReader

prefix - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo

prefix_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

the prefix code which represents the predecessor string to current input point

PREFIX_PATH - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

prefixSymbol(String) - Method in class ome.units.unit.Unit

preLoad - Variable in class loci.formats.in.PQBinReader

Whether to pre-load all lifetime bins for faster loading.

preLoad - Variable in class loci.formats.in.SDTReader

Whether to pre-load all lifetime bins for faster loading.

premultipliedAlphaFlag - Variable in class ome.jxr.parser.DatastreamParser

preoffset - Variable in class loci.poi.hssf.model.Sheet

prepareGZipStream(int) - Method in class loci.formats.in.LiFlimReader

prepareInsertEmpty(int, ImageTypeSpecifier, int, int, IIOMetadata, List, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

prepareRead(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

prepareReplacePixels(int, Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

prepareToWriteImage(int, byte[], IFD, int, int, int, int) - Method in class loci.formats.out.TiffWriter

Performs the preparation for work prior to the usage of the TIFF saver.

prepareWriteEmpty(IIOMetadata, ImageTypeSpecifier, int, int, IIOMetadata, List, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

prepareWriteSequence(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

prepareWriteSequence(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

preprocess(RandomAccessInputStream) - Method in class loci.formats.codec.JPEGTileDecoder

Pre-process the stream to make sure that the image width and height are non-zero.

preprops - Variable in class loci.poi.hpsf.MutableSection

List to assemble the properties.

PRESCANS - Static variable in class loci.formats.in.FluoviewReader

PRESENT - Static variable in class loci.plugins.config.LibraryEntry

HTML markup for installed library.

preSerialize() - Method in class loci.poi.hssf.model.Sheet

Perform any work necessary before the sheet is about to be serialized.

preserveNodes - Variable in class loci.poi.hssf.usermodel.HSSFWorkbook

holds whether or not to preserve other nodes in the POIFS.

Pressure - Class in ome.units.quantity

A wrapper for the Pressure class from the units implementation.

Pressure(Number, Unit<Pressure>) - Constructor for class ome.units.quantity.Pressure

prestitched - Variable in class loci.formats.in.ZeissCZIReader

prevBuf - Variable in class loci.formats.in.ZeissLSMReader

prevChangingElems - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

prevChannel - Variable in class loci.formats.in.ZeissLSMReader

prevElement - Variable in class loci.formats.in.ND2Handler

previewNames - Variable in class loci.formats.in.FV1000Reader

PreviewPane - Class in loci.formats.gui

PreviewPane is a panel for use as a JFileChooser accessory, displaying a thumbnail for the selected image, loaded in a separate thread.

PreviewPane(JFileChooser) - Constructor for class loci.formats.gui.PreviewPane

Constructs a preview pane for the given file chooser.

prevImage - Variable in class loci.formats.in.ICSReader

previousChannel - Variable in class loci.formats.in.ZeissCZIReader

previousImage - Variable in class loci.formats.codec.CodecOptions

Pixels for preceding image (READ/WRITE).

previousTag - Variable in class loci.formats.in.CellSensReader

prevPixels - Variable in class loci.formats.in.NativeQTReader

Pixel data for the previous image plane.

prevPlane - Variable in class loci.formats.in.NativeQTReader

Previous plane number.

prevPlane - Variable in class loci.formats.in.ZeissLSMReader

prevRegion - Variable in class loci.formats.in.ZeissLSMReader

prevRuntype - Variable in class loci.formats.in.ND2Handler

prevtIdxs - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The last encoded truncation point for each code-block.

preWrite() - Method in class loci.poi.poifs.property.DirectoryProperty

Perform whatever activities need to be performed prior to writing

preWrite() - Method in class loci.poi.poifs.property.DocumentProperty

Perform whatever activities need to be performed prior to writing

preWrite() - Method in class loci.poi.poifs.property.Property

Perform whatever activities need to be performed prior to writing

preWrite() - Method in class loci.poi.poifs.property.PropertyTable

Prepare to be written

PRIMARY_CHROMATICITIES - Static variable in class loci.formats.tiff.IFD

primaryFileGUID - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

PrimitiveNumber - Interface in ome.xml.model.primitives

A primitive type from an XSD definition with a given set of constraints.

PrimitiveType<T> - Class in ome.xml.model.primitives

A primitive type from an XSD definition with a given set of constraints.

PrimitiveType(T) - Constructor for class ome.xml.model.primitives.PrimitiveType

Default constructor.

PrimitiveType() - Constructor for class ome.xml.model.primitives.PrimitiveType

Default constructor.

print(PrintWriter, int, int, String) - Method in class jj2000.j2k.util.MsgPrinter

Formats the message to print in the current line width, by breaking the message into lines between words.

print(int, long, String) - Method in class loci.formats.in.NativeQTReader

Debugging method; prints information on an atom.

printable - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

printArray(String, int[]) - Static method in class loci.formats.tools.CacheConsole

Helper utility for outputing contents of an int array, used by main.

PrintDomains - Class in loci.formats.tools

Utility class for printing a list of scientific domains supported by Bio-Formats, and all of the supported formats in each domain.

PrintDomains() - Constructor for class loci.formats.tools.PrintDomains

PrintFormatTable - Class in loci.formats.tools

Utility class for printing a list of formats supported by Bio-Formats.

PrintFormatTable() - Constructor for class loci.formats.tools.PrintFormatTable

PrintFormatTable.PrintStyles - Enum in loci.formats.tools

PrintFormatTable.PrintStyles() - Constructor for enum loci.formats.tools.PrintFormatTable.PrintStyles

printGridlines - Variable in class loci.poi.hssf.model.Sheet

PrintGridlinesRecord - Class in loci.poi.hssf.record

Title: Print Gridlines Record

PrintGridlinesRecord() - Constructor for class loci.poi.hssf.record.PrintGridlinesRecord

PrintGridlinesRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PrintGridlinesRecord

Constructs a PrintGridlines record and sets its fields appropriately.

PrintHeadersRecord - Class in loci.poi.hssf.record

Title: Print Headers Record

PrintHeadersRecord() - Constructor for class loci.poi.hssf.record.PrintHeadersRecord

PrintHeadersRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PrintHeadersRecord

Constructs a PrintHeaders record and sets its fields appropriately.

printIFD() - Method in class loci.formats.tiff.IFD

Prints the contents of this IFD.

printInfo - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Whether or not to print information found in codestream

println(String, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

println(String, int, int) - Method in interface jj2000.j2k.util.MsgLogger

Prints the string 'str' to the output device, appending a line return.

println(String, int, int) - Method in class jj2000.j2k.util.StreamMsgLogger

Prints the string 'str' to the 'out' stream, appending a newline.

printmsg(int, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

printmsg(int, String) - Method in interface jj2000.j2k.util.MsgLogger

Prints the message 'msg' to the output device, appending a newline, with severity 'sev'.

printmsg(int, String) - Method in class jj2000.j2k.util.StreamMsgLogger

Prints the message 'msg' to the output device, appending a newline, with severity 'sev'.

printOrder(String, Cache) - Static method in class loci.formats.tools.CacheConsole

Helper utility for outputing cache strategy's order, used by main.

printSetup - Variable in class loci.poi.hssf.model.Sheet

PrintSetupRecord - Class in loci.poi.hssf.record

Title: Print Setup Record

PrintSetupRecord() - Constructor for class loci.poi.hssf.record.PrintSetupRecord

PrintSetupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.PrintSetupRecord

Constructs a PrintSetup (SETUP) record and sets its fields appropriately.

printSetupRecord - Variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

printSizes(Component) - Static method in class loci.plugins.config.SpringUtilities

A debugging utility that prints to stdout the component's minimum, preferred, and maximum sizes.

printSource(String, Cache) - Static method in class loci.formats.tools.CacheConsole

Helper utility for outputing cache's associated source, used by main.

printStackTrace() - Method in exception loci.poi.hpsf.HPSFRuntimeException

printStackTrace(PrintStream) - Method in exception loci.poi.hpsf.HPSFRuntimeException

printStackTrace(PrintWriter) - Method in exception loci.poi.hpsf.HPSFRuntimeException

printStrategy(String, Cache) - Static method in class loci.formats.tools.CacheConsole

Helper utility for outputing cache's associated strategy, used by main.

printSupportedFormats(String[]) - Static method in class loci.formats.tools.PrintFormatTable

priorities - Variable in class loci.formats.cache.CacheStrategy

Priority for caching each axis.

PRIORITIES - Static variable in class loci.formats.gui.CacheComponent

PRIORITIES_CHANGED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating new axis priorities.

priority - Variable in class loci.formats.gui.CacheComponent

Combo boxes for choosing axis priority.

PRIORITY_VALUES - Static variable in class loci.formats.gui.CacheComponent

priorityIndex(int) - Method in class loci.formats.gui.CacheComponent

Converts enumerated priority value to priority chooser index.

priorityValue(int) - Method in class loci.formats.gui.CacheComponent

Converts priority chooser index to enumerated priority value.

probeLabel - Variable in class loci.formats.gui.ImageViewer

proc - Variable in class loci.plugins.util.RecordedImageProcessor

process(BufferedReader, boolean) - Static method in class loci.formats.tools.XMLIndent

process(String, BufferedReader) - Static method in class loci.formats.tools.XMLValidate

process - Variable in class loci.plugins.in.Calibrator

process - Variable in class loci.plugins.in.Colorizer

process - Variable in class loci.plugins.in.DisplayHandler

process - Variable in class loci.plugins.in.ImagePlusReader

Import preparation process managing Bio-Formats readers and other state.

process - Variable in class loci.plugins.in.ImporterDialog

process - Variable in class loci.plugins.in.ImporterPrompter

process(Model) - Method in interface loci.poi.hssf.eventmodel.ModelFactoryListener

Process a model.

processContinueRecord(byte[]) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

processContinueRecord(byte[]) - Method in class loci.poi.hssf.record.DrawingRecord

processEvents(HSSFRequest, InputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a DocumentInputStream into essentially Record events.

processFontRuns(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectRecord

processImageProgressWrapper(float) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Wrapper for the protected method processImageProgress So it can be access from the classes which are not in ImageReader hierarchy.

processImageProgressWrapper(float) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

Wrapper for the protected method processImageProgress So it can be access from the classes which are not in ImageWriter hierachy.

processImageProgressWrapper(float) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Wrapper for the protected method processImageProgress So it can be access from the classes which are not in ImageReader hierachy.

processImageUpdateWrapper(BufferedImage, int, int, int, int, int, int, int[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Wrapper for the protected method processImageUpdate So it can be access from the classes which are not in ImageReader hierarchy.

processImageUpdateWrapper(BufferedImage, int, int, int, int, int, int, int[]) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Wrapper for the protected method processImageUpdate So it can be access from the classes which are not in ImageReader hierachy.

processOnRegistration(ServiceRegistry, Class, String, ImageReaderWriterSpi, int, int) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

processPOIFSReaderEvent(POIFSReaderEvent) - Method in class loci.poi.poifs.eventfilesystem.POIFSReader.SampleListener

Method processPOIFSReaderEvent

processPOIFSReaderEvent(POIFSReaderEvent) - Method in interface loci.poi.poifs.eventfilesystem.POIFSReaderListener

Process a POIFSReaderEvent that this listener had registered for

processPOIFSWriterEvent(POIFSWriterEvent) - Method in interface loci.poi.poifs.filesystem.POIFSWriterListener

Process a POIFSWriterEvent that this listener had registered for

processProperties(BlockList, BlockList, Iterator, POIFSDocumentPath) - Method in class loci.poi.poifs.eventfilesystem.POIFSReader

processProperties(BlockList, BlockList, Iterator, DirectoryNode) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

processRawString(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectRecord

processRecord(Record) - Method in interface loci.poi.hssf.eventmodel.ERFListener

Process a Record.

processRecord(Record) - Method in class loci.poi.hssf.eventmodel.ListenerWrapper

processRecord(Record) - Method in class loci.poi.hssf.eventmodel.ModelFactory

processRecord(Record) - Method in class loci.poi.hssf.eventusermodel.AbortableHSSFListener

This method, inherited from HSSFListener is implemented as a stub.

processRecord(Record) - Method in interface loci.poi.hssf.eventusermodel.HSSFListener

process an HSSF Record.

processRecord(Record) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest

Called by HSSFEventFactory, passes the Record to each listener associated with a record.sid.

processRecords(InputStream) - Method in class loci.poi.hssf.eventmodel.EventRecordFactory

Create an array of records from an input stream

processWorkbookEvents(HSSFRequest, POIFSFileSystem) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a file into essentially record events.

produceFunctionData() - Static method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

produceHash() - Static method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

Produces the function table hashmap

producer - Variable in class loci.formats.codec.JPEGTileDecoder.TileConsumer

profile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

profile - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

ICC profile

PROFILE_EMBEDDED - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

PROFILE_LINKED - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

prog - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The progressive flag, false by default (see above).

progress - Variable in class loci.common.StatusEvent

Current progress value.

progress - Variable in class loci.formats.gui.DataConverter

progress(boolean, int, int) - Static method in class loci.plugins.BF

Progression - Class in jj2000.j2k.entropy

This class holds one of the different progression orders defined in the bit stream.

Progression(int, int, int, int, int, int) - Constructor for class jj2000.j2k.entropy.Progression

Constructor.

progressionName - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

The specified (tile-component) progression.

ProgressionSpec - Class in jj2000.j2k.entropy

This class extends ModuleSpec class for progression type(s) and progression order changes holding purposes.

ProgressionSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.ProgressionSpec

Creates a new ProgressionSpec object for the specified number of tiles and components.

ProgressionSpec(int, int, int, IntegerSpec, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.ProgressionSpec

Creates a new ProgressionSpec object for the specified number of tiles, components and the J2KImageWriteParamJava instance.

progressionType - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

See above.

progressionType - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies which type of progression should be used when generating the codestream.

ProgressionType - Interface in jj2000.j2k.codestream

This interface defines the identifiers for the different bit stream profiles and progression types.

progressive - Variable in class jj2000.j2k.image.DataBlk

The progressive attribute (false by default)

ProgressWatch - Interface in jj2000.j2k.util

Project - Class in ome.xml.model

Project() - Constructor for class ome.xml.model.Project

Default constructor.

Project(Element, OMEModel) - Constructor for class ome.xml.model.Project

Constructs Project recursively from an XML DOM tree.

Project(Project) - Constructor for class ome.xml.model.Project

Copy constructor.

projectLinks - Variable in class ome.xml.model.Annotation

projectLinks - Variable in class ome.xml.model.Dataset

ProjectRef - Class in ome.xml.model

ProjectRef() - Constructor for class ome.xml.model.ProjectRef

Default constructor.

ProjectRef(Element, OMEModel) - Constructor for class ome.xml.model.ProjectRef

Constructs ProjectRef recursively from an XML DOM tree.

ProjectRef(ProjectRef) - Constructor for class ome.xml.model.ProjectRef

Copy constructor.

projects - Variable in class ome.xml.model.Experimenter

projects - Variable in class ome.xml.model.ExperimenterGroup

projects - Variable in class ome.xml.model.OME

promptColors() - Method in class loci.plugins.in.ImporterPrompter

Prompts for color details, if necessary.

promptCrop() - Method in class loci.plugins.in.ImporterPrompter

Prompts for cropping details, if necessary.

promptFilePattern() - Method in class loci.plugins.in.ImporterPrompter

Prompts for the file pattern, if necessary.

promptId() - Method in class loci.plugins.in.ImporterPrompter

promptLicenseCode(String, boolean) - Static method in class loci.plugins.util.LuraWave

Prompts the user to enter their LuraWave license code in an ImageJ dialog window.

promptLocation() - Method in class loci.plugins.in.ImporterPrompter

promptMain() - Method in class loci.plugins.in.ImporterPrompter

promptMemory() - Method in class loci.plugins.in.ImporterPrompter

Prompts for confirmation of memory usage, if necessary.

promptRange() - Method in class loci.plugins.in.ImporterPrompter

Prompts for the range of planes to import, if necessary.

promptSeries() - Method in class loci.plugins.in.ImporterPrompter

Prompts for which series to import, if necessary.

promptSwap() - Method in class loci.plugins.in.ImporterPrompter

Prompts for dimension swapping parameters, if necessary.

promptUpgrade() - Method in class loci.plugins.in.ImporterPrompter

PROP_LUT - Static variable in class loci.plugins.in.ImagePlusReader

Special property prefix for storing planar LUTs.

PROP_SERIES - Static variable in class loci.plugins.in.ImagePlusReader

Special property for storing series number associated with the image.

properties - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

A Hashtable containing the image properties.

properties - Variable in class loci.poi.ddf.EscherOptRecord

properties - Static variable in class loci.poi.ddf.EscherProperties

properties - Variable in class loci.poi.hpsf.Section

Property - Class in loci.poi.hpsf

A property in a Section of a PropertySet.

Property(long, long, Object) - Constructor for class loci.poi.hpsf.Property

Creates a property.

Property(long, byte[], long, int, int) - Constructor for class loci.poi.hpsf.Property

Creates a Property instance by reading its bytes from the property set stream.

Property() - Constructor for class loci.poi.hpsf.Property

Creates an empty property.

Property - Class in loci.poi.poifs.property

This abstract base class is the ancestor of all classes implementing POIFS Property behavior.

Property() - Constructor for class loci.poi.poifs.property.Property

Default constructor

Property(int, byte[], int) - Constructor for class loci.poi.poifs.property.Property

Constructor from byte data

PROPERTY_FILE - Static variable in class loci.formats.FormatTools

PROPERTY_FILE - Static variable in class ome.xml.model.MapPairs

PROPERTY_SET_VOLUME - Static variable in class loci.formats.in.CellSensReader

PROPERTY_SIZE - Static variable in interface loci.poi.poifs.common.POIFSConstants

PROPERTY_TYPE_OFFSET - Static variable in interface loci.poi.poifs.property.PropertyConstants

PropertyBlock - Class in loci.poi.poifs.storage

A block of Property instances

PropertyBlock(Property[], int, int) - Constructor for class loci.poi.poifs.storage.PropertyBlock

Create a single instance initialized with default values

propertyChange(PropertyChangeEvent) - Method in class loci.formats.gui.PreviewPane

Property change event, to listen for when a new file is selected, or the file chooser closes.

PropertyConstants - Interface in loci.poi.poifs.property

Interface PropertyConstants

PropertyFactory - Class in loci.poi.poifs.property

Factory for turning an array of RawDataBlock instances containing Proprty data into an array of proper Property objects.

PropertyFactory() - Constructor for class loci.poi.poifs.property.PropertyFactory

PropertyIDMap - Class in loci.poi.hpsf.wellknown

This is a dictionary which maps property ID values to property ID strings.

PropertyIDMap(int, float) - Constructor for class loci.poi.hpsf.wellknown.PropertyIDMap

Creates a PropertyIDMap.

PropertyIDMap(Map) - Constructor for class loci.poi.hpsf.wellknown.PropertyIDMap

Creates a PropertyIDMap backed by another map.

PropertySet - Class in loci.poi.hpsf

Represents a property set in the Horrible Property Set Format (HPSF).

PropertySet() - Constructor for class loci.poi.hpsf.PropertySet

Creates an empty (uninitialized) PropertySet.

PropertySet(InputStream) - Constructor for class loci.poi.hpsf.PropertySet

Creates a PropertySet instance from an InputStream in the Horrible Property Set Format.

PropertySet(byte[], int, int) - Constructor for class loci.poi.hpsf.PropertySet

Creates a PropertySet instance from a byte array that represents a stream in the Horrible Property Set Format.

PropertySet(byte[]) - Constructor for class loci.poi.hpsf.PropertySet

Creates a PropertySet instance from a byte array that represents a stream in the Horrible Property Set Format.

PropertySetFactory - Class in loci.poi.hpsf

Factory class to create instances of SummaryInformation, DocumentSummaryInformation and PropertySet.

PropertySetFactory() - Constructor for class loci.poi.hpsf.PropertySetFactory

PropertyTable - Class in loci.poi.poifs.property

This class embodies the Property Table for the filesystem; this is basically the dsirectory for all of the documents in the filesystem.

PropertyTable() - Constructor for class loci.poi.poifs.property.PropertyTable

Default constructor

PropertyTable(int, RawDataBlockList) - Constructor for class loci.poi.poifs.property.PropertyTable

reading constructor (used when we've read in a file and we want to extract the property table from it).

propertyValue - Variable in class loci.poi.ddf.EscherSimpleProperty

propName(short) - Method in class loci.poi.ddf.EscherDump

Returns a property name given a property id.

protect - Variable in class loci.poi.hssf.model.Sheet

PROTECTION__LOCKADJUSTHANDLES - Static variable in class loci.poi.ddf.EscherProperties

PROTECTION__LOCKAGAINSTGROUPING - Static variable in class loci.poi.ddf.EscherProperties

PROTECTION__LOCKAGAINSTSELECT - Static variable in class loci.poi.ddf.EscherProperties

PROTECTION__LOCKASPECTRATIO - Static variable in class loci.poi.ddf.EscherProperties

PROTECTION__LOCKCROPPING - Static variable in class loci.poi.ddf.EscherProperties

PROTECTION__LOCKPOSITION - Static variable in class loci.poi.ddf.EscherProperties

PROTECTION__LOCKROTATION - Static variable in class loci.poi.ddf.EscherProperties

PROTECTION__LOCKTEXT - Static variable in class loci.poi.ddf.EscherProperties

PROTECTION__LOCKVERTICES - Static variable in class loci.poi.ddf.EscherProperties

ProtectionRev4Record - Class in loci.poi.hssf.record

Title: Protection Revision 4 Record

ProtectionRev4Record() - Constructor for class loci.poi.hssf.record.ProtectionRev4Record

ProtectionRev4Record(RecordInputStream) - Constructor for class loci.poi.hssf.record.ProtectionRev4Record

Constructs a ProtectionRev4 record and sets its fields appropriately.

ProtectRecord - Class in loci.poi.hssf.record

Title: Protect Record

ProtectRecord() - Constructor for class loci.poi.hssf.record.ProtectRecord

ProtectRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ProtectRecord

Constructs a Protect record and sets its fields appropriately.

protectSheet(String, boolean, boolean) - Method in class loci.poi.hssf.model.Sheet

protect a spreadsheet with a password (not encypted, just sets protect flags and the password.

protectSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets the protection enabled as well as the password

protocolDescription - Variable in class ome.xml.model.Screen

protocolIdentifier - Variable in class ome.xml.model.Screen

protpos - Variable in class loci.poi.hssf.model.WorkbookRecordList

pruneINI() - Method in class loci.tests.testng.Configuration

pruneNodes(Node, boolean) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Removes nonessential nodes from a JPEG native image metadata tree.

PS - Static variable in class ome.units.UNITS

PSD_MAGIC_STRING - Static variable in class loci.formats.in.PSDReader

PSDReader - Class in loci.formats.in

PSDReader is the file format reader for Photoshop PSD files.

PSDReader() - Constructor for class loci.formats.in.PSDReader

Constructs a new PSD reader.

PSI - Static variable in class ome.units.UNITS

psot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT

pss - Variable in class jj2000.j2k.decoder.DecoderSpecs

Precinct partition specifications

pss - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The precinct partition specifications

pss - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The precinct partition specifications

PT - Static variable in class ome.units.UNITS

Ptg - Class in loci.poi.hssf.record.formula

Ptg() - Constructor for class loci.poi.hssf.record.formula.Ptg

ptgClass - Variable in class loci.poi.hssf.record.formula.Ptg

ptyEnd - Variable in class loci.formats.in.FV1000Reader

ptyPattern - Variable in class loci.formats.in.FV1000Reader

ptyStart - Variable in class loci.formats.in.FV1000Reader

Pulse - Enum in ome.xml.model.enums

Pulse(String) - Constructor for enum ome.xml.model.enums.Pulse

pulse - Variable in class ome.xml.model.Laser

PulseEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Pulse.

PulseEnumHandler() - Constructor for class ome.xml.model.enums.handlers.PulseEnumHandler

pump - Variable in class ome.xml.model.Laser

Pump - Class in ome.xml.model

Pump() - Constructor for class ome.xml.model.Pump

Default constructor.

Pump(Element, OMEModel) - Constructor for class ome.xml.model.Pump

Constructs Pump recursively from an XML DOM tree.

Pump(Pump) - Constructor for class ome.xml.model.Pump

Copy constructor.

pushExpressionToken(Ptg) - Method in class loci.poi.hssf.record.FormulaRecord

push a token onto the stack

put(String, Object) - Method in class loci.formats.in.BaseTiffReader

put(String, int) - Method in class loci.formats.in.BaseTiffReader

put(String, boolean) - Method in class loci.formats.in.BaseTiffReader

put(String, byte) - Method in class loci.formats.in.BaseTiffReader

put(String, char) - Method in class loci.formats.in.BaseTiffReader

put(String, double) - Method in class loci.formats.in.BaseTiffReader

put(String, float) - Method in class loci.formats.in.BaseTiffReader

put(String, long) - Method in class loci.formats.in.BaseTiffReader

put(String, short) - Method in class loci.formats.in.BaseTiffReader

put(String, IFD, int) - Method in class loci.formats.in.BaseTiffReader

put(Object, Object) - Method in class loci.poi.hpsf.CustomProperties

Puts a CustomProperty into this map.

put(CustomProperty) - Method in class loci.poi.hpsf.CustomProperties

Puts a CustomProperty that has not yet a valid ID into this map.

put(String, String) - Method in class loci.poi.hpsf.CustomProperties

Adds a named string property.

put(String, Long) - Method in class loci.poi.hpsf.CustomProperties

Adds a named long property.

put(String, Double) - Method in class loci.poi.hpsf.CustomProperties

Adds a named double property.

put(String, Integer) - Method in class loci.poi.hpsf.CustomProperties

Adds a named integer property.

put(String, Boolean) - Method in class loci.poi.hpsf.CustomProperties

Adds a named boolean property.

put(String, Date) - Method in class loci.poi.hpsf.CustomProperties

Adds a named date property.

put(long, String) - Method in class loci.poi.hpsf.wellknown.PropertyIDMap

Puts a ID string for an ID into the PropertyIDMap.

put(byte[], PropertyIDMap) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Associates a section format ID with a PropertyIDMap.

put(Object, Object) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Deprecated.

Use SectionIDMap.put(byte[], PropertyIDMap) instead!

put(Object, Object) - Method in class loci.poi.util.BinaryTree

Associates the specified value with the specified key in this map.

put(IFDEntry, byte[]) - Method in class ome.jxr.ifd.IFDMetadata

putColumn(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor

putCompressedUnicode(String, byte[], int) - Static method in class loci.poi.util.StringUtil

Takes a unicode (java) string, and returns it as 8 bit data (in ISO-8859-1 codepage).

putDouble(byte[], int, double) - Static method in class loci.poi.util.LittleEndian

put a double value into a byte array

putDouble(byte[], double) - Static method in class loci.poi.util.LittleEndian

put a double value into beginning of a byte array

putIFDValue(int, Object) - Method in class loci.formats.tiff.IFD

Adds a directory entry to this IFD.

putIFDValue(int, short) - Method in class loci.formats.tiff.IFD

Adds a directory entry of type BYTE to this IFD.

putIFDValue(int, int) - Method in class loci.formats.tiff.IFD

Adds a directory entry of type SHORT to this IFD.

putIFDValue(int, long) - Method in class loci.formats.tiff.IFD

Adds a directory entry of type LONG to this IFD.

putInIdleList(ThreadPool.ThreadPoolThread) - Method in class jj2000.j2k.util.ThreadPool

Puts the thread 't' in the idle list.

putInt(String, IFD, int) - Method in class loci.formats.in.BaseTiffReader

putInt(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

put an int value into a byte array

putInt(byte[], int) - Static method in class loci.poi.util.LittleEndian

put an int value into beginning of a byte array

putLong(byte[], int, long) - Static method in class loci.poi.util.LittleEndian

put a long value into a byte array

putLong(byte[], long) - Static method in class loci.poi.util.LittleEndian

put a long value into beginning of a byte array

putNumber(byte[], int, long, int) - Static method in class loci.poi.util.LittleEndian

Description of the Method

putPixel(int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

putPixel(int, int, int[]) - Method in class loci.plugins.util.RecordedImageProcessor

putPixelValue(int, int, double) - Method in class loci.plugins.util.RecordedImageProcessor

putRow(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor

putShort(byte[], int, short) - Static method in class loci.poi.util.LittleEndian

put a short value into a byte array

putShort(byte[], short) - Static method in class loci.poi.util.LittleEndian

put a short value into beginning of a byte array

putShortArray(byte[], int, short[]) - Static method in class loci.poi.util.LittleEndian

put a array of shorts into a byte array

putString(String, IFD, int) - Method in class loci.formats.in.BaseTiffReader

putTableName(IniTable, IFormatReader, String) - Method in class loci.tests.testng.Configuration

putUnicodeBE(String, byte[], int) - Static method in class loci.poi.util.StringUtil

Takes a unicode string, and returns it as big endian (most important byte first) bytes in the supplied byte array.

putUnicodeLE(String, byte[], int) - Static method in class loci.poi.util.StringUtil

Takes a unicode string, and returns it as little endian (most important byte last) bytes in the supplied byte array.

putUShort(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

put an unsigned short value into a byte array

PV - Static variable in class ome.units.UNITS

pw - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

Reference to the ProgressWatch instance if any

PW - Static variable in class ome.units.UNITS

px - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The horizontal coordinate of the tiling origin in the canvas system, on the reference grid.

pxlStride - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The strides for pixel, band, and scanline.

py - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The vertical coordinate of the tiling origin in the canvas system, on the reference grid.

pyramidHeight - Variable in class loci.formats.in.NDPIReader

pyramids - Variable in class loci.formats.in.CellSensReader

PyramidTiffReader - Class in loci.formats.in

PyramidTiffReader is the file format reader for pyramid TIFFs.

PyramidTiffReader() - Constructor for class loci.formats.in.PyramidTiffReader

Constructs a new pyramid TIFF reader.

pyramidType - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

Q

Q_TYPE_SCALAR_DZ - Static variable in interface jj2000.j2k.quantization.QuantizationType

The ID of the scalar deadzone dequantizer

qcc - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the QCC marker segments found in main and first tile-part header.

QCC - Static variable in interface jj2000.j2k.codestream.Markers

Quantization component (QCC): 0xFF5D

QCC_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for QCC marker segment found

qcd - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the QCD marker segments found in main and first tile-part header.

QCD - Static variable in interface jj2000.j2k.codestream.Markers

Quantization default (QCD): 0xFF5C

QCD_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for QCD marker segment found

qe - Static variable in class jj2000.j2k.entropy.decoder.MQDecoder

The data structures containing the probabilities for the LPS

qe - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

The data structures containing the probabilities for the LPS

qName - Variable in class loci.formats.in.FEITiffReader.FEIHandler

qName - Variable in class loci.formats.in.ImaconReader.ImaconHandler

qName - Variable in class loci.formats.in.ScanrReader.ScanrHandler

QQ - Static variable in class loci.formats.in.DicomReader

qsss - Variable in class jj2000.j2k.decoder.DecoderSpecs

Quantization normalized base step size specifications

qsss - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer

The quantizer step sizes spec

qsss - Variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

The quantization step size specifications

QSTEP_EXPONENT_BITS - Static variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

The number of exponent bits for the quantization steps

QSTEP_MANTISSA_BITS - Static variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

The number of mantissa bits for the quantization steps

QSTEP_MAX_EXPONENT - Static variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

The maximum value of the exponent for the quantization steps

QSTEP_MAX_MANTISSA - Static variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

The maximum value of the mantissa for the quantization steps

qtJava - Variable in class loci.formats.gui.DataConverter

QTReader - Class in loci.formats.in

QTReader is the file format reader for QuickTime movie files.

QTReader() - Constructor for class loci.formats.in.QTReader

Constructs a new QuickTime reader.

QTRLECodec - Class in loci.formats.codec

Methods for compressing and decompressing data using QuickTime RLE.

QTRLECodec() - Constructor for class loci.formats.codec.QTRLECodec

qts - Variable in class jj2000.j2k.decoder.DecoderSpecs

Quantization type specifications

qts - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer

The quantizer type spec

qts - Variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

The quantization type specifications

qtTools - Variable in class loci.formats.in.PictReader

Helper reader in case this one fails.

QTWidgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats QuickTime support.

QTWidgets() - Constructor for class loci.plugins.config.QTWidgets

QTWriter - Class in loci.formats.out

QTWriter is the file format writer for uncompressed QuickTime movie files.

QTWriter() - Constructor for class loci.formats.out.QTWriter

qType - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

qType - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD

quality - Variable in class loci.formats.codec.CodecOptions

Compression quality level as it would be provided to: ImageWriteParam.compressionQuality (WRITE).

QUALITY - Static variable in class loci.formats.in.NikonReader

quality - Variable in class loci.formats.out.LegacyQTWriter

The quality to use.

quality - Variable in class loci.formats.out.QTWriter

The quality to use.

QUALITY_HIGH - Static variable in class loci.formats.out.QTWriter

Value indicating High quality.

QUALITY_LOW - Static variable in class loci.formats.out.QTWriter

Value indicating Low quality.

QUALITY_MAXIMUM - Static variable in class loci.formats.out.QTWriter

Value indicating Maximum quality.

QUALITY_NORMAL - Static variable in class loci.formats.out.QTWriter

Value indicating Normal quality.

Quantity - Class in ome.units.quantity

A wrapper for the Quantity class from the units implimintation.

Quantity() - Constructor for class ome.units.quantity.Quantity

quantizationStep - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

This parameter specifies the base normalized quantization step size for the tiles/components.

quantizationType - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies which quantization type to use for specified tiles/components.

QuantizationType - Interface in jj2000.j2k.quantization

This interface defines the IDs of the possible quantization types.

Quantizer - Class in jj2000.j2k.quantization.quantizer

This abstract class provides the general interface for quantizers.

Quantizer(CBlkWTDataSrc) - Constructor for class jj2000.j2k.quantization.quantizer.Quantizer

Initializes the source of wavelet transform coefficients.

QuantStepSizeSpec - Class in jj2000.j2k.quantization

This class extends ModuleSpec class in order to hold specifications about the quantization base normalized step size to use in each tile-component.

QuantStepSizeSpec(int, int, byte) - Constructor for class jj2000.j2k.quantization.QuantStepSizeSpec

Constructs an empty 'QuantStepSizeSpec' with specified number of tile and components.

QuantStepSizeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.quantization.QuantStepSizeSpec

Constructs a new 'QuantStepSizeSpec' for the specified number of components and tiles and the arguments of "-Qstep" option.

QuantTypeSpec - Class in jj2000.j2k.quantization

This class extends ModuleSpec class in order to hold specifications about the quantization type to use in each tile-component.

QuantTypeSpec(int, int, byte) - Constructor for class jj2000.j2k.quantization.QuantTypeSpec

Constructs an empty 'QuantTypeSpec' with specified number of tile and components.

QuantTypeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.quantization.QuantTypeSpec

Constructs a new 'QuantTypeSpec' for the specified number of components and tiles and the arguments of "-Qtype" option.

query_order - Variable in class mdbtools.libmdb.MdbColumn

QuesantReader - Class in loci.formats.in

QuesantReader is the file format reader for Quesant .afm files.

QuesantReader() - Constructor for class loci.formats.in.QuesantReader

Constructs a new Quesant reader.

quit - Variable in class loci.formats.cache.CacheUpdater

quit() - Method in class loci.formats.cache.CacheUpdater

R

r - Variable in class jj2000.j2k.codestream.PrecInfo

Resolution level index

r - Variable in class jj2000.j2k.roi.encoder.ROI

radius of circular ROI

r - Variable in class loci.formats.gui.LegacyQTTools

Reflection tool for QuickTime for Java calls.

r - Variable in class loci.formats.in.LegacyQTReader

Reflection tool for QuickTime for Java calls.

r - Variable in class loci.formats.in.LeicaSCNReader.Dimension

r - Variable in class loci.formats.in.TiffJAIReader

Reflection tool for JAI calls.

r - Variable in class loci.formats.out.LegacyQTWriter

Reflection tool for QuickTime for Java calls.

r - Variable in class loci.plugins.macro.LociFunctions

r - Variable in class loci.plugins.util.VirtualImagePlus

R_NUMS - Static variable in class loci.common.CBZip2InputStream

RAD - Static variable in class ome.units.UNITS

RADIAN - Static variable in class ome.units.UNITS

radiusX - Variable in class ome.xml.model.Ellipse

radiusY - Variable in class ome.xml.model.Ellipse

raf - Variable in class loci.common.FileHandle

The random access file object backing this FileHandle.

raf - Variable in class loci.common.NIOFileHandle

The random access file object backing this FileHandle.

raf - Variable in class loci.common.NIOInputStream

raf - Variable in class loci.common.RandomAccessInputStream

ralloc - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Reference to the rate allocator

RAND_PART_A_STATE - Static variable in class loci.common.CBZip2InputStream

RAND_PART_B_STATE - Static variable in class loci.common.CBZip2InputStream

RAND_PART_C_STATE - Static variable in class loci.common.CBZip2InputStream

RandomAccess - Interface in mdbtools.publicapi

RandomAccessInputStream - Class in loci.common

Top-level class for reading from various data sources.

RandomAccessInputStream(String) - Constructor for class loci.common.RandomAccessInputStream

Constructs a hybrid RandomAccessFile/DataInputStream around the given file.

RandomAccessInputStream(String, int) - Constructor for class loci.common.RandomAccessInputStream

Constructs a hybrid RandomAccessFile/DataInputStream around the given file.

RandomAccessInputStream(IRandomAccess) - Constructor for class loci.common.RandomAccessInputStream

Constructs a random access stream around the given handle.

RandomAccessInputStream(IRandomAccess, String) - Constructor for class loci.common.RandomAccessInputStream

Constructs a random access stream around the given handle, and with the associated file path.

RandomAccessInputStream(byte[]) - Constructor for class loci.common.RandomAccessInputStream

Constructs a random access stream around the given byte array.

RandomAccessIO - Interface in jj2000.j2k.io

This abstract class defines the interface to perform random access I/O.

RandomAccessOutputStream - Class in loci.common

RandomAccessOutputStream provides methods for writing to files and byte arrays.

RandomAccessOutputStream(String) - Constructor for class loci.common.RandomAccessOutputStream

Constructs a random access stream around the given file.

RandomAccessOutputStream(IRandomAccess) - Constructor for class loci.common.RandomAccessOutputStream

Constructs a random access stream around the given handle.

RandomAccessOutputStream(byte[]) - Constructor for class loci.common.RandomAccessOutputStream

Constructs a random access stream around the given byte array.

range - Variable in class loci.formats.cache.CacheStrategy

Number of planes to cache along each axis.

range - Variable in class loci.formats.gui.CacheComponent

Spinners for choosing range of slices to cache.

RANGE_CHANGED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating new planar ordering.

RangeAddress - Class in loci.poi.hssf.util

Title: Range Address

RangeAddress(String) - Constructor for class loci.poi.hssf.util.RangeAddress

Accepts an external reference from excel.

RangeAddress(int, int, int, int) - Constructor for class loci.poi.hssf.util.RangeAddress

RangeDialog - Class in loci.plugins.in

Bio-Formats Importer range chooser dialog box.

RangeDialog(ImportProcess) - Constructor for class loci.plugins.in.RangeDialog

Creates a range chooser dialog for the Bio-Formats Importer.

RangePtg - Class in loci.poi.hssf.record.formula

RangePtg() - Constructor for class loci.poi.hssf.record.formula.RangePtg

RangePtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.RangePtg

ras - Variable in class com.sun.media.imageioimpl.common.SingleTileRenderedImage

rasForATile - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The raster for medialib tiles to share.

raster - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

raster - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The input source raster.

raster(int[]) - Method in class loci.formats.cache.CacheStrategy

Shortcut for converting N-D position to rasterized position.

rasterToPosition(int[], int) - Static method in class loci.formats.FormatTools

Computes a unique N-D position corresponding to the given rasterized index value.

rasterToPosition(int[], int, int[]) - Static method in class loci.formats.FormatTools

Computes a unique N-D position corresponding to the given rasterized index value.

ratebufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The buffer for rate values (avoids reallocation for each code-block), for each thread.

rateReached - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

raw - Variable in class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam

RAW - Static variable in class loci.formats.in.BMPReader

Compression types.

RAW - Static variable in class loci.formats.in.CellSensReader

raw_pictureData - Variable in class loci.poi.ddf.EscherMetafileBlip

raw_pictureData - Variable in class loci.poi.ddf.EscherPictBlip

rawBits - Variable in class loci.formats.in.PGMReader

rawCount - Variable in class loci.formats.in.BaseZeissReader

rawData - Variable in class loci.poi.hssf.record.AbstractEscherHolderRecord

RawDataBlock - Class in loci.poi.poifs.storage

A big block created from an InputStream, holding the raw data

RawDataBlock(RandomAccessInputStream, int, long) - Constructor for class loci.poi.poifs.storage.RawDataBlock

Constructor RawDataBlock

RawDataBlockList - Class in loci.poi.poifs.storage

A list of RawDataBlocks instances, and methods to manage the list

RawDataBlockList(RandomAccessInputStream, int) - Constructor for class loci.poi.poifs.storage.RawDataBlockList

Constructor RawDataBlockList

rawImage - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

A BufferedImage for the decodeRaw method to write into.

RawImageInputStream - Class in com.sun.media.imageio.stream

This class defines the content of the ImageInputStream containing several raw images with the same image type: the number of the images, the image type, the offset for the first sample of each image, and the image size information.

RawImageInputStream(ImageInputStream, ImageTypeSpecifier, long[], Dimension[]) - Constructor for class com.sun.media.imageio.stream.RawImageInputStream

Constructor.

RawImageInputStream(ImageInputStream, SampleModel, long[], Dimension[]) - Constructor for class com.sun.media.imageio.stream.RawImageInputStream

Constructor.

RawImageInputStream(ImageInputStream, InputSource) - Constructor for class com.sun.media.imageio.stream.RawImageInputStream

Constructor.

RawImageReader - Class in com.sun.media.imageioimpl.plugins.raw

This class is the Java Image IO plugin reader for Raw images.

RawImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Constructs RawImageReader from the provided ImageReaderSpi.

RawImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.raw

RawImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

RawImageWriteParam - Class in com.sun.media.imageioimpl.plugins.raw

A subclass of ImageWriteParam for writing images in the RAW format.

RawImageWriteParam(Locale) - Constructor for class com.sun.media.imageioimpl.plugins.raw.RawImageWriteParam

Constructor to set locales.

RawImageWriter - Class in com.sun.media.imageioimpl.plugins.raw

The Java Image IO plugin writer for encoding a binary RenderedImage into a Raw format.

RawImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

Constructs RawImageWriter based on the provided ImageWriterSpi.

RawImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.raw

RawImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

rawMagRefPass(DataBlk, ByteToBitInput, int, int[], boolean) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Performs the magnitude refinement pass on the specified data and bit-plane.

rawMagRefPass(CBlkWTData, BitToByteOutput, boolean, int, int[], int[], int[], int, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Performs the magnitude refinement pass on the specified data and bit-plane, without using the arithmetic coder.

RawRenderedImage - Class in com.sun.media.imageioimpl.plugins.raw

RawRenderedImage(RawImageInputStream, RawImageReader, ImageReadParam, int) - Constructor for class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

rawSigProgPass(DataBlk, ByteToBitInput, int, int[], boolean) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Performs the significance propagation pass on the specified data and bit-plane.

rawSigProgPass(CBlkWTData, BitToByteOutput, boolean, int, int[], int[], int[], int, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Performs the significance propagation pass on the specified data and bit-plane, without using the arithmetic coder.

rawSize - Variable in class loci.formats.in.NativeQTReader

Raw plane size, in bytes.

rb - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The number of bits that determine the nominal dynamic range

rb - Variable in class jj2000.j2k.image.input.ImgReaderPGM

The number of bits that determine the nominal dynamic range

rb - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer

The "range bits" for each transformed component

rc - Variable in class loci.formats.gui.DataConverter

rcom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM

RCOM_GEN_USE - Static variable in interface jj2000.j2k.codestream.Markers

General use registration value (COM): 0x0001

RD_SUMMARY_OFF - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The normalization offset for the R-D summary table

RD_SUMMARY_SIZE - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The size of the summary table

RDSlopesRates - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The R-D summary information collected from the coding of all code-blocks.

rdThreshold - Variable in class jj2000.j2k.entropy.encoder.EBCOTLayer

The rate-distortion threshold associated with the bit-stream layer.

re - Variable in class jj2000.j2k.entropy.Progression

Resolution index for the end of a progression.

read() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

read(byte[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

read() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

read(byte[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

read() - Method in class com.sun.media.imageio.stream.RawImageInputStream

read(byte[]) - Method in class com.sun.media.imageio.stream.RawImageInputStream

read(byte[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

read() - Method in class com.sun.media.imageio.stream.SegmentedImageInputStream

Reads the next byte of data from the input stream.

read(byte[], int, int) - Method in class com.sun.media.imageio.stream.SegmentedImageInputStream

Reads up to len bytes of data from the input stream into an array of bytes.

read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

read() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

read(byte[], int, int) - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

read(ImageInputStream, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Reads a box from the ImageInputStream

read() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

read() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

read(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

read(byte[], int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

read(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

read() - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer

Reads the next byte of data from this input stream.

read() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Reads an unsigned byte of data from the stream.

read() - Method in interface jj2000.j2k.io.RandomAccessIO

Reads a byte of data from the stream.

read() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads a byte of data from the stream.

read(byte[]) - Method in class loci.common.ByteArrayHandle

read(byte[], int, int) - Method in class loci.common.ByteArrayHandle

read(ByteBuffer) - Method in class loci.common.ByteArrayHandle

read(ByteBuffer, int, int) - Method in class loci.common.ByteArrayHandle

read() - Method in class loci.common.CBZip2InputStream

read(byte[], int, int) - Method in class loci.common.CBZip2InputStream

read(byte[]) - Method in class loci.common.FileHandle

read(byte[], int, int) - Method in class loci.common.FileHandle

read(ByteBuffer) - Method in class loci.common.FileHandle

read(ByteBuffer, int, int) - Method in class loci.common.FileHandle

read(byte[]) - Method in interface loci.common.IRandomAccess

Reads up to b.length bytes of data from this stream into an array of bytes.

read(byte[], int, int) - Method in interface loci.common.IRandomAccess

Reads up to len bytes of data from this stream into an array of bytes.

read(ByteBuffer) - Method in interface loci.common.IRandomAccess

Reads up to buffer.capacity() bytes of data from this stream into a ByteBuffer.

read(ByteBuffer, int, int) - Method in interface loci.common.IRandomAccess

Reads up to len bytes of data from this stream into a ByteBuffer.

read(byte[]) - Method in class loci.common.NIOFileHandle

read(byte[], int, int) - Method in class loci.common.NIOFileHandle

read(ByteBuffer) - Method in class loci.common.NIOFileHandle

read(ByteBuffer, int, int) - Method in class loci.common.NIOFileHandle

read() - Method in class loci.common.NIOInputStream

Alias for readByte().

read(byte[]) - Method in class loci.common.NIOInputStream

Read bytes from the stream into the given array.

read(byte[], int, int) - Method in class loci.common.NIOInputStream

Read n bytes from the stream into the given array at the specified offset.

read(byte[]) - Method in class loci.common.RandomAccessInputStream

Read bytes from the stream into the given array.

read(byte[], int, int) - Method in class loci.common.RandomAccessInputStream

Read n bytes from the stream into the given array at the specified offset.

read(ByteBuffer) - Method in class loci.common.RandomAccessInputStream

Read bytes from the stream into the given buffer.

read(ByteBuffer, int, int) - Method in class loci.common.RandomAccessInputStream

Read n bytes from the stream into the given buffer at the specified offset.

read() - Method in class loci.common.RandomAccessInputStream

read(Kryo, Input) - Method in class loci.common.RandomAccessInputStream

read(byte[]) - Method in class loci.common.StreamHandle

read(byte[], int, int) - Method in class loci.common.StreamHandle

read(ByteBuffer) - Method in class loci.common.StreamHandle

read(ByteBuffer, int, int) - Method in class loci.common.StreamHandle

read(int, byte[]) - Method in class loci.formats.in.AmiraReader.ASCII

read(byte[], int) - Method in class loci.formats.in.AmiraReader.HxRLE

read(int, byte[]) - Method in class loci.formats.in.AmiraReader.HxRLE

read(int, byte[]) - Method in class loci.formats.in.AmiraReader.HxZip

read(int, byte[]) - Method in interface loci.formats.in.AmiraReader.PlaneReader

read() - Method in class loci.formats.in.APNGReader.PNGInputStream

read(byte[], int, int) - Method in class loci.formats.in.APNGReader.PNGInputStream

read() - Method in class loci.formats.in.ZeissLSMReader.BeamSplitter

read() - Method in class loci.formats.in.ZeissLSMReader.DataChannel

read() - Method in class loci.formats.in.ZeissLSMReader.DetectionChannel

read() - Method in class loci.formats.in.ZeissLSMReader.IlluminationChannel

read() - Method in class loci.formats.in.ZeissLSMReader.Laser

read() - Method in class loci.formats.in.ZeissLSMReader.Recording

read() - Method in class loci.formats.in.ZeissLSMReader.SubBlock

read() - Method in class loci.formats.in.ZeissLSMReader.Track

read(Kryo, Input) - Method in class loci.formats.services.NetCDFServiceImpl

read(byte[], int) - Method in class loci.poi.hpsf.ClassID

Reads the class ID's value from a byte array by turning little-endian into big-endian.

read(byte[], int, int, long, int) - Static method in class loci.poi.hpsf.VariantSupport

Reads a variant type from a byte array.

read() - Method in class loci.poi.hssf.record.RecordInputStream

This method will read a byte from the current record

read(RandomAccessInputStream, int) - Method in class loci.poi.poifs.eventfilesystem.POIFSReader

Read from an InputStream and process the documents we get

read() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Reads the next byte of data from the input stream.

read(byte[]) - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Reads some number of bytes from the input stream and stores them into the buffer array b.

read(byte[], int, int) - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Reads up to len bytes of data from the input stream into an array of bytes.

read(byte[], int, RandomAccessInputStream) - Method in class loci.poi.poifs.filesystem.POIFSDocument

read data from the internal stores

read(DocumentBlock[], byte[], int, int, RandomAccessInputStream) - Static method in class loci.poi.poifs.storage.DocumentBlock

read data from an array of DocumentBlocks

read(BlockWritable[], byte[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

read data from an array of SmallDocumentBlocks

read() - Method in class loci.poi.util.BlockingInputStream

read(byte[]) - Method in class loci.poi.util.BlockingInputStream

We had to revert to byte per byte reading to keep with slow network connections on one hand, without missing the end-of-file.

read(byte[], int, int) - Method in class loci.poi.util.BlockingInputStream

read(byte[], int, int) - Method in class mdbtools.examples.MemoryRandomAccess

read(byte[], int, int) - Method in class mdbtools.jdbc2.File

read(byte[], int, int) - Method in interface mdbtools.publicapi.RandomAccess

read0() - Method in class loci.common.CBZip2InputStream

read16Bit(short[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

read1Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

read1Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

read24Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

read32Bit(int[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

read4Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

read4Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

read8Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

read8Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

read_pg_if(MdbHandle, Holder, int) - Static method in class mdbtools.libmdb.Table

readAborted(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

readAbsoluteZValid() - Method in class loci.formats.in.MetamorphReader

readAllContinuedRemainder() - Method in class loci.poi.hssf.record.RecordInputStream

Deprecated.

Best to write a input stream that wraps this one where there is special sub record that may overlap continue records.

readAndBuffer(BufferedRandomAccessFile) - Method in class jj2000.j2k.util.CodestreamManipulator

This method reads and buffers the tile headers, packet headers and packet data.

readArea(Element, int, double, double, int, int) - Method in class loci.formats.in.CellVoyagerReader

readAsRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

readAsRaster(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

readAsRenderedImage(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

readAsRenderedImage(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

readAsRenderedImage(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

readBit() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readBit() - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader

Reads a single bit from the input.

readBit() - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput

Reads from the bit stream one bit.

readBits(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readBits(int) - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader

Reads a specified number of bits and returns them in a single integer.

readBits(int) - Method in class loci.common.RandomAccessInputStream

Returns an int value representing the value of the bits read from the byte array, from the current position.

readBits(int, int, int) - Method in class ome.metakit.ColumnMap

Read a bit-packed integer value.

readBitsPerComponentBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

Read the bits per component.

readBlock() - Method in class loci.formats.in.GIFReader

Reads the next variable length block.

readBoolean() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readBoolean() - Method in class loci.common.ByteArrayHandle

readBoolean() - Method in class loci.common.FileHandle

readBoolean() - Method in class loci.common.NIOFileHandle

readBoolean() - Method in class loci.common.NIOInputStream

Read an input byte and return true if the byte is nonzero.

readBoolean() - Method in class loci.common.RandomAccessInputStream

Read an input byte and return true if the byte is nonzero.

readBoolean() - Method in class loci.common.StreamHandle

readBpInt(RandomAccessInputStream) - Static method in class ome.metakit.MetakitTools

Read a byte-packed integer from the given RandomAccessInputStream.

readBufferedImage() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

readByte() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readByte() - Method in interface jj2000.j2k.io.BinaryDataInput

Should read a signed byte (i.e., 8 bit) from the input.

readByte() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Reads a signed byte (i.e., 8 bit) from the input.

readByte() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads a signed byte (8 bit) from the input.

readByte() - Method in class loci.common.ByteArrayHandle

readByte() - Method in class loci.common.FileHandle

readByte() - Method in class loci.common.NIOFileHandle

readByte() - Method in class loci.common.NIOInputStream

Read one byte and return it.

readByte() - Method in class loci.common.RandomAccessInputStream

Read one byte and return it.

readByte() - Method in class loci.common.StreamHandle

readByte() - Method in class loci.formats.in.APNGReader.PNGInputStream

readByte() - Method in class loci.formats.tools.AmiraParameters

readByte() - Method in class loci.poi.hssf.record.RecordInputStream

readByteArray(String) - Method in interface loci.formats.services.JHDFService

Reads a multi-dimensional byte array from path.

readByteArray(String) - Method in class loci.formats.services.JHDFServiceImpl

readByteBlockArray(String, int[], int[]) - Method in interface loci.formats.services.JHDFService

Reads a multi-dimensional sub-block byte array from path.

readByteBlockArray(String, int[], int[]) - Method in class loci.formats.services.JHDFServiceImpl

readBytes(IIOByteBuffer, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readBytes(int, byte[], int, int, int, int) - Method in interface loci.formats.services.WlzService

Reads a rectangle of bytes in an x-y plane from the opened Woolz object.

readBytes(int, byte[], int, int, int, int) - Method in class loci.formats.services.WlzServiceImpl

readBytes2DDomObj(byte[], int, int, int, int) - Method in class loci.formats.services.WlzServiceImpl

readBytes3DDomObj(byte[], int, int, int, int, int) - Method in class loci.formats.services.WlzServiceImpl

readByteToString(int) - Method in class loci.common.RandomAccessInputStream

Reads a byte array of the given length byte by byte.

readChannel(Element) - Method in class loci.formats.in.CellVoyagerReader

readChannelDefinitionBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the Channel Definition box

readChar() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readChar() - Method in class loci.common.ByteArrayHandle

readChar() - Method in class loci.common.FileHandle

readChar() - Method in class loci.common.NIOFileHandle

readChar() - Method in class loci.common.NIOInputStream

Read an input char.

readChar() - Method in class loci.common.RandomAccessInputStream

Read an input char.

readChar() - Method in class loci.common.StreamHandle

readChecked() - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer

Reads the next byte of data from this input stream.

readChunk() - Method in class loci.formats.in.AVIReader

readChunkHeader() - Method in class loci.formats.in.AVIReader

readCOC(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads the COC marker segment and realigns the codestream where the next marker should be found.

readCOD(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads a COD marker segment and realigns the codestream where the next marker should be found.

readColourSpecificationBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

Read the color specifications.

readCOM(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads a COM marker segments and realigns the bit stream at the point where the next marker segment should be found.

readComments(ImageInputStream, PNMMetadata) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Reads the comments.

readComponentMappingBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

Read the component mapping channel.

readCompoundArrayDataMap(String) - Method in interface loci.formats.services.JHDFService

Reads Compound array of any type

readCompoundArrayDataMap(String) - Method in class loci.formats.services.JHDFServiceImpl

readCompPosResLy(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads packets of the current tile according to the component-position-resolution-layer progressiveness.

readCompressedUnicode(int) - Method in class loci.poi.hssf.record.RecordInputStream

readContiguousCodeStreamBox(int, long) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method skips the Contiguous codestream box and adds position of contiguous codestream to a vector

readCRG(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads a CRG marker segment and checks its length.

readCString() - Method in class loci.common.NIOInputStream

Read a string of arbitrary length, terminated by a null char.

readCString() - Method in class loci.common.RandomAccessInputStream

Read a string of arbitrary length, terminated by a null char.

readCString() - Method in class loci.formats.in.OpenlabReader

readCString() - Method in class loci.formats.in.SlidebookReader

readData(String) - Static method in class loci.poi.util.HexRead

This method reads hex data from a filename and returns a byte array.

readData(String, String) - Static method in class loci.poi.util.HexRead

Same as readData(String) except that this method allows you to specify sections within a file.

readData(InputStream, int) - Static method in class loci.poi.util.HexRead

readDate() - Method in class loci.formats.in.OxfordInstrumentsReader

readDictionary(byte[], long, int, int) - Method in class loci.poi.hpsf.Property

Reads a dictionary.

readDouble() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readDouble() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readDouble() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Reads an IEEE double precision (i.e., 64 bit) floating-point number from the input.

readDouble() - Method in interface jj2000.j2k.io.BinaryDataInput

Should read an IEEE double precision (i.e., 64 bit) floating-point number from the input.

readDouble() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads an IEEE double precision (i.e., 64 bit) floating-point number from the input.

readDouble() - Method in class loci.common.ByteArrayHandle

readDouble() - Method in class loci.common.FileHandle

readDouble() - Method in class loci.common.NIOFileHandle

readDouble() - Method in class loci.common.NIOInputStream

Read eight bytes and return a double value.

readDouble() - Method in class loci.common.RandomAccessInputStream

Read eight bytes and return a double value.

readDouble() - Method in class loci.common.StreamHandle

readDouble() - Method in class loci.poi.hssf.record.RecordInputStream

readDoubleArray(int) - Method in class loci.formats.tools.AmiraParameters

readElement(int, int) - Method in class ome.metakit.ColumnMap

Read the value for this column at the given row index.

readEmbedded(int, BufferedImage, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Decodes the jpeg/png image embedded in the bitmap using any jpeg ImageIO-style plugin.

readEntry() - Method in class loci.formats.in.ZeissLSMReader

readEPHMarker(PktHeaderBitReader) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Try to read an EPH marker.

reader - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The ImageReader calling this TIFFDecompressor.

reader - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Cache the J2KImageReader which creates this object.

reader - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

Caches the RawImageReader which creates this object.

reader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

reader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

reader - Variable in class loci.formats.cache.CacheSource

Reader from which to draw image planes.

reader - Variable in class loci.formats.FileInfo

IFormatReader implementation that would be used to read this file.

reader - Variable in class loci.formats.gui.BufferedImageSource

Image reader from which to draw BufferedImages.

reader - Variable in class loci.formats.gui.DataConverter

reader - Variable in class loci.formats.gui.FormatFileFilter

Associated file format reader.

reader - Variable in class loci.formats.gui.PreviewPane

Reader for use when loading thumbnails.

reader - Variable in class loci.formats.in.AFIReader

reader - Variable in class loci.formats.in.BDReader

reader - Variable in class loci.formats.in.L2DReader

reader - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane

Reader to use for accessing this plane.

reader - Variable in class loci.formats.in.OperettaReader

reader - Variable in class loci.formats.in.PCORAWReader

reader - Variable in class loci.formats.in.ScanrReader

reader - Variable in class loci.formats.in.ZeissTIFFHandler

reader - Variable in class loci.formats.in.ZipReader

reader - Variable in class loci.formats.ReaderWrapper

FormatReader used to read the file.

reader - Variable in class loci.formats.services.MetakitServiceImpl

reader - Variable in class loci.plugins.config.FormatEntry

reader - Variable in class loci.plugins.in.ImportProcess

reader - Variable in class loci.plugins.util.BFVirtualStack

reader - Variable in class loci.plugins.util.ImageProcessorSource

Image reader from which to draw ImageProcessors.

reader - Static variable in class loci.tests.SingularityTest

READER - Static variable in class loci.tests.testng.Configuration

reader - Variable in class loci.tests.testng.FileHandleTest

reader - Variable in class loci.tests.testng.FormatReaderTest

Global shared jeader for use in all tests.

reader - Static variable in class loci.tests.testng.FormatWriterTest

Reader for input file.

reader - Variable in class loci.tests.testng.OpenBytesPerformanceTest

reader - Variable in class loci.tests.testng.SubResolutionTest

reader - Variable in class loci.tests.testng.TiffWriterTest

Reader

reader - Static variable in class loci.tests.ZipTester

readerClassName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

readerFromBytes(Class<IFormatReader>, byte[]) - Method in class loci.formats.Memoizer.RandomAccessDeser

readerName - Variable in class loci.plugins.config.FormatEntry

readers - Variable in class loci.formats.FileStitcher.ExternalSeries

readers - Variable in class loci.formats.ImageReader

List of supported file format readers.

readers - Variable in class loci.formats.in.ImprovisionTiffReader

readers - Variable in class loci.formats.in.MIASReader

Delegate readers.

readers - Variable in class loci.formats.in.NDPISReader

readers - Variable in class loci.formats.in.ScreenReader

readers - Variable in class loci.formats.in.SlidebookTiffReader

readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

ReaderWrapper - Class in loci.formats

Abstract superclass of reader logic that wraps other readers.

ReaderWrapper() - Constructor for class loci.formats.ReaderWrapper

Constructs a reader wrapper around a new image reader.

ReaderWrapper(IFormatReader) - Constructor for class loci.formats.ReaderWrapper

Constructs a reader wrapper around the given reader.

readExtraMetadata(MetadataStore) - Method in class loci.formats.in.KodakReader

readField(Element) - Method in class loci.formats.in.CellVoyagerReader

readFile(String) - Static method in class loci.common.DataTools

Reads the contents of the given file into a string.

readFile(String) - Method in class loci.formats.in.TextReader

readFile(String) - Method in class loci.formats.tools.AmiraParameters

readFile(RandomAccessInputStream) - Method in class loci.formats.tools.AmiraParameters

readFileFormat() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method checks whether the given RandomAccessIO is a valid JP2 file and if so finds the first codestream in the file.

readFileInfoMetadata(MetadataStore) - Method in class loci.formats.in.KodakReader

readFileTypeBox(int, long) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the File Type box

readFilter(DataInputStream, int[]) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads a wavelet filter from the codestream and returns the filter object that implements it.

readFloat() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readFloat() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readFloat() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Reads an IEEE single precision (i.e., 32 bit) floating-point number from the input.

readFloat() - Method in interface jj2000.j2k.io.BinaryDataInput

Should read an IEEE single precision (i.e., 32 bit) floating-point number from the input.

readFloat() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads an IEEE single precision (i.e., 32 bit) floating-point number from the input.

readFloat() - Method in class loci.common.ByteArrayHandle

readFloat() - Method in class loci.common.FileHandle

readFloat() - Method in class loci.common.NIOFileHandle

readFloat() - Method in class loci.common.NIOInputStream

Read four bytes and return a float value.

readFloat() - Method in class loci.common.RandomAccessInputStream

Read four bytes and return a float value.

readFloat() - Method in class loci.common.StreamHandle

readFooter() - Method in class ome.metakit.MetakitReader

Read the footer data for the current database file.

readFoundMainMarkSeg() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Retrieves and reads all marker segments found in the main header during the first pass.

readFoundTilePartMarkSeg(int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the DecoderSpecs instance filled when reading the headers Retrieves and reads all marker segments previously found in the tile-part header.

readFrameInterval(Document) - Method in class loci.formats.in.CellVoyagerReader

readFromBytes(byte[]) - Method in class loci.poi.util.ByteField

set the value from its offset into an array of bytes

readFromBytes(byte[]) - Method in interface loci.poi.util.FixedField

set the value from its offset into an array of bytes

readFromBytes(byte[]) - Method in class loci.poi.util.IntegerField

set the value from its offset into an array of bytes

readFromBytes(byte[]) - Method in class loci.poi.util.LongField

set the value from its offset into an array of bytes

readFromBytes(byte[]) - Method in class loci.poi.util.ShortField

set the value from its offset into an array of bytes

readFromOverlays() - Static method in class loci.plugins.util.ROIHandler

Returns rois if any from the overlay.

readFromRoiManager() - Static method in class loci.plugins.util.ROIHandler

Returns the rois if any stored in the ROI manager.

readFromStream(InputStream) - Method in class loci.poi.util.ByteField

set the value from an InputStream

readFromStream(InputStream) - Method in interface loci.poi.util.FixedField

set the value from an InputStream

readFromStream(InputStream) - Method in class loci.poi.util.IntegerField

set the value from an InputStream

readFromStream(InputStream, int) - Static method in class loci.poi.util.LittleEndian

Read the appropriate number of bytes from the stream and return them to the caller.

readFromStream(InputStream) - Method in class loci.poi.util.LongField

set the value from an InputStream

readFromStream(InputStream) - Method in class loci.poi.util.ShortField

set the value from an InputStream

readFromString(String) - Static method in class loci.poi.util.HexRead

readFully(char[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

readFully(short[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

readFully(int[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

readFully(long[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

readFully(float[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

readFully(double[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

readFully(char[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

readFully(short[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

readFully(int[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

readFully(long[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

readFully(float[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

readFully(double[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

readFully(byte[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readFully(byte[]) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readFully(short[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readFully(char[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readFully(int[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readFully(long[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readFully(float[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readFully(double[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

readFully(byte[], int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readFully(byte[], int, int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Reads up to len bytes of data from this file into an array of bytes.

readFully(byte[], int, int) - Method in interface jj2000.j2k.io.RandomAccessIO

Reads up to len bytes of data from this file into an array of bytes.

readFully(byte[], int, int) - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads 'len' bytes of data from this file into an array of bytes.

readFully(byte[]) - Method in class loci.common.ByteArrayHandle

readFully(byte[], int, int) - Method in class loci.common.ByteArrayHandle

readFully(byte[]) - Method in class loci.common.FileHandle

readFully(byte[], int, int) - Method in class loci.common.FileHandle

readFully(byte[]) - Method in class loci.common.NIOFileHandle

readFully(byte[], int, int) - Method in class loci.common.NIOFileHandle

readFully(byte[]) - Method in class loci.common.NIOInputStream

Read bytes from the stream into the given array.

readFully(byte[], int, int) - Method in class loci.common.NIOInputStream

Read n bytes from the stream into the given array at the specified offset.

readFully(byte[]) - Method in class loci.common.RandomAccessInputStream

Read bytes from the stream into the given array.

readFully(byte[], int, int) - Method in class loci.common.RandomAccessInputStream

Read n bytes from the stream into the given array at the specified offset.

readFully(byte[]) - Method in class loci.common.StreamHandle

readFully(byte[], int, int) - Method in class loci.common.StreamHandle

readFully(InputStream, byte[]) - Static method in class loci.poi.util.IOUtils

Helper method, just calls readFully(in, b, 0, b.length)

readFully(InputStream, byte[], int, int) - Static method in class loci.poi.util.IOUtils

Same as the normal in.read(b, off, len), but tries to ensure that the entire len number of bytes is read.

readHeader() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

readHeader() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

readHeader() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

readHeader() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

readHeader() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

readHeader() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

readHeader(byte[], int) - Static method in class loci.poi.ddf.EscherRecord.EscherRecordHeader

readHeader(byte[], int) - Method in class loci.poi.ddf.EscherRecord

Reads the 8 byte header information and populates the options and recordId records.

readHeaderInt() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns an int read from the header of the PGM file.

readIFD(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

readImage(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

readImage(long) - Method in class loci.formats.in.MNGReader

readImage(InputStream, JPEG2000CodecOptions) - Method in interface loci.formats.services.JAIIIOService

Reads an image using JAI Image I/O using the JPEG 2000 codec.

readImage(InputStream) - Method in interface loci.formats.services.JAIIIOService

Reads an image using JAI Image I/O using the JPEG 2000 codec.

readImage(InputStream, JPEG2000CodecOptions) - Method in class loci.formats.services.JAIIIOServiceImpl

readImage(InputStream) - Method in class loci.formats.services.JAIIIOServiceImpl

readImage(int, boolean) - Method in class loci.plugins.in.ImagePlusReader

readImageBlock() - Method in class loci.formats.in.GIFReader

readImageHeader(int) - Method in class loci.formats.in.PictReader

readImageHeaderBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the Image Header box

readImagePlaneBuf(byte[], int, int, int, int, int) - Method in class loci.formats.in.SlideBook6Reader

readImages() - Method in class loci.plugins.in.ImagePlusReader

readImages(boolean) - Method in class loci.plugins.in.ImagePlusReader

readInfo(Document, Document) - Method in class loci.formats.in.CellVoyagerReader

ReadingNotSupportedException - Exception in loci.poi.hpsf

This exception is thrown when HPSF tries to read a (yet) unsupported variant type.

ReadingNotSupportedException(long, Object) - Constructor for exception loci.poi.hpsf.ReadingNotSupportedException

Constructor

readInput() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads data from the wrapped InputStream and places it in the cache buffer.

readInt() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readInt() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readInt() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Reads a signed int (i.e., 32 bit) from the input.

readInt() - Method in interface jj2000.j2k.io.BinaryDataInput

Should read a signed int (i.e., 32 bit) from the input.

readInt() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads a signed int (32 bit) from the input.

readInt() - Method in class loci.common.ByteArrayHandle

readInt() - Method in class loci.common.FileHandle

readInt() - Method in class loci.common.NIOFileHandle

readInt() - Method in class loci.common.NIOInputStream

Read four input bytes and return an int value.

readInt() - Method in class loci.common.RandomAccessInputStream

Read four input bytes and return an int value.

readInt() - Method in class loci.common.StreamHandle

readInt() - Method in class loci.poi.hssf.record.RecordInputStream

readInt(InputStream) - Static method in class loci.poi.util.LittleEndian

get an int value from an InputStream

readIntArray(String) - Method in interface loci.formats.services.JHDFService

Reads a multi-dimensional int array from path.

readIntArray(String) - Method in class loci.formats.services.JHDFServiceImpl

readIntArray() - Method in class loci.formats.tools.AmiraParameters

readIntArray(int) - Method in class loci.formats.tools.AmiraParameters

readIntBlockArray(String, int[], int[]) - Method in interface loci.formats.services.JHDFService

Reads a multi-dimensional sub-block int array from path.

readIntBlockArray(String, int[], int[]) - Method in class loci.formats.services.JHDFServiceImpl

readInteger(ImageInputStream) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Reads the next integer.

readIntPropertyBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the contents of the Intellectual property box

readJP2HeaderBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the JP2Header box

readKey() - Method in class loci.formats.tools.AmiraParameters

readLine() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readLine() - Method in class loci.common.ByteArrayHandle

readLine() - Method in class loci.common.FileHandle

readLine(BufferedReader, StringBuffer) - Method in class loci.common.IniParser

Reads (at least) one line from the given input stream into the specified string buffer.

readLine() - Method in class loci.common.NIOFileHandle

readLine() - Method in class loci.common.NIOInputStream

Read the next line of text from the input stream.

readLine() - Method in class loci.common.RandomAccessInputStream

Read the next line of text from the input stream.

readLine() - Method in class loci.common.StreamHandle

readLine() - Method in class loci.formats.in.EPSReader

readLong() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readLong() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readLong() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Reads a signed long (i.e., 64 bit) from the input.

readLong() - Method in interface jj2000.j2k.io.BinaryDataInput

Should read a signed long (i.e., 64 bit) from the input.

readLong() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads a signed long (64 bit) from the input.

readLong() - Method in class loci.common.ByteArrayHandle

readLong() - Method in class loci.common.FileHandle

readLong() - Method in class loci.common.NIOFileHandle

readLong() - Method in class loci.common.NIOInputStream

Read eight input bytes and return a long value.

readLong() - Method in class loci.common.RandomAccessInputStream

Read eight input bytes and return a long value.

readLong() - Method in class loci.common.StreamHandle

readLong() - Method in class loci.poi.hssf.record.RecordInputStream

readLong(InputStream) - Static method in class loci.poi.util.LittleEndian

get a long value from an InputStream

readLookupTables(RandomAccessInputStream) - Method in class loci.formats.in.BioRadReader

Read all lookup tables from the given file into the 'lut' variable.

readLut(int) - Method in class loci.formats.in.GIFReader

Read a color lookup table of the specified size.

readLyResCompPos(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads packets of the current tile according to the layer-resolution-component-position progressiveness.

readMap() - Method in class loci.formats.tools.AmiraParameters

readMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

readMetaData(String) - Method in class loci.formats.in.BDReader

readMetadataFile() - Method in class loci.formats.in.OMETiffReader

Extracts the OME-XML from the current OMETiffReader.metadataFile.

readMultiByteInteger(ImageInputStream) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

readNewBuffer(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Reads a new buffer from the file.

readNotes(RandomAccessInputStream, boolean) - Method in class loci.formats.in.BioRadReader

Read all of the note strings from the given file.

readNumber() - Method in class loci.formats.tools.AmiraParameters

readNumberArray() - Method in class loci.formats.tools.AmiraParameters

readNumberString() - Method in class loci.formats.in.AmiraReader.ASCII

READOUT_TIME - Static variable in class loci.formats.in.FluoviewReader

readOutRate - Variable in class loci.formats.in.MetamorphHandler

readOutRate - Variable in class ome.xml.model.DetectorSettings

readoutTime - Variable in class loci.formats.in.FluoviewReader

readPaletteBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the content of the palette box

readPixelData() - Method in class loci.formats.in.ZeissCZIReader.SubBlock

readPixelData(RandomAccessInputStream) - Method in class loci.formats.in.ZeissCZIReader.SubBlock

readPixels(byte[], RandomAccessInputStream, ZipInputStream, int) - Method in class loci.formats.in.SDTReader

readPixels(ImagePlusReader, ImporterOptions, DisplayHandler) - Method in class loci.plugins.in.Importer

readPktBody(int, int, int, int, CBlkInfo[][][], int[]) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Reads specificied packet body in order to find offset of each code-block's piece of codeword.

readPktHead(int, int, int, int, CBlkInfo[][][], int[]) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Read specified packet head and found length of each code-block's piece of codewords as well as number of skipped most significant bit-planes.

readPlane(RandomAccessInputStream, int, int, int, int, byte[]) - Method in class loci.formats.FormatReader

Reads a raw plane from disk.

readPlane(RandomAccessInputStream, int, int, int, int, int, byte[]) - Method in class loci.formats.FormatReader

Reads a raw plane from disk.

readPlaneData() - Method in class loci.formats.in.MetamorphReader

readPlanes(ImportProcess, int, List<LUT>, boolean) - Method in class loci.plugins.in.ImagePlusReader

readPLM(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads PLM marker segment and realigns the codestream where the next marker should be found.

readPLTFields(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads the PLT fields and realigns the codestream where the next marker should be found.

readPOC(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads the POC marker segment and realigns the codestream where the next marker should be found.

readPosCompResLy(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads packets of the current tile according to the position-component-resolution-layer progressiveness.

readPPM(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads the PPM marker segment of the main header.

readPPT(DataInputStream, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Teads the PPT marker segment of the main header.

readProcessors(ImportProcess, int, Region, boolean) - Method in class loci.plugins.in.ImagePlusReader

HACK: This method mainly exists to prompt the user for a missing LuraWave license code, in the case of LWF-compressed Flex.

readProperties() - Method in class loci.poi.POIDocument

Find, and create objects for, the standard Documment Information Properties (HPSF)

readPString(RandomAccessInputStream) - Static method in class ome.metakit.MetakitTools

Read a Pascal-style string from the given RandomAccessInputStream.

readQCC(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads a QCC marker segment and realigns the codestream at the point where the next marker should be found.

readQCD(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads a QCD marker segment and realigns the codestream at the point where the next marker should be found.

readQuotedString() - Method in class loci.formats.tools.AmiraParameters

readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

readRaster(InputStream, JPEG2000CodecOptions) - Method in interface loci.formats.services.JAIIIOService

Reads an image into a raster using JAI Image I/O using the JPEG 2000 codec.

readRaster(InputStream) - Method in interface loci.formats.services.JAIIIOService

Reads an image into a raster using JAI Image I/O using the JPEG 2000 codec.

readRaster(InputStream, JPEG2000CodecOptions) - Method in class loci.formats.services.JAIIIOServiceImpl

readRaster(InputStream) - Method in class loci.formats.services.JAIIIOServiceImpl

readRational(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphReader

readRational(RandomAccessInputStream, long) - Method in class loci.formats.in.MetamorphReader

readRationals(String[]) - Method in class loci.formats.in.MetamorphReader

readRemainder() - Method in class loci.poi.hssf.record.RecordInputStream

Returns the remaining bytes for the current record.

readResLyCompPos(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads packets of the current tile according to the resolution-layer-component-position progressiveness.

readResolutionBox(int, int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

Read the resolution.

readResPosCompLy(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads packets of the current tile according to the resolution-position-component-layer progressiveness.

readRGN(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads the RGN marker segment of the codestream header.

readRLE4(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

readRLE8(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

readScanLine(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

readSegment(String) - Method in class loci.formats.in.ZeissCZIReader

readSegments(String) - Method in class loci.formats.in.ZeissCZIReader

readShort() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readShort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readShort() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Reads a signed short (i.e., 16 bit) from the input.

readShort() - Method in interface jj2000.j2k.io.BinaryDataInput

Should read a signed short (i.e., 16 bit) from the input.

readShort() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads a signed short (16 bit) from the input.

readShort() - Method in class loci.common.ByteArrayHandle

readShort() - Method in class loci.common.FileHandle

readShort() - Method in class loci.common.NIOFileHandle

readShort() - Method in class loci.common.NIOInputStream

Read two input bytes and return a short value.

readShort() - Method in class loci.common.RandomAccessInputStream

Read two input bytes and return a short value.

readShort() - Method in class loci.common.StreamHandle

readShort() - Method in class loci.poi.hssf.record.RecordInputStream

readShort(InputStream) - Static method in class loci.poi.util.LittleEndian

get a short value from an InputStream

readShortArray() - Method in class loci.poi.hssf.record.RecordInputStream

readShortBlockArray(String, int[], int[]) - Method in interface loci.formats.services.JHDFService

Reads a multi-dimensional sub-block short array from path.

readShortBlockArray(String, int[], int[]) - Method in class loci.formats.services.JHDFServiceImpl

readSIZ(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads the SIZ marker segment and realigns the codestream at the point where the next marker segment should be found.

readSOPMarker(int[], int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Try to read a SOP marker and check that its sequence number if not out of sequence.

readStackHeader() - Method in class loci.formats.in.ImspectorReader

Read the header for an image stack.

readStageLabels() - Method in class loci.formats.in.MetamorphReader

readStagePositions() - Method in class loci.formats.in.MetamorphReader

readStamps() - Method in class loci.formats.in.FluoviewReader

readState - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

The J2KReadState for this reading session based on the current input and J2KImageReadParam.

readState - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

readStream - Variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream

An ImageInputStream used for reading.

readString(String) - Method in class loci.common.NIOInputStream

Reads a string ending with one of the characters in the given string.

readString(int) - Method in class loci.common.NIOInputStream

Read a string of length n.

readString(String) - Method in class loci.common.RandomAccessInputStream

Reads a string ending with one of the characters in the given string.

readString(int) - Method in class loci.common.RandomAccessInputStream

Read a string of up to length n.

readString() - Method in class loci.formats.in.OBFReader

readStringArray(String) - Method in interface loci.formats.services.JHDFService

Reads String array array from path.

readStringArray(String) - Method in class loci.formats.services.JHDFServiceImpl

readSubsampledRaster(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

readSubsampledRaster(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

readSupportsThumbnails() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

readTagHeader() - Method in class loci.formats.in.OpenlabReader

Read the next tag.

readTags(RandomAccessInputStream, boolean, String) - Method in class loci.formats.in.CellSensReader

readThumbImages() - Method in class loci.plugins.in.ImagePlusReader

readTiffIFDEntry() - Method in class loci.formats.tiff.TiffParser

readTile(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

readTilePartHeader() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads SOT marker segment of the tile-part header and calls related methods of the HeaderDecoder to read other markers segments.

readTilePkts(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Finish initialization of members for specified tile, reads packets head of each tile and keeps location of each code-block's codewords.

readTimePoints(Document) - Method in class loci.formats.in.CellVoyagerReader

readTLM(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Reads TLM marker segment and realigns the codestream where the next marker should be found.

readTOC() - Method in class ome.metakit.MetakitReader

Reads the table of contents (TOC) for the current database file.

readToEOL(InputStream) - Static method in class loci.poi.util.HexRead

readTokenValues(RecordInputStream) - Method in class loci.poi.hssf.record.formula.ArrayPtg

Read in the actual token (array) values.

readTopLevel() - Method in class loci.formats.tools.AmiraParameters

readTypeAndSize() - Method in class loci.formats.in.AVIReader

readUnicodeLEString(int) - Method in class loci.poi.hssf.record.RecordInputStream

given a byte array of 16-bit unicode characters, compress to 8-bit and return a string { 0x16, 0x00 } -0x16

readUnicodeString() - Method in class loci.poi.hssf.record.RecordInputStream

Returns an excel style unicode string from the bytes reminaing in the record.

readUnsignedByte() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readUnsignedByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readUnsignedByte() - Method in interface jj2000.j2k.io.BinaryDataInput

Should read an unsigned byte (i.e., 8 bit) from the input.

readUnsignedByte() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Reads an unsigned byte (i.e., 8 bit) from the input.

readUnsignedByte() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads an unsigned byte (8 bit) from the input.

readUnsignedByte() - Method in class loci.common.ByteArrayHandle

readUnsignedByte() - Method in class loci.common.FileHandle

readUnsignedByte() - Method in class loci.common.NIOFileHandle

readUnsignedByte() - Method in class loci.common.NIOInputStream

Read an input byte and zero extend it appropriately.

readUnsignedByte() - Method in class loci.common.RandomAccessInputStream

Read an input byte and zero extend it appropriately.

readUnsignedByte() - Method in class loci.common.StreamHandle

readUnsignedInt() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readUnsignedInt() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readUnsignedInt() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Reads an unsigned int (i.e., 32 bit) from the input.

readUnsignedInt() - Method in interface jj2000.j2k.io.BinaryDataInput

Should read an unsigned int (i.e., 32 bit) from the input.

readUnsignedInt() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads a unsigned int (32 bit) from the input.

readUnsignedLong(RandomAccessInputStream) - Method in class loci.formats.in.SDTInfo

readUnsignedShort() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readUnsignedShort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

readUnsignedShort() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Reads an unsigned short (i.e., 16 bit) from the input.

readUnsignedShort() - Method in interface jj2000.j2k.io.BinaryDataInput

Should read an unsigned short (i.e., 16 bit) from the input.

readUnsignedShort() - Method in class jj2000.j2k.util.ISRandomAccessIO

Reads an unsigned short (16 bit) from the input.

readUnsignedShort() - Method in class loci.common.ByteArrayHandle

readUnsignedShort() - Method in class loci.common.FileHandle

readUnsignedShort() - Method in class loci.common.NIOFileHandle

readUnsignedShort() - Method in class loci.common.NIOInputStream

Read two bytes and return an int in the range 0 through 65535.

readUnsignedShort() - Method in class loci.common.RandomAccessInputStream

Read two bytes and return an int in the range 0 through 65535.

readUnsignedShort() - Method in class loci.common.StreamHandle

readURLBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the contents of the XML box

readUShort() - Method in class loci.poi.hssf.record.RecordInputStream

readUTF() - Method in class com.sun.media.imageio.stream.RawImageInputStream

readUTF() - Method in class loci.common.ByteArrayHandle

readUTF() - Method in class loci.common.FileHandle

readUTF() - Method in class loci.common.NIOFileHandle

readUTF() - Method in class loci.common.NIOInputStream

Read a string that has been encoded using a modified UTF-8 format.

readUTF() - Method in class loci.common.RandomAccessInputStream

Read a string that has been encoded using a modified UTF-8 format.

readUTF() - Method in class loci.common.StreamHandle

readUUIDBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the contents of the Intellectual property box

readUUIDListBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the contents of the UUID List box

readValue(int) - Method in class loci.formats.in.GatanReader

readValue() - Method in class loci.formats.in.ZeissLSMReader

readVariable() - Method in class loci.formats.in.OpenlabReader

readVariable() - Method in class loci.formats.in.QuesantReader

readWavelength(int, MetadataStore) - Method in class loci.formats.in.DeltavisionReader

readWellInfo(Element, double, double, int, int) - Method in class loci.formats.in.CellVoyagerReader

readXMLBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method reads the contents of the XML box

Reagent - Class in ome.xml.model

Reagent() - Constructor for class ome.xml.model.Reagent

Default constructor.

Reagent(Element, OMEModel) - Constructor for class ome.xml.model.Reagent

Constructs Reagent recursively from an XML DOM tree.

Reagent(Reagent) - Constructor for class ome.xml.model.Reagent

Copy constructor.

reagent - Variable in class ome.xml.model.Well

reagentIdentifier - Variable in class ome.xml.model.Reagent

reagentLinks - Variable in class ome.xml.model.Annotation

ReagentRef - Class in ome.xml.model

ReagentRef() - Constructor for class ome.xml.model.ReagentRef

Default constructor.

ReagentRef(Element, OMEModel) - Constructor for class ome.xml.model.ReagentRef

Constructs ReagentRef recursively from an XML DOM tree.

ReagentRef(ReagentRef) - Constructor for class ome.xml.model.ReagentRef

Copy constructor.

reagents - Variable in class ome.xml.model.Screen

reagentSetDescription - Variable in class ome.xml.model.Screen

reagentSetIdentifier - Variable in class ome.xml.model.Screen

realChannel - Variable in class loci.formats.in.LIFReader

realColors - Variable in class loci.formats.in.ND2Handler

realFile - Variable in class loci.formats.Memoizer

realHeight - Variable in class loci.formats.in.BaseZeissReader

realWidth - Variable in class loci.formats.in.BaseZeissReader

reason - Variable in exception loci.poi.hpsf.HPSFException

The underlying reason for this exception - may be null.

reason - Variable in exception loci.poi.hpsf.HPSFRuntimeException

The underlying reason for this exception - may be null.

reason - Variable in exception loci.poi.hssf.eventusermodel.HSSFUserException

rebuild(GenericDialog) - Method in class loci.plugins.in.FilePatternDialog

rebuildDialog(GenericDialog) - Method in class loci.plugins.in.MainDialog

Fancies up the importer dialog to look much nicer.

rebuildDialog(GenericDialog, int) - Method in class loci.plugins.in.SeriesDialog

REC_BOOLEAN - Static variable in class loci.formats.in.IM3Reader

REC_CONTAINER - Static variable in class loci.formats.in.IM3Reader

A record that is a container of other records.

REC_FLOAT - Static variable in class loci.formats.in.IM3Reader

REC_IMAGE - Static variable in class loci.formats.in.IM3Reader

Image format int: pixel type? 3 = RGBA int: width int: height int: depth data bytes follow

REC_INT - Static variable in class loci.formats.in.IM3Reader

32-bit integer values

REC_NESTED - Static variable in class loci.formats.in.IM3Reader

A nested record of records

REC_STRING - Static variable in class loci.formats.in.IM3Reader

A string int: ? int: length 8-byte characters follow

REC_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

recache(int) - Method in class loci.formats.cache.Cache

Updates the given plane.

recache() - Method in class loci.formats.cache.Cache

Updates all planes on the load list.

RecalcIdRecord - Class in loci.poi.hssf.record

Title: Recalc Id Record

RecalcIdRecord() - Constructor for class loci.poi.hssf.record.RecalcIdRecord

RecalcIdRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.RecalcIdRecord

Constructs a RECALCID record and sets its fields appropriately.

recalcRowGutter() - Method in class loci.poi.hssf.model.Sheet

recalcTreeV() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Recalculates the values of the elements in the tag tree, in levels 1 and up, based on the values of the leafs (level 0).

reconstructedComps - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

block storing the reconstructed image for each component

record - Variable in class loci.plugins.util.BFVirtualStack

record(String) - Method in class loci.plugins.util.RecordedImageProcessor

record(String, Object, Class<?>) - Method in class loci.plugins.util.RecordedImageProcessor

record(String, Object[], Class<?>[]) - Method in class loci.plugins.util.RecordedImageProcessor

record - Variable in class loci.poi.hssf.dev.BiffViewer.RecordDetails

Record - Class in loci.poi.hssf.record

Title: Record Description: All HSSF Records inherit from this class.

Record() - Constructor for class loci.poi.hssf.record.Record

instantiates a blank record strictly for ID matching

Record(RecordInputStream) - Constructor for class loci.poi.hssf.record.Record

Constructor Record

record - Variable in class loci.poi.hssf.usermodel.HSSFCell

record - Variable in class loci.poi.hssf.usermodel.HSSFObjectData

Underlying object record ultimately containing a reference to the object.

record - Variable in class loci.poi.hssf.usermodel.HSSFRichTextString

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherBlipRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherBlipWMFRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherBSERecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherChildAnchorRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherClientAnchorRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherClientDataRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherDggRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherDgRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherOptRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherSpgrRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherSpRecord

RECORD_DESCRIPTION - Static variable in class loci.poi.ddf.EscherTextboxRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherBSERecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherChildAnchorRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherClientAnchorRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherClientDataRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherDggRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherDgRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherOptRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherSpgrRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherSpRecord

RECORD_ID - Static variable in class loci.poi.ddf.EscherTextboxRecord

RECORD_ID_DIB - Static variable in class loci.poi.ddf.EscherBitmapBlip

RECORD_ID_EMF - Static variable in class loci.poi.ddf.EscherMetafileBlip

RECORD_ID_EMF - Static variable in class loci.poi.ddf.EscherPictBlip

RECORD_ID_END - Static variable in class loci.poi.ddf.EscherBlipRecord

RECORD_ID_JPEG - Static variable in class loci.poi.ddf.EscherBitmapBlip

RECORD_ID_PICT - Static variable in class loci.poi.ddf.EscherMetafileBlip

RECORD_ID_PICT - Static variable in class loci.poi.ddf.EscherPictBlip

RECORD_ID_PNG - Static variable in class loci.poi.ddf.EscherBitmapBlip

RECORD_ID_START - Static variable in class loci.poi.ddf.EscherBlipRecord

RECORD_ID_WMF - Static variable in class loci.poi.ddf.EscherMetafileBlip

RECORD_ID_WMF - Static variable in class loci.poi.ddf.EscherPictBlip

recordData - Variable in class loci.poi.hssf.record.DrawingRecord

RecordedImageProcessor - Class in loci.plugins.util

Image processor extension that records commands executed upon it.

RecordedImageProcessor(ImageProcessor) - Constructor for class loci.plugins.util.RecordedImageProcessor

RecordedImageProcessor(ImageProcessor, int, ImageProcessor[]) - Constructor for class loci.plugins.util.RecordedImageProcessor

RecordedImageProcessor.MethodEntry - Class in loci.plugins.util

RecordedImageProcessor.MethodEntry() - Constructor for class loci.plugins.util.RecordedImageProcessor.MethodEntry

RecordFactory - Class in loci.poi.hssf.record

Deprecated.

use EventRecordFactory instead

RecordFactory() - Constructor for class loci.poi.hssf.record.RecordFactory

Deprecated.

RecordFormatException - Exception in loci.poi.hssf.record

Title: Record Format Exception Description: Used by records to indicate invalid format/data.

RecordFormatException(String) - Constructor for exception loci.poi.hssf.record.RecordFormatException

RecordFormatException(String, Throwable) - Constructor for exception loci.poi.hssf.record.RecordFormatException

RecordFormatException(Throwable) - Constructor for exception loci.poi.hssf.record.RecordFormatException

RecordGenerator - Class in loci.poi.dev

Description of the Class

RecordGenerator() - Constructor for class loci.poi.dev.RecordGenerator

recordId - Variable in class loci.poi.ddf.EscherRecord.EscherRecordHeader

recordId - Variable in class loci.poi.ddf.EscherRecord

RECORDING_CAMERA_BINNING - Static variable in class loci.formats.in.ZeissLSMReader

RECORDING_DESCRIPTION - Static variable in class loci.formats.in.ZeissLSMReader

RECORDING_NAME - Static variable in class loci.formats.in.ZeissLSMReader

Data types.

RECORDING_OBJECTIVE - Static variable in class loci.formats.in.ZeissLSMReader

RECORDING_SAMPLE_0TIME - Static variable in class loci.formats.in.ZeissLSMReader

RECORDING_ZOOM - Static variable in class loci.formats.in.ZeissLSMReader

RecordInputStream - Class in loci.poi.hssf.record

Title: Record Input Stream

RecordInputStream(InputStream) - Constructor for class loci.poi.hssf.record.RecordInputStream

recordOffset - Variable in class loci.poi.hssf.record.RecordInputStream

RecordProcessor - Class in loci.poi.hssf.record

Process a single record.

RecordProcessor() - Constructor for class loci.poi.hssf.record.RecordProcessor

records - Variable in class loci.formats.in.IM3Reader

records - Static variable in class loci.poi.hssf.eventmodel.EventRecordFactory

contains the classes for all the records we want to parse.

records - Variable in class loci.poi.hssf.eventusermodel.HSSFRequest

records - Variable in class loci.poi.hssf.model.Sheet

records - Variable in class loci.poi.hssf.model.Workbook

this contains the Worksheet record objects

records - Variable in class loci.poi.hssf.model.WorkbookRecordList

records - Variable in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

records - Variable in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

records - Variable in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

records - Static variable in class loci.poi.hssf.record.RecordFactory

Deprecated.

recordSize - Variable in class loci.poi.hssf.record.UnicodeString.UnicodeRecordStats

recordsMap - Static variable in class loci.poi.ddf.DefaultEscherRecordFactory

recordsMap - Static variable in class loci.poi.hssf.eventmodel.EventRecordFactory

cache of the recordsToMap();

recordsMap - Static variable in class loci.poi.hssf.record.RecordFactory

Deprecated.

recordsToMap(Class[]) - Static method in class loci.poi.ddf.DefaultEscherRecordFactory

Converts from a list of classes into a map that contains the record id as the key and the Constructor in the value part of the map.

recordsToMap(Class[]) - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory

gets the record constructors and sticks them in the map by SID

recordsToMap(Class[]) - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

recordWidth - Variable in class loci.formats.in.PDSReader

recsize - Variable in class loci.poi.hssf.dev.BiffViewer.RecordDetails

rect - Variable in class jj2000.j2k.roi.encoder.ROI

Flag indicating whether the ROI is rectangular or not

RECTANGLE - Static variable in class loci.formats.in.FV1000Reader

RECTANGLE - Static variable in class loci.formats.in.LeicaHandler.ROI

RECTANGLE - Static variable in class loci.formats.in.LIFReader.ROI

RECTANGLE - Static variable in class loci.formats.in.ZeissLSMReader

Rectangle - Class in ome.xml.model

Rectangle() - Constructor for class ome.xml.model.Rectangle

Default constructor.

Rectangle(Element, OMEModel) - Constructor for class ome.xml.model.Rectangle

Constructs Rectangle recursively from an XML DOM tree.

Rectangle(Rectangle) - Constructor for class ome.xml.model.Rectangle

Copy constructor.

RectangleStrategy - Class in loci.formats.cache

A rectangle strategy caches planes extending from the the current dimensional position along each axis and combination of axes.

RectangleStrategy(int[]) - Constructor for class loci.formats.cache.RectangleStrategy

Constructs a rectangle strategy.

RectROIMaskGenerator - Class in jj2000.j2k.roi.encoder

This class generates the ROI masks when there are only rectangular ROIs in the image.

RectROIMaskGenerator(ROI[], int) - Constructor for class jj2000.j2k.roi.encoder.RectROIMaskGenerator

The constructor of the mask generator.

rectype - Variable in class loci.poi.hssf.dev.BiffViewer.RecordDetails

recvDecodingTables() - Method in class loci.common.CBZip2InputStream

recvDecodingTablesPos - Variable in class loci.common.CBZip2InputStream.Data

red - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

red - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

red - Variable in class loci.poi.hssf.record.PColor

red - Variable in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

RED_GAIN - Static variable in class loci.formats.in.CellSensReader

RED_MAX - Static variable in class loci.plugins.in.Colorizer

RED_OFFSET - Static variable in class loci.formats.in.CellSensReader

redBlueNotSwappedFlag - Variable in class ome.jxr.parser.DatastreamParser

redGain - Variable in class loci.formats.in.CellSensReader.Pyramid

redMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

redMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

redOffset - Variable in class loci.formats.in.CellSensReader.Pyramid

redOffset - Static variable in class org.libjpegturbo.turbojpeg.TJ

redShort - Variable in class loci.formats.gui.Index16ColorModel

Lookup tables.

reduce() - Method in class loci.formats.tiff.TiffRational

Reduces this rational's fraction to lowest terms.

reduceList - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

reduceTree() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

redX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

redY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

redZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

Ref3DPtg - Class in loci.poi.hssf.record.formula

Title: Reference 3D Ptg

Ref3DPtg() - Constructor for class loci.poi.hssf.record.formula.Ref3DPtg

Creates new AreaPtg

Ref3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.Ref3DPtg

Ref3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.Ref3DPtg

RefAPtg - Class in loci.poi.hssf.record.formula

RefNAPtg

RefAPtg() - Constructor for class loci.poi.hssf.record.formula.RefAPtg

RefAPtg(short, short, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.RefAPtg

RefAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.RefAPtg

refCount - Variable in class loci.plugins.util.VirtualReader

Reference - Class in ome.xml.model

Reference() - Constructor for class ome.xml.model.Reference

Default constructor.

Reference(Element, OMEModel) - Constructor for class ome.xml.model.Reference

Constructs Reference recursively from an XML DOM tree.

Reference(Reference) - Constructor for class ome.xml.model.Reference

Copy constructor.

REFERENCE_BLACK_WHITE - Static variable in class loci.formats.tiff.IFD

REFERENCE_TYPE_DEFAULT_CATEGORIES - Static variable in class loci.poi.hssf.record.LinkedDataRecord

REFERENCE_TYPE_DIRECT - Static variable in class loci.poi.hssf.record.LinkedDataRecord

REFERENCE_TYPE_ERROR_REPORTED - Static variable in class loci.poi.hssf.record.LinkedDataRecord

REFERENCE_TYPE_NOT_USED - Static variable in class loci.poi.hssf.record.LinkedDataRecord

REFERENCE_TYPE_WORKSHEET - Static variable in class loci.poi.hssf.record.LinkedDataRecord

referenceBlackCb - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

referenceBlackCb - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

referenceBlackCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

referenceBlackCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

referenceBlackY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

referenceBlackY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

REFERENCEFRAME - Static variable in class ome.units.UNITS

ReferenceList<T> - Class in ome.xml.model

ReferenceList() - Constructor for class ome.xml.model.ReferenceList

ReferenceList(Collection<? extends T>) - Constructor for class ome.xml.model.ReferenceList

ReferencePtg - Class in loci.poi.hssf.record.formula

ReferencePtg - handles references (such as A1, A2, IA4)

ReferencePtg() - Constructor for class loci.poi.hssf.record.formula.ReferencePtg

ReferencePtg(String) - Constructor for class loci.poi.hssf.record.formula.ReferencePtg

Takes in a String represnetation of a cell reference and fills out the numeric fields.

ReferencePtg(short, short, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.ReferencePtg

ReferencePtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ReferencePtg

Creates new ValueReferencePtg

references - Variable in class ome.xml.model.OMEModelImpl

referenceWhiteCb - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

referenceWhiteCb - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

referenceWhiteCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

referenceWhiteCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

referenceWhiteY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

referenceWhiteY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

RefErrorPtg - Class in loci.poi.hssf.record.formula

RefError - handles deleted cell reference

RefErrorPtg() - Constructor for class loci.poi.hssf.record.formula.RefErrorPtg

RefErrorPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.RefErrorPtg

ReflectedUniverse - Class in loci.common

Deprecated.

ReflectedUniverse() - Constructor for class loci.common.ReflectedUniverse

Deprecated.

Constructs a new reflected universe.

ReflectedUniverse(URL[]) - Constructor for class loci.common.ReflectedUniverse

Deprecated.

Constructs a new reflected universe, with the given URLs representing additional search paths for imported classes (in addition to the CLASSPATH).

ReflectedUniverse(ClassLoader) - Constructor for class loci.common.ReflectedUniverse

Deprecated.

Constructs a new reflected universe that uses the given class loader.

ReflectException - Exception in loci.common

ReflectException is the exception thrown when something goes wrong performing a reflected operation with ReflectedUniverse.

ReflectException() - Constructor for exception loci.common.ReflectException

ReflectException(String) - Constructor for exception loci.common.ReflectException

ReflectException(String, Throwable) - Constructor for exception loci.common.ReflectException

ReflectException(Throwable) - Constructor for exception loci.common.ReflectException

RefModeRecord - Class in loci.poi.hssf.record

Title: RefMode Record

RefModeRecord() - Constructor for class loci.poi.hssf.record.RefModeRecord

RefModeRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.RefModeRecord

Constructs a RefMode record and sets its fields appropriately.

RefNAPtg - Class in loci.poi.hssf.record.formula

RefNAPtg

RefNAPtg() - Constructor for class loci.poi.hssf.record.formula.RefNAPtg

RefNAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.RefNAPtg

RefNPtg - Class in loci.poi.hssf.record.formula

RefNPtg

RefNPtg() - Constructor for class loci.poi.hssf.record.formula.RefNPtg

RefNPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.RefNPtg

Creates new ValueReferencePtg

RefNVPtg - Class in loci.poi.hssf.record.formula

RefNVPtg

RefNVPtg() - Constructor for class loci.poi.hssf.record.formula.RefNVPtg

RefNVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.RefNVPtg

Creates new ValueReferencePtg

reformatData(byte[], int, int, short[], int[], int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Reformats data read as bytes into a short or int buffer.

reformatDiscontiguousData(byte[], int, int, int, WritableRaster) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Reformats bit-discontiguous data into the DataBuffer of the supplied WritableRaster.

refractive - Variable in class loci.formats.in.InCellReader

REFRACTIVE_INDEX - Static variable in class loci.formats.in.CellSensReader

refractiveIndex - Variable in class loci.formats.in.CellSensReader.Pyramid

refractiveIndex - Variable in class loci.formats.in.IvisionReader

refractiveIndex - Variable in class loci.formats.in.LIFReader

refractiveIndex - Variable in class loci.formats.in.NativeND2Reader

refractiveIndex - Variable in class loci.formats.in.ND2Handler

refractiveIndex - Variable in class loci.formats.in.ZeissCZIReader

refractiveIndex - Variable in class ome.xml.model.ObjectiveSettings

RefreshAllRecord - Class in loci.poi.hssf.record

Title: Refresh All Record

RefreshAllRecord() - Constructor for class loci.poi.hssf.record.RefreshAllRecord

RefreshAllRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.RefreshAllRecord

Constructs a RefreshAll record and sets its fields appropriately.

refresher - Variable in class loci.formats.gui.PreviewPane

Method for syncing the view to the model.

refs - Variable in class mdbtools.libmdb.MdbFile

RefVPtg - Class in loci.poi.hssf.record.formula

RefVPtg

RefVPtg() - Constructor for class loci.poi.hssf.record.formula.RefVPtg

RefVPtg(short, short, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.RefVPtg

RefVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.RefVPtg

Creates new ValueReferencePtg

Region - Class in loci.common

A class for representing a rectangular region.

Region() - Constructor for class loci.common.Region

Region(int, int, int, int) - Constructor for class loci.common.Region

Region - Class in loci.poi.hssf.util

Represents a from/to row/col square.

Region() - Constructor for class loci.poi.hssf.util.Region

Creates a new instance of Region (0,0 - 0,0)

Region(int, short, int, short) - Constructor for class loci.poi.hssf.util.Region

Region(MergeCellsRecord.MergedRegion) - Constructor for class loci.poi.hssf.util.Region

special constructor (I know this is bad but it is so wrong that its right okay) that makes a region from a mergedcells's region subrecord.

registered - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

registered - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

registerListener(ERFListener, short[]) - Method in class loci.poi.hssf.eventmodel.EventRecordFactory

Register a listener for records.

registerListener(ModelFactoryListener) - Method in class loci.poi.hssf.eventmodel.ModelFactory

register a ModelFactoryListener so that it can receive Models as they are created.

registerListener(POIFSReaderListener) - Method in class loci.poi.poifs.eventfilesystem.POIFSReader

Register a POIFSReaderListener for all documents

registerListener(POIFSReaderListener, String) - Method in class loci.poi.poifs.eventfilesystem.POIFSReader

Register a POIFSReaderListener for a document in the root directory

registerListener(POIFSReaderListener, POIFSDocumentPath, String) - Method in class loci.poi.poifs.eventfilesystem.POIFSReader

Register a POIFSReaderListener for a document in the specified directory

registerListener(POIFSReaderListener, POIFSDocumentPath, String) - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

register a POIFSReaderListener for a particular document

registerListener(POIFSReaderListener) - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

register for all documents

registerMsgLogger(Thread, MsgLogger) - Static method in class jj2000.j2k.util.FacilityManager

Registers the MsgLogger 'ml' as the logging facility of the thread 't'.

registerProgressWatch(Thread, ProgressWatch) - Static method in class jj2000.j2k.util.FacilityManager

registerServiceProviders() - Static method in class loci.formats.services.JAIIIOServiceImpl

Register the JPEG-2000 readers with the reader service.

REGISTRY - Static variable in class loci.formats.UpgradeChecker

Location of the OME registry.

registry - Variable in class loci.poi.poifs.eventfilesystem.POIFSReader

REGISTRY_IMAGEJ - Static variable in class loci.formats.UpgradeChecker

Registry ID identifying usage of Bio-Formats in ImageJ.

REGISTRY_LIBRARY - Static variable in class loci.formats.UpgradeChecker

Registry ID identifying usage of Bio-Formats as a library in general.

REGISTRY_PROPERTIES - Static variable in class loci.formats.UpgradeChecker

Properties that are sent to the OME registry.

registryClosed - Variable in class loci.poi.poifs.eventfilesystem.POIFSReader

RELATED_SOUND_FILE - Static variable in class loci.formats.tiff.IFD

relativeTime - Variable in class loci.formats.in.PrairieMetadata.Frame

relativeTime attribute of this <Frame>.

relocate(String, String, String) - Method in class loci.tests.testng.ConfigurationTree

Relocate a path from an base directory into a target directory

relocateToConfig(String) - Method in class loci.tests.testng.ConfigurationTree

Relocate a path under the root directory to the configuration directory

relocateToRoot(String) - Method in class loci.tests.testng.ConfigurationTree

Relocate a path under the configuration directory to the root directory

remaining() - Method in class loci.poi.hssf.record.RecordInputStream

The remaining number of bytes in the current record.

remainingBytes - Variable in class loci.poi.ddf.EscherRecord.EscherRecordHeader

remainingData - Variable in class loci.poi.ddf.EscherBSERecord

remainingData - Variable in class loci.poi.ddf.EscherClientAnchorRecord

remainingData - Variable in class loci.poi.ddf.EscherClientDataRecord

remainingSize - Variable in class loci.poi.hssf.record.UnicodeString.UnicodeRecordStats

remainingTileParts - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The number of tile-parts that remain to read

remove(String) - Method in class loci.poi.hpsf.CustomProperties

Removes a custom property.

remove(Property[], int) - Method in class loci.poi.hpsf.Section

Removes a field from a property array.

remove(Object) - Method in class loci.poi.hssf.model.WorkbookRecordList

remove(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

remove() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

remove() - Method in class loci.poi.hssf.usermodel.HSSFRow.CellIterator

remove(EntryNode) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

remove an entry

remove(int) - Method in interface loci.poi.poifs.storage.BlockList

remove and return the specified block from the list

remove(int) - Method in class loci.poi.poifs.storage.BlockListImpl

remove and return the specified block from the list

remove() - Method in class loci.poi.util.BinaryTree.BinaryTreeIterator

Removes from the underlying collection the last element returned by the iterator.

remove(Object) - Method in class loci.poi.util.BinaryTree

Removes the mapping for this key from this map if present

remove(int) - Method in class loci.poi.util.DoubleList

Removes the element at the specified position in this list.

remove(int) - Method in class loci.poi.util.IntList

Removes the element at the specified position in this list.

remove(int) - Method in class loci.poi.util.ShortList

Removes the element at the specified position in this list.

remove(int) - Method in class ome.xml.model.ReferenceList

remove(Object) - Method in class ome.xml.model.ReferenceList

removeAll(DoubleList) - Method in class loci.poi.util.DoubleList

Removes from this list all the elements that are contained in the specified collection

removeAll(IntList) - Method in class loci.poi.util.IntList

Removes from this list all the elements that are contained in the specified collection

removeAll(ShortList) - Method in class loci.poi.util.ShortList

Removes from this list all the elements that are contained in the specified collection

removeAll(Collection<?>) - Method in class ome.xml.model.ReferenceList

removeAllowedTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Removes a TIFFTagSet object from the list of allowed tag sets.

removeApplicationName() - Method in class loci.poi.hpsf.SummaryInformation

Removes the application name.

removeAreaAt(int) - Method in class loci.poi.hssf.record.MergeCellsRecord

essentially unmerge the cells in the "area" stored at the passed in index

removeAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Removes the author.

removeBinData(OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService

Remove all of the BinData elements from the given OME-XML metadata object.

removeBinData(OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl

removeBinData(BinData) - Method in class ome.xml.model.Mask

removeBinData(BinData) - Method in class ome.xml.model.Pixels

removeBooleanAnnotation(BooleanAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeBreak(short) - Method in class loci.poi.hssf.record.PageBreakRecord

Removes the break indicated by the parameter

removeBuiltinRecord(byte, int) - Method in class loci.poi.hssf.model.Workbook

Removes the specified Builtin NameRecord that matches the name and index

removeByteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the byte count.

removeCacheListener(CacheListener) - Method in class loci.formats.cache.Cache

removeCacheListener(CacheListener) - Method in interface loci.formats.cache.CacheReporter

Removes a listener for status update events.

removeCacheListener(CacheListener) - Method in class loci.formats.cache.CacheStrategy

removeCategory() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the category.

removeCell(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

removeCell(HSSFCell) - Method in class loci.poi.hssf.usermodel.HSSFRow

remove the HSSFCell from this row.

removeChannel(Channel) - Method in class ome.xml.model.Pixels

removeChannels(OMEXMLMetadata, int, int) - Method in interface loci.formats.services.OMEXMLService

Remove all but the first sizeC valid Channel elements from the given OME-XML metadata object.

removeChannels(OMEXMLMetadata, int, int) - Method in class loci.formats.services.OMEXMLServiceImpl

removeCharCount() - Method in class loci.poi.hpsf.SummaryInformation

Removes the character count.

removeChild(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

removeClass(Class<? extends T>) - Method in class loci.formats.ClassList

Removes the given class from the list.

removeColumnBreak(short) - Method in class loci.poi.hssf.model.Sheet

Removes a page break at the indicated column

removeColumnBreak(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Removes a page break at the indicated column

removeCommentAnnotation(CommentAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeComments() - Method in class loci.poi.hpsf.SummaryInformation

Removes the comments.

removeCompany() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the company.

removeCreateDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Removes the creation time.

removeCustomProperties() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the custom properties.

removeDataset(Dataset) - Method in class ome.xml.model.OME

removeDetector(Detector) - Method in class ome.xml.model.Instrument

removeDichroic(Dichroic) - Method in class ome.xml.model.Instrument

removeDocparts() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the doc parts.

removeDoubleAnnotation(DoubleAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeEditTime() - Method in class loci.poi.hpsf.SummaryInformation

Remove the total time spent in editing the document.

removeExperiment(Experiment) - Method in class ome.xml.model.OME

removeExperimenter(Experimenter) - Method in class ome.xml.model.OME

removeExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.OME

removeExtension(String) - Method in class loci.plugins.out.Exporter

Removes the extension of the specified name.

removeFileAnnotation(FileAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeFilter(Filter) - Method in class ome.xml.model.Instrument

removeFilterSet(FilterSet) - Method in class ome.xml.model.Instrument

removeFormatRun(UnicodeString.FormatRun) - Method in class loci.poi.hssf.record.UnicodeString

removeGST(String) - Method in class loci.formats.in.FV1000Reader

removeHeadingPair() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the heading pair.

removeHiddenCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the hidden count.

removeImage(Image) - Method in class ome.xml.model.OME

removeInstrument(Instrument) - Method in class ome.xml.model.OME

removeKeywords() - Method in class loci.poi.hpsf.SummaryInformation

Removes the keywords.

removeLastAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Removes the last author.

removeLastPrinted() - Method in class loci.poi.hpsf.SummaryInformation

Removes the lastPrinted.

removeLastSaveDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Remove the total time spent in editing the document.

removeLightSource(LightSource) - Method in class ome.xml.model.Instrument

removeLightSourceSettings(LightSourceSettings) - Method in class ome.xml.model.MicrobeamManipulation

removeLineCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the line count.

removeLinksDirty() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the links dirty.

removeListAnnotation(ListAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeLongAnnotation(LongAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeManager() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the manager.

removeMapAnnotation(MapAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeMergedRegion(int) - Method in class loci.poi.hssf.model.Sheet

removeMergedRegion(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

removes a merged region of cells (hence letting them free)

removeMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experiment

removeMMClipCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the mmclip count.

removeModelObject(String) - Method in interface ome.xml.model.OMEModel

removeModelObject(String) - Method in class ome.xml.model.OMEModelImpl

removeName(int) - Method in class loci.poi.hssf.model.Workbook

removes the name

removeName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

remove the named range by his index

removeName(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

remove the named range by his name

removeNoteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the noteCount.

removeObjective(Objective) - Method in class ome.xml.model.Instrument

removePageCount() - Method in class loci.poi.hpsf.SummaryInformation

Removes the page count.

removeParCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the par count.

removePlane(Plane) - Method in class ome.xml.model.Pixels

removePlate(Plate) - Method in class ome.xml.model.OME

removePlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Plate

removePossible(String) - Method in class loci.plugins.prefs.StringOption

Removes a possible value from the list.

removePresentationFormat() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the presentation format.

removePrintArea(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Delete the printarea for the sheet specified

removeProject(Project) - Method in class ome.xml.model.OME

removeProperty(long) - Method in class loci.poi.hpsf.MutableSection

Removes a property.

removeProperty(Property) - Method in class loci.poi.poifs.property.PropertyTable

Remove a property from the list of properties we manage

removeReagent(Reagent) - Method in class ome.xml.model.Screen

removeRevNumber() - Method in class loci.poi.hpsf.SummaryInformation

Removes the revision number.

removeROI(ROI) - Method in class ome.xml.model.OME

removeRow(RowRecord) - Method in class loci.poi.hssf.model.Sheet

Removes a row record This method is not loc sensitive, it resets loc to = dimsloc so no worries.

removeRow(RowRecord) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

removeRow(HSSFRow) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Remove a row from this sheet.

removeRowBreak(int) - Method in class loci.poi.hssf.model.Sheet

Removes a page break at the indicated row

removeRowBreak(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Removes the page break at the indicated row

removeScale() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the scale.

removeScreen(Screen) - Method in class ome.xml.model.OME

removeSecurity() - Method in class loci.poi.hpsf.SummaryInformation

Removes the security code.

removeSelectiveListener(POIFSReaderListener) - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

removeShape(Shape) - Method in class ome.xml.model.Union

removeSheet(int) - Method in class loci.poi.hssf.model.Workbook

removeSheetAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

removes sheet at the given index

removeSlideCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Removes the slide count.

removeStatusListener(StatusListener) - Method in interface loci.common.StatusReporter

removeStatusListener(StatusListener) - Method in class loci.plugins.in.ImagePlusReader

removeStatusListener(StatusListener) - Method in class loci.plugins.in.ImportProcess

removeString(String, String) - Method in class loci.poi.hssf.util.RangeAddress

removeSubject() - Method in class loci.poi.hpsf.SummaryInformation

Removes the subject.

removeTagAnnotation(TagAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Removes an element from the group of TIFFTagSets of which this directory is aware.

removeTemplate() - Method in class loci.poi.hpsf.SummaryInformation

Removes the template.

removeTermAnnotation(TermAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeThumbnail() - Method in class loci.poi.hpsf.SummaryInformation

Removes the thumbnail.

removeTiffData(TiffData) - Method in class ome.xml.model.Pixels

removeTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Removes a TIFF field from the directory.

removeTIFFField(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

removeTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Removes all TIFF fields from the directory.

removeTimestampAnnotation(TimestampAnnotation) - Method in class ome.xml.model.StructuredAnnotations

removeTitle() - Method in class loci.poi.hpsf.SummaryInformation

Removes the title.

removeUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets

removeValue(Object) - Method in class loci.poi.util.BinaryTree

Removes the mapping for this value from this map if present

removeValue(double) - Method in class loci.poi.util.DoubleList

Removes the first occurrence in this list of the specified element (optional operation).

removeValue(int) - Method in class loci.poi.util.IntList

Removes the first occurrence in this list of the specified element (optional operation).

removeValue(short) - Method in class loci.poi.util.ShortList

Removes the first occurrence in this list of the specified element (optional operation).

removeValueRecord(int, CellValueRecordInterface) - Method in class loci.poi.hssf.model.Sheet

remove a value record from the records array.

removeWell(Well) - Method in class ome.xml.model.Plate

removeWellSample(WellSample) - Method in class ome.xml.model.Well

removeWordCount() - Method in class loci.poi.hpsf.SummaryInformation

Removes the word count.

removeXMLAnnotation(XMLAnnotation) - Method in class ome.xml.model.StructuredAnnotations

renameTo(String) - Method in interface loci.poi.poifs.filesystem.Entry

Rename this Entry.

renameTo(String) - Method in class loci.poi.poifs.filesystem.EntryNode

Rename this Entry.

RENDER_OPERATION_ID - Static variable in class loci.formats.in.CellSensReader

RenderedImageSrc - Class in com.sun.media.imageioimpl.plugins.jpeg2000

RenderedImageSrc(Raster, J2KImageWriteParamJava, J2KImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Creates RenderedImageSrc for encoding a Raster.

RenderedImageSrc(RenderedImage, J2KImageWriteParamJava, J2KImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Creates RenderedImageSrc for encoding a RenderedImage.

reopenFile() - Method in class loci.formats.DelegateReader

reopenFile() - Method in class loci.formats.FileStitcher

reopenFile() - Method in class loci.formats.FormatReader

reopenFile() - Method in interface loci.formats.IFormatReader

Reopen any files that were closed, and which are expected to be open while the reader is open.

reopenFile() - Method in class loci.formats.ImageReader

reopenFile() - Method in class loci.formats.in.AnalyzeReader

reopenFile() - Method in class loci.formats.in.CellH5Reader

reopenFile() - Method in class loci.formats.in.CellSensReader

reopenFile() - Method in class loci.formats.in.FlowSightReader

reopenFile() - Method in class loci.formats.in.HitachiReader

reopenFile() - Method in class loci.formats.in.ICSReader

reopenFile() - Method in class loci.formats.in.ImagicReader

reopenFile() - Method in class loci.formats.in.MinimalTiffReader

reopenFile() - Method in class loci.formats.in.NiftiReader

reopenFile() - Method in class loci.formats.in.OMETiffReader

reopenFile() - Method in class loci.formats.in.ScreenReader

reopenFile() - Method in class loci.formats.ReaderWrapper

reorder(int) - Method in class loci.formats.DimensionSwapper

reorder(ImagePlus, String, String) - Static method in class loci.plugins.Slicer

Reorder the given ImagePlus's stack.

reorderResolutions() - Method in class loci.formats.in.SVSReader

Validate the order of resolutions for the current series, in decending order of size.

reorderXSLT - Static variable in class loci.formats.services.OMEXMLServiceImpl

Reordering stylesheet.

repeat(String, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

repetitionRate - Variable in class ome.xml.model.Laser

replace(String, Box) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

replaceChild(Node, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

replaceExtension(String, String, String) - Method in class loci.formats.in.FV1000Reader

replacementMetadataStore - Variable in class loci.formats.Memoizer

MetadataStore created internally.

replacePixels(RenderedImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replacePixels(Raster, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replacePixelsByteCounts - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replacePixelsByteCountsPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replacePixelsIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replacePixelsLock - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replacePixelsMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replacePixelsOffsetsPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replacePixelsRegion - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replacePixelsTileOffsets - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

replaceString(String, String, String) - Method in class loci.poi.hssf.util.RangeAddress

replaceValueRecord(CellValueRecordInterface) - Method in class loci.poi.hssf.model.Sheet

replace a value record from the records array.

repoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

reportCRCError() - Static method in class loci.common.CBZip2InputStream

reportException(Throwable) - Static method in class loci.plugins.util.WindowTools

Reports the given exception with stack trace in an ImageJ error dialog.

reportException(Throwable, boolean) - Static method in class loci.plugins.util.WindowTools

Reports the given exception with stack trace in an ImageJ error dialog.

reportException(Throwable, boolean, String) - Static method in class loci.plugins.util.WindowTools

Reports the given exception with stack trace in an ImageJ error dialog.

reportProgress() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

REPRESENTATION_KEYS - Static variable in class loci.formats.in.ICSReader

repT - Variable in class loci.formats.in.SDTInfo

required - Variable in enum ome.jxr.ifd.IFDEntry

requiredSize - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

RES_CODES - Static variable in class com.sun.media.imageioimpl.common.LZWStringTable

codesize + Reserved Codes

RES_LY_COMP_POS_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType

The bit stream is Resolution/Layer/Component/Position progressive : 1

RES_POS_COMP_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType

The bit stream is Resolution/Position/Component/Layer progressive : 2

RES_SUFFIX - Static variable in class loci.formats.in.FlexReader

rescale(int, int) - Method in class loci.formats.gui.SignedColorModel

rescale(int) - Method in class loci.formats.gui.SignedColorModel

RESCALE_INTERCEPT - Static variable in class loci.formats.in.DicomReader

RESCALE_SLOPE - Static variable in class loci.formats.in.DicomReader

rescaleIntercept - Variable in class loci.formats.in.DicomReader

rescaleSlope - Variable in class loci.formats.in.DicomReader

reserved - Variable in class loci.poi.hssf.record.GroupMarkerSubRecord

reserved - Variable in class loci.poi.hssf.record.NoteStructureSubRecord

reserved - Variable in class loci.poi.hssf.record.ValueRangeRecord

reserved - Static variable in class loci.poi.hssf.record.WindowOneRecord

reserved1 - Variable in class loci.formats.in.SDTInfo

reserved1 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

reserved2 - Variable in class loci.formats.in.SDTInfo

reserved2 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

reserved3 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

RESERVED_B - Static variable in class ome.jxr.constants.Image

reservedB - Variable in class ome.jxr.parser.DatastreamParser

reservedD - Variable in class ome.jxr.parser.DatastreamParser

reset() - Method in class com.sun.media.imageio.stream.RawImageInputStream

reset() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

reset() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

reset() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

reset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

reset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

reset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

reset() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

reset() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

reset() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

reset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

reset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

reset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

reset() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

reset() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

reset() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

reset() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Resets the buffer.

reset() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Resets the contents of this HeaderEncoder to its initial state.

reset() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Resets the state of the object to the initial state, as if the object was just created.

reset() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Resets the tree values and state.

reset(int[]) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Resets the tree values and state.

reset() - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput

Resets the bit buffer to empty, without writing anything to the underlying byte output, and resets the byte count.

reset() - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Discards all the buffered data, by resetting the counter of written bytes to 0.

reset() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Reinitializes the MQ coder and the underlying 'ByteOutputBuffer' buffer as if a new object was instantaited.

reset() - Static method in class loci.common.Location

Clear all caches and reset cache-related bookkeeping variables to their original values.

reset() - Method in class loci.common.NIOInputStream

reset() - Method in class loci.common.RandomAccessInputStream

reset() - Method in class loci.formats.cache.Cache

Reallocates the cache.

reset() - Method in class loci.plugins.util.RecordedImageProcessor

reset(ImageProcessor) - Method in class loci.plugins.util.RecordedImageProcessor

reset() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Repositions this stream to the position at the time the mark method was last called on this input stream.

reset() - Method in class loci.poi.util.BlockingInputStream

resetBinaryThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

resetCtxt(int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Resets a context to the original probability distribution.

resetCtxt(int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

Resets a context to the original probability distribution, and sets its more probable symbol to 0.

resetCtxts() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Resets a context to the original probability distribution.

resetCtxts() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Resets all contexts to their original probability distribution and sets all more probable symbols to 0.

resetHeaderInfo() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

resetHeaderMarkers() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Method that resets members indicating which markers have already been found

resetLocal() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Resets locally defined instance variables.

resetLocal() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

resetMinAndMax() - Method in class loci.plugins.util.RecordedImageProcessor

resetMQ - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

If this is enabled the probability estimates of the MQ coder are reset after each arithmetically coded (i.e.

resetRoi() - Method in class loci.plugins.util.RecordedImageProcessor

resetStream() - Method in class loci.common.BZip2Handle

resetStream() - Method in class loci.common.GZipHandle

resetStream() - Method in class loci.common.StreamHandle

Close and reopen the stream; the stream pointer and mark should be reset to 0.

resetStream() - Method in class loci.common.URLHandle

resetStream() - Method in class loci.common.ZipHandle

resetThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

resize(int) - Method in class loci.plugins.util.RecordedImageProcessor

resize(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

resize() - Method in class loci.poi.hssf.usermodel.HSSFPicture

Reset the image to the original size.

resizeCols(int, int) - Method in class loci.poi.util.DoubleList2d

resizeCols(int, int) - Method in class loci.poi.util.IntList2d

resizeCols(int, int) - Method in class loci.poi.util.List2d

resizeRows(int) - Method in class loci.poi.util.DoubleList2d

resizeRows(int) - Method in class loci.poi.util.IntList2d

resizeRows(int) - Method in class loci.poi.util.List2d

resLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

reslice(ImagePlus, boolean, boolean, boolean, String) - Method in class loci.plugins.Slicer

resLvl - Variable in class jj2000.j2k.wavelet.Subband

The resolution level to which this subband contributes.

reslvl - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The resquested image resolution level for reconstruction.

resolution - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Specifies the resolution level wanted for the decoded image (0 means the lowest available resolution, the resolution level gives an image with the original dimension).

resolution - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

The resolution level requested.

resolution - Variable in class loci.formats.codec.JPEG2000CodecOptions

The resolution level as would be provided to: J2KImageReadParam.setResolution(int) (READ).

resolution - Variable in class loci.formats.FormatReader

The number of the current resolution.

RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

RESOLUTION_UNIT - Static variable in class loci.formats.tiff.IFD

RESOLUTION_UNIT_CENTIMETER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ResolutionUnit" tag.

RESOLUTION_UNIT_INCH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ResolutionUnit" tag.

RESOLUTION_UNIT_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ResolutionUnit" tag.

ResolutionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Resolution Box of JPEG JP2 file format.

ResolutionBox(int, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Constructs a ResolutionBox from the provided type and content data array.

ResolutionBox(int, float, float) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Constructs a ResolutionBox from the provided type and horizontal/vertical resolutions.

ResolutionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Constructs a ResolutionBox based on the provided org.w3c.dom.Node.

resolutionCount - Variable in class loci.formats.CoreMetadata

resolutionCount - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

resolutionLevels - Variable in class loci.formats.in.JPEG2000MetadataParser

Number of JPEG 2000 resolution levels the file has.

resolutionLevels - Variable in class loci.formats.in.JPEG2000Reader

The number of JPEG 2000 resolution levels the file has.

resolutionLevels - Variable in class loci.formats.in.JPXReader

The number of JPEG 2000 resolution levels the file has.

resolutionLevels - Variable in class loci.formats.in.MinimalTiffReader

Number of JPEG 2000 resolution levels.

resolutionX - Variable in class loci.formats.in.OperettaReader.Plane

resolutionY - Variable in class loci.formats.in.OperettaReader.Plane

resolveAggregateFunction(Data, Object) - Method in class mdbtools.dbengine.tasks.AggregateQuery

resolveColumn(Data, Object) - Method in class mdbtools.dbengine.SelectEngine

resolve a column down to it's final value

resolveColumn(Data, Object) - Method in class mdbtools.dbengine.tasks.AggregateQuery

resolveColumn(Data, Object) - Method in class mdbtools.dbengine.tasks.FilterData

resolveColumn(Data, Object) - Method in class mdbtools.dbengine.tasks.NonAggregateQuery

resolveEntity(String, String) - Method in class loci.common.xml.BaseHandler

resolveReferences() - Method in interface ome.xml.meta.OMEXMLMetadata

Resolve model object cross-references.

resolveReferences() - Method in class ome.xml.meta.OMEXMLMetadataImpl

resolveReferences() - Method in interface ome.xml.model.OMEModel

resolveReferences() - Method in class ome.xml.model.OMEModelImpl

resolveResource(String, String, String, String, String) - Method in class ome.specification.SchemaResolver

Resolves known namespace locations to their appropriate jar resource

resolveTable(int) - Method in class mdbtools.dbengine.sql.Select

resourceBaseName - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

resourceBaseName - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

resourceBaseName - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

resourceCount - Variable in class loci.formats.ResourceNamer

ResourceNamer - Class in loci.formats

Utility class helping with generating human-readable resource names based on alphanumeric indexing.

ResourceNamer(int) - Constructor for class loci.formats.ResourceNamer

resourceNamer - Variable in class loci.formats.tools.FakeImage

restart(int, int[], int, CBlkInfo[][][][][], boolean, ByteArrayInputStream) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Re-initialize the PktDecoder instance at the beginning of a new tile.

restartAlphabet() - Method in class loci.formats.ResourceNamer

Resets the internal state of the class so that it starts alphabet generation from the first letter (ASCII A).

restartInterval - Variable in class loci.formats.services.JPEGTurboServiceImpl

restartMarkers - Variable in class loci.formats.in.HamamatsuVMSReader

restartMarkers - Variable in class loci.formats.services.JPEGTurboServiceImpl

resText - Variable in class loci.formats.gui.PreviewPane

resTip - Variable in class loci.formats.gui.PreviewPane

restore() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Restores the last saved state of this object.

restore() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Restores the saved values and state of the tree.

result(String, boolean) - Static method in class loci.tests.testng.FormatReaderTest

Outputs test result and generates appropriate assertion.

result(String, boolean, String) - Static method in class loci.tests.testng.FormatReaderTest

Outputs test result with optional extra message and generates appropriate assertion.

result(String, boolean, String) - Static method in class loci.tests.testng.FormatWriterTest

Outputs test result with optional extra message and generates appropriate assertion.

result - Variable in class mdbtools.dbengine.tasks.AggregateQuery

result - Variable in class mdbtools.dbengine.tasks.FilterData

result - Variable in class mdbtools.dbengine.tasks.LoadData

result - Variable in class mdbtools.dbengine.tasks.NonAggregateQuery

result - Variable in class mdbtools.dbengine.tasks.SimpleSort

resultFile - Variable in class loci.formats.in.MIASReader

Path to file containing analysis results for all plates.

retainAll(DoubleList) - Method in class loci.poi.util.DoubleList

Retains only the elements in this list that are contained in the specified collection.

retainAll(IntList) - Method in class loci.poi.util.IntList

Retains only the elements in this list that are contained in the specified collection.

retainAll(ShortList) - Method in class loci.poi.util.ShortList

Retains only the elements in this list that are contained in the specified collection.

retainAll(Collection<?>) - Method in class ome.xml.model.ReferenceList

returnClass - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

REUSE - Static variable in class loci.formats.tiff.IFD

rev - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The reversible flag to use in compression

REV_FILTER_STR - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

The reversible default filter

reversed - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

reverseFileMapping - Variable in class loci.formats.in.FlexReader

reverseX - Variable in class loci.formats.in.PDSReader

reverseY - Variable in class loci.formats.in.PDSReader

reversible - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

The reversible flag for each component in each tile.

revision - Variable in class loci.formats.in.SDTInfo

Software revision number (lower 4 bits >= 10(decimal)).

rewind() - Method in class mdbtools.dbengine.RewindableData

RewindableData - Class in mdbtools.dbengine

Allow the data to be restarted

RewindableData(Data, int) - Constructor for class mdbtools.dbengine.RewindableData

rgb - Variable in class loci.formats.CoreMetadata

Indicates whether or not the images are stored as RGB (multiple channels per plane).

RGB - Static variable in class loci.formats.in.CellSensReader

RGB_MASK - Static variable in class loci.formats.in.BMPReader

rgbChannels - Variable in class loci.tests.testng.ConversionTest.Plane

rgbPlanar - Variable in class loci.tests.testng.ConversionTest.Plane

rgh - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct height reported in the reference grid

rgn - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the RGN marker segments found in main and first tile-part header.

RGN - Static variable in interface jj2000.j2k.codestream.Markers

Region-of-interest (RGN): 0xFF5E

RGN_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for RGN marker segment found

rgulx - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct horizontal upper-left coordinate in the reference grid

rguly - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct vertical upper-left coordinate in the reference grid

rgw - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct width reported in the reference grid

RHKReader - Class in loci.formats.in

RHKReader is the file format reader for RHK Technologies files.

RHKReader() - Constructor for class loci.formats.in.RHKReader

Constructs a new RHK reader.

richText - Static variable in class loci.poi.hssf.record.UnicodeString

RIGHT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

right - Variable in class loci.poi.hssf.usermodel.HSSFFooter

right - Variable in class loci.poi.hssf.usermodel.HSSFHeader

right - Variable in class mdbtools.dbengine.sql.Condition

right - Variable in class mdbtools.dbengine.sql.Equation

right - Variable in class mdbtools.dbengine.sql.Join

RightMargin - Static variable in class loci.poi.hssf.model.Sheet

RightMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

rightMargin - Variable in class ome.jxr.parser.DatastreamParser

RightMarginRecord - Class in loci.poi.hssf.record

Record for the right margin.

RightMarginRecord() - Constructor for class loci.poi.hssf.record.RightMarginRecord

RightMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.RightMarginRecord

Constructs a RightMargin record and sets its fields appropriately.

rights - Variable in class ome.xml.model.OME

Rights - Class in ome.xml.model

Rights() - Constructor for class ome.xml.model.Rights

Default constructor.

Rights(Element, OMEModel) - Constructor for class ome.xml.model.Rights

Constructs Rights recursively from an XML DOM tree.

Rights(Rights) - Constructor for class ome.xml.model.Rights

Copy constructor.

rightsHeld - Variable in class ome.xml.model.Rights

rightsHolder - Variable in class ome.xml.model.Rights

rk - Variable in class loci.poi.hssf.record.RkRec

RK_IEEE_NUMBER - Static variable in class loci.poi.hssf.record.RKRecord

RK_IEEE_NUMBER_TIMES_100 - Static variable in class loci.poi.hssf.record.RKRecord

RK_INTEGER - Static variable in class loci.poi.hssf.record.RKRecord

RK_INTEGER_TIMES_100 - Static variable in class loci.poi.hssf.record.RKRecord

RkRec - Class in loci.poi.hssf.record

RkRec() - Constructor for class loci.poi.hssf.record.RkRec

RKRecord - Class in loci.poi.hssf.record

Title: RK Record Description: An internal 32 bit number with the two most significant bits storing the type.

RKRecord() - Constructor for class loci.poi.hssf.record.RKRecord

RKRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.RKRecord

Constructs a RK record and sets its fields appropriately.

RKUtil - Class in loci.poi.hssf.util

Utility class for helping convert RK numbers.

RKUtil() - Constructor for class loci.poi.hssf.util.RKUtil

RLC_CTXT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The RLC context

RLC_CTXT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The RLC context

RLC_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The mask to isolate the bits necessary to identify RLC coding state (significant, visited and non-zero context, for row 1 and 2).

RLC_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The mask to isolate the bits necessary to identify RLC coding state (significant, visited and non-zero context, for row 1 and 2).

RLE_4 - Static variable in class loci.formats.in.BMPReader

RLE_8 - Static variable in class loci.formats.in.BMPReader

rnd - Static variable in class loci.poi.util.TempFile

ROI - Class in jj2000.j2k.roi.encoder

This class contains the shape of a single ROI.

ROI(int, ImgReaderPGM) - Constructor for class jj2000.j2k.roi.encoder.ROI

Constructor for ROI with arbitrary shape

ROI(int, int, int, int, int) - Constructor for class jj2000.j2k.roi.encoder.ROI

Constructor for rectangular ROIs

ROI(int, int, int, int) - Constructor for class jj2000.j2k.roi.encoder.ROI

Constructor for circular ROIs

roi - Variable in class jj2000.j2k.roi.encoder.ROIScaler

Flag indicating the presence of ROIs

roi - Variable in class loci.formats.in.LeicaHandler

ROI - Class in ome.xml.model

ROI() - Constructor for class ome.xml.model.ROI

Default constructor.

ROI(Element, OMEModel) - Constructor for class ome.xml.model.ROI

Constructs ROI recursively from an XML DOM tree.

ROI(ROI) - Constructor for class ome.xml.model.ROI

Copy constructor.

ROI_SIGNATURE - Static variable in class loci.formats.in.ZeissZVIReader

ROIDeScaler - Class in jj2000.j2k.roi

This class takes care of the de-scaling of ROI coefficients.

ROIDeScaler(CBlkQuantDataSrcDec, MaxShiftSpec) - Constructor for class jj2000.j2k.roi.ROIDeScaler

Constructor of the ROI descaler, takes EntropyDEcoder as source of data to de-scale.

roiDrawFile - Variable in class loci.formats.in.TrestleReader

roids - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

roiFile - Variable in class loci.formats.in.BDReader

roiFile - Variable in class loci.formats.in.TrestleReader

roiFilenames - Variable in class loci.formats.in.FV1000Reader

roiFiles - Variable in class loci.formats.in.MIASReader

ROIHandler - Class in loci.plugins.util

Utility class for managing regions of interest within ImageJ.

ROIHandler() - Constructor for class loci.plugins.util.ROIHandler

roiIDs - Variable in class loci.formats.in.BaseZeissReader

roiInPkt - Variable in class jj2000.j2k.codestream.writer.PktEncoder

Whether or not there is ROI information in the last encoded Packet

roiInTile - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

Flag indicating if any ROI was found to be in this tile

roiInTile - Variable in class jj2000.j2k.roi.encoder.ROIMaskGenerator

roiLen - Variable in class jj2000.j2k.codestream.writer.PktEncoder

Length to read in current packet body to get all the ROI information

roiLinks - Variable in class ome.xml.model.Annotation

roiLinks - Variable in class ome.xml.model.Image

roiLinks - Variable in class ome.xml.model.MicrobeamManipulation

roiMask - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

The ROI mask for the current tile for all components

roiMask - Variable in class jj2000.j2k.roi.encoder.ROIScaler

The ROI mask

ROIMaskGenerator - Class in jj2000.j2k.roi.encoder

This class generates the ROI masks for the ROIScaler.It gives the scaler the ROI mask for the current code-block.

ROIMaskGenerator(ROI[], int) - Constructor for class jj2000.j2k.roi.encoder.ROIMaskGenerator

The constructor of the mask generator

ROIRef - Class in ome.xml.model

ROIRef() - Constructor for class ome.xml.model.ROIRef

Default constructor.

ROIRef(Element, OMEModel) - Constructor for class ome.xml.model.ROIRef

Constructs ROIRef recursively from an XML DOM tree.

ROIRef(ROIRef) - Constructor for class ome.xml.model.ROIRef

Copy constructor.

ROIs - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies ROIs shape and location.

rois - Variable in class jj2000.j2k.decoder.DecoderSpecs

ROI maxshift value specifications

rois - Variable in class jj2000.j2k.roi.encoder.ROIMaskGenerator

Array containing the ROIs

rois - Variable in class loci.formats.in.LiFlimReader

rois - Variable in class loci.formats.in.ND2Handler

roIs - Variable in class ome.xml.model.OME

roiSc - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Reference to the ROI module

ROIScaler - Class in jj2000.j2k.roi.encoder

This class deals with the ROI functionality.

ROIScaler(Quantizer, ROIMaskGenerator, boolean, int, boolean, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.roi.encoder.ROIScaler

Constructor of the ROI scaler, takes a Quantizer as source of data to scale.

root - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

root - Variable in class loci.formats.services.NetCDFServiceImpl

Root of the NetCDF file.

root - Variable in class loci.formats.services.POIServiceImpl

root - Variable in class loci.tests.testng.ConfigurationTree

Root of tree structure containing configuration data.

root - Variable in class ome.xml.meta.AbstractOMEXMLMetadata

The root element of OME-XML.

root - Variable in class ome.xml.meta.OMEXMLMetadataImpl

ROOT_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants

rootDir - Variable in class loci.tests.testng.ConfigurationTree

Directory on the file system associated with the tree root.

rootIFD - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

rootIFDOffset - Variable in class ome.jxr.parser.FileParser

rootList - Variable in class loci.formats.in.BDReader

rootName - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

RootProperty - Class in loci.poi.poifs.property

Root property

RootProperty() - Constructor for class loci.poi.poifs.property.RootProperty

Default constructor

RootProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.RootProperty

reader constructor

rotate(double) - Method in class loci.plugins.util.RecordedImageProcessor

rotate(double) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

rotate(double, double, double) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

rotate(double) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

rotate(double, double, double) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

rotate90(Point) - Method in class jj2000.j2k.ModuleSpec

Rotate the ModuleSpec instance by 90 degrees (this modifies only tile and tile-component specifications).

rotateLeft() - Method in class loci.plugins.util.RecordedImageProcessor

rotateLeft(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree

do a rotate left.

rotateRight() - Method in class loci.plugins.util.RecordedImageProcessor

rotateRight(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree

do a rotate right.

ROTATION - Static variable in class loci.formats.FormatTools

Identifies the Rotation dimensional type, representing a dimension consisting of rotations.

ROTATION - Static variable in class loci.formats.in.FV1000Reader

rotation - Variable in class loci.formats.in.LeicaHandler.ROI

rotation - Variable in class loci.formats.in.LIFReader.ROI

rotation - Variable in class loci.poi.hssf.record.TextRecord

rotation - Variable in class loci.poi.hssf.record.TickRecord

ROTATION_NONE - Static variable in class loci.poi.hssf.record.TextRecord

ROTATION_ROTATED_90_DEGREES - Static variable in class loci.poi.hssf.record.TextRecord

ROTATION_ROTATED_90_DEGREES_CLOCKWISE - Static variable in class loci.poi.hssf.record.TextRecord

ROTATION_TOP_TO_BOTTOM - Static variable in class loci.poi.hssf.record.TextRecord

rotationLabels - Variable in class loci.formats.in.ZeissCZIReader

rotations - Variable in class loci.formats.in.ZeissCZIReader

roundBpp(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

row - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

row - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

row - Variable in class loci.formats.in.FlexReader.FlexFile

row - Variable in class loci.formats.in.OMEXMLReader.BinData

row - Variable in class loci.formats.in.OperettaReader.Plane

row - Variable in class loci.formats.in.TextReader

Current row number.

row - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

row - Variable in class loci.formats.tools.AmiraParameters

row - Variable in class loci.poi.hssf.usermodel.HSSFComment

row - Variable in class loci.poi.hssf.usermodel.HSSFRow

reference to low level representation

row - Variable in class loci.poi.hssf.util.CellReference

Creates new CellReference

row - Variable in class ome.xml.model.Well

row1 - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor

row2 - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor

ROW_COUNT - Static variable in class loci.formats.codec.JPEGTileDecoder.TileCache

row_count_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

row_from - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

upper lefthand corner row

ROW_NAMING_CONVENTION - Static variable in class ome.specification.XMLMockObjects

The default naming convention for rows.

row_num - Variable in class mdbtools.libmdb.MdbHandle

row_to - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

lower right hand corner row

rowAbs - Variable in class loci.poi.hssf.util.CellReference

rowBreaks - Variable in class loci.poi.hssf.model.Sheet

rowBytes - Variable in class loci.formats.in.PictReader

Number of bytes in a row of pixel data (variable).

rowCount - Variable in class loci.formats.in.BaseZeissReader

rowCount - Variable in class ome.metakit.ColumnMap

rowCount - Variable in class ome.metakit.MetakitReader

rowFrom - Variable in class loci.poi.hssf.util.Region

rowHasCells(int) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Returns true if the row has cells attached to it

rowIterator() - Method in class loci.poi.hssf.usermodel.HSSFSheet

rowLength - Variable in class loci.formats.in.TextReader

Number of tokens per row.

rowName - Variable in class loci.formats.in.InCellReader

rowNamingConvention - Variable in class ome.xml.model.Plate

rowNum - Variable in class loci.poi.hssf.usermodel.HSSFRow

rowPtr - Variable in class loci.formats.codec.RPZACodec

rowRecIterator - Variable in class loci.poi.hssf.model.Sheet

RowRecord - Class in loci.poi.hssf.record

Title: Row Record

RowRecord() - Constructor for class loci.poi.hssf.record.RowRecord

RowRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.RowRecord

Constructs a Row record and sets its fields appropriately.

RowRecordsAggregate - Class in loci.poi.hssf.record.aggregates

RowRecordsAggregate() - Constructor for class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Creates a new instance of ValueRecordsAggregate

rowRelative - Variable in class loci.poi.hssf.record.formula.Area3DPtg

rowRelative - Variable in class loci.poi.hssf.record.formula.AreaPtg

rowRelative - Variable in class loci.poi.hssf.record.formula.Ref3DPtg

rowRelative - Variable in class loci.poi.hssf.record.formula.ReferencePtg

rows - Variable in class loci.formats.in.CellSensReader

ROWS - Static variable in class loci.formats.in.DicomReader

rows - Variable in class loci.poi.hssf.model.Sheet

rows - Variable in class loci.poi.hssf.usermodel.HSSFSheet

rows - Variable in class loci.poi.util.DoubleList2d

rows - Variable in class loci.poi.util.IntList2d

rows - Variable in class loci.poi.util.List2d

rows - Variable in class mdbtools.dbengine.MemoryData

ROWS - Static variable in class ome.specification.XMLMockObjects

The default number of rows for a plate.

rows - Variable in class ome.xml.model.Plate

ROWS_PER_STRIP - Static variable in class loci.formats.tiff.IFD

rowsDone - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

rowsumsbelow - Static variable in class loci.poi.hssf.record.WSBoolRecord

rowsumsright - Static variable in class loci.poi.hssf.record.WSBoolRecord

rowTo - Variable in class loci.poi.hssf.util.Region

rPad - Variable in class loci.formats.gui.CacheIndicator

RPZACodec - Class in loci.formats.codec

Implements encoding and decoding methods for Apple RPZA.

RPZACodec() - Constructor for class loci.formats.codec.RPZACodec

rQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The resolution in which the ncb quit condition was reached

rs - Variable in class jj2000.j2k.entropy.Progression

Resolution index for the start of a progression

rsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

RSIZ_BASELINE - Static variable in interface jj2000.j2k.codestream.Markers

No special capabilities (baseline) in codestream, in Rsiz field of SIZ marker: 0x00.

RSIZ_ER_FLAG - Static variable in interface jj2000.j2k.codestream.Markers

Error resilience marker flag bit in Rsiz field in SIZ marker: 0x01

RSIZ_ROI - Static variable in interface jj2000.j2k.codestream.Markers

ROI present marker flag bit in Rsiz field in SIZ marker: 0x02

rspoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

RST0 - Static variable in class loci.formats.services.JPEGTurboServiceImpl

RST7 - Static variable in class loci.formats.services.JPEGTurboServiceImpl

RST_0 - Static variable in class loci.formats.codec.LosslessJPEGCodec

RST_1 - Static variable in class loci.formats.codec.LosslessJPEGCodec

RST_2 - Static variable in class loci.formats.codec.LosslessJPEGCodec

RST_3 - Static variable in class loci.formats.codec.LosslessJPEGCodec

RST_4 - Static variable in class loci.formats.codec.LosslessJPEGCodec

RST_5 - Static variable in class loci.formats.codec.LosslessJPEGCodec

RST_6 - Static variable in class loci.formats.codec.LosslessJPEGCodec

RST_7 - Static variable in class loci.formats.codec.LosslessJPEGCodec

rts - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Regular termination specifications

run() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

Calls the 'compressCodeBlock()' method with thread local arguments.

run() - Method in class jj2000.j2k.util.ThreadPool.ThreadPoolThread

The method that is run by the thread.

run() - Method in class loci.formats.cache.CacheUpdater

run() - Method in class loci.formats.gui.DataConverter

run() - Method in class loci.formats.gui.ImageViewer

Handles animation.

run() - Method in class loci.formats.gui.PreviewPane

Thumbnail loading routine.

RUN - Static variable in class loci.formats.ResourceNamer

run(String) - Method in class loci.plugins.About

run() - Method in class loci.plugins.config.ConfigWindow

Populate configuration information in a separate thread.

run(String) - Method in class loci.plugins.config.LociConfig

Executes the plugin.

run(String) - Method in class loci.plugins.config.LociInstaller

Executes the plugin.

run(String) - Method in class loci.plugins.in.Importer

Executes the plugin.

run() - Method in class loci.plugins.in.ThumbLoader

Does the work of loading the thumbnails.

run(ImageProcessor) - Method in class loci.plugins.LociExporter

Executes the plugin.

run(String) - Method in class loci.plugins.LociImporter

Executes the plugin.

run(String) - Method in class loci.plugins.macro.LociFunctions

run(String) - Method in class loci.plugins.macro.MacroFunctions

run() - Method in class loci.plugins.out.Exporter

Executes the plugin.

run(String) - Method in class loci.plugins.shortcut.ShortcutPanel

Executes the plugin.

run(ImageProcessor) - Method in class loci.plugins.Slicer

run(String) - Method in class loci.plugins.Updater

run() - Method in class loci.poi.hssf.dev.BiffViewer

Method run starts up BiffViewer...

run() - Method in class loci.poi.hssf.dev.EFBiffViewer

run() - Method in class loci.poi.hssf.dev.FormulaViewer

Method run

run(InputStream) - Method in class loci.poi.hssf.eventmodel.ModelFactory

Start processing the Workbook stream into Model events.

run() - Method in class loci.tests.testng.Jpeg2000GrindTest.ChannelRunnable

run() - Method in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

run(int, int, int, int, int, int, int, int) - Method in interface loci.tests.testng.TestTools.TileLoopIteration

Invoke a single loop iteration.

run() - Method in class mdbtools.dbengine.tasks.AggregateQuery

run() - Method in class mdbtools.dbengine.tasks.FilterData

run() - Method in class mdbtools.dbengine.tasks.LoadData

run() - Method in class mdbtools.dbengine.tasks.NonAggregateQuery

run() - Method in class mdbtools.dbengine.tasks.SimpleSort

run() - Method in interface mdbtools.dbengine.tasks.Task

RUNA - Static variable in class loci.common.CBZip2InputStream

runAllTests() - Method in class mdbtools.dbengine.Tests

runAndWrite() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Runs the rate allocation algorithm and writes the data to the bit stream writer object provided to the constructor.

runAndWrite() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Runs the rate allocation algorithm and writes the data to the bit stream.

RUNB - Static variable in class loci.common.CBZip2InputStream

runPlugIn(String, String) - Static method in class loci.plugins.shortcut.ShortcutPanel

Executes the given plugin, in a separate thread.

runTarget(Runnable, Object) - Method in class jj2000.j2k.util.ThreadPool

Runs the run method of the specified target in an idle thread of this pool.

runTarget(Runnable, Object, boolean) - Method in class jj2000.j2k.util.ThreadPool

Runs the run method of the specified target in an idle thread of this pool.

runTarget(Runnable, Object, boolean, boolean) - Method in class jj2000.j2k.util.ThreadPool

Runs the run method of the specified target in an idle thread of this pool.

runTest(int) - Method in class mdbtools.dbengine.Tests

runTests(int, int) - Method in class mdbtools.dbengine.Tests

RWC_FRAME_ORIGIN - Static variable in class loci.formats.in.CellSensReader

RWC_FRAME_SCALE - Static variable in class loci.formats.in.CellSensReader

RWC_FRAME_UNIT - Static variable in class loci.formats.in.CellSensReader

S

S - Static variable in class loci.formats.AxisGuesser

Prefix endings indicating series dimension.

s - Variable in class mdbtools.libmdb.Holder

s - Variable in class mdbtools.libmdb.MdbAny

S - Static variable in class ome.units.UNITS

S_AXIS - Static variable in class loci.formats.AxisGuesser

Axis type for series.

S_MAX_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD

S_MIN_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD

safeMultiply32(int...) - Static method in class loci.common.DataTools

Checks that the product of the given sizes does not exceed the 32-bit integer limit (i.e., Integer.MAX_VALUE).

safeMultiply64(long...) - Static method in class loci.common.DataTools

Checks that the product of the given sizes does not exceed the 64-bit integer limit (i.e., Long.MAX_VALUE).

samePrefix(String, String) - Static method in class loci.common.DataTools

Check if two filenames have the same prefix.

SAMP_420 - Static variable in class org.libjpegturbo.turbojpeg.TJ

4:2:0 chrominance subsampling.

SAMP_422 - Static variable in class org.libjpegturbo.turbojpeg.TJ

4:2:2 chrominance subsampling.

SAMP_440 - Static variable in class org.libjpegturbo.turbojpeg.TJ

4:4:0 chrominance subsampling.

SAMP_444 - Static variable in class org.libjpegturbo.turbojpeg.TJ

4:4:4 chrominance subsampling (no chrominance subsampling).

SAMP_GRAY - Static variable in class org.libjpegturbo.turbojpeg.TJ

Grayscale.

SAMPLE_FLAGS_LIST - Static variable in class loci.formats.in.CellSensReader

SAMPLE_FORMAT - Static variable in class loci.formats.tiff.IFD

SAMPLE_FORMAT_FLOATING_POINT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "SampleFormat" tag.

SAMPLE_FORMAT_SIGNED_INTEGER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "SampleFormat" tag.

SAMPLE_FORMAT_UNDEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "SampleFormat" tag.

SAMPLE_FORMAT_UNSIGNED_INTEGER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "SampleFormat" tag.

SAMPLE_ID_LIST - Static variable in class loci.formats.in.CellSensReader

SAMPLE_MASK - Static variable in class loci.formats.in.CellSensReader

sampleFormat - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the SampleFormat tag.

sampleFormat - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

sampleFormat - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

sampleModel - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The image's SampleModel.

sampleModel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

sampleModel - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

sampleModel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

sampleModel - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

sampleModel - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

The sample model of the image to be compressed.

SAMPLES_PER_PIXEL - Static variable in class loci.formats.in.DicomReader

SAMPLES_PER_PIXEL - Static variable in class loci.formats.tiff.IFD

sampleSize - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

samplesPerPixel - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the SamplesPerPixel tag.

samplesPerPixel - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

samplesPerPixel - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

samplesPerPixel - Variable in class ome.xml.model.Channel

sampleTable - Variable in class loci.formats.in.VolocityReader

sampleTime - Variable in class loci.formats.in.GatanReader

sanitize(String) - Static method in class loci.common.DataTools

Remove unprintable characters from the given string.

sanitize(String, boolean) - Method in class loci.formats.gui.XMLCellRenderer.XMLItem

Sanitizes strings to appear correctly in HTML.

sanitizeControl(String) - Static method in class loci.formats.in.NativeND2Reader

Remove control and invalid characters from the given string.

sanitizeDouble(String) - Static method in class loci.common.DataTools

Normalize the decimal separator for the user's locale.

sanitizeFile(String, String) - Method in class loci.formats.in.FV1000Reader

sanitizeValue(String) - Method in class loci.formats.in.FV1000Reader

sanitizeXML(String) - Static method in class loci.common.xml.XMLTools

Remove invalid characters from an XML string.

sargs - Variable in class mdbtools.libmdb.MdbColumn

Sargs - Class in mdbtools.libmdb

Sargs() - Constructor for class mdbtools.libmdb.Sargs

SATURATION - Static variable in class loci.formats.in.CellSensReader

SATURATION - Static variable in class loci.formats.tiff.IFD

SATURATION_HIGH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Saturation" tag.

SATURATION_LOW - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Saturation" tag.

SATURATION_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Saturation" tag.

save() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Saves the current state of this object.

save() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Saves the current values and state of the tree.

save(String) - Method in class loci.formats.gui.ImageViewer

Saves the current images to the given destination using the current format writer.

save(String, IFormatWriter) - Method in class loci.formats.gui.ImageViewer

Saves to the given data destination using the specified writer in a separate thread.

save() - Method in class loci.formats.tools.EditTiffG

save - Variable in class loci.plugins.prefs.Option

Whether option state should be saved to ImageJ preferences file.

SAVE_FILE_SIZE - Static variable in class loci.formats.out.AVIWriter

SAVE_JUNK_SIG - Static variable in class loci.formats.out.AVIWriter

SAVE_LIST1_SIZE - Static variable in class loci.formats.out.AVIWriter

SAVE_LIST1_SUBSIZE - Static variable in class loci.formats.out.AVIWriter

SAVE_LIST2_SIZE - Static variable in class loci.formats.out.AVIWriter

SAVE_MOVI - Static variable in class loci.formats.out.AVIWriter

SAVE_STRF_SIZE - Static variable in class loci.formats.out.AVIWriter

SAVE_STRN_POS - Static variable in class loci.formats.out.AVIWriter

saveBytes(int, byte[]) - Method in class loci.formats.FormatWriter

saveBytes(int, byte[], Region) - Method in class loci.formats.FormatWriter

saveBytes(int, byte[]) - Method in interface loci.formats.IFormatWriter

Saves the given image to the current series in the current file.

saveBytes(int, byte[], int, int, int, int) - Method in interface loci.formats.IFormatWriter

Saves the given image tile to the current series in the current file.

saveBytes(int, byte[], Region) - Method in interface loci.formats.IFormatWriter

Saves the given image tile to the current series in the current file.

saveBytes(int, byte[]) - Method in class loci.formats.ImageWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.ImageWriter

saveBytes(int, byte[], Region) - Method in class loci.formats.ImageWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.APNGWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.AVIWriter

saveBytes(int, byte[]) - Method in class loci.formats.out.CellH5Writer

Saves the given image to the specified (possibly already open) file.

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.CellH5Writer

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.EPSWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.ICSWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.ImageIOWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.JavaWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.JPEG2000Writer

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.LegacyQTWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.OMETiffWriter

saveBytes(int, byte[], IFD, int, int, int, int) - Method in class loci.formats.out.OMETiffWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.OMEXMLWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.QTWriter

saveBytes(int, byte[], IFD) - Method in class loci.formats.out.TiffWriter

Saves the given image to the specified (possibly already open) file.

saveBytes(int, byte[], IFD, int, int, int, int) - Method in class loci.formats.out.TiffWriter

Saves the given image to the specified series in the current file.

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.TiffWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.V3DrawWriter

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.WlzWriter

saveBytes(int, byte[], int, int, int, int) - Method in interface loci.formats.services.WlzService

Adds a rectangle of bytes in an x-y plane to the opened Woolz object.

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.services.WlzServiceImpl

saveBytes(int, byte[]) - Method in class loci.formats.WriterWrapper

saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.WriterWrapper

saveBytes(int, byte[], Region) - Method in class loci.formats.WriterWrapper

saveComment(String, String) - Method in class loci.formats.out.OMETiffWriter

saved - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The saved state

saved - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The saved state.

SAVED_INC - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

The increase in length for the arrays to save states

SAVED_LEN - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

The initial length of the arrays to save sates

savedA - Variable in class jj2000.j2k.entropy.encoder.MQCoder

Saved values of the A register.

saveData(String, byte[]) - Method in class loci.tests.IOTester

savedB - Variable in class jj2000.j2k.entropy.encoder.MQCoder

Saved values of the B byte buffer.

savedbLength - Variable in class loci.formats.out.AVIWriter

savedC - Variable in class jj2000.j2k.entropy.encoder.MQCoder

Saved values of the C register.

savedCT - Variable in class jj2000.j2k.entropy.encoder.MQCoder

Saved values of CT counter.

savedDelFF - Variable in class jj2000.j2k.entropy.encoder.MQCoder

Saved values of the delFF (i.e.

saveDefaults() - Method in class loci.plugins.in.ImportProcess

Performed following ImportStep.FILE notification.

savedInPageBreakPreview - Variable in class loci.poi.hssf.record.WindowTwoRecord

savedToMemo - Variable in class loci.formats.Memoizer

Whether the ReaderWrapper.reader instance was saved to a memo file on Memoizer.setId(String).

saveFile(File) - Method in class loci.formats.tools.EditTiffG

saveidx1Length - Variable in class loci.formats.out.AVIWriter

saveImage(int, BufferedImage) - Method in class loci.formats.gui.BufferedImageWriter

Saves the given BufferedImage to the current file.

saveImage(int, BufferedImage, int, int, int, int) - Method in class loci.formats.gui.BufferedImageWriter

Saves the given BufferedImage to the current file.

saveINI(IniList, String) - Method in class loci.common.IniWriter

Saves the given IniList to the given file.

saveINI(IniList, String, boolean, boolean) - Method in class loci.common.IniWriter

Saves the given IniList to the given file.

saveINI(IniList, String, boolean) - Method in class loci.common.IniWriter

Saves the given IniList to the given file.

saveLUTs(ImagePlus, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader

saveMemo() - Method in class loci.formats.Memoizer

Save a reader including all reader wrappers inside a memo file.

saveOption() - Method in class loci.plugins.prefs.BooleanOption

saveOption() - Method in class loci.plugins.prefs.DoubleOption

saveOption() - Method in class loci.plugins.prefs.Option

Saves the option's value to the ImageJ preferences file.

saveOption() - Method in class loci.plugins.prefs.StringOption

saveOptions() - Method in class loci.plugins.prefs.OptionsList

Saves option values to the ImageJ preferences file.

saveOriginalMetadata - Variable in class loci.formats.FormatReader

Whether or not to save proprietary metadata in the MetadataStore.

savePlane(int, Object) - Method in class loci.formats.FormatWriter

savePlane(int, Object, int, int, int, int) - Method in class loci.formats.FormatWriter

savePlane(int, Object, Region) - Method in class loci.formats.FormatWriter

savePlane(int, Object) - Method in interface loci.formats.IFormatWriter

Saves the given image plane to the current series in the current file.

savePlane(int, Object, int, int, int, int) - Method in interface loci.formats.IFormatWriter

Saves the given image plane to the current series in the current file.

savePlane(int, Object, Region) - Method in interface loci.formats.IFormatWriter

Saves the given image plane to the current series in the current file.

savePlane(int, Object) - Method in class loci.formats.ImageWriter

savePlane(int, Object, int, int, int, int) - Method in class loci.formats.ImageWriter

savePlane(int, Object, Region) - Method in class loci.formats.ImageWriter

savePlane(int, Object, int, int, int, int) - Method in class loci.formats.out.ImageIOWriter

savePlane(int, Object, int, int, int, int) - Method in class loci.formats.out.LegacyQTWriter

savePlane(int, Object) - Method in class loci.formats.WriterWrapper

savePlane(int, Object, int, int, int, int) - Method in class loci.formats.WriterWrapper

savePlane(int, Object, Region) - Method in class loci.formats.WriterWrapper

saveReader(IFormatReader) - Method in interface loci.formats.Memoizer.Deser

saveReader(IFormatReader) - Method in class loci.formats.Memoizer.KryoDeser

saveReader(IFormatReader) - Method in class loci.formats.Memoizer.RandomAccessDeser

SaveRecalcRecord - Class in loci.poi.hssf.record

Title: Save Recalc Record

SaveRecalcRecord() - Constructor for class loci.poi.hssf.record.SaveRecalcRecord

SaveRecalcRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SaveRecalcRecord

Constructs an SaveRecalc record and sets its fields appropriately.

saveReleaseVersion(String) - Method in interface loci.formats.Memoizer.Deser

saveReleaseVersion(String) - Method in class loci.formats.Memoizer.KryoDeser

saveReleaseVersion(String) - Method in class loci.formats.Memoizer.RandomAccessDeser

saveRevision(String) - Method in interface loci.formats.Memoizer.Deser

saveRevision(String) - Method in class loci.formats.Memoizer.KryoDeser

saveRevision(String) - Method in class loci.formats.Memoizer.RandomAccessDeser

saveROIs(MetadataStore) - Static method in class loci.plugins.util.ROIHandler

Save ROIs in the ROI manager to the given MetadataStore.

saveStart(File) - Method in interface loci.formats.Memoizer.Deser

saveStart(File) - Method in class loci.formats.Memoizer.KryoDeser

saveStart(File) - Method in class loci.formats.Memoizer.RandomAccessDeser

saveState() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Saves the current state of the MQ coder (just the registers, not the contexts) so that a near optimal length calculation can be performed later.

saveStop() - Method in interface loci.formats.Memoizer.Deser

saveStop() - Method in class loci.formats.Memoizer.KryoDeser

saveStop() - Method in class loci.formats.Memoizer.RandomAccessDeser

saveStream - Variable in class loci.formats.Memoizer.RandomAccessDeser

saveToFile() - Method in class loci.tests.testng.Configuration

saveVersion(Integer) - Method in interface loci.formats.Memoizer.Deser

saveVersion(Integer) - Method in class loci.formats.Memoizer.KryoDeser

saveVersion(Integer) - Method in class loci.formats.Memoizer.RandomAccessDeser

sb - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The subband to which the code-block belongs

sb - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The subband in which this code-block is found

sb - Variable in class loci.formats.gui.ImageViewer

sbandIdx - Variable in class jj2000.j2k.wavelet.Subband

The subband index within its resolution level.

SBIGReader - Class in loci.formats.in

SBIGReader is the file format reader for SBIG files.

SBIGReader() - Constructor for class loci.formats.in.SBIGReader

Constructs a new SBIG reader.

SC_LUT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Sign Coding context lookup table.

SC_LUT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Sign Coding context lookup table.

SC_LUT_BITS - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Number of bits used for the Sign Coding lookup table

SC_LUT_BITS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Number of bits used for the Sign Coding lookup table

SC_LUT_MASK - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The mask to obtain the context index from the 'SC_LUT'

SC_LUT_MASK - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The mask to obtain the context index from the 'SC_LUT'

SC_MASK - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The bit mask to isolate the state bits relative to the sign coding lookup table ('SC_LUT').

SC_MASK - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The bit mask to isolate the state bits relative to the sign coding lookup table ('SC_LUT').

SC_SHIFT_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The shift to obtain the SC index to 'SC_LUT' from the 'state' information, for row 1.

SC_SHIFT_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The shift to obtain the SC index to 'SC_LUT' from the state information, for row 1.

SC_SHIFT_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The shift to obtain the SC index to 'SC_LUT' from the state information, for row 2.

SC_SHIFT_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The shift to obtain the SC index to 'SC_LUT' from the state information, for row 2.

SC_SPRED_SHIFT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The shift to obtain the sign predictor from the 'SC_LUT'.

SC_SPRED_SHIFT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The shift to obtain the sign predictor from the 'SC_LUT'.

scale - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

scale(BufferedImage, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Scales the image using the most appropriate API, with the resultant image having the same color model as the original image.

SCALE - Static variable in class loci.formats.in.FV1000Reader

scale - Variable in class loci.formats.in.NativeQTReader

Amount to subtract from each offset.

scale(double, double) - Method in class loci.plugins.util.RecordedImageProcessor

scale(double, double) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

scale(double, double) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

scale0 - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

scale2D(BufferedImage, int, int, Object, GraphicsConfiguration) - Static method in class loci.formats.gui.AWTImageTools

Scales the image using the Java2D API, with the resultant image optimized for the given graphics configuration.

scale2D(BufferedImage, int, int, Object, ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Scales the image using the Java2D API, with the resultant image having the given color model.

SCALE_BAR - Static variable in class loci.formats.in.LeicaHandler.ROI

SCALE_BAR - Static variable in class loci.formats.in.LIFReader.ROI

SCALE_BAR - Static variable in class loci.formats.in.ZeissLSMReader

scaleAWT(BufferedImage, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Scales the image using the AWT Image API.

scaledFlag - Variable in class ome.jxr.parser.DatastreamParser

scaleFactor - Variable in class loci.formats.in.FakeReader

Scale factor for gradient, if any.

scaleFactor - Variable in class ome.units.unit.Unit

scaleh - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

scalel - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

scaleX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The scaling factors.

scaleX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Source to destination transform

scaleX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The source -> destination transformation

scaleX - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

The scaling factors.

scaleX - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

scaleX - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The source -> destination transformation

scaleX - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The subsampling parameters.

scaleX - Variable in class loci.formats.in.LeicaHandler.ROI

scaleX - Variable in class loci.formats.in.LIFReader.ROI

scaleY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The scaling factors.

scaleY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Source to destination transform

scaleY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The source -> destination transformation

scaleY - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

The scaling factors.

scaleY - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

scaleY - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The source -> destination transformation

scaleY - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The subsampling parameters.

scaleY - Variable in class loci.formats.in.LeicaHandler.ROI

scaleY - Variable in class loci.formats.in.LIFReader.ROI

scaling - Variable in class loci.formats.in.SimplePCITiffReader

scalingBitDepth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

scalings - Variable in class loci.formats.in.ZeissTIFFHandler

scanData(byte[], int, boolean) - Static method in class loci.formats.ImageTools

Scan a plane for the channel min and max values.

scanDim - Variable in class loci.formats.in.ZeissCZIReader

scanDirectory(Location, boolean) - Method in class loci.formats.in.DicomReader

Scan the given directory for files that belong to this dataset.

scanFormat(String, String) - Static method in class loci.formats.in.FV1000Reader

SCANNERSET - Static variable in class loci.formats.in.LeicaReader

ScanrReader - Class in loci.formats.in

ScanrReader is the file format reader for Olympus ScanR datasets.

ScanrReader() - Constructor for class loci.formats.in.ScanrReader

Constructs a new ScanR reader.

ScanrReader.ScanrHandler - Class in loci.formats.in

ScanrReader.ScanrHandler() - Constructor for class loci.formats.in.ScanrReader.ScanrHandler

scanRX - Variable in class loci.formats.in.SDTInfo

scanRY - Variable in class loci.formats.in.SDTInfo

scanValues - Variable in class loci.formats.in.PrairieMetadata

Table of key/value pairs at the top level.

scanw - Variable in class jj2000.j2k.image.DataBlk

The width of the scanlines used to store the data in the array

scanw - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The width of the scanlines used to store the data in the array

scanX - Variable in class loci.formats.in.SDTInfo

scanY - Variable in class loci.formats.in.SDTInfo

ScenarioProtectRecord - Class in loci.poi.hssf.record

Title: Scenario Protect Record

ScenarioProtectRecord() - Constructor for class loci.poi.hssf.record.ScenarioProtectRecord

ScenarioProtectRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ScenarioProtectRecord

Constructs a Protect record and sets its fields appropriately.

SCENE_CAPTURE_TYPE - Static variable in class loci.formats.tiff.IFD

SCENE_CAPTURE_TYPE_LANDSCAPE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SceneCaptureType" tag.

SCENE_CAPTURE_TYPE_NIGHT_SCENE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SceneCaptureType" tag.

SCENE_CAPTURE_TYPE_PORTRAIT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SceneCaptureType" tag.

SCENE_CAPTURE_TYPE_STANDARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SceneCaptureType" tag.

SCENE_TYPE - Static variable in class loci.formats.tiff.IFD

SCENE_TYPE_DSC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SceneType" tag.

scenprotect - Variable in class loci.poi.hssf.model.Sheet

SCHEMA - Static variable in class ome.xml.meta.AbstractOMEXMLMetadata

OME-XML schema location.

SCHEMA_2010_03 - Static variable in class loci.formats.in.LeicaSCNReader

SCHEMA_2010_10 - Static variable in class loci.formats.in.LeicaSCNReader

SCHEMA_LOCATION - Static variable in class ome.specification.XMLWriter

The schema location.

SCHEMA_PATH - Static variable in class loci.formats.services.OMEXMLServiceImpl

schemaPath - Variable in class loci.common.xml.ValidationSAXHandler

SchemaResolver - Class in ome.specification

A resolver for Schema locations that pulls them from jar resources.

SchemaResolver() - Constructor for class ome.specification.SchemaResolver

schemas - Static variable in class loci.common.xml.XMLTools

SCHEMAS - Static variable in class ome.specification.XMLWriter

The schemas.

schemaType - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

schemaType - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

SCLRecord - Class in loci.poi.hssf.record

Specifies the window's zoom magnification.

SCLRecord() - Constructor for class loci.poi.hssf.record.SCLRecord

SCLRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SCLRecord

Constructs a SCL record and sets its fields appropriately.

scoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

scod - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

SCOX_HOR_CB_PART - Static variable in interface jj2000.j2k.codestream.Markers

Horizontal code-block partition origin is at x=1

SCOX_PRECINCT_PARTITION - Static variable in interface jj2000.j2k.codestream.Markers

Precinct used flag

SCOX_USE_EPH - Static variable in interface jj2000.j2k.codestream.Markers

Use end of packet header marker

SCOX_USE_SOP - Static variable in interface jj2000.j2k.codestream.Markers

Use start of packet marker

SCOX_VER_CB_PART - Static variable in interface jj2000.j2k.codestream.Markers

Vertical code-block partition origin is at y=1

screen - Variable in class ome.xml.model.Reagent

Screen - Class in ome.xml.model

Screen() - Constructor for class ome.xml.model.Screen

Default constructor.

Screen(Element, OMEModel) - Constructor for class ome.xml.model.Screen

Constructs Screen recursively from an XML DOM tree.

Screen(Screen) - Constructor for class ome.xml.model.Screen

Copy constructor.

SCREENING - Static variable in class loci.formats.in.FlexReader

screenLinks - Variable in class ome.xml.model.Annotation

screenLinks - Variable in class ome.xml.model.Plate

ScreenReader - Class in loci.formats.in

ScreenReader is a generic reader for files in non-HCS formats that have been organized into a screen.

ScreenReader() - Constructor for class loci.formats.in.ScreenReader

Constructs a new screen reader.

screens - Variable in class ome.xml.model.OME

SDTInfo - Class in loci.formats.in

SDTInfo encapsulates the header information for Becker & Hickl SPC-Image SDT files.

SDTInfo(RandomAccessInputStream, Hashtable) - Constructor for class loci.formats.in.SDTInfo

Constructs a new SDT header by reading values from the given input source, populating the given metadata table.

SDTReader - Class in loci.formats.in

SDTReader is the file format reader for Becker & Hickl SPC-Image SDT files.

SDTReader() - Constructor for class loci.formats.in.SDTReader

Constructs a new SDT reader.

SDTWidgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats SDT support.

SDTWidgets() - Constructor for class loci.plugins.config.SDTWidgets

SearchableWindow - Class in loci.plugins.util

Text panel with search capabilities.

SearchableWindow(String, String, String, int, int) - Constructor for class loci.plugins.util.SearchableWindow

SearchableWindow.SearchBox - Class in loci.plugins.util

SearchableWindow.SearchBox(SearchableWindow) - Constructor for class loci.plugins.util.SearchableWindow.SearchBox

searchBox - Variable in class loci.plugins.util.SearchableWindow.SearchBox

searchForPictures(List, List) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Performs a recursive search for pictures in the given list of escher records.

searchPane - Variable in class loci.plugins.util.SearchableWindow.SearchBox

SECOND - Static variable in class ome.units.UNITS

Section - Class in loci.poi.hpsf

Represents a section in a PropertySet.

Section() - Constructor for class loci.poi.hpsf.Section

Creates an empty and uninitialized Section.

Section(byte[], int) - Constructor for class loci.poi.hpsf.Section

Creates a Section instance from a byte array.

Section.PropertyListEntry - Class in loci.poi.hpsf

Represents an entry in the property list and holds a property's ID and its offset from the section's beginning.

Section.PropertyListEntry() - Constructor for class loci.poi.hpsf.Section.PropertyListEntry

sectionBytes - Variable in class loci.poi.hpsf.MutableSection

Contains the bytes making out the section.

SectionIDMap - Class in loci.poi.hpsf.wellknown

Maps section format IDs to PropertyIDMaps.

SectionIDMap() - Constructor for class loci.poi.hpsf.wellknown.SectionIDMap

sections - Variable in class loci.poi.hpsf.PropertySet

The sections in this PropertySet.

SectorStreamSegmentMapper - Class in com.sun.media.imageio.stream

An implementation of the StreamSegmentMapper interface for segments of equal length.

SectorStreamSegmentMapper(long[], int, int) - Constructor for class com.sun.media.imageio.stream.SectorStreamSegmentMapper

SEED - Static variable in class loci.formats.in.FakeReader

SEED1 - Static variable in class ome.units.quantity.Angle

SEED1 - Static variable in class ome.units.quantity.ElectricPotential

SEED1 - Static variable in class ome.units.quantity.Frequency

SEED1 - Static variable in class ome.units.quantity.Length

SEED1 - Static variable in class ome.units.quantity.Power

SEED1 - Static variable in class ome.units.quantity.Pressure

SEED1 - Static variable in class ome.units.quantity.Temperature

SEED1 - Static variable in class ome.units.quantity.Time

SEED2 - Static variable in class ome.units.quantity.Angle

SEED2 - Static variable in class ome.units.quantity.ElectricPotential

SEED2 - Static variable in class ome.units.quantity.Frequency

SEED2 - Static variable in class ome.units.quantity.Length

SEED2 - Static variable in class ome.units.quantity.Power

SEED2 - Static variable in class ome.units.quantity.Pressure

SEED2 - Static variable in class ome.units.quantity.Temperature

SEED2 - Static variable in class ome.units.quantity.Time

seek(long) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

Invokes the superclass method and sets the position within the memory mapped buffer.

seek(long) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Invokes the superclass method, writes any unwritten data, and sets the channel position to the supplied parameter.

seek(long) - Method in class com.sun.media.imageio.stream.RawImageInputStream

seek(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

seek(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Moves the current position to the given offset at which the next read or write occurs.

seek(int) - Method in interface jj2000.j2k.io.RandomAccessIO

Moves the current position for the next read or write operation to offset.

seek(int) - Method in class jj2000.j2k.util.ISRandomAccessIO

Moves the current position for the next read operation to offset.

seek(long) - Method in class loci.common.ByteArrayHandle

seek(long) - Method in class loci.common.FileHandle

seek(long) - Method in interface loci.common.IRandomAccess

Sets the stream pointer offset, measured from the beginning of this stream, at which the next read or write occurs.

seek(long) - Method in class loci.common.NIOFileHandle

seek(long) - Method in class loci.common.NIOInputStream

Seeks to the given offset within the stream.

seek(long) - Method in class loci.common.RandomAccessInputStream

Seeks to the given offset within the stream.

seek(long) - Method in class loci.common.RandomAccessOutputStream

Seeks to the given offset within the stream.

seek(long) - Method in class loci.common.StreamHandle

seek(long) - Method in class loci.common.URLHandle

seek(long) - Method in class mdbtools.examples.MemoryRandomAccess

seek(long) - Method in class mdbtools.jdbc2.File

seek(long) - Method in interface mdbtools.publicapi.RandomAccess

seekToEntry() - Method in class loci.common.ZipHandle

seekToImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

seekToNextMarker() - Method in class loci.formats.in.ZeissLMSReader

seekToPlaneOffset(long, int, int) - Method in class loci.formats.FormatWriter

Seek to the given (x, y) coordinate of the image that starts at the given offset.

SEG_SYMB_CTXTS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The 4 contexts for the segmentation marker (always the UNIFORM context, UNIF_CTXT)

SEG_SYMBOL - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The 4 symbol segmentation marker (decimal 10, which is binary sequence 1010)

SEG_SYMBOLS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The 4 symbol segmentation marker (1010)

segLen - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

The length of each segment (used with regular termination or in selective arithmetic bypass coding mode)

segLengths - Variable in class jj2000.j2k.codestream.reader.PktInfo

The length of each terminated segment in the packet.

SEGMENTATION_PATH - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

SegmentedImageInputStream - Class in com.sun.media.imageio.stream

A SegmentedImageInputStream provides a view of a subset of another ImageInputStream consiting of a series of segments with given starting positions in the source stream and lengths.

SegmentedImageInputStream(ImageInputStream, StreamSegmentMapper) - Constructor for class com.sun.media.imageio.stream.SegmentedImageInputStream

Constructs a SegmentedImageInputStream given a ImageInputStream as input and an instance of StreamSegmentMapper.

SegmentedImageInputStream(ImageInputStream, long[], int[]) - Constructor for class com.sun.media.imageio.stream.SegmentedImageInputStream

Constructs a SegmentedImageInputStream given a ImageInputStream as input and a list of the starting positions and lengths of the segments of the source stream.

SegmentedImageInputStream(ImageInputStream, long[], int, int) - Constructor for class com.sun.media.imageio.stream.SegmentedImageInputStream

Constructs a SegmentedImageInputStream given a ImageInputStream as input, a list of the starting positions of the segments of the source stream, the common length of each segment, and the total length of the segments.

segmentLength - Variable in class com.sun.media.imageio.stream.SectorStreamSegmentMapper

segmentLength - Variable in class com.sun.media.imageio.stream.StreamSegment

segmentLengths - Variable in class com.sun.media.imageio.stream.StreamSegmentMapperImpl

segmentPositions - Variable in class com.sun.media.imageio.stream.SectorStreamSegmentMapper

segmentPositions - Variable in class com.sun.media.imageio.stream.StreamSegmentMapperImpl

segments - Variable in class loci.formats.in.ZeissCZIReader

SeikoReader - Class in loci.formats.in

SeikoReader is the file format reader for Seiko .xqd/.xqf files.

SeikoReader() - Constructor for class loci.formats.in.SeikoReader

Constructs a new Seiko reader.

seleBand - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Indicates whether subband is selected.

seleBand - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

Indicates whether subband is selected.

Select - Class in mdbtools.dbengine.sql

Select is the parse tree for a select sql statement.

Select() - Constructor for class mdbtools.dbengine.sql.Select

selectConvexHull(int[], double[], boolean[], int, boolean) - Method in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Compute the rate-distorsion slopes and selects those that lie in a convex hull.

selected - Variable in class loci.poi.hssf.record.WindowTwoRecord

SELECTED_CHANNELS - Static variable in class loci.formats.in.CellSensReader

SELECTED_FRAMES - Static variable in class loci.formats.in.CellSensReader

SelectEngine - Class in mdbtools.dbengine

SelectEngine is able to execute a select query TODO replace all runtime exceptions with sql exceptions

SelectEngine(Select) - Constructor for class mdbtools.dbengine.SelectEngine

selection - Variable in class loci.poi.hssf.model.Sheet

SelectionRecord - Class in loci.poi.hssf.record

Title: Selection Record

SelectionRecord() - Constructor for class loci.poi.hssf.record.SelectionRecord

SelectionRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SelectionRecord

Constructs a Selection record and sets its fields appropriately.

SelectionRecord.Reference - Class in loci.poi.hssf.record

SelectionRecord.Reference(RecordInputStream) - Constructor for class loci.poi.hssf.record.SelectionRecord.Reference

selectiveListeners - Variable in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

selectLine(int) - Method in class loci.plugins.util.SearchableWindow

selector - Variable in class loci.common.CBZip2InputStream.Data

selectorMtf - Variable in class loci.common.CBZip2InputStream.Data

SEM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the scanning electron microscopy domain.

semiVolatile - Variable in class loci.poi.hssf.record.formula.AttrPtg

SENSING_METHOD - Static variable in class loci.formats.tiff.IFD

SENSING_METHOD_COLOR_SEQUENTIAL_AREA_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SensingMethod" tag.

SENSING_METHOD_COLOR_SEQUENTIAL_LINEAR_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SensingMethod" tag.

SENSING_METHOD_NOT_DEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SensingMethod" tag.

SENSING_METHOD_ONE_CHIP_COLOR_AREA_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SensingMethod" tag.

SENSING_METHOD_THREE_CHIP_COLOR_AREA_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SensingMethod" tag.

SENSING_METHOD_TRILINEAR_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SensingMethod" tag.

SENSING_METHOD_TWO_CHIP_COLOR_AREA_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SensingMethod" tag.

SENSOR_KEYS - Static variable in class loci.formats.in.ICSReader

sensorHeight - Variable in class loci.formats.in.MRWReader

sensorWidth - Variable in class loci.formats.in.MRWReader

separatedFork - Variable in class loci.formats.in.NativeQTReader

Flag indicating whether the resource and data fork are separated.

separateRefParts(String) - Method in class loci.poi.hssf.util.CellReference

Seperates the row from the columns and returns an array.

seperateAreaRefs(String) - Method in class loci.poi.hssf.util.AreaReference

seperates Area refs in two parts and returns them as seperate elements in a String array

SEQ_FILTERSET - Static variable in class loci.formats.in.LeicaReader

SEQ_FILTERSET_END - Static variable in class loci.formats.in.LeicaReader

SEQ_SCANNERSET - Static variable in class loci.formats.in.LeicaReader

SEQ_SCANNERSET_END - Static variable in class loci.formats.in.LeicaReader

SEQReader - Class in loci.formats.in

SEQReader is the file format reader for Image-Pro Sequence files.

SEQReader() - Constructor for class loci.formats.in.SEQReader

Constructs a new Image-Pro SEQ reader.

seqToUnseq - Variable in class loci.common.CBZip2InputStream.Data

sequence - Variable in class loci.formats.in.PrairieMetadata.Frame

The <Sequence> containing this <Frame>.

sequence(int) - Method in class loci.formats.in.PrairieReader

Gets the first sequence associated with the given series.

sequence(int, int) - Method in class loci.formats.in.PrairieReader

Gets the sequence associated with the given series and time point.

sequence(int, int, int) - Method in class loci.formats.in.PrairieReader

Gets the sequence associated with the given time point and stage position.

SEQUENCE_DELIMINATION - Static variable in class loci.formats.in.DicomReader

sequenceComplete(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

sequences - Variable in class loci.formats.in.PrairieMetadata

<Sequence> elements, keyed on each sequence's cycle.

sequences - Variable in class loci.formats.in.PrairieReader

List of Prairie metadata Sequences, ordered by cycle.

sequenceStarted(ImageReader, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

sequenceValues - Variable in class loci.formats.in.PrairieMetadata.Sequence

Table of key/value pairs for this <Sequence>.

sequential - Variable in class loci.formats.FormatWriter

Whether or not we are writing planes sequentially.

sequential - Variable in class loci.formats.in.LeicaReader

SEQUENTIALSET - Static variable in class loci.formats.in.LeicaReader

sequentialWrite - Variable in class loci.formats.tiff.TiffSaver

ser - Variable in class loci.formats.Memoizer

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherBitmapBlip

Serializes the record to an existing byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherBlipRecord

Serializes the record to an existing byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherBlipWMFRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherBSERecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherChildAnchorRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherClientAnchorRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherClientDataRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherContainerRecord

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherDggRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherDgRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherMetafileBlip

Serializes the record to an existing byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherOptRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherPictBlip

Serializes the record to an existing byte array.

serialize() - Method in class loci.poi.ddf.EscherRecord

Serializes to a new byte array.

serialize(int, byte[]) - Method in class loci.poi.ddf.EscherRecord

Serializes to an existing byte array without serialization listener.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherRecord

Serializes the record to an existing byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherSpgrRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherSpRecord

This method serializes this escher record into a byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.EscherTextboxRecord

Writes this record and any contained records to the supplied byte array.

serialize(int, byte[], EscherSerializationListener) - Method in class loci.poi.ddf.UnknownEscherRecord

Writes this record and any contained records to the supplied byte array.

serialize(int, byte[]) - Method in class loci.poi.hssf.model.Sheet

Serializes all records in the sheet into one big byte array.

serialize(int, byte[]) - Method in class loci.poi.hssf.model.Workbook

Serializes all records int the worksheet section into a big byte array.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

serialize(int, byte[], ValueRecordsAggregate) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.AreaFormatRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.AreaRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.AxisLineFormatRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.AxisOptionsRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.AxisParentRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.AxisRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.AxisUsedRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.BackupRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.BarRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.BeginRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.BlankRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.BOFRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.BookBoolRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.BoolErrRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.BottomMarginRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.BoundSheetRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.CalcCountRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.CalcModeRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ChartFormatRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ChartRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.CodepageRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ColumnInfoRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

serialize() - Method in class loci.poi.hssf.record.ContinueRecord

USE ONLY within "processContinue"

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ContinueRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.CountryRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DataFormatRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DateWindow1904Record

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DatRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DBCellRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DefaultColWidthRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DeltaRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DimensionsRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DrawingGroupRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DrawingRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.DSFRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.EndRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.EndSubRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.EOFRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.EscherAggregate

Serializes this aggregate to a byte array.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ExternSheetRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ExternSheetSubRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ExtSSTRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FilePassRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FileSharingRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FnGroupCountRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FontBasisRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FontIndexRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FontRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FooterRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FormatRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FormulaRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.FrameRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.GridsetRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.GutsRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.HCenterRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.HeaderRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.HideObjRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.IndexRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.InterfaceEndRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.InterfaceHdrRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.IterationRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.LabelRecord

THROWS A RUNTIME EXCEPTION..

serialize(int, byte[]) - Method in class loci.poi.hssf.record.LabelSSTRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.LeftMarginRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.LegendRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.LineFormatRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.LinkedDataRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.MergeCellsRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.MMSRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.MulBlankRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.MulRKRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.NameRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.NoteRecord

Serialize the record data into the supplied array of bytes

serialize(int, byte[]) - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Serialize the record data into the supplied array of bytes

serialize(int, byte[]) - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.NumberRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ObjectLinkRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ObjectProtectRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ObjRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PageBreakRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PaletteRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PaneRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PasswordRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PasswordRev4Record

serialize(byte[], int) - Method in class loci.poi.hssf.record.PColor

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PlotAreaRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PlotGrowthRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PrecisionRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PrintGridlinesRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PrintHeadersRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.PrintSetupRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ProtectionRev4Record

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ProtectRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.RecalcIdRecord

serialize() - Method in class loci.poi.hssf.record.Record

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.Record

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.RefModeRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.RefreshAllRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.RightMarginRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.RKRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.RowRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SaveRecalcRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ScenarioProtectRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SCLRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SelectionRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SeriesIndexRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SeriesListRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SeriesRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SeriesTextRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SharedFormulaRecord

spit the record out AS IS.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SSTRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SSTSerializer

Create a byte array consisting of an SST record and any required Continue records, ready to be written out.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.StringRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.StyleRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.SupBookRecord

called by the class that is responsible for writing this sucker.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.TabIdRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.TextObjectRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.TextRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.TickRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.TopMarginRecord

serialize(UnicodeString.UnicodeRecordStats, int, byte[]) - Method in class loci.poi.hssf.record.UnicodeString

serialize(int, byte[]) - Method in class loci.poi.hssf.record.UnitsRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.UnknownRecord

spit the record out AS IS.

serialize(int, byte[]) - Method in class loci.poi.hssf.record.UseSelFSRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.ValueRangeRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.VCenterRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.WindowOneRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.WindowProtectRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.WindowTwoRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.WriteAccessRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.WriteProtectRecord

serialize(int, byte[]) - Method in class loci.poi.hssf.record.WSBoolRecord

serializeCellRow(int, int, byte[]) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Serializes the cells that are allocated to a certain row range

serializeComplexPart(byte[], int) - Method in class loci.poi.ddf.EscherComplexProperty

Serializes the complex part of this property

serializeComplexPart(byte[], int) - Method in class loci.poi.ddf.EscherProperty

Escher properties consist of a simple fixed length part and a complex variable length part.

serializeComplexPart(byte[], int) - Method in class loci.poi.ddf.EscherSimpleProperty

Escher properties consist of a simple fixed length part and a complex variable length part.

SERIALIZED_MASK - Static variable in class loci.formats.in.CellSensReader

serializeField(int, byte[]) - Method in interface loci.poi.hssf.record.CustomField

Converts this field to it's byte array form.

serializeField(int, byte[]) - Method in class loci.poi.hssf.record.LinkedDataFormulaField

serializeIndexRecord(int, int, byte[]) - Method in class loci.poi.hssf.model.Sheet

serializePtgStack(Stack, byte[], int) - Static method in class loci.poi.hssf.record.formula.Ptg

serializeRowBlock(int, int, byte[]) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Serializes a block of the rows

serializeSimplePart(byte[], int) - Method in class loci.poi.ddf.EscherArrayProperty

Serializes the simple part of this property.

serializeSimplePart(byte[], int) - Method in class loci.poi.ddf.EscherComplexProperty

Serializes the simple part of this property.

serializeSimplePart(byte[], int) - Method in class loci.poi.ddf.EscherProperty

Escher properties consist of a simple fixed length part and a complex variable length part.

serializeSimplePart(byte[], int) - Method in class loci.poi.ddf.EscherSimpleProperty

Serialize the simple part of the escher record.

serialNumber - Variable in class loci.formats.in.BioRadSCNReader

serialNumber - Variable in class loci.formats.in.LIFReader

serialNumber - Variable in class loci.formats.in.NDPIReader

serialNumber - Variable in class ome.xml.model.ManufacturerSpec

serialVersionUID - Static variable in exception loci.common.enumeration.EnumException

serialVersionUID - Static variable in exception loci.common.services.DependencyException

Serial for this version.

serialVersionUID - Static variable in exception loci.common.services.ServiceException

Serial for this version.

serialVersionUID - Static variable in exception ome.jxr.JXRException

serialVersionUID - Static variable in class org.libjpegturbo.turbojpeg.TJTransform

series - Variable in class loci.formats.FileStitcher

The number of the current series (non flat).

series - Variable in class loci.formats.FormatReader

The number of the current series (non flat).

series - Variable in class loci.formats.FormatWriter

Current series.

series - Variable in class loci.formats.gui.DataConverter

SERIES - Static variable in class loci.formats.in.LeicaReader

IFD tags.

series - Variable in class loci.formats.in.OBFReader.Frame

series - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

series - Variable in class loci.formats.in.ZeissCZIReader.Coordinate

series - Variable in class loci.plugins.macro.LociFunctions

series - Variable in class loci.plugins.util.BFVirtualStack

SERIES - Static variable in class loci.tests.testng.Configuration

SERIES_COUNT - Static variable in class loci.tests.testng.Configuration

SERIES_NAME - Static variable in class loci.formats.FormatTools

SERIES_NUM - Static variable in class loci.formats.FormatTools

Patterns to be used when constructing a pattern for output filenames.

SeriesChartGroupIndexRecord - Class in loci.poi.hssf.record

The series chart group index record stores the index to the CHARTFORMAT record (0 based).

SeriesChartGroupIndexRecord() - Constructor for class loci.poi.hssf.record.SeriesChartGroupIndexRecord

SeriesChartGroupIndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Constructs a SeriesChartGroupIndex record and sets its fields appropriately.

seriesCount - Variable in class loci.formats.in.CellH5Reader

seriesCount - Variable in class loci.formats.in.ImarisHDFReader

seriesCount - Variable in class loci.tests.testng.OpenBytesPerformanceTest

seriesCounts - Variable in class loci.formats.in.ZeissLSMReader

seriesDescriptions - Variable in class loci.formats.in.LeicaReader

SeriesDialog - Class in loci.plugins.in

Bio-Formats Importer series chooser dialog box.

SeriesDialog(ImportProcess) - Constructor for class loci.plugins.in.SeriesDialog

Creates a series chooser dialog for the Bio-Formats Importer.

seriesFiles - Variable in class loci.formats.in.ScanrReader

seriesIndex - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

seriesIndex - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

SeriesIndexRecord - Class in loci.poi.hssf.record

links a series to its position in the series list.

SeriesIndexRecord() - Constructor for class loci.poi.hssf.record.SeriesIndexRecord

SeriesIndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SeriesIndexRecord

Constructs a SeriesIndex record and sets its fields appropriately.

seriesInfo - Variable in class loci.formats.in.MNGReader

seriesLabels - Variable in class loci.plugins.in.ImportProcess

A descriptive label for each series.

SeriesLabelsRecord - Class in loci.poi.hssf.record

The series label record defines the type of label associated with the data format record.

SeriesLabelsRecord() - Constructor for class loci.poi.hssf.record.SeriesLabelsRecord

SeriesLabelsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SeriesLabelsRecord

Constructs a SeriesLabels record and sets its fields appropriately.

SeriesListRecord - Class in loci.poi.hssf.record

The series list record defines the series displayed as an overlay to the main chart record.

SeriesListRecord() - Constructor for class loci.poi.hssf.record.SeriesListRecord

SeriesListRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SeriesListRecord

Constructs a SeriesList record and sets its fields appropriately.

seriesMetadata - Variable in class loci.formats.CoreMetadata

Non-core metadata associated with this series.

seriesNames - Variable in class loci.formats.in.LeicaReader

seriesOn - Variable in class loci.plugins.in.ImporterOptions

SeriesRecord - Class in loci.poi.hssf.record

The series record describes the overall data for a series.

SeriesRecord() - Constructor for class loci.poi.hssf.record.SeriesRecord

SeriesRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SeriesRecord

Constructs a Series record and sets its fields appropriately.

seriesRow - Variable in class loci.formats.gui.DataConverter

seriesStream - Variable in class loci.formats.in.BrukerReader

SeriesTextRecord - Class in loci.poi.hssf.record

Defines a series name NOTE: This source is automatically generated please do not modify this file.

SeriesTextRecord() - Constructor for class loci.poi.hssf.record.SeriesTextRecord

SeriesTextRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SeriesTextRecord

Constructs a SeriesText record and sets its fields appropriately.

SeriesToChartGroupRecord - Class in loci.poi.hssf.record

Indicates the chart-group index for a series.

SeriesToChartGroupRecord() - Constructor for class loci.poi.hssf.record.SeriesToChartGroupRecord

SeriesToChartGroupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SeriesToChartGroupRecord

Constructs a SeriesToChartGroup record and sets its fields appropriately.

seriesToCoreIndex(int) - Method in class loci.formats.FileStitcher

seriesToCoreIndex(int) - Method in class loci.formats.FormatReader

seriesToCoreIndex(int) - Method in interface loci.formats.IFormatReader

Returns the first core index corresponding to the specified series.

seriesToCoreIndex(int) - Method in class loci.formats.ImageReader

seriesToCoreIndex(int) - Method in class loci.formats.in.FilePatternReader

seriesToCoreIndex(int) - Method in class loci.formats.ReaderWrapper

seriesToWellArea(int) - Method in class loci.formats.in.CellVoyagerReader

Returns the well index (in the field CellVoyagerReader.wells) and the area index (in the field CellVoyagerReader.WellInfo.areas corresponding to the specified series.

serverMap - Static variable in class loci.formats.in.FlexReader

Mapping from server names stored in the .mea file to actual server names.

Service - Interface in loci.common.services

service - Variable in class loci.formats.codec.JPEG2000Codec

service - Variable in class loci.formats.codec.LuraWaveCodec

service - Variable in class loci.formats.FormatReader

service - Variable in class loci.formats.in.CellWorxReader

service - Variable in class loci.formats.in.HamamatsuVMSReader

service - Variable in class loci.formats.in.NDPIReader

service - Variable in class loci.formats.in.OMETiffReader

service - Variable in class loci.formats.in.TileJPEGReader

service - Variable in class loci.formats.Memoizer

service - Variable in class loci.formats.out.OMETiffWriter

service - Variable in class loci.formats.out.OMEXMLWriter

service - Variable in class loci.tests.testng.TiffWriterTest

Service to create the metadata store.

ServiceException - Exception in loci.common.services

Exception thrown when there is an error within a given service.

ServiceException(String) - Constructor for exception loci.common.services.ServiceException

Default constructor.

ServiceException(String, Throwable) - Constructor for exception loci.common.services.ServiceException

Default constructor.

ServiceException(Throwable) - Constructor for exception loci.common.services.ServiceException

Default constructor.

ServiceFactory - Class in loci.common.services

Runtime instantiation of services.

ServiceFactory() - Constructor for class loci.common.services.ServiceFactory

Constructor loading service configuration from the default location.

ServiceFactory(String) - Constructor for class loci.common.services.ServiceFactory

Constructor loading service configuration from a given location.

serviceRegistry - Variable in class loci.formats.services.JAIIIOServiceImpl

services - Variable in class loci.common.services.ServiceFactory

Set of available services.

set(List<T>, int, T, T) - Method in class loci.plugins.in.ImporterOptions

set(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

set(int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

set(int) - Method in class loci.poi.util.BitField

Set the bits.

set(byte) - Method in class loci.poi.util.ByteField

set the ByteField's current value

set(byte, byte[]) - Method in class loci.poi.util.ByteField

set the ByteField's current value and write it to a byte array

set(int, double) - Method in class loci.poi.util.DoubleList

Replaces the element at the specified position in this list with the specified element

set(int, int, double) - Method in class loci.poi.util.DoubleList2d

set(int) - Method in class loci.poi.util.IntegerField

set the IntegerField's current value

set(int, byte[]) - Method in class loci.poi.util.IntegerField

set the IntegerField's current value and write it to a byte array

set(int, int) - Method in class loci.poi.util.IntList

Replaces the element at the specified position in this list with the specified element

set(int, int, int) - Method in class loci.poi.util.IntList2d

set(int, int, Object) - Method in class loci.poi.util.List2d

set(long) - Method in class loci.poi.util.LongField

set the LongField's current value

set(long, byte[]) - Method in class loci.poi.util.LongField

set the LongField's current value and write it to a byte array

set(short) - Method in class loci.poi.util.ShortField

set the ShortField's current value

set(short, byte[]) - Method in class loci.poi.util.ShortField

set the ShortField's current value and write it to a byte array

set(int, short) - Method in class loci.poi.util.ShortList

Replaces the element at the specified position in this list with the specified element

set(int, T) - Method in class ome.xml.model.ReferenceList

set123Prefix(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set some old holdover from lotus 123.

setA00(Double) - Method in class ome.xml.model.AffineTransform

setA01(Double) - Method in class ome.xml.model.AffineTransform

setA02(Double) - Method in class ome.xml.model.AffineTransform

setA10(Double) - Method in class ome.xml.model.AffineTransform

setA11(Double) - Method in class ome.xml.model.AffineTransform

setA12(Double) - Method in class ome.xml.model.AffineTransform

setAccessibilityIgnored(boolean) - Method in class loci.common.ReflectedUniverse

Deprecated.

Sets whether access modifiers (protected, private, etc.) are ignored.

setAcquisitionDate(Timestamp) - Method in class ome.xml.model.Image

setAcquisitionMode(AcquisitionMode) - Method in class ome.xml.model.Channel

setActiveCellCol(short) - Method in class loci.poi.hssf.model.Sheet

Sets the active column

setActiveCellCol(short) - Method in class loci.poi.hssf.record.SelectionRecord

set the active cell's col

setActiveCellRef(short) - Method in class loci.poi.hssf.record.SelectionRecord

set the active cell's reference number

setActiveCellRow(int) - Method in class loci.poi.hssf.model.Sheet

Sets the active row

setActiveCellRow(int) - Method in class loci.poi.hssf.record.SelectionRecord

set the active cell's row

setActivePane(short) - Method in class loci.poi.hssf.record.PaneRecord

Set the active pane field for the Pane record.

setActiveSrcHeight(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the activeSrcHeight field.

setActiveSrcHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setActiveSrcMinX(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the activeSrcMinX field.

setActiveSrcMinX(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setActiveSrcMinY(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the activeSrcMinY field.

setActiveSrcMinY(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setActiveSrcWidth(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the activeSrcWidth field.

setActiveSrcWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setAddMenuCount(byte) - Method in class loci.poi.hssf.record.MMSRecord

set number of add menu options (set to 0)

setAdtlDiag(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set for diagonal borders? No idea (its a palette color for the other function we didn't know what was?)

setAdtlDiagLineStyle(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the diagonal border line style? Who the heck ever heard of a diagonal border?

setAdtlFillPattern(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the fill pattern

setAdtlPaletteOptions(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the additional palette options bitmask (see individual bitsetter methods that reference this method)

setAirPressure(Pressure) - Method in class ome.xml.model.ImagingEnvironment

setAlignment(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the horizontal alignment of the cell.

setAlignment(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the type of horizontal alignment for the cell

setAlignmentOptions(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the alignment options bitmask.

setAlignROI(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets alignROI

setAllowOpenFiles(boolean) - Method in class loci.formats.ImageReader

Toggles whether or not file system access is allowed when doing type detection.

setAlternateExpression(boolean) - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternate expression evaluation is on

setAlternateFormula(boolean) - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternative formula entry is on

setAlternativeExpression(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternate expression evaluation is on

setAlternativeFormula(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternative formula entry is on

setAmplificationGain(Double) - Method in class ome.xml.model.Detector

setAnchor(int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFChildAnchor

setAnchor(short, int, int, int, short, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Dets the top-left and bottom-right coordinates of the anchor.

setAnchor(HSSFAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShape

Sets a particular anchor.

setAnchorId(short) - Method in class loci.poi.hssf.record.ObjectLinkRecord

Set the anchor id field for the ObjectLink record.

setAnchorType(int) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Sets the anchor type

setAnnotator(String) - Method in class ome.xml.model.Annotation

setAntialiasedText(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

setApplicationName(String) - Method in class loci.poi.hpsf.SummaryInformation

Sets the application name.

setArabic(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

is this arabic?

setArcAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setArcAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setArcAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setArcAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Arc.

setArcAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setArcID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setArcID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setArcID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setArcID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Arc.

setArcID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setArcLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setArcLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setArcLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setArcLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of Arc.

setArcLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setArcManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setArcManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setArcManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setArcManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of Arc.

setArcManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setArcModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setArcModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setArcModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setArcModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of Arc.

setArcModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setArcPower(Power, int, int) - Method in class ome.xml.meta.AggregateMetadata

setArcPower(Power, int, int) - Method in class ome.xml.meta.DummyMetadata

setArcPower(Power, int, int) - Method in class ome.xml.meta.FilterMetadata

setArcPower(Power, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Power property of Arc.

setArcPower(Power, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setArcSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setArcSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setArcSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setArcSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of Arc.

setArcSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setArcType(ArcType, int, int) - Method in class ome.xml.meta.AggregateMetadata

setArcType(ArcType, int, int) - Method in class ome.xml.meta.DummyMetadata

setArcType(ArcType, int, int) - Method in class ome.xml.meta.FilterMetadata

setArcType(ArcType, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Arc.

setArcType(ArcType, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setArea(String) - Method in class loci.poi.hssf.record.formula.Area3DPtg

setArea(String) - Method in class loci.poi.hssf.record.formula.Ref3DPtg

setAreaReference(String) - Method in class loci.poi.hssf.record.NameRecord

sets the reference , the area only (range)

setArgument(Object) - Method in class mdbtools.dbengine.sql.FunctionDef

setArrayData(byte[], int) - Method in class loci.poi.ddf.EscherArrayProperty

We have this method because the way in which arrays in escher works is screwed for seemly arbitary reasons.

setAsActiveCell() - Method in class loci.poi.hssf.usermodel.HSSFCell

Sets this cell as the active cell for the worksheet

setAscending(boolean) - Method in class mdbtools.dbengine.sql.OrderBy

setAssumeEqualStrips(boolean) - Method in class loci.formats.tiff.TiffParser

Sets whether or not to assume that strips are of equal size.

setAttenuation(PercentFraction) - Method in class ome.xml.model.LightSourceSettings

setAttributes(short) - Method in class loci.poi.hssf.record.FontRecord

set the font attributes (see individual bit setters that reference this method)

setAuthor(String) - Method in class loci.poi.hpsf.SummaryInformation

Sets the author.

setAuthor(String) - Method in class loci.poi.hssf.record.NoteRecord

Name of the original comment author

setAuthor(String) - Method in class loci.poi.hssf.usermodel.HSSFComment

Name of the original comment author

setAuto(boolean) - Method in class loci.poi.hssf.record.LineFormatRecord

Sets the auto field value.

setAutoBackground(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the auto background field value.

setAutobreaks(boolean) - Method in class loci.poi.hssf.record.WSBoolRecord

show automatic page breaks or not

setAutobreaks(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

show automatic page breaks or not

setAutoColor(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the auto color field value.

setAutoContinue(boolean) - Method in class loci.poi.hssf.record.RecordInputStream

setAutofill(boolean) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Sets the autofill field value.

setAutoGeneratedText(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the auto generated text field value.

setAutoLabelDeleted(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the auto label deleted field value.

setAutoline(boolean) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Sets the autoline field value.

setAutomatic(boolean) - Method in class loci.poi.hssf.record.AreaFormatRecord

Sets the automatic field value.

setAutomaticallyParseMasks(boolean) - Method in class loci.formats.in.MIASReader

Toggle whether or not Mask pixel data should be parsed in setId.

setAutomaticCategoryCrossing(boolean) - Method in class loci.poi.hssf.record.ValueRangeRecord

Sets the automatic category crossing field value.

setAutomaticMajor(boolean) - Method in class loci.poi.hssf.record.ValueRangeRecord

Sets the automatic major field value.

setAutomaticMaximum(boolean) - Method in class loci.poi.hssf.record.ValueRangeRecord

Sets the automatic maximum field value.

setAutomaticMinimum(boolean) - Method in class loci.poi.hssf.record.ValueRangeRecord

Sets the automatic minimum field value.

setAutomaticMinor(boolean) - Method in class loci.poi.hssf.record.ValueRangeRecord

Sets the automatic minor field value.

setAutoPlotArea(boolean) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Sets the auto plot area field value.

setAutoPosition(boolean) - Method in class loci.poi.hssf.record.FrameRecord

Sets the auto position field value.

setAutoPosition(boolean) - Method in class loci.poi.hssf.record.LegendRecord

Sets the auto position field value.

setAutorotate(boolean) - Method in class loci.poi.hssf.record.TickRecord

Sets the autorotate field value.

setAutoscale(boolean) - Method in class loci.plugins.in.ImporterOptions

setAutoSeries(boolean) - Method in class loci.poi.hssf.record.LegendRecord

Sets the auto series field value.

setAutoSize(boolean) - Method in class loci.poi.hssf.record.FrameRecord

Sets the auto size field value.

setAutoTextBackground(boolean) - Method in class loci.poi.hssf.record.TickRecord

Sets the auto text background field value.

setAutoTextColor(boolean) - Method in class loci.poi.hssf.record.TickRecord

Sets the auto text color field value.

setAutoThreshold(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

setAutoXPositioning(boolean) - Method in class loci.poi.hssf.record.LegendRecord

Sets the auto x positioning field value.

setAutoYPositioning(boolean) - Method in class loci.poi.hssf.record.LegendRecord

Sets the auto y positioning field value.

setAxisType(short) - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Set the axis type field for the AxisLineFormat record.

setAxisType(short) - Method in class loci.poi.hssf.record.AxisParentRecord

Set the axis type field for the AxisParent record.

setAxisType(short) - Method in class loci.poi.hssf.record.AxisRecord

Set the axis type field for the Axis record.

setAxisTypes(int[]) - Method in class loci.formats.AxisGuesser

Sets the axis type for each dimensional block.

setAxisTypes(int[]) - Method in class loci.formats.FileStitcher

Sets the axis type for each dimensional block.

setBackcolorIndex(short) - Method in class loci.poi.hssf.record.AreaFormatRecord

Set the backcolor index field for the AreaFormat record.

setBackground(byte) - Method in class loci.poi.hssf.record.TickRecord

Set the background field for the Tick record.

setBackground(Color) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setBackground(Color) - Method in class loci.poi.hssf.usermodel.EscherGraphics

setBackground(Color) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setBackgroundColor(int) - Method in class loci.poi.hssf.record.AreaFormatRecord

Set the background color field for the AreaFormat record.

setBackgroundValue(double) - Method in class loci.plugins.util.RecordedImageProcessor

setBackslashContinuesLine(boolean) - Method in class loci.common.IniParser

Set whether or not a '\' at the end of a line signifies that the line continues on the following line.

setBackup(short) - Method in class loci.poi.hssf.record.BackupRecord

set the backup flag (0,1)

setBackupFlag(boolean) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

determine whether the Excel GUI will backup the workbook when saving.

setBackuppos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

setBadFontHeight(boolean) - Method in class loci.poi.hssf.record.RowRecord

set whether the font and row height are not compatible

setBarSpace(short) - Method in class loci.poi.hssf.record.BarRecord

Set the bar space field for the Bar record.

setBaseUnit(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Set the base unit field for the AxisOptions record.

setBAT(BlockAllocationTableReader) - Method in interface loci.poi.poifs.storage.BlockList

set the associated BlockAllocationTable

setBAT(BlockAllocationTableReader) - Method in class loci.poi.poifs.storage.BlockListImpl

set the associated BlockAllocationTable

setBATBlocks(int, int, int) - Method in class loci.poi.poifs.storage.HeaderBlockWriter

Set BAT block parameters.

setBigEndian(Boolean) - Method in class ome.xml.model.BinData

setBigEndian(Boolean) - Method in class ome.xml.model.Pixels

setBigTiff(boolean) - Method in class loci.formats.out.TiffWriter

Sets whether or not BigTIFF files should be written.

setBigTiff(boolean) - Method in class loci.formats.tiff.TiffSaver

Sets whether or not BigTIFF data should be written.

setBinaryFile(BinaryFile) - Method in class ome.xml.model.FileAnnotation

setBinaryFileFileName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setBinaryFileFileName(String, int) - Method in class ome.xml.meta.DummyMetadata

setBinaryFileFileName(String, int) - Method in class ome.xml.meta.FilterMetadata

setBinaryFileFileName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the FileName property of BinaryFile.

setBinaryFileFileName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBinaryFileMIMEType(String, int) - Method in class ome.xml.meta.AggregateMetadata

setBinaryFileMIMEType(String, int) - Method in class ome.xml.meta.DummyMetadata

setBinaryFileMIMEType(String, int) - Method in class ome.xml.meta.FilterMetadata

setBinaryFileMIMEType(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the MIMEType property of BinaryFile.

setBinaryFileMIMEType(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBinaryFileSize(NonNegativeLong, int) - Method in class ome.xml.meta.AggregateMetadata

setBinaryFileSize(NonNegativeLong, int) - Method in class ome.xml.meta.DummyMetadata

setBinaryFileSize(NonNegativeLong, int) - Method in class ome.xml.meta.FilterMetadata

setBinaryFileSize(NonNegativeLong, int) - Method in interface ome.xml.meta.MetadataStore

Set the Size property of BinaryFile.

setBinaryFileSize(NonNegativeLong, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBinaryOnly(BinaryOnly) - Method in class ome.xml.model.OME

setBinaryOnlyMetadataFile(String) - Method in class ome.xml.meta.AggregateMetadata

setBinaryOnlyMetadataFile(String) - Method in class ome.xml.meta.DummyMetadata

setBinaryOnlyMetadataFile(String) - Method in class ome.xml.meta.FilterMetadata

setBinaryOnlyMetadataFile(String) - Method in interface ome.xml.meta.MetadataStore

Set the MetadataFile property of BinaryOnly.

setBinaryOnlyMetadataFile(String) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBinaryOnlyUUID(String) - Method in class ome.xml.meta.AggregateMetadata

setBinaryOnlyUUID(String) - Method in class ome.xml.meta.DummyMetadata

setBinaryOnlyUUID(String) - Method in class ome.xml.meta.FilterMetadata

setBinaryOnlyUUID(String) - Method in interface ome.xml.meta.MetadataStore

Set the UUID property of BinaryOnly.

setBinaryOnlyUUID(String) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBinData(BinData) - Method in class ome.xml.model.BinaryFile

setBinData(int, BinData) - Method in class ome.xml.model.Mask

setBinData(int, BinData) - Method in class ome.xml.model.Pixels

setBinning(Binning) - Method in class ome.xml.model.DetectorSettings

setBitOffset(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

setBitsPerSample(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the bitsPerSample field.

setBitsPerSample(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setBlack(int) - Method in class loci.poi.util.BinaryTree.Node

make this node black

setBlipRecord(EscherBlipRecord) - Method in class loci.poi.ddf.EscherBSERecord

setBlipTypeMacOS(byte) - Method in class loci.poi.ddf.EscherBSERecord

Set the expected MacOS blip type

setBlipTypeWin32(byte) - Method in class loci.poi.ddf.EscherBSERecord

Set the expected win32 blip type

setBlocks(ListManagedBlock[]) - Method in class loci.poi.poifs.storage.BlockListImpl

provide blocks to manage

setBoldWeight(short) - Method in class loci.poi.hssf.record.FontRecord

set the bold weight for this font (100-1000dec or 0x64-0x3e8).

setBoldweight(short) - Method in class loci.poi.hssf.usermodel.HSSFFont

set the boldness to use

setBoolean(int, boolean) - Method in class loci.poi.util.BitField

Set a boolean BitField

setBooleanAnnotation(int, BooleanAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setBooleanAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setBooleanAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setBooleanAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setBooleanAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of BooleanAnnotation.

setBooleanAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBooleanAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setBooleanAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setBooleanAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setBooleanAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of BooleanAnnotation.

setBooleanAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBooleanAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setBooleanAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setBooleanAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setBooleanAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of BooleanAnnotation.

setBooleanAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBooleanAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setBooleanAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setBooleanAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setBooleanAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of BooleanAnnotation.

setBooleanAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBooleanAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setBooleanAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setBooleanAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setBooleanAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of BooleanAnnotation.

setBooleanAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBooleanAnnotationValue(Boolean, int) - Method in class ome.xml.meta.AggregateMetadata

setBooleanAnnotationValue(Boolean, int) - Method in class ome.xml.meta.DummyMetadata

setBooleanAnnotationValue(Boolean, int) - Method in class ome.xml.meta.FilterMetadata

setBooleanAnnotationValue(Boolean, int) - Method in interface ome.xml.meta.MetadataStore

Set the Value property of BooleanAnnotation.

setBooleanAnnotationValue(Boolean, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setBorder(boolean) - Method in class loci.poi.hssf.record.DatRecord

Sets the border field value.

setBorderBottom(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the border line style for the bottom border

setBorderBottom(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the type of border to use for the bottom border of the cell

setBorderLeft(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the borderline style for the left border

setBorderLeft(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the type of border to use for the left border of the cell

setBorderOptions(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the border options bitmask (see the corresponding bitsetter methods that reference back to this one)

setBorderRight(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the border line style for the right border

setBorderRight(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the type of border to use for the right border of the cell

setBorderTop(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the border line style for the top border

setBorderTop(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the type of border to use for the top border of the cell

setBorderType(short) - Method in class loci.poi.hssf.record.FrameRecord

Set the border type field for the Frame record.

setBottomBorderColor(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the color to use for the bottom border

setBottomBorderPaletteIdx(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the palette index for the bottom border

setBoundaryHeight(int) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set the boundary height of the metafile drawing commands

setBoundaryLeft(int) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set the left boundary of the metafile drawing commands

setBoundaryTop(int) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set the top boundary of the metafile drawing commands

setBoundaryWidth(int) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set the boundary width of the metafile drawing commands

setBounds(Rectangle) - Method in class loci.poi.ddf.EscherMetafileBlip

setBounds(Rectangle) - Method in class loci.poi.ddf.EscherPictBlip

setBspos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

setBubbleSeriesType(short) - Method in class loci.poi.hssf.record.SeriesRecord

Set the bubble series type field for the Series record.

setBucketOffsets(int[], int[]) - Method in class loci.poi.hssf.record.ExtSSTRecord

setBucketRecordOffset(short) - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

setBuild(short) - Method in class loci.poi.hssf.record.BOFRecord

build that wrote this file

setBuildYear(short) - Method in class loci.poi.hssf.record.BOFRecord

Year of the build that wrote this file

setBuiltin(byte) - Method in class loci.poi.hssf.record.StyleRecord

if this is a builtin style set teh number of the built in style

setBypass(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets bypass

setByte(byte) - Method in class loci.poi.util.BitField

Set the bits.

setByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer

Sets the underlying buffer byte array to the given one, with the given offset and length.

setByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput

Resets the underlying byte input to start a new segment.

setByteBoolean(byte, boolean) - Method in class loci.poi.util.BitField

Set a boolean BitField

setByteCount(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the byteCount field.

setByteCount(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setByteCount(int) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the byte count.

setByteOrder(ByteOrder) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

setByteOrder(ByteOrder) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

setByteOrder(ByteOrder) - Method in class com.sun.media.imageio.stream.RawImageInputStream

setByteOrder(int) - Method in class loci.poi.hpsf.MutablePropertySet

Sets the "byteOrder" property.

setByteOrder(int) - Method in class loci.poi.hpsf.SpecialPropertySet

setBytes(byte[]) - Method in class loci.poi.hpsf.ClassID

Sets the bytes making out the class ID.

setCacheDirectoryTimeout(double) - Static method in class loci.common.Location

Cache directory listings for this many seconds before relisting.

setCacheOfSavedSize(int) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set the cache of the saved size

setCacheOfSize(int) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set the cache of the metafile size

setCalcMode(short) - Method in class loci.poi.hssf.record.CalcModeRecord

set the calc mode flag for formulas

setCalibratedMagnification(Double) - Method in class ome.xml.model.Objective

setCalibrationTable(float[]) - Method in class loci.plugins.util.RecordedImageProcessor

setCanChangePattern(boolean) - Method in class loci.formats.FileStitcher

setCanDoUpgradeCheck(boolean) - Method in class loci.formats.UpgradeChecker

Set whether or not we are ever allowed to perform an upgrade check.

setCanLookForND(boolean) - Method in class loci.formats.in.MetamorphReader

setCapacity(int) - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

changes the default capacity (10000) to handle larger files

setCategory(int) - Method in class loci.formats.in.BaseZeissReader.Tag

setCategory(String) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the category.

setCategoryAxisCross(double) - Method in class loci.poi.hssf.record.ValueRangeRecord

Set the category axis cross field for the ValueRange record.

setCategoryDataType(short) - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Set the category data type field for the DefaultDataLabelTextProperties record.

setCategoryDataType(short) - Method in class loci.poi.hssf.record.SeriesRecord

Set the category data type field for the Series record.

setCategorySpace(short) - Method in class loci.poi.hssf.record.BarRecord

Set the category space field for the Bar record.

setCausalCXInfo(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets causalCXInfo

setCBegin(int, int) - Method in class loci.plugins.in.ImporterOptions

setCellComment(HSSFComment) - Method in class loci.poi.hssf.usermodel.HSSFCell

Assign a comment to this cell

setCellErrorValue(byte) - Method in class loci.poi.hssf.usermodel.HSSFCell

set a error value for the cell

setCellFormula(String) - Method in class loci.poi.hssf.usermodel.HSSFCell

setCellNum(short) - Method in class loci.poi.hssf.usermodel.HSSFCell

set the cell's number within the row (0 based)

setCellOptions(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

sets the options bitmask - you can also use corresponding option bit setters (see other methods that reference this one)

setCellStyle(HSSFCellStyle) - Method in class loci.poi.hssf.usermodel.HSSFCell

set the style for the cell.

setCellType(int) - Method in class loci.poi.hssf.usermodel.HSSFCell

set the cells type (numeric, formula or string)

setCellType(int, boolean, int, short, short) - Method in class loci.poi.hssf.usermodel.HSSFCell

sets the cell type.

setCellValue(double) - Method in class loci.poi.hssf.usermodel.HSSFCell

set a numeric value for the cell

setCellValue(Date) - Method in class loci.poi.hssf.usermodel.HSSFCell

set a date value for the cell.

setCellValue(Calendar) - Method in class loci.poi.hssf.usermodel.HSSFCell

set a date value for the cell.

setCellValue(String) - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.

Use setCellValue(HSSFRichTextString) instead.

setCellValue(HSSFRichTextString) - Method in class loci.poi.hssf.usermodel.HSSFCell

set a string value for the cell.

setCellValue(boolean) - Method in class loci.poi.hssf.usermodel.HSSFCell

set a boolean value for the cell

setCEnd(int, int) - Method in class loci.plugins.in.ImporterOptions

setCenter(String) - Method in class loci.poi.hssf.usermodel.HSSFFooter

Sets the center string.

setCenter(String) - Method in class loci.poi.hssf.usermodel.HSSFHeader

Sets the center string.

setChannel(int, Channel) - Method in class ome.xml.model.Pixels

setChannelAcquisitionMode(AcquisitionMode, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelAcquisitionMode(AcquisitionMode, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelAcquisitionMode(AcquisitionMode, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelAcquisitionMode(AcquisitionMode, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AcquisitionMode property of Channel.

setChannelAcquisitionMode(AcquisitionMode, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Channel.

setChannelAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Color property of Channel.

setChannelColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelContrastMethod(ContrastMethod, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelContrastMethod(ContrastMethod, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelContrastMethod(ContrastMethod, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelContrastMethod(ContrastMethod, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ContrastMethod property of Channel.

setChannelContrastMethod(ContrastMethod, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelEmissionWavelength(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelEmissionWavelength(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelEmissionWavelength(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelEmissionWavelength(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the EmissionWavelength property of Channel.

setChannelEmissionWavelength(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelExcitationWavelength(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelExcitationWavelength(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelExcitationWavelength(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelExcitationWavelength(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExcitationWavelength property of Channel.

setChannelExcitationWavelength(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelFilterSetRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelFilterSetRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelFilterSetRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelFilterSetRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FilterSetRef property of Channel.

setChannelFilterSetRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelFluor(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelFluor(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelFluor(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelFluor(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Fluor property of Channel.

setChannelFluor(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelGlobalMinMax(int, double, double, int) - Method in interface loci.formats.meta.IMinMaxStore

Populates the channel global minimum and maximum.

setChannelID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Channel.

setChannelID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelIlluminationType(IlluminationType, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelIlluminationType(IlluminationType, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelIlluminationType(IlluminationType, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelIlluminationType(IlluminationType, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the IlluminationType property of Channel.

setChannelIlluminationType(IlluminationType, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelLightSourceSettingsAttenuation(PercentFraction, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelLightSourceSettingsAttenuation(PercentFraction, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelLightSourceSettingsAttenuation(PercentFraction, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelLightSourceSettingsAttenuation(PercentFraction, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Attenuation property of LightSourceSettings.

setChannelLightSourceSettingsAttenuation(PercentFraction, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelLightSourceSettingsID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelLightSourceSettingsID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelLightSourceSettingsID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelLightSourceSettingsID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of LightSourceSettings.

setChannelLightSourceSettingsID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelLightSourceSettingsWavelength(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelLightSourceSettingsWavelength(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelLightSourceSettingsWavelength(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelLightSourceSettingsWavelength(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Wavelength property of LightSourceSettings.

setChannelLightSourceSettingsWavelength(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelName(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelName(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelName(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelName(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of Channel.

setChannelName(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelNDFilter(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelNDFilter(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelNDFilter(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelNDFilter(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the NDFilter property of Channel.

setChannelNDFilter(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelPinholeSize(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelPinholeSize(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelPinholeSize(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelPinholeSize(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PinholeSize property of Channel.

setChannelPinholeSize(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelPockelCellSetting(Integer, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelPockelCellSetting(Integer, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelPockelCellSetting(Integer, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelPockelCellSetting(Integer, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PockelCellSetting property of Channel.

setChannelPockelCellSetting(Integer, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setChannelSamplesPerPixel(PositiveInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setChannelSamplesPerPixel(PositiveInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setChannelSamplesPerPixel(PositiveInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setChannelSamplesPerPixel(PositiveInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SamplesPerPixel property of Channel.

setChannelSamplesPerPixel(PositiveInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setCharCount(int) - Method in class loci.poi.hpsf.SummaryInformation

Sets the character count.

setCharCount(short) - Method in class loci.poi.hssf.record.UnicodeString

set the number of characters in the string

setCharset(byte) - Method in class loci.poi.hssf.record.FontRecord

set the character set

setCharSet(byte) - Method in class loci.poi.hssf.usermodel.HSSFFont

set character-set to use.

setChartGroupIndex(short) - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Set the chart group index field for the SeriesChartGroupIndex record.

setChartGroupIndex(short) - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Set the chart group index field for the SeriesToChartGroup record.

setChartTypeManuallyFormatted(boolean) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Sets the chart type manually formatted field value.

setChildProperty(int) - Method in class loci.poi.poifs.property.Property

Set the child property.

setChildRecords(List) - Method in class loci.poi.ddf.EscherContainerRecord

setChildRecords(List) - Method in class loci.poi.ddf.EscherRecord

Sets the child records for this record.

setChildRecords(List) - Method in class loci.poi.ddf.UnknownEscherRecord

setChildren(Node[]) - Method in class loci.poi.hssf.model.Node

setClass(Node, byte) - Method in class loci.poi.hssf.model.FormulaParser

setClass(byte) - Method in class loci.poi.hssf.record.formula.Ptg

setClassID(ClassID) - Method in class loci.poi.hpsf.MutablePropertySet

Sets the property set stream's low-level "class ID" field.

setClassID(ClassID) - Method in class loci.poi.hpsf.SpecialPropertySet

setClip(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setClip(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setClip(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

setClip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics

setClip(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setClip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setClipRect(Rectangle) - Method in class loci.plugins.util.RecordedImageProcessor

setCO2Percent(PercentFraction) - Method in class ome.xml.model.ImagingEnvironment

setCodeBlockSize(int[]) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets codeBlockSize.

setCodeBlockSize(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets codeBlockSize

setCodec(int) - Method in class loci.formats.out.LegacyQTWriter

Sets the encoded movie's codec.

setCodec(int) - Method in class loci.formats.out.QTWriter

Sets the encoded movie's codec.

setCodec() - Method in class loci.formats.out.QTWriter

setCodecOptions(CodecOptions) - Method in class loci.formats.FormatWriter

setCodecOptions(CodecOptions) - Method in interface loci.formats.IFormatWriter

Sets the codec options.

setCodecOptions(CodecOptions) - Method in class loci.formats.ImageWriter

setCodecOptions(CodecOptions) - Method in class loci.formats.tiff.TiffParser

Sets the codec options to be used when decompressing pixel data.

setCodecOptions(CodecOptions) - Method in class loci.formats.tiff.TiffSaver

Sets the codec options.

setCodecOptions(CodecOptions) - Method in class loci.formats.WriterWrapper

setCodepage(int) - Method in class loci.poi.hpsf.CustomProperties

Sets the codepage.

setCodepage(int) - Method in class loci.poi.hpsf.MutableSection

Sets the codepage.

setCodepage(short) - Method in class loci.poi.hssf.record.CodepageRecord

set the codepage for this workbook

setCodepage(short) - Method in class loci.poi.hssf.record.InterfaceHdrRecord

set the codepage for the file

setCodeSegSymbol(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets codeSegSymbol

setCol1(short) - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column number for the top-left position.

setCol1(short) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

setCol2(short) - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column of the bottom right corner of this shape.

setCol2(short) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

setColapsed(boolean) - Method in class loci.poi.hssf.record.RowRecord

set whether or not to colapse this row

setCollapsed(boolean) - Method in class loci.poi.hssf.record.ColumnInfoRecord

set whether the cells are collapsed

setColLevelMax(short) - Method in class loci.poi.hssf.record.GutsRecord

set the maximum outline level for the col gutter.

setColor(Color) - Method in class loci.plugins.util.RecordedImageProcessor

setColor(int) - Method in class loci.plugins.util.RecordedImageProcessor

setColor(short, byte, byte, byte) - Method in class loci.poi.hssf.record.PaletteRecord

Sets the color value at a given index If the given index is greater than the current last color index, then black is inserted at every index required to make the palette continuous.

setColor(Color) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setColor(Color) - Method in class loci.poi.hssf.usermodel.EscherGraphics

setColor(Color) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setColor(short) - Method in class loci.poi.hssf.usermodel.HSSFFont

set the color for the font

setColor(Color) - Method in class ome.xml.model.Channel

setColor(Color) - Method in class ome.xml.model.Well

setColor1(int) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

setColor2(int) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

setColor3(int) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

setColor4(int) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

setColorAtIndex(short, byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Sets the color at the given offset

setColorConverter(TIFFColorConverter) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the TIFFColorConverter object describing the color space of the encoded data in the input stream.

setColorConverter(TIFFColorConverter) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Sets the TIFFColorConverter object for the pixel data being read.

setColorConverter(TIFFColorConverter, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Sets the TIFFColorConverter object describing the color space to which the input data should be converted for storage in the input stream.

setColorMap(char[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the colorMap field.

setColorMap(char[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setColorMode(String) - Method in class loci.plugins.in.ImporterOptions

setColorModel(ColorModel) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

setColorModel(ColorModel) - Method in class loci.formats.FormatWriter

setColorModel(ColorModel) - Method in interface loci.formats.IFormatWriter

Sets the color model.

setColorModel(ColorModel) - Method in class loci.formats.ImageWriter

setColorModel(ColorModel) - Method in class loci.formats.WriterWrapper

setColorModel(ColorModel) - Method in class loci.plugins.util.RecordedImageProcessor

setColorPaletteIndex(short) - Method in class loci.poi.hssf.record.FontRecord

set the font's color palette index

setColourPaletteIndex(short) - Method in class loci.poi.hssf.record.LineFormatRecord

Set the colour palette index field for the LineFormat record.

setColRelative(boolean) - Method in class loci.poi.hssf.record.formula.Ref3DPtg

setColRelative(boolean) - Method in class loci.poi.hssf.record.formula.ReferencePtg

setColumn(short, Short, Integer, Boolean, Boolean) - Method in class loci.poi.hssf.model.Sheet

setColumn(short, Short, Short, Integer, Boolean, Boolean) - Method in class loci.poi.hssf.model.Sheet

setColumn(short, Short, Short, Integer, Boolean, Boolean) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

setColumn(short) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

setColumn(short) - Method in class loci.poi.hssf.record.BlankRecord

set the column this cell defines within the row

setColumn(short) - Method in class loci.poi.hssf.record.BoolErrRecord

setColumn(short) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

set the column this cell defines within the row

setColumn(short) - Method in class loci.poi.hssf.record.formula.Ref3DPtg

setColumn(short) - Method in class loci.poi.hssf.record.formula.ReferencePtg

setColumn(short) - Method in class loci.poi.hssf.record.FormulaRecord

setColumn(short) - Method in class loci.poi.hssf.record.LabelRecord

NO-OP!

setColumn(short) - Method in class loci.poi.hssf.record.LabelSSTRecord

setColumn(short) - Method in class loci.poi.hssf.record.NoteRecord

Specify the column that contains the comment

setColumn(short) - Method in class loci.poi.hssf.record.NumberRecord

setColumn(short) - Method in class loci.poi.hssf.record.RKRecord

setColumn(short) - Method in class loci.poi.hssf.usermodel.HSSFComment

Set the column of the cell that contains the comment

setColumn(int) - Method in class mdbtools.dbengine.sql.FQColumn

setColumn(NonNegativeInteger) - Method in class ome.xml.model.Well

setColumnBreak(short, short, short) - Method in class loci.poi.hssf.model.Sheet

Sets a page break at the indicated column

setColumnBreak(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets a page break at the indicated column

setColumnCount(short) - Method in class loci.poi.hssf.record.formula.ArrayPtg

setColumnFrom(short) - Method in class loci.poi.hssf.util.Region

set the upper left hand corner column number

setColumnGroupCollapsed(short, boolean) - Method in class loci.poi.hssf.model.Sheet

setColumnGroupCollapsed(short, boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Expands or collapses a column group.

setColumnHidden(short, boolean) - Method in class loci.poi.hssf.model.Sheet

Get the hidden property for a given column.

setColumnHidden(short, boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Get the visibility state for a given column.

setColumnInfoFields(ColumnInfoRecord, Short, Short, Integer, Boolean, Boolean) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Sets all non null fields into the ci parameter.

setColumnNamingConvention(NamingConvention) - Method in class ome.xml.model.Plate

setColumnRaw(short) - Method in class loci.poi.hssf.record.formula.Ref3DPtg

setColumnRaw(short) - Method in class loci.poi.hssf.record.formula.ReferencePtg

setColumns(PositiveInteger) - Method in class ome.xml.model.Plate

setColumnTo(short) - Method in class loci.poi.hssf.util.Region

set the lower right hand corner column number

setColumnWidth(short, short) - Method in class loci.poi.hssf.model.Sheet

set the width for a given column in 1/20th of a character width units

setColumnWidth(short) - Method in class loci.poi.hssf.record.ColumnInfoRecord

set the columns' width in 1/256 of a character width

setColumnWidth(short, short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

set the width (in units of 1/256th of a character width)

setColWidth(short) - Method in class loci.poi.hssf.record.DefaultColWidthRecord

set the default column width

setCommentAnnotation(int, CommentAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setCommentAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setCommentAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setCommentAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setCommentAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of CommentAnnotation.

setCommentAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setCommentAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setCommentAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setCommentAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setCommentAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of CommentAnnotation.

setCommentAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setCommentAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setCommentAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setCommentAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setCommentAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of CommentAnnotation.

setCommentAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setCommentAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setCommentAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setCommentAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setCommentAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of CommentAnnotation.

setCommentAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setCommentAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setCommentAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setCommentAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setCommentAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of CommentAnnotation.

setCommentAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setCommentAnnotationValue(String, int) - Method in class ome.xml.meta.AggregateMetadata

setCommentAnnotationValue(String, int) - Method in class ome.xml.meta.DummyMetadata

setCommentAnnotationValue(String, int) - Method in class ome.xml.meta.FilterMetadata

setCommentAnnotationValue(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Value property of CommentAnnotation.

setCommentAnnotationValue(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setCommentDelimiter(String) - Method in class loci.common.IniParser

Set the String that identifies a comment.

setComments(String) - Method in class loci.poi.hpsf.SummaryInformation

Sets the comments.

setCompany(String) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the company.

setCompDef(int, Object) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Sets default value for specified component and specValType tag if allowed by its priority.

setCompDef(int, Object) - Method in class jj2000.j2k.ModuleSpec

Sets default value for specified component and specValType tag if allowed by its priority.

setComponentTransformation(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets componentTransformation.

setComponentTransformation(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets componentTransformation

setComposite(Composite) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setComposite(Composite) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setCompressed(boolean) - Method in class loci.poi.ddf.EscherMetafileBlip

setCompressed(boolean) - Method in class loci.poi.ddf.EscherPictBlip

setCompressedFlag(byte) - Method in class loci.poi.hssf.record.StringRecord

Sets whether the string is compressed or not

setCompressedSize(int) - Method in class loci.poi.ddf.EscherMetafileBlip

setCompressedSize(int) - Method in class loci.poi.ddf.EscherPictBlip

setCompressedUnicode() - Method in class loci.poi.hssf.record.UnicodeString

setCompressedUnicodeFlag(byte) - Method in class loci.poi.hssf.record.BoundSheetRecord

set whether or not to interperate the Sheetname as compressed unicode (8/16 bit) (This is undocumented but can be found as Q187919 on the Microsoft(tm) Support site)

setCompressedUnicodeFlag(byte) - Method in class loci.poi.hssf.record.NameRecord

sets the compressed unicode flag

setCompression(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the compression field.

setCompression(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setCompression(String) - Method in class loci.formats.FormatWriter

setCompression(String) - Method in interface loci.formats.IFormatWriter

Sets the current compression type.

setCompression(String) - Method in class loci.formats.ImageWriter

setCompression(String) - Method in class loci.formats.WriterWrapper

setCompression(Compression) - Method in class ome.xml.model.BinData

setCompression(Compression) - Method in class ome.xml.model.External

setCompressionFlag(byte) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set whether the contents of the blip is compressed

setCompressionMode(int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriteParam

setCompressionType(String) - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Sets the compression type to one of the values indicated by getCompressionTypes.

setConcatenate(boolean) - Method in class loci.plugins.in.ImporterOptions

setContent(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Sets the box content.

setContrastMethod(ContrastMethod) - Method in class ome.xml.model.Channel

setCoordinates(int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Sets the coordinate space of this group.

setCoordinates(int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Sets the coordinate space of this group.

setCopies(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

setCopies(short) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Sets the number of copies.

setCoreIndex(int) - Method in class loci.formats.DelegateReader

setCoreIndex(int) - Method in class loci.formats.FileStitcher

setCoreIndex(int) - Method in class loci.formats.FormatReader

setCoreIndex(int) - Method in interface loci.formats.IFormatReader

Set the current resolution/series (ignores subresolutions).

setCoreIndex(int) - Method in class loci.formats.ImageReader

setCoreIndex(int) - Method in class loci.formats.in.FilePatternReader

setCoreIndex(int) - Method in class loci.formats.ReaderWrapper

setCorrection(Correction) - Method in class ome.xml.model.Objective

setCorrectionCollar(Double) - Method in class ome.xml.model.ObjectiveSettings

setCount(short) - Method in class loci.poi.hssf.record.FnGroupCountRecord

set the number of built-in functions

setCreateDateTime(Date) - Method in class loci.poi.hpsf.SummaryInformation

Sets the creation time.

setCreator(String) - Method in class ome.xml.model.OME

setCrop(boolean) - Method in class loci.plugins.in.ImporterOptions

setCropRegion(int, Region) - Method in class loci.plugins.in.ImporterOptions

setCrossCategoryAxisAtMaximum(boolean) - Method in class loci.poi.hssf.record.ValueRangeRecord

Sets the cross category axis at maximum field value.

setCrossesFarRight(boolean) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Sets the crosses far right field value.

setCrossingPoint(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Set the crossing point field for the AxisOptions record.

setCrossingPoint(short) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Set the crossing point field for the CategorySeriesAxis record.

setCStep(int, int) - Method in class loci.plugins.in.ImporterOptions

setCurrentCountry(short) - Method in class loci.poi.hssf.record.CountryRecord

sets the current country

setCurrentPos(int[]) - Method in class loci.formats.cache.Cache

Sets the current dimensional position.

setCustomColor(int, int, Color) - Method in class loci.plugins.in.ImporterOptions

setCustomMenuLength(byte) - Method in class loci.poi.hssf.record.NameRecord

sets the custom menu length

setCustomMenuText(String) - Method in class loci.poi.hssf.record.NameRecord

sets the custom menu text

setCustomNumberFormat(boolean) - Method in class loci.poi.hssf.record.LinkedDataRecord

Sets the custom number format field value.

setCustomProperties(CustomProperties) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the custom properties.

setCutIn(Length) - Method in class ome.xml.model.TransmittanceRange

setCutInTolerance(Length) - Method in class ome.xml.model.TransmittanceRange

setCutOut(Length) - Method in class ome.xml.model.TransmittanceRange

setCutOutTolerance(Length) - Method in class ome.xml.model.TransmittanceRange

setData(Object) - Method in class jj2000.j2k.image.DataBlk

Sets the data array to the specified one.

setData(Object) - Method in class jj2000.j2k.image.DataBlkFloat

Sets the data array to the specified one.

setData(Object) - Method in class jj2000.j2k.image.DataBlkInt

Sets the data array to the specified one.

setData(Object) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Sets the data array to the specified one.

setData(Object) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Sets the data array to the specified one.

setData(Object) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Sets the data array to the specified one.

setData(byte[]) - Method in class loci.poi.ddf.EscherBlipWMFRecord

The BLIP data

setData(byte[], int, int) - Method in class loci.poi.ddf.EscherTextboxRecord

Sets the extra data (in the parent application's format) to be contained by the record.

setData(byte[]) - Method in class loci.poi.ddf.EscherTextboxRecord

setData(byte[]) - Method in class loci.poi.hssf.record.ContinueRecord

setData(byte[]) - Method in class loci.poi.hssf.record.DrawingRecord

setData(short) - Method in class loci.poi.hssf.record.formula.AttrPtg

setDataFloat(float[]) - Method in class jj2000.j2k.image.DataBlkFloat

Sets the data array to the specified one.

setDataFloat(float[]) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Sets the data array to the specified one.

setDataFormat(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the data format (must be a valid format)

setDataInt(int[]) - Method in class jj2000.j2k.image.DataBlkInt

Sets the data array to the specified one.

setDataInt(int[]) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Sets the data array to the specified one.

setDataLabelPlacement(short) - Method in class loci.poi.hssf.record.TextRecord

Sets the data label placement field value.

setDataset(int, Dataset) - Method in class ome.xml.model.OME

setDatasetAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDatasetAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDatasetAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDatasetAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Dataset.

setDatasetAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDatasetDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setDatasetDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setDatasetDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setDatasetDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of Dataset.

setDatasetDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDatasetExperimenterGroupRef(String, int) - Method in class ome.xml.meta.AggregateMetadata

setDatasetExperimenterGroupRef(String, int) - Method in class ome.xml.meta.DummyMetadata

setDatasetExperimenterGroupRef(String, int) - Method in class ome.xml.meta.FilterMetadata

setDatasetExperimenterGroupRef(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimenterGroupRef property of Dataset.

setDatasetExperimenterGroupRef(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDatasetExperimenterRef(String, int) - Method in class ome.xml.meta.AggregateMetadata

setDatasetExperimenterRef(String, int) - Method in class ome.xml.meta.DummyMetadata

setDatasetExperimenterRef(String, int) - Method in class ome.xml.meta.FilterMetadata

setDatasetExperimenterRef(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimenterRef property of Dataset.

setDatasetExperimenterRef(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDatasetID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setDatasetID(String, int) - Method in class ome.xml.meta.DummyMetadata

setDatasetID(String, int) - Method in class ome.xml.meta.FilterMetadata

setDatasetID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Dataset.

setDatasetID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDatasetImageRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDatasetImageRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDatasetImageRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDatasetImageRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ImageRef property of Dataset.

setDatasetImageRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDatasetName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setDatasetName(String, int) - Method in class ome.xml.meta.DummyMetadata

setDatasetName(String, int) - Method in class ome.xml.meta.FilterMetadata

setDatasetName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of Dataset.

setDatasetName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDataTable(boolean) - Method in class loci.poi.hssf.record.LegendRecord

Sets the data table field value.

setDataType(String) - Method in class loci.formats.in.InveonReader

setDbcell(int, int) - Method in class loci.poi.hssf.record.IndexRecord

setDecodingRate(double) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Sets decodingRate.

setDecompositionLevel(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets decompositionLevel

setDefault(Object) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Sets default value for this module

setDefault(Object) - Method in class jj2000.j2k.ModuleSpec

Sets default value for this module

setDefaultAttributes(IIOMetadataNode) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Sets the default attributes, "Length", "Type", and "ExtraLength", to the provided IIOMetadataNode.

setDefaultBase(boolean) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Sets the default base field value.

setDefaultBufferSize(int) - Static method in class loci.common.NIOFileHandle

Set the default buffer size for read-only files.

setDefaultColumnStyle(short, HSSFCellStyle) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets the default column style for a given column.

setDefaultColumnWidth(short) - Method in class loci.poi.hssf.model.Sheet

set the default column width for the sheet (if the columns do not define their own width)

setDefaultColumnWidth(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

set the default column width for the sheet (if the columns do not define their own width) in characters

setDefaultCountry(short) - Method in class loci.poi.hssf.record.CountryRecord

sets the default country

setDefaultCreationDate(MetadataStore, String, int) - Static method in class loci.formats.MetadataTools

Sets a default creation date.

setDefaultCross(boolean) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Sets the default cross field value.

setDefaultDateEnabled(boolean) - Static method in class loci.formats.MetadataTools

Disables the setting of a default creation date.

setDefaultDateSettings(boolean) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Sets the default date settings field value.

setDefaultHeader(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

set whether the window should display a default header

setDefaultMajor(boolean) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Sets the default major field value.

setDefaultMaximum(boolean) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Sets the default maximum field value.

setDefaultMinimum(boolean) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Sets the default minimum field value.

setDefaultMinorUnit(boolean) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Sets the default minor unit field value.

setDefaultPlotDimensions(boolean) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Sets the default plot dimensions field value.

setDefaultReadWriteBufferSize(int) - Static method in class loci.common.NIOFileHandle

Set the default buffer size for read/write files.

setDefaultRowHeight(short) - Method in class loci.poi.hssf.model.Sheet

set the default row height for the sheet (if the rows do not define their own height)

setDefaultRowHeight(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

set the default row height for the sheet (if the rows do not define their own height) in twips (1/20 of a point)

setDefaultRowHeightInPoints(float) - Method in class loci.poi.hssf.usermodel.HSSFSheet

set the default row height for the sheet (if the rows do not define their own height) in points

setDefaults() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Set source

setDefaults(Raster) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Set source

setDefaults(RenderedImage) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Set source

setDefaults() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

setDefinitionTextLength(short) - Method in class loci.poi.hssf.record.NameRecord

sets the definition (reference - formula) length

setDelMenuCount(byte) - Method in class loci.poi.hssf.record.MMSRecord

set number of del menu options (set to 0)

setDeltaT(Time) - Method in class ome.xml.model.Plane

setDenominator(short) - Method in class loci.poi.hssf.record.SCLRecord

Set the denominator field for the SCL record.

setDescription(String) - Method in class ome.xml.model.Annotation

setDescription(String) - Method in class ome.xml.model.Dataset

setDescription(String) - Method in class ome.xml.model.Experiment

setDescription(String) - Method in class ome.xml.model.ExperimenterGroup

setDescription(String) - Method in class ome.xml.model.Image

setDescription(String) - Method in class ome.xml.model.MicrobeamManipulation

setDescription(String) - Method in class ome.xml.model.Plate

setDescription(String) - Method in class ome.xml.model.PlateAcquisition

setDescription(String) - Method in class ome.xml.model.Project

setDescription(String) - Method in class ome.xml.model.Reagent

setDescription(String) - Method in class ome.xml.model.ROI

setDescription(String) - Method in class ome.xml.model.Screen

setDescriptionText(String) - Method in class loci.poi.hssf.record.NameRecord

sets the description text

setDescriptionTextLength(byte) - Method in class loci.poi.hssf.record.NameRecord

sets the length of named range description

setDestImage(BufferedImage) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

setDestinationBands(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the destinationBands field.

setDestinationBands(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setDetector(Detector) - Method in class ome.xml.model.DetectorSettings

setDetector(int, Detector) - Method in class ome.xml.model.Instrument

setDetectorAmplificationGain(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorAmplificationGain(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorAmplificationGain(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorAmplificationGain(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AmplificationGain property of Detector.

setDetectorAmplificationGain(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Detector.

setDetectorAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorGain(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorGain(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorGain(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorGain(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Gain property of Detector.

setDetectorGain(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Detector.

setDetectorID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of Detector.

setDetectorLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of Detector.

setDetectorManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of Detector.

setDetectorModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorOffset(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorOffset(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorOffset(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorOffset(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Offset property of Detector.

setDetectorOffset(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of Detector.

setDetectorSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorSettings(DetectorSettings) - Method in class ome.xml.model.Channel

setDetectorSettingsBinning(Binning, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorSettingsBinning(Binning, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorSettingsBinning(Binning, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorSettingsBinning(Binning, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Binning property of DetectorSettings.

setDetectorSettingsBinning(Binning, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorSettingsGain(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorSettingsGain(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorSettingsGain(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorSettingsGain(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Gain property of DetectorSettings.

setDetectorSettingsGain(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorSettingsID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorSettingsID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorSettingsID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorSettingsID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of DetectorSettings.

setDetectorSettingsID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorSettingsIntegration(PositiveInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorSettingsIntegration(PositiveInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorSettingsIntegration(PositiveInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorSettingsIntegration(PositiveInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Integration property of DetectorSettings.

setDetectorSettingsIntegration(PositiveInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorSettingsOffset(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorSettingsOffset(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorSettingsOffset(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorSettingsOffset(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Offset property of DetectorSettings.

setDetectorSettingsOffset(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorSettingsReadOutRate(Frequency, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorSettingsReadOutRate(Frequency, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorSettingsReadOutRate(Frequency, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorSettingsReadOutRate(Frequency, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ReadOutRate property of DetectorSettings.

setDetectorSettingsReadOutRate(Frequency, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorSettingsVoltage(ElectricPotential, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorSettingsVoltage(ElectricPotential, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorSettingsVoltage(ElectricPotential, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorSettingsVoltage(ElectricPotential, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Voltage property of DetectorSettings.

setDetectorSettingsVoltage(ElectricPotential, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorSettingsZoom(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorSettingsZoom(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorSettingsZoom(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorSettingsZoom(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Zoom property of DetectorSettings.

setDetectorSettingsZoom(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorType(DetectorType, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorType(DetectorType, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorType(DetectorType, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorType(DetectorType, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Detector.

setDetectorType(DetectorType, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorVoltage(ElectricPotential, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorVoltage(ElectricPotential, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorVoltage(ElectricPotential, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorVoltage(ElectricPotential, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Voltage property of Detector.

setDetectorVoltage(ElectricPotential, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDetectorZoom(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDetectorZoom(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setDetectorZoom(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setDetectorZoom(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Zoom property of Detector.

setDetectorZoom(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDeviceclip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setDiag(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Not sure what this is for (maybe fill lines?) 1 = down, 2 = up, 3 = both, 0 for none..

setDialog(boolean) - Method in class loci.poi.hssf.record.WSBoolRecord

set whether sheet is a dialog sheet or not

setDialog(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

set whether sheet is a dialog sheet or not

setDichroic(int, Dichroic) - Method in class ome.xml.model.Instrument

setDichroicAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDichroicAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setDichroicAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setDichroicAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Dichroic.

setDichroicAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDichroicID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDichroicID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDichroicID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDichroicID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Dichroic.

setDichroicID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDichroicLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDichroicLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDichroicLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDichroicLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of Dichroic.

setDichroicLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDichroicManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDichroicManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDichroicManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDichroicManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of Dichroic.

setDichroicManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDichroicModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDichroicModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDichroicModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDichroicModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of Dichroic.

setDichroicModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDichroicSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDichroicSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDichroicSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDichroicSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of Dichroic.

setDichroicSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDictionary(Map) - Method in class loci.poi.hpsf.MutableSection

Sets the section's dictionary.

setDimensionOrder(DimensionOrder) - Method in class ome.xml.model.Pixels

setDimensions(int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

setDimensions(int, short, int, short) - Method in class loci.poi.hssf.model.Sheet

Per an earlier reported bug in working with Andy Khan's excel read library.

setDisplayAsPercentage(boolean) - Method in class loci.poi.hssf.record.AreaRecord

Sets the display as percentage field value.

setDisplayAsPercentage(boolean) - Method in class loci.poi.hssf.record.BarRecord

Sets the display as percentage field value.

setDisplayedTab(short) - Method in class loci.poi.hssf.record.WindowOneRecord

set the displayed tab number

setDisplayedTab(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

sets the first tab that is displayed in the list of tabs in excel.

setDisplayFormulas(boolean) - Method in class loci.poi.hssf.model.Sheet

Sets whether the formulas are shown in a viewer.

setDisplayFormulas(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

set whether the window should display formulas

setDisplayFormulas(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets whether the formulas are shown in a viewer.

setDisplayGridlines(boolean) - Method in class loci.poi.hssf.model.Sheet

/** Sets whether the gridlines are shown in a viewer.

setDisplayGridlines(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

set whether the window should display gridlines

setDisplayGridlines(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets whether the gridlines are shown in a viewer.

setDisplayGuts(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

set whether the outline symbols are displaed

setDisplayGuts(boolean) - Method in class loci.poi.hssf.record.WSBoolRecord

set whether to display the guts or not

setDisplayGuts(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

set whether to display the guts or not

setDisplayHorizonalScrollbar(boolean) - Method in class loci.poi.hssf.record.WindowOneRecord

set whether to display the horizontal scrollbar or not

setDisplayMode(short) - Method in class loci.poi.hssf.record.TextRecord

Set the display mode field for the Text record.

setDisplayRowColHeadings(boolean) - Method in class loci.poi.hssf.model.Sheet

Sets whether the RowColHeadings are shown in a viewer.

setDisplayRowColHeadings(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

set whether the window should display row and column headings

setDisplayRowColHeadings(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets whether the RowColHeadings are shown in a viewer.

setDisplayTabs(boolean) - Method in class loci.poi.hssf.record.WindowOneRecord

set whether to display the tabs or not

setDisplayVerticalScrollbar(boolean) - Method in class loci.poi.hssf.record.WindowOneRecord

set whether to display the vertical scrollbar or not

setDisplayZeros(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

set whether the window should display zero values

setDoCaching(boolean) - Method in class loci.formats.tiff.TiffParser

Sets whether or not IFD entries should be cached.

setDocparts(byte[]) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the doc parts.

setDocument(Document) - Method in class loci.formats.gui.XMLWindow

Displays XML from the given document.

setDocument(POIFSDocument) - Method in class loci.poi.poifs.property.DocumentProperty

set the POIFSDocument

setDocumentLocator(Locator) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler

setDoNotSizeWithWindow(boolean) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Sets the do not size with window field value.

setDoRecording(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

setDoubleAnnotation(int, DoubleAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setDoubleAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setDoubleAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setDoubleAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setDoubleAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of DoubleAnnotation.

setDoubleAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDoubleAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setDoubleAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setDoubleAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setDoubleAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of DoubleAnnotation.

setDoubleAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDoubleAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setDoubleAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setDoubleAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setDoubleAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of DoubleAnnotation.

setDoubleAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDoubleAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setDoubleAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setDoubleAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setDoubleAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of DoubleAnnotation.

setDoubleAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDoubleAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setDoubleAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setDoubleAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setDoubleAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of DoubleAnnotation.

setDoubleAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDoubleAnnotationValue(Double, int) - Method in class ome.xml.meta.AggregateMetadata

setDoubleAnnotationValue(Double, int) - Method in class ome.xml.meta.DummyMetadata

setDoubleAnnotationValue(Double, int) - Method in class ome.xml.meta.FilterMetadata

setDoubleAnnotationValue(Double, int) - Method in interface ome.xml.meta.MetadataStore

Set the Value property of DoubleAnnotation.

setDoubleAnnotationValue(Double, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setDraft(boolean) - Method in class loci.poi.hssf.record.PrintSetupRecord

setDraft(boolean) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set whether it is in draft mode

setDrawingsSaved(int) - Method in class loci.poi.ddf.EscherDggRecord

setDrawTicks(boolean) - Method in class loci.poi.hssf.record.LineFormatRecord

Sets the draw ticks field value.

setDsf(short) - Method in class loci.poi.hssf.record.DSFRecord

set the DSF flag

setDstHeight(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the dstHeight field.

setDstHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setDstMinX(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the dstMinX field.

setDstMinX(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setDstMinY(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the dstMinY field.

setDstMinY(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setDstWidth(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the dstWidth field.

setDstWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setDstXOffset(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the dstXOffset field.

setDstXOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setDstYOffset(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the dstYOffset field.

setDstYOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setDump(boolean) - Method in class loci.poi.hssf.dev.BiffViewer

Method setDump - hex dump out data or not.

setDx1(int) - Method in class loci.poi.ddf.EscherChildAnchorRecord

Sets offset within the parent coordinate space for the top left point.

setDx1(short) - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset within the top-left cell.

setDx1(int) - Method in class loci.poi.hssf.usermodel.HSSFAnchor

setDx2(int) - Method in class loci.poi.ddf.EscherChildAnchorRecord

Sets offset within the parent coordinate space for the bottom right point.

setDx2(short) - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset withing the cell for the bottom-right corner of this shape.

setDx2(int) - Method in class loci.poi.hssf.usermodel.HSSFAnchor

setDy1(int) - Method in class loci.poi.ddf.EscherChildAnchorRecord

Sets offset within the parent coordinate space for the top left point.

setDy1(short) - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset within the top-left corner of the current shape.

setDy1(int) - Method in class loci.poi.hssf.usermodel.HSSFAnchor

setDy2(int) - Method in class loci.poi.ddf.EscherChildAnchorRecord

Sets the offset within the parent coordinate space for the bottom right point.

setDy2(short) - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset withing the cell for the bottom-right corner of this shape.

setDy2(int) - Method in class loci.poi.hssf.usermodel.HSSFAnchor

setEditTime(long) - Method in class loci.poi.hpsf.SummaryInformation

Sets the total time spent in editing the document.

setElem(int, int) - Method in class loci.formats.gui.SignedByteBuffer

setElem(int, int, int) - Method in class loci.formats.gui.SignedByteBuffer

setElem(int, int, int) - Method in class loci.formats.gui.SignedShortBuffer

setElem(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

setElem(int, int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

setElemDouble(int, double) - Method in class loci.formats.gui.UnsignedIntBuffer

setElemDouble(int, int, double) - Method in class loci.formats.gui.UnsignedIntBuffer

setElement(int, byte[]) - Method in class loci.poi.ddf.EscherArrayProperty

setElemFloat(int, float) - Method in class loci.formats.gui.UnsignedIntBuffer

setElemFloat(int, int, float) - Method in class loci.formats.gui.UnsignedIntBuffer

setEllipseAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Ellipse.

setEllipseAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseFillColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseFillColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseFillColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseFillColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillColor property of Ellipse.

setEllipseFillColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseFillRule(FillRule, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseFillRule(FillRule, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseFillRule(FillRule, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseFillRule(FillRule, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillRule property of Ellipse.

setEllipseFillRule(FillRule, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseFontFamily(FontFamily, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontFamily property of Ellipse.

setEllipseFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseFontSize(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseFontSize(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseFontSize(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseFontSize(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontSize property of Ellipse.

setEllipseFontSize(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseFontStyle(FontStyle, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontStyle property of Ellipse.

setEllipseFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Ellipse.

setEllipseID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseLineCap(LineCap, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseLineCap(LineCap, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseLineCap(LineCap, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseLineCap(LineCap, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LineCap property of Ellipse.

setEllipseLineCap(LineCap, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseLocked(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseLocked(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseLocked(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseLocked(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Locked property of Ellipse.

setEllipseLocked(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseRadiusX(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseRadiusX(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseRadiusX(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseRadiusX(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the RadiusX property of Ellipse.

setEllipseRadiusX(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseRadiusY(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseRadiusY(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseRadiusY(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseRadiusY(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the RadiusY property of Ellipse.

setEllipseRadiusY(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseStrokeColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseStrokeColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseStrokeColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseStrokeColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeColor property of Ellipse.

setEllipseStrokeColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseStrokeDashArray(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseStrokeDashArray(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseStrokeDashArray(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseStrokeDashArray(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeDashArray property of Ellipse.

setEllipseStrokeDashArray(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseStrokeWidth(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseStrokeWidth(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseStrokeWidth(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseStrokeWidth(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeWidth property of Ellipse.

setEllipseStrokeWidth(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseText(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseText(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseText(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseText(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Text property of Ellipse.

setEllipseText(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseTheC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheC property of Ellipse.

setEllipseTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseTheT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheT property of Ellipse.

setEllipseTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseTheZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheZ property of Ellipse.

setEllipseTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseTransform(AffineTransform, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseTransform(AffineTransform, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseTransform(AffineTransform, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseTransform(AffineTransform, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Transform property of Ellipse.

setEllipseTransform(AffineTransform, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseVisible(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseVisible(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseVisible(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseVisible(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Visible property of Ellipse.

setEllipseVisible(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseX(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseX(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseX(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseX(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the X property of Ellipse.

setEllipseX(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEllipseY(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setEllipseY(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setEllipseY(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setEllipseY(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Y property of Ellipse.

setEllipseY(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setEmail(String) - Method in class ome.xml.model.Experimenter

setEmissionWavelength(Length) - Method in class ome.xml.model.Channel

setEmpty(byte) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Set the empty field for the SheetProperties record.

setEncoding(String) - Method in class loci.common.RandomAccessInputStream

Sets the native encoding of the stream.

setEncoding(short) - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.

As of 3-Jan-06 POI now automatically handles Unicode without forcing the encoding.

setEncodingRate(double) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets encodingRate.

setEncodingRate(double) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets encodingRate

setEndTime(Timestamp) - Method in class ome.xml.model.PlateAcquisition

setEntries(ListManagedBlock[], BlockList, int) - Method in class loci.poi.poifs.storage.BlockAllocationTableReader

Convert an array of blocks into a set of integer indices

setEPH(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets EPH.

setEPH(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets EPH

setEqualsToIndexToSheet(short) - Method in class loci.poi.hssf.record.NameRecord

setEquation(Equation) - Method in class mdbtools.dbengine.sql.Join

setError(boolean) - Method in class loci.poi.hssf.record.BoolErrRecord

manually indicate this is an error rather than a boolean

setExcitationWavelength(Length) - Method in class ome.xml.model.Channel

setExperiment(Experiment) - Method in class ome.xml.model.MicrobeamManipulation

setExperiment(int, Experiment) - Method in class ome.xml.model.OME

setExperimentDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimentDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimentDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimentDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of Experiment.

setExperimentDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenter(int, Experimenter) - Method in class ome.xml.model.OME

setExperimenterAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Experimenter.

setExperimenterAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterEmail(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterEmail(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterEmail(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterEmail(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Email property of Experimenter.

setExperimenterEmail(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterFirstName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterFirstName(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterFirstName(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterFirstName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the FirstName property of Experimenter.

setExperimenterFirstName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterGroup(int, ExperimenterGroup) - Method in class ome.xml.model.OME

setExperimenterGroupAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterGroupAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterGroupAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterGroupAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of ExperimenterGroup.

setExperimenterGroupAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterGroupDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterGroupDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterGroupDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterGroupDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of ExperimenterGroup.

setExperimenterGroupDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterGroupExperimenterRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterGroupExperimenterRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterGroupExperimenterRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterGroupExperimenterRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimenterRef property of ExperimenterGroup.

setExperimenterGroupExperimenterRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterGroupID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterGroupID(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterGroupID(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterGroupID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of ExperimenterGroup.

setExperimenterGroupID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterGroupLeader(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterGroupLeader(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterGroupLeader(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterGroupLeader(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Leader property of ExperimenterGroup.

setExperimenterGroupLeader(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterGroupName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterGroupName(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterGroupName(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterGroupName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of ExperimenterGroup.

setExperimenterGroupName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterID(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterID(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Experimenter.

setExperimenterID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterInstitution(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterInstitution(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterInstitution(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterInstitution(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Institution property of Experimenter.

setExperimenterInstitution(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterLastName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterLastName(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterLastName(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterLastName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the LastName property of Experimenter.

setExperimenterLastName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterMiddleName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterMiddleName(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterMiddleName(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterMiddleName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the MiddleName property of Experimenter.

setExperimenterMiddleName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimenterUserName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimenterUserName(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimenterUserName(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimenterUserName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the UserName property of Experimenter.

setExperimenterUserName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimentExperimenterRef(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimentExperimenterRef(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimentExperimenterRef(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimentExperimenterRef(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimenterRef property of Experiment.

setExperimentExperimenterRef(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimentID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimentID(String, int) - Method in class ome.xml.meta.DummyMetadata

setExperimentID(String, int) - Method in class ome.xml.meta.FilterMetadata

setExperimentID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Experiment.

setExperimentID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExperimentType(ExperimentType, int) - Method in class ome.xml.meta.AggregateMetadata

setExperimentType(ExperimentType, int) - Method in class ome.xml.meta.DummyMetadata

setExperimentType(ExperimentType, int) - Method in class ome.xml.meta.FilterMetadata

setExperimentType(ExperimentType, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Experiment.

setExperimentType(ExperimentType, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setExposureTime(Time) - Method in class ome.xml.model.Plane

setExpressionLength(short) - Method in class loci.poi.hssf.record.FormulaRecord

set the length (in number of tokens) of the expression

setExtend(int) - Method in class loci.common.NIOInputStream

Sets the number of bytes by which to extend the stream.

setExtendedRst(byte[]) - Method in class loci.poi.hssf.record.UnicodeString

setExternal(External) - Method in class ome.xml.model.BinaryFile

setExternalDescription(String) - Method in class ome.xml.model.Well

setExternalIdentifier(String) - Method in class ome.xml.model.Plate

setExternalIdentifier(String) - Method in class ome.xml.model.Well

setExternSheetIndex(short) - Method in class loci.poi.hssf.record.formula.Area3DPtg

setExternSheetIndex(short) - Method in class loci.poi.hssf.record.formula.Ref3DPtg

setExternSheetNumber(short) - Method in class loci.poi.hssf.record.NameRecord

sets the extern sheet number

setExternsheetPos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

Sets the externsheetPos.

setExtraLength(long) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Sets the box extra length length to the provided value.

setExtraSamples(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the extraSamples field.

setExtraSamples(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setf(int, float) - Method in class loci.plugins.util.RecordedImageProcessor

setf(int, int, float) - Method in class loci.plugins.util.RecordedImageProcessor

setFamily(byte) - Method in class loci.poi.hssf.record.FontRecord

set the font family (TODO)

setField(int, int, int, int) - Method in class loci.poi.hssf.record.StyleRecord

setFieldIndex(NonNegativeInteger) - Method in class ome.xml.model.Plate

setFilamentAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilamentAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilamentAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilamentAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Filament.

setFilamentAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilamentID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilamentID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilamentID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilamentID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Filament.

setFilamentID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilamentLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilamentLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilamentLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilamentLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of Filament.

setFilamentLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilamentManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilamentManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilamentManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilamentManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of Filament.

setFilamentManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilamentModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilamentModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilamentModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilamentModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of Filament.

setFilamentModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilamentPower(Power, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilamentPower(Power, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilamentPower(Power, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilamentPower(Power, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Power property of Filament.

setFilamentPower(Power, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilamentSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilamentSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilamentSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilamentSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of Filament.

setFilamentSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilamentType(FilamentType, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilamentType(FilamentType, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilamentType(FilamentType, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilamentType(FilamentType, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Filament.

setFilamentType(FilamentType, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFile(String) - Method in interface loci.formats.services.JHDFService

Initializes the service on a given file path.

setFile(String) - Method in class loci.formats.services.JHDFServiceImpl

setFile(String) - Method in interface loci.formats.services.NetCDFService

Initializes the service on a given file path.

setFile(String) - Method in class loci.formats.services.NetCDFServiceImpl

setFile(String) - Method in class loci.poi.hssf.dev.EFBiffViewer

setFile(String) - Method in class loci.poi.hssf.dev.FormulaViewer

Method setFile

setFileAnnotation(int, FileAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setFileAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFileAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFileAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFileAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of FileAnnotation.

setFileAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFileAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setFileAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setFileAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setFileAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of FileAnnotation.

setFileAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFileAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setFileAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setFileAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setFileAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of FileAnnotation.

setFileAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFileAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setFileAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setFileAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setFileAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of FileAnnotation.

setFileAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFileAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setFileAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setFileAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setFileAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of FileAnnotation.

setFileAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFileForWrite(String) - Method in interface loci.formats.services.JHDFService

Initializes the service on a given file path.

setFileForWrite(String) - Method in class loci.formats.services.JHDFServiceImpl

setFileIdClusters(EscherDggRecord.FileIdCluster[]) - Method in class loci.poi.ddf.EscherDggRecord

setFileName(String) - Method in class ome.xml.model.BinaryFile

setFileName(String) - Method in class ome.xml.model.UUID

setFillBackground(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the background palette color index

setFillBackgroundColor(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the background fill color.

setFillColor(int) - Method in class loci.poi.hssf.usermodel.HSSFShape

The color used to fill this shape.

setFillColor(int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFShape

The color used to fill this shape.

setFillColor(Color) - Method in class ome.xml.model.Shape

setFilled(boolean) - Method in class loci.formats.ChannelFiller

Toggles whether the indices should be factored out.

setFillForeground(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the foreground palette color index

setFillForegroundColor(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the foreground fill color Note: Ensure Foreground color is set prior to background color.

setFillPaletteOptions(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the fill palette options bitmask (see

setFillPattern(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

setting to one fills the cell with the foreground color...

setFillRule(FillRule) - Method in class ome.xml.model.Shape

setFilter(String) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets filter.

setFilter(byte) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Filter should always be 0

setFilter(int, Filter) - Method in class ome.xml.model.Instrument

setFilterAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Filter.

setFilterAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterFilterWheel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterFilterWheel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterFilterWheel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterFilterWheel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FilterWheel property of Filter.

setFilterFilterWheel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Filter.

setFilterID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of Filter.

setFilterLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of Filter.

setFilterManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of Filter.

setFilterModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilters(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets filters

setFilterSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of Filter.

setFilterSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterSet(int, FilterSet) - Method in class ome.xml.model.Instrument

setFilterSetDichroicRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterSetDichroicRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterSetDichroicRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterSetDichroicRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the DichroicRef property of FilterSet.

setFilterSetDichroicRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterSetEmissionFilterRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterSetEmissionFilterRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterSetEmissionFilterRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterSetEmissionFilterRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the EmissionFilterRef property of FilterSet.

setFilterSetEmissionFilterRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterSetExcitationFilterRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterSetExcitationFilterRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterSetExcitationFilterRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterSetExcitationFilterRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExcitationFilterRef property of FilterSet.

setFilterSetExcitationFilterRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterSetID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterSetID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterSetID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterSetID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of FilterSet.

setFilterSetID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterSetLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterSetLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterSetLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterSetLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of FilterSet.

setFilterSetLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterSetManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterSetManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterSetManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterSetManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of FilterSet.

setFilterSetManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterSetModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterSetModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterSetModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterSetModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of FilterSet.

setFilterSetModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterSetSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterSetSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterSetSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterSetSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of FilterSet.

setFilterSetSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterType(FilterType, int, int) - Method in class ome.xml.meta.AggregateMetadata

setFilterType(FilterType, int, int) - Method in class ome.xml.meta.DummyMetadata

setFilterType(FilterType, int, int) - Method in class ome.xml.meta.FilterMetadata

setFilterType(FilterType, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Filter.

setFilterType(FilterType, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setFilterWheel(String) - Method in class ome.xml.model.Filter

setFirstC(NonNegativeInteger) - Method in class ome.xml.model.TiffData

setFirstCol(short) - Method in class loci.poi.hssf.record.DimensionsRecord

set the first column number for the sheet

setFirstCol(short) - Method in class loci.poi.hssf.record.RowRecord

set the logical col number for the first cell this row (0 based index)

setFirstColRelative(boolean) - Method in class loci.poi.hssf.record.formula.Area3DPtg

set whether the first column is relative

setFirstColRelative(boolean) - Method in class loci.poi.hssf.record.formula.AreaPtg

set whether the first column is relative

setFirstColumn(short) - Method in class loci.poi.hssf.record.ColumnInfoRecord

set the first column this record defines formatting info for

setFirstColumn(short) - Method in class loci.poi.hssf.record.formula.Area3DPtg

setFirstColumn(short) - Method in class loci.poi.hssf.record.formula.AreaPtg

set the first column in the area

setFirstColumnRaw(short) - Method in class loci.poi.hssf.record.formula.Area3DPtg

setFirstColumnRaw(short) - Method in class loci.poi.hssf.record.formula.AreaPtg

set the first column irespective of the bitmasks

setFirstName(String) - Method in class ome.xml.model.Experimenter

setFirstRow(int) - Method in class loci.poi.hssf.record.DimensionsRecord

set the first row number for the sheet

setFirstRow(short) - Method in class loci.poi.hssf.record.formula.Area3DPtg

setFirstRow(short) - Method in class loci.poi.hssf.record.formula.AreaPtg

sets the first row

setFirstRow(int) - Method in class loci.poi.hssf.record.IndexRecord

setFirstRowRelative(boolean) - Method in class loci.poi.hssf.record.formula.Area3DPtg

sets the first row to relative or not

setFirstRowRelative(boolean) - Method in class loci.poi.hssf.record.formula.AreaPtg

sets the first row to relative or not

setFirstT(NonNegativeInteger) - Method in class ome.xml.model.TiffData

setFirstTime(boolean) - Method in class loci.plugins.in.ImporterOptions

setFirstZ(NonNegativeInteger) - Method in class ome.xml.model.TiffData

setFitHeight(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

setFitHeight(short) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set the number of pages high to fit the sheet in

setFitToPage(boolean) - Method in class loci.poi.hssf.record.WSBoolRecord

fit to page option is on

setFitToPage(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

fit to page option is on

setFitWidth(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

setFitWidth(short) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set the number of pages wide to fit the sheet in

setFlag(short) - Method in class loci.poi.ddf.EscherClientAnchorRecord

0 = Move and size with Cells, 2 = Move but don't size with cells, 3 = Don't move or size with cells.

setFlag(short) - Method in class loci.poi.hssf.record.SupBookRecord

setFlag(short) - Method in class loci.poi.hssf.record.UseSelFSRecord

turn the flag on or off

setFlags(int) - Method in class loci.poi.ddf.EscherSpRecord

The flags that apply to this shape.

setFlags(short) - Method in class loci.poi.hssf.record.NoteRecord

Options flag

setFlags(short) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Set the flags field for the SheetProperties record.

setFlattenedResolutions(boolean) - Method in class loci.formats.DelegateReader

setFlattenedResolutions(boolean) - Method in class loci.formats.FormatReader

setFlattenedResolutions(boolean) - Method in interface loci.formats.IFormatReader

Set whether or not to flatten resolutions into individual series.

setFlattenedResolutions(boolean) - Method in class loci.formats.ImageReader

setFlattenedResolutions(boolean) - Method in class loci.formats.in.FilePatternReader

setFlattenedResolutions(boolean) - Method in class loci.formats.ReaderWrapper

setFloatArray(float[][]) - Method in class loci.plugins.util.RecordedImageProcessor

setFluor(String) - Method in class ome.xml.model.Channel

setFont(Font) - Method in class loci.plugins.util.RecordedImageProcessor

setFont(Font) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setFont(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics

setFont(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setFont(HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the font for this style

setFontFamily(FontFamily) - Method in class ome.xml.model.Shape

setFontHeight(short) - Method in class loci.poi.hssf.record.FontRecord

sets the height of the font in 1/20th point units

setFontHeight(short) - Method in class loci.poi.hssf.usermodel.HSSFFont

set the font height in unit's of 1/20th of a point.

setFontHeightInPoints(short) - Method in class loci.poi.hssf.usermodel.HSSFFont

set the font height

setFontIndex(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the index to the FONT record (which font to use 0 based)

setFontIndex(short) - Method in class loci.poi.hssf.record.FontIndexRecord

Set the font index field for the FontIndex record.

setFontName(String) - Method in class loci.poi.hssf.record.FontRecord

set the name of the font

setFontName(String) - Method in class loci.poi.hssf.usermodel.HSSFFont

set the name for the font (i.e.

setFontNameLength(byte) - Method in class loci.poi.hssf.record.FontRecord

set the length of the fontname string

setFontpos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

setFontSize(Length) - Method in class ome.xml.model.Shape

setFontStyle(FontStyle) - Method in class ome.xml.model.Shape

setFooter(FooterRecord) - Method in class loci.poi.hssf.model.Sheet

Sets the FooterRecord.

setFooter(String) - Method in class loci.poi.hssf.record.FooterRecord

set the footer string

setFooterLength(byte) - Method in class loci.poi.hssf.record.FooterRecord

set the length of the footer string

setFooterMargin(double) - Method in class loci.poi.hssf.record.PrintSetupRecord

setFooterMargin(double) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Sets the footer margin.

setForceThumbnails(boolean) - Method in class loci.plugins.in.ImporterOptions

setForecolorIndex(short) - Method in class loci.poi.hssf.record.AreaFormatRecord

Set the forecolor index field for the AreaFormat record.

setForegroundColor(int) - Method in class loci.poi.hssf.record.AreaFormatRecord

Set the foreground color field for the AreaFormat record.

setFormat(int) - Method in class loci.poi.hpsf.MutablePropertySet

Sets the "format" property.

setFormat(int) - Method in class loci.poi.hpsf.SpecialPropertySet

setFormat(short) - Method in class loci.poi.hssf.record.LineFormatRecord

Set the format field for the LineFormat record.

setFormatFlags(short) - Method in class loci.poi.hssf.record.AreaFormatRecord

Set the format flags field for the AreaFormat record.

setFormatFlags(short) - Method in class loci.poi.hssf.record.AreaRecord

Set the format flags field for the Area record.

setFormatFlags(short) - Method in class loci.poi.hssf.record.BarRecord

Set the format flags field for the Bar record.

setFormatFlags(short) - Method in class loci.poi.hssf.record.DataFormatRecord

Set the format flags field for the DataFormat record.

setFormatFlags(short) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Set the format flags field for the SeriesLabels record.

setFormatID(ClassID) - Method in class loci.poi.hpsf.MutableSection

Sets the section's format ID.

setFormatID(byte[]) - Method in class loci.poi.hpsf.MutableSection

Sets the section's format ID.

setFormatIndex(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the index to the Format record (which FORMAT to use 0-based)

setFormatIndex(short) - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Set the format index field for the NumberFormatIndex record.

setFormatString(String) - Method in class loci.poi.hssf.record.FormatRecord

set the format string

setFormatStringLength(byte) - Method in class loci.poi.hssf.record.FormatRecord

set the format string length

setFormatted(boolean) - Method in class loci.poi.hssf.record.RowRecord

set whether the row has been formatted (even if its got all blank cells)

setFormattingRunLength(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Set the formatting run length field for the TextObjectBase record.

setFormulaOfLink(LinkedDataFormulaField) - Method in class loci.poi.hssf.record.LinkedDataRecord

Set the formula of link field for the LinkedData record.

setFormulaRecord(FormulaRecord) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

setFormulasNotResults(boolean) - Method in class loci.poi.hssf.extractor.ExcelExtractor

Should we return the formula itself, and not the result it produces? Default is false

setFormulaTokens(Stack) - Method in class loci.poi.hssf.record.LinkedDataFormulaField

setFramesPerSecond(int) - Method in class loci.formats.FormatWriter

setFramesPerSecond(int) - Method in interface loci.formats.IFormatWriter

Sets the frames per second to use when writing.

setFramesPerSecond(int) - Method in class loci.formats.ImageWriter

setFramesPerSecond(int) - Method in class loci.formats.WriterWrapper

setFreezePanes(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

set whether the window should freeze panes

setFreezePanesNoSplit(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

freeze unsplit panes or not

setFrequencyMultiplication(PositiveInteger) - Method in class ome.xml.model.Laser

setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata

setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata

setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

setFullPrecision(boolean) - Method in class loci.poi.hssf.record.PrecisionRecord

set whether to use full precision or just skew all you figures all to hell.

setFunction(Function) - Method in class mdbtools.dbengine.sql.FunctionDef

setFunction(Aggregate) - Method in class mdbtools.dbengine.sql.FunctionDef

setGain(Double) - Method in class ome.xml.model.Detector

setGain(Double) - Method in class ome.xml.model.DetectorSettings

setGenerated(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the generated field value.

setGenericExcitationSourceAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setGenericExcitationSourceAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setGenericExcitationSourceAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setGenericExcitationSourceAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of GenericExcitationSource.

setGenericExcitationSourceAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setGenericExcitationSourceID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setGenericExcitationSourceID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setGenericExcitationSourceID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setGenericExcitationSourceID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of GenericExcitationSource.

setGenericExcitationSourceID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setGenericExcitationSourceLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setGenericExcitationSourceLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setGenericExcitationSourceLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setGenericExcitationSourceLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of GenericExcitationSource.

setGenericExcitationSourceLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setGenericExcitationSourceManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setGenericExcitationSourceManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setGenericExcitationSourceManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setGenericExcitationSourceManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of GenericExcitationSource.

setGenericExcitationSourceManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setGenericExcitationSourceMap(List<MapPair>, int, int) - Method in class ome.xml.meta.AggregateMetadata

Sets the Map value associated with this generic light source

setGenericExcitationSourceMap(List<MapPair>, int, int) - Method in class ome.xml.meta.DummyMetadata

Sets the Map value associated with this generic light source

setGenericExcitationSourceMap(List<MapPair>, int, int) - Method in class ome.xml.meta.FilterMetadata

Sets the Map value associated with this generic light source

setGenericExcitationSourceMap(List<MapPair>, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the MapAnnotation values of a GenericExcitationSource.

setGenericExcitationSourceMap(List<MapPair>, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Sets the Map value associated with this generic light source

setGenericExcitationSourceModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setGenericExcitationSourceModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setGenericExcitationSourceModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setGenericExcitationSourceModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of GenericExcitationSource.

setGenericExcitationSourceModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setGenericExcitationSourcePower(Power, int, int) - Method in class ome.xml.meta.AggregateMetadata

setGenericExcitationSourcePower(Power, int, int) - Method in class ome.xml.meta.DummyMetadata

setGenericExcitationSourcePower(Power, int, int) - Method in class ome.xml.meta.FilterMetadata

setGenericExcitationSourcePower(Power, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Power property of GenericExcitationSource.

setGenericExcitationSourcePower(Power, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setGenericExcitationSourceSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setGenericExcitationSourceSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setGenericExcitationSourceSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setGenericExcitationSourceSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of GenericExcitationSource.

setGenericExcitationSourceSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setGlobalCRC(int) - Method in class loci.common.CRC

setGoto(boolean) - Method in class loci.poi.hssf.record.formula.AttrPtg

Flags this ptg as a goto/jump

setGridset(boolean) - Method in class loci.poi.hssf.record.GridsetRecord

set whether gridlines are visible when printing

setGridsPrinted(boolean) - Method in class loci.poi.hssf.model.Sheet

set whether gridlines printed or not.

setGridsPrinted(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

set whether gridlines printed.

setGroupFiles(boolean) - Method in class loci.formats.DelegateReader

setGroupFiles(boolean) - Method in class loci.formats.FileStitcher

setGroupFiles(boolean) - Method in class loci.formats.FormatReader

setGroupFiles(boolean) - Method in interface loci.formats.IFormatReader

Specifies whether or not to force grouping in multi-file formats.

setGroupFiles(boolean) - Method in class loci.formats.ImageReader

setGroupFiles(boolean) - Method in class loci.formats.in.FilePatternReader

setGroupFiles(boolean) - Method in class loci.formats.in.ZipReader

setGroupFiles(boolean) - Method in class loci.formats.ReaderWrapper

setGroupFiles(boolean) - Method in class loci.plugins.in.ImporterOptions

setGroupFiles(String) - Method in class loci.plugins.macro.LociFunctions

setGuardBits(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets guardBits

setHashSHA1(String) - Method in class ome.xml.model.Plane

setHCenter(boolean) - Method in class loci.poi.hssf.record.HCenterRecord

set whether or not to horizonatally center this sheet.

setHeader(HeaderRecord) - Method in class loci.poi.hssf.model.Sheet

Sets the HeaderRecord.

setHeader(String) - Method in class loci.poi.hssf.record.HeaderRecord

set the header string

setHeaderColor(int) - Method in class loci.poi.hssf.record.WindowTwoRecord

set the palette index for the header color

setHeaderEncoder(HeaderEncoder) - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Keep a reference to the header encoder.

setHeaderLength(byte) - Method in class loci.poi.hssf.record.HeaderRecord

set the length of the header string

setHeaderMargin(double) - Method in class loci.poi.hssf.record.PrintSetupRecord

setHeaderMargin(double) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Sets the header margin.

setHeadingPair(byte[]) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the heading pair.

setHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

setHeight(int) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set the height of the metafile in EMU's (English Metric Units).

setHeight(int) - Method in class loci.poi.hssf.record.AxisParentRecord

Set the height field for the AxisParent record.

setHeight(int) - Method in class loci.poi.hssf.record.ChartFormatRecord

setHeight(int) - Method in class loci.poi.hssf.record.ChartRecord

Set the height field for the Chart record.

setHeight(short) - Method in class loci.poi.hssf.record.RowRecord

set the height of the row

setHeight(int) - Method in class loci.poi.hssf.record.TextRecord

Set the height field for the Text record.

setHeight(short) - Method in class loci.poi.hssf.record.WindowOneRecord

set teh height of the window

setHeight(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

set the row's height or set to ff (-1) for undefined/default-height.

setHeight(Double) - Method in class ome.xml.model.Mask

setHeight(Double) - Method in class ome.xml.model.Rectangle

setHeightBasis(short) - Method in class loci.poi.hssf.record.FontBasisRecord

Set the height basis field for the FontBasis record.

setHeightInPoints(float) - Method in class loci.poi.hssf.usermodel.HSSFRow

set the row's height in points.

setHelpTopicLength(byte) - Method in class loci.poi.hssf.record.NameRecord

sets the help topic length

setHelpTopicText(String) - Method in class loci.poi.hssf.record.NameRecord

sets the help topic text

setHidden(boolean) - Method in class loci.poi.hssf.record.ColumnInfoRecord

set whether or not these cells are hidden

setHidden(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether the cell is hidden or not

setHidden(boolean) - Method in class loci.poi.hssf.record.WindowOneRecord

set whether the window is hidden or not

setHidden(boolean) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the cell's using this style to be hidden

setHiddenCount(int) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the hidden count.

setHideObj(short) - Method in class loci.poi.hssf.record.HideObjRecord

set hide object options

setHints(int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

setHistogramRange(double, double) - Method in class loci.plugins.util.RecordedImageProcessor

setHistogramSize(int) - Method in class loci.plugins.util.RecordedImageProcessor

setHistoryBitMask(int) - Method in class loci.poi.hssf.record.BOFRecord

set the history bit mask (not very useful)

setHorizontal(boolean) - Method in class loci.poi.hssf.record.BarRecord

Sets the horizontal field value.

setHorizontalAlignment(byte) - Method in class loci.poi.hssf.record.TextRecord

Set the horizontal alignment field for the Text record.

setHorizontalBorder(boolean) - Method in class loci.poi.hssf.record.DatRecord

Sets the horizontal border field value.

setHorizontalHold(short) - Method in class loci.poi.hssf.record.WindowOneRecord

set the horizontal position of the window (in 1/20ths of a point)

setHorizontallyCenter(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

determines whether the output is horizontally centered on the page.

setHorizontalScale(int) - Method in class loci.poi.hssf.record.PlotGrowthRecord

Set the horizontalScale field for the PlotGrowth record.

setHorizontalTextAlignment(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Sets the Horizontal text alignment field value.

sethref(String) - Method in class ome.xml.model.External

setHResolution(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

setHResolution(short) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Sets the horizontal resolution.

setHumidity(PercentFraction) - Method in class ome.xml.model.ImagingEnvironment

setIconic(boolean) - Method in class loci.poi.hssf.record.WindowOneRecord

set whether the window has been iconized or not

setId(String) - Method in class loci.formats.ChannelFiller

setId(String) - Method in class loci.formats.ChannelSeparator

setId(String) - Method in class loci.formats.DelegateReader

setId(String) - Method in class loci.formats.DimensionSwapper

setId(String) - Method in class loci.formats.FileStitcher

setId(String) - Method in class loci.formats.FormatReader

Initializes a reader from the input file name.

setId(String) - Method in class loci.formats.FormatWriter

Initializes a writer from the input file name.

setId(String) - Method in interface loci.formats.IFormatHandler

Sets the current file name.

setId(String) - Method in class loci.formats.ImageReader

setId(String) - Method in class loci.formats.ImageWriter

setId(String) - Method in class loci.formats.in.JPEGReader

setId(String) - Method in class loci.formats.Memoizer

setId(String) - Method in class loci.formats.out.APNGWriter

setId(String) - Method in class loci.formats.out.AVIWriter

setId(String) - Method in class loci.formats.out.CellH5Writer

setId(String) - Method in class loci.formats.out.ICSWriter

setId(String) - Method in class loci.formats.out.JavaWriter

setId(String) - Method in class loci.formats.out.OMETiffWriter

setId(String) - Method in class loci.formats.out.OMEXMLWriter

setId(String) - Method in class loci.formats.out.QTWriter

setId(String) - Method in class loci.formats.out.TiffWriter

setId(String) - Method in class loci.formats.out.V3DrawWriter

setId(String) - Method in class loci.formats.out.WlzWriter

setId(String) - Method in class loci.formats.ReaderWrapper

setId(String) - Method in class loci.formats.TileStitcher

setId(String) - Method in class loci.formats.WriterWrapper

setId(String) - Method in class loci.plugins.in.ImporterOptions

setId() - Method in class loci.plugins.in.ImportProcess

HACK: This method mainly exists to prompt the user for a missing LuraWave license code, in the case of LWF-compressed Flex.

setId(String) - Method in class loci.plugins.macro.LociFunctions

setID(long) - Method in class loci.poi.hpsf.MutableProperty

Sets the property's ID.

setId(short) - Method in class loci.poi.hssf.record.SeriesTextRecord

Set the id field for the SeriesText record.

setId() - Method in class loci.tests.testng.OpenBytesPerformanceTest

setID(String) - Method in class ome.xml.model.Annotation

setID(String) - Method in class ome.xml.model.AnnotationRef

setID(String) - Method in class ome.xml.model.Channel

setID(String) - Method in class ome.xml.model.ChannelRef

setID(String) - Method in class ome.xml.model.Dataset

setID(String) - Method in class ome.xml.model.DatasetRef

setID(String) - Method in class ome.xml.model.Detector

setID(String) - Method in class ome.xml.model.DetectorSettings

setID(String) - Method in class ome.xml.model.Dichroic

setID(String) - Method in class ome.xml.model.DichroicRef

setID(String) - Method in class ome.xml.model.Experiment

setID(String) - Method in class ome.xml.model.Experimenter

setID(String) - Method in class ome.xml.model.ExperimenterGroup

setID(String) - Method in class ome.xml.model.ExperimenterGroupRef

setID(String) - Method in class ome.xml.model.ExperimenterRef

setID(String) - Method in class ome.xml.model.ExperimentRef

setID(String) - Method in class ome.xml.model.Filter

setID(String) - Method in class ome.xml.model.FilterRef

setID(String) - Method in class ome.xml.model.FilterSet

setID(String) - Method in class ome.xml.model.FilterSetRef

setID(String) - Method in class ome.xml.model.Image

setID(String) - Method in class ome.xml.model.ImageRef

setID(String) - Method in class ome.xml.model.Instrument

setID(String) - Method in class ome.xml.model.InstrumentRef

setID(String) - Method in class ome.xml.model.Leader

setID(String) - Method in class ome.xml.model.LightSource

setID(String) - Method in class ome.xml.model.LightSourceSettings

setID(String) - Method in class ome.xml.model.MicrobeamManipulation

setID(String) - Method in class ome.xml.model.MicrobeamManipulationRef

setID(String) - Method in class ome.xml.model.Objective

setID(String) - Method in class ome.xml.model.ObjectiveSettings

setID(String) - Method in class ome.xml.model.Pixels

setID(String) - Method in class ome.xml.model.Plate

setID(String) - Method in class ome.xml.model.PlateAcquisition

setID(String) - Method in class ome.xml.model.PlateRef

setID(String) - Method in class ome.xml.model.Project

setID(String) - Method in class ome.xml.model.ProjectRef

setID(String) - Method in class ome.xml.model.Pump

setID(String) - Method in class ome.xml.model.Reagent

setID(String) - Method in class ome.xml.model.ReagentRef

setID(String) - Method in class ome.xml.model.Reference

Sets the reference's target object ID.

setID(String) - Method in class ome.xml.model.ROI

setID(String) - Method in class ome.xml.model.ROIRef

setID(String) - Method in class ome.xml.model.Screen

setID(String) - Method in class ome.xml.model.Shape

setID(String) - Method in class ome.xml.model.Well

setID(String) - Method in class ome.xml.model.WellSample

setID(String) - Method in class ome.xml.model.WellSampleRef

setIdMap(HashMap<String, Object>) - Static method in class loci.common.Location

Set the id mapping using the given HashMap.

setIFD(NonNegativeInteger) - Method in class ome.xml.model.TiffData

setIlluminationType(IlluminationType) - Method in class ome.xml.model.Channel

setImage(BufferedImage) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the image field.

setImage(BufferedImage) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setImage(int, Image) - Method in class ome.xml.model.OME

setImageAcquisitionDate(Timestamp, int) - Method in class ome.xml.meta.AggregateMetadata

setImageAcquisitionDate(Timestamp, int) - Method in class ome.xml.meta.DummyMetadata

setImageAcquisitionDate(Timestamp, int) - Method in class ome.xml.meta.FilterMetadata

setImageAcquisitionDate(Timestamp, int) - Method in interface ome.xml.meta.MetadataStore

Set the AcquisitionDate property of Image.

setImageAcquisitionDate(Timestamp, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setImageAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setImageAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setImageAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Image.

setImageAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setImageDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setImageDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setImageDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of Image.

setImageDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageExperimenterGroupRef(String, int) - Method in class ome.xml.meta.AggregateMetadata

setImageExperimenterGroupRef(String, int) - Method in class ome.xml.meta.DummyMetadata

setImageExperimenterGroupRef(String, int) - Method in class ome.xml.meta.FilterMetadata

setImageExperimenterGroupRef(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimenterGroupRef property of Image.

setImageExperimenterGroupRef(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageExperimenterRef(String, int) - Method in class ome.xml.meta.AggregateMetadata

setImageExperimenterRef(String, int) - Method in class ome.xml.meta.DummyMetadata

setImageExperimenterRef(String, int) - Method in class ome.xml.meta.FilterMetadata

setImageExperimenterRef(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimenterRef property of Image.

setImageExperimenterRef(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageExperimentRef(String, int) - Method in class ome.xml.meta.AggregateMetadata

setImageExperimentRef(String, int) - Method in class ome.xml.meta.DummyMetadata

setImageExperimentRef(String, int) - Method in class ome.xml.meta.FilterMetadata

setImageExperimentRef(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimentRef property of Image.

setImageExperimentRef(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setImageID(String, int) - Method in class ome.xml.meta.DummyMetadata

setImageID(String, int) - Method in class ome.xml.meta.FilterMetadata

setImageID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Image.

setImageID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageInstrumentRef(String, int) - Method in class ome.xml.meta.AggregateMetadata

setImageInstrumentRef(String, int) - Method in class ome.xml.meta.DummyMetadata

setImageInstrumentRef(String, int) - Method in class ome.xml.meta.FilterMetadata

setImageInstrumentRef(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the InstrumentRef property of Image.

setImageInstrumentRef(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageMicrobeamManipulationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setImageMicrobeamManipulationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setImageMicrobeamManipulationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setImageMicrobeamManipulationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the MicrobeamManipulationRef property of Image.

setImageMicrobeamManipulationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setImageName(String, int) - Method in class ome.xml.meta.DummyMetadata

setImageName(String, int) - Method in class ome.xml.meta.FilterMetadata

setImageName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of Image.

setImageName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImageROIRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setImageROIRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setImageROIRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setImageROIRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ROIRef property of Image.

setImageROIRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImages(BufferedImage[]) - Method in class loci.formats.gui.ImageViewer

Sets the viewer to display the given images.

setImages(IFormatReader, BufferedImage[]) - Method in class loci.formats.gui.ImageViewer

Sets the viewer to display the given images, obtaining corresponding core metadata from the specified format reader.

setImagingEnvironment(ImagingEnvironment) - Method in class ome.xml.model.Image

setImagingEnvironmentAirPressure(Pressure, int) - Method in class ome.xml.meta.AggregateMetadata

setImagingEnvironmentAirPressure(Pressure, int) - Method in class ome.xml.meta.DummyMetadata

setImagingEnvironmentAirPressure(Pressure, int) - Method in class ome.xml.meta.FilterMetadata

setImagingEnvironmentAirPressure(Pressure, int) - Method in interface ome.xml.meta.MetadataStore

Set the AirPressure property of ImagingEnvironment.

setImagingEnvironmentAirPressure(Pressure, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImagingEnvironmentCO2Percent(PercentFraction, int) - Method in class ome.xml.meta.AggregateMetadata

setImagingEnvironmentCO2Percent(PercentFraction, int) - Method in class ome.xml.meta.DummyMetadata

setImagingEnvironmentCO2Percent(PercentFraction, int) - Method in class ome.xml.meta.FilterMetadata

setImagingEnvironmentCO2Percent(PercentFraction, int) - Method in interface ome.xml.meta.MetadataStore

Set the CO2Percent property of ImagingEnvironment.

setImagingEnvironmentCO2Percent(PercentFraction, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImagingEnvironmentHumidity(PercentFraction, int) - Method in class ome.xml.meta.AggregateMetadata

setImagingEnvironmentHumidity(PercentFraction, int) - Method in class ome.xml.meta.DummyMetadata

setImagingEnvironmentHumidity(PercentFraction, int) - Method in class ome.xml.meta.FilterMetadata

setImagingEnvironmentHumidity(PercentFraction, int) - Method in interface ome.xml.meta.MetadataStore

Set the Humidity property of ImagingEnvironment.

setImagingEnvironmentHumidity(PercentFraction, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImagingEnvironmentMap(List<MapPair>, int) - Method in class ome.xml.meta.AggregateMetadata

Sets the Map value associated with this imaging environment

setImagingEnvironmentMap(List<MapPair>, int) - Method in class ome.xml.meta.DummyMetadata

Sets the Map value associated with this imaging environment

setImagingEnvironmentMap(List<MapPair>, int) - Method in class ome.xml.meta.FilterMetadata

Sets the Map value associated with this imaging environment

setImagingEnvironmentMap(List<MapPair>, int) - Method in interface ome.xml.meta.MetadataStore

Set the MapAnnotation values of an ImagingEnvironment.

setImagingEnvironmentMap(List<MapPair>, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Sets the Map value associated with this imaging environment

setImagingEnvironmentTemperature(Temperature, int) - Method in class ome.xml.meta.AggregateMetadata

setImagingEnvironmentTemperature(Temperature, int) - Method in class ome.xml.meta.DummyMetadata

setImagingEnvironmentTemperature(Temperature, int) - Method in class ome.xml.meta.FilterMetadata

setImagingEnvironmentTemperature(Temperature, int) - Method in interface ome.xml.meta.MetadataStore

Set the Temperature property of ImagingEnvironment.

setImagingEnvironmentTemperature(Temperature, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setImg(BufferedImage) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setImgResLevel(int) - Method in interface jj2000.j2k.wavelet.synthesis.InvWT

Sets the image reconstruction resolution level.

setImgResLevel(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Sets the image reconstruction resolution level.

setImmersion(Immersion) - Method in class ome.xml.model.Objective

setIncludeSheetNames(boolean) - Method in class loci.poi.hssf.extractor.ExcelExtractor

Should sheet names be included? Default is true

setIndent(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set indention (not sure of the units, think its spaces)

setIndention(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the number of spaces to indent the text in the cell

setIndentionOptions(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the indent options bitmask (see corresponding bitmask setters that reference this field)

setIndentNotParentAlignment(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether or not to use the alignment in this XF instead of the parent XF.

setIndentNotParentBorder(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether or not to use the border in this XF instead of the parent XF.

setIndentNotParentCellOptions(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether or not to use the locking/hidden in this XF instead of the parent XF.

setIndentNotParentFont(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether or not to use the font in this XF instead of the parent XF.

setIndentNotParentFormat(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether or not to use the format in this XF instead of the parent XF.

setIndentNotParentPattern(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Sets whether or not to use the pattern in this XF instead of the parent XF (foreground/background).

setIndex(int) - Method in class loci.formats.in.BaseZeissReader.Tag

setIndex(short) - Method in class loci.poi.hssf.record.SeriesIndexRecord

Set the index field for the SeriesIndex record.

setIndex(short) - Method in class loci.poi.hssf.record.StyleRecord

set the entire index field (including the type) (see bit setters that reference this method)

setIndex(int) - Method in class loci.poi.poifs.property.Property

Set the index for this Property

setIndex(NonNegativeInteger) - Method in class ome.xml.model.WellSample

setIndexCode(short) - Method in class loci.poi.hssf.record.FormatRecord

set the format index code (for built in formats)

setIndexNumberFmtRecord(short) - Method in class loci.poi.hssf.record.LinkedDataRecord

Set the index number fmt record field for the LinkedData record.

setIndexOfColorValue(short) - Method in class loci.poi.hssf.record.TextRecord

Set the index of color value field for the Text record.

setIndexToFirstSupBook(short) - Method in class loci.poi.hssf.record.ExternSheetSubRecord

sets the index to first sheet in supbook

setIndexToFontTable(short) - Method in class loci.poi.hssf.record.FontBasisRecord

Set the index to font table field for the FontBasis record.

setIndexToLastSupBook(short) - Method in class loci.poi.hssf.record.ExternSheetSubRecord

sets the index to last sheet in supbook

setIndexToSupBook(short) - Method in class loci.poi.hssf.record.ExternSheetSubRecord

Sets the Index to the sup book

setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Overrides the method defined in the superclass.

setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Overrides the method defined in the superclass.

setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Overrides the method defined in the superclass.

setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Overrides the method defined in the superclass.

setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

Overrides the method defined in the superclass.

setInput(RandomAccessIO) - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader

Sets the underlying byte based input to the given object.

setInput(ByteArrayInputStream) - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader

Sets the underlying byte based input to the given object.

setInputOrder(int, String) - Method in class loci.plugins.in.ImporterOptions

setInstitution(String) - Method in class ome.xml.model.Experimenter

setInstrument(Instrument) - Method in class ome.xml.model.Detector

setInstrument(Instrument) - Method in class ome.xml.model.Dichroic

setInstrument(Instrument) - Method in class ome.xml.model.Filter

setInstrument(Instrument) - Method in class ome.xml.model.FilterSet

setInstrument(Instrument) - Method in class ome.xml.model.LightSource

setInstrument(Instrument) - Method in class ome.xml.model.Objective

setInstrument(int, Instrument) - Method in class ome.xml.model.OME

setInstrumentAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setInstrumentAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setInstrumentAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setInstrumentAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Instrument.

setInstrumentAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setInstrumentID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setInstrumentID(String, int) - Method in class ome.xml.meta.DummyMetadata

setInstrumentID(String, int) - Method in class ome.xml.meta.FilterMetadata

setInstrumentID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Instrument.

setInstrumentID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setIntArray(int[][]) - Method in class loci.plugins.util.RecordedImageProcessor

setIntegration(PositiveInteger) - Method in class ome.xml.model.DetectorSettings

setIntensity(boolean) - Method in class loci.formats.in.SDTReader

Toggles whether the reader should return intensity data only (the sum of each lifetime histogram).

setInterleaved(boolean) - Method in class loci.formats.FormatWriter

setInterleaved(boolean) - Method in interface loci.formats.IFormatWriter

Sets whether or not the channels in an image are interleaved.

setInterleaved(boolean) - Method in class loci.formats.ImageWriter

setInterleaved(boolean) - Method in class loci.formats.WriterWrapper

setInterleaved(Boolean) - Method in class ome.xml.model.Pixels

setInterpolate(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

setInvert(boolean) - Method in class loci.poi.hssf.record.AreaFormatRecord

Sets the invert field value.

setIris(Boolean) - Method in class ome.xml.model.Objective

setIsDate(boolean) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Sets the isDate field value.

setIsNeeded(boolean) - Method in class loci.poi.hssf.record.RecalcIdRecord

setItalic(boolean) - Method in class loci.poi.hssf.record.FontRecord

set the font to be italics or not

setItalic(boolean) - Method in class loci.poi.hssf.usermodel.HSSFFont

set whether to use italics or not

setIteration(boolean) - Method in class loci.poi.hssf.record.IterationRecord

set whether or not to iterate for calculations

setIterations(short) - Method in class loci.poi.hssf.record.CalcCountRecord

set the number of iterations to perform

setJPEGImage(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Associate the JPEG image of length imageSize bytes stored in jpegImage with this decompressor instance.

setJPEGQuality(int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Set the JPEG image quality level for subsequent compress operations.

setJustification(int) - Method in class loci.plugins.util.RecordedImageProcessor

setJustifyLast(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Dunno.

setKey(int) - Method in class loci.formats.in.BaseZeissReader.Tag

setKeyboardShortcut(byte) - Method in class loci.poi.hssf.record.NameRecord

sets the keyboard shortcut

setKeyValue(String, String) - Method in class loci.formats.meta.OriginalMetadataAnnotation

Set the key/value metadata pair for this annotation.

setKeywords(String) - Method in class loci.poi.hpsf.SummaryInformation

Sets the keywords.

setLabelAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Label.

setLabelAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelAsPercentage(boolean) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Sets the label as percentage field value.

setLabelColorRgb(int) - Method in class loci.poi.hssf.record.TickRecord

Set the label color rgb field for the Tick record.

setLabelFillColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelFillColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelFillColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelFillColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillColor property of Label.

setLabelFillColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelFillRule(FillRule, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelFillRule(FillRule, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelFillRule(FillRule, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelFillRule(FillRule, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillRule property of Label.

setLabelFillRule(FillRule, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelFontFamily(FontFamily, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontFamily property of Label.

setLabelFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelFontSize(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelFontSize(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelFontSize(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelFontSize(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontSize property of Label.

setLabelFontSize(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelFontStyle(FontStyle, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontStyle property of Label.

setLabelFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelFrequency(short) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Set the label frequency field for the CategorySeriesAxis record.

setLabelID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Label.

setLabelID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelLineCap(LineCap, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelLineCap(LineCap, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelLineCap(LineCap, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelLineCap(LineCap, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LineCap property of Label.

setLabelLineCap(LineCap, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelLocked(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelLocked(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelLocked(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelLocked(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Locked property of Label.

setLabelLocked(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelPosition(byte) - Method in class loci.poi.hssf.record.TickRecord

Set the label position field for the Tick record.

setLabelStrokeColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelStrokeColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelStrokeColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelStrokeColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeColor property of Label.

setLabelStrokeColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelStrokeDashArray(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelStrokeDashArray(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelStrokeDashArray(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelStrokeDashArray(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeDashArray property of Label.

setLabelStrokeDashArray(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelStrokeWidth(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelStrokeWidth(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelStrokeWidth(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelStrokeWidth(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeWidth property of Label.

setLabelStrokeWidth(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelText(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelText(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelText(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelText(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Text property of Label.

setLabelText(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelTheC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheC property of Label.

setLabelTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelTheT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheT property of Label.

setLabelTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelTheZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheZ property of Label.

setLabelTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelTransform(AffineTransform, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelTransform(AffineTransform, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelTransform(AffineTransform, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelTransform(AffineTransform, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Transform property of Label.

setLabelTransform(AffineTransform, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelVisible(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelVisible(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelVisible(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelVisible(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Visible property of Label.

setLabelVisible(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelX(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelX(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelX(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelX(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the X property of Label.

setLabelX(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLabelY(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLabelY(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setLabelY(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setLabelY(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Y property of Label.

setLabelY(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLandscape(boolean) - Method in class loci.poi.hssf.record.PrintSetupRecord

setLandscape(boolean) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set whether to print in landscape

setLaserAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Laser.

setLaserAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserFrequencyMultiplication(PositiveInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserFrequencyMultiplication(PositiveInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserFrequencyMultiplication(PositiveInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserFrequencyMultiplication(PositiveInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FrequencyMultiplication property of Laser.

setLaserFrequencyMultiplication(PositiveInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Laser.

setLaserID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserLaserMedium(LaserMedium, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserLaserMedium(LaserMedium, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserLaserMedium(LaserMedium, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserLaserMedium(LaserMedium, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LaserMedium property of Laser.

setLaserLaserMedium(LaserMedium, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of Laser.

setLaserLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of Laser.

setLaserManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserMedium(LaserMedium) - Method in class ome.xml.model.Laser

setLaserModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of Laser.

setLaserModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserPockelCell(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserPockelCell(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserPockelCell(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserPockelCell(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PockelCell property of Laser.

setLaserPockelCell(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserPower(Power, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserPower(Power, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserPower(Power, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserPower(Power, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Power property of Laser.

setLaserPower(Power, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserPulse(Pulse, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserPulse(Pulse, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserPulse(Pulse, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserPulse(Pulse, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Pulse property of Laser.

setLaserPulse(Pulse, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserPump(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserPump(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserPump(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserPump(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Pump property of Laser.

setLaserPump(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserRepetitionRate(Frequency, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserRepetitionRate(Frequency, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserRepetitionRate(Frequency, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserRepetitionRate(Frequency, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the RepetitionRate property of Laser.

setLaserRepetitionRate(Frequency, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of Laser.

setLaserSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserTuneable(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserTuneable(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserTuneable(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserTuneable(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Tuneable property of Laser.

setLaserTuneable(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserType(LaserType, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserType(LaserType, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserType(LaserType, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserType(LaserType, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Laser.

setLaserType(LaserType, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLaserWavelength(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLaserWavelength(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setLaserWavelength(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setLaserWavelength(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Wavelength property of Laser.

setLaserWavelength(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLastAuthor(String) - Method in class loci.poi.hpsf.SummaryInformation

Sets the last author.

setLastCol(short) - Method in class loci.poi.hssf.record.DimensionsRecord

set the last col number for the sheet

setLastCol(short) - Method in class loci.poi.hssf.record.RowRecord

set the logical col number for the last cell this row (0 based index)

setLastColRelative(boolean) - Method in class loci.poi.hssf.record.formula.Area3DPtg

set whether the last column should be relative or not

setLastColRelative(boolean) - Method in class loci.poi.hssf.record.formula.AreaPtg

set whether the last column should be relative or not

setLastColumn(short) - Method in class loci.poi.hssf.record.ColumnInfoRecord

set the last column this record defines formatting info for

setLastColumn(short) - Method in class loci.poi.hssf.record.formula.Area3DPtg

setLastColumn(short) - Method in class loci.poi.hssf.record.formula.AreaPtg

set the last column in the area

setLastColumnRaw(short) - Method in class loci.poi.hssf.record.formula.Area3DPtg

setLastColumnRaw(short) - Method in class loci.poi.hssf.record.formula.AreaPtg

set the last column irrespective of the bitmasks

setLastMSOSPID(int) - Method in class loci.poi.ddf.EscherDgRecord

The last shape id used in this drawing group.

setLastName(String) - Method in class ome.xml.model.Experimenter

setLastPrinted(Date) - Method in class loci.poi.hpsf.SummaryInformation

Sets the lastPrinted.

setLastRow(int) - Method in class loci.poi.hssf.record.DimensionsRecord

set the last row number for the sheet

setLastRow(short) - Method in class loci.poi.hssf.record.formula.Area3DPtg

setLastRow(short) - Method in class loci.poi.hssf.record.formula.AreaPtg

setLastRowAdd1(int) - Method in class loci.poi.hssf.record.IndexRecord

setLastRowRelative(boolean) - Method in class loci.poi.hssf.record.formula.Area3DPtg

set whether the last row is relative or not

setLastRowRelative(boolean) - Method in class loci.poi.hssf.record.formula.AreaPtg

set whether the last row is relative or not

setLastSaveDateTime(Date) - Method in class loci.poi.hpsf.SummaryInformation

Sets the total time spent in editing the document.

setLayers(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets the layers

setLeft(String) - Method in class loci.poi.hssf.usermodel.HSSFFooter

Sets the left string.

setLeft(String) - Method in class loci.poi.hssf.usermodel.HSSFHeader

Sets the left string.

setLeft(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree.Node

Set this node's left node

setLeft(Object) - Method in class mdbtools.dbengine.sql.Condition

setLeft(Object) - Method in class mdbtools.dbengine.sql.Equation

setLeft(Object) - Method in class mdbtools.dbengine.sql.Join

setLeftBorderColor(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the color to use for the left border

setLeftBorderPaletteIdx(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the palette index for the left border color

setLeftCol(short) - Method in class loci.poi.hssf.model.Sheet

Sets the left column to show in desktop window pane.

setLeftCol(short) - Method in class loci.poi.hssf.record.WindowTwoRecord

set the leftmost column displayed in the window

setLeftColumn(short) - Method in class loci.poi.hssf.record.PaneRecord

Set the left column field for the Pane record.

setLeftRowGutter(short) - Method in class loci.poi.hssf.record.GutsRecord

set the size of the gutter that appears at the left of the rows

setLeftToRight(boolean) - Method in class loci.poi.hssf.record.PrintSetupRecord

setLeftToRight(boolean) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set whether to go left to right or top down in ordering

setLegacy(boolean) - Method in class loci.formats.DelegateReader

Sets whether to use the legacy reader by default.

setLegacy(boolean) - Method in class loci.formats.in.PictReader

Control whether or not legacy reader (QT Java) is used.

setLenCalcType(int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

Set the length calculation type to the specified type

setLength(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Sets the box length to the provided value.

setLength(long) - Method in class loci.common.AbstractNIOHandle

Sets the new length of the handle.

setLength(long) - Method in class loci.common.ByteArrayHandle

setLength(long) - Method in class loci.common.NIOFileHandle

setLength(long) - Method in class loci.common.RandomAccessInputStream

Sets the length of the stream.

setLength(NonNegativeLong) - Method in class ome.xml.model.BinData

setLenRefSubexpression(int) - Method in class loci.poi.hssf.record.formula.MemFuncPtg

setLensNA(Double) - Method in class ome.xml.model.Objective

setLicenseCode(String) - Method in interface loci.formats.services.LuraWaveService

Overrides the license code to use when initializing the LuraWave decoder.

setLicenseCode(String) - Method in class loci.formats.services.LuraWaveServiceImpl

setLightEmittingDiodeAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightEmittingDiodeAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightEmittingDiodeAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightEmittingDiodeAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of LightEmittingDiode.

setLightEmittingDiodeAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightEmittingDiodeID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightEmittingDiodeID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightEmittingDiodeID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightEmittingDiodeID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of LightEmittingDiode.

setLightEmittingDiodeID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightEmittingDiodeLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightEmittingDiodeLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightEmittingDiodeLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightEmittingDiodeLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of LightEmittingDiode.

setLightEmittingDiodeLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightEmittingDiodeManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightEmittingDiodeManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightEmittingDiodeManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightEmittingDiodeManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of LightEmittingDiode.

setLightEmittingDiodeManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightEmittingDiodeModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightEmittingDiodeModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightEmittingDiodeModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightEmittingDiodeModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of LightEmittingDiode.

setLightEmittingDiodeModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightEmittingDiodePower(Power, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightEmittingDiodePower(Power, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightEmittingDiodePower(Power, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightEmittingDiodePower(Power, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Power property of LightEmittingDiode.

setLightEmittingDiodePower(Power, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightEmittingDiodeSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightEmittingDiodeSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightEmittingDiodeSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightEmittingDiodeSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of LightEmittingDiode.

setLightEmittingDiodeSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightPath(LightPath) - Method in class ome.xml.model.Channel

setLightPathAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightPathAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightPathAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightPathAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of LightPath.

setLightPathAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightPathDichroicRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightPathDichroicRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightPathDichroicRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightPathDichroicRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the DichroicRef property of LightPath.

setLightPathDichroicRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightPathEmissionFilterRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightPathEmissionFilterRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightPathEmissionFilterRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightPathEmissionFilterRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the EmissionFilterRef property of LightPath.

setLightPathEmissionFilterRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightPathExcitationFilterRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLightPathExcitationFilterRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setLightPathExcitationFilterRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setLightPathExcitationFilterRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExcitationFilterRef property of LightPath.

setLightPathExcitationFilterRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLightSource(int, LightSource) - Method in class ome.xml.model.Instrument

setLightSource(LightSource) - Method in class ome.xml.model.LightSourceSettings

setLightSourceSettings(LightSourceSettings) - Method in class ome.xml.model.Channel

setLightSourceSettings(int, LightSourceSettings) - Method in class ome.xml.model.MicrobeamManipulation

setLineAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Line.

setLineAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineCap(LineCap) - Method in class ome.xml.model.Shape

setLineColor(int) - Method in class loci.poi.hssf.record.LineFormatRecord

Set the line color field for the LineFormat record.

setLineCount(int) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the line count.

setLineFillColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineFillColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineFillColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineFillColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillColor property of Line.

setLineFillColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineFillRule(FillRule, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineFillRule(FillRule, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineFillRule(FillRule, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineFillRule(FillRule, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillRule property of Line.

setLineFillRule(FillRule, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineFontFamily(FontFamily, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontFamily property of Line.

setLineFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineFontSize(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineFontSize(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineFontSize(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineFontSize(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontSize property of Line.

setLineFontSize(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineFontStyle(FontStyle, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontStyle property of Line.

setLineFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Line.

setLineID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineLineCap(LineCap, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineLineCap(LineCap, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineLineCap(LineCap, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineLineCap(LineCap, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LineCap property of Line.

setLineLineCap(LineCap, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineLocked(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineLocked(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineLocked(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineLocked(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Locked property of Line.

setLineLocked(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineMarkerEnd(Marker, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineMarkerEnd(Marker, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineMarkerEnd(Marker, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineMarkerEnd(Marker, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the MarkerEnd property of Line.

setLineMarkerEnd(Marker, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineMarkerStart(Marker, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineMarkerStart(Marker, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineMarkerStart(Marker, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineMarkerStart(Marker, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the MarkerStart property of Line.

setLineMarkerStart(Marker, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLinePattern(short) - Method in class loci.poi.hssf.record.LineFormatRecord

Set the line pattern field for the LineFormat record.

setLineStrokeColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineStrokeColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineStrokeColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineStrokeColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeColor property of Line.

setLineStrokeColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineStrokeDashArray(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineStrokeDashArray(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineStrokeDashArray(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineStrokeDashArray(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeDashArray property of Line.

setLineStrokeDashArray(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineStrokeWidth(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineStrokeWidth(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineStrokeWidth(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineStrokeWidth(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeWidth property of Line.

setLineStrokeWidth(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineStyle(int) - Method in class loci.poi.hssf.usermodel.HSSFShape

Sets the line style.

setLineStyleColor(int) - Method in class loci.poi.hssf.usermodel.HSSFShape

The color applied to the lines of this shape.

setLineStyleColor(int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFShape

The color applied to the lines of this shape.

setLineText(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineText(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineText(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineText(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Text property of Line.

setLineText(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineTheC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheC property of Line.

setLineTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineTheT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheT property of Line.

setLineTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineTheZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheZ property of Line.

setLineTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineTransform(AffineTransform, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineTransform(AffineTransform, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineTransform(AffineTransform, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineTransform(AffineTransform, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Transform property of Line.

setLineTransform(AffineTransform, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineVisible(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineVisible(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineVisible(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineVisible(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Visible property of Line.

setLineVisible(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineWidth(int) - Method in class jj2000.j2k.util.MsgPrinter

Sets the line width to the specified value.

setLineWidth(int) - Method in class loci.plugins.util.RecordedImageProcessor

setLineWidth(int) - Method in class loci.poi.hssf.usermodel.HSSFShape

Sets the width of the line.

setLineX1(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineX1(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineX1(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineX1(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the X1 property of Line.

setLineX1(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineX2(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineX2(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineX2(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineX2(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the X2 property of Line.

setLineX2(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineY1(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineY1(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineY1(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineY1(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Y1 property of Line.

setLineY1(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLineY2(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLineY2(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setLineY2(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setLineY2(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Y2 property of Line.

setLineY2(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLink1(short) - Method in class loci.poi.hssf.record.ObjectLinkRecord

Set the link 1 field for the ObjectLink record.

setLink2(short) - Method in class loci.poi.hssf.record.ObjectLinkRecord

Set the link 2 field for the ObjectLink record.

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Annotation

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Channel

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Dataset

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Detector

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Dichroic

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Experimenter

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.ExperimenterGroup

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Filter

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Image

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Instrument

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.LightPath

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.LightSource

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Objective

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Plane

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Plate

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.PlateAcquisition

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Project

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Reagent

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.ROI

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Screen

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Shape

setLinkedAnnotation(int, Annotation) - Method in class ome.xml.model.Well

setLinkedChannel(int, Channel) - Method in class ome.xml.model.Annotation

setLinkedChannel(int, Channel) - Method in class ome.xml.model.FilterSet

setLinkedDataset(int, Dataset) - Method in class ome.xml.model.Annotation

setLinkedDataset(int, Dataset) - Method in class ome.xml.model.Experimenter

setLinkedDataset(int, Dataset) - Method in class ome.xml.model.ExperimenterGroup

setLinkedDataset(int, Dataset) - Method in class ome.xml.model.Image

setLinkedDataset(int, Dataset) - Method in class ome.xml.model.Project

setLinkedDetector(int, Detector) - Method in class ome.xml.model.Annotation

setLinkedDichroic(int, Dichroic) - Method in class ome.xml.model.Annotation

setLinkedEmissionFilter(int, Filter) - Method in class ome.xml.model.FilterSet

setLinkedEmissionFilter(int, Filter) - Method in class ome.xml.model.LightPath

setLinkedExcitationFilter(int, Filter) - Method in class ome.xml.model.FilterSet

setLinkedExcitationFilter(int, Filter) - Method in class ome.xml.model.LightPath

setLinkedExperiment(int, Experiment) - Method in class ome.xml.model.Experimenter

setLinkedExperimenter(int, Experimenter) - Method in class ome.xml.model.Annotation

setLinkedExperimenter(int, Experimenter) - Method in class ome.xml.model.ExperimenterGroup

setLinkedExperimenterGroup(int, ExperimenterGroup) - Method in class ome.xml.model.Annotation

setLinkedExperimenterGroup(int, ExperimenterGroup) - Method in class ome.xml.model.Experimenter

setLinkedExperimenterGroup(int, ExperimenterGroup) - Method in class ome.xml.model.Leader

setLinkedFilter(int, Filter) - Method in class ome.xml.model.Annotation

setLinkedFilterSet(int, FilterSet) - Method in class ome.xml.model.Dichroic

setLinkedFilterSetEmissionFilter(int, FilterSet) - Method in class ome.xml.model.Filter

setLinkedFilterSetExcitationFilter(int, FilterSet) - Method in class ome.xml.model.Filter

setLinkedImage(int, Image) - Method in class ome.xml.model.Annotation

setLinkedImage(int, Image) - Method in class ome.xml.model.Dataset

setLinkedImage(int, Image) - Method in class ome.xml.model.Experiment

setLinkedImage(int, Image) - Method in class ome.xml.model.Experimenter

setLinkedImage(int, Image) - Method in class ome.xml.model.ExperimenterGroup

setLinkedImage(int, Image) - Method in class ome.xml.model.Instrument

setLinkedImage(int, Image) - Method in class ome.xml.model.MicrobeamManipulation

setLinkedImage(int, Image) - Method in class ome.xml.model.ROI

setLinkedInstrument(int, Instrument) - Method in class ome.xml.model.Annotation

setLinkedLaser(int, Laser) - Method in class ome.xml.model.Pump

setLinkedLeader(int, Experimenter) - Method in class ome.xml.model.ExperimenterGroup

setLinkedLightPath(int, LightPath) - Method in class ome.xml.model.Annotation

setLinkedLightPath(int, LightPath) - Method in class ome.xml.model.Dichroic

setLinkedLightPathEmissionFilter(int, LightPath) - Method in class ome.xml.model.Filter

setLinkedLightPathExcitationFilter(int, LightPath) - Method in class ome.xml.model.Filter

setLinkedLightSource(int, LightSource) - Method in class ome.xml.model.Annotation

setLinkedMicrobeamManipulation(int, MicrobeamManipulation) - Method in class ome.xml.model.Experimenter

setLinkedMicrobeamManipulation(int, MicrobeamManipulation) - Method in class ome.xml.model.Image

setLinkedMicrobeamManipulation(int, MicrobeamManipulation) - Method in class ome.xml.model.ROI

setLinkedObjective(int, Objective) - Method in class ome.xml.model.Annotation

setLinkedPlane(int, Plane) - Method in class ome.xml.model.Annotation

setLinkedPlate(int, Plate) - Method in class ome.xml.model.Annotation

setLinkedPlate(int, Plate) - Method in class ome.xml.model.Screen

setLinkedPlateAcquisition(int, PlateAcquisition) - Method in class ome.xml.model.Annotation

setLinkedPlateAcquisition(int, PlateAcquisition) - Method in class ome.xml.model.WellSample

setLinkedProject(int, Project) - Method in class ome.xml.model.Annotation

setLinkedProject(int, Project) - Method in class ome.xml.model.Dataset

setLinkedProject(int, Project) - Method in class ome.xml.model.Experimenter

setLinkedProject(int, Project) - Method in class ome.xml.model.ExperimenterGroup

setLinkedReagent(int, Reagent) - Method in class ome.xml.model.Annotation

setLinkedROI(int, ROI) - Method in class ome.xml.model.Annotation

setLinkedROI(int, ROI) - Method in class ome.xml.model.Image

setLinkedROI(int, ROI) - Method in class ome.xml.model.MicrobeamManipulation

setLinkedScreen(int, Screen) - Method in class ome.xml.model.Annotation

setLinkedScreen(int, Screen) - Method in class ome.xml.model.Plate

setLinkedShape(int, Shape) - Method in class ome.xml.model.Annotation

setLinkedWell(int, Well) - Method in class ome.xml.model.Annotation

setLinkedWell(int, Well) - Method in class ome.xml.model.Reagent

setLinkedWellSample(int, WellSample) - Method in class ome.xml.model.Image

setLinkedWellSample(int, WellSample) - Method in class ome.xml.model.PlateAcquisition

setLinksDirty(boolean) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the linksDirty.

setLinkType(byte) - Method in class loci.poi.hssf.record.LinkedDataRecord

Set the link type field for the LinkedData record.

setList(boolean) - Method in class loci.poi.hssf.dev.FormulaViewer

setListAnnotation(int, ListAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setListAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setListAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setListAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setListAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of ListAnnotation.

setListAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setListAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setListAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setListAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setListAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of ListAnnotation.

setListAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setListAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setListAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setListAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setListAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of ListAnnotation.

setListAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setListAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setListAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setListAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setListAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of ListAnnotation.

setListAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setListAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setListAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setListAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setListAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of ListAnnotation.

setListAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLittleEndian(boolean) - Method in class loci.formats.tiff.TiffSaver

Sets whether or not little-endian data should be written.

setLoc(int) - Method in class loci.poi.hssf.model.Sheet

set the locator for where we should look for the next value record.

setLocation(String) - Method in class loci.plugins.in.ImporterOptions

setLocked(boolean) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Sets the locked field value.

setLocked(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether the cell is locked or not

setLocked(boolean) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the cell's using this style to be locked

setLocked(Boolean) - Method in class ome.xml.model.Shape

setLogarithmicScale(boolean) - Method in class loci.poi.hssf.record.ValueRangeRecord

Sets the logarithmic scale field value.

setLogUnsupportedTypes(boolean) - Static method in class loci.poi.hpsf.VariantSupport

Specifies whether warnings about unsupported variant types are to be written to System.err or not.

setLongAnnotation(int, LongAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setLongAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setLongAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setLongAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setLongAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of LongAnnotation.

setLongAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLongAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setLongAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setLongAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setLongAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of LongAnnotation.

setLongAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLongAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setLongAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setLongAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setLongAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of LongAnnotation.

setLongAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLongAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setLongAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setLongAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setLongAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of LongAnnotation.

setLongAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLongAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setLongAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setLongAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setLongAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of LongAnnotation.

setLongAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLongAnnotationValue(Long, int) - Method in class ome.xml.meta.AggregateMetadata

setLongAnnotationValue(Long, int) - Method in class ome.xml.meta.DummyMetadata

setLongAnnotationValue(Long, int) - Method in class ome.xml.meta.FilterMetadata

setLongAnnotationValue(Long, int) - Method in interface ome.xml.meta.MetadataStore

Set the Value property of LongAnnotation.

setLongAnnotationValue(Long, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setLossless(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets lossless.

setLossless(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets lossless

setLotNumber(String) - Method in class ome.xml.model.ManufacturerSpec

setLutAnimation(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

setLUTs(LUT[]) - Method in class loci.plugins.util.VirtualImagePlus

setMacoutline(boolean) - Method in class loci.poi.hssf.record.FontRecord

whether to use the mac outline font style thing (mac only) - Some mac person should comment this instead of me doing it (since I have no idea)

setMacshadow(boolean) - Method in class loci.poi.hssf.record.FontRecord

whether to use the mac shado font style thing (mac only) - Some mac person should comment this instead of me doing it (since I have no idea)

setMainCompDefDecompType(int, int, int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Sets the "component main default" decomposition type and number of levels for the specified component.

setMajorIncrement(double) - Method in class loci.poi.hssf.record.ValueRangeRecord

Set the major increment field for the ValueRange record.

setMajorTickType(byte) - Method in class loci.poi.hssf.record.TickRecord

Set the major tick type field for the Tick record.

setMajorUnit(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Set the major unit field for the AxisOptions record.

setMajorUnitValue(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Set the major unit value field for the AxisOptions record.

setManager(String) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the manager.

setManufacturer(String) - Method in class ome.xml.model.ManufacturerSpec

setMap(Map) - Method in class ome.xml.model.GenericExcitationSource

setMap(Map) - Method in class ome.xml.model.ImagingEnvironment

setMapAnnotation(int, MapAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setMapAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMapAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setMapAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setMapAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of MapAnnotation.

setMapAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMapAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setMapAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setMapAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setMapAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of MapAnnotation.

setMapAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMapAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setMapAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setMapAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setMapAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of MapAnnotation.

setMapAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMapAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setMapAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setMapAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setMapAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of MapAnnotation.

setMapAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMapAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setMapAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setMapAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setMapAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of MapAnnotation.

setMapAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMapAnnotationValue(List<MapPair>, int) - Method in class ome.xml.meta.AggregateMetadata

Sets the Map value associated with this annotation

setMapAnnotationValue(List<MapPair>, int) - Method in class ome.xml.meta.DummyMetadata

Sets the Map value associated with this annotation

setMapAnnotationValue(List<MapPair>, int) - Method in class ome.xml.meta.FilterMetadata

Sets the Map value associated with this annotation

setMapAnnotationValue(List<MapPair>, int) - Method in interface ome.xml.meta.MetadataStore

Set the values of a MapAnnotation.

setMapAnnotationValue(List<MapPair>, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Sets the Map value associated with this annotation

setMargin(short, double) - Method in class loci.poi.hssf.model.Sheet

Sets the size of the margin in inches.

setMargin(double) - Method in class loci.poi.hssf.record.BottomMarginRecord

Set the margin field for the BottomMargin record.

setMargin(double) - Method in class loci.poi.hssf.record.LeftMarginRecord

Set the margin field for the LeftMargin record.

setMargin(double) - Method in interface loci.poi.hssf.record.Margin

Set the margin field for the Margin.

setMargin(double) - Method in class loci.poi.hssf.record.RightMarginRecord

Set the margin field for the RightMargin record.

setMargin(double) - Method in class loci.poi.hssf.record.TopMarginRecord

Set the margin field for the TopMargin record.

setMargin(short, double) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets the size of the margin in inches.

setMarginBottom(int) - Method in class loci.poi.hssf.usermodel.HSSFTextbox

Sets the bottom margin within the textbox.

setMarginLeft(int) - Method in class loci.poi.hssf.usermodel.HSSFTextbox

Sets the left margin within the textbox.

setMarginRight(int) - Method in class loci.poi.hssf.usermodel.HSSFTextbox

Sets the right margin within the textbox.

setMarginTop(int) - Method in class loci.poi.hssf.usermodel.HSSFTextbox

Sets the top margin within the textbox.

setMarker(byte) - Method in class loci.poi.ddf.EscherBitmapBlip

setMarkerEnd(Marker) - Method in class ome.xml.model.Line

setMarkerEnd(Marker) - Method in class ome.xml.model.Polyline

setMarkerStart(Marker) - Method in class ome.xml.model.Line

setMarkerStart(Marker) - Method in class ome.xml.model.Polyline

setMask(ImageProcessor) - Method in class loci.plugins.util.RecordedImageProcessor

setMask(Mask) - Method in class ome.xml.model.BinData

setMaskAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Mask.

setMaskAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskBinData(byte[], int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskBinData(byte[], int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskBinData(byte[], int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskBinData(byte[], int, int) - Method in interface ome.xml.meta.MetadataStore

Set the BinData property of Mask.

setMaskBinData(byte[], int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskFillColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskFillColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskFillColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskFillColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillColor property of Mask.

setMaskFillColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskFillRule(FillRule, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskFillRule(FillRule, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskFillRule(FillRule, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskFillRule(FillRule, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillRule property of Mask.

setMaskFillRule(FillRule, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskFontFamily(FontFamily, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontFamily property of Mask.

setMaskFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskFontSize(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskFontSize(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskFontSize(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskFontSize(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontSize property of Mask.

setMaskFontSize(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskFontStyle(FontStyle, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontStyle property of Mask.

setMaskFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskHeight(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskHeight(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskHeight(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskHeight(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Height property of Mask.

setMaskHeight(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Mask.

setMaskID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskLineCap(LineCap, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskLineCap(LineCap, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskLineCap(LineCap, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskLineCap(LineCap, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LineCap property of Mask.

setMaskLineCap(LineCap, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskLocked(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskLocked(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskLocked(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskLocked(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Locked property of Mask.

setMaskLocked(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskStrokeColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskStrokeColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskStrokeColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskStrokeColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeColor property of Mask.

setMaskStrokeColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskStrokeDashArray(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskStrokeDashArray(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskStrokeDashArray(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskStrokeDashArray(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeDashArray property of Mask.

setMaskStrokeDashArray(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskStrokeWidth(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskStrokeWidth(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskStrokeWidth(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskStrokeWidth(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeWidth property of Mask.

setMaskStrokeWidth(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskText(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskText(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskText(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskText(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Text property of Mask.

setMaskText(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskTheC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheC property of Mask.

setMaskTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskTheT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheT property of Mask.

setMaskTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskTheZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheZ property of Mask.

setMaskTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskTransform(AffineTransform, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskTransform(AffineTransform, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskTransform(AffineTransform, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskTransform(AffineTransform, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Transform property of Mask.

setMaskTransform(AffineTransform, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskVisible(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskVisible(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskVisible(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskVisible(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Visible property of Mask.

setMaskVisible(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskWidth(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskWidth(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskWidth(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskWidth(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Width property of Mask.

setMaskWidth(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskX(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskX(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskX(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskX(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the X property of Mask.

setMaskX(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaskY(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMaskY(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setMaskY(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setMaskY(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Y property of Mask.

setMaskY(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMaxBitDepth(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

Set the maximum sample size and maximum sample value.

setMaxChange(double) - Method in class loci.poi.hssf.record.DeltaRecord

set the maximum change

setMaximumAxisValue(double) - Method in class loci.poi.hssf.record.ValueRangeRecord

Set the maximum axis value field for the ValueRange record.

setMaximumCategory(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Set the maximum category field for the AxisOptions record.

setMaximumFieldCount(PositiveInteger) - Method in class ome.xml.model.PlateAcquisition

setMedium(Medium) - Method in class ome.xml.model.ObjectiveSettings

setMergeCells(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether to merge cells

setMetadata(IIOMetadata) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Sets the value of the metadata field.

setMetadata(IIOMetadata) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the metadata field.

setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFEXIFJPEGCompressor

setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Sets the value of the metadata field.

setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor

Sets the value of the metadata field.

setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

Sets the value of the metadata field.

setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setMetadataFile(String) - Method in class ome.xml.model.BinaryOnly

setMetadataFiltered(boolean) - Method in class loci.formats.DelegateReader

setMetadataFiltered(boolean) - Method in class loci.formats.FormatReader

setMetadataFiltered(boolean) - Method in interface loci.formats.IFormatReader

Specifies whether ugly metadata (entries with unprintable characters, and extremely large entries) should be discarded from the metadata table.

setMetadataFiltered(boolean) - Method in class loci.formats.ImageReader

setMetadataFiltered(boolean) - Method in class loci.formats.in.FilePatternReader

setMetadataFiltered(boolean) - Method in class loci.formats.ReaderWrapper

setMetadataFiltered(String) - Method in class loci.plugins.macro.LociFunctions

setMetadataLevel(MetadataLevel) - Method in class loci.formats.in.DefaultMetadataOptions

setMetadataLevel(MetadataLevel) - Method in interface loci.formats.in.MetadataOptions

Set the MetadataLevel associated with this MetadataOptions.

setMetadataOnly(MetadataOnly) - Method in class ome.xml.model.Pixels

setMetadataOptions(MetadataOptions) - Method in class loci.formats.DelegateReader

setMetadataOptions(MetadataOptions) - Method in class loci.formats.FormatReader

setMetadataOptions(MetadataOptions) - Method in class loci.formats.ImageReader

setMetadataOptions(MetadataOptions) - Method in interface loci.formats.IMetadataConfigurable

setMetadataOptions(MetadataOptions) - Method in class loci.formats.ReaderWrapper

setMetadataRetrieve(MetadataRetrieve) - Method in class loci.formats.FormatWriter

setMetadataRetrieve(MetadataRetrieve) - Method in interface loci.formats.IFormatWriter

Sets the metadata retrieval object from which to retrieve standardized metadata.

setMetadataRetrieve(MetadataRetrieve) - Method in class loci.formats.ImageWriter

setMetadataRetrieve(MetadataRetrieve) - Method in class loci.formats.WriterWrapper

setMetadataStore(MetadataStore) - Method in class loci.formats.DelegateReader

setMetadataStore(MetadataStore) - Method in class loci.formats.FileStitcher

setMetadataStore(MetadataStore) - Method in class loci.formats.FormatReader

setMetadataStore(MetadataStore) - Method in interface loci.formats.IFormatReader

Sets the default metadata store for this reader.

setMetadataStore(MetadataStore) - Method in class loci.formats.ImageReader

setMetadataStore(MetadataStore) - Method in class loci.formats.in.FilePatternReader

setMetadataStore(MetadataStore) - Method in class loci.formats.Memoizer

setMetadataStore(MetadataStore) - Method in class loci.formats.ReaderWrapper

setMethodForMQLengthCalc(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets methodForMQLengthCalc

setMethodForMQTermination(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets methodForMQTermination

setMicrobeamManipulation(int, MicrobeamManipulation) - Method in class ome.xml.model.Experiment

setMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.LightSourceSettings

setMicrobeamManipulationDescription(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMicrobeamManipulationDescription(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setMicrobeamManipulationDescription(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setMicrobeamManipulationDescription(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of MicrobeamManipulation.

setMicrobeamManipulationDescription(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicrobeamManipulationExperimenterRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMicrobeamManipulationExperimenterRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setMicrobeamManipulationExperimenterRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setMicrobeamManipulationExperimenterRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimenterRef property of MicrobeamManipulation.

setMicrobeamManipulationExperimenterRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicrobeamManipulationID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMicrobeamManipulationID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setMicrobeamManipulationID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setMicrobeamManipulationID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of MicrobeamManipulation.

setMicrobeamManipulationID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Attenuation property of LightSourceSettings.

setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicrobeamManipulationLightSourceSettingsID(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMicrobeamManipulationLightSourceSettingsID(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setMicrobeamManipulationLightSourceSettingsID(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setMicrobeamManipulationLightSourceSettingsID(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of LightSourceSettings.

setMicrobeamManipulationLightSourceSettingsID(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicrobeamManipulationLightSourceSettingsWavelength(Length, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMicrobeamManipulationLightSourceSettingsWavelength(Length, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setMicrobeamManipulationLightSourceSettingsWavelength(Length, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setMicrobeamManipulationLightSourceSettingsWavelength(Length, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Wavelength property of LightSourceSettings.

setMicrobeamManipulationLightSourceSettingsWavelength(Length, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicrobeamManipulationROIRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMicrobeamManipulationROIRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setMicrobeamManipulationROIRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setMicrobeamManipulationROIRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ROIRef property of MicrobeamManipulation.

setMicrobeamManipulationROIRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicrobeamManipulationType(MicrobeamManipulationType, int, int) - Method in class ome.xml.meta.AggregateMetadata

setMicrobeamManipulationType(MicrobeamManipulationType, int, int) - Method in class ome.xml.meta.DummyMetadata

setMicrobeamManipulationType(MicrobeamManipulationType, int, int) - Method in class ome.xml.meta.FilterMetadata

setMicrobeamManipulationType(MicrobeamManipulationType, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of MicrobeamManipulation.

setMicrobeamManipulationType(MicrobeamManipulationType, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicroscope(Microscope) - Method in class ome.xml.model.Instrument

setMicroscopeLotNumber(String, int) - Method in class ome.xml.meta.AggregateMetadata

setMicroscopeLotNumber(String, int) - Method in class ome.xml.meta.DummyMetadata

setMicroscopeLotNumber(String, int) - Method in class ome.xml.meta.FilterMetadata

setMicroscopeLotNumber(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of Microscope.

setMicroscopeLotNumber(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicroscopeManufacturer(String, int) - Method in class ome.xml.meta.AggregateMetadata

setMicroscopeManufacturer(String, int) - Method in class ome.xml.meta.DummyMetadata

setMicroscopeManufacturer(String, int) - Method in class ome.xml.meta.FilterMetadata

setMicroscopeManufacturer(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of Microscope.

setMicroscopeManufacturer(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicroscopeModel(String, int) - Method in class ome.xml.meta.AggregateMetadata

setMicroscopeModel(String, int) - Method in class ome.xml.meta.DummyMetadata

setMicroscopeModel(String, int) - Method in class ome.xml.meta.FilterMetadata

setMicroscopeModel(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of Microscope.

setMicroscopeModel(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicroscopeSerialNumber(String, int) - Method in class ome.xml.meta.AggregateMetadata

setMicroscopeSerialNumber(String, int) - Method in class ome.xml.meta.DummyMetadata

setMicroscopeSerialNumber(String, int) - Method in class ome.xml.meta.FilterMetadata

setMicroscopeSerialNumber(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of Microscope.

setMicroscopeSerialNumber(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMicroscopeType(MicroscopeType, int) - Method in class ome.xml.meta.AggregateMetadata

setMicroscopeType(MicroscopeType, int) - Method in class ome.xml.meta.DummyMetadata

setMicroscopeType(MicroscopeType, int) - Method in class ome.xml.meta.FilterMetadata

setMicroscopeType(MicroscopeType, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Microscope.

setMicroscopeType(MicroscopeType, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setMiddleName(String) - Method in class ome.xml.model.Experimenter

setMIMEType(String) - Method in class ome.xml.model.BinaryFile

setMinAndMax(double, double) - Method in class loci.plugins.util.RecordedImageProcessor

setMinimumAxisValue(double) - Method in class loci.poi.hssf.record.ValueRangeRecord

Set the minimum axis value field for the ValueRange record.

setMinimumCategory(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Set the minimum category field for the AxisOptions record.

setMinMaxStore(IMinMaxStore) - Method in class loci.formats.MinMaxCalculator

Sets the active min-max store for the calculator.

setMinorIncrement(double) - Method in class loci.poi.hssf.record.ValueRangeRecord

Set the minor increment field for the ValueRange record.

setMinorTickType(byte) - Method in class loci.poi.hssf.record.TickRecord

Set the minor tick type field for the Tick record.

setMinorUnit(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Set the minor unit field for the AxisOptions record.

setMinorUnitValue(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Set the minor unit value field for the AxisOptions record.

setMinX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets minX

setMinY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets minY

setMMClipCount(int) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the mmclip count.

setMode(short) - Method in class loci.poi.hssf.record.RefModeRecord

set the reference mode to use (HSSF uses/assumes A1)

setModel(String) - Method in class ome.xml.model.ManufacturerSpec

setModulo(OMEXMLMetadata, Modulo) - Method in class loci.formats.meta.ModuloAnnotation

Set the value of this annotation using the given Modulo object

setMustGroup(boolean) - Method in class loci.plugins.in.ImporterOptions

setName(byte) - Method in class loci.poi.ddf.EscherBSERecord

The length in characters of the blip name.

setName(String) - Method in class loci.poi.hpsf.CustomProperty

Sets the property's name.

setName(String) - Method in class loci.poi.hssf.record.StyleRecord

set the style's name

setName(String) - Method in class loci.poi.poifs.property.Property

Set the name; silently truncates the name if it's too long.

setName(String) - Method in class ome.xml.model.Channel

setName(String) - Method in class ome.xml.model.Dataset

setName(String) - Method in class ome.xml.model.ExperimenterGroup

setName(String) - Method in class ome.xml.model.Image

setName(String) - Method in class ome.xml.model.Plate

setName(String) - Method in class ome.xml.model.PlateAcquisition

setName(String) - Method in class ome.xml.model.Project

setName(String) - Method in class ome.xml.model.Reagent

setName(String) - Method in class ome.xml.model.ROI

setName(String) - Method in class ome.xml.model.Screen

setName(String) - Method in class ome.xml.model.StageLabel

setNameDefinition(Stack) - Method in class loci.poi.hssf.record.NameRecord

setNameLength(byte) - Method in class loci.poi.hssf.record.StyleRecord

if this is a user defined record set the length of the style name

setNameName(String) - Method in class loci.poi.hssf.usermodel.HSSFName

sets the name of the named range

setNamepos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

Sets the namepos.

setNamespace(String) - Method in class ome.xml.model.Annotation

setNamespace(String) - Method in class ome.xml.model.ROI

setNameText(String) - Method in class loci.poi.hssf.record.NameRecord

sets the name of the named range

setNameTextLength(byte) - Method in class loci.poi.hssf.record.NameRecord

sets the name of the named range length

setNDFilter(Double) - Method in class ome.xml.model.Channel

setNextChild(Child) - Method in interface loci.poi.poifs.property.Child

Set the next Child

setNextChild(Child) - Method in interface loci.poi.poifs.property.Parent

Set the next Child

setNextChild(Child) - Method in class loci.poi.poifs.property.Property

Set the next Child

setNoColor(boolean) - Method in class loci.poi.hssf.record.PrintSetupRecord

setNoColor(boolean) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set whether it is black and white

setNodeColor(byte) - Method in class loci.poi.poifs.property.Property

Set the node color.

setNoFill(boolean) - Method in class loci.poi.hssf.usermodel.HSSFShape

Sets whether this shape is filled or transparent.

setNominalMagnification(Double) - Method in class ome.xml.model.Objective

setNoOrientation(boolean) - Method in class loci.poi.hssf.record.PrintSetupRecord

setNoOrientation(boolean) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set no orientation.

setNormalized(boolean) - Method in class loci.formats.DelegateReader

setNormalized(boolean) - Method in class loci.formats.FileStitcher

setNormalized(boolean) - Method in class loci.formats.FormatReader

setNormalized(boolean) - Method in interface loci.formats.IFormatReader

Specifies whether or not to normalize float data.

setNormalized(boolean) - Method in class loci.formats.ImageReader

setNormalized(boolean) - Method in class loci.formats.in.FilePatternReader

setNormalized(boolean) - Method in class loci.formats.ReaderWrapper

setNormalized(Boolean) - Method in class loci.plugins.macro.LociFunctions

setNormalZoom(short) - Method in class loci.poi.hssf.record.WindowTwoRecord

set the zoom magnification in normal view

setNoROIDescaling(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Sets noROIDescaling

setNoteCount(int) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the note count.

setNotes(boolean) - Method in class loci.poi.hssf.record.PrintSetupRecord

setNotes(boolean) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Print the include notes

setNumAreas(short) - Method in class loci.poi.hssf.record.MergeCellsRecord

Deprecated.

We now link the size to the actual array of merged regions

setNumAxis(short) - Method in class loci.poi.hssf.record.AxisUsedRecord

Set the num axis field for the AxisUsed record.

setNumberOfElementsInArray(int) - Method in class loci.poi.ddf.EscherArrayProperty

setNumberOfElementsInMemory(int) - Method in class loci.poi.ddf.EscherArrayProperty

setNumberOfSheets(short) - Method in class loci.poi.hssf.record.SupBookRecord

setNumBreaks(short) - Method in class loci.poi.hssf.record.PageBreakRecord

setNumBubbleValues(short) - Method in class loci.poi.hssf.record.SeriesRecord

Set the num bubble values field for the Series record.

setNumCategories(short) - Method in class loci.poi.hssf.record.SeriesRecord

Set the num categories field for the Series record.

setNumDecompositionLevels(int) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets numDecompositionLevels.

setNumerator(short) - Method in class loci.poi.hssf.record.SCLRecord

Set the numerator field for the SCL record.

setNumOfREFStructures(short) - Method in class loci.poi.hssf.record.ExternSheetRecord

sets the number of the REF structors , that is in Excel file

setNumRefs(short) - Method in class loci.poi.hssf.record.SelectionRecord

set the number of cell refs (we don't support selection so set to 0

setNumSelectedTabs(short) - Method in class loci.poi.hssf.record.WindowOneRecord

set the number of selected tabs

setNumShapes(int) - Method in class loci.poi.ddf.EscherDgRecord

The number of shapes in this drawing group.

setNumShapesSaved(int) - Method in class loci.poi.ddf.EscherDggRecord

setNumStrings(int) - Method in class loci.poi.hssf.record.SSTRecord

USE THIS METHOD AT YOUR OWN PERIL: THE addString METHODS MANIPULATE THE NUMBER OF STRINGS AS A SIDE EFFECT; YOUR ATTEMPTS AT MANIPULATING THE STRING COUNT IS LIKELY TO BE VERY WRONG AND WILL RESULT IN BAD BEHAVIOR WHEN THIS RECORD IS WRITTEN OUT AND ANOTHER PROCESS ATTEMPTS TO READ THE RECORD

setNumStringsPerBucket(short) - Method in class loci.poi.hssf.record.ExtSSTRecord

setNumUniqueStrings(int) - Method in class loci.poi.hssf.record.SSTRecord

USE THIS METHOD AT YOUR OWN PERIL: THE addString METHODS MANIPULATE THE NUMBER OF UNIQUE STRINGS AS A SIDE EFFECT; YOUR ATTEMPTS AT MANIPULATING THE UNIQUE STRING COUNT IS LIKELY TO BE VERY WRONG AND WILL RESULT IN BAD BEHAVIOR WHEN THIS RECORD IS WRITTEN OUT AND ANOTHER PROCESS ATTEMPTS TO READ THE RECORD

setNumValues(short) - Method in class loci.poi.hssf.record.SeriesRecord

Set the num values field for the Series record.

setObjectId(short) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Set the object id field for the CommonObjectData record.

setObjective(int, Objective) - Method in class ome.xml.model.Instrument

setObjective(Objective) - Method in class ome.xml.model.ObjectiveSettings

setObjectiveAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Objective.

setObjectiveAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveCalibratedMagnification(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveCalibratedMagnification(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveCalibratedMagnification(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveCalibratedMagnification(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the CalibratedMagnification property of Objective.

setObjectiveCalibratedMagnification(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveCorrection(Correction, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveCorrection(Correction, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveCorrection(Correction, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveCorrection(Correction, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Correction property of Objective.

setObjectiveCorrection(Correction, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Objective.

setObjectiveID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveImmersion(Immersion, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveImmersion(Immersion, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveImmersion(Immersion, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveImmersion(Immersion, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Immersion property of Objective.

setObjectiveImmersion(Immersion, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveIris(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveIris(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveIris(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveIris(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Iris property of Objective.

setObjectiveIris(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveLensNA(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveLensNA(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveLensNA(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveLensNA(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LensNA property of Objective.

setObjectiveLensNA(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveLotNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveLotNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveLotNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveLotNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LotNumber property of Objective.

setObjectiveLotNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveManufacturer(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveManufacturer(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveManufacturer(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveManufacturer(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Manufacturer property of Objective.

setObjectiveManufacturer(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveModel(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveModel(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveModel(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveModel(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Model property of Objective.

setObjectiveModel(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveNominalMagnification(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveNominalMagnification(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveNominalMagnification(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveNominalMagnification(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the NominalMagnification property of Objective.

setObjectiveNominalMagnification(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveSerialNumber(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveSerialNumber(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveSerialNumber(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveSerialNumber(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the SerialNumber property of Objective.

setObjectiveSerialNumber(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveSettings(ObjectiveSettings) - Method in class ome.xml.model.Image

setObjectiveSettingsCorrectionCollar(Double, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveSettingsCorrectionCollar(Double, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveSettingsCorrectionCollar(Double, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveSettingsCorrectionCollar(Double, int) - Method in interface ome.xml.meta.MetadataStore

Set the CorrectionCollar property of ObjectiveSettings.

setObjectiveSettingsCorrectionCollar(Double, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveSettingsID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveSettingsID(String, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveSettingsID(String, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveSettingsID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of ObjectiveSettings.

setObjectiveSettingsID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveSettingsMedium(Medium, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveSettingsMedium(Medium, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveSettingsMedium(Medium, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveSettingsMedium(Medium, int) - Method in interface ome.xml.meta.MetadataStore

Set the Medium property of ObjectiveSettings.

setObjectiveSettingsMedium(Medium, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveSettingsRefractiveIndex(Double, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveSettingsRefractiveIndex(Double, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveSettingsRefractiveIndex(Double, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveSettingsRefractiveIndex(Double, int) - Method in interface ome.xml.meta.MetadataStore

Set the RefractiveIndex property of ObjectiveSettings.

setObjectiveSettingsRefractiveIndex(Double, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectiveWorkingDistance(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setObjectiveWorkingDistance(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setObjectiveWorkingDistance(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setObjectiveWorkingDistance(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the WorkingDistance property of Objective.

setObjectiveWorkingDistance(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setObjectType(short) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Set the object type field for the CommonObjectData record.

setOffset(long) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the offset field.

setOffset(long) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setOffset(int) - Method in class loci.poi.ddf.EscherBSERecord

File offset in the delay stream.

setOffset(Double) - Method in class ome.xml.model.Detector

setOffset(Double) - Method in class ome.xml.model.DetectorSettings

setOffsetInfo(int, int, int, int) - Method in class loci.formats.in.DeltavisionReader

This method calculates the size of a w, t, z section depending on which sequence is being used (either ZTW, WZT, or ZWT)

setOpenAllSeries(boolean) - Method in class loci.plugins.in.ImporterOptions

setOperator(int) - Method in class mdbtools.dbengine.sql.Condition

setOperator(int) - Method in class mdbtools.dbengine.sql.Equation

setOptimize(short) - Method in class loci.poi.hssf.record.RowRecord

set whether to optimize or not (set to 0)

setOptimizedIf(boolean) - Method in class loci.poi.hssf.record.formula.AttrPtg

setOption(short) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Set the option field for the CommonObjectData record.

setOptionFlag(short) - Method in class loci.poi.hssf.record.NameRecord

sets the option flag for the named range

setOptionFlags(short) - Method in class loci.poi.hssf.record.BoundSheetRecord

set the option flags (unimportant for HSSF supported sheets)

setOptionFlags(short) - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

set the (currently unimportant to HSSF) option flags

setOptionFlags(short) - Method in class loci.poi.hssf.record.RowRecord

sets the option bitmask.

setOptionFlags(byte) - Method in class loci.poi.hssf.record.UnicodeString

set the option flags which among other things return if this is a 16-bit or 8 bit string

setOptions(short) - Method in class loci.poi.ddf.EscherRecord

Set the options this this record.

setOptions(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Set the options field for the AxisOptions record.

setOptions(short) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Set the options field for the CategorySeriesAxis record.

setOptions(short) - Method in class loci.poi.hssf.record.ColumnInfoRecord

set the options bitfield - use the bitsetters instead

setOptions(short) - Method in class loci.poi.hssf.record.DatRecord

Set the options field for the Dat record.

setOptions(byte) - Method in class loci.poi.hssf.record.formula.AttrPtg

setOptions(short) - Method in class loci.poi.hssf.record.FormulaRecord

set the option flags

setOptions(short) - Method in class loci.poi.hssf.record.FrameRecord

Set the options field for the Frame record.

setOptions(short) - Method in class loci.poi.hssf.record.LegendRecord

Set the options field for the Legend record.

setOptions(short) - Method in class loci.poi.hssf.record.LinkedDataRecord

Set the options field for the LinkedData record.

setOptions(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

setOptions(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Set the options field for the TextObjectBase record.

setOptions(short) - Method in class loci.poi.hssf.record.TickRecord

Set the options field for the Tick record.

setOptions(short) - Method in class loci.poi.hssf.record.ValueRangeRecord

Set the options field for the ValueRange record.

setOptions(short) - Method in class loci.poi.hssf.record.WindowOneRecord

set the options bitmask (see bit setters)

setOptions(short) - Method in class loci.poi.hssf.record.WindowTwoRecord

set the options bitmask or just use the bit setters.

setOptions(short) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Sets the options flags.

setOptions1(short) - Method in class loci.poi.hssf.record.TextRecord

Set the options1 field for the Text record.

setOptions2(short) - Method in class loci.poi.hssf.record.TextRecord

Set the options2 field for the Text record.

setOrder(ByteOrder) - Method in class loci.common.ByteArrayHandle

setOrder(ByteOrder) - Method in class loci.common.FileHandle

setOrder(ByteOrder) - Method in interface loci.common.IRandomAccess

Sets the byte order of the stream.

setOrder(ByteOrder) - Method in class loci.common.NIOFileHandle

setOrder(ByteOrder) - Method in class loci.common.StreamHandle

setOrder(int, int) - Method in class loci.formats.cache.CacheStrategy

setOrder(int, int) - Method in interface loci.formats.cache.ICacheStrategy

Sets the order in which objects should be loaded along each axis.

setOriginalMetadataPopulated(boolean) - Method in class loci.formats.DelegateReader

setOriginalMetadataPopulated(boolean) - Method in class loci.formats.FileStitcher

setOriginalMetadataPopulated(boolean) - Method in class loci.formats.FormatReader

setOriginalMetadataPopulated(boolean) - Method in interface loci.formats.IFormatReader

Specifies whether or not to save proprietary metadata in the MetadataStore.

setOriginalMetadataPopulated(boolean) - Method in class loci.formats.ImageReader

setOriginalMetadataPopulated(boolean) - Method in class loci.formats.in.FilePatternReader

setOriginalMetadataPopulated(boolean) - Method in class loci.formats.ReaderWrapper

setOriginalMetadataPopulated(Boolean) - Method in class loci.plugins.macro.LociFunctions

setOSVersion(int) - Method in class loci.poi.hpsf.MutablePropertySet

Sets the "osVersion" property.

setOSVersion(int) - Method in class loci.poi.hpsf.SpecialPropertySet

setOutlineLevel(short) - Method in class loci.poi.hssf.record.ColumnInfoRecord

set the outline level for the cells

setOutlineLevel(short) - Method in class loci.poi.hssf.record.RowRecord

set the outline level of this row

setOutlineStyleLevel(byte) - Method in class loci.poi.hssf.record.StyleRecord

set the row or column level of the style (if builtin 1||2)

setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

setOutputOrder(String) - Method in class loci.formats.DimensionSwapper

Sets the output dimension order according to the given string (e.g., "XYZCT").

setOutputOrder(String) - Method in class loci.formats.out.ICSWriter

Set the order in which dimensions should be written to the file.

setOutputOrder(String) - Method in class loci.formats.out.V3DrawWriter

Set the order in which dimensions should be written to the file.

setOutputOrder(String) - Method in class loci.formats.out.WlzWriter

Set the order in which dimensions should be written to the file.

setPackedBinaryData(byte[], WritableRaster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Sets the supplied Raster's data from an array of packed binary data of the form returned by getPackedBinaryData().

setPacketPerTilePart(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets packetPerTilePart

setPackPacketHeaderInMain(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets packPacketHeaderInMain

setPackPacketHeaderInTile(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets packPacketHeaderInTile

setPageBreakZoom(short) - Method in class loci.poi.hssf.record.WindowTwoRecord

zoom magification in page break view

setPageCount(int) - Method in class loci.poi.hpsf.SummaryInformation

Sets the page count.

setPaged(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

is the sheet currently displayed in the window

setPageStart(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

setPageStart(short) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set the page numbering start.

setPaint(Paint) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setPaint(Paint) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setPaintMode() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setPaintMode() - Method in class loci.poi.hssf.usermodel.EscherGraphics

setPaintMode() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setPaletteOptions(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the palette options bitmask (see the individual bitsetter methods that reference this one)

setPalettepos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

setPane(byte) - Method in class loci.poi.hssf.record.SelectionRecord

set which window pane this is for

setPaperSize(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

setPaperSize(short) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set the paper size.

setParameterRVA(Node, int) - Method in class loci.poi.hssf.model.FormulaParser

setParameterRVA(Node, int, int) - Method in class loci.poi.hssf.model.FormulaParser

setParCount(int) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the par count.

setParent(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree.Node

Set this node's parent node

setParentIndex(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

for cell XF types this is the parent style (usually 0/normal).

setParsedExpression(Stack) - Method in class loci.poi.hssf.record.FormulaRecord

setParsingEnabled(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Sets parsingEnabled

setPassword(short) - Method in class loci.poi.hssf.record.FileSharingRecord

setPassword(short) - Method in class loci.poi.hssf.record.PasswordRecord

set the password

setPassword(short) - Method in class loci.poi.hssf.record.PasswordRev4Record

set the password

setPatriarch(HSSFPatriarch) - Method in class loci.poi.hssf.record.EscherAggregate

setPattern(short) - Method in class loci.poi.hssf.record.AreaFormatRecord

Set the pattern field for the AreaFormat record.

setPhotometricInterpretation(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the photometricInterpretation field.

setPhotometricInterpretation(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setPhysicalSizeX(Length) - Method in class ome.xml.model.Pixels

setPhysicalSizeY(Length) - Method in class ome.xml.model.Pixels

setPhysicalSizeZ(Length) - Method in class ome.xml.model.Pixels

setPictureData(byte[]) - Method in class loci.poi.ddf.EscherBlipRecord

setPictureIndex(int) - Method in class loci.poi.hssf.usermodel.HSSFPicture

setPinholeSize(Length) - Method in class ome.xml.model.Channel

setPixels(int, int, int, int, ColorModel, byte[], int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

setPixels(int, int, int, int, ColorModel, int[], int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

setPixels() - Method in class loci.formats.in.GIFReader

setPixels(int, FloatProcessor) - Method in class loci.plugins.util.RecordedImageProcessor

setPixels(Object) - Method in class loci.plugins.util.RecordedImageProcessor

setPixels(Pixels) - Method in class ome.xml.model.BinData

setPixels(Pixels) - Method in class ome.xml.model.Channel

setPixels(Pixels) - Method in class ome.xml.model.Image

setPixels(Pixels) - Method in class ome.xml.model.Plane

setPixels(Pixels) - Method in class ome.xml.model.TiffData

setPixelsBigEndian(Boolean, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsBigEndian(Boolean, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsBigEndian(Boolean, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsBigEndian(Boolean, int) - Method in interface ome.xml.meta.MetadataStore

Set the BigEndian property of Pixels.

setPixelsBigEndian(Boolean, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsBinDataBigEndian(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsBinDataBigEndian(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsBinDataBigEndian(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsBinDataBigEndian(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the BigEndian property of Pixels.

setPixelsBinDataBigEndian(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsDimensionOrder(DimensionOrder, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsDimensionOrder(DimensionOrder, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsDimensionOrder(DimensionOrder, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsDimensionOrder(DimensionOrder, int) - Method in interface ome.xml.meta.MetadataStore

Set the DimensionOrder property of Pixels.

setPixelsDimensionOrder(DimensionOrder, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsID(String, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsID(String, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Pixels.

setPixelsID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsInterleaved(Boolean, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsInterleaved(Boolean, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsInterleaved(Boolean, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsInterleaved(Boolean, int) - Method in interface ome.xml.meta.MetadataStore

Set the Interleaved property of Pixels.

setPixelsInterleaved(Boolean, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsPhysicalSizeX(Length, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsPhysicalSizeX(Length, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsPhysicalSizeX(Length, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsPhysicalSizeX(Length, int) - Method in interface ome.xml.meta.MetadataStore

Set the PhysicalSizeX property of Pixels.

setPixelsPhysicalSizeX(Length, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsPhysicalSizeY(Length, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsPhysicalSizeY(Length, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsPhysicalSizeY(Length, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsPhysicalSizeY(Length, int) - Method in interface ome.xml.meta.MetadataStore

Set the PhysicalSizeY property of Pixels.

setPixelsPhysicalSizeY(Length, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsPhysicalSizeZ(Length, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsPhysicalSizeZ(Length, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsPhysicalSizeZ(Length, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsPhysicalSizeZ(Length, int) - Method in interface ome.xml.meta.MetadataStore

Set the PhysicalSizeZ property of Pixels.

setPixelsPhysicalSizeZ(Length, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsSignificantBits(PositiveInteger, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsSignificantBits(PositiveInteger, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsSignificantBits(PositiveInteger, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsSignificantBits(PositiveInteger, int) - Method in interface ome.xml.meta.MetadataStore

Set the SignificantBits property of Pixels.

setPixelsSignificantBits(PositiveInteger, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsSizeC(PositiveInteger, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsSizeC(PositiveInteger, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsSizeC(PositiveInteger, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsSizeC(PositiveInteger, int) - Method in interface ome.xml.meta.MetadataStore

Set the SizeC property of Pixels.

setPixelsSizeC(PositiveInteger, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsSizeT(PositiveInteger, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsSizeT(PositiveInteger, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsSizeT(PositiveInteger, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsSizeT(PositiveInteger, int) - Method in interface ome.xml.meta.MetadataStore

Set the SizeT property of Pixels.

setPixelsSizeT(PositiveInteger, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsSizeX(PositiveInteger, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsSizeX(PositiveInteger, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsSizeX(PositiveInteger, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsSizeX(PositiveInteger, int) - Method in interface ome.xml.meta.MetadataStore

Set the SizeX property of Pixels.

setPixelsSizeX(PositiveInteger, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsSizeY(PositiveInteger, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsSizeY(PositiveInteger, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsSizeY(PositiveInteger, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsSizeY(PositiveInteger, int) - Method in interface ome.xml.meta.MetadataStore

Set the SizeY property of Pixels.

setPixelsSizeY(PositiveInteger, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsSizeZ(PositiveInteger, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsSizeZ(PositiveInteger, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsSizeZ(PositiveInteger, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsSizeZ(PositiveInteger, int) - Method in interface ome.xml.meta.MetadataStore

Set the SizeZ property of Pixels.

setPixelsSizeZ(PositiveInteger, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsTimeIncrement(Time, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsTimeIncrement(Time, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsTimeIncrement(Time, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsTimeIncrement(Time, int) - Method in interface ome.xml.meta.MetadataStore

Set the TimeIncrement property of Pixels.

setPixelsTimeIncrement(Time, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPixelsType(PixelType, int) - Method in class ome.xml.meta.AggregateMetadata

setPixelsType(PixelType, int) - Method in class ome.xml.meta.DummyMetadata

setPixelsType(PixelType, int) - Method in class ome.xml.meta.FilterMetadata

setPixelsType(PixelType, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Pixels.

setPixelsType(PixelType, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlanar(boolean) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the planar field.

setPlanar(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setPlane(int, Plane) - Method in class ome.xml.model.Pixels

setPlaneAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlaneAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlaneAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlaneAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Plane.

setPlaneAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlaneCount(NonNegativeInteger) - Method in class ome.xml.model.TiffData

setPlaneDeltaT(Time, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlaneDeltaT(Time, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlaneDeltaT(Time, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlaneDeltaT(Time, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the DeltaT property of Plane.

setPlaneDeltaT(Time, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlaneExposureTime(Time, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlaneExposureTime(Time, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlaneExposureTime(Time, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlaneExposureTime(Time, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExposureTime property of Plane.

setPlaneExposureTime(Time, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlaneHashSHA1(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlaneHashSHA1(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlaneHashSHA1(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlaneHashSHA1(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the HashSHA1 property of Plane.

setPlaneHashSHA1(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlaneIndexes(int[]) - Method in class loci.plugins.util.BFVirtualStack

setPlanePositionX(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlanePositionX(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlanePositionX(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlanePositionX(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PositionX property of Plane.

setPlanePositionX(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlanePositionY(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlanePositionY(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlanePositionY(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlanePositionY(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PositionY property of Plane.

setPlanePositionY(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlanePositionZ(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlanePositionZ(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlanePositionZ(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlanePositionZ(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PositionZ property of Plane.

setPlanePositionZ(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlaneTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlaneTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlaneTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlaneTheC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheC property of Plane.

setPlaneTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlaneTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlaneTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlaneTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlaneTheT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheT property of Plane.

setPlaneTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlaneTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlaneTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlaneTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlaneTheZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheZ property of Plane.

setPlaneTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlate(int, Plate) - Method in class ome.xml.model.OME

setPlate(Plate) - Method in class ome.xml.model.PlateAcquisition

setPlate(Plate) - Method in class ome.xml.model.Well

setPlateAcquisition(int, PlateAcquisition) - Method in class ome.xml.model.Plate

setPlateAcquisitionAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateAcquisitionAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlateAcquisitionAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlateAcquisitionAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of PlateAcquisition.

setPlateAcquisitionAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateAcquisitionDescription(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateAcquisitionDescription(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlateAcquisitionDescription(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlateAcquisitionDescription(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of PlateAcquisition.

setPlateAcquisitionDescription(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateAcquisitionEndTime(Timestamp, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateAcquisitionEndTime(Timestamp, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlateAcquisitionEndTime(Timestamp, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlateAcquisitionEndTime(Timestamp, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the EndTime property of PlateAcquisition.

setPlateAcquisitionEndTime(Timestamp, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateAcquisitionID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateAcquisitionID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlateAcquisitionID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlateAcquisitionID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of PlateAcquisition.

setPlateAcquisitionID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateAcquisitionMaximumFieldCount(PositiveInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateAcquisitionMaximumFieldCount(PositiveInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlateAcquisitionMaximumFieldCount(PositiveInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlateAcquisitionMaximumFieldCount(PositiveInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the MaximumFieldCount property of PlateAcquisition.

setPlateAcquisitionMaximumFieldCount(PositiveInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateAcquisitionName(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateAcquisitionName(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlateAcquisitionName(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlateAcquisitionName(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of PlateAcquisition.

setPlateAcquisitionName(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateAcquisitionStartTime(Timestamp, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateAcquisitionStartTime(Timestamp, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlateAcquisitionStartTime(Timestamp, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlateAcquisitionStartTime(Timestamp, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StartTime property of PlateAcquisition.

setPlateAcquisitionStartTime(Timestamp, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateAcquisitionWellSampleRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateAcquisitionWellSampleRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlateAcquisitionWellSampleRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlateAcquisitionWellSampleRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the WellSampleRef property of PlateAcquisition.

setPlateAcquisitionWellSampleRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPlateAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPlateAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Plate.

setPlateAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateColumnNamingConvention(NamingConvention, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateColumnNamingConvention(NamingConvention, int) - Method in class ome.xml.meta.DummyMetadata

setPlateColumnNamingConvention(NamingConvention, int) - Method in class ome.xml.meta.FilterMetadata

setPlateColumnNamingConvention(NamingConvention, int) - Method in interface ome.xml.meta.MetadataStore

Set the ColumnNamingConvention property of Plate.

setPlateColumnNamingConvention(NamingConvention, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateColumns(PositiveInteger, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateColumns(PositiveInteger, int) - Method in class ome.xml.meta.DummyMetadata

setPlateColumns(PositiveInteger, int) - Method in class ome.xml.meta.FilterMetadata

setPlateColumns(PositiveInteger, int) - Method in interface ome.xml.meta.MetadataStore

Set the Columns property of Plate.

setPlateColumns(PositiveInteger, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setPlateDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setPlateDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of Plate.

setPlateDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateExternalIdentifier(String, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateExternalIdentifier(String, int) - Method in class ome.xml.meta.DummyMetadata

setPlateExternalIdentifier(String, int) - Method in class ome.xml.meta.FilterMetadata

setPlateExternalIdentifier(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExternalIdentifier property of Plate.

setPlateExternalIdentifier(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateFieldIndex(NonNegativeInteger, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateFieldIndex(NonNegativeInteger, int) - Method in class ome.xml.meta.DummyMetadata

setPlateFieldIndex(NonNegativeInteger, int) - Method in class ome.xml.meta.FilterMetadata

setPlateFieldIndex(NonNegativeInteger, int) - Method in interface ome.xml.meta.MetadataStore

Set the FieldIndex property of Plate.

setPlateFieldIndex(NonNegativeInteger, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateID(String, int) - Method in class ome.xml.meta.DummyMetadata

setPlateID(String, int) - Method in class ome.xml.meta.FilterMetadata

setPlateID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Plate.

setPlateID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateName(String, int) - Method in class ome.xml.meta.DummyMetadata

setPlateName(String, int) - Method in class ome.xml.meta.FilterMetadata

setPlateName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of Plate.

setPlateName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateRowNamingConvention(NamingConvention, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateRowNamingConvention(NamingConvention, int) - Method in class ome.xml.meta.DummyMetadata

setPlateRowNamingConvention(NamingConvention, int) - Method in class ome.xml.meta.FilterMetadata

setPlateRowNamingConvention(NamingConvention, int) - Method in interface ome.xml.meta.MetadataStore

Set the RowNamingConvention property of Plate.

setPlateRowNamingConvention(NamingConvention, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateRows(PositiveInteger, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateRows(PositiveInteger, int) - Method in class ome.xml.meta.DummyMetadata

setPlateRows(PositiveInteger, int) - Method in class ome.xml.meta.FilterMetadata

setPlateRows(PositiveInteger, int) - Method in interface ome.xml.meta.MetadataStore

Set the Rows property of Plate.

setPlateRows(PositiveInteger, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateStatus(String, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateStatus(String, int) - Method in class ome.xml.meta.DummyMetadata

setPlateStatus(String, int) - Method in class ome.xml.meta.FilterMetadata

setPlateStatus(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Status property of Plate.

setPlateStatus(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateWellOriginX(Length, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateWellOriginX(Length, int) - Method in class ome.xml.meta.DummyMetadata

setPlateWellOriginX(Length, int) - Method in class ome.xml.meta.FilterMetadata

setPlateWellOriginX(Length, int) - Method in interface ome.xml.meta.MetadataStore

Set the WellOriginX property of Plate.

setPlateWellOriginX(Length, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlateWellOriginY(Length, int) - Method in class ome.xml.meta.AggregateMetadata

setPlateWellOriginY(Length, int) - Method in class ome.xml.meta.DummyMetadata

setPlateWellOriginY(Length, int) - Method in class ome.xml.meta.FilterMetadata

setPlateWellOriginY(Length, int) - Method in interface ome.xml.meta.MetadataStore

Set the WellOriginY property of Plate.

setPlateWellOriginY(Length, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPlotVisibleOnly(boolean) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Sets the plot visible only field value.

setPockelCell(Boolean) - Method in class ome.xml.model.Laser

setPockelCellSetting(Integer) - Method in class ome.xml.model.Channel

setPointAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Point.

setPointAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointFillColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointFillColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointFillColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointFillColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillColor property of Point.

setPointFillColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointFillRule(FillRule, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointFillRule(FillRule, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointFillRule(FillRule, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointFillRule(FillRule, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillRule property of Point.

setPointFillRule(FillRule, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointFontFamily(FontFamily, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontFamily property of Point.

setPointFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointFontSize(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointFontSize(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointFontSize(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointFontSize(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontSize property of Point.

setPointFontSize(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointFontStyle(FontStyle, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontStyle property of Point.

setPointFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Point.

setPointID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointLineCap(LineCap, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointLineCap(LineCap, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointLineCap(LineCap, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointLineCap(LineCap, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LineCap property of Point.

setPointLineCap(LineCap, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointLocked(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointLocked(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointLocked(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointLocked(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Locked property of Point.

setPointLocked(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointNumber(short) - Method in class loci.poi.hssf.record.DataFormatRecord

Set the point number field for the DataFormat record.

setPoints(int[], int[]) - Method in class loci.poi.hssf.usermodel.HSSFPolygon

setPoints(String) - Method in class ome.xml.model.Polygon

setPoints(String) - Method in class ome.xml.model.Polyline

setPointStrokeColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointStrokeColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointStrokeColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointStrokeColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeColor property of Point.

setPointStrokeColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointStrokeDashArray(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointStrokeDashArray(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointStrokeDashArray(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointStrokeDashArray(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeDashArray property of Point.

setPointStrokeDashArray(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointStrokeWidth(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointStrokeWidth(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointStrokeWidth(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointStrokeWidth(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeWidth property of Point.

setPointStrokeWidth(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointText(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointText(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointText(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointText(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Text property of Point.

setPointText(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointTheC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheC property of Point.

setPointTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointTheT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheT property of Point.

setPointTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointTheZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheZ property of Point.

setPointTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointTransform(AffineTransform, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointTransform(AffineTransform, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointTransform(AffineTransform, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointTransform(AffineTransform, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Transform property of Point.

setPointTransform(AffineTransform, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointVisible(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointVisible(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointVisible(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointVisible(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Visible property of Point.

setPointVisible(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointX(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointX(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointX(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointX(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the X property of Point.

setPointX(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPointY(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPointY(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setPointY(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setPointY(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Y property of Point.

setPointY(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Polygon.

setPolygonAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonDrawArea(int, int) - Method in class loci.poi.hssf.usermodel.HSSFPolygon

Defines the width and height of the points in the polygon

setPolygonFillColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonFillColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonFillColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonFillColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillColor property of Polygon.

setPolygonFillColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonFillRule(FillRule, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonFillRule(FillRule, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonFillRule(FillRule, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonFillRule(FillRule, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillRule property of Polygon.

setPolygonFillRule(FillRule, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonFontFamily(FontFamily, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontFamily property of Polygon.

setPolygonFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonFontSize(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonFontSize(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonFontSize(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonFontSize(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontSize property of Polygon.

setPolygonFontSize(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonFontStyle(FontStyle, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontStyle property of Polygon.

setPolygonFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Polygon.

setPolygonID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonLineCap(LineCap, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonLineCap(LineCap, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonLineCap(LineCap, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonLineCap(LineCap, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LineCap property of Polygon.

setPolygonLineCap(LineCap, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonLocked(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonLocked(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonLocked(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonLocked(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Locked property of Polygon.

setPolygonLocked(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonPoints(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonPoints(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonPoints(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonPoints(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Points property of Polygon.

setPolygonPoints(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonStrokeColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonStrokeColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonStrokeColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonStrokeColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeColor property of Polygon.

setPolygonStrokeColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonStrokeDashArray(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonStrokeDashArray(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonStrokeDashArray(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonStrokeDashArray(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeDashArray property of Polygon.

setPolygonStrokeDashArray(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonStrokeWidth(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonStrokeWidth(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonStrokeWidth(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonStrokeWidth(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeWidth property of Polygon.

setPolygonStrokeWidth(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonText(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonText(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonText(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonText(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Text property of Polygon.

setPolygonText(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonTheC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheC property of Polygon.

setPolygonTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonTheT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheT property of Polygon.

setPolygonTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonTheZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheZ property of Polygon.

setPolygonTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonTransform(AffineTransform, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonTransform(AffineTransform, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonTransform(AffineTransform, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonTransform(AffineTransform, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Transform property of Polygon.

setPolygonTransform(AffineTransform, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolygonVisible(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolygonVisible(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolygonVisible(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolygonVisible(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Visible property of Polygon.

setPolygonVisible(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Polyline.

setPolylineAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineFillColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineFillColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineFillColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineFillColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillColor property of Polyline.

setPolylineFillColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineFillRule(FillRule, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineFillRule(FillRule, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineFillRule(FillRule, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineFillRule(FillRule, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillRule property of Polyline.

setPolylineFillRule(FillRule, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineFontFamily(FontFamily, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontFamily property of Polyline.

setPolylineFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineFontSize(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineFontSize(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineFontSize(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineFontSize(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontSize property of Polyline.

setPolylineFontSize(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineFontStyle(FontStyle, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontStyle property of Polyline.

setPolylineFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Polyline.

setPolylineID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineLineCap(LineCap, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineLineCap(LineCap, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineLineCap(LineCap, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineLineCap(LineCap, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LineCap property of Polyline.

setPolylineLineCap(LineCap, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineLocked(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineLocked(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineLocked(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineLocked(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Locked property of Polyline.

setPolylineLocked(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineMarkerEnd(Marker, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineMarkerEnd(Marker, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineMarkerEnd(Marker, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineMarkerEnd(Marker, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the MarkerEnd property of Polyline.

setPolylineMarkerEnd(Marker, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineMarkerStart(Marker, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineMarkerStart(Marker, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineMarkerStart(Marker, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineMarkerStart(Marker, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the MarkerStart property of Polyline.

setPolylineMarkerStart(Marker, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylinePoints(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylinePoints(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylinePoints(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylinePoints(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Points property of Polyline.

setPolylinePoints(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineStrokeColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineStrokeColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineStrokeColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineStrokeColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeColor property of Polyline.

setPolylineStrokeColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineStrokeDashArray(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineStrokeDashArray(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineStrokeDashArray(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineStrokeDashArray(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeDashArray property of Polyline.

setPolylineStrokeDashArray(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineStrokeWidth(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineStrokeWidth(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineStrokeWidth(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineStrokeWidth(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeWidth property of Polyline.

setPolylineStrokeWidth(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineText(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineText(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineText(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineText(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Text property of Polyline.

setPolylineText(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineTheC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheC property of Polyline.

setPolylineTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineTheT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheT property of Polyline.

setPolylineTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineTheZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheZ property of Polyline.

setPolylineTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineTransform(AffineTransform, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineTransform(AffineTransform, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineTransform(AffineTransform, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineTransform(AffineTransform, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Transform property of Polyline.

setPolylineTransform(AffineTransform, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPolylineVisible(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setPolylineVisible(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setPolylineVisible(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setPolylineVisible(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Visible property of Polyline.

setPolylineVisible(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setPositionOfBof(int) - Method in class loci.poi.hssf.record.BoundSheetRecord

set the offset in bytes of the Beginning of File Marker within the HSSF Stream part of the POIFS file

setPositions(long, long, long) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

setPositionX(Length) - Method in class ome.xml.model.Plane

setPositionX(Length) - Method in class ome.xml.model.WellSample

setPositionY(Length) - Method in class ome.xml.model.Plane

setPositionY(Length) - Method in class ome.xml.model.WellSample

setPositionZ(Length) - Method in class ome.xml.model.Plane

setPower(Power) - Method in class ome.xml.model.LightSource

setPrecinctPartition(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets precinctPartition

setPredTerm(boolean) - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput

Set the flag according to whether or not the predictable termination is requested.

setPreLoad(boolean) - Method in class loci.formats.in.SDTReader

Toggles whether the reader should pre-load data for increased performance.

setPreOffset(int) - Method in class loci.poi.hssf.model.Sheet

Set the preoffset when using DBCELL records (currently unused) - this is the position of this sheet within the whole file.

setPresentationFormat(String) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the presentation format.

setPreviousChild(Child) - Method in interface loci.poi.poifs.property.Child

Set the previous Child

setPreviousChild(Child) - Method in interface loci.poi.poifs.property.Parent

Set the previous Child

setPreviousChild(Child) - Method in class loci.poi.poifs.property.Property

Set the previous Child

setPrintable(boolean) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Sets the printable field value.

setPrintArea(int, String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Sets the printarea for the sheet provided

setPrintArea(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

For the Convenience of Java Programmers maintaining pointers.

setPrintGridlines(PrintGridlinesRecord) - Method in class loci.poi.hssf.model.Sheet

Sets the PrintGridlinesRecord.

setPrintGridlines(boolean) - Method in class loci.poi.hssf.record.PrintGridlinesRecord

set whether or not to print the gridlines (and make your spreadsheet ugly)

setPrintGridlines(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Turns on or off the printing of gridlines.

setPrintHeaders(boolean) - Method in class loci.poi.hssf.record.PrintHeadersRecord

set to print the headers - y/n

setPrintSetup(PrintSetupRecord) - Method in class loci.poi.hssf.model.Sheet

Sets the PrintSetupRecord.

setPriority(int, int) - Method in class loci.formats.cache.CacheStrategy

setPriority(int, int) - Method in interface loci.formats.cache.ICacheStrategy

Sets the priority for caching the given axis.

setProgressBar(ProgressBar) - Method in class loci.plugins.util.RecordedImageProcessor

setProgressionName(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets progressionName

setProgressionType(String) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets progressionType.

setProgressionType(LayersInfo, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets progressionType

setProject(int, Project) - Method in class ome.xml.model.OME

setProjectAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setProjectAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setProjectAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setProjectAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Project.

setProjectAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setProjectDatasetRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setProjectDatasetRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setProjectDatasetRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setProjectDatasetRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the DatasetRef property of Project.

setProjectDatasetRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setProjectDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setProjectDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setProjectDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setProjectDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of Project.

setProjectDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setProjectExperimenterGroupRef(String, int) - Method in class ome.xml.meta.AggregateMetadata

setProjectExperimenterGroupRef(String, int) - Method in class ome.xml.meta.DummyMetadata

setProjectExperimenterGroupRef(String, int) - Method in class ome.xml.meta.FilterMetadata

setProjectExperimenterGroupRef(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimenterGroupRef property of Project.

setProjectExperimenterGroupRef(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setProjectExperimenterRef(String, int) - Method in class ome.xml.meta.AggregateMetadata

setProjectExperimenterRef(String, int) - Method in class ome.xml.meta.DummyMetadata

setProjectExperimenterRef(String, int) - Method in class ome.xml.meta.FilterMetadata

setProjectExperimenterRef(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExperimenterRef property of Project.

setProjectExperimenterRef(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setProjectID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setProjectID(String, int) - Method in class ome.xml.meta.DummyMetadata

setProjectID(String, int) - Method in class ome.xml.meta.FilterMetadata

setProjectID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Project.

setProjectID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setProjectName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setProjectName(String, int) - Method in class ome.xml.meta.DummyMetadata

setProjectName(String, int) - Method in class ome.xml.meta.FilterMetadata

setProjectName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of Project.

setProjectName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setProperties(Hashtable) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

setProperties(Property[]) - Method in class loci.poi.hpsf.MutableSection

Sets this section's properties.

setPropertiesFromSheet(Sheet) - Method in class loci.poi.hssf.usermodel.HSSFSheet

used internally to set the properties given a Sheet object

setPropertiesFromWorkbook(Workbook) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

used internally to set the workbook properties.

setProperty(int, String) - Method in class loci.poi.hpsf.MutableSection

Sets the string value of the property with the specified ID.

setProperty(int, int) - Method in class loci.poi.hpsf.MutableSection

Sets the int value of the property with the specified ID.

setProperty(int, long) - Method in class loci.poi.hpsf.MutableSection

Sets the long value of the property with the specified ID.

setProperty(int, boolean) - Method in class loci.poi.hpsf.MutableSection

Sets the boolean value of the property with the specified ID.

setProperty(int, long, Object) - Method in class loci.poi.hpsf.MutableSection

Sets the value and the variant type of the property with the specified ID.

setProperty(Property) - Method in class loci.poi.hpsf.MutableSection

Sets a property.

setProperty(int, Object) - Method in class loci.poi.hpsf.MutableSection

Sets a property.

setPropertyBooleanValue(int, boolean) - Method in class loci.poi.hpsf.MutableSection

Sets the value of the boolean property with the specified ID.

setPropertyStart(int) - Method in class loci.poi.poifs.storage.HeaderBlockWriter

Set start of Property Table

setPropertyType(byte) - Method in class loci.poi.poifs.property.Property

Set the property type.

setProtect(boolean) - Method in class loci.poi.hssf.record.ObjectProtectRecord

set whether the sheet is protected or not

setProtect(boolean) - Method in class loci.poi.hssf.record.ProtectionRev4Record

set whether the this is protected shared/tracked workbook or not

setProtect(boolean) - Method in class loci.poi.hssf.record.ProtectRecord

set whether the sheet is protected or not

setProtect(boolean) - Method in class loci.poi.hssf.record.ScenarioProtectRecord

set whether the sheet is protected or not

setProtect(boolean) - Method in class loci.poi.hssf.record.WindowProtectRecord

set whether this window should be protected or not

setProtect(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Deprecated.

use protectSheet(String, boolean, boolean)

setProtocolDescription(String) - Method in class ome.xml.model.Screen

setProtocolIdentifier(String) - Method in class ome.xml.model.Screen

setProtpos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

setPulse(Pulse) - Method in class ome.xml.model.Laser

setPure(boolean) - Method in class loci.poi.hpsf.CustomProperties

Sets the purity of the custom property set.

setQuality(int) - Method in class loci.formats.out.LegacyQTWriter

Sets the quality of the encoded movie.

setQuality(int) - Method in class loci.formats.out.QTWriter

Sets the quality of the encoded movie.

setQuantizationStep(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets quantizationStep

setQuantizationType(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets quantizationType

setQuiet(boolean) - Method in class loci.plugins.in.ImporterOptions

setRadiusX(Double) - Method in class ome.xml.model.Ellipse

setRadiusY(Double) - Method in class ome.xml.model.Ellipse

setRange(int, int) - Method in class loci.formats.cache.CacheStrategy

setRange(int, int) - Method in interface loci.formats.cache.ICacheStrategy

Sets the number of objects to cache along the given axis.

setRaw(boolean) - Method in class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam

Sets the representation to be used.

setRawData(byte[]) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

setReader(ImageReader) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the reader field.

setReader(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setReader(IFormatReader) - Method in class loci.plugins.util.VirtualImagePlus

setReaderClassList(ClassList<IFormatReader>) - Method in class loci.formats.FileStitcher

Set the ClassList object to use when constructing any helper readers.

setReaderEnabled(FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow

setReaderPref(String, FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow

setReaderWindowless(FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow

setReadingOrder(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the reading order for far east versions (0 - Context, 1 - Left to right, 2 - right to left) - We could use some help with support for the far east.

setReadOnly(short) - Method in class loci.poi.hssf.record.FileSharingRecord

set the readonly flag

setReadOutRate(Frequency) - Method in class ome.xml.model.DetectorSettings

setReagent(int, Reagent) - Method in class ome.xml.model.Screen

setReagentAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setReagentAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setReagentAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setReagentAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Reagent.

setReagentAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setReagentDescription(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setReagentDescription(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setReagentDescription(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setReagentDescription(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of Reagent.

setReagentDescription(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setReagentID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setReagentID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setReagentID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setReagentID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Reagent.

setReagentID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setReagentIdentifier(String) - Method in class ome.xml.model.Reagent

setReagentName(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setReagentName(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setReagentName(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setReagentName(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of Reagent.

setReagentName(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setReagentReagentIdentifier(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setReagentReagentIdentifier(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setReagentReagentIdentifier(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setReagentReagentIdentifier(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ReagentIdentifier property of Reagent.

setReagentReagentIdentifier(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setReagentSetDescription(String) - Method in class ome.xml.model.Screen

setReagentSetIdentifier(String) - Method in class ome.xml.model.Screen

setRecalc(boolean) - Method in class loci.poi.hssf.record.SaveRecalcRecord

set whether to recalculate formulas/etc before saving or not

setRecalcIdArray(short[]) - Method in class loci.poi.hssf.record.RecalcIdRecord

set the recalc array.

setRecordId(short) - Method in class loci.poi.ddf.EscherRecord

Sets the record id for this record.

setRecords(List) - Method in class loci.poi.hssf.model.WorkbookRecordList

setRectangleAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Rectangle.

setRectangleAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleFillColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleFillColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleFillColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleFillColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillColor property of Rectangle.

setRectangleFillColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleFillRule(FillRule, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleFillRule(FillRule, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleFillRule(FillRule, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleFillRule(FillRule, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FillRule property of Rectangle.

setRectangleFillRule(FillRule, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleFontFamily(FontFamily, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontFamily property of Rectangle.

setRectangleFontFamily(FontFamily, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleFontSize(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleFontSize(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleFontSize(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleFontSize(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontSize property of Rectangle.

setRectangleFontSize(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleFontStyle(FontStyle, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FontStyle property of Rectangle.

setRectangleFontStyle(FontStyle, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleHeight(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleHeight(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleHeight(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleHeight(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Height property of Rectangle.

setRectangleHeight(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Rectangle.

setRectangleID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleLineCap(LineCap, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleLineCap(LineCap, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleLineCap(LineCap, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleLineCap(LineCap, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the LineCap property of Rectangle.

setRectangleLineCap(LineCap, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleLocked(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleLocked(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleLocked(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleLocked(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Locked property of Rectangle.

setRectangleLocked(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleStrokeColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleStrokeColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleStrokeColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleStrokeColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeColor property of Rectangle.

setRectangleStrokeColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleStrokeDashArray(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleStrokeDashArray(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleStrokeDashArray(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleStrokeDashArray(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeDashArray property of Rectangle.

setRectangleStrokeDashArray(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleStrokeWidth(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleStrokeWidth(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleStrokeWidth(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleStrokeWidth(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the StrokeWidth property of Rectangle.

setRectangleStrokeWidth(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleText(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleText(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleText(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleText(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Text property of Rectangle.

setRectangleText(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleTheC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheC property of Rectangle.

setRectangleTheC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleTheT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheT property of Rectangle.

setRectangleTheT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleTheZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the TheZ property of Rectangle.

setRectangleTheZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleTransform(AffineTransform, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleTransform(AffineTransform, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleTransform(AffineTransform, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleTransform(AffineTransform, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Transform property of Rectangle.

setRectangleTransform(AffineTransform, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleVisible(Boolean, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleVisible(Boolean, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleVisible(Boolean, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleVisible(Boolean, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Visible property of Rectangle.

setRectangleVisible(Boolean, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleWidth(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleWidth(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleWidth(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleWidth(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Width property of Rectangle.

setRectangleWidth(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleX(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleX(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleX(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleX(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the X property of Rectangle.

setRectangleX(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectangleY(Double, int, int) - Method in class ome.xml.meta.AggregateMetadata

setRectangleY(Double, int, int) - Method in class ome.xml.meta.DummyMetadata

setRectangleY(Double, int, int) - Method in class ome.xml.meta.FilterMetadata

setRectangleY(Double, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Y property of Rectangle.

setRectangleY(Double, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRectX1(int) - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

setRectX2(int) - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

setRectY1(int) - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

setRectY2(int) - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

setRed(int) - Method in class loci.poi.util.BinaryTree.Node

make this node red

setRef(int) - Method in class loci.poi.ddf.EscherBSERecord

The reference count of this blip.

setRefCount(int) - Method in class loci.plugins.util.VirtualReader

setReference(String) - Method in class loci.poi.hssf.usermodel.HSSFName

sets the reference of this named range

setReferenceType(byte) - Method in class loci.poi.hssf.record.LinkedDataRecord

Set the reference type field for the LinkedData record.

setRefractiveIndex(Double) - Method in class ome.xml.model.ObjectiveSettings

setRefreshAll(boolean) - Method in class loci.poi.hssf.record.RefreshAllRecord

set whether to refresh all external data when loading a sheet

setRemainingData(byte[]) - Method in class loci.poi.ddf.EscherBSERecord

Any remaining data in this record.

setRemainingData(byte[]) - Method in class loci.poi.ddf.EscherClientAnchorRecord

Any remaining data in the record

setRemainingData(byte[]) - Method in class loci.poi.ddf.EscherClientDataRecord

Any data recording this record.

setRenderingHint(RenderingHints.Key, Object) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setRenderingHint(RenderingHints.Key, Object) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setRepeatingRowsAndColumns(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Sets the repeating rows and columns for a sheet (as found in File->PageSetup->Sheet).

setRepetitionRate(Frequency) - Method in class ome.xml.model.Laser

setRequiredVersion(int) - Method in class loci.poi.hssf.record.BOFRecord

set the minimum version required to read this file

setReserved(int) - Method in class loci.poi.hssf.record.formula.MemAreaPtg

setReserved(int) - Method in class loci.poi.hssf.record.formula.RefErrorPtg

setReserved(boolean) - Method in class loci.poi.hssf.record.ValueRangeRecord

Sets the reserved field value.

setReserved(int) - Method in class loci.poi.hssf.record.WindowTwoRecord

set the reserved (don't do this) value

setReserved1(int) - Method in class loci.poi.hssf.record.AxisRecord

Set the reserved1 field for the Axis record.

setReserved1(int) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Set the reserved1 field for the CommonObjectData record.

setReserved1(boolean) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Sets the reserved1 field value.

setReserved2(int) - Method in class loci.poi.hssf.record.AxisRecord

Set the reserved2 field for the Axis record.

setReserved2(int) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Set the reserved2 field for the CommonObjectData record.

setReserved2(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Sets the reserved2 field value.

setReserved3(int) - Method in class loci.poi.hssf.record.AxisRecord

Set the reserved3 field for the Axis record.

setReserved3(int) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Set the reserved3 field for the CommonObjectData record.

setReserved3(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Sets the reserved3 field value.

setReserved4(int) - Method in class loci.poi.hssf.record.AxisRecord

Set the reserved4 field for the Axis record.

setReserved4(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Set the reserved4 field for the TextObjectBase record.

setReserved5(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Set the reserved5 field for the TextObjectBase record.

setReserved6(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Set the reserved6 field for the TextObjectBase record.

setReserved7(int) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Set the reserved7 field for the TextObjectBase record.

setResetMQ(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets resetMQ

setResolution(int) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Sets resolution.

setResolution(int) - Method in class loci.formats.DelegateReader

setResolution(int) - Method in class loci.formats.FormatReader

setResolution(int) - Method in interface loci.formats.IFormatReader

Set the resolution level.

setResolution(int) - Method in class loci.formats.ImageReader

setResolution(int) - Method in class loci.formats.in.FilePatternReader

setResolution(int) - Method in class loci.formats.ReaderWrapper

setResolutionLevel(IFD) - Method in class loci.formats.in.MinimalTiffReader

Sets the resolution level when we have JPEG 2000 compressed data.

setRestartMarkers(long[]) - Method in interface loci.formats.services.JPEGTurboService

setRestartMarkers(long[]) - Method in class loci.formats.services.JPEGTurboServiceImpl

setReversed(boolean) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Sets the reversed field value.

setRevNumber(String) - Method in class loci.poi.hpsf.SummaryInformation

Sets the revision number.

setRgbColor(int) - Method in class loci.poi.hssf.record.TextRecord

Set the rgbColor field for the Text record.

setRight(String) - Method in class loci.poi.hssf.usermodel.HSSFFooter

Sets the right string.

setRight(String) - Method in class loci.poi.hssf.usermodel.HSSFHeader

Sets the right string.

setRight(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree.Node

Set this node's right node

setRight(Object) - Method in class mdbtools.dbengine.sql.Condition

setRight(Object) - Method in class mdbtools.dbengine.sql.Equation

setRight(Table) - Method in class mdbtools.dbengine.sql.Join

setRightBorderColor(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the color to use for the right border

setRightBorderPaletteIdx(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the palette index for the right border color

setRights(Rights) - Method in class ome.xml.model.OME

setRightsHeld(String) - Method in class ome.xml.model.Rights

setRightsHolder(String) - Method in class ome.xml.model.Rights

setRightsRightsHeld(String) - Method in class ome.xml.meta.AggregateMetadata

setRightsRightsHeld(String) - Method in class ome.xml.meta.DummyMetadata

setRightsRightsHeld(String) - Method in class ome.xml.meta.FilterMetadata

setRightsRightsHeld(String) - Method in interface ome.xml.meta.MetadataStore

Set the RightsHeld property of Rights.

setRightsRightsHeld(String) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRightsRightsHolder(String) - Method in class ome.xml.meta.AggregateMetadata

setRightsRightsHolder(String) - Method in class ome.xml.meta.DummyMetadata

setRightsRightsHolder(String) - Method in class ome.xml.meta.FilterMetadata

setRightsRightsHolder(String) - Method in interface ome.xml.meta.MetadataStore

Set the RightsHolder property of Rights.

setRightsRightsHolder(String) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRoi(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

setRoi(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor

setRoi(Rectangle) - Method in class loci.plugins.util.RecordedImageProcessor

setRoi(Roi) - Method in class loci.plugins.util.RecordedImageProcessor

setROI(int, ROI) - Method in class ome.xml.model.OME

setROIAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setROIAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setROIAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setROIAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of ROI.

setROIAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setROIDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setROIDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setROIDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setROIDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of ROI.

setROIDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setROIID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setROIID(String, int) - Method in class ome.xml.meta.DummyMetadata

setROIID(String, int) - Method in class ome.xml.meta.FilterMetadata

setROIID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of ROI.

setROIID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setROIName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setROIName(String, int) - Method in class ome.xml.meta.DummyMetadata

setROIName(String, int) - Method in class ome.xml.meta.FilterMetadata

setROIName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of ROI.

setROIName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setROINamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setROINamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setROINamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setROINamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of ROI.

setROINamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setROIs(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets ROIs

setRoot(MetadataRoot) - Method in class ome.xml.meta.AggregateMetadata

Unsupported with an AggregateMetadata.

setRoot(MetadataRoot) - Method in class ome.xml.meta.DummyMetadata

setRoot(MetadataRoot) - Method in class ome.xml.meta.FilterMetadata

setRoot(MetadataRoot) - Method in interface ome.xml.meta.MetadataStore

Set the root node of the metadata.

setRoot(MetadataRoot) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setRootLevelRVA(Node, int) - Method in class loci.poi.hssf.model.FormulaParser

setRotation(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the degree of rotation.

setRotation(short) - Method in class loci.poi.hssf.record.TextRecord

Sets the rotation field value.

setRotation(short) - Method in class loci.poi.hssf.record.TickRecord

Sets the rotation field value.

setRotation(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the degree of rotation for the text in the cell

setRow(int) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

setRow(int) - Method in class loci.poi.hssf.record.BlankRecord

set the row this cell occurs on

setRow(int) - Method in class loci.poi.hssf.record.BoolErrRecord

setRow(int) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

set the row this cell occurs on

setRow(short) - Method in class loci.poi.hssf.record.formula.Ref3DPtg

setRow(short) - Method in class loci.poi.hssf.record.formula.ReferencePtg

setRow(int) - Method in class loci.poi.hssf.record.formula.ReferencePtg

setRow(int) - Method in class loci.poi.hssf.record.FormulaRecord

setRow(int) - Method in class loci.poi.hssf.record.LabelRecord

NO-OP!

setRow(int) - Method in class loci.poi.hssf.record.LabelSSTRecord

setRow(short) - Method in class loci.poi.hssf.record.NoteRecord

Specify the row that contains the comment

setRow(int) - Method in class loci.poi.hssf.record.NumberRecord

setRow(int) - Method in class loci.poi.hssf.record.RKRecord

setRow(int) - Method in class loci.poi.hssf.usermodel.HSSFComment

Set the row of the cell that contains the comment

setRow(NonNegativeInteger) - Method in class ome.xml.model.Well

setRow1(short) - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the top-left corner of the shape.

setRow1(int) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

setRow2(short) - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the bottom-right corner of the current shape.

setRow2(int) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

setRowBreak(int, short, short) - Method in class loci.poi.hssf.model.Sheet

Sets a page break at the indicated row

setRowBreak(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets a page break at the indicated row

setRowCount(short) - Method in class loci.poi.hssf.record.formula.ArrayPtg

setRowFrom(int) - Method in class loci.poi.hssf.util.Region

set the upper left hand corner row number

setRowGroupCollapsed(int, boolean) - Method in class loci.poi.hssf.model.Sheet

setRowGroupCollapsed(int, boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

setRowHeight(short) - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

set the default row height

setRowLevelMax(short) - Method in class loci.poi.hssf.record.GutsRecord

set the maximum outline level for the row gutter.

setRowNamingConvention(NamingConvention) - Method in class ome.xml.model.Plate

setRowNum(int) - Method in class loci.poi.hssf.usermodel.HSSFRow

set the row number of this row.

setRowNumber(int) - Method in class loci.poi.hssf.record.RowRecord

set the logical row number for this row (0 based index)

setRowOffset(int) - Method in class loci.poi.hssf.record.DBCellRecord

sets offset from the start of this DBCellRecord to the start of the first cell in the next DBCell block.

setRowRelative(boolean) - Method in class loci.poi.hssf.record.formula.Ref3DPtg

setRowRelative(boolean) - Method in class loci.poi.hssf.record.formula.ReferencePtg

setRows(PositiveInteger) - Method in class ome.xml.model.Plate

setRowSumsBelow(boolean) - Method in class loci.poi.hssf.record.WSBoolRecord

set if row summaries appear below detail in the outline

setRowSumsBelow(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

set if row summaries appear below detail in the outline

setRowSumsRight(boolean) - Method in class loci.poi.hssf.record.WSBoolRecord

set if col summaries appear right of the detail in the outline

setRowSumsRight(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

set if col summaries appear right of the detail in the outline

setRowTo(int) - Method in class loci.poi.hssf.util.Region

get the lower right hand corner row number

setSampleFormat(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the sampleFormat field.

setSampleFormat(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setSampleModelAndMore() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

setSamplesPerPixel(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the samplesPerPixel field.

setSamplesPerPixel(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setSamplesPerPixel(PositiveInteger) - Method in class ome.xml.model.Channel

setSavedInPageBreakPreview(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

was the sheet saved in page break view

setSaveLinkValues(short) - Method in class loci.poi.hssf.record.BookBoolRecord

set the save ext links flag

setSBATBlockCount(int) - Method in class loci.poi.poifs.storage.HeaderBlockWriter

Set count of SBAT blocks

setSBATStart(int) - Method in class loci.poi.poifs.storage.HeaderBlockWriter

Set start of small block allocation table

setScale(boolean) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the scale.

setScale(short) - Method in class loci.poi.hssf.record.FontBasisRecord

Set the scale field for the FontBasis record.

setScale(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

setScale(short) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set the scale.

setSCLRecord(SCLRecord) - Method in class loci.poi.hssf.model.Sheet

Sets the SCL record or creates it in the correct place if it does not already exist.

setScreen(int, Screen) - Method in class ome.xml.model.OME

setScreen(Screen) - Method in class ome.xml.model.Reagent

setScreenAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setScreenAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setScreenAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Screen.

setScreenAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setScreenDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setScreenDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setScreenDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of Screen.

setScreenDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setScreenID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenID(String, int) - Method in class ome.xml.meta.DummyMetadata

setScreenID(String, int) - Method in class ome.xml.meta.FilterMetadata

setScreenID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Screen.

setScreenID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setScreenName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenName(String, int) - Method in class ome.xml.meta.DummyMetadata

setScreenName(String, int) - Method in class ome.xml.meta.FilterMetadata

setScreenName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of Screen.

setScreenName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setScreenPlateRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenPlateRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setScreenPlateRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setScreenPlateRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PlateRef property of Screen.

setScreenPlateRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setScreenProtocolDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenProtocolDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setScreenProtocolDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setScreenProtocolDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ProtocolDescription property of Screen.

setScreenProtocolDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setScreenProtocolIdentifier(String, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenProtocolIdentifier(String, int) - Method in class ome.xml.meta.DummyMetadata

setScreenProtocolIdentifier(String, int) - Method in class ome.xml.meta.FilterMetadata

setScreenProtocolIdentifier(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ProtocolIdentifier property of Screen.

setScreenProtocolIdentifier(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setScreenReagentSetDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenReagentSetDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setScreenReagentSetDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setScreenReagentSetDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ReagentSetDescription property of Screen.

setScreenReagentSetDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setScreenReagentSetIdentifier(String, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenReagentSetIdentifier(String, int) - Method in class ome.xml.meta.DummyMetadata

setScreenReagentSetIdentifier(String, int) - Method in class ome.xml.meta.FilterMetadata

setScreenReagentSetIdentifier(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ReagentSetIdentifier property of Screen.

setScreenReagentSetIdentifier(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setScreenType(String, int) - Method in class ome.xml.meta.AggregateMetadata

setScreenType(String, int) - Method in class ome.xml.meta.DummyMetadata

setScreenType(String, int) - Method in class ome.xml.meta.FilterMetadata

setScreenType(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Screen.

setScreenType(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setSecondaryUID(byte[]) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set the secondary UID

setSecurity(int) - Method in class loci.poi.hpsf.SummaryInformation

Sets the security code.

setSegmentLength(int) - Method in class com.sun.media.imageio.stream.StreamSegment

Sets the length of the segment.

setSelected(boolean) - Method in class loci.poi.hssf.model.Sheet

Sets whether the sheet is selected

setSelected(boolean) - Method in class loci.poi.hssf.record.WindowTwoRecord

sheet tab is selected

setSelected(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets whether sheet is selected.

setSelectedTab(short) - Method in class loci.poi.hssf.record.WindowOneRecord

set the selected tab number

setSelectedTab(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

sets the tab whose data is actually seen when the sheet is opened.

setSelection(SelectionRecord) - Method in class loci.poi.hssf.model.Sheet

setSerialNumber(String) - Method in class ome.xml.model.ManufacturerSpec

setSeries(int) - Method in class loci.formats.DelegateReader

setSeries(int) - Method in class loci.formats.FileStitcher

setSeries(int) - Method in class loci.formats.FormatReader

setSeries(int) - Method in class loci.formats.FormatWriter

setSeries(int) - Method in interface loci.formats.IFormatReader

Activates the specified series.

setSeries(int) - Method in interface loci.formats.IFormatWriter

Sets the current series.

setSeries(int) - Method in class loci.formats.ImageReader

setSeries(int) - Method in class loci.formats.ImageWriter

setSeries(int) - Method in class loci.formats.in.FilePatternReader

setSeries(int) - Method in class loci.formats.in.IM3Reader

setSeries(int) - Method in class loci.formats.in.ZeissLSMReader

setSeries(int) - Method in class loci.formats.ReaderWrapper

setSeries(int) - Method in class loci.formats.WriterWrapper

setSeries(Double) - Method in class loci.plugins.macro.LociFunctions

setSeries(int) - Method in class loci.tests.testng.Configuration

setSeriesIndex(short) - Method in class loci.poi.hssf.record.DataFormatRecord

Set the series index field for the DataFormat record.

setSeriesList(String) - Method in class loci.plugins.in.ImportProcess

setSeriesNumber(short) - Method in class loci.poi.hssf.record.DataFormatRecord

Set the series number field for the DataFormat record.

setSeriesNumbers(short[]) - Method in class loci.poi.hssf.record.SeriesListRecord

Set the series numbers field for the SeriesList record.

setSeriesOn(int, boolean) - Method in class loci.plugins.in.ImporterOptions

setSHA1(String) - Method in class ome.xml.model.External

setShadow(boolean) - Method in class loci.poi.hssf.record.AreaRecord

Sets the shadow field value.

setShadow(boolean) - Method in class loci.poi.hssf.record.BarRecord

Sets the shadow field value.

setShape(int, Shape) - Method in class ome.xml.model.Union

setShapeId(int) - Method in class loci.poi.ddf.EscherSpRecord

Sets a number that identifies this shape.

setShapeId(short) - Method in class loci.poi.hssf.record.NoteRecord

Object id for OBJ record that contains the comment

setShapeIdMax(int) - Method in class loci.poi.ddf.EscherDggRecord

The maximum is actually the next available.

setShapeType(int) - Method in class loci.poi.hssf.usermodel.HSSFSimpleShape

Sets the shape types.

setSharedFormula(boolean) - Method in class loci.poi.hssf.record.FormulaRecord

setSheetBof(int, int) - Method in class loci.poi.hssf.model.Workbook

Sets the BOF for a given sheet

setSheetName(int, String) - Method in class loci.poi.hssf.model.Workbook

sets the name for a given sheet.

setSheetName(int, String, short) - Method in class loci.poi.hssf.model.Workbook

Deprecated.

3-Jan-06 Simply use setSheetNam e(int sheetnum, String sheetname)

setSheetname(String) - Method in class loci.poi.hssf.record.BoundSheetRecord

Set the sheetname for this sheet.

setSheetName(String) - Method in class loci.poi.hssf.usermodel.HSSFName

sets the sheet name which this named range referenced to

setSheetName(int, String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

set the sheet name.

setSheetName(int, String, short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

3-Jan-2006 POI now automatically detects unicode and sets the encoding appropriately. Simply use setSheetName(int sheet, String encoding)

setSheetnameLength(byte) - Method in class loci.poi.hssf.record.BoundSheetRecord

Set the length of the sheetname in characters

setSheetOrder(String, int) - Method in class loci.poi.hssf.model.Workbook

sets the order of appearance for a given sheet.

setSheetOrder(String, int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

sets the order of appearance for a given sheet.

setShort(short) - Method in class loci.poi.util.BitField

Set the bits.

setShortBoolean(short, boolean) - Method in class loci.poi.util.BitField

Set a boolean BitField

setShortValue(short, short) - Method in class loci.poi.util.BitField

Replace the bits with new values.

setShowActual(boolean) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Sets the show actual field value.

setShowBubbleSizes(boolean) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Sets the show bubble sizes field value.

setShowBubbleSizes(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the show bubble sizes field value.

setShowCategoryLabelAsPercentage(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the show category label as percentage field value.

setShowKey(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the show key field value.

setShowLabel(boolean) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Sets the show label field value.

setShowLabel(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the show label field value.

setShowMetadata(boolean) - Method in class loci.plugins.in.ImporterOptions

setShowOMEXML(boolean) - Method in class loci.plugins.in.ImporterOptions

setShowPercent(boolean) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Sets the show percent field value.

setShowROIs(boolean) - Method in class loci.plugins.in.ImporterOptions

setShowSeriesKey(boolean) - Method in class loci.poi.hssf.record.DatRecord

Sets the show series key field value.

setShowValue(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the show value field value.

setShowValueAsPercentage(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the show value as percentage field value.

setShrinkToFit(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether to shrink the text to fit

setSignificantBits(PositiveInteger) - Method in class ome.xml.model.Pixels

setSize(int) - Method in class loci.formats.tiff.OnDemandLongArray

setSize(int) - Method in class loci.poi.ddf.EscherBSERecord

Blip size in stream.

setSize(int, int) - Method in class loci.poi.hssf.util.RangeAddress

setSize(int) - Method in class loci.poi.poifs.property.Property

Set the size of the document associated with this Property

setSize(int) - Method in class loci.poi.poifs.property.RootProperty

set size

setSize(NonNegativeLong) - Method in class ome.xml.model.BinaryFile

setSizeC(PositiveInteger) - Method in class ome.xml.model.Pixels

setSizeEMU(Dimension) - Method in class loci.poi.ddf.EscherMetafileBlip

setSizeEMU(Dimension) - Method in class loci.poi.ddf.EscherPictBlip

setSizeOfElements(int) - Method in class loci.poi.ddf.EscherArrayProperty

setSizeT(PositiveInteger) - Method in class ome.xml.model.Pixels

setSizeX(PositiveInteger) - Method in class ome.xml.model.Pixels

setSizeY(PositiveInteger) - Method in class ome.xml.model.Pixels

setSizeZ(PositiveInteger) - Method in class ome.xml.model.Pixels

setSlice(int) - Method in class loci.plugins.util.VirtualImagePlus

setSlideCount(int) - Method in class loci.poi.hpsf.DocumentSummaryInformation

Sets the slideCount.

setSmoothedLine(boolean) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Sets the smoothed line field value.

setSnapshotCopyMode(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

setSnapshotPixels(Object) - Method in class loci.plugins.util.RecordedImageProcessor

setSOP(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets SOP.

setSOP(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets SOP

setSort(Object) - Method in class mdbtools.dbengine.sql.OrderBy

setSource(ICacheSource) - Method in class loci.formats.cache.Cache

Sets the cache's caching source.

setSourceBands(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the sourceBands field.

setSourceBands(int[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Override the method setSourceBands in the super class.

setSourceBands(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setSourceImage(byte[], int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Associate an uncompressed source image with this compressor instance.

setSourceSubsampling(int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Override the method setSourceSubsampling in the super class.

setSourceXOffset(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the sourceXOffset field.

setSourceXOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setSourceYOffset(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the sourceYOffset.

setSourceYOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setSpacing(byte) - Method in class loci.poi.hssf.record.LegendRecord

Set the spacing field for the Legend record.

setSpecifyRanges(boolean) - Method in class loci.plugins.in.ImporterOptions

setSplitChannels(boolean) - Method in class loci.plugins.in.ImporterOptions

setSplitFocalPlanes(boolean) - Method in class loci.plugins.in.ImporterOptions

setSplitTimepoints(boolean) - Method in class loci.plugins.in.ImporterOptions

setSrcHeight(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the srcHeight field.

setSrcHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setSrcMinX(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the srcMinX field.

setSrcMinX(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setSrcMinY(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the srcMinY field.

setSrcMinY(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setSrcWidth(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the srcWidth field.

setSrcWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setSSTIndex(int) - Method in class loci.poi.hssf.record.LabelSSTRecord

set the index to the string in the SSTRecord

setStacked(boolean) - Method in class loci.poi.hssf.record.AreaRecord

Sets the stacked field value.

setStacked(boolean) - Method in class loci.poi.hssf.record.BarRecord

Sets the stacked field value.

setStackFormat(String) - Method in class loci.plugins.in.ImporterOptions

setStackOrder(String) - Method in class loci.plugins.in.ImporterOptions

setStageLabel(StageLabel) - Method in class ome.xml.model.Image

setStageLabelName(String, int) - Method in class ome.xml.meta.AggregateMetadata

setStageLabelName(String, int) - Method in class ome.xml.meta.DummyMetadata

setStageLabelName(String, int) - Method in class ome.xml.meta.FilterMetadata

setStageLabelName(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Name property of StageLabel.

setStageLabelName(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setStageLabelX(Length, int) - Method in class ome.xml.meta.AggregateMetadata

setStageLabelX(Length, int) - Method in class ome.xml.meta.DummyMetadata

setStageLabelX(Length, int) - Method in class ome.xml.meta.FilterMetadata

setStageLabelX(Length, int) - Method in interface ome.xml.meta.MetadataStore

Set the X property of StageLabel.

setStageLabelX(Length, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setStageLabelY(Length, int) - Method in class ome.xml.meta.AggregateMetadata

setStageLabelY(Length, int) - Method in class ome.xml.meta.DummyMetadata

setStageLabelY(Length, int) - Method in class ome.xml.meta.FilterMetadata

setStageLabelY(Length, int) - Method in interface ome.xml.meta.MetadataStore

Set the Y property of StageLabel.

setStageLabelY(Length, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setStageLabelZ(Length, int) - Method in class ome.xml.meta.AggregateMetadata

setStageLabelZ(Length, int) - Method in class ome.xml.meta.DummyMetadata

setStageLabelZ(Length, int) - Method in class ome.xml.meta.FilterMetadata

setStageLabelZ(Length, int) - Method in interface ome.xml.meta.MetadataStore

Set the Z property of StageLabel.

setStageLabelZ(Length, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setStartBlock(int) - Method in interface loci.poi.poifs.filesystem.BATManaged

Set the start block for this instance

setStartBlock(int) - Method in class loci.poi.poifs.filesystem.POIFSDocument

Set the start block for this instance

setStartBlock(int) - Method in class loci.poi.poifs.property.Property

Set the start block for the document referred to by this Property.

setStartBlock(int) - Method in class loci.poi.poifs.property.PropertyTable

Set the start block for this instance

setStartBlock(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Set the start block for this instance

setStartBlock(int) - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Set the start block for this instance

setStartLevelROI(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets the startLevelROI

setStartPos(long) - Method in class com.sun.media.imageio.stream.StreamSegment

Sets the starting position of the segment.

setStartTime(Timestamp) - Method in class ome.xml.model.PlateAcquisition

setStatus(String) - Method in class ome.xml.model.Plate

setStatusBarLength(byte) - Method in class loci.poi.hssf.record.NameRecord

sets the length of the status bar text

setStatusBarText(String) - Method in class loci.poi.hssf.record.NameRecord

sets the status bar text

setStitchTiles(boolean) - Method in class loci.plugins.in.ImporterOptions

setStorageClsid(ClassID) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

Sets the storage clsid for the directory entry

setStorageClsid(ClassID) - Method in class loci.poi.poifs.filesystem.DirectoryNode

Sets the storage clsid for the directory entry

setStorageClsid(ClassID) - Method in class loci.poi.poifs.property.Property

Sets the storage class ID for this property stream.

setStr(HSSFRichTextString) - Method in class loci.poi.hssf.record.TextObjectRecord

setStrategy(ICacheStrategy) - Method in class loci.formats.cache.Cache

Sets the cache's caching strategy.

setStream(ImageOutputStream) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Sets the ImageOutputStream to be written.

setStream(ImageInputStream) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the stream field.

setStream(ImageOutputStream) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor

setStream(ImageInputStream) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

setStream(RandomAccessInputStream) - Method in class loci.formats.tiff.OnDemandLongArray

setStreamPos(int) - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

setStrikeout(boolean) - Method in class loci.poi.hssf.record.FontRecord

set the font to be stricken out or not

setStrikeout(boolean) - Method in class loci.poi.hssf.usermodel.HSSFFont

set whether to use a strikeout horizontal line through the text or not

setString(String) - Method in class loci.poi.hssf.record.StringRecord

Sets the string represented by this record.

setString(String) - Method in class loci.poi.hssf.record.UnicodeString

set the actual string this contains

setString(HSSFRichTextString) - Method in class loci.poi.hssf.usermodel.HSSFComment

Sets the rich text string used by this comment.

setString(HSSFRichTextString) - Method in class loci.poi.hssf.usermodel.HSSFTextbox

setStringRecord(StringRecord) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

setStroke(Stroke) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setStroke(Stroke) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setStrokeColor(Color) - Method in class ome.xml.model.Shape

setStrokeDashArray(String) - Method in class ome.xml.model.Shape

setStrokeWidth(Length) - Method in class ome.xml.model.Shape

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.BooleanAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.CommentAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.DoubleAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.FileAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.ListAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.LongAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.MapAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.OME

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.TagAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.TermAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.TimestampAnnotation

setStructuredAnnotations(StructuredAnnotations) - Method in class ome.xml.model.XMLAnnotation

setSubexpressionLength(short) - Method in class loci.poi.hssf.record.formula.MemAreaPtg

setSubject(String) - Method in class loci.poi.hpsf.SummaryInformation

Sets the subject.

setSubsamp(int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Set the level of chrominance subsampling for subsequent compress/encode operations.

setSubsampleX(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the subsampleX field.

setSubsampleY(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Sets the value of the subsampleY field.

setSum(boolean) - Method in class loci.poi.hssf.record.formula.AttrPtg

setSupbookpos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

Sets the supbookpos.

setSuperProperties() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

setSuperSubScript(short) - Method in class loci.poi.hssf.record.FontRecord

set the type of super or subscript for the font

setSwapDimensions(boolean) - Method in class loci.plugins.in.ImporterOptions

setSymbol(String) - Method in class ome.units.unit.Unit

setTabIdArray(short[]) - Method in class loci.poi.hssf.record.TabIdRecord

set the tab array.

setTable(int) - Method in class mdbtools.dbengine.sql.FQColumn

setTabpos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

setTabWidthRatio(short) - Method in class loci.poi.hssf.record.WindowOneRecord

ratio of the width of the tabs to the horizontal scrollbar

setTag(short) - Method in class loci.poi.ddf.EscherBSERecord

unused

setTagAnnotation(int, TagAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setTagAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTagAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setTagAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setTagAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of TagAnnotation.

setTagAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTagAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTagAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setTagAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setTagAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of TagAnnotation.

setTagAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTagAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTagAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setTagAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setTagAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of TagAnnotation.

setTagAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTagAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTagAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setTagAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setTagAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of TagAnnotation.

setTagAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTagAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTagAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setTagAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setTagAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of TagAnnotation.

setTagAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTagAnnotationValue(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTagAnnotationValue(String, int) - Method in class ome.xml.meta.DummyMetadata

setTagAnnotationValue(String, int) - Method in class ome.xml.meta.FilterMetadata

setTagAnnotationValue(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Value property of TagAnnotation.

setTagAnnotationValue(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTarget(Runnable, Object, boolean) - Method in class jj2000.j2k.util.ThreadPool.ThreadPoolThread

Assigns a target to this thread, with an optional notify lock and a notify mode.

setTBegin(int, int) - Method in class loci.plugins.in.ImporterOptions

setTemperature(Temperature) - Method in class ome.xml.model.ImagingEnvironment

setTemplate(String) - Method in class loci.poi.hpsf.SummaryInformation

Sets the template.

setTEnd(int, int) - Method in class loci.plugins.in.ImporterOptions

setTermAnnotation(int, TermAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setTermAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTermAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setTermAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setTermAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of TermAnnotation.

setTermAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTermAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTermAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setTermAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setTermAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of TermAnnotation.

setTermAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTermAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTermAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setTermAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setTermAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of TermAnnotation.

setTermAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTermAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTermAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setTermAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setTermAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of TermAnnotation.

setTermAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTermAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTermAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setTermAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setTermAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of TermAnnotation.

setTermAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTermAnnotationValue(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTermAnnotationValue(String, int) - Method in class ome.xml.meta.DummyMetadata

setTermAnnotationValue(String, int) - Method in class ome.xml.meta.FilterMetadata

setTermAnnotationValue(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Value property of TermAnnotation.

setTermAnnotationValue(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTerminateOnByte(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Sets terminateOnByte

setTermType(int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

Set termination type to the specified type

setText(String) - Method in class loci.poi.hssf.record.SeriesTextRecord

Set the text field for the SeriesText record.

setText(String) - Method in class ome.xml.model.Shape

setTextLength(byte) - Method in class loci.poi.hssf.record.SeriesTextRecord

Set the text length field for the SeriesText record.

setTextLength(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Set the text length field for the TextObjectBase record.

setTextLocked(boolean) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Sets the text locked field value.

setTextOrientation(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Set the text orientation field for the TextObjectBase record.

setTextRotation(short) - Method in class loci.poi.hssf.record.TextRecord

Set the text rotation field for the Text record.

setTheC(NonNegativeInteger) - Method in class ome.xml.model.Plane

setTheC(NonNegativeInteger) - Method in class ome.xml.model.Shape

setTheT(NonNegativeInteger) - Method in class ome.xml.model.Plane

setTheT(NonNegativeInteger) - Method in class ome.xml.model.Shape

setTheZ(NonNegativeInteger) - Method in class ome.xml.model.Plane

setTheZ(NonNegativeInteger) - Method in class ome.xml.model.Shape

setThreadConcurrency(int) - Static method in class jj2000.j2k.util.NativeServices

Sets the concurrency level of the threading system of the Java Virtual Machine (JVM) to the specified level.

setThreadConcurrencyN(int) - Static method in class jj2000.j2k.util.NativeServices

Calls the POSIX threads 'pthread_setconcurrency', or equivalent, function with 'level' as the argument.

setThreshold(double, double, int) - Method in class loci.plugins.util.RecordedImageProcessor

setThumbnail(byte[]) - Method in class loci.poi.hpsf.SummaryInformation

Sets the thumbnail.

setThumbnail(byte[]) - Method in class loci.poi.hpsf.Thumbnail

Sets the Thumbnail's underlying byte[] in VT_CF format.

setTickColor(short) - Method in class loci.poi.hssf.record.TickRecord

Set the tick color field for the Tick record.

setTickMarkFrequency(short) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Set the tick mark frequency field for the CategorySeriesAxis record.

setTIFFCompressor(TIFFCompressor) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Sets the TIFFCompressor object to be used by the ImageWriter to encode each image strip or tile.

setTiffData(int, TiffData) - Method in class ome.xml.model.Pixels

setTiffDataFirstC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTiffDataFirstC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setTiffDataFirstC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setTiffDataFirstC(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FirstC property of TiffData.

setTiffDataFirstC(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTiffDataFirstT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTiffDataFirstT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setTiffDataFirstT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setTiffDataFirstT(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FirstT property of TiffData.

setTiffDataFirstT(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTiffDataFirstZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTiffDataFirstZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setTiffDataFirstZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setTiffDataFirstZ(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FirstZ property of TiffData.

setTiffDataFirstZ(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTiffDataIFD(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTiffDataIFD(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setTiffDataIFD(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setTiffDataIFD(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the IFD property of TiffData.

setTiffDataIFD(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTiffDataPlaneCount(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTiffDataPlaneCount(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setTiffDataPlaneCount(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setTiffDataPlaneCount(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PlaneCount property of TiffData.

setTiffDataPlaneCount(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTIFFDecompressor(TIFFDecompressor) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Sets the TIFFDecompressor object to be used by the ImageReader to decode each image strip or tile.

setTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Changes the current tile, given the new coordinates.

setTile(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Changes the current tile, given the new indexes.

setTile(int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Changes the current tile, given the new indexes.

setTile(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Changes the current tile, given the new indexes.

setTile(int, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Changes the current tile, given the new indexes.

setTile(int, int) - Method in interface jj2000.j2k.image.ImgData

Changes the current tile, given the new indices.

setTile(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter

Changes the current tile, given the new indexes.

setTile(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Changes the current tile, given the new coordinates.

setTile(int, int) - Method in class jj2000.j2k.image.input.ImgReader

Changes the current tile, given the new coordinates.

setTile(int, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Changes the current tile, given the new indexes.

setTile(int, int) - Method in class jj2000.j2k.image.Tiler

Changes the current tile, given the new tile indexes.

setTile(int, int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Changes the current tile, given the new indexes.

setTile(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Changes the current tile, given the new indexes.

setTile(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Changes the current tile, given the new coordinates.

setTile(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Changes the current tile, given the new indices.

setTile(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Changes the current tile, given the new indexes.

setTile(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Changes the current tile, given the new indexes.

setTile(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Changes the current tile, given the new indexes.

setTileCompVal(int, int, Object) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Sets value for specified tile-component.

setTileCompVal(int, int, Object) - Method in class jj2000.j2k.ModuleSpec

Sets value for specified tile-component.

setTileDef(int, Object) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Sets default value for specified tile and specValType tag if allowed by its priority.

setTileDef(int, Object) - Method in class jj2000.j2k.ModuleSpec

Sets default value for specified tile and specValType tag if allowed by its priority.

setTileOfTileParts(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Sets the tile of each tile part in order.

setTiling(int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Override the method setTiling in the super class.

setTimeIncrement(Time) - Method in class ome.xml.model.Pixels

setTimepoint(Timestamp) - Method in class ome.xml.model.WellSample

setTimestampAnnotation(int, TimestampAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setTimestampAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTimestampAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setTimestampAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setTimestampAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of TimestampAnnotation.

setTimestampAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTimestampAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTimestampAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setTimestampAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setTimestampAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of TimestampAnnotation.

setTimestampAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTimestampAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTimestampAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setTimestampAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setTimestampAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of TimestampAnnotation.

setTimestampAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTimestampAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTimestampAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setTimestampAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setTimestampAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of TimestampAnnotation.

setTimestampAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTimestampAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setTimestampAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setTimestampAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setTimestampAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of TimestampAnnotation.

setTimestampAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTimestampAnnotationValue(Timestamp, int) - Method in class ome.xml.meta.AggregateMetadata

setTimestampAnnotationValue(Timestamp, int) - Method in class ome.xml.meta.DummyMetadata

setTimestampAnnotationValue(Timestamp, int) - Method in class ome.xml.meta.FilterMetadata

setTimestampAnnotationValue(Timestamp, int) - Method in interface ome.xml.meta.MetadataStore

Set the Value property of TimestampAnnotation.

setTimestampAnnotationValue(Timestamp, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Settings - Class in ome.xml.model

Settings() - Constructor for class ome.xml.model.Settings

Default constructor.

Settings(Element, OMEModel) - Constructor for class ome.xml.model.Settings

Constructs Settings recursively from an XML DOM tree.

Settings(Settings) - Constructor for class ome.xml.model.Settings

Copy constructor.

setTitle(String) - Method in class loci.poi.hpsf.SummaryInformation

Sets the title.

setToBlack(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

setTopBorderColor(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the color to use for the top border

setTopBorderPaletteIdx(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the palette index for the top border

setTopColGutter(short) - Method in class loci.poi.hssf.record.GutsRecord

set the size of the gutter that appears at the above the columns

setTopDown(boolean) - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

If set, the data will be written out in a top-down manner, the first scanline being written first.

setTopRow(short) - Method in class loci.poi.hssf.model.Sheet

setTopRow(short) - Method in class loci.poi.hssf.record.PaneRecord

Set the top row field for the Pane record.

setTopRow(short) - Method in class loci.poi.hssf.record.WindowTwoRecord

set the top row visible in the window

setTrans(AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setTransform(AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setTransform(AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setTransform(AffineTransform) - Method in class ome.xml.model.Shape

setTransmittance(PercentFraction) - Method in class ome.xml.model.TransmittanceRange

setTransmittanceRange(TransmittanceRange) - Method in class ome.xml.model.Filter

setTransmittanceRangeCutIn(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTransmittanceRangeCutIn(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setTransmittanceRangeCutIn(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setTransmittanceRangeCutIn(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the CutIn property of TransmittanceRange.

setTransmittanceRangeCutIn(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTransmittanceRangeCutInTolerance(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTransmittanceRangeCutInTolerance(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setTransmittanceRangeCutInTolerance(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setTransmittanceRangeCutInTolerance(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the CutInTolerance property of TransmittanceRange.

setTransmittanceRangeCutInTolerance(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTransmittanceRangeCutOut(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTransmittanceRangeCutOut(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setTransmittanceRangeCutOut(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setTransmittanceRangeCutOut(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the CutOut property of TransmittanceRange.

setTransmittanceRangeCutOut(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTransmittanceRangeCutOutTolerance(Length, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTransmittanceRangeCutOutTolerance(Length, int, int) - Method in class ome.xml.meta.DummyMetadata

setTransmittanceRangeCutOutTolerance(Length, int, int) - Method in class ome.xml.meta.FilterMetadata

setTransmittanceRangeCutOutTolerance(Length, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the CutOutTolerance property of TransmittanceRange.

setTransmittanceRangeCutOutTolerance(Length, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTransmittanceRangeTransmittance(PercentFraction, int, int) - Method in class ome.xml.meta.AggregateMetadata

setTransmittanceRangeTransmittance(PercentFraction, int, int) - Method in class ome.xml.meta.DummyMetadata

setTransmittanceRangeTransmittance(PercentFraction, int, int) - Method in class ome.xml.meta.FilterMetadata

setTransmittanceRangeTransmittance(PercentFraction, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Transmittance property of TransmittanceRange.

setTransmittanceRangeTransmittance(PercentFraction, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setTruncatedFileFlag(boolean) - Method in class loci.formats.in.DeltavisionReader

This flag indicates if the file is known to be truncated.

setTStep(int, int) - Method in class loci.plugins.in.ImporterOptions

setTuneable(Boolean) - Method in class ome.xml.model.Laser

setType(long) - Method in class loci.poi.hpsf.MutableProperty

Sets the property's type.

setType(short) - Method in class loci.poi.hssf.record.BOFRecord

type of object this marks

setType(byte) - Method in class loci.poi.hssf.record.LegendRecord

Set the type field for the Legend record.

setType(short) - Method in class loci.poi.hssf.record.StyleRecord

set the type of the style (builtin or user-defined)

setType(int) - Method in class mdbtools.dbengine.sql.Join

setType(ArcType) - Method in class ome.xml.model.Arc

setType(DetectorType) - Method in class ome.xml.model.Detector

setType(ExperimentType) - Method in class ome.xml.model.Experiment

setType(FilamentType) - Method in class ome.xml.model.Filament

setType(FilterType) - Method in class ome.xml.model.Filter

setType(LaserType) - Method in class ome.xml.model.Laser

setType(MicrobeamManipulationType) - Method in class ome.xml.model.MicrobeamManipulation

setType(MicroscopeType) - Method in class ome.xml.model.Microscope

setType(PixelType) - Method in class ome.xml.model.Pixels

setType(String) - Method in class ome.xml.model.Screen

setType(String) - Method in class ome.xml.model.Well

setTypeOffset(short) - Method in class loci.poi.hssf.usermodel.HSSFFont

set normal,super or subscript.

setUID(byte[]) - Method in class loci.poi.ddf.EscherBitmapBlip

setUid(byte[]) - Method in class loci.poi.ddf.EscherBSERecord

16 byte MD4 checksum.

setUID(byte[]) - Method in class loci.poi.ddf.EscherMetafileBlip

setUID(byte[]) - Method in class loci.poi.ddf.EscherPictBlip

setUncompressedSize(int) - Method in class loci.poi.ddf.EscherMetafileBlip

setUncompressedSize(int) - Method in class loci.poi.ddf.EscherPictBlip

setUncompressedUnicode() - Method in class loci.poi.hssf.record.UnicodeString

setUnderline(byte) - Method in class loci.poi.hssf.record.FontRecord

set the type of underlining for the font

setUnderline(byte) - Method in class loci.poi.hssf.usermodel.HSSFFont

set type of text underlining to use

setUndocumented(byte) - Method in class loci.poi.hssf.record.SeriesTextRecord

Set the undocumented field for the SeriesText record.

setUngroupFiles(boolean) - Method in class loci.plugins.in.ImporterOptions

setUnicodeFlag(boolean) - Method in class loci.poi.hssf.record.FormatRecord

set whether the string is unicode

setUnicodeString(UnicodeString) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Used internally by the HSSFCell to set the internal string value

setUnion(Union) - Method in class ome.xml.model.ROI

setUnion(Union) - Method in class ome.xml.model.Shape

setUnits(short) - Method in class loci.poi.hssf.record.UnitsRecord

Set the units field for the Units record.

setUnknown(short) - Method in class loci.poi.hssf.record.FileSharingRecord

setUnknown(boolean) - Method in class loci.poi.hssf.record.LineFormatRecord

Sets the unknown field value.

setUnpackedBinaryData(byte[], WritableRaster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Copies data into the packed array of the Raster from an array of unpacked data of the form returned by getUnpackedBinaryData().

setUnused(short) - Method in class loci.poi.hssf.record.NameRecord

sets the index number to the extern sheet (thats is what writen in documentation but as i saw , it works differently)

setUnused2(byte) - Method in class loci.poi.ddf.EscherBSERecord

setUnused3(byte) - Method in class loci.poi.ddf.EscherBSERecord

setup - Variable in class loci.formats.in.SDTInfo

setup(String, ImagePlus) - Method in class loci.plugins.LociExporter

Sets up the writer.

setup(String, ImagePlus) - Method in class loci.plugins.Slicer

setup() - Method in class loci.tests.testng.FormatReaderTest

setup() - Method in class loci.tests.testng.Jpeg2000GrindTest

setup() - Method in class ome.metakit.ColumnMap

Read the data values for the current column.

SETUP_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .set files (setup only).

setupBlock() - Method in class loci.common.CBZip2InputStream

setUpgradeCheck(boolean) - Method in class loci.plugins.in.ImporterOptions

setupLength - Variable in class loci.formats.in.SDTInfo

Length of the setup data.

setupMetadata(ColorModel, SampleModel, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Sets up the output metadata adding, removing, and overriding fields as needed.

setupNoRandPartA() - Method in class loci.common.CBZip2InputStream

setupNoRandPartB() - Method in class loci.common.CBZip2InputStream

setupNoRandPartC() - Method in class loci.common.CBZip2InputStream

setupOffs - Variable in class loci.formats.in.SDTInfo

Offset of the setup text data (system parameters, display parameters, trace parameters etc.).

setupRandPartA() - Method in class loci.common.CBZip2InputStream

setupRandPartB() - Method in class loci.common.CBZip2InputStream

setupRandPartC() - Method in class loci.common.CBZip2InputStream

setupReader() - Method in class loci.formats.in.MicromanagerReader

Initialize the TIFF reader with the first file in the current series.

setupReader() - Method in class loci.tests.testng.FormatReaderTest

Sets up the current IFormatReader.

setupService() - Method in class loci.formats.FormatReader

Initialize the OMEXMLService needed by FormatReader.setId(String)

setupService() - Method in class loci.formats.in.OMETiffReader

setupServiceAndMetadata() - Method in class loci.formats.out.OMETiffWriter

setupTiffSaver() - Method in class loci.formats.out.TiffWriter

setupWrite(int, int, int, int, int, int, int, int, double, double, double, int) - Method in interface loci.formats.services.WlzService

Sets up the service, which must have already been opened for writing.

setupWrite(int, int, int, int, int, int, int, int, double, double, double, int) - Method in class loci.formats.services.WlzServiceImpl

setUsage(byte) - Method in class loci.poi.ddf.EscherBSERecord

Defines the way this blip is used.

setUse64BitOffsets(boolean) - Method in class loci.formats.tiff.TiffParser

Sets whether or not 64-bit offsets are used for non-BigTIFF files.

setUseExcel4Colors(boolean) - Method in class loci.poi.hssf.record.DataFormatRecord

Sets the use excel 4 colors field value.

setUsePage(boolean) - Method in class loci.poi.hssf.record.PrintSetupRecord

setUsePage(boolean) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Set whether to use page start

setUsername(String) - Method in class loci.poi.hssf.record.FileSharingRecord

setUsername(String) - Method in class loci.poi.hssf.record.WriteAccessRecord

set the username for the user that created the report.

setUserName(String) - Method in class ome.xml.model.Experimenter

setUsernameLength(byte) - Method in class loci.poi.hssf.record.FileSharingRecord

setUsingPatternIds(boolean) - Method in class loci.formats.FileStitcher

Sets whether the reader is using file patterns for IDs.

setUUID(String) - Method in class ome.xml.meta.AggregateMetadata

Sets the UUID associated with this collection of metadata.

setUUID(String) - Method in class ome.xml.meta.DummyMetadata

Sets the UUID associated with this collection of metadata.

setUUID(String) - Method in class ome.xml.meta.FilterMetadata

setUUID(String) - Method in interface ome.xml.meta.MetadataStore

Set the UUID associated with this collection of metadata.

setUUID(String) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Sets the UUID associated with this collection of metadata.

setUUID(String) - Method in class ome.xml.model.BinaryOnly

setUUID(String) - Method in class ome.xml.model.OME

setUUID(UUID) - Method in class ome.xml.model.TiffData

setUUIDFileName(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setUUIDFileName(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setUUIDFileName(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setUUIDFileName(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the FileName property of UUID.

setUUIDFileName(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setUUIDValue(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setUUIDValue(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setUUIDValue(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setUUIDValue(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the text value of UUID.

setUUIDValue(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setValidBitsPerPixel(int) - Method in class loci.formats.FormatWriter

setValidBitsPerPixel(int) - Method in interface loci.formats.IFormatWriter

Sets the number of valid bits per pixel.

setValidBitsPerPixel(int) - Method in class loci.formats.ImageWriter

setValidBitsPerPixel(int) - Method in class loci.formats.WriterWrapper

setValidSettings(boolean) - Method in class loci.poi.hssf.record.PrintSetupRecord

setValidSettings(boolean) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Valid settings.

setValue(int, int, int) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Changes the value of a leaf in the tag tree.

setValue(String) - Method in class loci.formats.in.BaseZeissReader.Tag

setValue(boolean) - Method in class loci.plugins.prefs.BooleanOption

Sets the current value of the option.

setValue(double) - Method in class loci.plugins.prefs.DoubleOption

Sets the current value of the option.

setValue(String, boolean) - Method in class loci.plugins.prefs.OptionsList

Sets the value of the boolean option with the given key.

setValue(String, String) - Method in class loci.plugins.prefs.OptionsList

Sets the value of the string option with the given key.

setValue(String) - Method in class loci.plugins.prefs.StringOption

Sets the current value of the option.

setValue(double) - Method in class loci.plugins.util.RecordedImageProcessor

setValue(Object) - Method in class loci.poi.hpsf.MutableProperty

Sets the property's value.

setValue(boolean) - Method in class loci.poi.hssf.record.BoolErrRecord

set the boolean value for the cell

setValue(byte) - Method in class loci.poi.hssf.record.BoolErrRecord

set the error value for the cell

setValue(boolean) - Method in class loci.poi.hssf.record.formula.BoolPtg

setValue(short) - Method in class loci.poi.hssf.record.formula.IntPtg

setValue(double) - Method in class loci.poi.hssf.record.formula.NumberPtg

setValue(double) - Method in class loci.poi.hssf.record.FormulaRecord

set the calculated value of the formula

setValue(double) - Method in class loci.poi.hssf.record.NumberRecord

set the value for the cell

setValue(Object) - Method in class loci.poi.util.BinaryTree.Node

Optional operation that is not permitted in this implementation

setValue(int, int) - Method in class loci.poi.util.BitField

Replace the bits with new values.

setValue(Boolean) - Method in class ome.xml.model.BooleanAnnotation

setValue(String) - Method in class ome.xml.model.CommentAnnotation

setValue(Double) - Method in class ome.xml.model.DoubleAnnotation

setValue(Long) - Method in class ome.xml.model.LongAnnotation

setValue(MapPairs) - Method in class ome.xml.model.MapAnnotation

setValue(String) - Method in class ome.xml.model.TagAnnotation

setValue(String) - Method in class ome.xml.model.TermAnnotation

setValue(Timestamp) - Method in class ome.xml.model.TimestampAnnotation

setValue(String) - Method in class ome.xml.model.UUID

setValue(String) - Method in class ome.xml.model.XMLAnnotation

setValueAxisCrossing(boolean) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Sets the value axis crossing field value.

setValues(int[]) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Sets the values of the leafs to the new set of values and updates the tag tree accordingly.

setValuesDataType(short) - Method in class loci.poi.hssf.record.SeriesRecord

Set the values data type field for the Series record.

setValuesInReverse(boolean) - Method in class loci.poi.hssf.record.ValueRangeRecord

Sets the values in reverse field value.

setVar(String, Object) - Method in class loci.common.ReflectedUniverse

Deprecated.

Registers a variable in the universe.

setVar(String, boolean) - Method in class loci.common.ReflectedUniverse

Deprecated.

Registers a variable of primitive type boolean in the universe.

setVar(String, byte) - Method in class loci.common.ReflectedUniverse

Deprecated.

Registers a variable of primitive type byte in the universe.

setVar(String, char) - Method in class loci.common.ReflectedUniverse

Deprecated.

Registers a variable of primitive type char in the universe.

setVar(String, double) - Method in class loci.common.ReflectedUniverse

Deprecated.

Registers a variable of primitive type double in the universe.

setVar(String, float) - Method in class loci.common.ReflectedUniverse

Deprecated.

Registers a variable of primitive type float in the universe.

setVar(String, int) - Method in class loci.common.ReflectedUniverse

Deprecated.

Registers a variable of primitive type int in the universe.

setVar(String, long) - Method in class loci.common.ReflectedUniverse

Deprecated.

Registers a variable of primitive type long in the universe.

setVar(String, short) - Method in class loci.common.ReflectedUniverse

Deprecated.

Registers a variable of primitive type short in the universe.

setVariant(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

Sets the variant: '1' - '6'.

setVaryDisplayPattern(boolean) - Method in class loci.poi.hssf.record.ChartFormatRecord

setVCenter(boolean) - Method in class loci.poi.hssf.record.VCenterRecord

set whether to center vertically or not

setVersion(short) - Method in class loci.poi.hssf.record.BOFRecord

Version number - for BIFF8 should be 0x06

setVersionChecking(boolean) - Method in class loci.formats.Memoizer

Set whether version checking is done based upon major/minor version numbers.

setVertical(boolean) - Method in class loci.poi.hssf.record.LegendRecord

Sets the vertical field value.

setVertical(boolean) - Method in class loci.poi.hssf.record.TextRecord

Sets the vertical field value.

setVerticalAlignment(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set the vertical alignment of text in the cell

setVerticalAlignment(byte) - Method in class loci.poi.hssf.record.TextRecord

Set the vertical alignment field for the Text record.

setVerticalAlignment(short) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set the type of vertical alignment for the cell

setVerticalBorder(boolean) - Method in class loci.poi.hssf.record.DatRecord

Sets the vertical border field value.

setVerticalHold(short) - Method in class loci.poi.hssf.record.WindowOneRecord

set the vertical position of the window (in 1/20ths of a point)

setVerticallyCenter(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

determines whether the output is vertically centered on the page.

setVerticalScale(int) - Method in class loci.poi.hssf.record.PlotGrowthRecord

Set the verticalScale field for the PlotGrowth record.

setVerticalTextAlignment(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Sets the Vertical text alignment field value.

setView(Attributes) - Method in class loci.formats.in.LeicaSCNReader.Image

setVirtual(boolean) - Method in class loci.plugins.in.ImporterOptions

setVisible(boolean) - Method in class loci.formats.gui.ImageViewer

setVisible(boolean) - Method in class loci.plugins.util.DataBrowser

Overridden show method to allow us to delay initial window display.

setVisible(boolean) - Method in class loci.poi.hssf.usermodel.HSSFComment

Returns whether this comment is visible.

setVisible(Boolean) - Method in class ome.xml.model.Shape

setVoltage(ElectricPotential) - Method in class ome.xml.model.Detector

setVoltage(ElectricPotential) - Method in class ome.xml.model.DetectorSettings

setVResolution(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

setVResolution(short) - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Sets the vertical resolution.

setWavelength(Length) - Method in class ome.xml.model.Laser

setWavelength(Length) - Method in class ome.xml.model.LightSourceSettings

setWeight(short) - Method in class loci.poi.hssf.record.LineFormatRecord

Set the weight field for the LineFormat record.

setWell(int, Well) - Method in class ome.xml.model.Plate

setWell(Well) - Method in class ome.xml.model.WellSample

setWellAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellAnnotationRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of Well.

setWellAnnotationRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellColor(Color, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellColor(Color, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellColor(Color, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellColor(Color, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Color property of Well.

setWellColor(Color, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellColumn(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellColumn(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellColumn(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellColumn(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Column property of Well.

setWellColumn(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellExternalDescription(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellExternalDescription(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellExternalDescription(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellExternalDescription(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExternalDescription property of Well.

setWellExternalDescription(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellExternalIdentifier(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellExternalIdentifier(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellExternalIdentifier(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellExternalIdentifier(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ExternalIdentifier property of Well.

setWellExternalIdentifier(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellID(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellID(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellID(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellID(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of Well.

setWellID(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellOriginX(Length) - Method in class ome.xml.model.Plate

setWellOriginY(Length) - Method in class ome.xml.model.Plate

setWellReagentRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellReagentRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellReagentRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellReagentRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ReagentRef property of Well.

setWellReagentRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellRow(NonNegativeInteger, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellRow(NonNegativeInteger, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellRow(NonNegativeInteger, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellRow(NonNegativeInteger, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Row property of Well.

setWellRow(NonNegativeInteger, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellSample(int, WellSample) - Method in class ome.xml.model.Well

setWellSampleID(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellSampleID(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellSampleID(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellSampleID(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of WellSample.

setWellSampleID(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellSampleImageRef(String, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellSampleImageRef(String, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellSampleImageRef(String, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellSampleImageRef(String, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the ImageRef property of WellSample.

setWellSampleImageRef(String, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellSampleIndex(NonNegativeInteger, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellSampleIndex(NonNegativeInteger, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellSampleIndex(NonNegativeInteger, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellSampleIndex(NonNegativeInteger, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Index property of WellSample.

setWellSampleIndex(NonNegativeInteger, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellSamplePositionX(Length, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellSamplePositionX(Length, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellSamplePositionX(Length, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellSamplePositionX(Length, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PositionX property of WellSample.

setWellSamplePositionX(Length, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellSamplePositionY(Length, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellSamplePositionY(Length, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellSamplePositionY(Length, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellSamplePositionY(Length, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the PositionY property of WellSample.

setWellSamplePositionY(Length, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellSampleTimepoint(Timestamp, int, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellSampleTimepoint(Timestamp, int, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellSampleTimepoint(Timestamp, int, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellSampleTimepoint(Timestamp, int, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Timepoint property of WellSample.

setWellSampleTimepoint(Timestamp, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWellType(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setWellType(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setWellType(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setWellType(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the Type property of Well.

setWellType(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setWhere(Object) - Method in class mdbtools.dbengine.sql.Select

setWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

setWidth(int) - Method in class loci.poi.ddf.EscherBlipWMFRecord

Set the width of the metafile in EMU's (English Metric Units).

setWidth(int) - Method in class loci.poi.hssf.record.AxisParentRecord

Set the width field for the AxisParent record.

setWidth(int) - Method in class loci.poi.hssf.record.ChartFormatRecord

setWidth(int) - Method in class loci.poi.hssf.record.ChartRecord

Set the width field for the Chart record.

setWidth(int) - Method in class loci.poi.hssf.record.TextRecord

Set the width field for the Text record.

setWidth(short) - Method in class loci.poi.hssf.record.WindowOneRecord

set the width of the window

setWidth(Double) - Method in class ome.xml.model.Mask

setWidth(Double) - Method in class ome.xml.model.Rectangle

setWindowing(short) - Method in class loci.poi.hssf.record.DateWindow1904Record

sets whether or not to use 1904 date windowing (which means you'll be screwed in 2004)

setWindowless(boolean) - Method in class loci.plugins.in.ImporterOptions

setWordCount(int) - Method in class loci.poi.hpsf.SummaryInformation

Sets the word count.

setWorkbookReferences(Workbook, LabelSSTRecord) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

This must be called to setup the internal work book references whenever a RichTextString is added to a cell

setWorkingDistance(Length) - Method in class ome.xml.model.Objective

setWrapText(boolean) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether to wrap the text in the cell

setWrapText(boolean) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

set whether the text should be wrapped

setWriteCodeStreamOnly(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Sets writeCodeStreamOnly.

setWriter(ImageWriter) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Sets the value of the writer field.

setWriteSequentially(boolean) - Method in class loci.formats.FormatWriter

setWriteSequentially(boolean) - Method in interface loci.formats.IFormatWriter

Sets whether or not we know that planes will be written sequentially.

setWriteSequentially(boolean) - Method in class loci.formats.ImageWriter

setWriteSequentially(boolean) - Method in class loci.formats.WriterWrapper

setWritingSequentially(boolean) - Method in class loci.formats.tiff.TiffSaver

Sets whether or not we know that the planes will be written sequentially.

setWSBool1(byte) - Method in class loci.poi.hssf.record.WSBoolRecord

set first byte (see bit setters)

setWSBool2(byte) - Method in class loci.poi.hssf.record.WSBoolRecord

set the second byte (see bit setters)

setX(int) - Method in class loci.poi.hssf.record.AxisParentRecord

Set the x field for the AxisParent record.

setX(int) - Method in class loci.poi.hssf.record.ChartRecord

Set the x field for the Chart record.

setX(short) - Method in class loci.poi.hssf.record.PaneRecord

Set the x field for the Pane record.

setX(int) - Method in class loci.poi.hssf.record.TextRecord

Set the x field for the Text record.

setX(Double) - Method in class ome.xml.model.Ellipse

setX(Double) - Method in class ome.xml.model.Label

setX(Double) - Method in class ome.xml.model.Mask

setX(Double) - Method in class ome.xml.model.Point

setX(Double) - Method in class ome.xml.model.Rectangle

setX(Length) - Method in class ome.xml.model.StageLabel

setX1(Double) - Method in class ome.xml.model.Line

setX2(Double) - Method in class ome.xml.model.Line

setXAxisUpperLeft(int) - Method in class loci.poi.hssf.record.LegendRecord

Set the x axis upper left field for the Legend record.

setXBasis(short) - Method in class loci.poi.hssf.record.FontBasisRecord

Set the x Basis field for the FontBasis record.

setXBATChain(int) - Method in class loci.poi.poifs.storage.BATBlock

setXFIndex(short) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

setXFIndex(short) - Method in class loci.poi.hssf.record.BlankRecord

set the index of the extended format record to style this cell with

setXFIndex(short) - Method in class loci.poi.hssf.record.BoolErrRecord

set the index to the ExtendedFormat

setXFIndex(short) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

setXFIndex(short) - Method in class loci.poi.hssf.record.ColumnInfoRecord

set the columns' default format info

setXFIndex(short) - Method in class loci.poi.hssf.record.FormulaRecord

setXFIndex(short) - Method in class loci.poi.hssf.record.LabelRecord

no op!

setXFIndex(short) - Method in class loci.poi.hssf.record.LabelSSTRecord

set the index to the extended format record

setXFIndex(short) - Method in class loci.poi.hssf.record.NumberRecord

set the index to the ExtendedFormat

setXFIndex(short) - Method in class loci.poi.hssf.record.RKRecord

NO OP!

setXFIndex(short) - Method in class loci.poi.hssf.record.RowRecord

if the row is formatted then this is the index to the extended format record

setXFIndex(short) - Method in class loci.poi.hssf.record.StyleRecord

set the actual index of the style extended format record

setXfpos(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

setXFType(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

set whether the cell is a cell or style XFRecord

setXML(String) - Method in class loci.formats.gui.XMLWindow

Displays XML from the given string.

setXML(File) - Method in class loci.formats.gui.XMLWindow

Displays XML from the given file.

setXML(String) - Method in class loci.formats.tools.EditTiffG

setXML(String) - Method in class loci.plugins.util.DataBrowser

Sets XML block associated with this window.

setXMLAnnotation(int, XMLAnnotation) - Method in class ome.xml.model.StructuredAnnotations

setXMLAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.AggregateMetadata

setXMLAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.DummyMetadata

setXMLAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.FilterMetadata

setXMLAnnotationAnnotationRef(String, int, int) - Method in interface ome.xml.meta.MetadataStore

Set the AnnotationRef property of XMLAnnotation.

setXMLAnnotationAnnotationRef(String, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setXMLAnnotationAnnotator(String, int) - Method in class ome.xml.meta.AggregateMetadata

setXMLAnnotationAnnotator(String, int) - Method in class ome.xml.meta.DummyMetadata

setXMLAnnotationAnnotator(String, int) - Method in class ome.xml.meta.FilterMetadata

setXMLAnnotationAnnotator(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Annotator property of XMLAnnotation.

setXMLAnnotationAnnotator(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setXMLAnnotationDescription(String, int) - Method in class ome.xml.meta.AggregateMetadata

setXMLAnnotationDescription(String, int) - Method in class ome.xml.meta.DummyMetadata

setXMLAnnotationDescription(String, int) - Method in class ome.xml.meta.FilterMetadata

setXMLAnnotationDescription(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Description property of XMLAnnotation.

setXMLAnnotationDescription(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setXMLAnnotationID(String, int) - Method in class ome.xml.meta.AggregateMetadata

setXMLAnnotationID(String, int) - Method in class ome.xml.meta.DummyMetadata

setXMLAnnotationID(String, int) - Method in class ome.xml.meta.FilterMetadata

setXMLAnnotationID(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the ID property of XMLAnnotation.

setXMLAnnotationID(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setXMLAnnotationNamespace(String, int) - Method in class ome.xml.meta.AggregateMetadata

setXMLAnnotationNamespace(String, int) - Method in class ome.xml.meta.DummyMetadata

setXMLAnnotationNamespace(String, int) - Method in class ome.xml.meta.FilterMetadata

setXMLAnnotationNamespace(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Namespace property of XMLAnnotation.

setXMLAnnotationNamespace(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setXMLAnnotationValue(String, int) - Method in class ome.xml.meta.AggregateMetadata

setXMLAnnotationValue(String, int) - Method in class ome.xml.meta.DummyMetadata

setXMLAnnotationValue(String, int) - Method in class ome.xml.meta.FilterMetadata

setXMLAnnotationValue(String, int) - Method in interface ome.xml.meta.MetadataStore

Set the Value property of XMLAnnotation.

setXMLAnnotationValue(String, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

setXORMode(Color) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

setXORMode(Color) - Method in class loci.poi.hssf.usermodel.EscherGraphics

setXORMode(Color) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

setXPosition(int) - Method in class loci.poi.hssf.record.ChartFormatRecord

setXSize(int) - Method in class loci.poi.hssf.record.LegendRecord

Set the x size field for the Legend record.

setY(int) - Method in class loci.poi.hssf.record.AxisParentRecord

Set the y field for the AxisParent record.

setY(int) - Method in class loci.poi.hssf.record.ChartRecord

Set the y field for the Chart record.

setY(short) - Method in class loci.poi.hssf.record.PaneRecord

Set the y field for the Pane record.

setY(int) - Method in class loci.poi.hssf.record.TextRecord

Set the y field for the Text record.

setY(Double) - Method in class ome.xml.model.Ellipse

setY(Double) - Method in class ome.xml.model.Label

setY(Double) - Method in class ome.xml.model.Mask

setY(Double) - Method in class ome.xml.model.Point

setY(Double) - Method in class ome.xml.model.Rectangle

setY(Length) - Method in class ome.xml.model.StageLabel

setY1(Double) - Method in class ome.xml.model.Line

setY2(Double) - Method in class ome.xml.model.Line

setYAxisUpperLeft(int) - Method in class loci.poi.hssf.record.LegendRecord

Set the y axis upper left field for the Legend record.

setYBasis(short) - Method in class loci.poi.hssf.record.FontBasisRecord

Set the y Basis field for the FontBasis record.

setYCbCrCorrection(boolean) - Method in class loci.formats.tiff.TiffParser

Sets whether or not YCbCr color correction is allowed.

setYPosition(int) - Method in class loci.poi.hssf.record.ChartFormatRecord

setYSize(int) - Method in class loci.poi.hssf.record.LegendRecord

Set the y size field for the Legend record.

setZ(Length) - Method in class ome.xml.model.StageLabel

setZBegin(int, int) - Method in class loci.plugins.in.ImporterOptions

setZEnd(int, int) - Method in class loci.plugins.in.ImporterOptions

setZero1(int) - Method in class loci.poi.hssf.record.TickRecord

Set the zero 1 field for the Tick record.

setZero2(int) - Method in class loci.poi.hssf.record.TickRecord

Set the zero 2 field for the Tick record.

setZero3(short) - Method in class loci.poi.hssf.record.TickRecord

Set the zero 3 field for the Tick record.

setZeroHeight(boolean) - Method in class loci.poi.hssf.record.RowRecord

set whether or not to display this row with 0 height

setZeroHeight(boolean) - Method in class loci.poi.hssf.usermodel.HSSFRow

set whether or not to display this row with 0 height

setZoom(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets the zoom magnication for the sheet.

setZoom(Double) - Method in class ome.xml.model.Detector

setZoom(Double) - Method in class ome.xml.model.DetectorSettings

setZStep(int, int) - Method in class loci.plugins.in.ImporterOptions

SFEG_TAG - Static variable in class loci.formats.in.FEITiffReader

sgcod_mct - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

sgcod_nl - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

sgcod_po - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

SH - Static variable in class loci.formats.in.DicomReader

sha1(byte[], int, int) - Static method in class loci.tests.testng.TestTools

Calculate the SHA-1 of a byte array.

sha1(byte[]) - Static method in class loci.tests.testng.TestTools

Calculate the SHA-1 of a byte array.

sha1 - Variable in class ome.xml.model.External

SHADING_MUL - Static variable in class loci.formats.in.CellSensReader

SHADING_SUB - Static variable in class loci.formats.in.CellSensReader

shadow - Variable in class loci.poi.hssf.record.AreaRecord

shadow - Variable in class loci.poi.hssf.record.BarRecord

SHADOWSTYLE__COLOR - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__CRMOD - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__HIGHLIGHT - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__OFFSETX - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__OFFSETY - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__OPACITY - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__ORIGINX - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__ORIGINY - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__PERSPECTIVEX - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__PERSPECTIVEY - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__SCALEXTOX - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__SCALEXTOY - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__SCALEYTOX - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__SCALEYTOY - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__SECONDOFFSETX - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__SECONDOFFSETY - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__SHADOW - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__SHADOWOBSURED - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__TYPE - Static variable in class loci.poi.ddf.EscherProperties

SHADOWSTYLE__WEIGHT - Static variable in class loci.poi.ddf.EscherProperties

Shape - Class in ome.xml.model

Shape() - Constructor for class ome.xml.model.Shape

Default constructor.

Shape(Element, OMEModel) - Constructor for class ome.xml.model.Shape

Constructs Shape recursively from an XML DOM tree.

Shape(Shape) - Constructor for class ome.xml.model.Shape

Copy constructor.

SHAPE__BACKGROUNDSHAPE - Static variable in class loci.poi.ddf.EscherProperties

SHAPE__BLACKANDWHITESETTINGS - Static variable in class loci.poi.ddf.EscherProperties

SHAPE__CONNECTORSTYLE - Static variable in class loci.poi.ddf.EscherProperties

SHAPE__DELETEATTACHEDOBJECT - Static variable in class loci.poi.ddf.EscherProperties

SHAPE__LOCKSHAPETYPE - Static variable in class loci.poi.ddf.EscherProperties

SHAPE__MASTER - Static variable in class loci.poi.ddf.EscherProperties

SHAPE__OLEICON - Static variable in class loci.poi.ddf.EscherProperties

SHAPE__PREFERRELATIVERESIZE - Static variable in class loci.poi.ddf.EscherProperties

SHAPE__WMODEBW - Static variable in class loci.poi.ddf.EscherProperties

SHAPE__WMODEPUREBW - Static variable in class loci.poi.ddf.EscherProperties

shape_count - Variable in class loci.formats.in.ZeissTIFFHandler

shapeLinks - Variable in class ome.xml.model.Annotation

shapes - Variable in class loci.formats.in.BaseZeissReader.Layer

shapes - Variable in class loci.poi.hssf.usermodel.HSSFPatriarch

shapes - Variable in class loci.poi.hssf.usermodel.HSSFShapeGroup

SHAPES - Static variable in class ome.specification.XMLMockObjects

The shapes to handle.

shapes - Variable in class ome.xml.model.Union

shapeToObj - Variable in class loci.poi.hssf.record.EscherAggregate

Maps shape container objects to their OBJ records

shapeType - Variable in class loci.poi.hssf.usermodel.HSSFSimpleShape

sharedFormula - Variable in class loci.poi.hssf.record.FormulaRecord

SharedFormulaRecord - Class in loci.poi.hssf.record

Title: SharedFormulaRecord Description: Primarily used as an excel optimization so that multiple similar formulas are not written out too many times.

SharedFormulaRecord() - Constructor for class loci.poi.hssf.record.SharedFormulaRecord

SharedFormulaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SharedFormulaRecord

sharpen() - Method in class loci.plugins.util.RecordedImageProcessor

SHARPENING - Static variable in class loci.formats.in.NikonReader

SHARPNESS - Static variable in class loci.formats.in.CellSensReader

SHARPNESS - Static variable in class loci.formats.tiff.IFD

SHARPNESS_HARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Sharpness" tag.

SHARPNESS_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Sharpness" tag.

SHARPNESS_SOFT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Sharpness" tag.

shear(double, double) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

shear(double, double) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

Sheet - Class in loci.poi.hssf.model

Low level model implementation of a Sheet (one workbook contains many sheets) This file contains the low level binary records starting at the sheets BOF and ending with the sheets EOF.

Sheet() - Constructor for class loci.poi.hssf.model.Sheet

Creates new Sheet with no intialization --useless at this point

sheet - Variable in class loci.poi.hssf.usermodel.HSSFCell

sheet - Variable in class loci.poi.hssf.usermodel.HSSFPatriarch

sheet - Variable in class loci.poi.hssf.usermodel.HSSFRow

reference to containing Sheet

sheet - Variable in class loci.poi.hssf.usermodel.HSSFSheet

reference to the low level Sheet object

sheetName - Variable in class loci.poi.hssf.util.CellReference

SheetPropertiesRecord - Class in loci.poi.hssf.record

Describes a chart sheet properties record.

SheetPropertiesRecord() - Constructor for class loci.poi.hssf.record.SheetPropertiesRecord

SheetPropertiesRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SheetPropertiesRecord

Constructs a SheetProperties record and sets its fields appropriately.

SheetReferences - Class in loci.poi.hssf.util

Holds a collection of Sheet names and their associated reference numbers.

SheetReferences() - Constructor for class loci.poi.hssf.util.SheetReferences

sheets - Variable in class loci.poi.hssf.usermodel.HSSFWorkbook

this holds the HSSFSheet objects attached to this workbook

shiftBits - Variable in class ome.jxr.parser.DatastreamParser

shiftBreaks(PageBreakRecord, short, short, int) - Method in class loci.poi.hssf.model.Sheet

Shifts all the page breaks in the range "count" number of rows/columns

shiftColumnBreaks(short, short, short) - Method in class loci.poi.hssf.model.Sheet

Shifts the vertical page breaks for the indicated count

shiftMerged(int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Shifts the merged regions left or right depending on mode

shiftRowBreaks(int, int, int) - Method in class loci.poi.hssf.model.Sheet

Shifts the horizontal page breaks for the indicated count

shiftRows(int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Shifts rows between startRow and endRow n number of rows.

shiftRows(int, int, int, boolean, boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Shifts rows between startRow and endRow n number of rows.

SHLIB_NAME - Static variable in class jj2000.j2k.util.NativeServices

The name of the shared library containing the implementation of the native methods: 'jj2000'.

SHORT - Static variable in class loci.formats.in.CellSensReader

SHORT - Static variable in class loci.formats.in.GatanReader

SHORT_DATE_FORMAT - Static variable in class loci.formats.in.MetamorphReader

SHORT_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

shortArrayToBytes(short[]) - Method in class loci.formats.in.FluoviewReader

shortClassName(Object) - Static method in class loci.tests.testng.TestTools

Gets the class name sans package for the given object.

SHORTCUT_PLUGIN - Static variable in class loci.plugins.shortcut.ShortcutPanel

Name of this plugin, ignored when parsing the plugins list.

ShortcutPanel - Class in loci.plugins.shortcut

A plugin that displays a small window containing shortcuts to the plugins, including the Bio-Formats Importer, Bio-Formats Exporter, Stack Colorizer and Stack Slicer.

ShortcutPanel() - Constructor for class loci.plugins.shortcut.ShortcutPanel

Constructs a shortcut panel.

shortcutPanel - Variable in class loci.plugins.shortcut.ShortcutTransferHandler

Associated shortcut panel.

ShortcutTransferHandler - Class in loci.plugins.shortcut

Drag and drop transfer handler for Bio-Formats Plugins Shortcut Window.

ShortcutTransferHandler(ShortcutPanel) - Constructor for class loci.plugins.shortcut.ShortcutTransferHandler

Constructs a new shortcut panel drag and drop transfer handler.

ShortField - Class in loci.poi.util

representation of a short (16-bit) field at a fixed location within a byte array

ShortField(int) - Constructor for class loci.poi.util.ShortField

construct the ShortField with its offset into its containing byte array

ShortField(int, short) - Constructor for class loci.poi.util.ShortField

construct the ShortField with its offset into its containing byte array and initialize its value

ShortField(int, byte[]) - Constructor for class loci.poi.util.ShortField

Construct the ShortField with its offset into its containing byte array and initialize its value from its byte array

ShortField(int, short, byte[]) - Constructor for class loci.poi.util.ShortField

construct the ShortField with its offset into its containing byte array, initialize its value, and write its value to its byte array

shortHeaderFlag - Variable in class ome.jxr.parser.DatastreamParser

ShortList - Class in loci.poi.util

A List of short's; as full an implementation of the java.util.List interface as possible, with an eye toward minimal creation of objects the mimicry of List is as follows: if possible, operations designated 'optional' in the List interface are attempted wherever the List interface refers to an Object, substitute short wherever the List interface refers to a Collection or List, substitute ShortList the mimicry is not perfect, however: operations involving Iterators or ListIterators are not supported remove(Object) becomes removeValue to distinguish it from remove(short index) subList is not supported

ShortList() - Constructor for class loci.poi.util.ShortList

create an ShortList of default size

ShortList(ShortList) - Constructor for class loci.poi.util.ShortList

create a copy of an existing ShortList

ShortList(int) - Constructor for class loci.poi.util.ShortList

create an ShortList with a predefined initial size

shortLut - Variable in class loci.formats.in.DicomReader

shortRecord - Variable in class loci.poi.ddf.EscherClientAnchorRecord

shortsToBytes(short[], boolean) - Static method in class loci.common.DataTools

Translates an array of short values into an array of byte values.

shortToBytes(short, boolean) - Static method in class loci.common.DataTools

Translates the short value into an array of two bytes.

shortValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a short.

shouldUseSmallBlocks() - Method in class loci.poi.poifs.property.DocumentProperty

give method more visibility

shouldUseSmallBlocks() - Method in class loci.poi.poifs.property.Property

Based on the currently defined size, should this property use small blocks?

SHOW_ALL - Static variable in class loci.poi.hssf.record.HideObjRecord

SHOW_PLACEHOLDERS - Static variable in class loci.poi.hssf.record.HideObjRecord

showActual - Variable in class loci.poi.hssf.record.SeriesLabelsRecord

showBubbleSizes - Variable in class loci.poi.hssf.record.SeriesLabelsRecord

showBubbleSizes - Variable in class loci.poi.hssf.record.TextRecord

showCategoryLabelAsPercentage - Variable in class loci.poi.hssf.record.TextRecord

showDialog() - Method in class loci.plugins.in.ImporterDialog

showDialog() - Method in class loci.plugins.prefs.OptionsDialog

Displays the options dialog, returning the status of the operation.

showDialogs(ImportProcess) - Method in class loci.plugins.in.Importer

showError(Throwable) - Method in class loci.formats.tools.EditTiffG

showInPane(short, short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Sets desktop window pane display area, when the file is first opened in a viewer.

showKey - Variable in class loci.poi.hssf.record.TextRecord

showLabel - Variable in class loci.poi.hssf.record.SeriesLabelsRecord

showLabel - Variable in class loci.poi.hssf.record.TextRecord

showMetadataBox - Variable in class loci.plugins.in.MainDialog

showMetadataWindow() - Method in class loci.plugins.util.DataBrowser

Displays the OME-XML metadata window onscreen.

showOMEXMLBox - Variable in class loci.plugins.in.MainDialog

showOptionsWindow() - Method in class loci.plugins.util.DataBrowser

Displays the caching options window onscreen.

showPercent - Variable in class loci.poi.hssf.record.SeriesLabelsRecord

showROIs() - Method in class loci.plugins.in.ImporterOptions

showROIsBox - Variable in class loci.plugins.in.MainDialog

showSeriesKey - Variable in class loci.poi.hssf.record.DatRecord

showValue - Variable in class loci.poi.hssf.record.TextRecord

showValueAsPercentage - Variable in class loci.poi.hssf.record.TextRecord

shrink() - Method in class loci.poi.util.BinaryTree

decrement the size and note that the map has changed

shuffle(int, int[]) - Static method in class loci.formats.in.FakeReader

Fisher-Yates shuffle with constant seeds to ensure reproducibility.

shuffleAllTypesToFront(FileFilter[]) - Static method in class loci.formats.gui.GUITools

Looks for an "All supported file types" combo filter and shuffles it to the front of the list.

shutdown - Variable in class loci.formats.gui.DataConverter

SHUTTER_SPEED_VALUE - Static variable in class loci.formats.tiff.IFD

sid - Static variable in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

sid - Static variable in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

sid - Static variable in class loci.poi.hssf.record.AreaFormatRecord

sid - Static variable in class loci.poi.hssf.record.AreaRecord

sid - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

sid - Static variable in class loci.poi.hssf.record.AxisOptionsRecord

sid - Static variable in class loci.poi.hssf.record.AxisParentRecord

sid - Static variable in class loci.poi.hssf.record.AxisRecord

sid - Static variable in class loci.poi.hssf.record.AxisUsedRecord

sid - Static variable in class loci.poi.hssf.record.BackupRecord

sid - Static variable in class loci.poi.hssf.record.BarRecord

sid - Static variable in class loci.poi.hssf.record.BeginRecord

sid - Static variable in class loci.poi.hssf.record.BlankRecord

sid - Static variable in class loci.poi.hssf.record.BOFRecord

for BIFF8 files the BOF is 0x809.

sid - Static variable in class loci.poi.hssf.record.BookBoolRecord

sid - Static variable in class loci.poi.hssf.record.BoolErrRecord

sid - Static variable in class loci.poi.hssf.record.BottomMarginRecord

sid - Static variable in class loci.poi.hssf.record.BoundSheetRecord

sid - Static variable in class loci.poi.hssf.record.CalcCountRecord

sid - Static variable in class loci.poi.hssf.record.CalcModeRecord

sid - Static variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

sid - Static variable in class loci.poi.hssf.record.ChartFormatRecord

sid - Static variable in class loci.poi.hssf.record.ChartRecord

sid - Static variable in class loci.poi.hssf.record.CodepageRecord

sid - Static variable in class loci.poi.hssf.record.ColumnInfoRecord

sid - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

sid - Static variable in class loci.poi.hssf.record.ContinueRecord

sid - Static variable in class loci.poi.hssf.record.CountryRecord

sid - Static variable in class loci.poi.hssf.record.DataFormatRecord

sid - Static variable in class loci.poi.hssf.record.DateWindow1904Record

sid - Static variable in class loci.poi.hssf.record.DatRecord

sid - Static variable in class loci.poi.hssf.record.DBCellRecord

sid - Static variable in class loci.poi.hssf.record.DefaultColWidthRecord

sid - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

sid - Static variable in class loci.poi.hssf.record.DefaultRowHeightRecord

sid - Static variable in class loci.poi.hssf.record.DeltaRecord

sid - Static variable in class loci.poi.hssf.record.DimensionsRecord

sid - Static variable in class loci.poi.hssf.record.DrawingGroupRecord

sid - Static variable in class loci.poi.hssf.record.DrawingRecord

sid - Static variable in class loci.poi.hssf.record.DrawingRecordForBiffViewer

sid - Static variable in class loci.poi.hssf.record.DrawingSelectionRecord

sid - Static variable in class loci.poi.hssf.record.DSFRecord

sid - Static variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

sid - Static variable in class loci.poi.hssf.record.EndRecord

sid - Static variable in class loci.poi.hssf.record.EndSubRecord

sid - Static variable in class loci.poi.hssf.record.EOFRecord

sid - Static variable in class loci.poi.hssf.record.EscherAggregate

sid(List, int) - Static method in class loci.poi.hssf.record.EscherAggregate

Retrieve the number of shapes (including the patriarch).

sid - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

sid - Static variable in class loci.poi.hssf.record.ExternSheetRecord

sid - Static variable in class loci.poi.hssf.record.ExternSheetSubRecord

sid - Static variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord

sid - Static variable in class loci.poi.hssf.record.ExtSSTRecord

sid - Static variable in class loci.poi.hssf.record.FilePassRecord

sid - Static variable in class loci.poi.hssf.record.FileSharingRecord

sid - Static variable in class loci.poi.hssf.record.FnGroupCountRecord

sid - Static variable in class loci.poi.hssf.record.FontBasisRecord

sid - Static variable in class loci.poi.hssf.record.FontIndexRecord

sid - Static variable in class loci.poi.hssf.record.FontRecord

sid - Static variable in class loci.poi.hssf.record.FooterRecord

sid - Static variable in class loci.poi.hssf.record.FormatRecord

sid - Static variable in class loci.poi.hssf.record.formula.AddPtg

sid - Static variable in class loci.poi.hssf.record.formula.Area3DPtg

sid - Static variable in class loci.poi.hssf.record.formula.AreaAPtg

sid - Static variable in class loci.poi.hssf.record.formula.AreaErrPtg

sid - Static variable in class loci.poi.hssf.record.formula.AreaNAPtg

sid - Static variable in class loci.poi.hssf.record.formula.AreaNPtg

sid - Static variable in class loci.poi.hssf.record.formula.AreaNVPtg

sid - Static variable in class loci.poi.hssf.record.formula.AreaPtg

sid - Static variable in class loci.poi.hssf.record.formula.AreaVPtg

sid - Static variable in class loci.poi.hssf.record.formula.ArrayPtg

sid - Static variable in class loci.poi.hssf.record.formula.ArrayPtgA

sid - Static variable in class loci.poi.hssf.record.formula.ArrayPtgV

sid - Static variable in class loci.poi.hssf.record.formula.AttrPtg

sid - Static variable in class loci.poi.hssf.record.formula.BoolPtg

sid - Static variable in class loci.poi.hssf.record.formula.ConcatPtg

sid - Static variable in class loci.poi.hssf.record.formula.DeletedArea3DPtg

sid - Static variable in class loci.poi.hssf.record.formula.DeletedRef3DPtg

sid - Static variable in class loci.poi.hssf.record.formula.DividePtg

sid - Static variable in class loci.poi.hssf.record.formula.EqualPtg

sid - Static variable in class loci.poi.hssf.record.formula.ErrPtg

sid - Static variable in class loci.poi.hssf.record.formula.ExpPtg

sid - Static variable in class loci.poi.hssf.record.formula.FuncPtg

sid - Static variable in class loci.poi.hssf.record.formula.FuncVarPtg

sid - Static variable in class loci.poi.hssf.record.formula.GreaterEqualPtg

sid - Static variable in class loci.poi.hssf.record.formula.GreaterThanPtg

sid - Static variable in class loci.poi.hssf.record.formula.IntersectionPtg

sid - Static variable in class loci.poi.hssf.record.formula.IntPtg

sid - Static variable in class loci.poi.hssf.record.formula.LessEqualPtg

sid - Static variable in class loci.poi.hssf.record.formula.LessThanPtg

the sid for the less than operator as hex

sid - Static variable in class loci.poi.hssf.record.formula.MemAreaPtg

sid - Static variable in class loci.poi.hssf.record.formula.MemErrPtg

sid - Static variable in class loci.poi.hssf.record.formula.MemFuncPtg

sid - Static variable in class loci.poi.hssf.record.formula.MissingArgPtg

sid - Static variable in class loci.poi.hssf.record.formula.MultiplyPtg

sid - Static variable in class loci.poi.hssf.record.formula.NamePtg

sid - Static variable in class loci.poi.hssf.record.formula.NameXPtg

sid - Static variable in class loci.poi.hssf.record.formula.NotEqualPtg

sid - Static variable in class loci.poi.hssf.record.formula.NumberPtg

sid - Static variable in class loci.poi.hssf.record.formula.ParenthesisPtg

sid - Static variable in class loci.poi.hssf.record.formula.PercentPtg

sid - Static variable in class loci.poi.hssf.record.formula.PowerPtg

sid - Static variable in class loci.poi.hssf.record.formula.RangePtg

sid - Static variable in class loci.poi.hssf.record.formula.Ref3DPtg

sid - Static variable in class loci.poi.hssf.record.formula.RefAPtg

sid - Static variable in class loci.poi.hssf.record.formula.ReferencePtg

sid - Static variable in class loci.poi.hssf.record.formula.RefErrorPtg

sid - Static variable in class loci.poi.hssf.record.formula.RefNAPtg

sid - Static variable in class loci.poi.hssf.record.formula.RefNPtg

sid - Static variable in class loci.poi.hssf.record.formula.RefNVPtg

sid - Static variable in class loci.poi.hssf.record.formula.RefVPtg

sid - Static variable in class loci.poi.hssf.record.formula.StringPtg

sid - Static variable in class loci.poi.hssf.record.formula.SubtractPtg

sid - Static variable in class loci.poi.hssf.record.formula.UnaryMinusPtg

sid - Static variable in class loci.poi.hssf.record.formula.UnaryPlusPtg

sid - Static variable in class loci.poi.hssf.record.formula.UnionPtg

sid - Static variable in class loci.poi.hssf.record.FormulaRecord

sid - Static variable in class loci.poi.hssf.record.FrameRecord

sid - Static variable in class loci.poi.hssf.record.GridsetRecord

sid - Static variable in class loci.poi.hssf.record.GroupMarkerSubRecord

sid - Static variable in class loci.poi.hssf.record.GutsRecord

sid - Static variable in class loci.poi.hssf.record.HCenterRecord

sid - Static variable in class loci.poi.hssf.record.HeaderRecord

sid - Static variable in class loci.poi.hssf.record.HideObjRecord

sid - Static variable in class loci.poi.hssf.record.HorizontalPageBreakRecord

sid - Static variable in class loci.poi.hssf.record.IndexRecord

sid - Static variable in class loci.poi.hssf.record.InterfaceEndRecord

sid - Static variable in class loci.poi.hssf.record.InterfaceHdrRecord

sid - Static variable in class loci.poi.hssf.record.IterationRecord

sid - Static variable in class loci.poi.hssf.record.LabelRecord

sid - Static variable in class loci.poi.hssf.record.LabelSSTRecord

sid - Static variable in class loci.poi.hssf.record.LeftMarginRecord

sid - Static variable in class loci.poi.hssf.record.LegendRecord

sid - Static variable in class loci.poi.hssf.record.LineFormatRecord

sid - Static variable in class loci.poi.hssf.record.LinkedDataRecord

sid - Static variable in class loci.poi.hssf.record.MergeCellsRecord

sid - Static variable in class loci.poi.hssf.record.MMSRecord

sid - Static variable in class loci.poi.hssf.record.MulBlankRecord

sid - Static variable in class loci.poi.hssf.record.MulRKRecord

sid - Static variable in class loci.poi.hssf.record.NameRecord

sid - Static variable in class loci.poi.hssf.record.NoteRecord

sid - Static variable in class loci.poi.hssf.record.NoteStructureSubRecord

sid - Static variable in class loci.poi.hssf.record.NumberFormatIndexRecord

sid - Static variable in class loci.poi.hssf.record.NumberRecord

sid - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

sid - Static variable in class loci.poi.hssf.record.ObjectProtectRecord

sid - Static variable in class loci.poi.hssf.record.ObjRecord

sid - Variable in class loci.poi.hssf.record.PageBreakRecord

sid - Static variable in class loci.poi.hssf.record.PaletteRecord

sid - Static variable in class loci.poi.hssf.record.PaneRecord

sid - Static variable in class loci.poi.hssf.record.PasswordRecord

sid - Static variable in class loci.poi.hssf.record.PasswordRev4Record

sid - Static variable in class loci.poi.hssf.record.PlotAreaRecord

sid - Static variable in class loci.poi.hssf.record.PlotGrowthRecord

sid - Static variable in class loci.poi.hssf.record.PrecisionRecord

sid - Static variable in class loci.poi.hssf.record.PrintGridlinesRecord

sid - Static variable in class loci.poi.hssf.record.PrintHeadersRecord

sid - Static variable in class loci.poi.hssf.record.PrintSetupRecord

sid - Static variable in class loci.poi.hssf.record.ProtectionRev4Record

sid - Static variable in class loci.poi.hssf.record.ProtectRecord

sid - Static variable in class loci.poi.hssf.record.RecalcIdRecord

sid - Static variable in class loci.poi.hssf.record.RefModeRecord

sid - Static variable in class loci.poi.hssf.record.RefreshAllRecord

sid - Static variable in class loci.poi.hssf.record.RightMarginRecord

sid - Static variable in class loci.poi.hssf.record.RKRecord

sid - Static variable in class loci.poi.hssf.record.RowRecord

sid - Static variable in class loci.poi.hssf.record.SaveRecalcRecord

sid - Static variable in class loci.poi.hssf.record.ScenarioProtectRecord

sid - Static variable in class loci.poi.hssf.record.SCLRecord

sid - Static variable in class loci.poi.hssf.record.SelectionRecord

sid - Static variable in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

sid - Static variable in class loci.poi.hssf.record.SeriesIndexRecord

sid - Static variable in class loci.poi.hssf.record.SeriesLabelsRecord

sid - Static variable in class loci.poi.hssf.record.SeriesListRecord

sid - Static variable in class loci.poi.hssf.record.SeriesRecord

sid - Static variable in class loci.poi.hssf.record.SeriesTextRecord

sid - Static variable in class loci.poi.hssf.record.SeriesToChartGroupRecord

sid - Static variable in class loci.poi.hssf.record.SharedFormulaRecord

sid - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

sid - Static variable in class loci.poi.hssf.record.SSTRecord

sid - Static variable in class loci.poi.hssf.record.StringRecord

sid - Static variable in class loci.poi.hssf.record.StyleRecord

sid - Static variable in class loci.poi.hssf.record.SupBookRecord

sid - Static variable in class loci.poi.hssf.record.TabIdRecord

sid - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

sid - Static variable in class loci.poi.hssf.record.TextRecord

sid - Static variable in class loci.poi.hssf.record.TickRecord

sid - Static variable in class loci.poi.hssf.record.TopMarginRecord

sid - Static variable in class loci.poi.hssf.record.UnicodeString

sid - Static variable in class loci.poi.hssf.record.UnitsRecord

sid - Variable in class loci.poi.hssf.record.UnknownRecord

sid - Static variable in class loci.poi.hssf.record.UseSelFSRecord

sid - Static variable in class loci.poi.hssf.record.ValueRangeRecord

sid - Static variable in class loci.poi.hssf.record.VCenterRecord

sid - Static variable in class loci.poi.hssf.record.VerticalPageBreakRecord

sid - Static variable in class loci.poi.hssf.record.WindowOneRecord

sid - Static variable in class loci.poi.hssf.record.WindowProtectRecord

sid - Static variable in class loci.poi.hssf.record.WindowTwoRecord

sid - Static variable in class loci.poi.hssf.record.WriteAccessRecord

sid - Static variable in class loci.poi.hssf.record.WriteProtectRecord

sid - Static variable in class loci.poi.hssf.record.WSBoolRecord

sids - Variable in class loci.poi.hssf.eventmodel.ListenerWrapper

sidscache - Static variable in class loci.poi.hssf.eventmodel.EventRecordFactory

cache of the return of getAllKnownSids so that we don't have to expensively get them every time.

SIFReader - Class in loci.formats.in

SIFReader is the file format reader for Andor SIF files.

SIFReader() - Constructor for class loci.formats.in.SIFReader

Constructs a new SIF reader.

SIG_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The mask to isolate the significance bits for row 1 and 2 of the state array.

SIG_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The mask to isolate the significance bits for row 1 and 2 of the state array.

SIGNAL_OUTPUT - Static variable in class loci.formats.in.CellSensReader

SIGNATURE_SIZE - Static variable in class loci.formats.in.VolocityReader

SignatureBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Signature Box of JPEG JP2 file format.

SignatureBox() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

Constructs a SignatureBox.

SignatureBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

Constructs a SignatureBox based on the provided org.w3c.dom.Node.

SignatureBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

Constructs a SignatureBox based on the provided byte array.

signed - Variable in class loci.formats.codec.CodecOptions

Indicates whether or not the pixel data is signed.

signed - Variable in class loci.formats.in.GatanReader

SignedByteBuffer - Class in loci.formats.gui

DataBuffer that stores signed bytes.

SignedByteBuffer(byte[], int) - Constructor for class loci.formats.gui.SignedByteBuffer

Construct a new buffer of signed bytes using the given byte array.

SignedByteBuffer(byte[][], int) - Constructor for class loci.formats.gui.SignedByteBuffer

Construct a new buffer of signed bytes using the given 2D byte array.

SignedColorModel - Class in loci.formats.gui

ColorModel that handles 8, 16 and 32 bits per channel signed data.

SignedColorModel(int, int, int) - Constructor for class loci.formats.gui.SignedColorModel

SignedShortBuffer - Class in loci.formats.gui

DataBuffer that stores signed shorts.

SignedShortBuffer(int) - Constructor for class loci.formats.gui.SignedShortBuffer

SignedShortBuffer(int, int) - Constructor for class loci.formats.gui.SignedShortBuffer

SignedShortBuffer(short[], int) - Constructor for class loci.formats.gui.SignedShortBuffer

SignedShortBuffer(short[], int, int) - Constructor for class loci.formats.gui.SignedShortBuffer

SignedShortBuffer(short[][], int) - Constructor for class loci.formats.gui.SignedShortBuffer

SignedShortBuffer(short[][], int, int[]) - Constructor for class loci.formats.gui.SignedShortBuffer

significantBits - Variable in class ome.xml.model.Pixels

sigProgPass(DataBlk, MQDecoder, int, int[], int[], boolean) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Performs the significance propagation pass on the specified data and bit-plane.

sigProgPass(CBlkWTData, MQCoder, boolean, int, int[], int[], int[], int[], int[], int[], int, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Performs the significance propagation pass on the specified data and bit-plane.

SimpleCMYKColorSpace - Class in com.sun.media.imageioimpl.common

Singleton class representing a simple, mathematically defined CMYK color space.

SimpleCMYKColorSpace() - Constructor for class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

simpleCreateBlocks(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

create the BATBlocks

SimpleFilledShape - Class in loci.poi.hssf.model

SimpleFilledShape(HSSFSimpleShape, int) - Constructor for class loci.poi.hssf.model.SimpleFilledShape

Creates the low evel records for an oval.

SimplePCITiffReader - Class in loci.formats.in

SimplePCITiffReader is the file format reader for TIFF files produced by SimplePCI software.

SimplePCITiffReader() - Constructor for class loci.formats.in.SimplePCITiffReader

SimpleRenderedImage - Class in com.sun.media.imageioimpl.common

SimpleRenderedImage() - Constructor for class com.sun.media.imageioimpl.common.SimpleRenderedImage

SimpleSort - Class in mdbtools.dbengine.tasks

Sort the given data by the given columns

SimpleSort(Task, OrderBy[], int[]) - Constructor for class mdbtools.dbengine.tasks.SimpleSort

sInf - Variable in class loci.poi.POIDocument

Holds metadata on our document

SINGLE_TIFF_PATH_BUILDER - Static variable in class loci.formats.in.CellVoyagerReader

singleInstance(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

singleTiffMode - Variable in class loci.formats.in.PrairieReader

Flag indicating that the reader is operating in a mode where grouping of files is disallowed.

SingleTileRenderedImage - Class in com.sun.media.imageioimpl.common

A simple class that provides RenderedImage functionality given a Raster and a ColorModel.

SingleTileRenderedImage(Raster, ColorModel) - Constructor for class com.sun.media.imageioimpl.common.SingleTileRenderedImage

Constructs a SingleTileRenderedImage based on a Raster and a ColorModel.

SingularityTest - Class in loci.tests

A class for testing the accuracy of IFormatReader.isSingleFile(String).

SingularityTest() - Constructor for class loci.tests.SingularityTest

SIS_INI_TAG - Static variable in class loci.formats.in.SISReader

SIS_TAG - Static variable in class loci.formats.in.SISReader

SIS_TAG_2 - Static variable in class loci.formats.in.SISReader

SISReader - Class in loci.formats.in

SISReader is the file format reader for Olympus Soft Imaging Solutions TIFF files.

SISReader() - Constructor for class loci.formats.in.SISReader

SITE - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

site - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate

site - Variable in class loci.formats.in.ZeissTIFFReader.Plane

siz - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the SIZ marker segment found in main header

SIZ - Static variable in interface jj2000.j2k.codestream.Markers

SIZ marker (Image and tile size): 0xFF51

SIZ_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for SIZ marker segment found

size() - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Returns the number of valid bytes in the output buffer (count class variable).

size - Variable in class loci.formats.codec.ByteVector

size() - Method in class loci.formats.codec.ByteVector

size - Variable in class loci.formats.in.AVIReader

size - Variable in class loci.formats.in.FV1000Reader

size - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry

size - Variable in class loci.formats.tiff.OnDemandLongArray

size() - Method in class loci.formats.tiff.OnDemandLongArray

size - Variable in class loci.plugins.in.ThumbLoader.SeriesInfo

size - Variable in class loci.poi.hpsf.Section

size() - Method in class loci.poi.hssf.model.WorkbookRecordList

size - Variable in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

SIZE - Static variable in class loci.poi.hssf.record.formula.AddPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.Area3DPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.AreaPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.AttrPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.BoolPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.ConcatPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.DividePtg

SIZE - Static variable in class loci.poi.hssf.record.formula.EqualPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.ErrPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.ExpPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.FuncPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.FuncVarPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.GreaterEqualPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.GreaterThanPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.IntPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.LessEqualPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.LessThanPtg

the size of the Ptg

SIZE - Static variable in class loci.poi.hssf.record.formula.MemAreaPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.MissingArgPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.MultiplyPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.NamePtg

SIZE - Static variable in class loci.poi.hssf.record.formula.NameXPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.NotEqualPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.NumberPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.ParenthesisPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.PercentPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.PowerPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.Ref3DPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.ReferencePtg

SIZE - Static variable in class loci.poi.hssf.record.formula.RefErrorPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.StringPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.SubtractPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.UnaryMinusPtg

SIZE - Static variable in class loci.poi.hssf.record.formula.UnaryPlusPtg

size - Variable in class loci.poi.hssf.record.formula.UnknownPtg

size - Variable in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

size - Variable in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

size() - Method in class loci.poi.poifs.storage.DocumentBlock

Get the number of bytes read for this block

size() - Method in class loci.poi.util.BinaryTree

Returns the number of key-value mappings in this map.

size() - Method in class loci.poi.util.DoubleList

Returns the number of elements in this list.

size() - Method in class loci.poi.util.IntList

Returns the number of elements in this list.

size() - Method in class loci.poi.util.IntMapper

size() - Method in class loci.poi.util.ShortList

Returns the number of elements in this list.

SIZE - Static variable in class loci.tests.IOTester

size - Variable in enum ome.jxr.ifd.IFDEntryType

size - Variable in class ome.xml.model.BinaryFile

SIZE_C - Static variable in class loci.tests.testng.Configuration

SIZE_C - Static variable in class loci.tests.testng.Jpeg2000GrindTest

SIZE_C - Static variable in class ome.specification.XMLMockObjects

The default number of channels.

SIZE_C_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the SizeC attribute.

SIZE_T - Static variable in class loci.tests.testng.Configuration

SIZE_T - Static variable in class loci.tests.testng.Jpeg2000GrindTest

SIZE_T - Static variable in class ome.specification.XMLMockObjects

The default number of time-points.

SIZE_T_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the SizeT attribute.

SIZE_X - Static variable in class loci.tests.testng.Configuration

SIZE_X - Static variable in class loci.tests.testng.Jpeg2000GrindTest

SIZE_X - Static variable in class ome.specification.XMLMockObjects

The default number of pixels along the X-axis.

SIZE_X_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the SizeX attribute.

SIZE_Y - Static variable in class loci.tests.testng.Configuration

SIZE_Y - Static variable in class loci.tests.testng.Jpeg2000GrindTest

SIZE_Y - Static variable in class ome.specification.XMLMockObjects

The default number of pixels along the Y-axis.

SIZE_Y_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the SizeY attribute.

SIZE_Z - Static variable in class loci.tests.testng.Configuration

SIZE_Z - Static variable in class loci.tests.testng.Jpeg2000GrindTest

SIZE_Z - Static variable in class ome.specification.XMLMockObjects

The default number of z-sections.

SIZE_Z_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the SizeZ attribute.

sizeAsProduct(int...) - Static method in class loci.common.DataTools

sizeAsProduct(long...) - Static method in class loci.common.DataTools

sizeC - Variable in class loci.formats.CoreMetadata

Number of channels.

sizeC - Variable in class loci.formats.FileStitcher

Dimensional axis lengths per file.

sizeC - Variable in class loci.formats.gui.ImageViewer

sizeC - Variable in class loci.formats.in.LeicaSCNReader.Pixels

sizeC - Variable in class loci.tests.testng.OpenBytesPerformanceTest

sizeC - Variable in class ome.xml.model.Pixels

sizeCsub - Variable in class loci.formats.tools.MakeTestOmeTiff

sizeIncludesHeaderSize - Variable in class loci.poi.ddf.EscherArrayProperty

Normally, the size recorded in the simple data (for the complex data) includes the size of the header.

sizeOfBinDataList() - Method in class ome.xml.model.Mask

sizeOfBinDataList() - Method in class ome.xml.model.Pixels

sizeOfBooleanAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfChannelList() - Method in class ome.xml.model.Pixels

sizeOfCommentAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfDatasetList() - Method in class ome.xml.model.OME

sizeOfDetectorList() - Method in class ome.xml.model.Instrument

sizeOfDichroicList() - Method in class ome.xml.model.Instrument

sizeOfDoubleAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfExperimenterGroupList() - Method in class ome.xml.model.OME

sizeOfExperimenterList() - Method in class ome.xml.model.OME

sizeOfExperimentList() - Method in class ome.xml.model.OME

sizeOfFileAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfFilterList() - Method in class ome.xml.model.Instrument

sizeOfFilterSetList() - Method in class ome.xml.model.Instrument

sizeOfImageList() - Method in class ome.xml.model.OME

sizeOfInstrumentList() - Method in class ome.xml.model.OME

sizeOfLightSourceList() - Method in class ome.xml.model.Instrument

sizeOfLightSourceSettingsList() - Method in class ome.xml.model.MicrobeamManipulation

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Annotation

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Channel

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Dataset

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Detector

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Dichroic

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Experimenter

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.ExperimenterGroup

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Filter

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Image

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Instrument

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.LightPath

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.LightSource

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Objective

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Plane

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Plate

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.PlateAcquisition

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Project

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Reagent

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.ROI

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Screen

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Shape

sizeOfLinkedAnnotationList() - Method in class ome.xml.model.Well

sizeOfLinkedChannelList() - Method in class ome.xml.model.Annotation

sizeOfLinkedChannelList() - Method in class ome.xml.model.FilterSet

sizeOfLinkedDatasetList() - Method in class ome.xml.model.Annotation

sizeOfLinkedDatasetList() - Method in class ome.xml.model.Experimenter

sizeOfLinkedDatasetList() - Method in class ome.xml.model.ExperimenterGroup

sizeOfLinkedDatasetList() - Method in class ome.xml.model.Image

sizeOfLinkedDatasetList() - Method in class ome.xml.model.Project

sizeOfLinkedDetectorList() - Method in class ome.xml.model.Annotation

sizeOfLinkedDichroicList() - Method in class ome.xml.model.Annotation

sizeOfLinkedEmissionFilterList() - Method in class ome.xml.model.FilterSet

sizeOfLinkedEmissionFilterList() - Method in class ome.xml.model.LightPath

sizeOfLinkedExcitationFilterList() - Method in class ome.xml.model.FilterSet

sizeOfLinkedExcitationFilterList() - Method in class ome.xml.model.LightPath

sizeOfLinkedExperimenterGroupList() - Method in class ome.xml.model.Annotation

sizeOfLinkedExperimenterGroupList() - Method in class ome.xml.model.Experimenter

sizeOfLinkedExperimenterGroupList() - Method in class ome.xml.model.Leader

sizeOfLinkedExperimenterList() - Method in class ome.xml.model.Annotation

sizeOfLinkedExperimenterList() - Method in class ome.xml.model.ExperimenterGroup

sizeOfLinkedExperimentList() - Method in class ome.xml.model.Experimenter

sizeOfLinkedFilterList() - Method in class ome.xml.model.Annotation

sizeOfLinkedFilterSetEmissionFilterList() - Method in class ome.xml.model.Filter

sizeOfLinkedFilterSetExcitationFilterList() - Method in class ome.xml.model.Filter

sizeOfLinkedFilterSetList() - Method in class ome.xml.model.Dichroic

sizeOfLinkedImageList() - Method in class ome.xml.model.Annotation

sizeOfLinkedImageList() - Method in class ome.xml.model.Dataset

sizeOfLinkedImageList() - Method in class ome.xml.model.Experiment

sizeOfLinkedImageList() - Method in class ome.xml.model.Experimenter

sizeOfLinkedImageList() - Method in class ome.xml.model.ExperimenterGroup

sizeOfLinkedImageList() - Method in class ome.xml.model.Instrument

sizeOfLinkedImageList() - Method in class ome.xml.model.MicrobeamManipulation

sizeOfLinkedImageList() - Method in class ome.xml.model.ROI

sizeOfLinkedInstrumentList() - Method in class ome.xml.model.Annotation

sizeOfLinkedLaserList() - Method in class ome.xml.model.Pump

sizeOfLinkedLeaderList() - Method in class ome.xml.model.ExperimenterGroup

sizeOfLinkedLightPathEmissionFilterList() - Method in class ome.xml.model.Filter

sizeOfLinkedLightPathExcitationFilterList() - Method in class ome.xml.model.Filter

sizeOfLinkedLightPathList() - Method in class ome.xml.model.Annotation

sizeOfLinkedLightPathList() - Method in class ome.xml.model.Dichroic

sizeOfLinkedLightSourceList() - Method in class ome.xml.model.Annotation

sizeOfLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Experimenter

sizeOfLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Image

sizeOfLinkedMicrobeamManipulationList() - Method in class ome.xml.model.ROI

sizeOfLinkedObjectiveList() - Method in class ome.xml.model.Annotation

sizeOfLinkedPlaneList() - Method in class ome.xml.model.Annotation

sizeOfLinkedPlateAcquisitionList() - Method in class ome.xml.model.Annotation

sizeOfLinkedPlateAcquisitionList() - Method in class ome.xml.model.WellSample

sizeOfLinkedPlateList() - Method in class ome.xml.model.Annotation

sizeOfLinkedPlateList() - Method in class ome.xml.model.Screen

sizeOfLinkedProjectList() - Method in class ome.xml.model.Annotation

sizeOfLinkedProjectList() - Method in class ome.xml.model.Dataset

sizeOfLinkedProjectList() - Method in class ome.xml.model.Experimenter

sizeOfLinkedProjectList() - Method in class ome.xml.model.ExperimenterGroup

sizeOfLinkedReagentList() - Method in class ome.xml.model.Annotation

sizeOfLinkedROIList() - Method in class ome.xml.model.Annotation

sizeOfLinkedROIList() - Method in class ome.xml.model.Image

sizeOfLinkedROIList() - Method in class ome.xml.model.MicrobeamManipulation

sizeOfLinkedScreenList() - Method in class ome.xml.model.Annotation

sizeOfLinkedScreenList() - Method in class ome.xml.model.Plate

sizeOfLinkedShapeList() - Method in class ome.xml.model.Annotation

sizeOfLinkedWellList() - Method in class ome.xml.model.Annotation

sizeOfLinkedWellList() - Method in class ome.xml.model.Reagent

sizeOfLinkedWellSampleList() - Method in class ome.xml.model.Image

sizeOfLinkedWellSampleList() - Method in class ome.xml.model.PlateAcquisition

sizeOfListAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfLongAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfMapAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfMicrobeamManipulationList() - Method in class ome.xml.model.Experiment

sizeOfObjectiveList() - Method in class ome.xml.model.Instrument

sizeOfPlaneList() - Method in class ome.xml.model.Pixels

sizeOfPlateAcquisitionList() - Method in class ome.xml.model.Plate

sizeOfPlateList() - Method in class ome.xml.model.OME

sizeOfProjectList() - Method in class ome.xml.model.OME

sizeOfReagentList() - Method in class ome.xml.model.Screen

sizeOfROIList() - Method in class ome.xml.model.OME

sizeOfScreenList() - Method in class ome.xml.model.OME

sizeOfShapeList() - Method in class ome.xml.model.Union

sizeOfTagAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfTermAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfTiffDataList() - Method in class ome.xml.model.Pixels

sizeOfTimestampAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeOfType - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

sizeOfWellList() - Method in class ome.xml.model.Plate

sizeOfWellSampleList() - Method in class ome.xml.model.Well

sizeOfXMLAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

sizeR - Variable in class loci.formats.in.LeicaSCNReader.Pixels

sizeT - Variable in class loci.formats.CoreMetadata

Number of timepoints.

sizeT - Variable in class loci.formats.FileStitcher

Dimensional axis lengths per file.

sizeT - Variable in class loci.formats.gui.ImageViewer

sizeT - Variable in class loci.tests.testng.OpenBytesPerformanceTest

sizeT - Variable in class ome.xml.model.Pixels

sizeTsub - Variable in class loci.formats.tools.MakeTestOmeTiff

sizeX - Variable in class loci.formats.CoreMetadata

Width (in pixels) of images in this series.

sizeX - Variable in class loci.formats.in.FEITiffReader

sizeX - Variable in class loci.formats.in.LeicaSCNReader.Dimension

sizeX - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection

sizeX - Variable in class loci.formats.in.LeicaSCNReader.Pixels

sizeX - Variable in class loci.formats.in.MetamorphReader

sizeX - Variable in class loci.formats.in.TextReader

Image width.

sizeX - Variable in class loci.tests.testng.OpenBytesPerformanceTest

sizeX - Variable in class ome.xml.model.Pixels

sizeY - Variable in class loci.formats.CoreMetadata

Height (in pixels) of images in this series.

sizeY - Variable in class loci.formats.in.FEITiffReader

sizeY - Variable in class loci.formats.in.LeicaSCNReader.Dimension

sizeY - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection

sizeY - Variable in class loci.formats.in.LeicaSCNReader.Pixels

sizeY - Variable in class loci.formats.in.MetamorphReader

sizeY - Variable in class loci.formats.in.TextReader

Image height.

sizeY - Variable in class loci.tests.testng.OpenBytesPerformanceTest

sizeY - Variable in class ome.xml.model.Pixels

sizeZ - Variable in class loci.formats.CoreMetadata

Number of Z sections.

sizeZ - Variable in class loci.formats.FileStitcher

Dimensional axis lengths per file.

sizeZ - Variable in class loci.formats.gui.ImageViewer

sizeZ - Variable in class loci.formats.in.LeicaSCNReader.Pixels

sizeZ - Variable in class loci.formats.in.NDPIReader

sizeZ - Variable in class loci.tests.testng.OpenBytesPerformanceTest

sizeZ - Variable in class ome.xml.model.Pixels

sizeZsub - Variable in class loci.formats.tools.MakeTestOmeTiff

skip(long) - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

skip(long) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

skip(long) - Method in class loci.common.URLHandle

Skip over the given number of bytes.

skip(InputStream, long) - Method in class loci.formats.in.LiFlimReader

skip(long) - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Skips over and discards n bytes of data from this input stream.

skip(long) - Method in class loci.poi.util.BlockingInputStream

skip - Variable in class loci.tests.testng.FormatReaderTest

skip - Variable in class loci.tests.testng.FormatWriterTest

SKIP_MESSAGE - Static variable in class loci.tests.testng.FormatReaderTest

Message to give for why a test was skipped.

SKIP_MESSAGE - Static variable in class loci.tests.testng.FormatWriterTest

Message to give for why a test was skipped.

skipBits(long) - Method in class loci.common.RandomAccessInputStream

Skips a number of bits in the BitBuffer.

skipBits(long) - Method in class loci.formats.codec.BitBuffer

Deprecated.

Skips a number of bits in the BitBuffer.

skipBlocks() - Method in class loci.formats.in.GIFReader

skipBytes(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

skipBytes(long) - Method in class com.sun.media.imageio.stream.RawImageInputStream

skipBytes(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

skipBytes(int) - Method in interface jj2000.j2k.io.BinaryDataInput

Skips n bytes from the input.

skipBytes(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Skips n bytes from the input.

skipBytes(int) - Method in class jj2000.j2k.util.ISRandomAccessIO

Skips 'n' bytes from the input.

skipBytes(int) - Method in class loci.common.ByteArrayHandle

skipBytes(int) - Method in class loci.common.FileHandle

skipBytes(int) - Method in class loci.common.NIOFileHandle

skipBytes(int) - Method in class loci.common.NIOInputStream

Skip n bytes within the stream.

skipBytes(int) - Method in class loci.common.RandomAccessInputStream

Skip n bytes within the stream.

skipBytes(int) - Method in class loci.common.RandomAccessOutputStream

Advances the current offset by the given number of bytes.

skipBytes(int) - Method in class loci.common.StreamHandle

skipComment() - Method in class loci.formats.tools.AmiraParameters

skipCommentAndWhiteSpace() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Skips any line in the header starting with '#' and any space, tab, line feed or carriage return.

skipData() - Method in class loci.formats.in.ZeissCZIReader.Metadata

skipFiles - Static variable in class loci.tests.testng.FormatReaderTest

List of files to skip.

skipFiles - Static variable in class loci.tests.testng.FormatWriterTest

List of files to skip.

skipInteger(ImageInputStream, int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

skipLoad - Variable in class loci.formats.Memoizer

skipMSBP - Variable in class jj2000.j2k.entropy.CodedCBlk

The number of skipped most significant bit-planes.

skipPadding() - Method in class loci.formats.in.GatanReader

skipSave - Variable in class loci.formats.Memoizer

skipTagBlock() - Method in class loci.formats.in.ImspectorReader

Skip an unknown tag.

skipTags(int) - Method in class loci.formats.in.ImspectorReader

Skip a block of unknown string values.

SkipWhite() - Method in class loci.poi.hssf.model.FormulaParser

Skip Over Leading White Space

skipWhiteSpace() - Method in class loci.formats.in.AmiraReader.ASCII

skipWhiteSpace() - Method in class loci.formats.tools.AmiraParameters

SL - Static variable in class loci.formats.in.DicomReader

SLANTED_DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

slashContinues - Variable in class loci.common.IniParser

SLD_MAGIC_BYTES_1_0 - Static variable in class loci.formats.in.SlideBook6Reader

SLD_MAGIC_BYTES_1_0 - Static variable in class loci.formats.in.SlidebookReader

SLD_MAGIC_BYTES_1_1 - Static variable in class loci.formats.in.SlideBook6Reader

SLD_MAGIC_BYTES_1_1 - Static variable in class loci.formats.in.SlidebookReader

SLD_MAGIC_BYTES_1_2 - Static variable in class loci.formats.in.SlideBook6Reader

SLD_MAGIC_BYTES_1_2 - Static variable in class loci.formats.in.SlidebookReader

SLD_MAGIC_BYTES_2_0 - Static variable in class loci.formats.in.SlideBook6Reader

SLD_MAGIC_BYTES_2_0 - Static variable in class loci.formats.in.SlidebookReader

SLD_MAGIC_BYTES_2_1 - Static variable in class loci.formats.in.SlideBook6Reader

SLD_MAGIC_BYTES_2_1 - Static variable in class loci.formats.in.SlidebookReader

SLD_MAGIC_BYTES_3 - Static variable in class loci.formats.in.SlideBook6Reader

SLD_MAGIC_BYTES_3 - Static variable in class loci.formats.in.SlidebookReader

sleep(long) - Method in class loci.plugins.prefs.OptionsDialog

Blocks the current thread for the specified number of milliseconds.

SLICE_SPACING - Static variable in class loci.formats.in.DicomReader

Slicer - Class in loci.plugins

A plugin for splitting an image stack into separate channels, focal planes and/or time points.

Slicer() - Constructor for class loci.plugins.Slicer

slices - Variable in class loci.formats.in.ZeissTIFFReader

sliceSpace - Variable in class loci.formats.in.PerkinElmerReader

sliceThickness - Variable in class loci.formats.in.MicromanagerReader.Position

sliceThickness - Variable in class loci.formats.in.NiftiReader

SLIDE_INFO - Static variable in class loci.formats.in.CellSensReader

SLIDE_NAME - Static variable in class loci.formats.in.CellSensReader

SLIDE_PREPARATION - Static variable in class loci.formats.in.CellSensReader

SLIDE_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

SLIDE_SPECIMEN - Static variable in class loci.formats.in.CellSensReader

SLIDE_STAINING - Static variable in class loci.formats.in.CellSensReader

SLIDE_TISSUE - Static variable in class loci.formats.in.CellSensReader

SlideBook6Reader - Class in loci.formats.in

SlideBook6Reader is a file format reader for 3i SlideBook SLD files that uses the SlideBook SBReadFile SDK via the (Windows only) dlls: SBReadFile.dll and SlideBook6Reader.dll

SlideBook6Reader() - Constructor for class loci.formats.in.SlideBook6Reader

SLIDEBOOK_MAGIC_STRING - Static variable in class loci.formats.in.SlidebookTiffReader

SlidebookReader - Class in loci.formats.in

SlidebookReader is the file format reader for 3I Slidebook files.

SlidebookReader() - Constructor for class loci.formats.in.SlidebookReader

Constructs a new Slidebook reader.

SlidebookTiffReader - Class in loci.formats.in

SlidebookTiffReader() - Constructor for class loci.formats.in.SlidebookTiffReader

sliderName - Variable in class loci.formats.in.FlexReader.FlexHandler

sliderPanel - Variable in class loci.formats.gui.ImageViewer

sm - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

smallBlocks - Variable in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

SmallBlockTableReader - Class in loci.poi.poifs.storage

This class implements reading the small document block list from an existing file

SmallBlockTableReader() - Constructor for class loci.poi.poifs.storage.SmallBlockTableReader

SmallBlockTableWriter - Class in loci.poi.poifs.storage

This class implements storage for writing the small blocks used by small documents.

SmallBlockTableWriter(List, RootProperty) - Constructor for class loci.poi.poifs.storage.SmallBlockTableWriter

Creates new SmallBlockTable

SmallDocumentBlock - Class in loci.poi.poifs.storage

Storage for documents that are too small to use regular DocumentBlocks for their data

SmallDocumentBlock(byte[], int, int) - Constructor for class loci.poi.poifs.storage.SmallDocumentBlock

SmallDocumentBlock(int) - Constructor for class loci.poi.poifs.storage.SmallDocumentBlock

SmallDocumentBlockList - Class in loci.poi.poifs.storage

A list of SmallDocumentBlocks instances, and methods to manage the list

SmallDocumentBlockList(List) - Constructor for class loci.poi.poifs.storage.SmallDocumentBlockList

Constructor SmallDocumentBlockList

smallPalette - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

sMasks - Variable in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

The tree of subbandmask.

SMC_MAGIC - Static variable in class loci.formats.in.SMCameraReader

SMCameraReader - Class in loci.formats.in

SMCameraReader is the file format reader for SM camera files.

SMCameraReader() - Constructor for class loci.formats.in.SMCameraReader

Constructs a new SM camera reader.

smooth() - Method in class loci.plugins.util.RecordedImageProcessor

smoothedLine - Variable in class loci.poi.hssf.record.SeriesLabelsRecord

snapshot() - Method in class loci.plugins.util.RecordedImageProcessor

SO_FORMNAME_ENCLOSURE - Static variable in class loci.poi.hssf.util.RangeAddress

SOC - Static variable in interface jj2000.j2k.codestream.Markers

Start of codestream (SOC): 0xFF4F

SOD - Static variable in interface jj2000.j2k.codestream.Markers

Start of data (SOD): 0xFF93

SOD_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for SOD marker segment found

SOF0 - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

SOF0 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF0 - Static variable in class loci.formats.services.JPEGTurboServiceImpl

SOF1 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF10 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF11 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF13 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF14 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF15 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF2 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF3 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF5 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF6 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF7 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOF9 - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOFPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

SOFTWARE - Static variable in class loci.formats.tiff.IFD

SOI - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

SOI - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOLID_FILL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

SOLID_FOREGROUND - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Solidly filled

SOLVER_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

SOP - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies whether start of packet (SOP) markers should be used.

SOP - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies whether start of packet (SOP) markers should be used.

SOP - Static variable in interface jj2000.j2k.codestream.Markers

Start pf packet (SOP): 0xFF91

SOP_LENGTH - Static variable in interface jj2000.j2k.codestream.Markers

Length of SOP marker (in bytes)

SOP_MARKER_LIMIT - Static variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

The upper limit for the value of the Nsop field of the SOP marker

sopMarker - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Array used to store the SOP markers values

sopMarkSeg - Variable in class jj2000.j2k.util.CodestreamManipulator

Buffers containing the SOP marker segments

sops - Variable in class jj2000.j2k.decoder.DecoderSpecs

The Start Of Packet (SOP) markers specifications

sopUsed - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Whether or not SOP marker segment are used

sort(int[], boolean[]) - Method in class mdbtools.dbengine.MemoryData

sort the data set by the given columns each column is sorted seperate

sort(int, int, int, boolean) - Method in class mdbtools.dbengine.MemoryData

sort the data by the given column using only the given rows insertion sort is used for the sort todo: replace with a better sorting algorithm

sort - Variable in class mdbtools.dbengine.sql.OrderBy

sortBy - Variable in class mdbtools.dbengine.tasks.SimpleSort

sortFilters(FileFilter[]) - Static method in class loci.formats.gui.ComboFileFilter

Sorts the given list of file filters, and combines filters with identical descriptions into a combination filter that accepts anything any of its constituant filters do.

sortFilters(Vector) - Static method in class loci.formats.gui.ComboFileFilter

Sorts the given list of file filters, and combines filters with identical descriptions into a combination filter that accepts anything any of its constituant filters do.

sortFilters(FileFilter[]) - Static method in class loci.formats.gui.GUITools

Sorts the given list of file filters, keeping the "All supported file types" combo filter (if any) at the front of the list.

sortFilters(Vector) - Static method in class loci.formats.gui.GUITools

Sorts the given list of file filters, keeping the "All supported file types" combo filter (if any) at the front of the list.

sortFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

sortFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

sortProperties() - Method in class loci.poi.ddf.EscherOptRecord

Records should be sorted by property number before being stored.

SOS - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

SOS - Static variable in class loci.formats.codec.LosslessJPEGCodec

SOS - Static variable in class loci.formats.services.JPEGTurboServiceImpl

sos - Variable in class loci.formats.services.JPEGTurboServiceImpl

SOSMarker - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

sot - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the SOT marker segments found in tile-part headers.

SOT - Static variable in interface jj2000.j2k.codestream.Markers

Start of tile-part (SOT): 0xFF90

SOT_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for SOT marker segment found

source - Variable in class com.sun.media.imageio.stream.RawImageInputStream

The wrapperred ImageInputStream.

source - Variable in class loci.formats.cache.Cache

Current cache source.

source - Variable in class loci.formats.cache.CacheEvent

Source of the cache update.

SOURCE_CHANGED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating a new cache source.

SOURCE_LENS - Static variable in class loci.formats.in.NDPIReader

SOURCE_PARAMS - Static variable in class loci.formats.gui.CacheComponent

SOURCE_VALUES - Static variable in class loci.formats.gui.CacheComponent

sourceBands - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The sequence of source bands that are to be copied into the destination.

sourceBands - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

source and destination bands.

sourceBands - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

sourceBands - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The source bands to be encoded.

sourceBands - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

source and destination bands.

sourceBands - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The source bands to be encoded.

sourceBands - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

sourceBands - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

sourceBands - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

sourceBandsCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

sourceChooser - Variable in class loci.formats.gui.CacheComponent

Combo box for choosing cache source.

sourceHeight - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

sourceIndex(ICacheSource) - Method in class loci.formats.gui.CacheComponent

Converts cache source to source chooser index.

sourceOrigin - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

sourceOrigin - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

sourceRegion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The source region.

sourceRegion - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

sourceRegion - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

The source region.

sourceRegion - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

sources - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The image's sources, stored in a Vector.

SOURCES - Static variable in class loci.formats.gui.CacheComponent

sourceValue(int) - Method in class loci.formats.gui.CacheComponent

Generates a new cache source matching the source chooser index.

sourceWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

sourceXOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The source X offset used, along with dstXOffset and subsampleX, to map between horizontal source and destination pixel coordinates.

sourceXOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

sourceXOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

sourceYOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The source Y offset used, along with dstYOffset and subsampleY, to map between vertical source and destination pixel coordinates.

sourceYOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

sourceYOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

SP_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

SPACE - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

space - Variable in class loci.poi.hssf.record.formula.AttrPtg

SPACING_CLOSE - Static variable in class loci.poi.hssf.record.LegendRecord

SPACING_MEDIUM - Static variable in class loci.poi.hssf.record.LegendRecord

SPACING_OPEN - Static variable in class loci.poi.hssf.record.LegendRecord

SPARSE_DOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

SPARSE_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Sparse dots

SPATIAL_FREQUENCY_RESPONSE - Static variable in class loci.formats.tiff.IFD

SPATIAL_XFRM_SUBORDINATE_MAX - Static variable in class ome.jxr.constants.Image

spatialXfrmSubordinate - Variable in class ome.jxr.parser.DatastreamParser

spcoc_ch - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

spcoc_cs - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

spcoc_cw - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

spcoc_ndl - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

spcoc_ps - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

spcoc_t - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

spcod_ch - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

spcod_cs - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

spcod_cw - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

spcod_ndl - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

spcod_ps - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

spcod_t - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

spContainer - Variable in class loci.poi.hssf.model.LineShape

spContainer - Variable in class loci.poi.hssf.model.PictureShape

spContainer - Variable in class loci.poi.hssf.model.PolygonShape

spContainer - Variable in class loci.poi.hssf.model.SimpleFilledShape

spContainer - Variable in class loci.poi.hssf.model.TextboxShape

SPEC_COMP_DEF - Static variable in class jj2000.j2k.ModuleSpec

The identifier for "component default" specification

SPEC_DEF - Static variable in class jj2000.j2k.ModuleSpec

The identifier for default specification

SPEC_TILE_COMP - Static variable in class jj2000.j2k.ModuleSpec

The identifier for a "tile-component" specification

SPEC_TILE_DEF - Static variable in class jj2000.j2k.ModuleSpec

The identifier for "tile default" specification

SPEC_TYPE_COMP - Static variable in class jj2000.j2k.ModuleSpec

The identifier for a specification module that applies only to components

SPEC_TYPE_TILE - Static variable in class jj2000.j2k.ModuleSpec

The identifier for a specification module that applies only to tiles

SPEC_TYPE_TILE_COMP - Static variable in class jj2000.j2k.ModuleSpec

The identifier for a specification module that applies both to tiles and components

specialPlateNames - Variable in class loci.formats.in.OpenlabReader

SpecialPropertySet - Class in loci.poi.hpsf

Abstract superclass for the convenience classes SummaryInformation and DocumentSummaryInformation.

SpecialPropertySet(PropertySet) - Constructor for class loci.poi.hpsf.SpecialPropertySet

Creates a SpecialPropertySet.

SpecialPropertySet(MutablePropertySet) - Constructor for class loci.poi.hpsf.SpecialPropertySet

Creates a SpecialPropertySet.

specified - Variable in class jj2000.j2k.ModuleSpec

The specified value in string format

specified - Variable in class jj2000.j2k.StringSpec

specifyRangesBox - Variable in class loci.plugins.in.MainDialog

specTitle - Static variable in class com.sun.media.imageioimpl.common.PackageUtil

Specification Title derived from Manifest.

SPECTRA - Static variable in class loci.formats.FormatTools

Identifies the Spectra dimensional type, representing a dimension consisting of spectral channels.

spectra - Variable in class loci.formats.in.IM3Reader

SPECTRAL_SENSITIVITY - Static variable in class loci.formats.tiff.IFD

spectralMode - Variable in class loci.formats.in.PrairieMetadata.Sequence

SpectralMode of this <Sequence>.

specType - Variable in class jj2000.j2k.ModuleSpec

The type of the specification module

specValType - Variable in class jj2000.j2k.ModuleSpec

The spec type for each tile-component.

specValType - Variable in class jj2000.j2k.wavelet.WTDecompSpec

The spec type for each tile and component.

specValType - Variable in class jj2000.j2k.wavelet.WTFilterSpec

The spec type for each tile and component.

speed - Variable in class loci.formats.in.ND2Handler

SPEED_REF_KILOMETERS_PER_HOUR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSSpeedRef" tag.

SPEED_REF_KNOTS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSSpeedRef" tag.

SPEED_REF_MILES_PER_HOUR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSSpeedRef" tag.

SPGR_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

SpiderReader - Class in loci.formats.in

SpiderReader is the file format reader for SPIDER files.

SpiderReader() - Constructor for class loci.formats.in.SpiderReader

Constructs a new SPIDER reader.

SPIN_DISK_CONFOCAL - Static variable in class loci.formats.in.LegacyND2Reader

spixels - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

split(WaveletFilter, WaveletFilter) - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Splits the current subband in its four subbands.

split(WaveletFilter, WaveletFilter) - Method in class jj2000.j2k.wavelet.Subband

Splits the current subband in its four subbands.

split(WaveletFilter, WaveletFilter) - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Splits the current subband in its four subbands.

split - Variable in class loci.formats.codec.NikonCodecOptions

split - Variable in class loci.formats.in.NativeND2Reader

split - Variable in class loci.formats.in.NikonReader

split(String, String, int) - Static method in class loci.poi.hssf.usermodel.FontDetails

Split the given string into an array of strings using the given delimiter.

SPLIT_LOSSY_DECODER_CONFIGURATION_12 - Static variable in class loci.formats.codec.NikonCodec

SPLIT_LOSSY_DECODER_CONFIGURATION_14 - Static variable in class loci.formats.codec.NikonCodec

splitCBox - Variable in class loci.plugins.in.MainDialog

splitChannels(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Splits the given multi-channel image into single-channel images.

splitChannels(byte[], int, int, int, boolean, boolean) - Static method in class loci.formats.ImageTools

Splits the given multi-channel array into a 2D array.

splitChannels(byte[], byte[], int, int, int, boolean, boolean, int) - Static method in class loci.formats.ImageTools

Splits the given multi-channel array into a 2D array.

splitDims(List<ImagePlus>) - Method in class loci.plugins.in.ImagePlusReader

splitDoubles(String) - Method in class loci.formats.in.ICSReader

Splits the given string into a list of Doubles.

splitPlanes - Variable in class loci.formats.in.ZeissLSMReader

splitTBox - Variable in class loci.plugins.in.MainDialog

splitZBox - Variable in class loci.plugins.in.MainDialog

SPM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the scanning probe microscopy domain.

spqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

spqcd - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD

sprgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN

SpringUtilities - Class in loci.plugins.config

A 1.4 file that provides utility methods for creating form- or grid-style layouts with SpringLayout.

SpringUtilities() - Constructor for class loci.plugins.config.SpringUtilities

SPURIOUS_NOISE_REMOVAL - Static variable in class loci.formats.in.CellSensReader

SQ - Static variable in class loci.formats.in.DicomReader

sqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

sqcd - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD

SQCX_EXP_MASK - Static variable in interface jj2000.j2k.codestream.Markers

Exponent bitmask in SPQCX when no quantization: 3

SQCX_EXP_SHIFT - Static variable in interface jj2000.j2k.codestream.Markers

Exponent shift in SPQCX when no quantization: 3

SQCX_GB_MSK - Static variable in interface jj2000.j2k.codestream.Markers

Guard bits mask in SQCX field: 7

SQCX_GB_SHIFT - Static variable in interface jj2000.j2k.codestream.Markers

Guard bits shift in SQCX field: 5

SQCX_NO_QUANTIZATION - Static variable in interface jj2000.j2k.codestream.Markers

No quantization (i.e.

SQCX_SCALAR_DERIVED - Static variable in interface jj2000.j2k.codestream.Markers

Scalar derived (i.e.

SQCX_SCALAR_EXPOUNDED - Static variable in interface jj2000.j2k.codestream.Markers

Scalar expounded (i.e.

sql - Variable in class mdbtools.dbengine.SelectEngine

SQL - Interface in mdbtools.dbengine.sql

sql is the super interface for all sql statements

sql - Variable in class mdbtools.dbengine.tasks.AggregateQuery

sql - Variable in class mdbtools.dbengine.tasks.NonAggregateQuery

sql - Variable in class mdbtools.dbengine.Tests.Test

sqr() - Method in class loci.plugins.util.RecordedImageProcessor

sqrt() - Method in class loci.plugins.util.RecordedImageProcessor

SQUARE_ROOT - Static variable in class loci.formats.in.GelReader

squareRoot - Variable in class loci.formats.in.IvisionReader

SQUARES - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

SQUARES - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Squares

sQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The subband in which the ncb quit condition was reached

src - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

src - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

The ImageInputStream to be wrapped.

src - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

src - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Reference to the codestream reader agent

src - Variable in class jj2000.j2k.entropy.decoder.EntropyDecoder

The bit stream transport from where to get the compressed data (the source)

src - Variable in class jj2000.j2k.entropy.encoder.EntropyCoder

The source of quantized wavelet coefficients

src - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

The source of entropy coded data

src - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

The source of image data

src - Variable in class jj2000.j2k.image.ImgDataConverter

The source of image data

src - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

The source of image data

src - Variable in class jj2000.j2k.image.Tiler

The source of image data

src - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer

The entropy decoder from where to get the quantized data (the source).

src - Variable in class jj2000.j2k.quantization.quantizer.Quantizer

The source of wavelet transform coefficients

src - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

The source of quantized wavelet transform coefficients

src - Variable in class jj2000.j2k.roi.encoder.ROIScaler

The source of quantized wavelet transform coefficients

src - Variable in class jj2000.j2k.roi.ROIDeScaler

The entropy decoder from where to get the compressed data (the source)

src - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The source of image data

src - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

the code-block buffer's source i.e.

srcblk - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The source code-block to entropy code (avoids reallocation for each code-block).

srcBlk - Variable in class jj2000.j2k.image.ImgDataConverter

The block used to request data from the source in the case that a conversion seems necessary.

srcblkT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The source code-block to entropy code (avoids reallocation for each code-block), for each thread.

srcBuf - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

srcColorModel - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

srcData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

srcData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

srcHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The height of the source region being decoded from the source stream.

srcHeight - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

srcIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

srcIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

srcMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The X coordinate of the upper-left pixel of the source region being decoded from the source stream.

srcMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The Y coordinate of the upper-left pixel of the source region being decoded from the source stream.

srcPitch - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

srcPixelFormat - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

srcRaster - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

srcWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The width of the source region being decoded from the source stream.

srcWidth - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

srcXSubsampling - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

srcYSubsampling - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

srgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN

SRGN_IMPLICIT - Static variable in interface jj2000.j2k.codestream.Markers

Implicit (i.e.

SS - Static variable in class loci.formats.in.DicomReader

SS_NONE - Static variable in class loci.poi.hssf.record.FontRecord

SS_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFFont

no type offsetting (not super or subscript)

SS_SUB - Static variable in class loci.poi.hssf.record.FontRecord

SS_SUB - Static variable in class loci.poi.hssf.usermodel.HSSFFont

subscript

SS_SUPER - Static variable in class loci.poi.hssf.record.FontRecord

SS_SUPER - Static variable in class loci.poi.hssf.usermodel.HSSFFont

superscript

ssiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

SSIZ_DEPTH_BITS - Static variable in interface jj2000.j2k.codestream.Markers

Component bitdepth bits in Ssiz field in SIZ marker: 7

sss - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Error resilience segment symbol use specifications

sst - Variable in class loci.poi.hssf.model.Workbook

this contains a reference to the SSTRecord so that new stings can be added to it.

SST_RECORD_OVERHEAD - Static variable in class loci.poi.hssf.record.SSTRecord

SST overhead: the standard record overhead, plus the number of strings and the number of unique strings -- two ints

SSTDeserializer - Class in loci.poi.hssf.record

Handles the task of deserializing a SST string.

SSTDeserializer(IntMapper) - Constructor for class loci.poi.hssf.record.SSTDeserializer

SSTRecord - Class in loci.poi.hssf.record

Title: Static String Table Record

SSTRecord() - Constructor for class loci.poi.hssf.record.SSTRecord

default constructor

SSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SSTRecord

Constructs an SST record and sets its fields appropriately.

SSTRecordHeader - Class in loci.poi.hssf.record

Write out an SST header record.

SSTRecordHeader(int, int) - Constructor for class loci.poi.hssf.record.SSTRecordHeader

sstRecordHeader - Variable in class loci.poi.hssf.record.SSTSerializer

SSTRecordSizeCalculator - Class in loci.poi.hssf.record

Used to calculate the record sizes for a particular record.

SSTRecordSizeCalculator(IntMapper) - Constructor for class loci.poi.hssf.record.SSTRecordSizeCalculator

SSTSerializer - Class in loci.poi.hssf.record

This class handles serialization of SST records.

SSTSerializer(IntMapper, int, int) - Constructor for class loci.poi.hssf.record.SSTSerializer

ST - Static variable in class loci.formats.in.DicomReader

ST_ACCENTBORDERCALLOUT1 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACCENTBORDERCALLOUT2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACCENTBORDERCALLOUT3 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACCENTBORDERCALLOUT90 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACCENTCALLOUT1 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACCENTCALLOUT2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACCENTCALLOUT3 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACCENTCALLOUT90 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONBACKPREVIOUS - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONBEGINNING - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONBLANK - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONDOCUMENT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONEND - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONFORWARDNEXT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONHELP - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONHOME - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONINFORMATION - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONMOVIE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONRETURN - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ACTIONBUTTONSOUND - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ARC - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BALLOON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BENTARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BENTCONNECTOR2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BENTCONNECTOR3 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BENTCONNECTOR4 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BENTCONNECTOR5 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BENTUPARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BEVEL - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BLOCKARC - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BORDERCALLOUT1 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BORDERCALLOUT2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BORDERCALLOUT3 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BORDERCALLOUT90 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BRACEPAIR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_BRACKETPAIR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CALLOUT1 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CALLOUT2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CALLOUT3 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CALLOUT90 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CAN - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CHEVRON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CIRCULARARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CLOUDCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CUBE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CURVEDCONNECTOR2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CURVEDCONNECTOR3 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CURVEDCONNECTOR4 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CURVEDCONNECTOR5 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CURVEDDOWNARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CURVEDLEFTARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CURVEDRIGHTARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_CURVEDUPARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_DIAMOND - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_DONUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_DOUBLEWAVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_DOWNARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_DOWNARROWCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ELLIPSE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ELLIPSERIBBON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ELLIPSERIBBON2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTALTERNATEPROCESS - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTCOLLATE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTCONNECTOR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTDECISION - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTDELAY - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTDISPLAY - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTDOCUMENT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTEXTRACT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTINPUTOUTPUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTINTERNALSTORAGE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTMAGNETICDISK - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTMAGNETICDRUM - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTMAGNETICTAPE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTMANUALINPUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTMANUALOPERATION - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTMERGE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTMULTIDOCUMENT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTOFFLINESTORAGE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTOFFPAGECONNECTOR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTONLINESTORAGE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTOR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTPREDEFINEDPROCESS - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTPREPARATION - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTPROCESS - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTPUNCHEDCARD - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTPUNCHEDTAPE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTSORT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTSUMMINGJUNCTION - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FLOWCHARTTERMINATOR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_FOLDEDCORNER - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_HEART - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_HEXAGON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_HOMEPLATE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_HORIZONTALSCROLL - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_HOSTCONTROL - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_IRREGULARSEAL1 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_IRREGULARSEAL2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ISOCELESTRIANGLE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LEFTARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LEFTARROWCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LEFTBRACE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LEFTBRACKET - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LEFTRIGHTARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LEFTRIGHTARROWCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LEFTRIGHTUPARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LEFTUPARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LIGHTNINGBOLT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_LINE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_MIN - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_MOON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_NIL - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_NOSMOKING - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_NOT_PRIMATIVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_NOTCHEDCIRCULARARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_NOTCHEDRIGHTARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_OCTAGON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_PARALLELOGRAM - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_PENTAGON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_PICTUREFRAME - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_PLAQUE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_PLUS - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_QUADARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_QUADARROWCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_RECTANGLE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_RIBBON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_RIBBON2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_RIGHTARROWCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_RIGHTBRACE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_RIGHTBRACKET - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_RIGHTTRIANGLE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_ROUNDRECTANGLE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_SEAL - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_SEAL16 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_SEAL24 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_SEAL32 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_SEAL4 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_SEAL8 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_SMILEYFACE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_STAR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_STRAIGHTCONNECTOR1 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_STRIPEDRIGHTARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_SUN - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTARCHDOWNCURVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTARCHDOWNPOUR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTARCHUPCURVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTARCHUPPOUR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTBOX - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTBUTTONCURVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTBUTTONPOUR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCANDOWN - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCANUP - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCASCADEDOWN - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCASCADEUP - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCHEVRON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCHEVRONINVERTED - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCIRCLECURVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCIRCLEPOUR - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCURVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCURVEDOWN - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTCURVEUP - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTDEFLATE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTDEFLATEBOTTOM - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTDEFLATEINFLATE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTDEFLATEINFLATEDEFLATE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTDEFLATETOP - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTFADEDOWN - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTFADELEFT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTFADERIGHT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTFADEUP - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTHEXAGON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTINFLATE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTINFLATEBOTTOM - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTINFLATETOP - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTOCTAGON - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTONCURVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTONRING - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTPLAINTEXT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTRING - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTRINGINSIDE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTRINGOUTSIDE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTSIMPLE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTSLANTDOWN - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTSLANTUP - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTSTOP - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTTRIANGLE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTTRIANGLEINVERTED - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTWAVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTWAVE1 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTWAVE2 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTWAVE3 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TEXTWAVE4 - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_THICKARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_TRAPEZOID - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_UPARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_UPARROWCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_UPDOWNARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_UPDOWNARROWCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_UTURNARROW - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_VERTICALSCROLL - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_WAVE - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_WEDGEELLIPSECALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_WEDGERECTCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

ST_WEDGERRECTCALLOUT - Static variable in class loci.poi.hssf.record.EscherAggregate

STABLE - Static variable in class loci.plugins.Updater

STABLE_BUILD - Static variable in class loci.formats.UpgradeChecker

Location of the JAR artifacts for the stable releases.

STABLE_VERSION - Static variable in class loci.formats.UpgradeChecker

Version number of the latest stable release.

STACK_DISPLAY_LUT - Static variable in class loci.formats.in.CellSensReader

STACK_MAGIC_STRING - Static variable in class loci.formats.in.OBFReader

STACK_NAME - Static variable in class loci.formats.in.CellSensReader

STACK_TYPE - Static variable in class loci.formats.in.CellSensReader

STACK_VERSION - Static variable in class loci.formats.in.OBFReader

stacked - Variable in class loci.poi.hssf.record.AreaRecord

stacked - Variable in class loci.poi.hssf.record.BarRecord

stackFormatChoice - Variable in class loci.plugins.in.MainDialog

stackOrderChoice - Variable in class loci.plugins.in.MainDialog

stacks - Variable in class loci.formats.in.OBFReader

stacks - Variable in class loci.formats.in.VolocityReader

stageLabel - Variable in class loci.formats.in.MetamorphHandler

stageLabel - Variable in class ome.xml.model.Image

StageLabel - Class in ome.xml.model

StageLabel() - Constructor for class ome.xml.model.StageLabel

Default constructor.

StageLabel(Element, OMEModel) - Constructor for class ome.xml.model.StageLabel

Constructs StageLabel recursively from an XML DOM tree.

StageLabel(StageLabel) - Constructor for class ome.xml.model.StageLabel

Copy constructor.

stageNames - Variable in class loci.formats.in.MetamorphReader

stageX - Variable in class loci.formats.in.BaseZeissReader

stageX - Variable in class loci.formats.in.FEITiffReader

stageX - Variable in class loci.formats.in.MetamorphReader

stageX - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

stageXCoord - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

X stage coordinates.

stageY - Variable in class loci.formats.in.BaseZeissReader

stageY - Variable in class loci.formats.in.FEITiffReader

stageY - Variable in class loci.formats.in.MetamorphReader

stageY - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

stageYCoord - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Y stage coordinates.

stageZ - Variable in class loci.formats.in.FEITiffReader

stageZ - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

stageZCoord - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Z stage coordinates.

stamps - Variable in class loci.formats.in.FluoviewReader

Timestamps for each plane, in seconds.

stampValues - Variable in class loci.formats.in.LiFlimReader

STANDARD_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

STANDARD_PALETTE_SIZE - Static variable in class loci.poi.hssf.record.PaletteRecord

The standard size of an XLS palette

start - Variable in class loci.formats.in.EPSReader

Starting line of pixel data.

start - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry

start - Variable in class loci.formats.Modulo

start - Variable in class loci.formats.tiff.OnDemandLongArray

start() - Method in class loci.tests.testng.ThreadNameBasedDiscriminator

start() - Method in class loci.tests.testng.TimestampedLogFileAppender

START_BLOCK_STATE - Static variable in class loci.common.CBZip2InputStream

START_OFFSET - Static variable in class loci.formats.in.BioRadGelReader

START_TIME - Static variable in class loci.formats.in.ZeissLSMReader

startCoordinate - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry

startDocument() - Method in class loci.common.xml.ValidationSAXHandler

startDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the start double underline

startDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the start double underline

started - Variable in class loci.tests.testng.ThreadNameBasedDiscriminator

startElement(String, String, String, Attributes) - Method in class loci.common.xml.MetadataHandler

startElement(String, String, String, Attributes) - Method in class loci.common.xml.ValidationSAXHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.AFIReader.AFIHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.BioRadReader.BioRadHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.BioRadSCNReader.SCNHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.FEITiffReader.FEIHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.FlexReader.FlexHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.FlexReader.MeaHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.FlexReader.ResHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.ImaconReader.ImaconHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.InCellReader.InCellHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.InCellReader.MinimalInCellHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.IvisionReader.IvisionHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.LeicaHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.MetamorphHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.MicromanagerReader.MicromanagerHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.ND2Handler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.OperettaReader.OperettaHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.ScanrReader.ScanrHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.in.ZeissTIFFHandler

startElement(String, String, String, Attributes) - Method in class loci.formats.out.OMEXMLWriter.OMEHandler

startIndex - Variable in class loci.formats.FilePattern

Indices into the pattern indicating the start of a numerical block.

startingPosition - Variable in class loci.formats.in.ZeissCZIReader.Segment

startLevelROI - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

This parameter defines the lowest resolution levels to belong to the ROI.

startloc - Variable in class loci.poi.hssf.dev.BiffViewer.RecordDetails

startOfRecord - Variable in class loci.poi.hssf.record.SSTSerializer

startOfSST - Variable in class loci.poi.hssf.record.SSTSerializer

startPos - Variable in class com.sun.media.imageio.stream.StreamSegment

startTime - Variable in class loci.formats.in.PerkinElmerReader

startTime - Variable in class loci.formats.in.ZeissLSMReader.Recording

startTime - Variable in class loci.plugins.in.ImagePlusReader

startTime - Variable in class ome.xml.model.PlateAcquisition

startTiming() - Method in class loci.plugins.in.ImagePlusReader

startUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the start underline

startUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the start underline

state - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The state array for entropy coding.

state - Variable in class loci.formats.services.WlzServiceImpl

STATE_D_DL_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the diagonal down-left significance in the state array, for row 1.

STATE_D_DL_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the diagonal down-left significance in the state array, for row 1.

STATE_D_DL_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the diagonal down-left significance in the state array, for row 2.

STATE_D_DL_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the diagonal down-left significance in the state array, for row 2.

STATE_D_DR_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the diagonal down-right significance in the state array , for row 1.

STATE_D_DR_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the diagonal down-right significance in the state array , for row 1.

STATE_D_DR_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the diagonal down-right significance in the state array , for row 2.

STATE_D_DR_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the diagonal down-right significance in the state array , for row 2.

STATE_D_UL_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the diagonal up-left significance in the state array, for row 1.

STATE_D_UL_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the diagonal up-left significance in the state array, for row 1.

STATE_D_UL_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the diagonal up-left significance in the state array, for row 2.

STATE_D_UL_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the diagonal up-left significance in the state array, for row 2.

STATE_D_UR_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the diagonal up-right significance in the state array, for row 1.

STATE_D_UR_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the diagonal up-right significance in the state array, for row 1.

STATE_D_UR_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the diagonal up-right significance in the state array, for row 2.

STATE_D_UR_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the diagonal up-right significance in the state array, for row 2.

STATE_H_L_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the horizontal-left significance in the state array, for row 1.

STATE_H_L_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the horizontal-left significance in the state array, for row 1.

STATE_H_L_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the horizontal-left significance in the state array, for row 2.

STATE_H_L_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the horizontal-left significance in the state array, for row 2.

STATE_H_L_SIGN_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the horizontal-left sign in the state array, for row 1.

STATE_H_L_SIGN_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the horizontal-left sign in the state array, for row 1.

STATE_H_L_SIGN_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the horizontal-left sign in the state array, for row 2.

STATE_H_L_SIGN_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the horizontal-left sign in the state array, for row 2.

STATE_H_R_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the horizontal-right significance in the state array, for row 1.

STATE_H_R_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the horizontal-right significance in the state array, for row 1.

STATE_H_R_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the horizontal-right significance in the state array, for row 2.

STATE_H_R_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the horizontal-right significance in the state array, for row 2.

STATE_H_R_SIGN_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the horizontal-right sign in the state array, for row 1.

STATE_H_R_SIGN_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the horizontal-right sign in the state array, for row 1.

STATE_H_R_SIGN_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the horizontal-right sign in the state array, for row 2.

STATE_H_R_SIGN_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the horizontal-right sign in the state array, for row 2.

STATE_NZ_CTXT_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the "not zero context" bit in the state array, for row 1.

STATE_NZ_CTXT_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the "not zero context" bit in the state array, for row 1.

STATE_NZ_CTXT_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the "not zero context" bit in the state array, for row 2.

STATE_NZ_CTXT_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the "not zero context" bit in the state array, for row 2.

STATE_PREV_MR_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the previous MR primitive applied in the state array, for row 1.

STATE_PREV_MR_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the previous MR primitive applied in the state array, for row 1.

STATE_PREV_MR_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the previous MR primitive applied in the state array, for row 2.

STATE_PREV_MR_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the previous MR primitive applied in the state array, for row 2.

STATE_SEP - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The separation between the upper and lower bits in the state array: 16

STATE_SEP - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

STATE_SIG_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the significance in the state array, for row 1.

STATE_SIG_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the significance in the state array, for row 1.

STATE_SIG_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the significance in the state array, for row 2.

STATE_SIG_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the significance in the state array, for row 2.

STATE_V_D_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the vertical-down significance in the state array, for row 1.

STATE_V_D_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the vertical-down significance in the state array, for row 1.

STATE_V_D_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the vertical-down significance in the state array, for row 2.

STATE_V_D_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the vertical-down significance in the state array, for row 2.

STATE_V_D_SIGN_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the vertical-down sign in the state array, for row 1.

STATE_V_D_SIGN_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the vertical-down sign in the state array, for row 1.

STATE_V_D_SIGN_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the vertical-down sign in the state array, for row 2.

STATE_V_D_SIGN_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the vertical-down sign in the state array, for row 2.

STATE_V_U_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the vertical-up significance in the state array, for row 1.

STATE_V_U_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the vertical-up significance in the state array, for row 1.

STATE_V_U_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the vertical-up significance in the state array, for row 2.

STATE_V_U_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the vertical-up significance in the state array, for row 2.

STATE_V_U_SIGN_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the vertical-up sign in the state array, for row 1.

STATE_V_U_SIGN_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the vertical-up sign in the state array, for row 1.

STATE_V_U_SIGN_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the vertical-up sign in the state array, for row 2.

STATE_V_U_SIGN_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the vertical-up sign in the state array, for row 2.

STATE_VISITED_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the "visited" bit in the state array, for row 1.

STATE_VISITED_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the "visited" bit in the state array, for row 1.

STATE_VISITED_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The flag bit for the "visited" bit in the state array, for row 2.

STATE_VISITED_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The flag bit for the "visited" bit in the state array, for row 2.

stateChanged(ChangeEvent) - Method in class loci.formats.gui.CacheComponent

Handles range spinner changes.

stateChanged(ChangeEvent) - Method in class loci.formats.gui.DataConverter

stateChanged(ChangeEvent) - Method in class loci.formats.gui.ImageViewer

Handles slider events.

stateChanged(ChangeEvent) - Method in class loci.plugins.util.SearchableWindow.SearchBox

stateT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The state array for each thread.

StaticFontMetrics - Class in loci.poi.hssf.usermodel

Allows the user to lookup the font metrics for a particular font without actually having the font on the system.

StaticFontMetrics() - Constructor for class loci.poi.hssf.usermodel.StaticFontMetrics

stats - Variable in class mdbtools.libmdb.MdbHandle

status - Variable in class loci.common.StatusEvent

Current status message.

status - Variable in class loci.formats.in.BioRadReader.Note

status - Variable in class loci.formats.in.SDTInfo

Last SPC_test_state return value (status).

status(boolean, String) - Static method in class loci.plugins.BF

status - Variable in class loci.plugins.config.ConfigWindow

status - Variable in class loci.plugins.config.LibraryEntry

status - Variable in class ome.xml.model.Plate

STATUS_CANCELED - Static variable in class loci.plugins.prefs.OptionsDialog

STATUS_FINISHED - Static variable in class loci.plugins.prefs.OptionsDialog

STATUS_MEASUREMENT_IN_PROGRESS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSStatus" tag.

STATUS_MEASUREMENT_INTEROPERABILITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSStatus" tag.

STATUS_OK - Static variable in class loci.plugins.prefs.OptionsDialog

StatusEvent - Class in loci.common

An event indicating a status update.

StatusEvent(String) - Constructor for class loci.common.StatusEvent

Constructs a status event.

StatusEvent(String, boolean) - Constructor for class loci.common.StatusEvent

Constructs a status event.

StatusEvent(int, int, String) - Constructor for class loci.common.StatusEvent

Constructs a status event.

StatusEvent(int, int, String, boolean) - Constructor for class loci.common.StatusEvent

Constructs a status event.

StatusListener - Interface in loci.common

A listener for status updates.

StatusReporter - Interface in loci.common

A simple interface for objects wishing to report their status to listeners.

statusUpdated(StatusEvent) - Method in interface loci.common.StatusListener

Called when status is updated.

statusUpdated(StatusEvent) - Method in class loci.plugins.in.DisplayHandler

Reports status updates via ImageJ's status bar mechanism.

statusUpdated(StatusEvent) - Method in class loci.plugins.in.ImporterPrompter

STD_RECORD_OVERHEAD - Static variable in class loci.poi.hssf.record.SSTRecord

standard record overhead: two shorts (record id plus data space size)

StdDequantizer - Class in jj2000.j2k.quantization.dequantizer

This class implements a scalar dequantizer with deadzone.

StdDequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Constructor for class jj2000.j2k.quantization.dequantizer.StdDequantizer

Initializes the source of compressed data.

StdDequantizerParams - Class in jj2000.j2k.quantization.dequantizer

This class holds the parameters for the scalar deadzone dequantizer (StdDequantizer class) for the current tile.

StdDequantizerParams() - Constructor for class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

StdEntropyCoder - Class in jj2000.j2k.entropy.encoder

This class implements the JPEG 2000 entropy coder, which codes stripes in code-blocks.

StdEntropyCoder(CBlkQuantDataSrcEnc, CBlkSizeSpec, PrecinctSizeSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec) - Constructor for class jj2000.j2k.entropy.encoder.StdEntropyCoder

Instantiates a new entropy coder engine, with the specified source of data, nominal block width and height.

StdEntropyCoder.Compressor - Class in jj2000.j2k.entropy.encoder

Class that takes care of running the 'compressCodeBlock()' method with thread local arguments.

StdEntropyCoder.Compressor(int) - Constructor for class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

Creates a new compressor object with the given index.

StdEntropyCoderOptions - Interface in jj2000.j2k.entropy

This interface define the constants that identify the possible options for the entropy coder, as well some fixed parameters of the JPEG 2000 entropy coder.

StdEntropyDecoder - Class in jj2000.j2k.entropy.decoder

This class implements the JPEG 2000 entropy decoder, which codes stripes in code-blocks.

StdEntropyDecoder(CodedCBlkDataSrcDec, DecoderSpecs, boolean, boolean, int) - Constructor for class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Instantiates a new entropy decoder engine, with the specified source of data, nominal block width and height.

StdQuantizer - Class in jj2000.j2k.quantization.quantizer

This class implements scalar quantization of integer or floating-point valued source data.

StdQuantizer(CBlkWTDataSrc, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.quantization.quantizer.StdQuantizer

Initializes the source of wavelet transform coefficients.

step - Variable in class loci.formats.FilePatternBlock

step - Variable in class loci.formats.Modulo

step - Variable in class loci.plugins.in.ImportProcess

Current step in the import preparation process.

step(ImportStep) - Method in class loci.plugins.in.ImportProcess

step - Variable in enum loci.plugins.in.ImportStep

STEP_TABLE - Static variable in enum loci.plugins.in.ImportStep

steps - Variable in class loci.formats.in.SDTInfo

stepSize - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The quantization step size of the code-block.

stepSize - Variable in class loci.formats.in.MetamorphReader

stepWMSE - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The contribution to the MSE or WMSE error that would result in the image if there was an error of exactly one quantization step size in the sample of the subband.

stepX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

The subsampling step sizes.

stepY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

The subsampling step sizes.

stitchTilesBox - Variable in class loci.plugins.in.MainDialog

STK_SUFFIX - Static variable in class loci.formats.in.MetamorphReader

stkReaders - Variable in class loci.formats.in.MetamorphReader

stks - Variable in class loci.formats.in.MetamorphReader

List of STK files in the dataset.

stop - Variable in class loci.plugins.in.ThumbLoader

stop() - Method in class loci.plugins.in.ThumbLoader

Instructs the thumbnail loader to stop loading thumbnails.

stop() - Method in class loci.tests.testng.ThreadNameBasedDiscriminator

stopt - Variable in class loci.formats.in.SDTInfo

stopTime - Variable in class loci.formats.in.SDTInfo

Time from start to - disarm (simple measurement) - or to the end of the cycle (for complex measurement).

stopWatch() - Method in class loci.formats.Memoizer

storageMethod - Variable in class loci.formats.in.MRWReader

store - Variable in class loci.formats.FileStitcher

store - Variable in class loci.formats.in.CellH5Reader

store - Variable in class loci.formats.in.FlexReader.FlexHandler

store - Variable in class loci.formats.in.InCellReader.InCellHandler

store - Variable in class loci.formats.in.LeicaHandler

store - Variable in class loci.formats.in.ZeissCZIReader

store - Variable in class ome.xml.meta.FilterMetadata

The wrapped metadata store.

storedBlockCRC - Variable in class loci.common.CBZip2InputStream

storedChannel - Variable in class loci.formats.in.SDTReader

storedCombinedCRC - Variable in class loci.common.CBZip2InputStream

storedRGB - Variable in class loci.formats.in.ICSReader

storedSeries - Variable in class loci.formats.in.SDTReader

storedSize - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry

storeHighestDims(Integer[]) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Stores the highest code-block width and height

storeKeyValue(Hashtable, String, String) - Method in class loci.formats.in.LeicaHandler

storeLine(Line, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler

Stores the Line ROI into the specified metadata store.

storeOval(OvalRoi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler

Stores the Oval ROI into the specified metadata store.

storePoint(PointRoi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler

Stores the Point ROI into the specified metadata store.

storePolygon(PolygonRoi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler

Stores the Polygon ROI into the specified metadata store.

storeRectangle(Roi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler

Stores the Rectangle ROI into the specified metadata store.

storeROI(MetadataStore, int, int) - Method in class loci.formats.in.LeicaHandler.ROI

storeROI(MetadataStore, int, int, int) - Method in class loci.formats.in.LIFReader.ROI

storeROIs(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Store basic dimensions in model

storeSeriesHashtable(int, Hashtable) - Method in class loci.formats.in.LeicaHandler

storeText(TextRoi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler

Stores the text ROI into the metadata stored.

str - Variable in class loci.poi.hssf.record.TextObjectRecord

STRATEGIES - Static variable in class loci.formats.gui.CacheComponent

strategy - Variable in class loci.formats.cache.Cache

Current cache strategy.

STRATEGY_CHANGED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating a new cache strategy.

STRATEGY_PARAMS - Static variable in class loci.formats.gui.CacheComponent

STRATEGY_VALUES - Static variable in class loci.formats.gui.CacheComponent

strategyChooser - Variable in class loci.formats.gui.CacheComponent

Combo box for choosing cache strategy.

strategyIndex(ICacheStrategy) - Method in class loci.formats.gui.CacheComponent

Converts cache strategy to strategy chooser index.

strategyValue(int) - Method in class loci.formats.gui.CacheComponent

Generates a new cache strategy matching the strategy chooser index.

strChr_ - Variable in class com.sun.media.imageioimpl.common.LZWStringTable

stream - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The ImageOutputStream to be written.

stream - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The ImageInputStream containing the TIFF source data.

stream - Variable in class com.sun.media.imageio.stream.SegmentedImageInputStream

stream - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

The output stream to write into

stream - Variable in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

stream - Variable in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter

stream - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

The output case to an ImageOutputStream.

stream - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

The output stream to write into

stream - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

The output stream to write into

stream - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The output stream to write into

stream - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

stream - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

stream - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

The output stream to write into

stream - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

stream - Variable in class loci.common.StreamHandle

InputStream to be used for reading.

stream - Variable in class loci.formats.in.ZeissCZIReader.Segment

stream - Variable in class loci.formats.services.POIServiceImpl

stream - Variable in class loci.formats.tiff.OnDemandLongArray

stream - Variable in class loci.poi.poifs.eventfilesystem.POIFSReader

stream - Variable in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

stream - Variable in class loci.poi.poifs.filesystem.DocumentInputStream

stream - Variable in class loci.poi.poifs.filesystem.DocumentOutputStream

stream - Variable in class loci.poi.poifs.filesystem.POIFSFileSystem

stream - Variable in class loci.poi.poifs.filesystem.POIFSWriterEvent

stream - Variable in class loci.poi.poifs.storage.RawDataBlock

stream - Variable in class ome.jxr.parser.Parser

stream - Variable in class ome.metakit.ColumnMap

stream - Variable in class ome.metakit.MetakitReader

STREAM_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

STREAM_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

StreamHandle - Class in loci.common

Abstract IRandomAccess implementation for reading from InputStreams and writing to OutputStreams.

StreamHandle() - Constructor for class loci.common.StreamHandle

Construct a new StreamHandle.

streamMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

streamMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

StreamMsgLogger - Class in jj2000.j2k.util

This class implements the MsgLogger interface for streams.

StreamMsgLogger(OutputStream, OutputStream, int) - Constructor for class jj2000.j2k.util.StreamMsgLogger

Constructs a StreamMsgLogger that uses 'outstr' as the 'out' stream, and 'errstr' as the 'err' stream.

StreamMsgLogger(Writer, Writer, int) - Constructor for class jj2000.j2k.util.StreamMsgLogger

Constructs a StreamMsgLogger that uses 'outstr' as the 'out' stream, and 'errstr' as the 'err' stream.

StreamMsgLogger(PrintWriter, PrintWriter, int) - Constructor for class jj2000.j2k.util.StreamMsgLogger

Constructs a StreamMsgLogger that uses 'outstr' as the 'out' stream, and 'errstr' as the 'err' stream.

streamNames - Variable in class loci.formats.tools.AmiraParameters

streamPosition0 - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Stream position when setInput() was called.

streams - Variable in class loci.formats.tools.AmiraParameters

streamSegment - Variable in class com.sun.media.imageio.stream.SegmentedImageInputStream

StreamSegment - Class in com.sun.media.imageio.stream

A utility class representing a segment within a stream as a long starting position and an int length.

StreamSegment() - Constructor for class com.sun.media.imageio.stream.StreamSegment

Constructs a StreamSegment.

StreamSegment(long, int) - Constructor for class com.sun.media.imageio.stream.StreamSegment

Constructs a StreamSegment with a given starting position and length.

StreamSegmentMapper - Interface in com.sun.media.imageio.stream

An interface for use with the SegmentedImageInputStream class.

StreamSegmentMapperImpl - Class in com.sun.media.imageio.stream

An implementation of the StreamSegmentMapper interface that requires an explicit list of the starting locations and lengths of the source segments.

StreamSegmentMapperImpl(long[], int[]) - Constructor for class com.sun.media.imageio.stream.StreamSegmentMapperImpl

streamTypes - Variable in class loci.formats.tools.AmiraParameters

strHsh_ - Variable in class com.sun.media.imageioimpl.common.LZWStringTable

stride - Variable in class loci.formats.codec.RPZACodec

strikeout - Variable in class loci.formats.in.BaseZeissReader.Shape

strikeout - Static variable in class loci.poi.hssf.record.FontRecord

string - Variable in class loci.poi.hssf.usermodel.HSSFRichTextString

string - Variable in class loci.poi.hssf.usermodel.HSSFTextbox

STRING_MINIMAL_OVERHEAD - Static variable in class loci.poi.hssf.record.SSTRecord

overhead for each string includes the string's character count (a short) and the flag describing its characteristics (a byte)

StringFormatException - Exception in jj2000.j2k.util

Thrown to indicate that the application has attempted to parse a badly formatted string.

StringFormatException() - Constructor for exception jj2000.j2k.util.StringFormatException

Creates the exception with an empty messgage.

StringFormatException(String) - Constructor for exception jj2000.j2k.util.StringFormatException

Creates the exception with the specified detail message.

StringLiteral() - Method in class loci.poi.hssf.model.FormulaParser

StringOption - Class in loci.plugins.prefs

A string option for one of the plugins.

StringOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.StringOption

Constructs a string option with the parameters from the given map.

StringOption(String, boolean, String, String, String, Vector<String>) - Constructor for class loci.plugins.prefs.StringOption

Constructs a string option with the given parameters.

StringPtg - Class in loci.poi.hssf.record.formula

Number Stores a String value in a formula value stored in the format <length 2 bytes>char[]

StringPtg() - Constructor for class loci.poi.hssf.record.formula.StringPtg

StringPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.StringPtg

Create a StringPtg from a byte array read from disk

StringPtg(String) - Constructor for class loci.poi.hssf.record.formula.StringPtg

Create a StringPtg from a string representation of the number Number format is not checked, it is expected to be validated in the parser that calls this method.

stringRecord - Variable in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

StringRecord - Class in loci.poi.hssf.record

Supports the STRING record structure.

StringRecord() - Constructor for class loci.poi.hssf.record.StringRecord

StringRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.StringRecord

Constructs a String record and sets its fields appropriately.

strings - Variable in class loci.poi.hssf.record.SSTDeserializer

strings - Variable in class loci.poi.hssf.record.SSTRecordSizeCalculator

strings - Variable in class loci.poi.hssf.record.SSTSerializer

StringSpec - Class in jj2000.j2k

This class extends ModuleSpec class in order to hold tile-component specifications using Strings.

StringSpec(int, int, byte) - Constructor for class jj2000.j2k.StringSpec

Constructs an empty 'StringSpec' with specified number of tile and components.

StringSpec(int, int, byte, String, String[], J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.StringSpec

Constructs a new 'StringSpec' for the specified number of components:tiles and the arguments of optName option.

stringTable - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

stringTable - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

stringTable - Variable in class loci.formats.in.VolocityReader

StringUtil - Class in loci.poi.util

Title: String Utility Description: Collection of string handling utilities

StringUtil() - Constructor for class loci.poi.util.StringUtil

Constructor for the StringUtil object

stringValue - Variable in class loci.poi.hssf.usermodel.HSSFCell

STRIP_BYTE_COUNTS - Static variable in class loci.formats.tiff.IFD

STRIP_OFFSETS - Static variable in class loci.formats.tiff.IFD

STRIPE_HEIGHT - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The stripe height.

stripHeader() - Method in class loci.formats.in.NativeQTReader

Cut off header bytes from a resource fork file.

stripNamespacePrefix(String) - Static method in class ome.xml.model.AbstractOMEModelObject

Strips the namespace prefix off of a given tag name.

stripOrTileByteCountsPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

stripOrTileOffsetsPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

strips - Variable in class loci.formats.in.PictReader

Vector of byte arrays representing individual rows.

stripString(String) - Static method in class loci.common.DataTools

Remove null bytes from a string.

strLen_ - Variable in class com.sun.media.imageioimpl.common.LZWStringTable

each entry corresponds to a code and contains the length of data that the code expands to when decoded.

strNxt_ - Variable in class com.sun.media.imageioimpl.common.LZWStringTable

stroke - Variable in class loci.poi.hssf.usermodel.EscherGraphics2d

strokeColor - Variable in class ome.xml.model.Shape

strokeDashArray - Variable in class ome.xml.model.Shape

strokeWidth - Variable in class ome.xml.model.Shape

STRUCTURE_LABELS_1 - Static variable in class loci.formats.in.BioRadReader

Structure labels.

STRUCTURE_LABELS_2 - Static variable in class loci.formats.in.BioRadReader

STRUCTURE_LABELS_3 - Static variable in class loci.formats.in.BioRadReader

STRUCTURE_LABELS_4 - Static variable in class loci.formats.in.BioRadReader

STRUCTURE_LABELS_5 - Static variable in class loci.formats.in.BioRadReader

STRUCTURE_LABELS_6 - Static variable in class loci.formats.in.BioRadReader

structuredAnnotations - Variable in class ome.xml.model.BooleanAnnotation

structuredAnnotations - Variable in class ome.xml.model.CommentAnnotation

structuredAnnotations - Variable in class ome.xml.model.DoubleAnnotation

structuredAnnotations - Variable in class ome.xml.model.FileAnnotation

structuredAnnotations - Variable in class ome.xml.model.ListAnnotation

structuredAnnotations - Variable in class ome.xml.model.LongAnnotation

structuredAnnotations - Variable in class ome.xml.model.MapAnnotation

structuredAnnotations - Variable in class ome.xml.model.OME

StructuredAnnotations - Class in ome.xml.model

StructuredAnnotations() - Constructor for class ome.xml.model.StructuredAnnotations

Default constructor.

StructuredAnnotations(Element, OMEModel) - Constructor for class ome.xml.model.StructuredAnnotations

Constructs StructuredAnnotations recursively from an XML DOM tree.

StructuredAnnotations(StructuredAnnotations) - Constructor for class ome.xml.model.StructuredAnnotations

Copy constructor.

structuredAnnotations - Variable in class ome.xml.model.TagAnnotation

structuredAnnotations - Variable in class ome.xml.model.TermAnnotation

structuredAnnotations - Variable in class ome.xml.model.TimestampAnnotation

structuredAnnotations - Variable in class ome.xml.model.XMLAnnotation

STUB_FIELD - Static variable in class loci.formats.services.LuraWaveServiceImpl

Identifying field in stub class.

STYLE_BUILT_IN - Static variable in class loci.poi.hssf.record.StyleRecord

STYLE_USER_DEFINED - Static variable in class loci.poi.hssf.record.StyleRecord

StyleRecord - Class in loci.poi.hssf.record

Title: Style Record

StyleRecord() - Constructor for class loci.poi.hssf.record.StyleRecord

StyleRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.StyleRecord

Constructs a Style record and sets its fields appropriately.

SUB - Static variable in class loci.formats.in.APNGReader

SUB_IFD - Static variable in class loci.formats.tiff.IFD

SUB_SEC_TIME - Static variable in class loci.formats.tiff.IFD

SUB_SEC_TIME_DIGITIZED - Static variable in class loci.formats.tiff.IFD

SUB_SEC_TIME_ORIGINAL - Static variable in class loci.formats.tiff.IFD

subb_HH - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The reference to the HH subband resulting from the decomposition of this subband.

subb_HH - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The reference to the HH subband resulting from the decomposition of this subband.

subb_HL - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The reference to the HL subband (horizontal high-pass) resulting from the decomposition of this subband.

subb_HL - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The reference to the HL subband (horizontal high-pass) resulting from the decomposition of this subband.

subb_LH - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The reference to the LH subband (vertical high-pass) resulting from the decomposition of this subband.

subb_LH - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The reference to the LH subband (vertical high-pass) resulting from the decomposition of this subband.

subb_LL - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The reference to the LL subband resulting from the decomposition of this subband.

subb_LL - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The reference to the LL subband resulting from the decomposition of this subband.

Subband - Class in jj2000.j2k.wavelet

This abstract class represents a subband in a bidirectional tree structure that describes the subband decomposition for a wavelet transform.

Subband() - Constructor for class jj2000.j2k.wavelet.Subband

Creates a Subband element with all the default values.

Subband(int, int, int, int, int, WaveletFilter[], WaveletFilter[]) - Constructor for class jj2000.j2k.wavelet.Subband

Creates the top-level node and the entire subband tree, with the top-level dimensions, the number of decompositions, and the decomposition tree as specified.

SubbandAn - Class in jj2000.j2k.wavelet.analysis

This class represents a subband in a bidirectional tree structure that describes the subband decomposition for a wavelet transform, specifically for the analysis side.

SubbandAn() - Constructor for class jj2000.j2k.wavelet.analysis.SubbandAn

Creates a SubbandAn element with all the default values.

SubbandAn(int, int, int, int, int, WaveletFilter[], WaveletFilter[]) - Constructor for class jj2000.j2k.wavelet.analysis.SubbandAn

Creates the top-level node and the entire subband tree, with the top-level dimensions, the number of decompositions, and the decomposition tree as specified.

SubbandRectROIMask - Class in jj2000.j2k.roi.encoder

This class describes the ROI mask for a single subband.

SubbandRectROIMask(Subband, int[], int[], int[], int[], int) - Constructor for class jj2000.j2k.roi.encoder.SubbandRectROIMask

The constructor of the SubbandROIMask takes the dimensions of the subband as parameters.

SubbandROIMask - Class in jj2000.j2k.roi.encoder

This abstract class describes the ROI mask for a single subband.

SubbandROIMask(int, int, int, int) - Constructor for class jj2000.j2k.roi.encoder.SubbandROIMask

The constructor of the SubbandROIMask takes the dimensions of the subband as parameters

SubbandSyn - Class in jj2000.j2k.wavelet.synthesis

This class represents a subband in a tree structure that describes the subband decomposition for a wavelet transform, specifically for the syhthesis side.

SubbandSyn() - Constructor for class jj2000.j2k.wavelet.synthesis.SubbandSyn

Creates a SubbandSyn element with all the default values.

SubbandSyn(int, int, int, int, int, WaveletFilter[], WaveletFilter[]) - Constructor for class jj2000.j2k.wavelet.synthesis.SubbandSyn

Creates the top-level node and the entire subband tree, with the top-level dimensions, the number of decompositions, and the decomposition tree as specified.

SUBBLOCK_BEAM_SPLITTER - Static variable in class loci.formats.in.ZeissLSMReader

SUBBLOCK_DATA_CHANNEL - Static variable in class loci.formats.in.ZeissLSMReader

SUBBLOCK_DETECTION_CHANNEL - Static variable in class loci.formats.in.ZeissLSMReader

SUBBLOCK_END - Static variable in class loci.formats.in.ZeissLSMReader

SUBBLOCK_ILLUMINATION_CHANNEL - Static variable in class loci.formats.in.ZeissLSMReader

SUBBLOCK_LASER - Static variable in class loci.formats.in.ZeissLSMReader

SUBBLOCK_MARKER - Static variable in class loci.formats.in.ZeissLSMReader

SUBBLOCK_RECORDING - Static variable in class loci.formats.in.ZeissLSMReader

Subblock types.

SUBBLOCK_TIMER - Static variable in class loci.formats.in.ZeissLSMReader

SUBBLOCK_TRACK - Static variable in class loci.formats.in.ZeissLSMReader

subbTrees - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The subband trees for each component in the current tile.

subbTrees - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The subband trees for each component, in each tile.

SUBFILE_TYPE - Static variable in class loci.formats.tiff.IFD

SUBFILE_TYPE_FULL_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "SubfileType" tag.

SUBFILE_TYPE_REDUCED_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "SubfileType" tag.

SUBFILE_TYPE_SINGLE_PAGE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "SubfileType" tag.

subFrom - Variable in class loci.poi.hssf.record.PageBreakRecord.Break

SUBJECT_DISTANCE - Static variable in class loci.formats.tiff.IFD

SUBJECT_DISTANCE_RANGE - Static variable in class loci.formats.tiff.IFD

SUBJECT_DISTANCE_RANGE_CLOSE_VIEW - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SubjectDistanceRange" tag.

SUBJECT_DISTANCE_RANGE_DISTANT_VIEW - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SubjectDistanceRange" tag.

SUBJECT_DISTANCE_RANGE_MACRO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SubjectDistanceRange" tag.

SUBJECT_DISTANCE_RANGE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "SubjectDistanceRange" tag.

SUBJECT_LOCATION - Static variable in class loci.formats.tiff.IFD

SubRecord - Class in loci.poi.hssf.record

Subrecords are part of the OBJ class.

SubRecord() - Constructor for class loci.poi.hssf.record.SubRecord

SubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SubRecord

subrecords - Variable in class loci.poi.hssf.record.ObjRecord

subResolutionIFDs - Variable in class loci.formats.in.MinimalTiffReader

List of sub-resolution IFDs for each IFD in the current TIFF with the same order as ifds.

SubResolutionTest - Class in loci.tests.testng

Demonstration of the sub-resolution API.

SubResolutionTest() - Constructor for class loci.tests.testng.SubResolutionTest

subsamp - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

subsample(Raster, int[], int, int, int, int, int, int, Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

subsampleX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The horizontal subsampling factor.

subsampleX - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

subsampleY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The vertical subsampling factor.

subsampleY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

subsamplingX - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

subsamplingY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

subsX - Variable in class jj2000.j2k.image.ImgDataJoiner

The subsampling factor along the horizontal direction, for every component

subsY - Variable in class jj2000.j2k.image.ImgDataJoiner

The subsampling factor along the vertical direction, for every component

subTag - Variable in class loci.formats.in.OpenlabReader

subTo - Variable in class loci.poi.hssf.record.PageBreakRecord.Break

Subtract() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a Subtract

SubtractPtg - Class in loci.poi.hssf.record.formula

SubtractPtg() - Constructor for class loci.poi.hssf.record.formula.SubtractPtg

SubtractPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.SubtractPtg

success - Variable in class loci.plugins.LociImporter

Flag indicating whether last operation was successful.

suCh2 - Variable in class loci.common.CBZip2InputStream

suChPrev - Variable in class loci.common.CBZip2InputStream

suCount - Variable in class loci.common.CBZip2InputStream

suffix - Variable in class loci.formats.in.GIFReader

SUFFIX - Static variable in class loci.formats.in.TCSReader

suffixes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

suffixes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

suffixes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

suffixes - Variable in class loci.formats.FormatHandler

Valid suffixes for this file format.

SUFFIXES - Static variable in class loci.formats.gui.LegacyQTTools

suffixes - Variable in class loci.formats.ImageReader

Valid suffixes for this file format.

suffixes - Variable in class loci.formats.ImageWriter

Valid suffixes for all file format writers.

SUFFIXES - Static variable in class loci.formats.in.FlexReader

suffixes - Variable in class loci.plugins.config.FormatEntry

suffixNecessary - Variable in class loci.formats.FormatReader

Whether the file extension matching one of the reader's suffixes is necessary to identify the file as an instance of this format.

suffixSufficient - Variable in class loci.formats.FormatReader

Whether the file extension matching one of the reader's suffixes is sufficient to identify the file as an instance of this format.

suggestFileExtension() - Method in class loci.poi.hssf.usermodel.HSSFPictureData

Suggests a file extension for this image.

suI2 - Variable in class loci.common.CBZip2InputStream

suJ2 - Variable in class loci.common.CBZip2InputStream

sum - Variable in class loci.poi.hssf.record.formula.AttrPtg

Sum - Class in mdbtools.dbengine.functions

Sum() - Constructor for class mdbtools.dbengine.functions.Sum

sum - Variable in class mdbtools.dbengine.functions.Sum

SUMMARY_INFORMATION_ID - Static variable in class loci.poi.hpsf.wellknown.SectionIDMap

The SummaryInformation's section's format ID.

SummaryInformation - Class in loci.poi.hpsf

Convenience class representing a Summary Information stream in a Microsoft Office document.

SummaryInformation(PropertySet) - Constructor for class loci.poi.hpsf.SummaryInformation

Creates a SummaryInformation from a given PropertySet.

summaryInformationProperties - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Contains the summary information property ID values and associated strings.

supbookpos - Variable in class loci.poi.hssf.model.WorkbookRecordList

SupBookRecord - Class in loci.poi.hssf.record

Title: Sup Book

SupBookRecord() - Constructor for class loci.poi.hssf.record.SupBookRecord

SupBookRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.SupBookRecord

Constructs a Extern Sheet record and sets its fields appropriately.

surfaceWind - Variable in class loci.formats.in.HRDGDFReader

suRNToGo - Variable in class loci.common.CBZip2InputStream

suRTPos - Variable in class loci.common.CBZip2InputStream

suTPos - Variable in class loci.common.CBZip2InputStream

suZ - Variable in class loci.common.CBZip2InputStream

SVSReader - Class in loci.formats.in

SVSReader is the file format reader for Aperio SVS TIFF files.

SVSReader() - Constructor for class loci.formats.in.SVSReader

Constructs a new SVS reader.

swap(short) - Static method in class loci.common.DataTools

swap(char) - Static method in class loci.common.DataTools

swap(int) - Static method in class loci.common.DataTools

swap(long) - Static method in class loci.common.DataTools

swap(float) - Static method in class loci.common.DataTools

swap(double) - Static method in class loci.common.DataTools

swap - Variable in class loci.formats.gui.DataConverter

swapColors(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree.Node

exchange colors with another node

SwapDialog - Class in loci.plugins.in

Bio-Formats Importer dimension swapper dialog box.

SwapDialog(ImportProcess) - Constructor for class loci.plugins.in.SwapDialog

Creates a dimension swapper dialog for the Bio-Formats Importer.

swapDimensions(String) - Method in class loci.formats.DimensionSwapper

Sets the input dimension order according to the given string (e.g., "XYZCT").

swapDimsBox - Variable in class loci.plugins.in.MainDialog

SwappableMetadata - Class in loci.formats

Extends CoreMetadata to include the notion of an "input order" for planes: the input order being the order planes are stored on disk.

SwappableMetadata() - Constructor for class loci.formats.SwappableMetadata

SwappableMetadata(IFormatReader, int) - Constructor for class loci.formats.SwappableMetadata

SwappableMetadata(SwappableMetadata) - Constructor for class loci.formats.SwappableMetadata

swapPixelArrays() - Method in class loci.plugins.util.RecordedImageProcessor

swapPosition(BinaryTree.Node, BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree

swap two nodes (except for their content), taking care of special cases where one is the other's parent ...

SWATCH_SIZE - Static variable in class loci.plugins.in.ColorDialog

SWEPT_FIELD_CONFOCAL - Static variable in class loci.formats.in.LegacyND2Reader

switchLM - Static variable in class jj2000.j2k.entropy.decoder.MQDecoder

Whether LPS and MPS should be switched

switchLM - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Whether LPS and MPS should be switched

symbol - Variable in class ome.units.unit.Unit

SYMBOL_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Symbol character set

symbufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Buffer for symbols to send to the MQ-coder, for each thread.

sync() - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader

Synchronizes this object with the underlying byte based input.

syncPlane() - Method in class loci.plugins.util.DataBrowser

Updates the ImagePlus's displayed plane to match the slider values.

syncSliders() - Method in class loci.plugins.util.DataBrowser

Updates the slider values to match the ImagePlus's displayed plane.

synFD - Variable in class loci.formats.in.SDTInfo

synHF - Variable in class loci.formats.in.SDTInfo

syntaxError(String) - Method in class loci.formats.tools.AmiraParameters

synTH - Variable in class loci.formats.in.SDTInfo

synthetize_hpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilter

Reconstructs the output signal by the synthesis filter, recomposing the low-pass and high-pass input signals in one output signal.

synthetize_hpf(float[], int, int, int, float[], int, int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat

A specific version of the synthetize_hpf() method that works on float data.

synthetize_hpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat

The general version of the synthetize_hpf() method, it just calls the specialized version.

synthetize_hpf(float[], int, int, int, float[], int, int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

An implementation of the synthetize_hpf() method that works on int data, for the inverse 9x7 wavelet transform using the lifting scheme.

synthetize_hpf(int[], int, int, int, int[], int, int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt

A specific version of the synthetize_hpf() method that works on int data.

synthetize_hpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt

The general version of the synthetize_hpf() method, it just calls the specialized version.

synthetize_hpf(int[], int, int, int, int[], int, int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

An implementation of the synthetize_hpf() method that works on int data, for the inverse 5x3 wavelet transform using thelifting scheme.

synthetize_lpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilter

Reconstructs the output signal by the synthesis filter, recomposing the low-pass and high-pass input signals in one output signal.

synthetize_lpf(float[], int, int, int, float[], int, int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat

A specific version of the synthetize_lpf() method that works on float data.

synthetize_lpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat

The general version of the synthetize_lpf() method, it just calls the specialized version.

synthetize_lpf(float[], int, int, int, float[], int, int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

An implementation of the synthetize_lpf() method that works on int data, for the inverse 9x7 wavelet transform using the lifting scheme.

synthetize_lpf(int[], int, int, int, int[], int, int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt

A specific version of the synthetize_lpf() method that works on int data.

synthetize_lpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt

The general version of the synthetize_lpf() method, it just calls the specialized version.

synthetize_lpf(int[], int, int, int, int[], int, int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

An implementation of the synthetize_lpf() method that works on int data, for the inverse 5x3 wavelet transform using the lifting scheme.

SynWTFilter - Class in jj2000.j2k.wavelet.synthesis

This abstract class defines the methods of all synthesis wavelet filters.

SynWTFilter() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilter

SynWTFilterFloat - Class in jj2000.j2k.wavelet.synthesis

This extends the synthesis wavelet filter general definitions of SynWTFilter by adding methods that work for float data specifically.

SynWTFilterFloat() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat

SynWTFilterFloatLift9x7 - Class in jj2000.j2k.wavelet.synthesis

This class inherits from the synthesis wavelet filter definition for int data.

SynWTFilterFloatLift9x7() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

SynWTFilterInt - Class in jj2000.j2k.wavelet.synthesis

This extends the synthesis wavelet filter general definitions of SynWTFilter by adding methods that work for int data specifically.

SynWTFilterInt() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterInt

SynWTFilterIntLift5x3 - Class in jj2000.j2k.wavelet.synthesis

This class inherits from the synthesis wavelet filter definition for int data.

SynWTFilterIntLift5x3() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

SynWTFilterSpec - Class in jj2000.j2k.wavelet.synthesis

This class extends ModuleSpec class for synthesis filters specification holding purpose.

SynWTFilterSpec(int, int, byte) - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Constructs a new 'SynWTFilterSpec' for the specified number of components and tiles.

synZC - Variable in class loci.formats.in.SDTInfo

SystemOutLogger - Class in loci.poi.util

A logger class that strives to make it as easy as possible for developers to write log calls, while simultaneously making those calls as cheap as possible by performing lazy evaluation of the log message.

SystemOutLogger() - Constructor for class loci.poi.util.SystemOutLogger

SZ_INCR - Static variable in class jj2000.j2k.codestream.writer.BitOutputBuffer

The increment size for the buffer, 16 bytes.

SZ_INCR - Static variable in class jj2000.j2k.entropy.encoder.LayersInfo

The size increment for the arrays

SZ_INIT - Static variable in class jj2000.j2k.codestream.writer.BitOutputBuffer

The initial size for the buffer, 32 bytes.

SZ_INIT - Static variable in class jj2000.j2k.entropy.encoder.LayersInfo

The initial size for the arrays: 10

T

t - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

T - Static variable in class loci.formats.AxisGuesser

Prefix endings indicating time dimension.

t - Variable in class loci.formats.in.MicromanagerReader.Index

t - Variable in class loci.formats.in.OperettaReader.Plane

t - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

T4_OPTIONS - Static variable in class loci.formats.tiff.IFD

T4_OPTIONS_2D_CODING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "T4Options" tag.

T4_OPTIONS_EOL_BYTE_ALIGNED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "T4Options" tag.

T4_OPTIONS_UNCOMPRESSED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "T4Options" tag.

t4Options - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

T6_OPTIONS - Static variable in class loci.formats.tiff.IFD

T6_OPTIONS_UNCOMPRESSED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "T6Options" tag.

t6Options - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

T_AXIS - Static variable in class loci.formats.AxisGuesser

Axis type for time points.

T_KEY - Static variable in class loci.formats.in.LiFlimReader

T_NUM - Static variable in class loci.formats.FormatTools

T_STRING - Static variable in class loci.formats.in.SDTInfo

TAB - Static variable in class loci.poi.hssf.model.FormulaParser

tab() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current tab (sheet) name

tab() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current tab (sheet) name

tab_col_entry_size - Variable in class mdbtools.libmdb.MdbFormatConstants

tab_cols_start_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

tab_first_dpg_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

tab_num_cols_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

tab_num_idxs_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

tab_num_ridxs_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

tab_num_rows_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

tab_ridx_entry_size - Variable in class mdbtools.libmdb.MdbFormatConstants

tab_usage_map_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

TabIdRecord - Class in loci.poi.hssf.record

Title: Sheet Tab Index Array Record

TabIdRecord() - Constructor for class loci.poi.hssf.record.TabIdRecord

TabIdRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.TabIdRecord

Constructs a TabID record and sets its fields appropriately.

table - Variable in class loci.formats.codec.HuffmanCodecOptions

table - Variable in class mdbtools.dbengine.sql.FQColumn

Table - Interface in mdbtools.dbengine

table - Variable in class mdbtools.dbengine.tasks.LoadData

Table - Class in mdbtools.libmdb

Table() - Constructor for class mdbtools.libmdb.Table

table1 - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

table2 - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

TABLE_A - Static variable in class mdbtools.dbengine.Tests

TABLE_CARS - Static variable in class mdbtools.dbengine.Tests

TABLE_LOCATION - Static variable in class mdbtools.dbengine.Tests

TABLE_PERSON - Static variable in class mdbtools.dbengine.Tests

table_pg - Variable in class mdbtools.libmdb.MdbCatalogEntry

tableIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

tableIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

tableMap - Variable in class mdbtools.dbengine.SelectEngine

tableMap - Variable in class mdbtools.dbengine.tasks.AggregateQuery

tableMap - Variable in class mdbtools.dbengine.tasks.FilterData

tableMap - Variable in class mdbtools.dbengine.tasks.NonAggregateQuery

tableMap - Variable in class mdbtools.dbengine.tasks.SimpleSort

tableName - Static variable in class mdbtools.tests.ColumnTest

tableNames - Variable in class ome.metakit.MetakitReader

tables - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

tables - Variable in class mdbtools.dbengine.sql.Select

tables - Variable in class mdbtools.dbengine.Tests.SimpleDataSource

tabpos - Variable in class loci.poi.hssf.model.WorkbookRecordList

tabs - Static variable in class loci.poi.hssf.record.WindowOneRecord

tacG - Variable in class loci.formats.in.SDTInfo

tacLH - Variable in class loci.formats.in.SDTInfo

tacLL - Variable in class loci.formats.in.SDTInfo

tacOF - Variable in class loci.formats.in.SDTInfo

tacR - Variable in class loci.formats.in.SDTInfo

tag - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField

The tag.

tag - Variable in class loci.formats.in.OpenlabReader

tag - Variable in class loci.formats.in.PhotoshopTiffReader

tag - Variable in class loci.formats.tiff.TiffIFDEntry

The Tag that identifies the field.

TAG - Static variable in class loci.tests.IOTester

tag - Variable in enum ome.jxr.ifd.IFDEntry

TAG_APERTURE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the lens aperture (type RATIONAL).

TAG_ARTIST - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Artist" tag.

TAG_BAD_FAX_LINES - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

Tag indicating the number of bad fax lines (type SHORT or LONG).

TAG_BITS_PER_SAMPLE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "BitsPerSample" tag.

TAG_BRIGHTNESS_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the value of brightness (type SRATIONAL).

TAG_CELL_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "cell_length" tag.

TAG_CELL_WIDTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Cell_Width" tag.

TAG_CFA_PATTERN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the color filter array geometric pattern of the image sensor when a one-chip color area sensor if used (type UNDEFINED).

TAG_CLEAN_FAX_DATA - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

Tag indicating the number of lines of clean fax data (type SHORT).

TAG_COLOR_MAP - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "ColorMap" tag.

TAG_COLOR_SPACE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the color space information (type SHORT).

TAG_COMPONENTS_CONFIGURATION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag containing the components configuration information (type UNDEFINED, count = 4).

TAG_COMPRESSED_BITS_PER_PIXEL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the number of compressed bits per pixel (type RATIONAL).

TAG_COMPRESSION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Compression" tag.

TAG_CONSECUTIVE_BAD_LINES - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

Tag indicating the number of consecutive bad lines (type SHORT or LONG).

TAG_CONTRAST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the direction of contrast processing applied by the camera when the image was shot.

TAG_COPYRIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Copyright" tag.

tag_count - Variable in class loci.formats.in.ZeissTIFFHandler

TAG_CUSTOM_RENDERED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the use of special processing on image data, such as rendering geared to output.

TAG_DATE_TIME - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "DateTime" tag.

TAG_DATE_TIME_DIGITIZED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the date and time when the image was stored as digital data (type ASCII).

TAG_DATE_TIME_ORIGINAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the date and time when the original image was generated (type ASCII).

TAG_DEVICE_SETTING_DESCRIPTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating information on the picture-taking conditions of a particular camera model.

TAG_DIGITAL_ZOOM_RATIO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the digital zoom ratio when the image was shot.

TAG_DOCUMENT_NAME - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "document_name" tag.

TAG_DOT_RANGE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "DotRange" tag.

TAG_EXIF_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

Tag pointing to the EXIF IFD (type LONG).

TAG_EXIF_VERSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag containing the EXIF version number (type UNDEFINED, count = 4).

TAG_EXPOSURE_BIAS_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the exposure bias (type SRATIONAL).

TAG_EXPOSURE_INDEX - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the exposure index selected on the camera or input device at the time the image was captured (type RATIONAL).

TAG_EXPOSURE_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the exposure mode set when the image was shot.

TAG_EXPOSURE_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the class of the programs used to set exposure when the picture was taken (type SHORT).

TAG_EXPOSURE_TIME - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the exposure time, in seconds (type RATIONAL).

TAG_EXTRA_SAMPLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "ExtraSamples" tag.

TAG_F_NUMBER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the F number (type RATIONAL).

TAG_FILE_SOURCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the image source (type UNDEFINED).

TAG_FILL_ORDER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "fill_order" tag.

TAG_FLASH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the flash firing status and flash return status (type SHORT).

TAG_FLASH_ENERGY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the strobe energy at the time the image was captured, as measured in Beam Candle Power Seconds (BCPS) (type RATIONAL).

TAG_FLASHPIX_VERSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the FlashPix version number (type UNDEFINED, count = 4).

TAG_FOCAL_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the actual focal length of the lens, in millimeters (type RATIONAL).

TAG_FOCAL_LENGTH_IN_35MM_FILM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the equivalent focal length assuming a 35mm film camera, in millimeters.

TAG_FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

Indicates the unit for measuring FocalPlaneXResolution and FocalPlaneYResolution (type SHORT).

TAG_FOCAL_PLANE_X_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

Indicates the number of pixels in the image width (X) direction per FocalPlaneResolutionUnit on the camera focal plane (type RATIONAL).

TAG_FOCAL_PLANE_Y_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

Indicate the number of pixels in the image height (Y) direction per FocalPlaneResolutionUnit on the camera focal plane (type RATIONAL).

TAG_FREE_BYTE_COUNTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "FreeByteCounts" tag.

TAG_FREE_OFFSETS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "FreeOffsets" tag.

TAG_GAIN_CONTROL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the degree of overall image gain adjustment.

TAG_GEO_ASCII_PARAMS - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

A tag used to store all ASCII-values GeoKeys.

TAG_GEO_DOUBLE_PARAMS - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

A tag used to store all double-values GeoKeys.

TAG_GEO_KEY_DIRECTORY - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

A tag used to store the GeoKey directory.

TAG_GPS_ALTITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Altitude (type RATIONAL, count = 1).

TAG_GPS_ALTITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Altitude reference (type BYTE, count = 1);

TAG_GPS_AREA_INFORMATION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Name of GPS area (type UNDEFINED).

TAG_GPS_DATE_STAMP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the GPS date (type ASCII, count 11).

TAG_GPS_DEST_BEARING - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Bearing of destination (type RATIONAL, count = 1).

TAG_GPS_DEST_BEARING_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Reference for bearing of destination (type ASCII, count = 2).

TAG_GPS_DEST_DISTANCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Distance to destination (type RATIONAL, count = 1).

TAG_GPS_DEST_DISTANCE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Reference for distance to destination (type ASCII, count = 2).

TAG_GPS_DEST_LATITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Latitude of destination (type RATIONAL, count = 3).

TAG_GPS_DEST_LATITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Reference for latitude of destination (type ASCII, count = 2).

TAG_GPS_DEST_LONGITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Longitude of destination (type RATIONAL, count = 3).

TAG_GPS_DEST_LONGITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Reference for longitude of destination (type ASCII, count = 2).

TAG_GPS_DIFFERENTIAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the GPS differential correction (type SHORT, count = 1).

TAG_GPS_DOP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Measurement precision (type RATIONAL, count = 1).

TAG_GPS_IMG_DIRECTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Direction of image (type RATIONAL, count = 1).

TAG_GPS_IMG_DIRECTION_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Reference for direction of image (type ASCII, count = 2).

TAG_GPS_INFO_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

Tag pointing to a GPS info IFD (type LONG).

TAG_GPS_INFO_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

Deprecated.

Superseded by EXIFParentTIFFTagSet.TAG_GPS_INFO_IFD_POINTER

TAG_GPS_LATITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Latitude (type RATIONAL, count = 3).

TAG_GPS_LATITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the North or South latitude (type ASCII, count = 2).

TAG_GPS_LONGITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Longitude (type RATIONAL, count = 3).

TAG_GPS_LONGITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the East or West Longitude (type ASCII, count = 2).

TAG_GPS_MAP_DATUM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Geodetic survey data used (type ASCII).

TAG_GPS_MEASURE_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the GPS measurement mode (type ASCII, count = 2).

TAG_GPS_PROCESSING_METHOD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Name of GPS processing method (type UNDEFINED).

TAG_GPS_SATELLITES - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the GPS satellites used for measurement (type ASCII).

TAG_GPS_SPEED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Speed of GPS receiver (type RATIONAL, count = 1).

TAG_GPS_SPEED_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Speed unit (type ASCII, count = 2).

TAG_GPS_STATUS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the GPS receiver status (type ASCII, count = 2).

TAG_GPS_TIME_STAMP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the GPS time (atomic clock) (type RATIONAL, count = 3).

TAG_GPS_TRACK - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Direction of movement (type RATIONAL, count = 1).

TAG_GPS_TRACK_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the Reference for direction of movement (type ASCII, count = 2).

TAG_GPS_VERSION_ID - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A tag indicating the GPS tag version (type BYTE, count = 4).

TAG_GRAY_RESPONSE_CURVE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "GrayResponseCurve" tag.

TAG_GRAY_RESPONSE_UNIT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "GrayResponseUnit" tag.

TAG_HALFTONE_HINTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "HalftoneHints" tag.

TAG_HOST_COMPUTER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "HostComputer" tag.

TAG_ICC_PROFILE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "ICC Profile" tag.

TAG_IMAGE_DESCRIPTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Image_description" tag.

TAG_IMAGE_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "ImageLength" tag.

TAG_IMAGE_UNIQUE_ID - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating an identifier assigned uniquely to each image.

TAG_IMAGE_WIDTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "ImageWidth" tag.

TAG_INK_NAMES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "InkNames" tag.

TAG_INK_SET - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "InkSet" tag.

TAG_INTEROPERABILITY_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag pointing to an interoperability IFD (type LONG).

TAG_INTEROPERABILITY_INDEX - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

A tag indicating the identification of the Interoperability rule (type ASCII).

TAG_ISO_SPEED_RATINGS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the ISO speed and ISO latitude of the camera or input device, as specified in ISO 12232^xiv (type SHORT).

TAG_JPEG_AC_TABLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGACTables" tag.

TAG_JPEG_DC_TABLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGDCTables" tag.

TAG_JPEG_INTERCHANGE_FORMAT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGInterchangeFormat" tag.

TAG_JPEG_INTERCHANGE_FORMAT_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGInterchangeFormatLength" tag.

TAG_JPEG_LOSSLESS_PREDICTORS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGLosslessPredictors" tag.

TAG_JPEG_POINT_TRANSFORMS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGPointTransforms" tag.

TAG_JPEG_PROC - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGProc" tag.

TAG_JPEG_Q_TABLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGQTables" tag.

TAG_JPEG_RESTART_INTERVAL - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGRestartInterval" tag.

TAG_JPEG_TABLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "JPEGTables" tag.

TAG_LIGHT_SOURCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicatingthe kind of light source (type SHORT).

TAG_MAKE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Make" tag.

TAG_MAKER_NOTE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating a manufacturer-defined maker note (type UNDEFINED).

TAG_MARKER_NOTE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

Deprecated.

Superseded by EXIFTIFFTagSet.TAG_MAKER_NOTE.

TAG_MAX_APERTURE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the smallest F number of the lens (type RATIONAL).

TAG_MAX_SAMPLE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Max_sample_value" tag.

TAG_METERING_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the metering mode (type SHORT).

TAG_MIN_SAMPLE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Min_sample_value" tag.

TAG_MODEL - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Model" tag.

TAG_MODEL_PIXEL_SCALE - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

A tag used to specify the size of raster pixel spacing in model space units.

TAG_MODEL_TIE_POINT - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

A tag used to store raster->model tiepoint pairs.

TAG_MODEL_TRANSFORMATION - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

A tag used to specify the transformation matrix between the raster space and the model space.

TAG_NEW_SUBFILE_TYPE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "NewSubfileType" tag.

TAG_NUMBER_OF_INKS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "NumberOfInks" tag.

TAG_OECF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the optoelectric conversion function, specified in ISO 14254^xv (type UNDEFINED).

TAG_ORIENTATION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Orientation" tag.

TAG_PAGE_NAME - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "PageName" tag.

TAG_PAGE_NUMBER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "PageNumber" tag.

TAG_PHOTOMETRIC_INTERPRETATION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "PhotometricInterpretation" tag.

TAG_PIXEL_X_DIMENSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the pixel X dimension (type SHORT or LONG).

TAG_PIXEL_Y_DIMENSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the pixel Y dimension (type SHORT or LONG).

TAG_PLANAR_CONFIGURATION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "PlanarConfiguration" tag.

TAG_PREDICTOR - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Predictor" tag.

TAG_PRIMARY_CHROMATICITES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "PrimaryChromaticites" tag.

TAG_REFERENCE_BLACK_WHITE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "ReferenceBlackWhite" tag.

TAG_RELATED_SOUND_FILE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the name of a related sound file (type ASCII).

TAG_RESOLUTION_UNIT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "ResolutionUnit" tag.

TAG_ROWS_PER_STRIP - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Rows_per_strip" tag.

TAG_S_MAX_SAMPLE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "SMaxSampleValue" tag.

TAG_S_MIN_SAMPLE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "SMinSampleValue" tag.

TAG_SAMPLE_FORMAT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "SampleFormat" tag.

TAG_SAMPLES_PER_PIXEL - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Samples_per_pixel" tag.

TAG_SATURATION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the direction of saturation processing applied by the camera when the image was shot.

TAG_SCENE_CAPTURE_TYPE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the type of scene that was shot.

TAG_SCENE_TYPE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the type of scene (type UNDEFINED).

TAG_SENSING_METHOD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the sensor type on the camera or input device (type SHORT).

TAG_SHARPNESS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the direction of sharpness processing applied by the camera when the image was shot.

TAG_SHUTTER_SPEED_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the shutter speed (type SRATIONAL).

TAG_SOFTWARE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Software" tag.

TAG_SPATIAL_FREQUENCY_RESPONSE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the camera or input device spatial frequency table and SFR values in the direction of image width, image height, and diagonal direction, as specified in ISO 12233^xvi (type UNDEFINED).

TAG_SPECTRAL_SENSITIVITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the spectral sensitivity of each channel of the camera used (type ASCII).

TAG_STRIP_BYTE_COUNTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Strip_byte_counts" tag.

TAG_STRIP_OFFSETS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Strip_offsets" tag.

TAG_SUB_SEC_TIME - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag used to record fractions of seconds for the "DateTime" tag (type ASCII).

TAG_SUB_SEC_TIME_DIGITIZED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag used to record fractions of seconds for the "DateTimeDigitized" tag (type ASCII).

TAG_SUB_SEC_TIME_ORIGINAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag used to record fractions of seconds for the "DateTimeOriginal" tag (type ASCII).

TAG_SUBFILE_TYPE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "SubfileType" tag.

TAG_SUBJECT_AREA - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the location and area of the main subject in the overall scene.

TAG_SUBJECT_DISTANCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the distance to the subject, in meters (type RATIONAL).

TAG_SUBJECT_DISTANCE_RANGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the distance to the subject.

TAG_SUBJECT_LOCATION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the column and row of the center pixel of the main subject in the scene (type SHORT, count = 2).

TAG_T4_OPTIONS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "T4Options" tag.

TAG_T6_OPTIONS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "T6Options" tag.

TAG_TARGET_PRINTER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "TargetPrinter" tag.

TAG_THRESHHOLDING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "Threshholding" tag.

TAG_TILE_BYTE_COUNTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "TileByteCounts" tag.

TAG_TILE_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "TileLength" tag.

TAG_TILE_OFFSETS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "TileOffsets" tag.

TAG_TILE_WIDTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "TileWidth" tag.

TAG_TRANSFER_FUNCTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "TransferFunction" tag.

TAG_TRANSFER_RANGE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "TransferRange" tag.

TAG_USER_COMMENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating a user comment (type UNDEFINED).

TAG_WHITE_BALANCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A tag indicating the white balance mode set when the image was shot.

TAG_WHITE_POINT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "WhitePoint" tag.

TAG_X_POSITION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "XPosition" tag.

TAG_X_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "XResolution" tag.

TAG_Y_CB_CR_COEFFICIENTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "YCbCrCoefficients" tag.

TAG_Y_CB_CR_POSITIONING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "YCbCrPositioning" tag.

TAG_Y_CB_CR_SUBSAMPLING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "YCbCrSubsampling" tag.

TAG_Y_POSITION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "YPosition" tag.

TAG_Y_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Constant specifying the "YResolution" tag.

TagAnnotation - Class in ome.xml.model

TagAnnotation() - Constructor for class ome.xml.model.TagAnnotation

Default constructor.

TagAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.TagAnnotation

Constructs TagAnnotation recursively from an XML DOM tree.

TagAnnotation(TagAnnotation) - Constructor for class ome.xml.model.TagAnnotation

Copy constructor.

tagAnnotations - Variable in class ome.xml.model.StructuredAnnotations

tagID - Variable in class loci.formats.in.BaseZeissReader.Shape

taglist - Variable in class loci.formats.in.ZeissTIFFReader.Plane

tagNumber - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField

The tag number.

tags - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

tags - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

tags - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

tags - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

tags - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

tags - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

tags - Variable in class loci.formats.in.ZeissTIFFHandler.TagSet

tags - Variable in class loci.formats.in.ZeissTIFFReader.Plane

tagSet - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

tagset - Variable in class loci.formats.in.ZeissTIFFHandler.Plane

tagset - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling

tagSets - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

The TIFFTagSets associated with this directory.

tagSets - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

tagsToParse - Variable in class loci.formats.in.BaseZeissReader

TagTreeDecoder - Class in jj2000.j2k.codestream.reader

This class implements the tag tree decoder.

TagTreeDecoder(int, int) - Constructor for class jj2000.j2k.codestream.reader.TagTreeDecoder

Creates a tag tree decoder with 'w' elements along the horizontal dimension and 'h' elements along the vertical direction.

TagTreeEncoder - Class in jj2000.j2k.codestream.writer

This class implements the tag tree encoder.

TagTreeEncoder(int, int) - Constructor for class jj2000.j2k.codestream.writer.TagTreeEncoder

Creates a tag tree encoder with 'w' elements along the horizontal dimension and 'h' elements along the vertical direction.

TagTreeEncoder(int, int, int[]) - Constructor for class jj2000.j2k.codestream.writer.TagTreeEncoder

Creates a tag tree encoder with 'w' elements along the horizontal dimension and 'h' elements along the vertical direction.

tailRec - Variable in class loci.poi.hssf.record.EscherAggregate

list of "tail" records that need to be serialized after all drawing group records

TargaReader - Class in loci.formats.in

File format reader for Truevision Targa files.

TargaReader() - Constructor for class loci.formats.in.TargaReader

Constructs a new Targa reader.

TargaRLECodec - Class in loci.formats.codec

This class implements Targa RLE decompression.

TargaRLECodec() - Constructor for class loci.formats.codec.TargaRLECodec

target - Variable in class jj2000.j2k.util.ThreadPool.ThreadPoolThread

TARGET_PRINTER - Static variable in class loci.formats.tiff.IFD

targetE - Variable in class jj2000.j2k.util.ThreadPool

The last error thrown by a target.

targetRE - Variable in class jj2000.j2k.util.ThreadPool

The last runtime exception thrown by a target.

targetRes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Image resolution level to generate

task - Variable in class mdbtools.dbengine.tasks.AggregateQuery

task - Variable in class mdbtools.dbengine.tasks.FilterData

task - Variable in class mdbtools.dbengine.tasks.NonAggregateQuery

task - Variable in class mdbtools.dbengine.tasks.SimpleSort

Task - Interface in mdbtools.dbengine.tasks

Task is one step on the way to producing a result

tasks - Variable in class mdbtools.dbengine.SelectEngine

tBegin - Variable in class loci.plugins.in.ImporterOptions

TCHAR - Static variable in class loci.formats.in.CellSensReader

tChoice - Variable in class loci.formats.gui.DataConverter

tChoice - Variable in class loci.plugins.in.SwapDialog

TCSReader - Class in loci.formats.in

TCSReader is the file format reader for Leica TCS TIFF files and their companion XML file.

TCSReader() - Constructor for class loci.formats.in.TCSReader

tcx0 - Variable in class jj2000.j2k.image.Tiler

The horizontal coordinates of the upper-left corner of the components in the current tile

tcy0 - Variable in class jj2000.j2k.image.Tiler

The vertical coordinates of the upper-left corner of the components in the current tile.

tdepth - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

The bit-depths of transformed components

tDim - Variable in class loci.formats.out.AVIWriter

tearDown() - Method in class loci.tests.testng.Jpeg2000GrindTest

tearDown() - Method in class loci.tests.testng.OpenBytesPerformanceTest

tearDown() - Method in class loci.tests.testng.TiffWriterTest

tempCharArray2d - Variable in class loci.common.CBZip2InputStream.Data

tempEph - Variable in class jj2000.j2k.util.CodestreamManipulator

Flag indicating whether EPH marker was only intended for parsing in This class and should be removed

TEMPERATURE - Static variable in class loci.formats.in.FluoviewReader

temperature - Variable in class loci.formats.in.FluoviewReader

temperature - Variable in class loci.formats.in.InCellReader

temperature - Variable in class loci.formats.in.MetamorphHandler

temperature - Variable in class loci.formats.in.MicromanagerReader.Position

temperature - Variable in class loci.formats.in.ND2Handler

temperature - Variable in class loci.formats.in.ZeissCZIReader

Temperature - Class in ome.units.quantity

A wrapper for the Temperature class from the units implementation.

Temperature(Number, Unit<Temperature>) - Constructor for class ome.units.quantity.Temperature

temperature - Variable in class ome.xml.model.ImagingEnvironment

TEMPERATURE_TARGET - Static variable in class loci.formats.in.CellSensReader

tempFile - Variable in class loci.formats.Memoizer

TempFile - Class in loci.poi.util

Interface for creating temporary files.

TempFile() - Constructor for class loci.poi.util.TempFile

templateFile - Variable in class loci.formats.in.MIASReader

tempSop - Variable in class jj2000.j2k.util.CodestreamManipulator

Flag indicating whether SOP marker was only intended for parsing in This class and should be removed

tempZ - Variable in class loci.formats.in.MetamorphReader

tEnd - Variable in class loci.plugins.in.ImporterOptions

TERA(Unit<T>) - Static method in class ome.units.UNITS

TERAHZ - Static variable in class ome.units.UNITS

TERAM - Static variable in class ome.units.UNITS

TERAPA - Static variable in class ome.units.UNITS

TERAS - Static variable in class ome.units.UNITS

TERAV - Static variable in class ome.units.UNITS

TERAW - Static variable in class ome.units.UNITS

Term() - Method in class loci.poi.hssf.model.FormulaParser

Parse and Translate a Math Term

TERM_EASY - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

The identifier for the easy termination that is simpler than the 'TERM_NEAR_OPT' one but slightly less efficient.

TERM_FULL - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

The identifier fort the termination that uses a full flush.

TERM_NEAR_OPT - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

The identifier for the termination that uses the near optimal length calculation to terminate the arithmetic codewrod

TERM_PRED_ER - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

The identifier for the predictable termination policy for error resilience.

TermAnnotation - Class in ome.xml.model

TermAnnotation() - Constructor for class ome.xml.model.TermAnnotation

Default constructor.

TermAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.TermAnnotation

Constructs TermAnnotation recursively from an XML DOM tree.

TermAnnotation(TermAnnotation) - Constructor for class ome.xml.model.TermAnnotation

Copy constructor.

termAnnotations - Variable in class ome.xml.model.StructuredAnnotations

termCodes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Black and white terminating code table.

termCodesBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Terminating codes for black runs.

termCodesWhite - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Terminating codes for white runs.

terminate() - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput

Terminates the bit stream by calling 'flush()' and then 'reset()'.

terminate() - Method in class jj2000.j2k.entropy.encoder.MQCoder

This function flushes the remaining encoded bits and makes sure that enough information is written to the bit stream to be able to finish decoding, and then it reinitializes the internal state of the MQ coder but without modifying the context states.

terminateOnByte - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

If this is enabled the codeword (raw or MQ) is terminated on a byte boundary after each coding pass.

terminateProgressWatch() - Method in interface jj2000.j2k.util.ProgressWatch

Terminate the progress watch process

test() - Method in class loci.formats.codec.BaseCodec

Main testing method default implementation.

TEST - Static variable in class loci.tests.testng.Configuration

testAPNG() - Method in class loci.tests.testng.ConversionTest

testAVI() - Method in class loci.tests.testng.ConversionTest

testBlock(String, int) - Method in class loci.tests.IOTester

Searches for the divider tag in blocks of the given size.

testBufferedImageDimensions() - Method in class loci.tests.testng.FormatReaderTest

testByteArrayDimensions() - Method in class loci.tests.testng.FormatReaderTest

testChannelNames() - Method in class loci.tests.testng.FormatReaderTest

testCompressDecompress(String, String, boolean, int, String) - Method in class loci.tests.testng.ConversionTest

testCompressDecompress(String, String, boolean, int, int, String, boolean) - Method in class loci.tests.testng.ConversionTest

testCompressDecompressedDeflate() - Method in class loci.tests.testng.CompressDecompressTest

Tests the compression and decompression using Deflate.

testCompressDecompressedJ2KLossless() - Method in class loci.tests.testng.CompressDecompressTest

Tests the compression and decompression using JPEG2000.

testCompressDecompressedJ2KLossy() - Method in class loci.tests.testng.CompressDecompressTest

Tests the compression and decompression using JPEG2000-lossy.

testCompressDecompressedJPEG() - Method in class loci.tests.testng.CompressDecompressTest

Tests the compression and decompression using JPEG.

testCompressDecompressedUncompressed() - Method in class loci.tests.testng.CompressDecompressTest

Tests the compression and decompression using Uncompressed.

testConsistentReader() - Method in class loci.tests.testng.FormatReaderTest

testDeltaT() - Method in class loci.tests.testng.FormatReaderTest

testDetectors() - Method in class loci.tests.testng.FormatReaderTest

testDimensionOrder() - Method in class loci.tests.testng.FormatReaderTest

testEmissionWavelengths() - Method in class loci.tests.testng.FormatReaderTest

testEPS() - Method in class loci.tests.testng.ConversionTest

testEqualOMEXML() - Method in class loci.tests.testng.FormatReaderTest

testExcitationWavelengths() - Method in class loci.tests.testng.FormatReaderTest

testExposureTimes() - Method in class loci.tests.testng.FormatReaderTest

testFalseColor() - Method in class loci.tests.testng.FormatReaderTest

testHandleCount() - Method in class loci.tests.testng.FileHandleTest

testICS() - Method in class loci.tests.testng.ConversionTest

testImageCount() - Method in class loci.tests.testng.FormatReaderTest

testImageDescriptions() - Method in class loci.tests.testng.FormatReaderTest

testImageNames() - Method in class loci.tests.testng.FormatReaderTest

testIndexed() - Method in class loci.tests.testng.FormatReaderTest

testIO() - Method in class loci.tests.IOTester

testIsInterleaved() - Method in class loci.tests.testng.FormatReaderTest

testIsThisType() - Method in class loci.tests.testng.FormatReaderTest

testIsThisTypeConsistent() - Method in class loci.tests.testng.FormatReaderTest

testJPEG() - Method in class loci.tests.testng.ConversionTest

testJPEG2000() - Method in class loci.tests.testng.ConversionTest

testLightSources() - Method in class loci.tests.testng.FormatReaderTest

testLittleEndian() - Method in class loci.tests.testng.FormatReaderTest

testMemoFileUsage() - Method in class loci.tests.testng.FormatReaderTest

testOMETIFF() - Method in class loci.tests.testng.ConversionTest

testOMEXML() - Method in class loci.tests.testng.ConversionTest

testOMEXML() - Method in class loci.tests.testng.FormatReaderTest

testOpenBytesAllTilesNewBuffer() - Method in class loci.tests.testng.OpenBytesPerformanceTest

testOpenBytesAllTilesPreAllocatedBuffer() - Method in class loci.tests.testng.OpenBytesPerformanceTest

testOpenBytesBlocksByRow1MB() - Method in class loci.tests.testng.OpenBytesPerformanceTest

testOpenBytesBlocksByRow512KB() - Method in class loci.tests.testng.OpenBytesPerformanceTest

testOpenBytesBlocksByRowPlaneSize() - Method in class loci.tests.testng.OpenBytesPerformanceTest

testOpenBytesHalfPlane() - Method in class loci.tests.testng.OpenBytesPerformanceTest

testOpenBytesPlane() - Method in class loci.tests.testng.OpenBytesPerformanceTest

testPerformance() - Method in class loci.tests.testng.FormatReaderTest

testPhysicalSizeX() - Method in class loci.tests.testng.FormatReaderTest

testPhysicalSizeY() - Method in class loci.tests.testng.FormatReaderTest

testPhysicalSizeZ() - Method in class loci.tests.testng.FormatReaderTest

testPixelsHashes() - Method in class loci.tests.testng.FormatReaderTest

testPixelType() - Method in class loci.tests.testng.FormatReaderTest

testPlanePositions() - Method in class loci.tests.testng.FormatReaderTest

testPyramidReadTilesMultiThreaded() - Method in class loci.tests.testng.Jpeg2000GrindTest

testPyramidWriteTiles() - Method in class loci.tests.testng.Jpeg2000GrindTest

testQuartersActualSize() - Method in class loci.tests.testng.OpenBytesPerformanceTest

testQuartersTwiceActualSize() - Method in class loci.tests.testng.OpenBytesPerformanceTest

testQuickTime() - Method in class loci.tests.testng.ConversionTest

testRequiredDirectories() - Method in class loci.tests.testng.FormatReaderTest

testRGB() - Method in class loci.tests.testng.FormatReaderTest

Tests - Class in mdbtools.dbengine

Tests cases for the engine itself

Tests() - Constructor for class mdbtools.dbengine.Tests

tests - Variable in class mdbtools.dbengine.Tests

Tests.SimpleData - Class in mdbtools.dbengine

Tests.SimpleData(Object[][]) - Constructor for class mdbtools.dbengine.Tests.SimpleData

Tests.SimpleDataSource - Class in mdbtools.dbengine

Tests.SimpleDataSource() - Constructor for class mdbtools.dbengine.Tests.SimpleDataSource

Tests.SimpleDataSourceTable - Class in mdbtools.dbengine

Tests.SimpleDataSourceTable() - Constructor for class mdbtools.dbengine.Tests.SimpleDataSourceTable

Tests.Test - Class in mdbtools.dbengine

Tests.Test() - Constructor for class mdbtools.dbengine.Tests.Test

testSaneOMEXML() - Method in class loci.tests.testng.FormatReaderTest

testSaneUsedFiles() - Method in class loci.tests.testng.FormatReaderTest

testSequential(String) - Method in class loci.tests.IOTester

Searches for the divider tag using repeated readChar() calls.

testSeriesCount() - Method in class loci.tests.testng.FormatReaderTest

testSizeC() - Method in class loci.tests.testng.FormatReaderTest

testSizeT() - Method in class loci.tests.testng.FormatReaderTest

testSizeX() - Method in class loci.tests.testng.FormatReaderTest

testSizeY() - Method in class loci.tests.testng.FormatReaderTest

testSizeZ() - Method in class loci.tests.testng.FormatReaderTest

testSubimagePixelsHashes() - Method in class loci.tests.testng.FormatReaderTest

testSubResolutionCount() - Method in class loci.tests.testng.SubResolutionTest

testThumbnailByteArrayDimensions() - Method in class loci.tests.testng.FormatReaderTest

testThumbnailImageDimensions() - Method in class loci.tests.testng.FormatReaderTest

testThumbSizeX() - Method in class loci.tests.testng.FormatReaderTest

testThumbSizeY() - Method in class loci.tests.testng.FormatReaderTest

testTIFF() - Method in class loci.tests.testng.ConversionTest

testTileHeight() - Method in class loci.tests.testng.FormatReaderTest

testTileWidth() - Method in class loci.tests.testng.FormatReaderTest

testTimeIncrement() - Method in class loci.tests.testng.FormatReaderTest

TestTools - Class in loci.tests.testng

Utility methods for use with TestNG tests.

TestTools() - Constructor for class loci.tests.testng.TestTools

TestTools.TileLoopIteration - Interface in loci.tests.testng

A single iteration of a tile for each loop.

testUnflattenedPixelsHashes() - Method in class loci.tests.testng.FormatReaderTest

testUnflattenedSubimagePixelsHashes() - Method in class loci.tests.testng.FormatReaderTest

testValidXML() - Method in class loci.tests.testng.FormatReaderTest

testWriteFullImage() - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of the full size image as JPEG200 stream.

testWriteImageFourTiles() - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of the image divided in 4 blocks.

testWriteImageSplitHorizontal() - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of the image with 2 tiles with full width.

testWriteImageSplitVertical() - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of the image with 2 tiles with full height.

testWriterConsistency(IFormatWriter) - Method in class loci.tests.testng.FormatWriterTest

testWriteUnevenTilesImage128x128Block() - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of blocks of 256x256.

testWriteUnevenTilesImage256x256Block() - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of blocks of 256x256.

text - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

text - Variable in class loci.formats.in.BaseZeissReader.Shape

TEXT - Static variable in class loci.formats.in.LeicaHandler.ROI

text - Variable in class loci.formats.in.LeicaHandler.ROI

TEXT - Static variable in class loci.formats.in.LIFReader.ROI

text - Variable in class loci.formats.in.LIFReader.ROI

TEXT - Static variable in class loci.formats.in.ZeissLSMReader

Drawing element types.

text - Variable in class ome.xml.model.Shape

TEXT__ANCHORTEXT - Static variable in class loci.poi.ddf.EscherProperties

TEXT__BIDIR - Static variable in class loci.poi.ddf.EscherProperties

TEXT__FONTROTATION - Static variable in class loci.poi.ddf.EscherProperties

TEXT__IDOFNEXTSHAPE - Static variable in class loci.poi.ddf.EscherProperties

TEXT__ROTATETEXTWITHSHAPE - Static variable in class loci.poi.ddf.EscherProperties

TEXT__SCALETEXT - Static variable in class loci.poi.ddf.EscherProperties

TEXT__SINGLECLICKSELECTS - Static variable in class loci.poi.ddf.EscherProperties

TEXT__SIZE_TEXT_TO_FIT_SHAPE - Static variable in class loci.poi.ddf.EscherProperties

TEXT__SIZESHAPETOFITTEXT - Static variable in class loci.poi.ddf.EscherProperties

TEXT__TEXTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

TEXT__TEXTFLOW - Static variable in class loci.poi.ddf.EscherProperties

TEXT__TEXTID - Static variable in class loci.poi.ddf.EscherProperties

TEXT__TEXTLEFT - Static variable in class loci.poi.ddf.EscherProperties

TEXT__TEXTRIGHT - Static variable in class loci.poi.ddf.EscherProperties

TEXT__TEXTTOP - Static variable in class loci.poi.ddf.EscherProperties

TEXT__USEHOSTMARGINS - Static variable in class loci.poi.ddf.EscherProperties

TEXT__WRAPTEXT - Static variable in class loci.poi.ddf.EscherProperties

TEXT_ORIENTATION_NONE - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

TEXT_ORIENTATION_ROT_LEFT - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

TEXT_ORIENTATION_ROT_RIGHT - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

TEXT_ORIENTATION_TOP_TO_BOTTOM - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

textAlignment - Variable in class loci.formats.in.BaseZeissReader.Shape

TextAnnotation - Class in ome.xml.model

TextAnnotation() - Constructor for class ome.xml.model.TextAnnotation

Default constructor.

TextAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.TextAnnotation

Constructs TextAnnotation recursively from an XML DOM tree.

TextAnnotation(TextAnnotation) - Constructor for class ome.xml.model.TextAnnotation

Copy constructor.

textArea - Variable in class loci.formats.tools.EditTiffG

textArea - Variable in class loci.plugins.config.TextAreaWriter

Text area component to which output should be written.

TextAreaWriter - Class in loci.plugins.config

Writer implementation that writes to a JTextArea document.

TextAreaWriter(JTextArea) - Constructor for class loci.plugins.config.TextAreaWriter

Constructs a new TextAreaWriter around the given text area component.

textBackgroundColor - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

TextboxShape - Class in loci.poi.hssf.model

Represents an textbox shape and converts between the highlevel records and lowlevel records for an oval.

TextboxShape(HSSFTextbox, int) - Constructor for class loci.poi.hssf.model.TextboxShape

Creates the low evel records for an textbox.

textChannelNames - Variable in class loci.formats.in.NativeND2Reader

textColour - Variable in class loci.formats.in.BaseZeissReader.Shape

textData - Variable in class loci.formats.in.NativeND2Reader

textEmissionWavelengths - Variable in class loci.formats.in.NativeND2Reader

textForegroundColor - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

textGridHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

textGridLeft - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

textGridTop - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

textGridWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

textLocked - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

TextObjectBaseRecord - Class in loci.poi.hssf.record

The TXO record is used to define the properties of a text box.

TextObjectBaseRecord() - Constructor for class loci.poi.hssf.record.TextObjectBaseRecord

TextObjectBaseRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.TextObjectBaseRecord

Constructs a TextObjectBase record and sets its fields appropriately.

textObjectRecord - Variable in class loci.poi.hssf.model.TextboxShape

TextObjectRecord - Class in loci.poi.hssf.record

TextObjectRecord() - Constructor for class loci.poi.hssf.record.TextObjectRecord

TextObjectRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.TextObjectRecord

TextReader - Class in loci.formats.in

Reader for text files containing tables of data.

TextReader() - Constructor for class loci.formats.in.TextReader

Constructs a new text reader.

TextRecord - Class in loci.poi.hssf.record

The text record is used to define text stored on a chart.

TextRecord() - Constructor for class loci.poi.hssf.record.TextRecord

TextRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.TextRecord

Constructs a Text record and sets its fields appropriately.

textureOffset - Variable in class loci.formats.in.AliconaReader

Image offset.

theC - Variable in class loci.tests.testng.Jpeg2000GrindTest.ChannelRunnable

theC - Variable in class ome.xml.model.Plane

theC - Variable in class ome.xml.model.Shape

thedata - Variable in class loci.poi.ddf.EscherTextboxRecord

The data for this record not including the the 8 byte header

thedata - Variable in class loci.poi.ddf.UnknownEscherRecord

The data for this record not including the the 8 byte header

thedata - Variable in class loci.poi.hssf.record.UnknownRecord

theDOMImplementationLS - Variable in class ome.specification.SchemaResolver

theFile - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

The RandomAccessFile associated with the buffer

theImage - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

theInstance - Static variable in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

theInstance - Static variable in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

theInstance - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat

theInstance - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat

theStreamMetadata - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

The stream metadata of a sequence.

theT - Variable in class ome.xml.model.Plane

theT - Variable in class ome.xml.model.Shape

theZ - Variable in class ome.xml.model.Plane

theZ - Variable in class ome.xml.model.Shape

THICK - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THICK_BACKWARD_DIAG - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THICK_BACKWARD_DIAG - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thick backward facing diagonals

THICK_FORWARD_DIAG - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THICK_FORWARD_DIAG - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thick forward facing diagonals

THICK_HORZ_BANDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THICK_HORZ_BANDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thick horizontal bands

THICK_VERT_BANDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THICK_VERT_BANDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thick vertical bands

THIN - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THIN_BACKWARD_DIAG - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THIN_BACKWARD_DIAG - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thin backward diagonal

THIN_FORWARD_DIAG - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THIN_FORWARD_DIAG - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thin forward diagonal

THIN_HORZ_BANDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THIN_HORZ_BANDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thin horizontal bands

THIN_VERT_BANDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

THIN_VERT_BANDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thin vertical bands

THIRD_ID - Static variable in class loci.formats.in.CellSensReader

thisField - Variable in class loci.formats.in.FlexReader.FlexHandler

thisId - Variable in class loci.poi.hssf.usermodel.HSSFRow.CellIterator

THOU - Static variable in class ome.units.UNITS

THREAD_POOL_SIZE - Static variable in class loci.tests.testng.Jpeg2000GrindTest

ThreadNameBasedDiscriminator - Class in loci.tests.testng

ThreadNameBasedDiscriminator() - Constructor for class loci.tests.testng.ThreadNameBasedDiscriminator

ThreadPool - Class in jj2000.j2k.util

This class implements a thread pool.

ThreadPool(int, int, String) - Constructor for class jj2000.j2k.util.ThreadPool

Creates a new thread pool of the given size, thread priority and pool name.

ThreadPool.ThreadPoolThread - Class in jj2000.j2k.util

The threads that are managed by the pool.

ThreadPool.ThreadPoolThread(int, String) - Constructor for class jj2000.j2k.util.ThreadPool.ThreadPoolThread

Creates a ThreadPoolThread object, setting its name according to the given 'idx', daemon type and the priority to the one of the pool.

THREADS_PRIORITY_INC - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The increase in priority for the compressor threads, currently 3.

THREADS_PROP_NAME - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The Java system property name for the number of threads to use: jj2000.j2k.entropy.encoder.StdEntropyCoder.nthreads

THREE - Static variable in class loci.formats.AxisGuesser

THREED__3DEFFECT - Static variable in class loci.poi.ddf.EscherProperties

THREED__CRMOD - Static variable in class loci.poi.ddf.EscherProperties

THREED__DIFFUSEAMOUNT - Static variable in class loci.poi.ddf.EscherProperties

THREED__EDGETHICKNESS - Static variable in class loci.poi.ddf.EscherProperties

THREED__EXTRUDEBACKWARD - Static variable in class loci.poi.ddf.EscherProperties

THREED__EXTRUDEFORWARD - Static variable in class loci.poi.ddf.EscherProperties

THREED__EXTRUDEPLANE - Static variable in class loci.poi.ddf.EscherProperties

THREED__EXTRUSIONCOLOR - Static variable in class loci.poi.ddf.EscherProperties

THREED__LIGHTFACE - Static variable in class loci.poi.ddf.EscherProperties

THREED__METALLIC - Static variable in class loci.poi.ddf.EscherProperties

THREED__SHININESS - Static variable in class loci.poi.ddf.EscherProperties

THREED__SPECULARAMOUNT - Static variable in class loci.poi.ddf.EscherProperties

THREED__USEEXTRUSIONCOLOR - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__AMBIENTINTENSITY - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__CONSTRAINROTATION - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__FILLHARSH - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__FILLINTENSITY - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__FILLX - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__FILLY - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__FILLZ - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__KEYHARSH - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__KEYINTENSITY - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__KEYX - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__KEYY - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__KEYZ - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ORIGINX - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ORIGINY - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__PARALLEL - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__RENDERMODE - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ROTATIONANGLE - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ROTATIONAXISX - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ROTATIONAXISY - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ROTATIONAXISZ - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ROTATIONCENTERAUTO - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ROTATIONCENTERX - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ROTATIONCENTERY - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ROTATIONCENTERZ - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__SKEWAMOUNT - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__SKEWANGLE - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__TOLERANCE - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__XROTATIONANGLE - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__XVIEWPOINT - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__YROTATIONANGLE - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__YVIEWPOINT - Static variable in class loci.poi.ddf.EscherProperties

THREEDSTYLE__ZVIEWPOINT - Static variable in class loci.poi.ddf.EscherProperties

THRESHHOLDING - Static variable in class loci.formats.tiff.IFD

THRESHHOLDING_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Thresholding" tag.

THRESHHOLDING_ORDERED_DITHER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Thresholding" tag.

THRESHHOLDING_RANDOMIZED_DITHER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Thresholding" tag.

THRESHOLD - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

threshold(int) - Method in class loci.plugins.util.RecordedImageProcessor

throwEvent(Model) - Method in class loci.poi.hssf.eventmodel.ModelFactory

Throws the model as an event to the listeners

throwRecordEvent(Record) - Method in class loci.poi.hssf.eventmodel.EventRecordFactory

sends the record event to all registered listeners.

THUMB_SIZE_X - Static variable in class loci.tests.testng.Configuration

THUMB_SIZE_Y - Static variable in class loci.tests.testng.Configuration

THUMB_TAG_2 - Static variable in class loci.formats.in.NDPIReader

thumbId - Variable in class loci.formats.in.FV1000Reader

Name of thumbnail file.

ThumbLoader - Class in loci.plugins.in

Loads thumbnails for Bio-Formats Importer series chooser in a separate thread.

ThumbLoader(IFormatReader, Panel[], Dialog) - Constructor for class loci.plugins.in.ThumbLoader

Constructs a new thumbnail loader.

ThumbLoader.SeriesInfo - Class in loci.plugins.in

Helper class for sorting series by image plane size.

ThumbLoader.SeriesInfo(int, int) - Constructor for class loci.plugins.in.ThumbLoader.SeriesInfo

thumbnail - Variable in class loci.formats.CoreMetadata

Indicates whether or not this series is a lower-resolution copy of another series.

Thumbnail - Class in loci.poi.hpsf

Class to manipulate data in the Clipboard Variant (VT_CF) format.

Thumbnail() - Constructor for class loci.poi.hpsf.Thumbnail

Default Constructor.

Thumbnail(byte[]) - Constructor for class loci.poi.hpsf.Thumbnail

Creates a Thumbnail instance and initializes with the specified image bytes.

THUMBNAIL_DIMENSION - Static variable in class loci.formats.FormatReader

Default thumbnail width and height.

thumbnailComplete(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

thumbnailComplete(ImageWriter) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter

thumbnailData - Variable in class loci.poi.hpsf.Thumbnail

A byte[] to hold a thumbnail image in (VT_CF) format.

thumbnailFile - Variable in class loci.formats.in.InCellReader.Image

thumbnailIFDs - Variable in class loci.formats.in.MinimalTiffReader

List of thumbnail IFDs for the current TIFF.

thumbnailProgress(ImageReader, float) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

thumbnailProgress(ImageWriter, float) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter

thumbnailStarted(ImageReader, int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

thumbnailStarted(ImageWriter, int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter

thumbReader - Variable in class loci.formats.in.FV1000Reader

Helper reader for thumbnail.

thumbReader - Variable in class loci.plugins.in.SeriesDialog

thumbSizeX - Variable in class loci.formats.CoreMetadata

Width (in pixels) of thumbnail images in this series.

thumbSizeX - Variable in class loci.formats.in.LeicaSCNReader.Image

thumbSizeY - Variable in class loci.formats.CoreMetadata

Height (in pixels) of thumbnail images in this series.

TickRecord - Class in loci.poi.hssf.record

The Tick record defines how tick marks and label positioning/formatting NOTE: This source is automatically generated please do not modify this file.

TickRecord() - Constructor for class loci.poi.hssf.record.TickRecord

TickRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.TickRecord

Constructs a Tick record and sets its fields appropriately.

tIdx - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Index of the current tile

tIdx - Variable in class jj2000.j2k.image.ImgDataAdapter

Index of the current tile

tIdx - Variable in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Index of the current tile

tiff - Variable in class loci.formats.in.LeicaReader

Helper readers.

tiff - Variable in class loci.formats.in.PerkinElmerReader

Helper reader.

tiff - Variable in class loci.formats.in.PrairieReader

Helper reader for opening images.

TIFF_ASCII - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for null-terminated ASCII strings.

TIFF_BYTE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for 8 bit unsigned integers.

TIFF_DOUBLE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for 64 bit IEEE doubles.

TIFF_EPS_STANDARD - Static variable in class loci.formats.in.DNGReader

TIFF_EPS_STANDARD - Static variable in class loci.formats.in.NikonReader

TIFF_FLOAT - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for 32 bit IEEE floats.

TIFF_IFD - Static variable in class loci.formats.in.CellSensReader

TIFF_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for IFD pointer defined in TIFF Tech Note 1 in TIFF Specification Supplement 1.

TIFF_LONG - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for 32 bit unsigned integers.

TIFF_RATIONAL - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for pairs of 32 bit unsigned integers.

TIFF_SBYTE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for 8 bit signed integers.

TIFF_SHORT - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for 16 bit unsigned integers.

TIFF_SLONG - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for 32 bit signed integers.

TIFF_SRATIONAL - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for pairs of 32 bit signed integers.

TIFF_SSHORT - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for 16 bit signed integers.

TIFF_SUFFIXES - Static variable in class loci.formats.in.TiffReader

TIFF_SUFFIXES - Static variable in class loci.formats.in.ZeissTIFFReader

TIFF_UNDEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

Flag for 8 bit uninterpreted bytes.

TIFFAttrInfo - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFAttrInfo() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

TIFFBaseJPEGCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

Base class for all possible forms of JPEG compression in TIFF.

TIFFBaseJPEGCompressor(String, int, boolean, ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

TIFFBaseJPEGCompressor.IIOByteArrayOutputStream - Class in com.sun.media.imageioimpl.plugins.tiff

A ByteArrayOutputStream which allows writing to an ImageOutputStream.

TIFFBaseJPEGCompressor.IIOByteArrayOutputStream() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor.IIOByteArrayOutputStream

TIFFBaseJPEGCompressor.IIOByteArrayOutputStream(int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor.IIOByteArrayOutputStream

TIFFCIELabColorConverter - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFCIELabColorConverter() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

TIFFColorConverter - Class in com.sun.media.imageio.plugins.tiff

An abstract class that performs simple color conversion on 3-banded source images, for use with the TIFF Image I/O plug-in.

TIFFColorConverter() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFColorConverter

Constructs an instance of a TIFFColorConverter.

TiffComment - Class in loci.formats.tools

Extracts the comment from the first IFD of the given TIFF file(s).

TiffComment() - Constructor for class loci.formats.tools.TiffComment

TiffCompression - Enum in loci.formats.tiff

Utility class for performing compression operations with a TIFF file.

TiffCompression(int, Codec, String) - Constructor for enum loci.formats.tiff.TiffCompression

Default constructor.

TIFFCompressionTypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Supported TIFF compression types.

TIFFCompressor - Class in com.sun.media.imageio.plugins.tiff

An abstract superclass for pluggable TIFF compressors.

TIFFCompressor(String, int, boolean) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Creates a compressor object for use in compressing TIFF data.

TiffConstants - Class in loci.formats.tiff

Generally useful TIFF-related constants.

TiffConstants() - Constructor for class loci.formats.tiff.TiffConstants

TiffData - Class in ome.xml.model

TiffData() - Constructor for class ome.xml.model.TiffData

Default constructor.

TiffData(Element, OMEModel) - Constructor for class ome.xml.model.TiffData

Constructs TiffData recursively from an XML DOM tree.

TiffData(TiffData) - Constructor for class ome.xml.model.TiffData

Copy constructor.

tiffDataBlocks - Variable in class ome.xml.model.Pixels

TIFFDecompressor - Class in com.sun.media.imageio.plugins.tiff

A class defining a pluggable TIFF decompressor.

TIFFDecompressor() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

TIFFDeflateCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

Compressor for Deflate compression.

TIFFDeflateCompressor(ImageWriteParam, int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateCompressor

TIFFDeflateDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFDeflateDecompressor(int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor

TIFFDeflater - Class in com.sun.media.imageioimpl.plugins.tiff

Compressor superclass for Deflate and ZLib compression.

TIFFDeflater(String, int, ImageWriteParam, int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater

TiffDelegateReader - Class in loci.formats.in

TiffDelegateReader is a file format reader for TIFF files.

TiffDelegateReader() - Constructor for class loci.formats.in.TiffDelegateReader

Constructs a new TIFF reader.

TiffDelegateWidgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats TIFF support.

TiffDelegateWidgets() - Constructor for class loci.plugins.config.TiffDelegateWidgets

TIFFDirectory - Class in com.sun.media.imageio.plugins.tiff

A convenience class for simplifying interaction with TIFF native image metadata.

TIFFDirectory(TIFFTagSet[], TIFFTag) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Constructs a TIFFDirectory which is aware of a given group of TIFFTagSets.

TIFFElementInfo - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFElementInfo(String[], String[], int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

TIFFEXIFJPEGCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

A TIFFCompressor for the JPEG variant of EXIF.

TIFFEXIFJPEGCompressor(ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFEXIFJPEGCompressor

TIFFFaxCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFFaxCompressor(String, int, boolean) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Constructor.

TIFFFaxDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFFaxDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

TIFFField - Class in com.sun.media.imageio.plugins.tiff

A class representing a field in a TIFF 6.0 Image File Directory.

TIFFField() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFField

The default constructor.

TIFFField(TIFFTag, int, int, Object) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFField

Constructs a TIFFField with arbitrary data.

TIFFField(TIFFTag, int, int) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFField

Constructs a data array using createArrayForType() and invokes TIFFField.TIFFField(TIFFTag,int,int,Object) with the supplied parameters and the created array.

TIFFField(TIFFTag, int) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFField

Constructs a TIFFField with a single integral value.

TIFFFieldNode - Class in com.sun.media.imageioimpl.plugins.tiff

The Node representation of a TIFFField wherein the child node is procedural rather than buffered.

TIFFFieldNode(TIFFField) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

tiffFiles - Variable in class loci.formats.in.APLReader

tiffFudge_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

modify the limits of the code values in LZW encoding due to TIFF bug / feature

TIFFIFD - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFIFD(List, TIFFTag) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

TIFFIFD(List) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

TiffIFDEntry - Class in loci.formats.tiff

This class represents a single raw TIFF IFD entry.

TiffIFDEntry(int, IFDType, int, long) - Constructor for class loci.formats.tiff.TiffIFDEntry

TIFFImageMetadata - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFImageMetadata(List) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

TIFFImageMetadata(TIFFIFD) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

TIFFImageMetadataFormat - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFImageMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat

TIFFImageMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFImageMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources

TIFFImageReader - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

TIFFImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

TIFFImageReadParam - Class in com.sun.media.imageio.plugins.tiff

A subclass of ImageReadParam allowing control over the TIFF reading process.

TIFFImageReadParam() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Constructs a TIFFImageReadParam.

TIFFImageWriteParam - Class in com.sun.media.imageio.plugins.tiff

A subclass of ImageWriteParam allowing control over the TIFF writing process.

TIFFImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Constructs a TIFFImageWriteParam instance for a given Locale.

TIFFImageWriter - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

TIFFImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

tiffInfo - Variable in class loci.formats.in.ZeissTIFFReader

TiffJAIReader - Class in loci.formats.in

TiffJAIReader is a file format reader for TIFF images.

TiffJAIReader() - Constructor for class loci.formats.in.TiffJAIReader

Constructs a new TIFF reader that uses Java Image I/O.

TIFFJPEGCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

Compressor for encoding compression type 7, TTN2/Adobe JPEG-in-TIFF.

TIFFJPEGCompressor(ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor

TIFFJPEGCompressor.JPEGSPIFilter - Class in com.sun.media.imageioimpl.plugins.tiff

A filter which identifies the ImageReaderSpi of a JPEG reader which supports JPEG native stream metadata.

TIFFJPEGCompressor.JPEGSPIFilter() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor.JPEGSPIFilter

TIFFJPEGDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFJPEGDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

TIFFLSBCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

Uncompressed data with LSB-to-MSB fill order.

TIFFLSBCompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBCompressor

TIFFLSBDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFLSBDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor

TIFFLZWCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

LZW Compressor.

TIFFLZWCompressor(int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor

TIFFLZWDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFLZWDecompressor(int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

TIFFLZWUtil - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFLZWUtil() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

TIFFMetadataFormat - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

TIFFNullCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFNullCompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFNullCompressor

TIFFNullDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFNullDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

TIFFOldJPEGDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFDecompressor for "Old JPEG" compression.

TIFFOldJPEGDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

TIFFPackBitsCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFPackBitsCompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsCompressor

TIFFPackBitsDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFPackBitsDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor

TIFFPackBitsUtil - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFPackBitsUtil() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

tiffParser - Variable in class loci.formats.in.FlowSightReader

tiffParser - Variable in class loci.formats.in.MinimalTiffReader

tiffParser - Variable in class loci.formats.in.TCSReader

tiffParser - Variable in class loci.formats.in.ZeissLSMReader

TiffParser - Class in loci.formats.tiff

Parses TIFF data from an input source.

TiffParser(String) - Constructor for class loci.formats.tiff.TiffParser

Constructs a new TIFF parser from the given file name.

TiffParser(RandomAccessInputStream) - Constructor for class loci.formats.tiff.TiffParser

Constructs a new TIFF parser from the given input source.

TiffRational - Class in loci.formats.tiff

A rational number (numerator over denominator).

TiffRational(long, long) - Constructor for class loci.formats.tiff.TiffRational

Constructs a rational number.

tiffReader - Variable in class loci.formats.in.InCellReader

tiffReader - Variable in class loci.formats.in.MicromanagerReader

Helper reader for TIFF files.

TiffReader - Class in loci.formats.in

TiffReader is the file format reader for regular TIFF files, not of any specific TIFF variant.

TiffReader() - Constructor for class loci.formats.in.TiffReader

Constructs a new Tiff reader.

tiffReader - Variable in class loci.formats.in.ZeissTIFFReader

Helper reader for TIFF files.

tiffReaders - Variable in class loci.formats.in.TCSReader

Helper readers.

TIFFRenderedImage - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFRenderedImage(TIFFImageReader, int, ImageReadParam, int, int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

TIFFRLECompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFRLECompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor

tiffs - Variable in class loci.formats.in.BDReader

tiffs - Variable in class loci.formats.in.FV1000Reader

Names of every TIFF file to open.

tiffs - Variable in class loci.formats.in.L2DReader

List of constituent TIFF files.

tiffs - Variable in class loci.formats.in.MIASReader

TIFF files - indexed by well and file.

tiffs - Variable in class loci.formats.in.MicromanagerReader.Position

tiffs - Variable in class loci.formats.in.ScanrReader

tiffs - Variable in class loci.formats.in.TCSReader

List of TIFF files.

tiffSaver - Variable in class loci.formats.out.TiffWriter

The TiffSaver that will do most of the writing.

TiffSaver - Class in loci.formats.tiff

Parses TIFF data from an input source.

TiffSaver(String) - Constructor for class loci.formats.tiff.TiffSaver

Constructs a new TIFF saver from the given filename.

TiffSaver(RandomAccessOutputStream, String) - Constructor for class loci.formats.tiff.TiffSaver

Constructs a new TIFF saver from the given output source.

TiffSaver(RandomAccessOutputStream, ByteArrayHandle) - Constructor for class loci.formats.tiff.TiffSaver

Constructs a new TIFF saver from the given output source.

TIFFStreamMetadata - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFStreamMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

TIFFStreamMetadataFormat - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFStreamMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat

TIFFStreamMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFStreamMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources

TIFFT4Compressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFT4Compressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

TIFFT6Compressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFT6Compressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor

TIFFTag - Class in com.sun.media.imageio.plugins.tiff

A class defining the notion of a TIFF tag.

TIFFTag(String, int, int, TIFFTagSet) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFTag

Constructs a TIFFTag with a given name, tag number, set of legal data types, and TIFFTagSet to which it refers.

TIFFTag(String, int, int) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFTag

Constructs a TIFFTag with a given name, tag number, and set of legal data types.

TIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing a set of TIFF tags.

TIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Constructs a TIFFTagSet.

TIFFTagSet(List) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Constructs a TIFFTagSet, given a List of TIFFTag objects.

TiffWriter - Class in loci.formats.out

TiffWriter is the file format writer for TIFF files.

TiffWriter() - Constructor for class loci.formats.out.TiffWriter

TiffWriter(String, String[]) - Constructor for class loci.formats.out.TiffWriter

TiffWriterTest - Class in loci.tests.testng

Tests writing of tiles in a tiff.

TiffWriterTest() - Constructor for class loci.tests.testng.TiffWriterTest

TIFFYCbCrColorConverter - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFYCbCrColorConverter(TIFFImageMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

TIFFYCbCrDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff

TIFFYCbCrDecompressor(TIFFDecompressor, boolean) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

TIFFZLibCompressor - Class in com.sun.media.imageioimpl.plugins.tiff

Compressor for ZLib compression.

TIFFZLibCompressor(ImageWriteParam, int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFZLibCompressor

TILE_ALTERNATE_MD5 - Static variable in class loci.tests.testng.Configuration

TILE_BYTE_COUNTS - Static variable in class loci.formats.tiff.IFD

TILE_HEIGHT - Static variable in class loci.tests.testng.Jpeg2000GrindTest

TILE_LENGTH - Static variable in class loci.formats.tiff.IFD

TILE_MD5 - Static variable in class loci.tests.testng.Configuration

TILE_NUM - Static variable in class loci.formats.FormatTools

TILE_OFFSETS - Static variable in class loci.formats.tiff.IFD

TILE_ORIGIN - Static variable in class loci.formats.in.CellSensReader

TILE_RESET - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The reset mask for new tiles

TILE_SIZE - Static variable in class loci.tests.testng.Configuration

TILE_SYSTEM - Static variable in class loci.formats.in.CellSensReader

TILE_WIDTH - Static variable in class loci.formats.tiff.IFD

TILE_WIDTH - Static variable in class loci.tests.testng.Jpeg2000GrindTest

TILE_X - Static variable in class loci.formats.FormatTools

TILE_Y - Static variable in class loci.formats.FormatTools

tileChanged() - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This function is called every time the tile is changed to indicate that there is need to make a new mask

tileCols - Variable in class loci.formats.in.MIASReader

tileCompVal - Variable in class jj2000.j2k.ModuleSpec

The specific value for each tile-component.

tileCount - Variable in class loci.formats.in.ImspectorReader

The number of mosaic tiles stored in the file.

tileCount - Variable in class loci.formats.in.LIFReader

tileDataSize - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

cache the size of the data for each tile in the stream.

tileDef - Variable in class jj2000.j2k.ModuleSpec

The default value for each tile.

tileDim - Variable in class loci.formats.services.JPEGTurboServiceImpl

tileFiles - Variable in class loci.formats.in.HamamatsuVMSReader

tileGridXOffset - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The X coordinate of the upper-left pixel of tile (0, 0).

tileGridXOffset - Variable in class loci.formats.codec.CodecOptions

Horizontal offset of the tile grid as it would be provided to: ImageWriteParam.setTiling(int, int, int, int) (WRITE).

tileGridYOffset - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The Y coordinate of the upper-left pixel of tile (0, 0).

tileGridYOffset - Variable in class loci.formats.codec.CodecOptions

Vertical offset of the tile grid as it would be provided to: ImageWriteParam.setTiling(int, int, int, int) (WRITE).

tileH - Variable in class jj2000.j2k.image.Tiler

The height of the current tile, on the reference grid.

tileHeaders - Variable in class jj2000.j2k.util.CodestreamManipulator

Buffers containing the original tile headers

tileHeight - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The height of a tile.

tileHeight - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

tileHeight - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The tile height for encoding

tileHeight - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The tile height for encoding

tileHeight - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

tileHeight - Variable in class loci.formats.codec.CodecOptions

Tile height as it would be provided to: ImageWriteParam.setTiling(int, int, int, int) (WRITE).

tileHeight - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

tileHeight - Variable in class loci.formats.in.L2DReader

tileHeight - Variable in class loci.formats.in.LeicaReader

tileHeight - Variable in class loci.formats.in.MIASReader

tileHeight - Variable in class loci.formats.in.OMETiffReader

tileHeight - Variable in class loci.formats.in.ScanrReader

tileHeight - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

tileHeightInMB - Variable in class ome.jxr.parser.DatastreamParser

tileIdx - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Index of the current tile

tileIndices - Variable in class loci.formats.in.BaseZeissReader

TileJPEGReader - Class in loci.formats.in

Reader for decoding JPEG images using java.awt.Toolkit.

TileJPEGReader() - Constructor for class loci.formats.in.TileJPEGReader

tileLength - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

tileMap - Variable in class loci.formats.in.CellSensReader

tileMap - Variable in class loci.formats.TileStitcher

tileMaskMade - Variable in class jj2000.j2k.roi.encoder.ROIMaskGenerator

Flag indicating whether a mask has been made for the current tile

tileNumber - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

tileOffsets - Variable in class loci.formats.in.CellSensReader

tileOfTileParts - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Vector containing info as to which tile each tilepart belong

tileOrStripHeight - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

tileOrStripWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

tileParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

tilePartHeadLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Length of all tile-part headers

tilePartLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Length of each tile-part (written in Psot)

tilePartNum - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The number of the tile-part in the codestream

tilePartPkdPktHeaders - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Array containing the Ippm fields of the PPT marker segments

tilePartPositions - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

tileParts - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The number of tile-parts in each tile

tileParts - Variable in class jj2000.j2k.util.CodestreamManipulator

Buffers containing the tile parts

tilePartsRead - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The number of tile-parts read so far for each tile

tilePartStart - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

tiler - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Reference to the tiler module

Tiler - Class in jj2000.j2k.image

This class places an image in the canvas coordinate system, tiles it, if so specified, and performs the coordinate conversions transparently.

Tiler(BlkImgDataSrc, int, int, int, int, int, int) - Constructor for class jj2000.j2k.image.Tiler

Constructs a new tiler with the specified 'BlkImgDataSrc' source, image origin, tiling origin and nominal tile size.

tileRows - Variable in class loci.formats.in.MIASReader

tiles - Variable in class loci.formats.codec.JPEGTileDecoder

tiles - Variable in class loci.formats.in.BaseZeissReader

tilesAcross - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

tilesAcross - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

tilesDown - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

tilesDown - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

tileStepX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Tile step sizes.

tileStepY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Tile step sizes.

TileStitcher - Class in loci.formats

TileStitcher() - Constructor for class loci.formats.TileStitcher

Constructs a TileStitcher around a new image reader.

TileStitcher(IFormatReader) - Constructor for class loci.formats.TileStitcher

Constructs a TileStitcher with the given reader.

tileStitcher - Variable in class loci.plugins.in.ImportProcess

TileStitcher.TileCoordinate - Class in loci.formats

TileStitcher.TileCoordinate() - Constructor for class loci.formats.TileStitcher.TileCoordinate

tileW - Variable in class jj2000.j2k.image.Tiler

The width of the current tile, on the reference grid.

tileWidth - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The width of a tile.

tileWidth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

tileWidth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The tile width for encoding

tileWidth - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The tile width for encoding

tileWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

tileWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

tileWidth - Variable in class loci.formats.codec.CodecOptions

Tile width as it would be provided to: ImageWriteParam.setTiling(int, int, int, int) (WRITE).

tileWidth - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

tileWidth - Variable in class loci.formats.in.L2DReader

tileWidth - Variable in class loci.formats.in.LeicaReader

tileWidth - Variable in class loci.formats.in.MIASReader

tileWidth - Variable in class loci.formats.in.OMETiffReader

tileWidth - Variable in class loci.formats.in.ScanrReader

tileWidth - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

tileWidthInMB - Variable in class ome.jxr.parser.DatastreamParser

tileX - Variable in class loci.formats.in.CellSensReader

tileX - Variable in class loci.formats.TileStitcher

tileXOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Tile grid offsets of the source, also used for destination.

tileXOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The tile grid offset for encoding

tileXOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The tile grid offset for encoding

tileXToX(int, int, int) - Static method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Converts a horizontal tile index into the X coordinate of its upper left pixel relative to a given tile grid layout specified by its X offset and tile width.

tileXToX(int) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Converts a horizontal tile index into the X coordinate of its upper left pixel.

tileY - Variable in class loci.formats.in.CellSensReader

tileY - Variable in class loci.formats.TileStitcher

tileYOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Tile grid offsets of the source, also used for destination.

tileYOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The tile grid offset for encoding

tileYOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The tile grid offset for encoding

tileYToY(int, int, int) - Static method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Converts a vertical tile index into the Y coordinate of its upper left pixel relative to a given tile grid layout specified by its Y offset and tile height.

tileYToY(int) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Converts a vertical tile index into the Y coordinate of its upper left pixel.

tilingFlag - Variable in class ome.jxr.parser.DatastreamParser

TillVisionReader - Class in loci.formats.in

TillVisionReader is the file format reader for TillVision files.

TillVisionReader() - Constructor for class loci.formats.in.TillVisionReader

Constructs a new TillVision reader.

TIM_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

time - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The cumulative wall time for the entropy coding engine, for each component.

time - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The cumulative wall time for this compressor, for each component.

time - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The cumulative wall time for the entropy coding engine, for each component.

time - Variable in class loci.common.Location.ListingsResult

time - Variable in class loci.formats.in.DicomReader

time - Variable in class loci.formats.in.MicromanagerReader.Position

time - Variable in class loci.formats.in.SDTInfo

Time of creation.

time - Variable in class loci.formats.in.SVSReader

time - Variable in class loci.plugins.in.ImagePlusReader

time() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current time

time() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current time

time(String) - Static method in class loci.tests.ZipTester

TIME - Static variable in class ome.specification.XMLMockObjects

The default time.

Time - Class in ome.units.quantity

A wrapper for the Time class from the units implementation.

Time(Number, Unit<Time>) - Constructor for class ome.units.quantity.Time

TIME_FORMAT - Static variable in class loci.formats.in.GelReader

TIME_INCREMENT - Static variable in class loci.formats.in.CellSensReader

TIME_INCREMENT - Static variable in class loci.tests.testng.Configuration

TIME_INCREMENT_UNIT - Static variable in class loci.tests.testng.Configuration

TIME_OFFSET - Static variable in class loci.formats.in.TextReader

How often to report progress during initialization, in milliseconds.

TIME_SCALE - Static variable in class loci.formats.out.LegacyQTWriter

Time scale.

TIME_START - Static variable in class loci.formats.in.CellSensReader

TIME_VALUE - Static variable in class loci.formats.in.CellSensReader

timeBins - Variable in class loci.formats.in.PQBinReader

timeBins - Variable in class loci.formats.in.SDTInfo

timeBins - Variable in class loci.formats.in.SDTReader

Number of time bins in lifetime histogram.

timeIncrement - Variable in class loci.formats.in.FEITiffReader

timeIncrement - Variable in class loci.formats.in.IPLabReader

timeIncrement - Variable in class loci.formats.in.TiffReader

timeIncrement - Variable in class loci.formats.in.ZeissLSMReader.Track

timeIncrement - Variable in class ome.xml.model.Pixels

timeIndex - Variable in class loci.formats.in.FluoviewReader

TIMEINFO - Static variable in class loci.formats.in.LeicaReader

timeMultiplier - Variable in class loci.tests.testng.FormatReaderTest

Multiplier for use adjusting timing values.

timepoint - Variable in class loci.formats.in.BaseZeissReader

timepoint - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

timepoint - Variable in class ome.xml.model.WellSample

timepointIndices - Variable in class loci.formats.in.BaseZeissReader

timePoints - Variable in class loci.formats.in.CellVoyagerReader

timepoints - Variable in class loci.formats.in.SDTInfo

timepoints - Variable in class loci.formats.in.ZeissTIFFReader

times - Variable in class loci.formats.in.CellH5Reader

times - Variable in class loci.formats.in.LegacyQTReader

Time offset for each frame.

TIMESTAMP - Static variable in class loci.formats.FormatTools

TIMESTAMP - Static variable in class loci.formats.in.CellSensReader

timestamp - Variable in class loci.formats.in.GatanReader

timestamp - Variable in class loci.formats.in.InCellReader.InCellHandler

timestamp - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

timestamp - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

Timestamp - Class in ome.xml.model.primitives

Primitive type that represents an ISO 8601 timestamp.

Timestamp(String) - Constructor for class ome.xml.model.primitives.Timestamp

Timestamp(Instant) - Constructor for class ome.xml.model.primitives.Timestamp

Timestamp(DateTime) - Constructor for class ome.xml.model.primitives.Timestamp

timestamp - Variable in class ome.xml.model.primitives.Timestamp

TIMESTAMP_FORMAT - Static variable in class loci.common.DateTools

Human readable timestamp string

TIMESTAMP_FORMATTER - Static variable in class loci.common.DateTools

Human readable timestamp formatter.

TIMESTAMP_KEY - Static variable in class loci.formats.in.LiFlimReader

TimestampAnnotation - Class in ome.xml.model

TimestampAnnotation() - Constructor for class ome.xml.model.TimestampAnnotation

Default constructor.

TimestampAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.TimestampAnnotation

Constructs TimestampAnnotation recursively from an XML DOM tree.

TimestampAnnotation(TimestampAnnotation) - Constructor for class ome.xml.model.TimestampAnnotation

Copy constructor.

timestampAnnotations - Variable in class ome.xml.model.StructuredAnnotations

TimestampedLogFileAppender - Class in loci.tests.testng

A class for appending a timestamp to the log file name produced by the logging framework.

TimestampedLogFileAppender() - Constructor for class loci.tests.testng.TimestampedLogFileAppender

timestampFile - Variable in class loci.formats.in.VolocityReader.Stack

timestamps - Variable in class loci.formats.in.BaseZeissReader

timestamps - Variable in class loci.formats.in.CellWorxReader

timestamps - Variable in class loci.formats.in.LeicaReader

timestamps - Variable in class loci.formats.in.LiFlimReader

timestamps - Variable in class loci.formats.in.LIFReader

timestamps - Variable in class loci.formats.in.MetamorphHandler

timestamps - Variable in class loci.formats.in.MicromanagerReader.Position

timestamps - Variable in class loci.formats.in.PCIReader

timestamps - Variable in class loci.formats.in.VolocityReader

timestamps - Variable in class loci.formats.in.ZeissCZIReader

timestamps - Variable in class loci.formats.in.ZeissLSMReader

timeStampSeconds - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Time stamp in seconds since the experiment began.

TITAN_TAG - Static variable in class loci.formats.in.FEITiffReader

TITLE - Static variable in class loci.formats.gui.DataConverter

TITLE - Static variable in class loci.formats.gui.ImageViewer

TITLE - Static variable in class loci.formats.tools.EditTiffG

TJ - Class in org.libjpegturbo.turbojpeg

TurboJPEG utility class (cannot be instantiated)

TJ() - Constructor for class org.libjpegturbo.turbojpeg.TJ

TJCompressor - Class in org.libjpegturbo.turbojpeg

TurboJPEG compressor

TJCompressor() - Constructor for class org.libjpegturbo.turbojpeg.TJCompressor

Create a TurboJPEG compressor instance.

TJCompressor(byte[], int, int, int, int) - Constructor for class org.libjpegturbo.turbojpeg.TJCompressor

Create a TurboJPEG compressor instance and associate the uncompressed source image stored in srcImage with the newly-created instance.

TJCustomFilter - Interface in org.libjpegturbo.turbojpeg

Custom filter callback interface

TJDecompressor - Class in org.libjpegturbo.turbojpeg

TurboJPEG decompressor

TJDecompressor() - Constructor for class org.libjpegturbo.turbojpeg.TJDecompressor

Create a TurboJPEG decompresssor instance.

TJDecompressor(byte[]) - Constructor for class org.libjpegturbo.turbojpeg.TJDecompressor

Create a TurboJPEG decompressor instance and associate the JPEG image stored in jpegImage with the newly-created instance.

TJDecompressor(byte[], int) - Constructor for class org.libjpegturbo.turbojpeg.TJDecompressor

Create a TurboJPEG decompressor instance and associate the JPEG image of length imageSize bytes stored in jpegImage with the newly-created instance.

TJLoader - Class in org.libjpegturbo.turbojpeg

TJLoader() - Constructor for class org.libjpegturbo.turbojpeg.TJLoader

TJScalingFactor - Class in org.libjpegturbo.turbojpeg

Fractional scaling factor

TJScalingFactor(int, int) - Constructor for class org.libjpegturbo.turbojpeg.TJScalingFactor

TJTransform - Class in org.libjpegturbo.turbojpeg

Lossless transform parameters

TJTransform() - Constructor for class org.libjpegturbo.turbojpeg.TJTransform

Create a new lossless transform instance.

TJTransform(int, int, int, int, int, int, TJCustomFilter) - Constructor for class org.libjpegturbo.turbojpeg.TJTransform

Create a new lossless transform instance with the given parameters.

TJTransform(Rectangle, int, int, TJCustomFilter) - Constructor for class org.libjpegturbo.turbojpeg.TJTransform

Create a new lossless transform instance with the given parameters.

TJTransformer - Class in org.libjpegturbo.turbojpeg

TurboJPEG lossless transformer

TJTransformer() - Constructor for class org.libjpegturbo.turbojpeg.TJTransformer

Create a TurboJPEG lossless transformer instance.

TJTransformer(byte[]) - Constructor for class org.libjpegturbo.turbojpeg.TJTransformer

Create a TurboJPEG lossless transformer instance and associate the JPEG image stored in jpegImage with the newly-created instance.

TJTransformer(byte[], int) - Constructor for class org.libjpegturbo.turbojpeg.TJTransformer

Create a TurboJPEG lossless transformer instance and associate the JPEG image of length imageSize bytes stored in jpegImage with the newly-created instance.

tLabel - Variable in class loci.formats.gui.DataConverter

TLM - Static variable in interface jj2000.j2k.codestream.Markers

Tile-part lengths (TLM): 0xFF55

TLM_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for TLM marker segment found

TM - Static variable in class loci.formats.in.DicomReader

tmpImage - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

tmpLetter - Variable in class loci.formats.ResourceNamer

tnbytes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Number of bytes targeted to be read

tnsot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT

toArray() - Method in class loci.formats.tiff.OnDemandLongArray

toArray() - Method in class loci.poi.util.DoubleList

Returns an array containing all of the elements in this list in proper sequence.

toArray(double[]) - Method in class loci.poi.util.DoubleList

Returns an array containing all of the elements in this list in proper sequence.

toArray() - Method in class loci.poi.util.IntList

Returns an array containing all of the elements in this list in proper sequence.

toArray(int[]) - Method in class loci.poi.util.IntList

Returns an array containing all of the elements in this list in proper sequence.

toArray() - Method in class loci.poi.util.ShortList

Returns an array containing all of the elements in this list in proper sequence.

toArray(short[]) - Method in class loci.poi.util.ShortList

Returns an array containing all of the elements in this list in proper sequence.

toByteArray(byte[]) - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Returns the byte buffer data in a new array.

toByteArray(int, int, byte[], int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Copies the specified part of the stream to the 'outbuf' byte array.

toByteArray() - Method in class loci.formats.codec.BitWriter

Deprecated.

Gets an array containing all bits written thus far.

toByteArray() - Method in class loci.formats.codec.ByteVector

toBytes(BufferedImage, IFormatWriter) - Static method in class loci.formats.gui.BufferedImageWriter

toCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace

toCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

toCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

toCIEXYZ(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace

toCompress - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

toDebugString() - Method in class loci.poi.hssf.record.formula.Ptg

dump a debug representation (hexdump) to a string

toFloat(int, FloatProcessor) - Method in class loci.plugins.util.RecordedImageProcessor

toFormulaString(Workbook, List) - Static method in class loci.poi.hssf.model.FormulaParser

Convience method which takes in a list then passes it to the other toFormulaString signature.

toFormulaString(List) - Method in class loci.poi.hssf.model.FormulaParser

Convience method which takes in a list then passes it to the other toFormulaString signature.

toFormulaString(Workbook, Ptg[]) - Static method in class loci.poi.hssf.model.FormulaParser

Static method to convert an array of Ptgs in RPN order to a human readable string format in infix mode.

toFormulaString(Ptg[]) - Method in class loci.poi.hssf.model.FormulaParser

Static method to convert an array of Ptgs in RPN order to a human readable string format in infix mode.

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.AddPtg

Implementation of method from Ptg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.AddPtg

implementation of method from OperationsPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.Area3DPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.AreaErrPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.AreaNAPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.AreaNPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.AreaNVPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.AreaPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.ArrayPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.AttrPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.AttrPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.BoolPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.ConcatPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.ConcatPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.DividePtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.DividePtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.EqualPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.EqualPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.ErrPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.ExpPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Implementation of method from Ptg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Implementation of method from OperationsPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.IntersectionPtg

Implementation of method from Ptg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.IntersectionPtg

implementation of method from OperationsPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.IntPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.LessEqualPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.LessEqualPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.LessThanPtg

Implementation of method from Ptg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.LessThanPtg

Implementation of method from OperationsPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.MemAreaPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.MemErrPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.MemFuncPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.MissingArgPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.MultiplyPtg

toFormulaString(Ptg[]) - Method in class loci.poi.hssf.record.formula.MultiplyPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.MultiplyPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.NamePtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.NameXPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.NotEqualPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.NotEqualPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.NumberPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.OperationPtg

returns a string representation of the operations the length of the input array should equal the number returned by

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.PercentPtg

Implementation of method from Ptg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.PercentPtg

implementation of method from OperationsPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.PowerPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.PowerPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.Ptg

return a string representation of this token alone

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.RangePtg

Implementation of method from Ptg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.RangePtg

implementation of method from OperationsPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.Ref3DPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.ReferencePtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.RefErrorPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.RefNAPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.RefNPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.RefNVPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.StringPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.SubtractPtg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.SubtractPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

Implementation of method from Ptg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

implementation of method from OperationsPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

Implementation of method from Ptg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

implementation of method from OperationsPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.UnionPtg

Implementation of method from Ptg

toFormulaString(String[]) - Method in class loci.poi.hssf.record.formula.UnionPtg

implementation of method from OperationsPtg

toFormulaString(Workbook) - Method in class loci.poi.hssf.record.formula.UnknownPtg

toggleAnimation() - Method in class loci.plugins.util.DataBrowser

Toggles whether the data browser is animating.

toHex(byte[]) - Static method in class loci.poi.util.HexDump

Converts the parameter to a hex value.

toHex(short[]) - Static method in class loci.poi.util.HexDump

Converts the parameter to a hex value.

toHex(byte[], int) - Static method in class loci.poi.util.HexDump

Converts the parameter to a hex value breaking the results into lines.

toHex(short) - Static method in class loci.poi.util.HexDump

Converts the parameter to a hex value.

toHex(byte) - Static method in class loci.poi.util.HexDump

Converts the parameter to a hex value.

toHex(int) - Static method in class loci.poi.util.HexDump

Converts the parameter to a hex value.

toHex(long) - Static method in class loci.poi.util.HexDump

Converts the parameter to a hex value.

toHex(long, int) - Static method in class loci.poi.util.HexDump

toHex(byte[]) - Method in class mdbtools.tests.ColumnTest

toInputStream() - Method in class loci.poi.hpsf.MutablePropertySet

Returns the contents of this property set stream as an input stream.

toInputStream() - Method in class loci.poi.hpsf.SpecialPropertySet

toISO8859(byte[]) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

token - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

token(String, String, int) - Method in class loci.formats.in.PrairieMetadata

Gets the ith token of the given string, split according to the specific regular expression.

token_1_columns - Variable in class loci.poi.hssf.record.formula.ArrayPtg

token_2_rows - Variable in class loci.poi.hssf.record.formula.ArrayPtg

token_3_arrayValues - Variable in class loci.poi.hssf.record.formula.ArrayPtg

TOKEN_SEPARATOR - Static variable in class loci.formats.in.FakeReader

tokenize(String) - Method in class loci.formats.in.ICSReader

tokens - Variable in class loci.poi.hssf.model.FormulaParser

toLength(Double, boolean) - Method in class loci.formats.in.PrairieMetadata.Frame

Convert a position number to a length in the microscope reference frame.

TONE_COMPENSATION - Static variable in class loci.formats.in.NikonReader

TOO_MANY_TRIES - Static variable in class loci.plugins.util.LuraWave

tools - Variable in class loci.formats.in.LegacyQTReader

Instance of LegacyQTTools to handle QuickTime for Java detection.

tools - Variable in class loci.formats.out.LegacyQTWriter

Instance of LegacyQTTools to handle QuickTime for Java detection.

TOOLS - Static variable in class loci.formats.UpgradeChecker

Name of the ueber tools JAR.

toOMExmlColor(Color) - Static method in class loci.plugins.util.ROIHandler

Converts the Java Color into an OME-XML Color.

TOP_LEVEL_KEYS - Static variable in class loci.formats.in.NikonTiffReader

topDown - Variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

topHalfSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

topLeftQuarterSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

TopMargin - Static variable in class loci.poi.hssf.model.Sheet

TopMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

topMargin - Variable in class ome.jxr.parser.DatastreamParser

TopMarginRecord - Class in loci.poi.hssf.record

Record for the top margin.

TopMarginRecord() - Constructor for class loci.poi.hssf.record.TopMarginRecord

TopMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.TopMarginRecord

Constructs a TopMargin record and sets its fields appropriately.

TopometrixReader - Class in loci.formats.in

TopometrixReader is the file format reader for TopoMetrix .tfr, .ffr, .zfr, .zfp, and .2fl files.

TopometrixReader() - Constructor for class loci.formats.in.TopometrixReader

Constructs a new TopoMetrix reader.

topRightQuarterSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

toPrimitiveArray(List<Long>) - Method in class loci.formats.tiff.TiffSaver

Coverts a list to a primitive array.

topRow - Variable in class loci.poi.hssf.util.PaneInformation

toRGB(float, float, float, float[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFColorConverter

Converts a triple in the native color space of this TIFFColorConverter into an RGB triple, and stores the result in the first three entries of the rgb array.

toRGB(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace

toRGB(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

toRGB(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

toRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

toRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

toRGB(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace

TORR - Static variable in class ome.units.UNITS

toString() - Method in class jj2000.j2k.codestream.CBlkCoordInfo

Returns code-block's information in a String

toString() - Method in class jj2000.j2k.codestream.CoordInfo

Returns object's information in a String

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.COC

Display information found in this COC marker segment

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.COD

Display information found in this COD marker segment

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.COM

Display information found in the COM marker segment

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.CRG

Display information found in the CRG marker segment

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.POC

Display information found in this POC marker segment

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC

Display information found in this QCC marker segment

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD

Display information found in this QCD marker segment

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.RGN

Display information found in this RGN marker segment

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

Display information found in SIZ marker segment

toString() - Method in class jj2000.j2k.codestream.HeaderInfo.SOT

Display information found in this SOT marker segment

toString() - Method in class jj2000.j2k.codestream.PrecCoordInfo

Returns precinct's information in a String

toString() - Method in class jj2000.j2k.codestream.PrecInfo

Returns PrecInfo object information in a String

toString() - Method in class jj2000.j2k.codestream.reader.CBlkInfo

Object information in a string.

toString() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Print information about the current header.

toString() - Method in class jj2000.j2k.codestream.reader.PktInfo

Object information in a string.

toString() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Prints information about this object for debugging purposes

toString() - Method in class jj2000.j2k.entropy.CodedCBlk

Returns the contents of the object in a string.

toString() - Method in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

Object information in a string

toString() - Method in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Returns the contents of the object in a string.

toString() - Method in class jj2000.j2k.entropy.Progression

toString() - Method in class jj2000.j2k.image.DataBlk

Returns a string of informations about the DataBlk

toString() - Method in class jj2000.j2k.image.DataBlkFloat

Returns a string of informations about the DataBlkInt.

toString() - Method in class jj2000.j2k.image.DataBlkInt

Returns a string of informations about the DataBlkInt.

toString() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns a string with a descriptive text of which forward component transformation is used.

toString() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns a string of information about the object, more than 1 line long.

toString() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns a string of information about the object, more than 1 line long.

toString() - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns a string with a descriptive text of which inverse component transformation is used.

toString() - Method in class jj2000.j2k.image.Tiler

Returns a String object representing Tiler's informations

toString() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Returns a string of information about the file and the endianess

toString() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns a string of information about the file

toString() - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This function returns the relevant data of the mask generator

toString() - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

This function returns the relevant data of the mask generator

toString() - Method in class jj2000.j2k.roi.encoder.ROI

This function prints all relevant data for the ROI

toString() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Debugging method

toString() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Debugging method

toString() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Debugging method

toString() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Returns a string of informations about the DataBlk

toString() - Method in class jj2000.j2k.wavelet.Subband

Returns subband informations in a string.

toString() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns a string of information about the synthesis wavelet filter

toString() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns a string of information about the synthesis wavelet filter

toString() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Debugging method

toString() - Method in class loci.common.Location

toString() - Method in class loci.common.Region

toString() - Method in exception loci.common.services.DependencyException

toString() - Method in class loci.common.StatusEvent

toString() - Method in class loci.formats.cache.CacheEvent

toString() - Method in class loci.formats.CoreMetadata

toString() - Method in class loci.formats.FileInfo

toString() - Method in class loci.formats.gui.ComboFileFilter

Gets a string representation of this file filter.

toString() - Method in class loci.formats.gui.ExtensionFileFilter

Gets a string representation of this file filter.

toString() - Method in class loci.formats.gui.FormatFileFilter

Gets a string representation of this file filter.

toString() - Method in class loci.formats.gui.NoExtensionFileFilter

Gets a string representation of this file filter.

toString(boolean) - Method in class loci.formats.gui.XMLCellRenderer.XMLItem

toString() - Method in class loci.formats.gui.XMLCellRenderer.XMLItem

Allows copy and paste from tree component.

toString() - Method in class loci.formats.in.BaseZeissReader.Layer

toString() - Method in class loci.formats.in.BaseZeissReader.Shape

toString() - Method in class loci.formats.in.BaseZeissReader.Tag

toString() - Method in class loci.formats.in.BioRadReader.Note

toString() - Method in class loci.formats.in.CellH5Reader.CellH5Coordinate

toString() - Method in class loci.formats.in.CellSensReader.TileCoordinate

toString() - Method in class loci.formats.in.CellVoyagerReader.AreaInfo

toString() - Method in class loci.formats.in.CellVoyagerReader.ChannelInfo

toString() - Method in class loci.formats.in.CellVoyagerReader.FieldInfo

toString() - Method in class loci.formats.in.CellVoyagerReader.WellInfo

toString() - Method in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Helper function which overrides toString, printing out the values in the header section.

toString() - Method in class loci.formats.in.IM3Reader.IM3Record

toString() - Method in class loci.formats.in.PrairieMetadata.ValueItem

toString() - Method in class loci.formats.in.ZeissCZIReader.Coordinate

toString() - Method in class loci.formats.in.ZeissTIFFHandler.Plane

toString() - Method in class loci.formats.in.ZeissTIFFHandler.Scaling

toString() - Method in class loci.formats.in.ZeissTIFFHandler.Tag

toString() - Method in class loci.formats.in.ZeissTIFFHandler.TagSet

toString() - Method in class loci.formats.in.ZeissTIFFHandler

toString() - Method in class loci.formats.in.ZeissTIFFReader.Plane

toString() - Method in class loci.formats.tiff.TiffIFDEntry

toString() - Method in class loci.formats.tiff.TiffRational

Returns a string representation of the object.

toString() - Method in class loci.formats.tools.AmiraParameters

toString(Map, String) - Static method in class loci.formats.tools.AmiraParameters

toString() - Method in class loci.formats.tools.AsciiImage

toString() - Method in class loci.plugins.config.FormatEntry

toString() - Method in class loci.plugins.config.LibraryEntry

toString() - Method in class loci.plugins.in.ImporterMetadata

toString() - Method in class loci.plugins.util.RecordedImageProcessor

toString() - Method in class loci.poi.ddf.EscherArrayProperty

toString() - Method in class loci.poi.ddf.EscherBitmapBlip

toString() - Method in class loci.poi.ddf.EscherBlipRecord

toString() - Method in class loci.poi.ddf.EscherBlipWMFRecord

The string representation of this record.

toString() - Method in class loci.poi.ddf.EscherBSERecord

Calculate the string representation of this object

toString() - Method in class loci.poi.ddf.EscherChildAnchorRecord

The string representation of this record

toString() - Method in class loci.poi.ddf.EscherClientAnchorRecord

Returns the string representation for this record.

toString() - Method in class loci.poi.ddf.EscherClientDataRecord

Returns the string representation of this record.

toString() - Method in class loci.poi.ddf.EscherComplexProperty

Retrieves the string representation for this property.

toString() - Method in class loci.poi.ddf.EscherContainerRecord

toString() - Method in class loci.poi.ddf.EscherDggRecord

toString() - Method in class loci.poi.ddf.EscherDgRecord

Returns the string representation of this record.

toString() - Method in class loci.poi.ddf.EscherMetafileBlip

toString() - Method in class loci.poi.ddf.EscherOptRecord

Retrieve the string representation of this record.

toString() - Method in class loci.poi.ddf.EscherPictBlip

toString() - Method in class loci.poi.ddf.EscherRecord.EscherRecordHeader

toString() - Method in class loci.poi.ddf.EscherSimpleProperty

toString() - Method in class loci.poi.ddf.EscherSpgrRecord

toString() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

toString() - Method in class loci.poi.ddf.EscherSpRecord

toString() - Method in class loci.poi.ddf.EscherTextboxRecord

toString() - Method in class loci.poi.ddf.UnknownEscherRecord

toString() - Method in class loci.poi.hpsf.ClassID

Returns a human-readable representation of the Class ID in standard format "{xxxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxxx}".

toString() - Method in class loci.poi.hpsf.Property

toString() - Method in class loci.poi.hpsf.PropertySet

toString() - Method in class loci.poi.hpsf.Section.PropertyListEntry

toString() - Method in class loci.poi.hpsf.Section

toString() - Method in class loci.poi.hpsf.SpecialPropertySet

toString(Throwable) - Static method in class loci.poi.hpsf.Util

Returns a textual representation of a Throwable, including a stacktrace.

toString() - Method in class loci.poi.hssf.model.FormulaParser

toString on the parser instance returns the RPN ordered list of tokens Useful for testing

toString() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

toString() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

toString() - Method in class loci.poi.hssf.record.AreaFormatRecord

toString() - Method in class loci.poi.hssf.record.AreaRecord

toString() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

toString() - Method in class loci.poi.hssf.record.AxisOptionsRecord

toString() - Method in class loci.poi.hssf.record.AxisParentRecord

toString() - Method in class loci.poi.hssf.record.AxisRecord

toString() - Method in class loci.poi.hssf.record.AxisUsedRecord

toString() - Method in class loci.poi.hssf.record.BackupRecord

toString() - Method in class loci.poi.hssf.record.BarRecord

toString() - Method in class loci.poi.hssf.record.BeginRecord

toString() - Method in class loci.poi.hssf.record.BlankRecord

toString() - Method in class loci.poi.hssf.record.BOFRecord

toString() - Method in class loci.poi.hssf.record.BookBoolRecord

toString() - Method in class loci.poi.hssf.record.BoolErrRecord

toString() - Method in class loci.poi.hssf.record.BottomMarginRecord

toString() - Method in class loci.poi.hssf.record.BoundSheetRecord

toString() - Method in class loci.poi.hssf.record.CalcCountRecord

toString() - Method in class loci.poi.hssf.record.CalcModeRecord

toString() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

toString() - Method in class loci.poi.hssf.record.ChartFormatRecord

toString() - Method in class loci.poi.hssf.record.ChartRecord

toString() - Method in class loci.poi.hssf.record.CodepageRecord

toString() - Method in class loci.poi.hssf.record.ColumnInfoRecord

toString() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

toString() - Method in class loci.poi.hssf.record.ContinueRecord

Debugging toString

toString() - Method in class loci.poi.hssf.record.CountryRecord

toString(StringBuffer) - Method in interface loci.poi.hssf.record.CustomField

Appends the string representation of this field to the supplied StringBuffer.

toString() - Method in class loci.poi.hssf.record.DataFormatRecord

toString() - Method in class loci.poi.hssf.record.DateWindow1904Record

toString() - Method in class loci.poi.hssf.record.DatRecord

toString() - Method in class loci.poi.hssf.record.DBCellRecord

toString() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

toString() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

toString() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

toString() - Method in class loci.poi.hssf.record.DeltaRecord

toString() - Method in class loci.poi.hssf.record.DimensionsRecord

toString() - Method in class loci.poi.hssf.record.DSFRecord

toString() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

toString() - Method in class loci.poi.hssf.record.EndRecord

toString() - Method in class loci.poi.hssf.record.EndSubRecord

toString() - Method in class loci.poi.hssf.record.EOFRecord

toString() - Method in class loci.poi.hssf.record.EscherAggregate

Calculates the string representation of this record.

toString() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

toString() - Method in class loci.poi.hssf.record.ExternSheetRecord

toString() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

toString() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

toString() - Method in class loci.poi.hssf.record.ExtSSTRecord

toString() - Method in class loci.poi.hssf.record.FilePassRecord

toString() - Method in class loci.poi.hssf.record.FileSharingRecord

toString() - Method in class loci.poi.hssf.record.FnGroupCountRecord

toString() - Method in class loci.poi.hssf.record.FontBasisRecord

toString() - Method in class loci.poi.hssf.record.FontIndexRecord

toString() - Method in class loci.poi.hssf.record.FontRecord

toString() - Method in class loci.poi.hssf.record.FooterRecord

toString() - Method in class loci.poi.hssf.record.FormatRecord

toString() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

toString() - Method in class loci.poi.hssf.record.formula.Area3DPtg

toString() - Method in class loci.poi.hssf.record.formula.AreaErrPtg

toString() - Method in class loci.poi.hssf.record.formula.AreaPtg

toString() - Method in class loci.poi.hssf.record.formula.ArrayPtg

toString() - Method in class loci.poi.hssf.record.formula.AttrPtg

toString() - Method in class loci.poi.hssf.record.formula.ExpPtg

toString() - Method in class loci.poi.hssf.record.formula.FuncPtg

toString() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

toString() - Method in class loci.poi.hssf.record.formula.Ptg

Overridden toString method to ensure object hash is not printed.

toString() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

toString() - Method in class loci.poi.hssf.record.formula.ReferencePtg

toString() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

toString() - Method in class loci.poi.hssf.record.FormulaRecord

toString() - Method in class loci.poi.hssf.record.FrameRecord

toString() - Method in class loci.poi.hssf.record.GridsetRecord

toString() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

toString() - Method in class loci.poi.hssf.record.GutsRecord

toString() - Method in class loci.poi.hssf.record.HCenterRecord

toString() - Method in class loci.poi.hssf.record.HeaderRecord

toString() - Method in class loci.poi.hssf.record.HideObjRecord

toString() - Method in class loci.poi.hssf.record.IndexRecord

toString() - Method in class loci.poi.hssf.record.InterfaceEndRecord

toString() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

toString() - Method in class loci.poi.hssf.record.IterationRecord

toString() - Method in class loci.poi.hssf.record.LabelRecord

toString() - Method in class loci.poi.hssf.record.LabelSSTRecord

toString() - Method in class loci.poi.hssf.record.LeftMarginRecord

toString() - Method in class loci.poi.hssf.record.LegendRecord

toString() - Method in class loci.poi.hssf.record.LineFormatRecord

toString(StringBuffer) - Method in class loci.poi.hssf.record.LinkedDataFormulaField

toString() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

toString() - Method in class loci.poi.hssf.record.LinkedDataRecord

toString() - Method in class loci.poi.hssf.record.MergeCellsRecord

toString() - Method in class loci.poi.hssf.record.MMSRecord

toString() - Method in class loci.poi.hssf.record.MulBlankRecord

toString() - Method in class loci.poi.hssf.record.MulRKRecord

toString() - Method in class loci.poi.hssf.record.NameRecord

toString() - Method in class loci.poi.hssf.record.NoteRecord

Convert this record to string.

toString() - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Convert this record to string.

toString() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

toString() - Method in class loci.poi.hssf.record.NumberRecord

toString() - Method in class loci.poi.hssf.record.ObjectLinkRecord

toString() - Method in class loci.poi.hssf.record.ObjectProtectRecord

toString() - Method in class loci.poi.hssf.record.ObjRecord

toString() - Method in class loci.poi.hssf.record.PageBreakRecord

toString() - Method in class loci.poi.hssf.record.PaletteRecord

toString() - Method in class loci.poi.hssf.record.PaneRecord

toString() - Method in class loci.poi.hssf.record.PasswordRecord

toString() - Method in class loci.poi.hssf.record.PasswordRev4Record

toString() - Method in class loci.poi.hssf.record.PColor

toString() - Method in class loci.poi.hssf.record.PlotAreaRecord

toString() - Method in class loci.poi.hssf.record.PlotGrowthRecord

toString() - Method in class loci.poi.hssf.record.PrecisionRecord

toString() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

toString() - Method in class loci.poi.hssf.record.PrintHeadersRecord

toString() - Method in class loci.poi.hssf.record.PrintSetupRecord

toString() - Method in class loci.poi.hssf.record.ProtectionRev4Record

toString() - Method in class loci.poi.hssf.record.ProtectRecord

toString() - Method in class loci.poi.hssf.record.RecalcIdRecord

toString() - Method in class loci.poi.hssf.record.Record

get a string representation of the record (for biffview/debugging)

toString() - Method in class loci.poi.hssf.record.RefModeRecord

toString() - Method in class loci.poi.hssf.record.RefreshAllRecord

toString() - Method in class loci.poi.hssf.record.RightMarginRecord

toString() - Method in class loci.poi.hssf.record.RKRecord

toString() - Method in class loci.poi.hssf.record.RowRecord

toString() - Method in class loci.poi.hssf.record.SaveRecalcRecord

toString() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

toString() - Method in class loci.poi.hssf.record.SCLRecord

toString() - Method in class loci.poi.hssf.record.SelectionRecord

toString() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

toString() - Method in class loci.poi.hssf.record.SeriesIndexRecord

toString() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

toString() - Method in class loci.poi.hssf.record.SeriesListRecord

toString() - Method in class loci.poi.hssf.record.SeriesRecord

toString() - Method in class loci.poi.hssf.record.SeriesTextRecord

toString() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

toString() - Method in class loci.poi.hssf.record.SharedFormulaRecord

print a sort of string representation ([SHARED FORMULA RECORD] id = x [/SHARED FORMULA RECORD])

toString() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

toString() - Method in class loci.poi.hssf.record.SSTRecord

Return a debugging string representation

toString() - Method in class loci.poi.hssf.record.StringRecord

toString() - Method in class loci.poi.hssf.record.StyleRecord

toString() - Method in class loci.poi.hssf.record.SupBookRecord

toString() - Method in class loci.poi.hssf.record.TabIdRecord

toString() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

toString() - Method in class loci.poi.hssf.record.TextObjectRecord

toString() - Method in class loci.poi.hssf.record.TextRecord

toString() - Method in class loci.poi.hssf.record.TickRecord

toString() - Method in class loci.poi.hssf.record.TopMarginRecord

toString() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

toString() - Method in class loci.poi.hssf.record.UnicodeString

unlike the real records we return the same as "getString()" rather than debug info

toString() - Method in class loci.poi.hssf.record.UnitsRecord

toString() - Method in class loci.poi.hssf.record.UnknownRecord

print a sort of string representation ([UNKNOWN RECORD] id = x [/UNKNOWN RECORD])

toString() - Method in class loci.poi.hssf.record.UseSelFSRecord

toString() - Method in class loci.poi.hssf.record.ValueRangeRecord

toString() - Method in class loci.poi.hssf.record.VCenterRecord

toString() - Method in class loci.poi.hssf.record.WindowOneRecord

toString() - Method in class loci.poi.hssf.record.WindowProtectRecord

toString() - Method in class loci.poi.hssf.record.WindowTwoRecord

toString() - Method in class loci.poi.hssf.record.WriteAccessRecord

toString() - Method in class loci.poi.hssf.record.WriteProtectRecord

toString() - Method in class loci.poi.hssf.record.WSBoolRecord

toString() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

toString() - Method in class loci.poi.hssf.usermodel.HSSFCell

Returns a string representation of the cell This method returns a simple representation, anthing more complex should be in user code, with knowledge of the semantics of the sheet being processed.

toString() - Method in class loci.poi.hssf.usermodel.HSSFFont

toString() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

toString() - Method in class loci.poi.hssf.util.AreaReference

toString() - Method in class loci.poi.hssf.util.CellReference

toString() - Method in class loci.poi.poifs.filesystem.DocumentDescriptor

toString() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

Returns a string representation of the path.

toString() - Method in class loci.poi.util.ByteField

return the value as a String

toString() - Method in interface loci.poi.util.FixedField

return the value as a String

toString() - Method in class loci.poi.util.IntegerField

return the value as a String

toString() - Method in class loci.poi.util.LongField

return the value as a String

toString() - Method in class loci.poi.util.ShortField

return the value as a String

toString() - Method in class mdbtools.dbengine.sql.Condition

toString(Select) - Method in class mdbtools.dbengine.sql.Condition

toString() - Method in class mdbtools.dbengine.sql.Equation

toString(Select) - Method in class mdbtools.dbengine.sql.Equation

toString() - Method in class mdbtools.dbengine.sql.FQColumn

toString(Select) - Method in class mdbtools.dbengine.sql.FQColumn

toString() - Method in class mdbtools.dbengine.sql.FunctionDef

toString(Select) - Method in class mdbtools.dbengine.sql.FunctionDef

toString() - Method in class mdbtools.dbengine.sql.Join

toString(Select) - Method in class mdbtools.dbengine.sql.Join

toString(Select) - Method in class mdbtools.dbengine.sql.OrderBy

toString() - Method in class mdbtools.dbengine.sql.Select

toString(Select, Object) - Static method in class mdbtools.dbengine.sql.Util

easy way to call toString(Select) (if needed) on any object also quotes strings and expands out arrays

toString() - Method in class mdbtools.dbengine.Tests.SimpleDataSourceTable

toString() - Method in class ome.jxr.ifd.IFDContainer

toString() - Method in class ome.jxr.JXRReader

toString() - Method in class ome.jxr.parser.IFDParser

toString() - Method in class ome.units.quantity.Angle

toString() - Method in class ome.units.quantity.ElectricPotential

toString() - Method in class ome.units.quantity.Frequency

toString() - Method in class ome.units.quantity.Length

toString() - Method in class ome.units.quantity.Power

toString() - Method in class ome.units.quantity.Pressure

toString() - Method in class ome.units.quantity.Temperature

toString() - Method in class ome.units.quantity.Time

toString() - Method in enum ome.xml.model.enums.AcquisitionMode

toString() - Method in enum ome.xml.model.enums.ArcType

toString() - Method in enum ome.xml.model.enums.Binning

toString() - Method in enum ome.xml.model.enums.Compression

toString() - Method in enum ome.xml.model.enums.ContrastMethod

toString() - Method in enum ome.xml.model.enums.Correction

toString() - Method in enum ome.xml.model.enums.DetectorType

toString() - Method in enum ome.xml.model.enums.DimensionOrder

toString() - Method in enum ome.xml.model.enums.ExperimentType

toString() - Method in enum ome.xml.model.enums.FilamentType

toString() - Method in enum ome.xml.model.enums.FillRule

toString() - Method in enum ome.xml.model.enums.FilterType

toString() - Method in enum ome.xml.model.enums.FontFamily

toString() - Method in enum ome.xml.model.enums.FontStyle

toString() - Method in enum ome.xml.model.enums.IlluminationType

toString() - Method in enum ome.xml.model.enums.Immersion

toString() - Method in enum ome.xml.model.enums.LaserMedium

toString() - Method in enum ome.xml.model.enums.LaserType

toString() - Method in enum ome.xml.model.enums.LineCap

toString() - Method in enum ome.xml.model.enums.Marker

toString() - Method in enum ome.xml.model.enums.Medium

toString() - Method in enum ome.xml.model.enums.MicrobeamManipulationType

toString() - Method in enum ome.xml.model.enums.MicroscopeType

toString() - Method in enum ome.xml.model.enums.NamingConvention

toString() - Method in enum ome.xml.model.enums.PixelType

toString() - Method in enum ome.xml.model.enums.Pulse

toString() - Method in enum ome.xml.model.enums.UnitsElectricPotential

toString() - Method in enum ome.xml.model.enums.UnitsFrequency

toString() - Method in enum ome.xml.model.enums.UnitsLength

toString() - Method in enum ome.xml.model.enums.UnitsPower

toString() - Method in enum ome.xml.model.enums.UnitsPressure

toString() - Method in enum ome.xml.model.enums.UnitsTemperature

toString() - Method in enum ome.xml.model.enums.UnitsTime

toString() - Method in class ome.xml.model.MapPair

toString() - Method in class ome.xml.model.primitives.PrimitiveType

toString() - Method in class ome.xml.model.primitives.Timestamp

toStringMainHeader() - Method in class jj2000.j2k.codestream.HeaderInfo

Display information found in the different marker segments of the main header

toStringThNoSOT(int, int) - Method in class jj2000.j2k.codestream.HeaderInfo

Returns information found in the tile-part headers of a given tile exception the SOT marker segment.

toStringTileHeader(int, int) - Method in class jj2000.j2k.codestream.HeaderInfo

Returns information found in the tile-part headers of a given tile.

totalBlocks - Variable in class loci.formats.codec.RPZACodec

totalChannels - Variable in class loci.formats.in.InCellReader

totalImages - Variable in class loci.formats.in.InCellReader

totalLength - Variable in class com.sun.media.imageio.stream.SectorStreamSegmentMapper

totAllTileLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Total length of all tile parts in all tiles

totalPixels - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

totalROIs - Variable in class loci.formats.in.ZeissLSMReader

totbrate - Variable in class jj2000.j2k.entropy.encoder.LayersInfo

The overall target bitrate, for the whole bit stream

ToTile(int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

ToTile(int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

totlyrs - Variable in class jj2000.j2k.entropy.encoder.LayersInfo

The total number of layers

totTileHeadLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Total length of tiles' header

totTileLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Total length of each tile

totTileParts - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The total number of tile-parts in each tile

totTilePartsRead - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Thetotal number of tile-parts read so far

toURL() - Method in class loci.common.Location

Return the URL corresponding to this pathname.

toXMLAnnotation() - Method in class loci.formats.Modulo

tp - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

TP_HEAD_LEN - Static variable in class jj2000.j2k.util.CodestreamManipulator

The length of a SOT plus a SOD marker

tPool - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The pool of threads, for the threaded implementation.

tpsot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT

tptot - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

tQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The tile in which the ncb quit condition was reached

TRACK_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader

TRACK_TIME_BETWEEN_STACKS - Static variable in class loci.formats.in.ZeissLSMReader

trans - Variable in class loci.poi.hssf.usermodel.EscherGraphics2d

transColor - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

TRANSFER_FUNCTION - Static variable in class loci.formats.tiff.IFD

TRANSFER_RANGE - Static variable in class loci.formats.tiff.IFD

TRANSFER_SYNTAX_UID - Static variable in class loci.formats.in.DicomReader

transform(File, File, File) - Static method in class loci.poi.dev.RecordGenerator

Executes an XSL transformation.

transform(AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

transform(AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

transform - Variable in class ome.xml.model.Shape

transform(byte[][], TJTransform[], int) - Method in class org.libjpegturbo.turbojpeg.TJTransformer

Losslessly transform the JPEG image associated with this transformer instance into one or more JPEG images stored in the given destination buffers.

transform(TJTransform[], int) - Method in class org.libjpegturbo.turbojpeg.TJTransformer

Losslessly transform the JPEG image associated with this transformer instance and return an array of TJDecompressor instances, each of which has a transformed JPEG image associated with it.

transform(byte[], int, byte[][], TJTransform[], int) - Method in class org.libjpegturbo.turbojpeg.TJTransformer

TRANSFORM__ROTATION - Static variable in class loci.poi.ddf.EscherProperties

transformAcquisitionMode(String) - Method in class loci.formats.in.InveonReader

transformBedControl(String) - Method in class loci.formats.in.InveonReader

transformBedMotion(String) - Method in class loci.formats.in.InveonReader

transformCTProjectionInterpolation(String) - Method in class loci.formats.in.InveonReader

transformCTWarping(String) - Method in class loci.formats.in.InveonReader

transformedSizes - Variable in class org.libjpegturbo.turbojpeg.TJTransformer

transformEventType(String) - Method in class loci.formats.in.InveonReader

transformFactory - Static variable in class loci.common.xml.XMLTools

transformFileType(String) - Method in class loci.formats.in.InveonReader

transformFilter(String) - Method in class loci.formats.in.InveonReader

transformGantryRotation(String) - Method in class loci.formats.in.InveonReader

transformModality(String) - Method in class loci.formats.in.InveonReader

transformModalityConfiguration(String) - Method in class loci.formats.in.InveonReader

transformModel(String) - Method in class loci.formats.in.InveonReader

transformNormalizationApplied(String) - Method in class loci.formats.in.InveonReader

transformReconAlgorithm(String) - Method in class loci.formats.in.InveonReader

transformRegistrationAvailable(String) - Method in class loci.formats.in.InveonReader

transformRotationDirection(String) - Method in class loci.formats.in.InveonReader

transformSubjectLengthUnits(String) - Method in class loci.formats.in.InveonReader

transformSubjectOrientation(String) - Method in class loci.formats.in.InveonReader

transformSubjectWeightUnits(String) - Method in class loci.formats.in.InveonReader

transformToLatestVersion(String) - Method in interface loci.formats.services.OMEXMLService

Transforms the given OME-XML string to the latest supported version of of the OME-XML schema.

transformToLatestVersion(String) - Method in class loci.formats.services.OMEXMLServiceImpl

transformXML(String, Templates) - Static method in class loci.common.xml.XMLTools

Transforms the given XML string using the specified XSLT stylesheet.

transformXML(Source, Templates) - Static method in class loci.common.xml.XMLTools

Transforms the given XML data using the specified XSLT stylesheet.

transfType - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

The type of the current component transformation JPEG 2000 part I only support NONE, FORW_RCT and FORW_ICT types

transfType - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

The type of the current component transformation JPEG 2000 part I only support NONE, FORW_RCT and FORW_ICT types

transIndex - Variable in class loci.formats.in.GIFReader

Transparent color index.

translate(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

translate(double, double) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

translate(int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

translate(int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

translate(double, double) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

translate(int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

translateAttachmentNodes(Element, int) - Method in class loci.formats.in.LIFReader

translateBuiltInName(byte) - Method in class loci.poi.hssf.record.NameRecord

Creates a human readable name for built in types

translateDetectors(Element, int) - Method in class loci.formats.in.LIFReader

translateDisplaySettings(Element) - Method in class loci.formats.in.ZeissCZIReader

translateExperiment(Element) - Method in class loci.formats.in.ZeissCZIReader

translateFilterSettings(Element, int) - Method in class loci.formats.in.LIFReader

translateHardwareSettings(Element) - Method in class loci.formats.in.ZeissCZIReader

translateImageNames(Element, int) - Method in class loci.formats.in.LIFReader

translateImageNodes(Element, int) - Method in class loci.formats.in.LIFReader

translateInformation(Element) - Method in class loci.formats.in.ZeissCZIReader

translateLaserLines(Element, int) - Method in class loci.formats.in.LIFReader

translateLayers(Element) - Method in class loci.formats.in.ZeissCZIReader

translateMetadata(Element) - Method in class loci.formats.in.LIFReader

translateMetadata(String) - Method in class loci.formats.in.ZeissCZIReader

translateROIs(Element, int) - Method in class loci.formats.in.LIFReader

translateScaling(Element) - Method in class loci.formats.in.ZeissCZIReader

translateScannerSettings(Element, int) - Method in class loci.formats.in.LIFReader

translateSingleROIs(Element, int) - Method in class loci.formats.in.LIFReader

translateTimestamps(Element, int) - Method in class loci.formats.in.LIFReader

transmittance - Variable in class ome.xml.model.TransmittanceRange

transmittanceRange - Variable in class ome.xml.model.Filter

TransmittanceRange - Class in ome.xml.model

TransmittanceRange() - Constructor for class ome.xml.model.TransmittanceRange

Default constructor.

TransmittanceRange(Element, OMEModel) - Constructor for class ome.xml.model.TransmittanceRange

Constructs TransmittanceRange recursively from an XML DOM tree.

TransmittanceRange(TransmittanceRange) - Constructor for class ome.xml.model.TransmittanceRange

Copy constructor.

transparency - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

transparency - Variable in class loci.formats.in.GIFReader

Use transparent color.

TRANSPARENCY_ID - Static variable in class loci.formats.in.CellSensReader

TRANSPARENCY_VALUE - Static variable in class loci.formats.in.CellSensReader

transparentColorFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

transparentColorIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

transX - Variable in class loci.formats.in.LeicaHandler.ROI

transX - Variable in class loci.formats.in.LIFReader.ROI

transY - Variable in class loci.formats.in.LeicaHandler.ROI

transY - Variable in class loci.formats.in.LIFReader.ROI

trate - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Target decoding rate in bpp

treeS - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder

The tag tree state.

treeS - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The tag tree state.

treeSbak - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The saved tag tree state.

treeV - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder

The tag tree values.

treeV - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The tag tree values.

treeVbak - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The saved tag tree values.

TrestleReader - Class in loci.formats.in

TrestleReader is the file format reader for Trestle slide datasets.

TrestleReader() - Constructor for class loci.formats.in.TrestleReader

Constructs a new Trestle reader.

trigger - Variable in class loci.formats.in.SDTInfo

trimFlexbitsFlag - Variable in class ome.jxr.parser.DatastreamParser

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.AQUA

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.BLACK

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.BROWN

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.CORAL

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.GOLD

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.GREEN

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.INDIGO

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.LAVENDER

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.LIME

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.MAROON

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.ORANGE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.ORCHID

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.PINK

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.RED

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.ROSE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.TAN

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.WHITE

triplet - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW

TRUE - Static variable in class loci.poi.hssf.record.UseSelFSRecord

TRUE_ALPHA - Static variable in class loci.formats.in.APNGReader

TRUE_COLOR - Static variable in class loci.formats.in.APNGReader

trueSizeX - Variable in class loci.formats.in.NativeND2Reader

trueSizeY - Variable in class loci.formats.in.NativeND2Reader

trueSizeZ - Variable in class loci.formats.in.NativeND2Reader

truncatedFileFlag - Variable in class loci.formats.in.DeltavisionReader

truncDists - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The distortion for each truncation point (valid and non-valid ones)

truncIdxs - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The indices of the valid truncation points, in increasing order.

truncIdxs - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

6D Array containing the indices of the truncation points.

truncRates - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The rate (in bytes) for each truncation point (valid and non-valid ones)

truncSlopes - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The negative of the rate-distortion slope for each valid truncation point

TRUNK - Static variable in class loci.plugins.Updater

TRUNK_BUILD - Static variable in class loci.formats.UpgradeChecker

Location of the JAR artifacts for Bio-Formats' trunk build.

ts - Variable in class loci.formats.in.ND2Handler

tScroll - Variable in class loci.plugins.util.DataBrowser

tSize - Variable in class loci.formats.in.DeltavisionReader

Size of one time element in the extended header.

tsLengths - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The length of each terminated segment.

tSlider - Variable in class loci.formats.gui.ImageViewer

tsT - Variable in class loci.formats.in.NativeND2Reader

tStep - Variable in class loci.plugins.in.ImporterOptions

tSteps - Variable in class loci.formats.in.LIFReader

tt - Variable in class loci.common.CBZip2InputStream.Data

ttIncl - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Tag tree used to read inclusion informations in packet's head: 1st dim: component index. 2nd dim: resolution level index. 3rd dim: precinct index. 4th dim: subband index.

ttIncl - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The tag tree for inclusion information.

ttMaxBP - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Tag tree used to read bit-depth information in packet's head: 1st dim: component index. 2nd dim: resolution level index. 3rd dim: precinct index. 4th dim: subband index.

ttMaxBP - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The tag tree for the maximum significant bit-plane.

tts - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The termination type specifications

ttype - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The termination type to use.

tType - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The MQ termination type to use in compression

tType - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The termination type for each tile-component

tuneable - Variable in class ome.xml.model.Laser

TWO - Static variable in class loci.formats.AxisGuesser

twoBitBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

TwoChannelColorSpace - Class in loci.formats.gui

ColorSpace for 2-channel images.

TwoChannelColorSpace(int, int) - Constructor for class loci.formats.gui.TwoChannelColorSpace

twoDCodes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

tx - Variable in class jj2000.j2k.image.Tiler

The horizontal index of the current tile

txo - Variable in class loci.poi.hssf.usermodel.HSSFComment

ty - Variable in class jj2000.j2k.image.Tiler

The vertical index of the current tile

type - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField

The tag type.

type - Variable in class com.sun.media.imageio.stream.RawImageInputStream

The image type for all the images in the stream.

type - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

type - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

type - Variable in class jj2000.j2k.entropy.Progression

Progression type as defined in ProgressionType interface

type - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

type - Variable in class loci.formats.cache.CacheEvent

Type of cache event.

type - Variable in class loci.formats.in.APNGReader.PNGBlock

type - Variable in class loci.formats.in.AVIReader

type - Variable in class loci.formats.in.BaseZeissReader.Shape

type - Variable in class loci.formats.in.BioRadReader.Note

type - Variable in class loci.formats.in.IM3Reader.IM3Record

type - Variable in class loci.formats.in.LeicaHandler.Detector

type - Variable in class loci.formats.in.LeicaHandler.ROI

type - Variable in class loci.formats.in.LIFReader.ROI

type - Variable in class loci.formats.in.PrairieMetadata.Sequence

type attribute of this <Sequence>.

type - Variable in class loci.formats.in.ZeissLSMReader.Laser

type - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

type - Variable in class loci.formats.Modulo

type - Variable in class loci.formats.tiff.TiffIFDEntry

The field Type.

type - Variable in class loci.plugins.config.ConfigWindow

type - Variable in class loci.plugins.config.LibraryEntry

type - Variable in class loci.poi.ddf.EscherPropertyMetaData

type - Variable in class loci.poi.hpsf.Property

The property's type.

type - Variable in class mdbtools.dbengine.sql.Join

type - Variable in class ome.xml.model.Arc

type - Variable in class ome.xml.model.Detector

type - Variable in class ome.xml.model.Experiment

type - Variable in class ome.xml.model.Filament

type - Variable in class ome.xml.model.Filter

type - Variable in class ome.xml.model.Laser

type - Variable in class ome.xml.model.MicrobeamManipulation

type - Variable in class ome.xml.model.Microscope

type - Variable in class ome.xml.model.Pixels

type - Variable in class ome.xml.model.Screen

type - Variable in class ome.xml.model.Well

TYPE_ARRAY - Static variable in class loci.poi.ddf.EscherPropertyMetaData

TYPE_ASCII - Static variable in class loci.formats.in.ZeissLSMReader

TYPE_BINARY - Static variable in class loci.poi.hssf.record.formula.OperationPtg

TYPE_BOOLEAN - Static variable in class loci.formats.in.ZeissLSMReader

TYPE_BOOLEAN - Static variable in class loci.plugins.prefs.OptionsList

String indicating option is of type boolean.

TYPE_BOOLEAN - Static variable in class loci.poi.ddf.EscherPropertyMetaData

TYPE_BOTTOM - Static variable in class loci.poi.hssf.record.LegendRecord

TYPE_BYTE - Static variable in class jj2000.j2k.image.DataBlk

The identifier for the byte data type, as signed 8 bits.

TYPE_CHART - Static variable in class loci.poi.hssf.record.BOFRecord

TYPE_CORNER - Static variable in class loci.poi.hssf.record.LegendRecord

TYPE_DATE - Static variable in class loci.formats.in.ZeissLSMReader

TYPE_EXCEL_4_MACRO - Static variable in class loci.poi.hssf.record.BOFRecord

TYPE_FLOAT - Static variable in class jj2000.j2k.image.DataBlk

The identifier for the float data type

TYPE_FUNCTION - Static variable in class loci.poi.hssf.record.formula.OperationPtg

TYPE_INT - Static variable in class jj2000.j2k.image.DataBlk

The identifier for the int data type, as signed 32 bits.

TYPE_LEFT - Static variable in class loci.poi.hssf.record.LegendRecord

TYPE_LONG - Static variable in class loci.formats.in.ZeissLSMReader

TYPE_RATIONAL - Static variable in class loci.formats.in.ZeissLSMReader

TYPE_RGB - Static variable in class loci.poi.ddf.EscherPropertyMetaData

TYPE_RIGHT - Static variable in class loci.poi.hssf.record.LegendRecord

TYPE_SHAPEPATH - Static variable in class loci.poi.ddf.EscherPropertyMetaData

TYPE_SHORT - Static variable in class jj2000.j2k.image.DataBlk

The identifier for the short data type, as signed 16 bits.

TYPE_SIMPLE - Static variable in class loci.poi.ddf.EscherPropertyMetaData

TYPE_STRING - Static variable in class loci.plugins.prefs.OptionsList

String indicating option is of type string.

TYPE_SUBBLOCK - Static variable in class loci.formats.in.ZeissLSMReader

Data types.

TYPE_TOP - Static variable in class loci.poi.hssf.record.LegendRecord

TYPE_UNARY - Static variable in class loci.poi.hssf.record.formula.OperationPtg

TYPE_UNDOCKED - Static variable in class loci.poi.hssf.record.LegendRecord

TYPE_UNKNOWN - Static variable in class loci.poi.ddf.EscherPropertyMetaData

TYPE_VB_MODULE - Static variable in class loci.poi.hssf.record.BOFRecord

TYPE_WORKBOOK - Static variable in class loci.poi.hssf.record.BOFRecord

TYPE_WORKSHEET - Static variable in class loci.poi.hssf.record.BOFRecord

TYPE_WORKSPACE_FILE - Static variable in class loci.poi.hssf.record.BOFRecord

TypeAnnotation - Class in ome.xml.model

TypeAnnotation() - Constructor for class ome.xml.model.TypeAnnotation

Default constructor.

TypeAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.TypeAnnotation

Constructs TypeAnnotation recursively from an XML DOM tree.

TypeAnnotation(TypeAnnotation) - Constructor for class ome.xml.model.TypeAnnotation

Copy constructor.

typeCode - Variable in enum ome.jxr.ifd.IFDEntryType

typeDescription - Variable in class loci.formats.Modulo

typeLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

typeNames - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFField

types - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

TYPES - Static variable in class loci.formats.in.DicomReader

TYPES - Static variable in class loci.formats.in.MRCReader

types - Variable in class loci.formats.in.TillVisionReader

types - Static variable in class mdbtools.dbengine.sql.Join

types_table - Static variable in class mdbtools.libmdb.MdbBackend

typesAreEqual(long, long) - Method in class loci.poi.hpsf.Property

typeString - Variable in class ome.metakit.Column

typeText - Variable in class loci.formats.gui.PreviewPane

typeTip - Variable in class loci.formats.gui.PreviewPane

TypeWriter - Class in loci.poi.hpsf

Class for writing little-endian data and more.

TypeWriter() - Constructor for class loci.poi.hpsf.TypeWriter

U

U_DOUBLE - Static variable in class loci.poi.hssf.record.FontRecord

U_DOUBLE - Static variable in class loci.poi.hssf.usermodel.HSSFFont

double underlined

U_DOUBLE_ACCOUNTING - Static variable in class loci.poi.hssf.record.FontRecord

U_DOUBLE_ACCOUNTING - Static variable in class loci.poi.hssf.usermodel.HSSFFont

accounting style double underline

U_NONE - Static variable in class loci.poi.hssf.record.FontRecord

U_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFFont

not underlined

U_SINGLE - Static variable in class loci.poi.hssf.record.FontRecord

U_SINGLE - Static variable in class loci.poi.hssf.usermodel.HSSFFont

single (normal) underline

U_SINGLE_ACCOUNTING - Static variable in class loci.poi.hssf.record.FontRecord

U_SINGLE_ACCOUNTING - Static variable in class loci.poi.hssf.usermodel.HSSFFont

accounting style single underline

UA - Static variable in class ome.units.UNITS

UBMReader - Class in loci.formats.in

UBMReader is the file format reader for UBM .pr3 files.

UBMReader() - Constructor for class loci.formats.in.UBMReader

Constructs a new UBM reader.

UBYTE - Static variable in class loci.formats.in.GatanReader

ubyteToInt(byte) - Static method in class loci.poi.util.LittleEndian

Convert an 'unsigned' byte to an integer.

UCHAR - Static variable in class loci.formats.in.CellSensReader

udata - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

UI - Static variable in class loci.formats.in.DicomReader

UIC1TAG - Static variable in class loci.formats.in.MetamorphReader

UIC2TAG - Static variable in class loci.formats.in.MetamorphReader

UIC3TAG - Static variable in class loci.formats.in.MetamorphReader

UIC4TAG - Static variable in class loci.formats.in.MetamorphReader

UID - Variable in class loci.formats.in.CellVoyagerReader.AreaInfo

UID - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

UINT - Static variable in class loci.formats.in.CellSensReader

UINT - Static variable in class loci.formats.in.GatanReader

UINT16 - Static variable in class loci.formats.FormatTools

Identifies the UINT16 data type used to store pixel values.

UINT32 - Static variable in class loci.formats.FormatTools

Identifies the UINT32 data type used to store pixel values.

UINT8 - Static variable in class loci.formats.FormatTools

Identifies the UINT8 data type used to store pixel values.

UL - Static variable in class loci.formats.in.DicomReader

ulcx - Variable in class jj2000.j2k.wavelet.Subband

The horizontal coordinate of the upper-left corner of the subband, with respect to the canvas origin, in the component's grid and subband's decomposition level.

ulcy - Variable in class jj2000.j2k.wavelet.Subband

The vertical coordinate of the upper-left corner of the subband, with respect to the canvas origin, in the component's grid and subband's decomposition level.

ULONG - Static variable in class loci.formats.in.CellSensReader

ulx - Variable in class jj2000.j2k.codestream.CoordInfo

Horizontal upper left coordinate in the subband

ulx - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct horizontal upper-left coordinate in the corresponding resolution level

ulx - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Upper-left x-coordinate of the code-block (relative to the tile)

ulx - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The horizontal coordinate of the upper-left corner of the code-block

ulx - Variable in class jj2000.j2k.image.DataBlk

The horizontal coordinate (in pixels) of the upper-left corner of the block of data.

ulx - Variable in class jj2000.j2k.roi.encoder.ROI

x coordinate of upper left corner of rectangular ROI

ulx - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

Horizontal uper-left coordinate of the subband mask

ulx - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The horizontal coordinate of the upper-left corner of the code-block

ulx - Variable in class jj2000.j2k.wavelet.Subband

The horizontal coordinate of the upper-left corner of the subband

ulxs - Variable in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

The upper left xs of the ROIs

ulxs - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask

The upper left x coordinates of the applicable ROIs

uly - Variable in class jj2000.j2k.codestream.CoordInfo

Vertical upper left coordinate in the subband

uly - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct vertical upper-left coordinate in the corresponding resolution level

uly - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Upper-left y-coordinate of the code-block (relative to the tile)

uly - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The vertical coordinate of the upper left corner of the code-block

uly - Variable in class jj2000.j2k.image.DataBlk

The vertical coordinate of the upper-left corner of the block of data.

uly - Variable in class jj2000.j2k.roi.encoder.ROI

y coordinate of upper left corner of rectangular ROI

uly - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

Vertical uper-left coordinate of the subband mask

uly - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The vertical coordinate of the upper left corner of the code-block

uly - Variable in class jj2000.j2k.wavelet.Subband

The vertical coordinate of the upper-left corner of the subband

ulys - Variable in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

The upper left ys of the ROIs

ulys - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask

The upper left y coordinates of the applicable ROIs

UN - Static variable in class loci.formats.in.DicomReader

UnaryMinusPtg - Class in loci.poi.hssf.record.formula

Unary Plus operator does not have any effect on the operand

UnaryMinusPtg() - Constructor for class loci.poi.hssf.record.formula.UnaryMinusPtg

Creates new AddPtg

UnaryMinusPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.UnaryMinusPtg

UnaryPlusPtg - Class in loci.poi.hssf.record.formula

Unary Plus operator does not have any effect on the operand

UnaryPlusPtg() - Constructor for class loci.poi.hssf.record.formula.UnaryPlusPtg

Creates new AddPtg

UnaryPlusPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.UnaryPlusPtg

uncompress(int, byte[]) - Method in class loci.formats.in.AVIReader

uncompress(byte[], String) - Method in class loci.formats.in.NativeQTReader

Uncompresses an image plane according to the the codec identifier.

UNCOMPRESSED - Static variable in class loci.formats.in.ZeissCZIReader

Compression constants.

uncompressedMode - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

Uncompressed mode flag: 1 if uncompressed, 0 if not.

UNDEFINED - Static variable in class loci.poi.hpsf.wellknown.SectionIDMap

A property without a known name is described by this string.

UNDEFINED_INTEGER_VALUE - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

Represents an undefined value of integer attributes.

underline - Variable in class loci.formats.in.BaseZeissReader.Shape

undifference(byte[], IFD) - Static method in enum loci.formats.tiff.TiffCompression

Undoes in-place differencing according to the given predictor value.

UnexpectedPropertySetTypeException - Exception in loci.poi.hpsf

This exception is thrown if a certain type of property set is expected (e.g.

UnexpectedPropertySetTypeException() - Constructor for exception loci.poi.hpsf.UnexpectedPropertySetTypeException

Creates an UnexpectedPropertySetTypeException.

UnexpectedPropertySetTypeException(String) - Constructor for exception loci.poi.hpsf.UnexpectedPropertySetTypeException

Creates an UnexpectedPropertySetTypeException with a message string.

UnexpectedPropertySetTypeException(Throwable) - Constructor for exception loci.poi.hpsf.UnexpectedPropertySetTypeException

Creates a new UnexpectedPropertySetTypeException with a reason.

UnexpectedPropertySetTypeException(String, Throwable) - Constructor for exception loci.poi.hpsf.UnexpectedPropertySetTypeException

Creates an UnexpectedPropertySetTypeException with a message string and a reason.

unfilter(byte[], byte[], int, int) - Method in class loci.formats.in.APNGReader

See http://www.w3.org/TR/PNG/#9Filters.

ungroupColumn(short, short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

ungroupFilesBox - Variable in class loci.plugins.in.MainDialog

ungroupRow(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

UNICODE_TCHAR - Static variable in class loci.formats.in.CellSensReader

UnicodeString - Class in loci.poi.hssf.record

Title: Unicode String

UnicodeString() - Constructor for class loci.poi.hssf.record.UnicodeString

UnicodeString(String) - Constructor for class loci.poi.hssf.record.UnicodeString

UnicodeString(RecordInputStream) - Constructor for class loci.poi.hssf.record.UnicodeString

construct a unicode string record and fill its fields, ID is ignored

UnicodeString.FormatRun - Class in loci.poi.hssf.record

UnicodeString.FormatRun(short, short) - Constructor for class loci.poi.hssf.record.UnicodeString.FormatRun

UnicodeString.UnicodeRecordStats - Class in loci.poi.hssf.record

Returns the size of this record, given the ammount of record space remaining, it will also include the size of writing a continue record.

UnicodeString.UnicodeRecordStats() - Constructor for class loci.poi.hssf.record.UnicodeString.UnicodeRecordStats

UNIF_CTXT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The UNIFORM context (with a uniform probability distribution which does not adapt)

UNIF_CTXT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The UNIFORM context (with a uniform probability distribution which does not adapt)

union - Variable in class ome.xml.model.ROI

union - Variable in class ome.xml.model.Shape

Union - Class in ome.xml.model

Union() - Constructor for class ome.xml.model.Union

Default constructor.

Union(Element, OMEModel) - Constructor for class ome.xml.model.Union

Constructs Union recursively from an XML DOM tree.

Union(Union) - Constructor for class ome.xml.model.Union

Copy constructor.

UnionPtg - Class in loci.poi.hssf.record.formula

UnionPtg() - Constructor for class loci.poi.hssf.record.formula.UnionPtg

UnionPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.UnionPtg

uniquePMTs - Variable in class loci.formats.in.ImspectorReader

List of PMTs active during acquisition.

uniqueZ - Variable in class loci.formats.in.PCIReader

UNISOKU_MAGIC_STRING - Static variable in class loci.formats.in.UnisokuReader

UnisokuReader - Class in loci.formats.in

UnisokuReader is the file format reader for Unisoku STM files.

UnisokuReader() - Constructor for class loci.formats.in.UnisokuReader

Constructs a new Unisoku reader.

unit - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

unit - Variable in class loci.formats.Modulo

unit - Variable in class ome.units.quantity.Angle

unit() - Method in class ome.units.quantity.Angle

unit - Variable in class ome.units.quantity.ElectricPotential

unit() - Method in class ome.units.quantity.ElectricPotential

unit - Variable in class ome.units.quantity.Frequency

unit() - Method in class ome.units.quantity.Frequency

unit - Variable in class ome.units.quantity.Length

unit() - Method in class ome.units.quantity.Length

unit - Variable in class ome.units.quantity.Power

unit() - Method in class ome.units.quantity.Power

unit - Variable in class ome.units.quantity.Pressure

unit() - Method in class ome.units.quantity.Pressure

unit() - Method in class ome.units.quantity.Quantity

unit - Variable in class ome.units.quantity.Temperature

unit() - Method in class ome.units.quantity.Temperature

unit - Variable in class ome.units.quantity.Time

unit() - Method in class ome.units.quantity.Time

Unit<Q extends Quantity> - Class in ome.units.unit

The for the Unit class.

Unit(String, String, Double, Double) - Constructor for class ome.units.unit.Unit

units - Variable in class loci.formats.in.GatanReader

units - Variable in class loci.formats.in.VarianFDFReader

UNITS - Class in ome.units

Defines unit constants corresponding to unit classes in ome.units.unit.*

UNITS() - Constructor for class ome.units.UNITS

UNITS_METER - Static variable in class loci.formats.in.NiftiReader

Code for meters.

UNITS_MM - Static variable in class loci.formats.in.NiftiReader

Code for millimeters.

UNITS_MSEC - Static variable in class loci.formats.in.NiftiReader

Code for milliseconds.

UNITS_USEC - Static variable in class loci.formats.in.NiftiReader

Code for microseconds.

UnitsElectricPotential - Enum in ome.xml.model.enums

UnitsElectricPotential(String) - Constructor for enum ome.xml.model.enums.UnitsElectricPotential

UnitsElectricPotentialEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for UnitsElectricPotential.

UnitsElectricPotentialEnumHandler() - Constructor for class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

UnitsFrequency - Enum in ome.xml.model.enums

UnitsFrequency(String) - Constructor for enum ome.xml.model.enums.UnitsFrequency

UnitsFrequencyEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for UnitsFrequency.

UnitsFrequencyEnumHandler() - Constructor for class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

UnitsLength - Enum in ome.xml.model.enums

UnitsLength(String) - Constructor for enum ome.xml.model.enums.UnitsLength

UnitsLengthEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for UnitsLength.

UnitsLengthEnumHandler() - Constructor for class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

UnitsPower - Enum in ome.xml.model.enums

UnitsPower(String) - Constructor for enum ome.xml.model.enums.UnitsPower

UnitsPowerEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for UnitsPower.

UnitsPowerEnumHandler() - Constructor for class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

UnitsPressure - Enum in ome.xml.model.enums

UnitsPressure(String) - Constructor for enum ome.xml.model.enums.UnitsPressure

UnitsPressureEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for UnitsPressure.

UnitsPressureEnumHandler() - Constructor for class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

UnitsRecord - Class in loci.poi.hssf.record

The units record describes units.

UnitsRecord() - Constructor for class loci.poi.hssf.record.UnitsRecord

UnitsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.UnitsRecord

Constructs a Units record and sets its fields appropriately.

UnitsTemperature - Enum in ome.xml.model.enums

UnitsTemperature(String) - Constructor for enum ome.xml.model.enums.UnitsTemperature

UnitsTemperatureEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for UnitsTemperature.

UnitsTemperatureEnumHandler() - Constructor for class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

UnitsTime - Enum in ome.xml.model.enums

UnitsTime(String) - Constructor for enum ome.xml.model.enums.UnitsTime

UnitsTimeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for UnitsTime.

UnitsTimeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

UNIX - Static variable in class loci.common.DateTools

Timestamp formats.

UNIX_EPOCH - Static variable in class loci.common.DateTools

Milliseconds until UNIX epoch.

UNKNOWN - Static variable in class loci.formats.in.GatanReader

unknown - Variable in class loci.poi.hssf.record.LineFormatRecord

unknown1 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown10 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown11 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown12 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown13 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown14 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown15 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown16 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown17 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown18 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown19 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown2 - Variable in class loci.formats.in.BaseZeissReader.Shape

UNKNOWN2 - Static variable in class loci.formats.in.GatanReader

unknown3 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown4 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown5 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown6 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown7 - Variable in class loci.formats.in.BaseZeissReader.Shape

unknown8 - Variable in class loci.formats.in.BaseZeissReader.Shape

UNKNOWN_AXIS - Static variable in class loci.formats.AxisGuesser

Axis type for unclassified axes.

UNKNOWN_BLOBS_VOLUME - Static variable in class loci.formats.in.CellSensReader

UNKNOWN_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies an unknown domain.

unknownColor - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

unknownColor - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

UnknownEscherRecord - Class in loci.poi.ddf

This record is used whenever a escher record is encountered that we do not explicitly support.

UnknownEscherRecord() - Constructor for class loci.poi.ddf.UnknownEscherRecord

UnknownFormatException - Exception in loci.formats

UnknownFormatException is the exception thrown when the format of a particular data stream or filename cannot be recognized or is unsupported.

UnknownFormatException() - Constructor for exception loci.formats.UnknownFormatException

UnknownFormatException(String) - Constructor for exception loci.formats.UnknownFormatException

UnknownFormatException(String, Throwable) - Constructor for exception loci.formats.UnknownFormatException

UnknownFormatException(Throwable) - Constructor for exception loci.formats.UnknownFormatException

UnknownPtg - Class in loci.poi.hssf.record.formula

UnknownPtg() - Constructor for class loci.poi.hssf.record.formula.UnknownPtg

Creates new UnknownPtg

UnknownPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.UnknownPtg

UnknownRecord - Class in loci.poi.hssf.record

Title: Unknown Record (for debugging)

UnknownRecord() - Constructor for class loci.poi.hssf.record.UnknownRecord

UnknownRecord(short, byte[]) - Constructor for class loci.poi.hssf.record.UnknownRecord

UnknownRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.UnknownRecord

construct an unknown record.

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Annotation

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Channel

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Dataset

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Detector

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Dichroic

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Experimenter

unlinkAnnotation(Annotation) - Method in class ome.xml.model.ExperimenterGroup

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Filter

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Image

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Instrument

unlinkAnnotation(Annotation) - Method in class ome.xml.model.LightPath

unlinkAnnotation(Annotation) - Method in class ome.xml.model.LightSource

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Objective

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Plane

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Plate

unlinkAnnotation(Annotation) - Method in class ome.xml.model.PlateAcquisition

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Project

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Reagent

unlinkAnnotation(Annotation) - Method in class ome.xml.model.ROI

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Screen

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Shape

unlinkAnnotation(Annotation) - Method in class ome.xml.model.Well

unlinkChannel(Channel) - Method in class ome.xml.model.Annotation

unlinkChannel(Channel) - Method in class ome.xml.model.FilterSet

unlinkDataset(Dataset) - Method in class ome.xml.model.Annotation

unlinkDataset(Dataset) - Method in class ome.xml.model.Experimenter

unlinkDataset(Dataset) - Method in class ome.xml.model.ExperimenterGroup

unlinkDataset(Dataset) - Method in class ome.xml.model.Image

unlinkDataset(Dataset) - Method in class ome.xml.model.Project

unlinkDetector(Detector) - Method in class ome.xml.model.Annotation

unlinkDichroic(Dichroic) - Method in class ome.xml.model.Annotation

unlinkDichroic(Dichroic) - Method in class ome.xml.model.FilterSet

unlinkDichroic(Dichroic) - Method in class ome.xml.model.LightPath

unlinkEmissionFilter(Filter) - Method in class ome.xml.model.FilterSet

unlinkEmissionFilter(Filter) - Method in class ome.xml.model.LightPath

unlinkExcitationFilter(Filter) - Method in class ome.xml.model.FilterSet

unlinkExcitationFilter(Filter) - Method in class ome.xml.model.LightPath

unlinkExperiment(Experiment) - Method in class ome.xml.model.Experimenter

unlinkExperiment(Experiment) - Method in class ome.xml.model.Image

unlinkExperimenter(Experimenter) - Method in class ome.xml.model.Annotation

unlinkExperimenter(Experimenter) - Method in class ome.xml.model.Dataset

unlinkExperimenter(Experimenter) - Method in class ome.xml.model.Experiment

unlinkExperimenter(Experimenter) - Method in class ome.xml.model.ExperimenterGroup

unlinkExperimenter(Experimenter) - Method in class ome.xml.model.Image

unlinkExperimenter(Experimenter) - Method in class ome.xml.model.MicrobeamManipulation

unlinkExperimenter(Experimenter) - Method in class ome.xml.model.Project

unlinkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Annotation

unlinkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Dataset

unlinkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Experimenter

unlinkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Image

unlinkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Leader

unlinkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Project

unlinkFilter(Filter) - Method in class ome.xml.model.Annotation

unlinkFilterSet(FilterSet) - Method in class ome.xml.model.Channel

unlinkFilterSet(FilterSet) - Method in class ome.xml.model.Dichroic

unlinkFilterSetEmissionFilter(FilterSet) - Method in class ome.xml.model.Filter

unlinkFilterSetExcitationFilter(FilterSet) - Method in class ome.xml.model.Filter

unlinkImage(Image) - Method in class ome.xml.model.Annotation

unlinkImage(Image) - Method in class ome.xml.model.Dataset

unlinkImage(Image) - Method in class ome.xml.model.Experiment

unlinkImage(Image) - Method in class ome.xml.model.Experimenter

unlinkImage(Image) - Method in class ome.xml.model.ExperimenterGroup

unlinkImage(Image) - Method in class ome.xml.model.Instrument

unlinkImage(Image) - Method in class ome.xml.model.MicrobeamManipulation

unlinkImage(Image) - Method in class ome.xml.model.ROI

unlinkImage(Image) - Method in class ome.xml.model.WellSample

unlinkInstrument(Instrument) - Method in class ome.xml.model.Annotation

unlinkInstrument(Instrument) - Method in class ome.xml.model.Image

unlinkLaser(Laser) - Method in class ome.xml.model.Pump

unlinkLeader(Experimenter) - Method in class ome.xml.model.ExperimenterGroup

unlinkLightPath(LightPath) - Method in class ome.xml.model.Annotation

unlinkLightPath(LightPath) - Method in class ome.xml.model.Dichroic

unlinkLightPathEmissionFilter(LightPath) - Method in class ome.xml.model.Filter

unlinkLightPathExcitationFilter(LightPath) - Method in class ome.xml.model.Filter

unlinkLightSource(LightSource) - Method in class ome.xml.model.Annotation

unlinkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experimenter

unlinkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Image

unlinkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.ROI

unlinkObjective(Objective) - Method in class ome.xml.model.Annotation

unlinkPlane(Plane) - Method in class ome.xml.model.Annotation

unlinkPlate(Plate) - Method in class ome.xml.model.Annotation

unlinkPlate(Plate) - Method in class ome.xml.model.Screen

unlinkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Annotation

unlinkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.WellSample

unlinkProject(Project) - Method in class ome.xml.model.Annotation

unlinkProject(Project) - Method in class ome.xml.model.Dataset

unlinkProject(Project) - Method in class ome.xml.model.Experimenter

unlinkProject(Project) - Method in class ome.xml.model.ExperimenterGroup

unlinkPump(LightSource) - Method in class ome.xml.model.Laser

unlinkReagent(Reagent) - Method in class ome.xml.model.Annotation

unlinkReagent(Reagent) - Method in class ome.xml.model.Well

unlinkROI(ROI) - Method in class ome.xml.model.Annotation

unlinkROI(ROI) - Method in class ome.xml.model.Image

unlinkROI(ROI) - Method in class ome.xml.model.MicrobeamManipulation

unlinkScreen(Screen) - Method in class ome.xml.model.Annotation

unlinkScreen(Screen) - Method in class ome.xml.model.Plate

unlinkShape(Shape) - Method in class ome.xml.model.Annotation

unlinkWell(Well) - Method in class ome.xml.model.Annotation

unlinkWell(Well) - Method in class ome.xml.model.Reagent

unlinkWellSample(WellSample) - Method in class ome.xml.model.Image

unlinkWellSample(WellSample) - Method in class ome.xml.model.PlateAcquisition

unmagnifiedPixelHeight - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

unmagnifiedPixelWidth - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

unpack(short, byte[], int, int) - Method in class loci.formats.codec.RPZACodec

unpackBits(byte[], int[]) - Method in class loci.formats.in.PictReader

PackBits variant that outputs an int array.

unpackBytes(long, byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates nBytes of the given long and places the result in the given byte array.

unpackBytes(byte[], int, byte[], IFD) - Static method in class loci.formats.tiff.TiffParser

Extracts pixel information from the given byte array according to the bits per sample, photometric interpretation and color map IFD directory entry values, and the specified byte ordering.

unpackEndian - Variable in class loci.formats.in.VeecoReader

unprotectSheet(boolean, boolean, boolean) - Method in class loci.poi.hssf.model.Sheet

unprotect objects in the sheet (will not protect them, but any set to false are unprotected.

unsetColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Removes any currently set ColorConverter object and PhotometricInterpretation tag value.

unsign(byte) - Static method in class mdbtools.libmdb.file

UnsignedIntBuffer - Class in loci.formats.gui

DataBuffer that stores unsigned ints.

UnsignedIntBuffer(int[], int) - Constructor for class loci.formats.gui.UnsignedIntBuffer

Construct a new buffer of unsigned ints using the given int array.

UnsignedIntBuffer(int[][], int) - Constructor for class loci.formats.gui.UnsignedIntBuffer

Construct a new buffer of unsigned ints using the given 2D int array.

UnsignedIntColorModel - Class in loci.formats.gui

ColorModel that handles unsigned 32 bit data.

UnsignedIntColorModel(int, int, int) - Constructor for class loci.formats.gui.UnsignedIntColorModel

UnsupportedCompressionException - Exception in loci.formats

UnsupportedCompressionException is the exception thrown when the compression scheme used in a particular file or stream is unsupported.

UnsupportedCompressionException() - Constructor for exception loci.formats.UnsupportedCompressionException

UnsupportedCompressionException(String) - Constructor for exception loci.formats.UnsupportedCompressionException

UnsupportedCompressionException(String, Throwable) - Constructor for exception loci.formats.UnsupportedCompressionException

UnsupportedCompressionException(Throwable) - Constructor for exception loci.formats.UnsupportedCompressionException

unsupportedMessage - Static variable in class loci.poi.hpsf.VariantSupport

Keeps a list of the variant types an "unsupported" message has already been issued for.

UnsupportedVariantTypeException - Exception in loci.poi.hpsf

This exception is thrown if HPSF encounters a variant type that isn't supported yet.

UnsupportedVariantTypeException(long, Object) - Constructor for exception loci.poi.hpsf.UnsupportedVariantTypeException

Constructor.

UNUSED_BLOCK - Static variable in interface loci.poi.poifs.common.POIFSConstants

unwrap() - Method in class loci.formats.ReaderWrapper

Unwraps nested wrapped readers until the core reader (i.e., not a ReaderWrapper or ImageReader) is found.

unwrap(String) - Method in class loci.formats.ReaderWrapper

Unwraps nested wrapped readers until the core reader (i.e., not a ReaderWrapper or ImageReader) is found.

unwrap(Class<? extends IFormatReader>, String) - Method in class loci.formats.ReaderWrapper

Unwraps nested wrapped readers until the given reader class is found.

unwrap() - Method in class loci.formats.WriterWrapper

Unwraps nested wrapped writers until the core writer (i.e., not a WriterWrapper or ImageWriter) is found.

unwrap(String) - Method in class loci.formats.WriterWrapper

Unwraps nested wrapped writers until the core writer (i.e., not a WriterWrapper or ImageWriter) is found.

unwrap(Class<? extends IFormatWriter>, String) - Method in class loci.formats.WriterWrapper

Unwraps nested wrapped writers until the given writer class is found.

unwrap(int) - Static method in class loci.plugins.util.ROIHandler

Wraps the specified integer into a Non negative integer.

unwriteProtectWorkbook() - Method in class loci.poi.hssf.model.Workbook

removes the write protect flag

unwriteProtectWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

removes the write protect flag

unzftab - Variable in class loci.common.CBZip2InputStream.Data

Freq table collected to save a pass over the data during decompression.

UP - Static variable in class loci.formats.in.APNGReader

update(int, int, int, PktHeaderBitReader) - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Decodes information for the specified element of the tree, given the threshold, and updates its value.

update(Element, OMEModel) - Method in class ome.xml.model.AbstractOMEModelObject

update(Element, OMEModel) - Method in class ome.xml.model.AffineTransform

Updates AffineTransform recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Annotation

Updates Annotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.AnnotationRef

Updates AnnotationRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Arc

Updates Arc recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.BasicAnnotation

Updates BasicAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.BinaryFile

Updates BinaryFile recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.BinaryOnly

Updates BinaryOnly recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.BinData

Updates BinData recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.BooleanAnnotation

Updates BooleanAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Channel

Updates Channel recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ChannelRef

Updates ChannelRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.CommentAnnotation

Updates CommentAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Dataset

Updates Dataset recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.DatasetRef

Updates DatasetRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Detector

Updates Detector recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.DetectorSettings

Updates DetectorSettings recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Dichroic

Updates Dichroic recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.DichroicRef

Updates DichroicRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.DoubleAnnotation

Updates DoubleAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Ellipse

Updates Ellipse recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.EmissionFilterRef

Updates EmissionFilterRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ExcitationFilterRef

Updates ExcitationFilterRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Experiment

Updates Experiment recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Experimenter

Updates Experimenter recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ExperimenterGroup

Updates ExperimenterGroup recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ExperimenterGroupRef

Updates ExperimenterGroupRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ExperimenterRef

Updates ExperimenterRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ExperimentRef

Updates ExperimentRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.External

Updates External recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Filament

Updates Filament recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.FileAnnotation

Updates FileAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Filter

Updates Filter recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.FilterRef

Updates FilterRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.FilterSet

Updates FilterSet recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.FilterSetRef

Updates FilterSetRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.GenericExcitationSource

Updates GenericExcitationSource recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Image

Updates Image recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ImageRef

Updates ImageRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ImagingEnvironment

Updates ImagingEnvironment recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Instrument

Updates Instrument recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.InstrumentRef

Updates InstrumentRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Label

Updates Label recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Laser

Updates Laser recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Leader

Updates Leader recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.LightEmittingDiode

Updates LightEmittingDiode recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.LightPath

Updates LightPath recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.LightSource

Updates LightSource recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.LightSourceSettings

Updates LightSourceSettings recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Line

Updates Line recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ListAnnotation

Updates ListAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.LongAnnotation

Updates LongAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ManufacturerSpec

Updates ManufacturerSpec recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Map

Updates Map recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.MapAnnotation

Updates MapAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.MapPairs

update(Element, OMEModel) - Method in class ome.xml.model.Mask

Updates Mask recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.MetadataOnly

Updates MetadataOnly recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.MicrobeamManipulation

Updates MicrobeamManipulation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.MicrobeamManipulationRef

Updates MicrobeamManipulationRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Microscope

Updates Microscope recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.NumericAnnotation

Updates NumericAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Objective

Updates Objective recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ObjectiveSettings

Updates ObjectiveSettings recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.OME

Updates OME recursively from an XML DOM tree.

update(Element, OMEModel) - Method in interface ome.xml.model.OMEModelObject

Updates the object hierarchy recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Pixels

Updates Pixels recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Plane

Updates Plane recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Plate

Updates Plate recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.PlateAcquisition

Updates PlateAcquisition recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.PlateRef

Updates PlateRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Point

Updates Point recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Polygon

Updates Polygon recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Polyline

Updates Polyline recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Project

Updates Project recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ProjectRef

Updates ProjectRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Pump

Updates Pump recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Reagent

Updates Reagent recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ReagentRef

Updates ReagentRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Rectangle

Updates Rectangle recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Reference

Updates Reference recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Rights

Updates Rights recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ROI

Updates ROI recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.ROIRef

Updates ROIRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Screen

Updates Screen recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Settings

Updates Settings recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Shape

Updates Shape recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.StageLabel

Updates StageLabel recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.StructuredAnnotations

Updates StructuredAnnotations recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.TagAnnotation

Updates TagAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.TermAnnotation

Updates TermAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.TextAnnotation

Updates TextAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.TiffData

Updates TiffData recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.TimestampAnnotation

Updates TimestampAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.TransmittanceRange

Updates TransmittanceRange recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.TypeAnnotation

Updates TypeAnnotation recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Union

Updates Union recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.UUID

Updates UUID recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.Well

Updates Well recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.WellSample

Updates WellSample recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.WellSampleRef

Updates WellSampleRef recursively from an XML DOM tree.

update(Element, OMEModel) - Method in class ome.xml.model.XMLAnnotation

Updates XMLAnnotation recursively from an XML DOM tree.

update2003FC - Static variable in class loci.formats.services.OMEXMLServiceImpl

Stylesheets for updating from previous schema releases.

update200706 - Static variable in class loci.formats.services.OMEXMLServiceImpl

update200802 - Static variable in class loci.formats.services.OMEXMLServiceImpl

update200809 - Static variable in class loci.formats.services.OMEXMLServiceImpl

update200909 - Static variable in class loci.formats.services.OMEXMLServiceImpl

update201004 - Static variable in class loci.formats.services.OMEXMLServiceImpl

update201006 - Static variable in class loci.formats.services.OMEXMLServiceImpl

update201106 - Static variable in class loci.formats.services.OMEXMLServiceImpl

update201206 - Static variable in class loci.formats.services.OMEXMLServiceImpl

update201306 - Static variable in class loci.formats.services.OMEXMLServiceImpl

updateBlock(int) - Method in class loci.formats.codec.RPZACodec

updateComposite(int[], int) - Method in class loci.plugins.util.RecordedImageProcessor

updateCRC(int) - Method in class loci.common.CRC

updateIfGlitched() - Method in class loci.plugins.in.SeriesDialog

updateLabel(int, int) - Method in class loci.formats.gui.ImageViewer

Updates cursor probe label.

updateLabels(String) - Method in class loci.formats.gui.DataConverter

updateMetadataLists(Hashtable<String, Object>) - Method in class loci.formats.FormatReader

For the given metadata hashtable, replace any value that is a list with one key/value pair per list entry.

updateMinMax(int, byte[], int) - Method in class loci.formats.MinMaxCalculator

Updates min/max values based on the given byte array.

updateOrder(int) - Method in class loci.formats.gui.CacheComponent

Updates cache order to match the state of the GUI.

updatePending - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

updatePointer(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

updatePriority(int) - Method in class loci.formats.gui.CacheComponent

Updates cache priority to match the state of the GUI.

updateProgressWatch(int, String) - Method in interface jj2000.j2k.util.ProgressWatch

Update the progress watching process to the specified value

Updater - Class in loci.plugins

A plugin for updating the Bio-Formats plugins.

Updater() - Constructor for class loci.plugins.Updater

updateRange(int) - Method in class loci.formats.gui.CacheComponent

Updates cache range to match the state of the GUI.

updateSource() - Method in class loci.formats.gui.CacheComponent

Updates cache source to match the state of the GUI.

updateStrategy() - Method in class loci.formats.gui.CacheComponent

Updates cache strategy to match the state of the GUI.

updateTiming(int, int, int, int) - Method in class loci.plugins.in.ImagePlusReader

UPGRADE_CHECK_ALLOWED_PROPERTY - Static variable in class loci.formats.UpgradeChecker

System property indicating whether the upgrade check is ever allowed.

UPGRADE_CHECK_KEY - Static variable in class loci.plugins.config.ConfigWindow

UPGRADE_CHECK_PROPERTY - Static variable in class loci.formats.UpgradeChecker

System property to set once the upgrade check is performed.

upgradeBox - Variable in class loci.plugins.config.ConfigWindow

UpgradeCheck - Class in loci.formats.tools

Utility that checks for a new stable version, and optionally installs a new version of Bio-Formats ueber tools.

UpgradeCheck() - Constructor for class loci.formats.tools.UpgradeCheck

UpgradeChecker - Class in loci.formats

Class that allows checking for new versions of Bio-Formats, as well as updating to the latest stable, daily, or trunk version.

UpgradeChecker() - Constructor for class loci.formats.UpgradeChecker

UpgradeDialog - Class in loci.plugins.in

Bio-Formats Importer upgrade checker dialog box.

UpgradeDialog(ImportProcess) - Constructor for class loci.plugins.in.UpgradeDialog

Creates an upgrade checker dialog for the Bio-Formats Importer.

Upper - Class in mdbtools.dbengine.functions

Upper() - Constructor for class mdbtools.dbengine.functions.Upper

upsampleAndConvolve(float[], float[], float[]) - Static method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the signal resulting of upsampling (by 2) the input signal 'in' and then convolving it with the time-reversed signal 'wf'.

url - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

url - Variable in class loci.common.Location

url - Variable in class loci.common.URLHandle

URL of open socket

url - Variable in class loci.plugins.config.ConfigWindow

url - Variable in class loci.plugins.config.LibraryEntry

URL_3I_SLD - Static variable in class loci.formats.in.SlideBook6Reader

URL_BF_SOFTWARE - Static variable in class loci.plugins.util.LibraryChecker

URL for Bio-Formats web page.

URL_BIO_FORMATS - Static variable in class loci.formats.FormatTools

URL of Bio-Formats web page.

URL_BIO_FORMATS_IMAGEJ - Static variable in class loci.plugins.About

URL of Bio-Formats ImageJ web page.

URL_BIO_FORMATS_LIBRARIES - Static variable in class loci.formats.FormatTools

URL of 'Bio-Formats as a Java Library' web page.

URL_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

URL_DATA_BROWSER - Static variable in class loci.plugins.About

URL of Data Browser web page.

URL_JAVADOCS - Static variable in class loci.plugins.macro.LociFunctions

URL for Javadocs.

URL_NIKON_ND2 - Static variable in class loci.formats.in.LegacyND2Reader

URL_OME_TIFF - Static variable in class loci.formats.FormatTools

URL of OME-TIFF web page.

URL_SOFTWARE - Static variable in class loci.plugins.About

URL of the Bio-Formats web page.

URLHandle - Class in loci.common

Provides random access to URLs using the IRandomAccess interface.

URLHandle(String) - Constructor for class loci.common.URLHandle

Constructs a new URLHandle using the given URL.

urlPath - Variable in class loci.plugins.Updater

Path to ueber-jar whether bioformats_package.jar or loci_tools.jar.

US - Static variable in class loci.formats.in.DicomReader

usage_map - Variable in class mdbtools.libmdb.MdbTableDef

use64Bit - Variable in class loci.formats.in.MinimalTiffReader

USE_A1_MODE - Static variable in class loci.poi.hssf.record.RefModeRecord

USE_ORIGINAL_FRAME_RATE - Static variable in class loci.formats.in.CellSensReader

USE_R1C1_MODE - Static variable in class loci.poi.hssf.record.RefModeRecord

usebais - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader

Flag indicating whether the data should be read from the buffer

used - Variable in class loci.formats.in.APLReader

used - Variable in class loci.formats.in.BioRadReader

used - Variable in class loci.formats.in.OMETiffReader

List of used files.

usedFile(String) - Method in class loci.formats.in.LeicaReader

usedFiles - Variable in class loci.formats.in.CellSensReader

usedFiles - Variable in class loci.formats.in.FV1000Reader

Used file list.

usedSize - Variable in class loci.formats.in.ZeissCZIReader.Segment

usedToInitialize - Variable in class loci.formats.FileInfo

Whether or not this file can be passed to the appropriate reader's setId(String) method.

useExcel4Colors - Variable in class loci.poi.hssf.record.DataFormatRecord

useLegacy - Variable in class loci.formats.DelegateReader

Flag indicating whether to use legacy reader by default.

useMappedByteBuffer - Static variable in class loci.common.NIOByteBufferProvider

Whether or not we are to use memory mapped I/O.

useMotor - Variable in class loci.formats.in.SDTInfo

usepage - Static variable in class loci.poi.hssf.record.PrintSetupRecord

usePOCQuit - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Whether or not to use only first progression order

USER - Static variable in class loci.formats.in.OpenlabReader

USER_COMMENT - Static variable in class loci.formats.tiff.IFD

userDisplayName - Variable in class loci.formats.in.ZeissCZIReader

userEmail - Variable in class loci.formats.in.ZeissCZIReader

userFirstName - Variable in class loci.formats.in.ZeissCZIReader

userInputFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

userInstitution - Variable in class loci.formats.in.ZeissCZIReader

userLastName - Variable in class loci.formats.in.ZeissCZIReader

userMetadataStore - Variable in class loci.formats.Memoizer

MetadataStore set by the caller.

userMiddleName - Variable in class loci.formats.in.ZeissCZIReader

userName - Variable in class loci.formats.in.FEITiffReader

userName - Variable in class loci.formats.in.ZeissCZIReader

userName - Variable in class loci.formats.in.ZeissLSMReader

userName - Variable in class ome.xml.model.Experimenter

useRoi() - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function returns the flag indicating if any ROI functionality used

uses1904datewindowing - Variable in class loci.poi.hssf.model.Workbook

UseSelFSRecord - Class in loci.poi.hssf.record

Title: Use Natural Language Formulas Flag

UseSelFSRecord() - Constructor for class loci.poi.hssf.record.UseSelFSRecord

UseSelFSRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.UseSelFSRecord

Constructs a UseSelFS record and sets its fields appropriately.

useStartLevel - Variable in class jj2000.j2k.roi.encoder.ROIScaler

Number of resolution levels to include in ROI mask

useZ - Variable in class loci.formats.in.NativeND2Reader

USHORT - Static variable in class loci.formats.in.CellSensReader

USHORT - Static variable in class loci.formats.in.GatanReader

usingCodecLib - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

UT - Static variable in class loci.formats.in.DicomReader

utdepth - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

The bit-depths of un-transformed components

Util - Class in loci.poi.hpsf

Provides various static utility methods.

Util() - Constructor for class loci.poi.hpsf.Util

Util - Class in mdbtools.dbengine.sql

Helper methods

Util() - Constructor for class mdbtools.dbengine.sql.Util

Util - Class in mdbtools.libmdb

Util() - Constructor for class mdbtools.libmdb.Util

utrb - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer

The "range bits" for each un-transformed component

uuid - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

The data elements in this UUID box.

uuid - Variable in class loci.formats.in.LeicaSCNReader.Image

uuid - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection

uuid - Variable in class ome.xml.model.BinaryOnly

uuid - Variable in class ome.xml.model.OME

uuid - Variable in class ome.xml.model.TiffData

UUID - Class in ome.xml.model

UUID() - Constructor for class ome.xml.model.UUID

Default constructor.

UUID(Element, OMEModel) - Constructor for class ome.xml.model.UUID

Constructs UUID recursively from an XML DOM tree.

UUID(UUID) - Constructor for class ome.xml.model.UUID

Copy constructor.

UUID_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

UUID_INFO_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

UUID_LIST_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

UUID Info Boxes

UUIDBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a UUID Box of JPEG JP2 file format.

UUIDBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Constructs a UUIDBox from its content data array.

UUIDBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Constructs a UUIDBox based on the provided org.w3c.dom.Node.

UUIDListBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a UUID list Box of JPEG JP2 file format.

UUIDListBox(short, byte[][]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

Constructs a UUIDListBox from the provided uuid number and uuids.

UUIDListBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

Constructs a UUIDListBox from the provided content data array.

UUIDListBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

Constructs a UUIDListBox based on the provided org.w3c.dom.Node.

uuids - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

uuids - Variable in class loci.formats.out.OMETiffWriter

V

V - Static variable in class ome.units.UNITS

V3DrawWriter - Class in loci.formats.out

V3DrawWriter writes images in the .v3draw format for rapid I/O in Vaa3D, an open-source 3D visualization and analysis toolkit.

V3DrawWriter() - Constructor for class loci.formats.out.V3DrawWriter

valid - Variable in class loci.formats.FilePattern

The validity of the file pattern.

valid() - Method in class loci.formats.in.BaseZeissReader.Tag

Check if the tag is valid (key, value and category have been set).

valid - Variable in class loci.formats.in.LeicaReader

valid - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

valid() - Method in class loci.formats.in.ZeissTIFFHandler.Tag

Check if the tag is valid (key, value and category have been set).

validate(File) - Method in class ome.specification.XMLWriter

Validates if the file is compatible with the latest model.

validateColumn(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Runs a bounds check for column numbers

validateFile(File, StreamSource[]) - Method in class ome.specification.OmeValidator

Validate the specified file Any validation errors thrown as an exception.

validateFile(File, File) - Method in class ome.specification.OmeValidator

validateFileToStdError(File, StreamSource[]) - Method in class ome.specification.OmeValidator

Validate the specified file Any validation errors are sent to StdErr, not thrown as an exception.

validateLength(int) - Method in class loci.common.AbstractNIOHandle

Ensures that the handle has the correct length to be written to and extends it as required.

validateMode(String) - Method in class loci.common.AbstractNIOHandle

Ensures that the file mode is either "r" or "rw".

validateOMEXML(String) - Method in interface loci.formats.services.OMEXMLService

Attempts to validate the given OME-XML string using Java's XML validation facility.

validateOMEXML(String, boolean) - Method in interface loci.formats.services.OMEXMLService

Attempts to validate the given OME-XML string using Java's XML validation facility.

validateOMEXML(String) - Method in class loci.formats.services.OMEXMLServiceImpl

validateOMEXML(String, boolean) - Method in class loci.formats.services.OMEXMLServiceImpl

validateRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Runs a bounds check for row numbers

validateSid(short) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Not required by an aggregate

validateSid(short) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

validateSid(short) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.AreaFormatRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.AreaRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.AxisOptionsRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.AxisParentRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.AxisRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.AxisUsedRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.BackupRecord

validateSid(short) - Method in class loci.poi.hssf.record.BarRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.BeginRecord

validateSid(short) - Method in class loci.poi.hssf.record.BlankRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.BOFRecord

validateSid(short) - Method in class loci.poi.hssf.record.BookBoolRecord

validateSid(short) - Method in class loci.poi.hssf.record.BoolErrRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.BottomMarginRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.BoundSheetRecord

validateSid(short) - Method in class loci.poi.hssf.record.CalcCountRecord

validateSid(short) - Method in class loci.poi.hssf.record.CalcModeRecord

validateSid(short) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.ChartFormatRecord

validateSid(short) - Method in class loci.poi.hssf.record.ChartRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.CodepageRecord

validateSid(short) - Method in class loci.poi.hssf.record.ColumnInfoRecord

validateSid(short) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.ContinueRecord

Make sure we have a good id

validateSid(short) - Method in class loci.poi.hssf.record.CountryRecord

validateSid(short) - Method in class loci.poi.hssf.record.DataFormatRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.DateWindow1904Record

validateSid(short) - Method in class loci.poi.hssf.record.DatRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.DBCellRecord

validateSid(short) - Method in class loci.poi.hssf.record.DefaultColWidthRecord

validateSid(short) - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

validateSid(short) - Method in class loci.poi.hssf.record.DeltaRecord

validateSid(short) - Method in class loci.poi.hssf.record.DimensionsRecord

validateSid(short) - Method in class loci.poi.hssf.record.DrawingRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.DSFRecord

validateSid(short) - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.EndRecord

validateSid(short) - Method in class loci.poi.hssf.record.EndSubRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.EOFRecord

validateSid(short) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

validateSid(short) - Method in class loci.poi.hssf.record.ExternSheetRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.ExternSheetSubRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

validateSid(short) - Method in class loci.poi.hssf.record.ExtSSTRecord

validateSid(short) - Method in class loci.poi.hssf.record.FilePassRecord

validateSid(short) - Method in class loci.poi.hssf.record.FileSharingRecord

validateSid(short) - Method in class loci.poi.hssf.record.FnGroupCountRecord

validateSid(short) - Method in class loci.poi.hssf.record.FontBasisRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.FontIndexRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.FontRecord

validateSid(short) - Method in class loci.poi.hssf.record.FooterRecord

validateSid(short) - Method in class loci.poi.hssf.record.FormatRecord

validateSid(short) - Method in class loci.poi.hssf.record.FormulaRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.FrameRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.GridsetRecord

validateSid(short) - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.GutsRecord

validateSid(short) - Method in class loci.poi.hssf.record.HCenterRecord

validateSid(short) - Method in class loci.poi.hssf.record.HeaderRecord

validateSid(short) - Method in class loci.poi.hssf.record.HideObjRecord

validateSid(short) - Method in class loci.poi.hssf.record.IndexRecord

validateSid(short) - Method in class loci.poi.hssf.record.InterfaceEndRecord

validateSid(short) - Method in class loci.poi.hssf.record.InterfaceHdrRecord

validateSid(short) - Method in class loci.poi.hssf.record.IterationRecord

validateSid(short) - Method in class loci.poi.hssf.record.LabelRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.LabelSSTRecord

validateSid(short) - Method in class loci.poi.hssf.record.LeftMarginRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.LegendRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.LineFormatRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.LinkedDataRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.MergeCellsRecord

validateSid(short) - Method in class loci.poi.hssf.record.MMSRecord

validateSid(short) - Method in class loci.poi.hssf.record.MulBlankRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.MulRKRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.NameRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.NoteRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.NumberRecord

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.ObjectLinkRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.ObjectProtectRecord

validateSid(short) - Method in class loci.poi.hssf.record.ObjRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.PageBreakRecord

validateSid(short) - Method in class loci.poi.hssf.record.PaletteRecord

validateSid(short) - Method in class loci.poi.hssf.record.PaneRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.PasswordRecord

validateSid(short) - Method in class loci.poi.hssf.record.PasswordRev4Record

validateSid(short) - Method in class loci.poi.hssf.record.PlotAreaRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.PlotGrowthRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.PrecisionRecord

validateSid(short) - Method in class loci.poi.hssf.record.PrintGridlinesRecord

validateSid(short) - Method in class loci.poi.hssf.record.PrintHeadersRecord

validateSid(short) - Method in class loci.poi.hssf.record.PrintSetupRecord

validateSid(short) - Method in class loci.poi.hssf.record.ProtectionRev4Record

validateSid(short) - Method in class loci.poi.hssf.record.ProtectRecord

validateSid(short) - Method in class loci.poi.hssf.record.RecalcIdRecord

validateSid(short) - Method in class loci.poi.hssf.record.Record

called by constructor, should throw runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.RefModeRecord

validateSid(short) - Method in class loci.poi.hssf.record.RefreshAllRecord

validateSid(short) - Method in class loci.poi.hssf.record.RightMarginRecord

Checks the sid matches the expected side for this record * * @param id the expected sid.

validateSid(short) - Method in class loci.poi.hssf.record.RKRecord

validateSid(short) - Method in class loci.poi.hssf.record.RowRecord

validateSid(short) - Method in class loci.poi.hssf.record.SaveRecalcRecord

validateSid(short) - Method in class loci.poi.hssf.record.ScenarioProtectRecord

validateSid(short) - Method in class loci.poi.hssf.record.SCLRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.SelectionRecord

validateSid(short) - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.SeriesIndexRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.SeriesListRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.SeriesRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.SeriesTextRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.SharedFormulaRecord

validateSid(short) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.SSTRecord

validate SID

validateSid(short) - Method in class loci.poi.hssf.record.StringRecord

Throw a runtime exception in the event of a record passed with a differing ID.

validateSid(short) - Method in class loci.poi.hssf.record.StyleRecord

validateSid(short) - Method in class loci.poi.hssf.record.SupBookRecord

validateSid(short) - Method in class loci.poi.hssf.record.TabIdRecord

validateSid(short) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.TextRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.TickRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.TopMarginRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.UnicodeString

NO OP

validateSid(short) - Method in class loci.poi.hssf.record.UnitsRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.UnknownRecord

NO OP!

validateSid(short) - Method in class loci.poi.hssf.record.UseSelFSRecord

validateSid(short) - Method in class loci.poi.hssf.record.ValueRangeRecord

Checks the sid matches the expected side for this record

validateSid(short) - Method in class loci.poi.hssf.record.VCenterRecord

validateSid(short) - Method in class loci.poi.hssf.record.WindowOneRecord

validateSid(short) - Method in class loci.poi.hssf.record.WindowProtectRecord

validateSid(short) - Method in class loci.poi.hssf.record.WindowTwoRecord

validateSid(short) - Method in class loci.poi.hssf.record.WriteAccessRecord

validateSid(short) - Method in class loci.poi.hssf.record.WriteProtectRecord

validateSid(short) - Method in class loci.poi.hssf.record.WSBoolRecord

validateXML(String) - Static method in class loci.common.xml.XMLTools

Attempts to validate the given XML string using Java's XML validation facility.

validateXML(String, String) - Static method in class loci.common.xml.XMLTools

Attempts to validate the given XML string using Java's XML validation facility.

ValidationErrorHandler - Class in loci.common.xml

Used by validateXML to handle XML validation errors.

ValidationErrorHandler() - Constructor for class loci.common.xml.ValidationErrorHandler

ValidationSAXHandler - Class in loci.common.xml

ValidationSAXHandler() - Constructor for class loci.common.xml.ValidationSAXHandler

validBits - Variable in class loci.formats.FormatWriter

The number of valid bits per pixel.

validBits - Variable in class loci.formats.in.FV1000Reader

validChannel - Variable in class loci.formats.in.ScanrReader.ScanrHandler

validLoopState - Variable in class loci.formats.in.ND2Handler

validReaders - Variable in class loci.formats.in.ScreenReader

validsettings - Static variable in class loci.poi.hssf.record.PrintSetupRecord

validStream(RandomAccessInputStream, int, boolean) - Static method in class loci.formats.FormatTools

Returns true if the given RandomAccessInputStream conatins at least 'len' bytes.

validZ - Variable in class loci.formats.in.MetamorphReader

value - Variable in enum loci.formats.in.BaseZeissReader.Charset

value - Variable in enum loci.formats.in.BaseZeissReader.DrawStyle

value - Variable in enum loci.formats.in.BaseZeissReader.FeatureType

value - Variable in enum loci.formats.in.BaseZeissReader.FillStyle

value - Variable in enum loci.formats.in.BaseZeissReader.LineEndPositions

value - Variable in enum loci.formats.in.BaseZeissReader.LineEndStyle

value - Variable in enum loci.formats.in.BaseZeissReader.PointStyle

value - Variable in class loci.formats.in.BaseZeissReader.Tag

value - Variable in enum loci.formats.in.BaseZeissReader.TextAlignment

VALUE - Static variable in class loci.formats.in.CellSensReader

value - Variable in class loci.formats.in.FEITiffReader.FEIHandler

VALUE - Static variable in class loci.formats.in.GatanReader

value - Variable in class loci.formats.in.ImaconReader.ImaconHandler

value - Variable in class loci.formats.in.IvisionReader.IvisionHandler

value(PrairieMetadata.Value) - Method in class loci.formats.in.PrairieMetadata

Returns value.value(), or null if value is null.

value(PrairieMetadata.Value, String) - Method in class loci.formats.in.PrairieMetadata

Returns value.get(key).value(), or null if value or value.get(key) is null.

value(PrairieMetadata.Value, int) - Method in class loci.formats.in.PrairieMetadata

Returns value.get(index).value(), or null if value or value.get(index) is null.

value() - Method in interface loci.formats.in.PrairieMetadata.Value

value - Variable in class loci.formats.in.PrairieMetadata.ValueItem

value() - Method in class loci.formats.in.PrairieMetadata.ValueItem

value() - Method in class loci.formats.in.PrairieMetadata.ValueTable

value - Variable in class loci.formats.in.ZeissTIFFHandler.Tag

value - Variable in class loci.formats.meta.OriginalMetadataAnnotation

value - Variable in class loci.plugins.prefs.BooleanOption

The option's current value.

value - Variable in class loci.plugins.prefs.DoubleOption

The option's current value.

value - Variable in class loci.plugins.prefs.StringOption

The option's current value.

value - Variable in class loci.poi.hpsf.Property

The property's value.

value - Variable in exception loci.poi.hpsf.VariantTypeException

value - Variable in class loci.poi.hssf.model.Node

value - Variable in class mdbtools.libmdb.MdbSarg

value - Variable in class ome.units.quantity.Angle

value() - Method in class ome.units.quantity.Angle

value(Unit<Angle>) - Method in class ome.units.quantity.Angle

value - Variable in class ome.units.quantity.ElectricPotential

value() - Method in class ome.units.quantity.ElectricPotential

value(Unit<ElectricPotential>) - Method in class ome.units.quantity.ElectricPotential

value - Variable in class ome.units.quantity.Frequency

value() - Method in class ome.units.quantity.Frequency

value(Unit<Frequency>) - Method in class ome.units.quantity.Frequency

value - Variable in class ome.units.quantity.Length

value() - Method in class ome.units.quantity.Length

value(Unit<Length>) - Method in class ome.units.quantity.Length

value - Variable in class ome.units.quantity.Power

value() - Method in class ome.units.quantity.Power

value(Unit<Power>) - Method in class ome.units.quantity.Power

value - Variable in class ome.units.quantity.Pressure

value() - Method in class ome.units.quantity.Pressure

value(Unit<Pressure>) - Method in class ome.units.quantity.Pressure

value() - Method in class ome.units.quantity.Quantity

value - Variable in class ome.units.quantity.Temperature

value() - Method in class ome.units.quantity.Temperature

value(Unit<Temperature>) - Method in class ome.units.quantity.Temperature

value - Variable in class ome.units.quantity.Time

value() - Method in class ome.units.quantity.Time

value(Unit<Time>) - Method in class ome.units.quantity.Time

value - Variable in class ome.xml.model.BooleanAnnotation

value - Variable in class ome.xml.model.CommentAnnotation

value - Variable in class ome.xml.model.DoubleAnnotation

value - Variable in enum ome.xml.model.enums.AcquisitionMode

value - Variable in enum ome.xml.model.enums.ArcType

value - Variable in enum ome.xml.model.enums.Binning

value - Variable in enum ome.xml.model.enums.Compression

value - Variable in enum ome.xml.model.enums.ContrastMethod

value - Variable in enum ome.xml.model.enums.Correction

value - Variable in enum ome.xml.model.enums.DetectorType

value - Variable in enum ome.xml.model.enums.DimensionOrder

value - Variable in enum ome.xml.model.enums.ExperimentType

value - Variable in enum ome.xml.model.enums.FilamentType

value - Variable in enum ome.xml.model.enums.FillRule

value - Variable in enum ome.xml.model.enums.FilterType

value - Variable in enum ome.xml.model.enums.FontFamily

value - Variable in enum ome.xml.model.enums.FontStyle

value - Variable in enum ome.xml.model.enums.IlluminationType

value - Variable in enum ome.xml.model.enums.Immersion

value - Variable in enum ome.xml.model.enums.LaserMedium

value - Variable in enum ome.xml.model.enums.LaserType

value - Variable in enum ome.xml.model.enums.LineCap

value - Variable in enum ome.xml.model.enums.Marker

value - Variable in enum ome.xml.model.enums.Medium

value - Variable in enum ome.xml.model.enums.MicrobeamManipulationType

value - Variable in enum ome.xml.model.enums.MicroscopeType

value - Variable in enum ome.xml.model.enums.NamingConvention

value - Variable in enum ome.xml.model.enums.PixelType

value - Variable in enum ome.xml.model.enums.Pulse

value - Variable in enum ome.xml.model.enums.UnitsElectricPotential

value - Variable in enum ome.xml.model.enums.UnitsFrequency

value - Variable in enum ome.xml.model.enums.UnitsLength

value - Variable in enum ome.xml.model.enums.UnitsPower

value - Variable in enum ome.xml.model.enums.UnitsPressure

value - Variable in enum ome.xml.model.enums.UnitsTemperature

value - Variable in enum ome.xml.model.enums.UnitsTime

value - Variable in class ome.xml.model.LongAnnotation

value - Variable in class ome.xml.model.MapAnnotation

value - Variable in class ome.xml.model.MapPair

value - Variable in class ome.xml.model.primitives.PrimitiveType

The delegate value.

value - Variable in class ome.xml.model.TagAnnotation

value - Variable in class ome.xml.model.TermAnnotation

value - Variable in class ome.xml.model.TimestampAnnotation

value - Variable in class ome.xml.model.UUID

value - Variable in class ome.xml.model.XMLAnnotation

value_data - Variable in class loci.poi.hssf.record.FormulaRecord

Since the NaN support seems sketchy (different constants) we'll store and spit it out directly

valueAxisCrossing - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

valueChanged(ListSelectionEvent) - Method in class loci.plugins.config.ConfigWindow

valueCount - Variable in class loci.formats.tiff.TiffIFDEntry

The number of values, Count of the indicated Type.

valueKeyMap - Variable in class loci.poi.util.IntMapper

valueNames - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

valueOf(String) - Static method in enum loci.formats.codec.CompressionType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.codec.JPEG2000BoxType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.codec.JPEG2000SegmentMarker

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.Charset

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.Context

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.DrawStyle

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.FeatureType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.FillStyle

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.LineEndPositions

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.LineEndStyle

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.PointStyle

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.TextAlignment

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.in.MetadataLevel

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.tiff.IFDType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.tiff.PhotoInterp

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.tiff.TiffCompression

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.formats.tools.PrintFormatTable.PrintStyles

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.plugins.in.ImportStep

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum loci.plugins.util.LibraryChecker.Library

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.jxr.ifd.IFDEntry

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.jxr.ifd.IFDEntryType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.jxr.ifd.PixelFormat

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.jxr.ifd.PixelType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.jxr.image.BitDepth

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.jxr.image.ComponentMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.jxr.image.FrequencyBand

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.jxr.image.InternalColorFormat

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.jxr.image.OutputColorFormat

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.AcquisitionMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.ArcType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.Binning

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.Compression

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.ContrastMethod

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.Correction

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.DetectorType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.DimensionOrder

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.ExperimentType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.FilamentType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.FillRule

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.FilterType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.FontFamily

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.FontStyle

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.IlluminationType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.Immersion

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.LaserMedium

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.LaserType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.LineCap

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.Marker

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.Medium

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.MicrobeamManipulationType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.MicroscopeType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.NamingConvention

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.PixelType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.Pulse

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.UnitsElectricPotential

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.UnitsFrequency

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.UnitsLength

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.UnitsPower

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.UnitsPressure

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.UnitsTemperature

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.xml.model.enums.UnitsTime

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in class ome.xml.model.primitives.Color

Returns an Color object holding the value of the specified string.

valueOf(String) - Static method in class ome.xml.model.primitives.NonNegativeFloat

Returns an NonNegativeFloat object holding the value of the specified string.

valueOf(String) - Static method in class ome.xml.model.primitives.NonNegativeInteger

Returns an NonNegativeInteger object holding the value of the specified string.

valueOf(String) - Static method in class ome.xml.model.primitives.NonNegativeLong

Returns an NonNegativeLong object holding the value of the specified string.

valueOf(String) - Static method in class ome.xml.model.primitives.PercentFraction

Returns an PercentFraction object holding the value of the specified string.

valueOf(String) - Static method in class ome.xml.model.primitives.PositiveFloat

Returns an PositiveFloat object holding the value of the specified string.

valueOf(String) - Static method in class ome.xml.model.primitives.PositiveInteger

Returns an PositiveInteger object holding the value of the specified string.

valueOf(String) - Static method in class ome.xml.model.primitives.PositiveLong

Returns an PositiveLong object holding the value of the specified string.

valueOf(String) - Static method in class ome.xml.model.primitives.Timestamp

Returns a Timestamp object holding the value of the specified string, or null if parsing failed.

valueOffset - Variable in class loci.formats.tiff.TiffIFDEntry

The Value Offset, the file offset (in bytes) of the Value for the field.

ValueRangeRecord - Class in loci.poi.hssf.record

The value range record defines the range of the value axis.

ValueRangeRecord() - Constructor for class loci.poi.hssf.record.ValueRangeRecord

ValueRangeRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ValueRangeRecord

Constructs a ValueRange record and sets its fields appropriately.

valueRecIterator - Variable in class loci.poi.hssf.model.Sheet

ValueRecordsAggregate - Class in loci.poi.hssf.record.aggregates

Aggregate value records together.

ValueRecordsAggregate() - Constructor for class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Creates a new instance of ValueRecordsAggregate

ValueRecordsAggregate.MyIterator - Class in loci.poi.hssf.record.aggregates

ValueRecordsAggregate.MyIterator() - Constructor for class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

ValueRecordsAggregate.MyIterator(int, int) - Constructor for class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

values() - Static method in enum loci.formats.codec.CompressionType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.codec.JPEG2000BoxType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.codec.JPEG2000SegmentMarker

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.BaseZeissReader.Charset

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.BaseZeissReader.Context

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.BaseZeissReader.DrawStyle

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.BaseZeissReader.FeatureType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.BaseZeissReader.FillStyle

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.BaseZeissReader.LineEndPositions

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.BaseZeissReader.LineEndStyle

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.BaseZeissReader.PointStyle

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.BaseZeissReader.TextAlignment

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.in.MetadataLevel

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.tiff.IFDType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.tiff.PhotoInterp

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.tiff.TiffCompression

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.formats.tools.PrintFormatTable.PrintStyles

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.plugins.in.ImportStep

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum loci.plugins.util.LibraryChecker.Library

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Method in class loci.poi.util.BinaryTree

Returns a collection view of the values contained in this map.

values() - Static method in enum ome.jxr.ifd.IFDEntry

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.jxr.ifd.IFDEntryType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.jxr.ifd.PixelFormat

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.jxr.ifd.PixelType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.jxr.image.BitDepth

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.jxr.image.ComponentMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.jxr.image.FrequencyBand

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.jxr.image.InternalColorFormat

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.jxr.image.OutputColorFormat

Returns an array containing the constants of this enum type, in the order they are declared.

values - Variable in class ome.metakit.ColumnMap

values() - Static method in enum ome.xml.model.enums.AcquisitionMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.ArcType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.Binning

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.Compression

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.ContrastMethod

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.Correction

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.DetectorType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.DimensionOrder

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.ExperimentType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.FilamentType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.FillRule

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.FilterType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.FontFamily

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.FontStyle

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.IlluminationType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.Immersion

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.LaserMedium

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.LaserType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.LineCap

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.Marker

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.Medium

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.MicrobeamManipulationType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.MicroscopeType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.NamingConvention

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.PixelType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.Pulse

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.UnitsElectricPotential

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.UnitsFrequency

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.UnitsLength

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.UnitsPower

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.UnitsPressure

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.UnitsTemperature

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.xml.model.enums.UnitsTime

Returns an array containing the constants of this enum type, in the order they are declared.

VALUES_DATA_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord

VALUES_DATA_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord

VALUES_DATA_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord

VALUES_DATA_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord

valuesByKey(Map<K, V>) - Method in class loci.formats.in.PrairieMetadata

Gets the values of the given map, sorted by key.

valuesByValue() - Method in class loci.poi.util.BinaryTree

Returns a collection view of the values contained in this map.

valuesInReverse - Variable in class loci.poi.hssf.record.ValueRangeRecord

valueToIndex - Variable in class loci.formats.in.FakeReader

For indexed color, mapping from indices to values and vice versa.

valueType - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

variableList - Variable in class loci.formats.services.NetCDFServiceImpl

variables - Variable in class loci.common.ReflectedUniverse

Deprecated.

Hashtable containing all variables present in the universe.

VarianFDFReader - Class in loci.formats.in

VarianFDFReader is the file format reader for Varian FDF files.

VarianFDFReader() - Constructor for class loci.formats.in.VarianFDFReader

Constructs a new Varian FDF reader.

variant - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

File variant: PBM/PGM/PPM, ASCII/RAW.

variant - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

variant - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

The image variants.

Variant - Class in loci.poi.hpsf

The Variant types as defined by Microsoft's COM.

Variant() - Constructor for class loci.poi.hpsf.Variant

VariantSupport - Class in loci.poi.hpsf

Supports reading and writing of variant data.

VariantSupport() - Constructor for class loci.poi.hpsf.VariantSupport

variantType - Variable in exception loci.poi.hpsf.VariantTypeException

VariantTypeException - Exception in loci.poi.hpsf

This exception is thrown if HPSF encounters a problem with a variant type.

VariantTypeException(long, Object, String) - Constructor for exception loci.poi.hpsf.VariantTypeException

Constructor.

varyDisplayPattern - Variable in class loci.poi.hssf.record.ChartFormatRecord

VCenterRecord - Class in loci.poi.hssf.record

Title: VCenter record

VCenterRecord() - Constructor for class loci.poi.hssf.record.VCenterRecord

VCenterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.VCenterRecord

Constructs a VCENTER record and sets its fields appropriately.

VCLOCK_AMPLITUDE - Static variable in class loci.formats.in.CellSensReader

VCS_REVISION - Static variable in class loci.formats.FormatTools

Current VCS revision.

VCS_SHORT_REVISION - Static variable in class loci.formats.FormatTools

Current VCS revision (short form).

vdpi - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

VECTOR_DATA - Static variable in class loci.formats.in.CellSensReader

VECTOR_LAYER_VOLUME - Static variable in class loci.formats.in.CellSensReader

VeecoReader - Class in loci.formats.in

VeecoReader is the file format reader for Veeco HDF files.

VeecoReader() - Constructor for class loci.formats.in.VeecoReader

Constructs a new Veeco reader.

vendor - Static variable in class com.sun.media.imageioimpl.common.PackageUtil

Implementation vendor derived from Manifest.

vendorName - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

verber - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Flag to indicate if we should be verbose about bit stream errors detected with the error resilience options

verifyImageHeaderConformance() - Method in class ome.jxr.parser.DatastreamParser

verifyMinimumPopulated(MetadataRetrieve) - Static method in class loci.formats.MetadataTools

Checks whether the given metadata object has the minimum metadata populated to successfully describe an Image.

verifyMinimumPopulated(MetadataRetrieve, int) - Static method in class loci.formats.MetadataTools

Checks whether the given metadata object has the minimum metadata populated to successfully describe the nth Image.

verifyOMENamespace(String) - Method in class loci.formats.services.OMEXMLServiceImpl

Ensures that an xmlns:ome element exists.

verifyOptions(Object) - Method in class loci.plugins.in.MainDialog

Ensures that the options dialog has no mutually exclusive options.

verifyPrimaryImagePlaneHeaderConformance() - Method in class ome.jxr.parser.DatastreamParser

verifyRequiredEntries() - Method in class ome.jxr.ifd.IFDMetadata

version - Static variable in class com.sun.media.imageioimpl.common.PackageUtil

Implementation version derived from Manifest.

version - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

version - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

version - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

The element values.

version - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

version - Static variable in class jj2000.j2k.JJ2KInfo

The version number (such as 2.0, 2.1.1, etc.)

VERSION - Static variable in class loci.formats.FormatTools

Version number of this release.

version - Variable in class loci.formats.in.GatanReader

version - Variable in class loci.formats.in.LiFlimReader

version - Variable in class loci.formats.in.OpenlabReader

LIFF version (should be 2 or 5).

VERSION - Static variable in class loci.formats.Memoizer

Default file version.

version - Variable in class loci.plugins.config.ConfigWindow

version - Variable in class loci.plugins.config.LibraryEntry

VERSION - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default (0x06 - BIFF8)

VERSION - Static variable in class ome.xml.model.MapPairs

Version number of this schema release.

VERSION_2 - Static variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Deprecated.

VERSION_2 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

VERSION_2_1_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_2_24_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_2_4_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_2_5 - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

VERSION_2_8_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_2_8_W_PALETTE - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

VERSION_2_8_WO_PALETTE - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

VERSION_3 - Static variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Deprecated.

VERSION_3 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

VERSION_3_0 - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

VERSION_3_1_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_3_24_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_3_4_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_3_8_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_3_NT - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

VERSION_3_NT_16_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_3_NT_32_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_3_XP_EMBEDDED - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_4 - Static variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Deprecated.

VERSION_4 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

VERSION_4_16_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_4_1_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_4_24_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_4_32_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_4_4_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_4_8_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_4_XP_EMBEDDED - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_5 - Static variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Deprecated.

VERSION_5 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

VERSION_5_XP_EMBEDDED - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

VERSION_KEY - Static variable in class loci.formats.in.LiFlimReader

VERSION_NUMBER - Static variable in class loci.formats.in.CellSensReader

VERSION_PC_WINDOWS - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

VERSION_PROPERTIES - Static variable in class loci.formats.FormatTools

VERSION_PROPERTIES - Static variable in class ome.xml.model.MapPairs

versionChecking - Variable in class loci.formats.Memoizer

Boolean specifying whether to invalidate the memo file based upon mismatched major/minor version numbers.

versionMismatch() - Method in class loci.formats.Memoizer

Returns true if the version of the memo file as returned by Memoizer.Deser.loadReleaseVersion() and Memoizer.Deser.loadRevision() do not match the current version as specified by FormatTools.VERSION and FormatTools.VCS_REVISION, respectively.

versionOne - Variable in class loci.formats.in.PictReader

Whether or not the file is PICT v1.

versionStrings - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

versionTwo - Variable in class loci.formats.in.ICSReader

Flag indicating whether current file is v2.0.

vert - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Black and white vertical mode table.

vertical - Variable in class loci.poi.hssf.record.LegendRecord

vertical - Variable in class loci.poi.hssf.record.TextRecord

VERTICAL_ALIGNMENT_BOTTOM - Static variable in class loci.poi.hssf.record.TextRecord

VERTICAL_ALIGNMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord

VERTICAL_ALIGNMENT_JUSTIFY - Static variable in class loci.poi.hssf.record.TextRecord

VERTICAL_ALIGNMENT_TOP - Static variable in class loci.poi.hssf.record.TextRecord

VERTICAL_BOTTOM - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

VERTICAL_BOTTOM - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

bottom-aligned vertical alignment

VERTICAL_CENTER - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

VERTICAL_CENTER - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

center-aligned vertical alignment

VERTICAL_CLOCK_VOLTAGE - Static variable in class loci.formats.in.FluoviewReader

VERTICAL_FLIP - Static variable in class loci.formats.in.FluoviewReader

VERTICAL_JUSTIFY - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

VERTICAL_JUSTIFY - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

vertically justified vertical alignment

VERTICAL_SHIFT_SPEED - Static variable in class loci.formats.in.FluoviewReader

VERTICAL_SID - Static variable in class loci.poi.hssf.record.PageBreakRecord

VERTICAL_TEXT_ALIGNMENT_BOTTOM - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

VERTICAL_TEXT_ALIGNMENT_CENTER - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

VERTICAL_TEXT_ALIGNMENT_JUSTIFY - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

VERTICAL_TEXT_ALIGNMENT_TOP - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

VERTICAL_TOP - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

VERTICAL_TOP - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

top-aligned vertical alignment

verticalBorder - Variable in class loci.poi.hssf.record.DatRecord

VerticalPageBreakRecord - Class in loci.poi.hssf.record

VerticalPageBreak record that stores page breaks at columns

VerticalPageBreakRecord() - Constructor for class loci.poi.hssf.record.VerticalPageBreakRecord

VerticalPageBreakRecord(short) - Constructor for class loci.poi.hssf.record.VerticalPageBreakRecord

VerticalPageBreakRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.VerticalPageBreakRecord

verticalPixelsPerPoint - Variable in class loci.poi.hssf.usermodel.EscherGraphics

verticalPointsPerPixel - Variable in class loci.poi.hssf.usermodel.EscherGraphics

VerticalTextAlignment - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

vertMode - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Vertical mode table.

vFilter - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The vertical analysis filter used to decompose this subband.

vFilter - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The vertical analysis filter used to decompose this subband, from its childs.

VG_MAGIC_STRING - Static variable in class loci.formats.in.VGSAMReader

VGSAMReader - Class in loci.formats.in

VGSAMReader is the file format reader for VG SAM .dti files.

VGSAMReader() - Constructor for class loci.formats.in.VGSAMReader

Constructs a new VG SAM reader.

VIEW_BROWSER - Static variable in class loci.plugins.in.ImporterOptions

VIEW_HYPERSTACK - Static variable in class loci.plugins.in.ImporterOptions

VIEW_IMAGE_5D - Static variable in class loci.plugins.in.ImporterOptions

VIEW_KEYS - Static variable in class loci.formats.in.ICSReader

VIEW_NONE - Static variable in class loci.plugins.in.ImporterOptions

VIEW_STANDARD - Static variable in class loci.plugins.in.ImporterOptions

VIEW_VIEW_5D - Static variable in class loci.plugins.in.ImporterOptions

viewFile(String, boolean) - Static method in class loci.poi.poifs.dev.POIFSViewer

virtualBox - Variable in class loci.plugins.in.MainDialog

VirtualImagePlus - Class in loci.plugins.util

Extension of ImagePlus that supports Bio-Formats-driven virtual stacks.

VirtualImagePlus(String, ImageStack) - Constructor for class loci.plugins.util.VirtualImagePlus

virtualReader - Variable in class loci.plugins.in.ImportProcess

VirtualReader - Class in loci.plugins.util

TODO

VirtualReader(IFormatReader) - Constructor for class loci.plugins.util.VirtualReader

visible - Variable in class loci.poi.hssf.usermodel.HSSFComment

visible - Variable in class ome.xml.model.Shape

VisitechReader - Class in loci.formats.in

VisitechReader is the file format reader for Visitech XYS files.

VisitechReader() - Constructor for class loci.formats.in.VisitechReader

vOffsetX - Variable in class loci.formats.in.LeicaSCNReader.Image

vOffsetY - Variable in class loci.formats.in.LeicaSCNReader.Image

VolocityClippingReader - Class in loci.formats.in

VolocityClippingReader is the file format reader for Volocity library clipping files.

VolocityClippingReader() - Constructor for class loci.formats.in.VolocityClippingReader

Constructs a new Volocity clipping reader.

VolocityReader - Class in loci.formats.in

VolocityReader is the file format reader for Volocity library files.

VolocityReader() - Constructor for class loci.formats.in.VolocityReader

Constructs a new Volocity reader.

VolocityReader.Stack - Class in loci.formats.in

VolocityReader.Stack() - Constructor for class loci.formats.in.VolocityReader.Stack

VOLT - Static variable in class ome.units.UNITS

voltage - Variable in class loci.formats.in.FV1000Reader.ChannelData

voltage - Variable in class loci.formats.in.GatanReader

voltage - Variable in class loci.formats.in.LeicaHandler.Detector

voltage - Variable in class loci.formats.in.LeicaReader.Detector

voltage - Variable in class loci.formats.in.MicromanagerReader.Position

voltage - Variable in class loci.formats.in.ND2Handler

voltage - Variable in class ome.xml.model.Detector

voltage - Variable in class ome.xml.model.DetectorSettings

voltages - Variable in class loci.formats.in.FluoviewReader

VOLUME_INDEX - Static variable in class loci.formats.in.CellSensReader

volumeType - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

voxelC - Variable in class loci.formats.in.FluoviewReader

Pixel dimensions for this file.

voxelHeight - Variable in class loci.formats.in.NiftiReader

voxelT - Variable in class loci.formats.in.FluoviewReader

Pixel dimensions for this file.

voxelWidth - Variable in class loci.formats.in.NiftiReader

voxelX - Variable in class loci.formats.in.FluoviewReader

Pixel dimensions for this file.

voxelX - Variable in class loci.formats.in.TCSReader

voxelY - Variable in class loci.formats.in.FluoviewReader

Pixel dimensions for this file.

voxelY - Variable in class loci.formats.in.TCSReader

voxelZ - Variable in class loci.formats.in.FluoviewReader

Pixel dimensions for this file.

voxelZ - Variable in class loci.formats.in.TCSReader

voxSz - Variable in class loci.formats.services.WlzServiceImpl

vPredictor - Variable in class loci.formats.codec.NikonCodecOptions

vPredictor - Variable in class loci.formats.in.NikonReader

vr - Variable in class loci.formats.in.DicomReader

vRes - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

vscroll - Static variable in class loci.poi.hssf.record.WindowOneRecord

vsize - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

vSizeX - Variable in class loci.formats.in.LeicaSCNReader.Image

vSizeY - Variable in class loci.formats.in.LeicaSCNReader.Image

vSpacingZ - Variable in class loci.formats.in.LeicaSCNReader.Image

VSTD_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The mask to isolate the visited bits for row 1 and 2 of the state array.

VSTD_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The mask to isolate the visited bits for row 1 and 2 of the state array.

VT_ARRAY - Static variable in class loci.poi.hpsf.Variant

[V] SAFEARRAY*.

VT_BLOB - Static variable in class loci.poi.hpsf.Variant

[P] Length prefixed bytes.

VT_BLOB_OBJECT - Static variable in class loci.poi.hpsf.Variant

[P] Blob contains an object.

VT_BOOL - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] True=-1, False=0.

VT_BSTR - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] OLE Automation string.

VT_BYREF - Static variable in class loci.poi.hpsf.Variant

[V] void* for local use.

VT_CARRAY - Static variable in class loci.poi.hpsf.Variant

[T] C style array.

VT_CF - Static variable in class loci.poi.hpsf.Variant

[P] Clipboard format.

VT_CLSID - Static variable in class loci.poi.hpsf.Variant

[P] A Class ID.

VT_CY - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] currency.

VT_DATE - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] date.

VT_DECIMAL - Static variable in class loci.poi.hpsf.Variant

[V][T][S] 16 byte fixed point.

VT_DISPATCH - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] IDispatch *.

VT_EMPTY - Static variable in class loci.poi.hpsf.Variant

[V][P] Nothing, i.e.

VT_ERROR - Static variable in class loci.poi.hpsf.Variant

[V][T][S] SCODE.

VT_FILETIME - Static variable in class loci.poi.hpsf.Variant

[P] FILETIME.

VT_HRESULT - Static variable in class loci.poi.hpsf.Variant

[T] Standard return type.

VT_I1 - Static variable in class loci.poi.hpsf.Variant

[T] signed char.

VT_I2 - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] 2 byte signed int.

VT_I4 - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] 4 byte signed int.

VT_I8 - Static variable in class loci.poi.hpsf.Variant

[T][P] signed 64-bit int.

VT_ILLEGAL - Static variable in class loci.poi.hpsf.Variant

FIXME (3): Document this!

VT_ILLEGALMASKED - Static variable in class loci.poi.hpsf.Variant

FIXME (3): Document this!

VT_INT - Static variable in class loci.poi.hpsf.Variant

[T] signed machine int.

VT_LPSTR - Static variable in class loci.poi.hpsf.Variant

[T][P] null terminated string.

VT_LPWSTR - Static variable in class loci.poi.hpsf.Variant

[T][P] wide (Unicode) null terminated string.

VT_NULL - Static variable in class loci.poi.hpsf.Variant

[V][P] SQL style Null.

VT_PTR - Static variable in class loci.poi.hpsf.Variant

[T] pointer type.

VT_R4 - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] 4 byte real.

VT_R8 - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] 8 byte real.

VT_RESERVED - Static variable in class loci.poi.hpsf.Variant

FIXME (3): Document this!

VT_SAFEARRAY - Static variable in class loci.poi.hpsf.Variant

[T] (use VT_ARRAY in VARIANT).

VT_STORAGE - Static variable in class loci.poi.hpsf.Variant

[P] Name of the storage follows.

VT_STORED_OBJECT - Static variable in class loci.poi.hpsf.Variant

[P] Storage contains an object.

VT_STREAM - Static variable in class loci.poi.hpsf.Variant

[P] Name of the stream follows.

VT_STREAMED_OBJECT - Static variable in class loci.poi.hpsf.Variant

[P] Stream contains an object.

VT_TYPEMASK - Static variable in class loci.poi.hpsf.Variant

FIXME (3): Document this!

VT_UI1 - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] unsigned char.

VT_UI2 - Static variable in class loci.poi.hpsf.Variant

[T][P] unsigned short.

VT_UI4 - Static variable in class loci.poi.hpsf.Variant

[T][P] unsigned int.

VT_UI8 - Static variable in class loci.poi.hpsf.Variant

[T][P] unsigned 64-bit int.

VT_UINT - Static variable in class loci.poi.hpsf.Variant

[T] unsigned machine int.

VT_UNKNOWN - Static variable in class loci.poi.hpsf.Variant

[V][T][S] IUnknown *.

VT_USERDEFINED - Static variable in class loci.poi.hpsf.Variant

[T] user defined type.

VT_VARIANT - Static variable in class loci.poi.hpsf.Variant

[V][T][P][S] VARIANT *.

VT_VECTOR - Static variable in class loci.poi.hpsf.Variant

[P] simple counted array.

VT_VOID - Static variable in class loci.poi.hpsf.Variant

[T] C style void.

W

w - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

w - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The width of the image

w - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

w - Variable in class jj2000.j2k.codestream.CoordInfo

Object's width

w - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct width in the corresponding resolution level

w - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Width of the code-block

w - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder

The horizontal dimension of the base level

w - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The horizontal dimension of the base level

w - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The width of the code-block

w - Variable in class jj2000.j2k.image.DataBlk

The width of the block, in pixels.

w - Variable in class jj2000.j2k.image.ImgDataJoiner

The width of the image

w - Variable in class jj2000.j2k.image.input.ImgReader

The width of the image

w - Variable in class jj2000.j2k.roi.encoder.ROI

width of rectangular ROI

w - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

Width of the subband mask

w - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The width of the code-block

w - Variable in class jj2000.j2k.wavelet.Subband

The width of the subband

W - Static variable in class ome.units.UNITS

W3C_XML_SCHEMA - Static variable in class ome.specification.OmeValidator

W3C.

W5X3 - Static variable in interface jj2000.j2k.wavelet.FilterTypes

W5x3 filter: 0x01

W9X7 - Static variable in interface jj2000.j2k.wavelet.FilterTypes

W7x9 filter: 0x00

wait(boolean) - Method in class loci.formats.gui.ImageViewer

Toggles wait cursor.

waitTime - Variable in class loci.formats.in.PrairieMetadata

The wait time of the acquisition.

warn(boolean, String) - Static method in class loci.plugins.BF

WARN - Static variable in class loci.poi.util.POILogger

warnFile(PrairieMetadata.Sequence, int, int) - Method in class loci.formats.in.PrairieReader

Emits a warning about a missing <File>.

warnFilename(PrairieMetadata.Sequence, int, int) - Method in class loci.formats.in.PrairieReader

Emits a warning about a <File>'s missing filename.

warnFrame(PrairieMetadata.Sequence, int) - Method in class loci.formats.in.PrairieReader

Emits a warning about a missing <Frame>.

warning(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

warning(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

WARNING - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

warning - Variable in class loci.common.StatusEvent

Whether or not this is a warning event.

warning(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler

warning(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler

warning(TransformerException) - Method in class loci.common.xml.XMLTools.XMLListener

WARNING_COMMENT - Static variable in class loci.formats.out.OMETiffWriter

wasCanceled() - Method in class loci.plugins.in.ImportProcess

Gets whether the import process was canceled.

wasNull() - Method in class loci.poi.hpsf.PropertySet

Checks whether the property which the last call to PropertySet.getPropertyIntValue(int) or PropertySet.getProperty(int) tried to access was available or not.

wasNull - Variable in class loci.poi.hpsf.Section

This member is true if the last call to Section.getPropertyIntValue(long) or Section.getProperty(long) tried to access a property that was not available, else false.

wasNull() - Method in class loci.poi.hpsf.Section

Checks whether the property which the last call to Section.getPropertyIntValue(long) or Section.getProperty(long) tried to access was available or not.

wasNull() - Method in class loci.poi.hpsf.SpecialPropertySet

WAT_MAGIC_STRING - Static variable in class loci.formats.in.WATOPReader

watchProgList - Static variable in class jj2000.j2k.util.FacilityManager

The ProgressWatch instance associated to different threads

WATOPReader - Class in loci.formats.in

WATOPReader is the file format reader for WA Technology .wat files.

WATOPReader() - Constructor for class loci.formats.in.WATOPReader

Constructs a new WA Technology reader.

WATT - Static variable in class ome.units.UNITS

wave - Variable in class loci.formats.in.MetamorphReader

wavelength - Variable in class loci.formats.in.IvisionReader

wavelength - Variable in class loci.formats.in.LeicaHandler.Laser

wavelength - Variable in class loci.formats.in.NikonTiffReader

wavelength - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

wavelength - Variable in class loci.formats.in.ZeissLSMReader.IlluminationChannel

wavelength - Variable in class ome.xml.model.Laser

wavelength - Variable in class ome.xml.model.LightSourceSettings

wavelengths - Variable in class loci.formats.in.FV1000Reader

wavelengths - Variable in class loci.formats.in.IM3Reader.Spectrum

wavelengths - Variable in class loci.formats.in.MetamorphHandler

wavelet2DDecomposition(DataBlk, SubbandAn, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Performs the 2D forward wavelet transform on a subband of the initial band.

wavelet2DReconstruction(DataBlk, SubbandSyn, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Performs the 2D inverse wavelet transform on a subband of the image, on the specified component.

WaveletFilter - Interface in jj2000.j2k.wavelet

This interface defines how a wavelet filter implementation should present itself.

WaveletTransform - Interface in jj2000.j2k.wavelet

This interface defines how a forward or inverse wavelet transform should present itself.

waveletTreeDecomposition(DataBlk, SubbandAn, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Performs the forward wavelet transform on the whole band.

waveletTreeReconstruction(DataBlk, SubbandSyn, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Performs the inverse wavelet transform on the whole component.

waveMax - Variable in class loci.formats.in.PrairieMetadata.PFile

wavelengthMax attribute of this <File>.

waveMin - Variable in class loci.formats.in.PrairieMetadata.PFile

wavelengthMin attribute of this <File>.

waveNames - Variable in class loci.formats.in.MetamorphReader

wb - Variable in class loci.poi.hssf.extractor.ExcelExtractor

WB_MODE - Static variable in class loci.formats.in.CellSensReader

WB_PRESET_ID - Static variable in class loci.formats.in.CellSensReader

WB_PRESET_NAME - Static variable in class loci.formats.in.CellSensReader

wbg - Variable in class loci.formats.in.MRWReader

WBMPImageReader - Class in com.sun.media.imageioimpl.plugins.wbmp

This class is the Java Image IO plugin reader for WBMP images.

WBMPImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

Constructs WBMPImageReader from the provided ImageReaderSpi.

WBMPImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.wbmp

WBMPImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

WBMPImageWriter - Class in com.sun.media.imageioimpl.plugins.wbmp

The Java Image IO plugin writer for encoding a binary RenderedImage into a WBMP format.

WBMPImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

Constructs WBMPImageWriter based on the provided ImageWriterSpi.

WBMPImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.wbmp

WBMPImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

WBMPMetadata - Class in com.sun.media.imageioimpl.plugins.wbmp

WBMPMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

WBMPMetadataFormat - Class in com.sun.media.imageioimpl.plugins.wbmp

WBMPMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat

wbmpType - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

wbmpType - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

wc - Variable in class loci.formats.gui.DataConverter

WEIGHT_HAIRLINE - Static variable in class loci.poi.hssf.record.LineFormatRecord

WEIGHT_MEDIUM - Static variable in class loci.poi.hssf.record.LineFormatRecord

WEIGHT_NARROW - Static variable in class loci.poi.hssf.record.LineFormatRecord

WEIGHT_WIDE - Static variable in class loci.poi.hssf.record.LineFormatRecord

WELL - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

well - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate

well - Variable in class loci.formats.in.FlexReader.FlexHandler

well - Variable in class loci.formats.in.MetamorphTiffReader.Well

well - Variable in class loci.formats.in.MIASReader.AnalysisFile

WELL - Static variable in class loci.formats.ResourceNamer

Well - Class in ome.xml.model

Well() - Constructor for class ome.xml.model.Well

Default constructor.

Well(Element, OMEModel) - Constructor for class ome.xml.model.Well

Constructs Well recursively from an XML DOM tree.

Well(Well) - Constructor for class ome.xml.model.Well

Copy constructor.

well - Variable in class ome.xml.model.WellSample

wellCol - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

wellCols - Variable in class loci.formats.in.BDReader

wellCols - Variable in class loci.formats.in.InCellReader

wellColumns - Variable in class loci.formats.in.FlexReader

wellColumns - Variable in class loci.formats.in.MIASReader

wellColumns - Variable in class loci.formats.in.ScanrReader

wellCoordinates - Variable in class loci.formats.in.InCellReader

wellCount - Variable in class loci.formats.in.FlexReader

wellCount - Variable in class loci.formats.in.MetamorphTiffReader

wellCount - Variable in class loci.formats.in.ScanrReader

wellFiles - Variable in class loci.formats.in.CellWorxReader

wellIndex - Variable in class loci.formats.in.ScanrReader.ScanrHandler

wellLabels - Variable in class loci.formats.in.BDReader

wellLabels - Variable in class loci.formats.in.ScanrReader

wellLinks - Variable in class ome.xml.model.Annotation

wellList - Variable in class loci.formats.in.BDReader

wellNumber - Variable in class loci.formats.in.FlexReader

Specifies the row and column index into 'flexFiles' for a given well.

wellNumber - Variable in class loci.formats.in.MIASReader

wellNumbers - Variable in class loci.formats.in.ScanrReader

wellOriginX - Variable in class ome.xml.model.Plate

wellOriginY - Variable in class ome.xml.model.Plate

wellRow - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

wellRows - Variable in class loci.formats.in.BDReader

wellRows - Variable in class loci.formats.in.FlexReader

wellRows - Variable in class loci.formats.in.InCellReader

wellRows - Variable in class loci.formats.in.ScanrReader

wells - Variable in class loci.formats.in.CellVoyagerReader

wells - Variable in class ome.xml.model.Plate

wells - Variable in class ome.xml.model.Reagent

WellSample - Class in ome.xml.model

WellSample() - Constructor for class ome.xml.model.WellSample

Default constructor.

WellSample(Element, OMEModel) - Constructor for class ome.xml.model.WellSample

Constructs WellSample recursively from an XML DOM tree.

WellSample(WellSample) - Constructor for class ome.xml.model.WellSample

Copy constructor.

WellSampleRef - Class in ome.xml.model

WellSampleRef() - Constructor for class ome.xml.model.WellSampleRef

Default constructor.

WellSampleRef(Element, OMEModel) - Constructor for class ome.xml.model.WellSampleRef

Constructs WellSampleRef recursively from an XML DOM tree.

WellSampleRef(WellSampleRef) - Constructor for class ome.xml.model.WellSampleRef

Copy constructor.

wellSamples - Variable in class ome.xml.model.Image

wellSamples - Variable in class ome.xml.model.PlateAcquisition

wellSamples - Variable in class ome.xml.model.Well

wfs - Variable in class jj2000.j2k.decoder.DecoderSpecs

Analysis wavelet filters specifications

wfs - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

The wavelet filter specifications

wfs - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

The wavelet filter specifications

wfs - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer

Reference to the wavelet filter specifications

where(MemoryData, Object) - Method in class mdbtools.dbengine.SelectEngine

execute the where clause

where - Variable in class mdbtools.dbengine.sql.Select

where - Variable in class mdbtools.dbengine.tasks.FilterData

whereCheckRow(Data, Object) - Method in class mdbtools.dbengine.SelectEngine

Check the where constraint against a single row

whereCheckRow(Data, Object) - Method in class mdbtools.dbengine.tasks.FilterData

Check the where constraint against a single row

whereCheckRowConditon(Data, Condition) - Method in class mdbtools.dbengine.SelectEngine

Check a condtion portion of the where constraint against a single row left and right of conditon is either another condition or an equation

whereCheckRowConditon(Data, Condition) - Method in class mdbtools.dbengine.tasks.FilterData

Check a condition portion of the where constraint against a single row left and right of conditon is either another condition or an equation

whereCheckRowEquation(Data, Equation) - Method in class mdbtools.dbengine.SelectEngine

Check an equation portion of the where contraints against a single row

whereCheckRowEquation(Data, Equation) - Method in class mdbtools.dbengine.tasks.FilterData

Check an equation portion of the where contraints against a single row

whereClause(Task) - Method in class mdbtools.dbengine.SelectEngine

WHITE - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

The CCITT numerical definition of white.

white - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

WHITE_BALANCE - Static variable in class loci.formats.tiff.IFD

WHITE_BALANCE_AUTO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "WhiteBalance" tag.

WHITE_BALANCE_FINE - Static variable in class loci.formats.in.NikonReader

WHITE_BALANCE_MANUAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "WhiteBalance" tag.

WHITE_BALANCE_RGB_COEFFS - Static variable in class loci.formats.in.DNGReader

WHITE_BALANCE_RGB_COEFFS - Static variable in class loci.formats.in.NikonReader

WHITE_POINT - Static variable in class loci.formats.tiff.IFD

whiteBalance - Variable in class loci.formats.in.DNGReader

whiteBalance - Variable in class loci.formats.in.NikonReader

WIDE_FIELD - Static variable in class loci.formats.in.LegacyND2Reader

Modality types.

WIDER - Static variable in class loci.formats.in.CellSensReader

WIDER_ENABLED - Static variable in class loci.formats.in.CellSensReader

widgets - Variable in class loci.plugins.config.FlexWidgets

widgets - Variable in class loci.plugins.config.FormatEntry

widgets - Variable in class loci.plugins.config.ND2Widgets

widgets - Variable in class loci.plugins.config.PictWidgets

widgets - Variable in class loci.plugins.config.QTWidgets

widgets - Variable in class loci.plugins.config.SDTWidgets

widgets - Variable in class loci.plugins.config.TiffDelegateWidgets

width - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The image's width in pixels.

width - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The original image width.

width - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

width - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

The element values.

width - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

The image width.

width - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

width - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

width - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

The original image width.

width - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

The image width.

width - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

width - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

width - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

The original image width.

width - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

width - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Parameters in header box

width - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Image width

width - Variable in class loci.common.Region

width - Variable in class loci.formats.codec.CodecOptions

Width, in pixels, of the image.

width - Variable in class loci.formats.codec.JPEGTileDecoder.TileConsumer

width - Variable in class loci.formats.in.BaseZeissReader.Shape

width - Variable in class loci.formats.in.CellSensReader.Pyramid

width - Variable in class loci.formats.in.CellVoyagerReader.AreaInfo

width - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

width - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

width - Variable in class loci.formats.in.SDTInfo

width - Variable in class loci.formats.out.LegacyQTWriter

Frame width.

width - Variable in class loci.formats.tools.AmiraParameters

WIDTH - Static variable in class loci.tests.testng.ConversionTest

width - Variable in class ome.xml.model.Mask

width - Variable in class ome.xml.model.Rectangle

widthMinus1 - Variable in class ome.jxr.parser.DatastreamParser

willOverflow(long, long) - Static method in class loci.common.DataTools

WINDOW_CENTER - Static variable in class loci.formats.in.DicomReader

WINDOW_WIDTH - Static variable in class loci.formats.in.DicomReader

windowActivated(WindowEvent) - Method in class loci.formats.gui.ImageViewer

windowActivated(WindowEvent) - Method in class loci.tests.ImageTester

windowClosed(WindowEvent) - Method in class loci.formats.gui.ImageViewer

windowClosed(WindowEvent) - Method in class loci.tests.ImageTester

windowClosing(WindowEvent) - Method in class loci.formats.gui.ImageViewer

windowClosing(WindowEvent) - Method in class loci.tests.ImageTester

windowDeactivated(WindowEvent) - Method in class loci.formats.gui.ImageViewer

windowDeactivated(WindowEvent) - Method in class loci.tests.ImageTester

windowDeiconified(WindowEvent) - Method in class loci.formats.gui.ImageViewer

windowDeiconified(WindowEvent) - Method in class loci.tests.ImageTester

windowIconified(WindowEvent) - Method in class loci.formats.gui.ImageViewer

windowIconified(WindowEvent) - Method in class loci.tests.ImageTester

windowingFlag - Variable in class ome.jxr.parser.DatastreamParser

windowlessBox - Variable in class loci.plugins.config.ConfigWindow

windowOne - Variable in class loci.poi.hssf.model.Workbook

WindowOneRecord - Class in loci.poi.hssf.record

Title: Window1 Record

WindowOneRecord() - Constructor for class loci.poi.hssf.record.WindowOneRecord

WindowOneRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.WindowOneRecord

Constructs a WindowOne record and sets its fields appropriately.

windowOpened(WindowEvent) - Method in class loci.formats.gui.ImageViewer

windowOpened(WindowEvent) - Method in class loci.tests.ImageTester

WindowProtectRecord - Class in loci.poi.hssf.record

Title: Window Protect Record

WindowProtectRecord() - Constructor for class loci.poi.hssf.record.WindowProtectRecord

WindowProtectRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.WindowProtectRecord

Constructs a WindowProtect record and sets its fields appropriately.

WindowTools - Class in loci.plugins.util

Utility methods for managing ImageJ dialogs and windows.

WindowTools() - Constructor for class loci.plugins.util.WindowTools

windowTwo - Variable in class loci.poi.hssf.model.Sheet

WindowTwoRecord - Class in loci.poi.hssf.record

Title: Window Two Record

WindowTwoRecord() - Constructor for class loci.poi.hssf.record.WindowTwoRecord

WindowTwoRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.WindowTwoRecord

Constructs a WindowTwo record and sets its fields appropriately.

withinPixels(long) - Method in class loci.formats.in.SlidebookReader

wlz - Variable in class loci.formats.in.WlzReader

wlz - Variable in class loci.formats.out.WlzWriter

WLZ_ORG_LABEL - Static variable in class loci.formats.services.WlzServiceImpl

WLZ_SERVICE_READ - Static variable in class loci.formats.services.WlzServiceImpl

WLZ_SERVICE_UNKNOWN - Static variable in class loci.formats.services.WlzServiceImpl

WLZ_SERVICE_WRITE - Static variable in class loci.formats.services.WlzServiceImpl

wlzFP - Variable in class loci.formats.services.WlzServiceImpl

wlzObj - Variable in class loci.formats.services.WlzServiceImpl

WlzReader - Class in loci.formats.in

WlzReader is a file format reader for Woolz files.

WlzReader() - Constructor for class loci.formats.in.WlzReader

WlzService - Interface in loci.formats.services

WlzServiceImpl - Class in loci.formats.services

WlzServiceImpl() - Constructor for class loci.formats.services.WlzServiceImpl

wlzVersion - Variable in class loci.formats.services.WlzServiceImpl

WlzWriter - Class in loci.formats.out

WlzWriter is the file format writer for Woolz files.

WlzWriter() - Constructor for class loci.formats.out.WlzWriter

wmseScaling - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The WMSE scaling factor (multiplicative) to apply to the distortion measures of the data of this code-block.

Workbook - Class in loci.poi.hssf.model

Low level model implementation of a Workbook.

Workbook() - Constructor for class loci.poi.hssf.model.Workbook

Creates new Workbook with no intitialization --useless right now

workbook - Variable in class loci.poi.hssf.usermodel.EscherGraphics

workbook - Variable in class loci.poi.hssf.usermodel.HSSFDataFormat

workbook - Variable in class loci.poi.hssf.usermodel.HSSFSheet

workbook - Variable in class loci.poi.hssf.usermodel.HSSFWorkbook

this is the reference to the low level Workbook object

WorkbookRecordList - Class in loci.poi.hssf.model

WorkbookRecordList() - Constructor for class loci.poi.hssf.model.WorkbookRecordList

WORKING_DISTANCE - Static variable in class loci.formats.in.CellSensReader

workingDistance - Variable in class loci.formats.in.CellSensReader.Pyramid

workingDistance - Variable in class loci.formats.in.FV1000Reader

workingDistance - Variable in class loci.formats.in.LEOReader

workingDistance - Variable in class loci.formats.in.NikonTiffReader

workingDistance - Variable in class ome.xml.model.Objective

wp - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The encoder specifications

wp - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The encoder specs

wp - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

The source of entropy coded data

writable - Variable in class mdbtools.libmdb.MdbFile

write(int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

write(byte[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

write(byte[]) - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter

write(byte[], int, int) - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter

write(int) - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter

write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

write(boolean, boolean, IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Writes any extension blocks, the Image Descriptor, the image data, and optionally the header (Signature and Logical Screen Descriptor) and trailer (Block Terminator).

write(ImageOutputStream) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Writes this box instance into a ImageOutputStream.

write(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Throws an IOException as writing is not supported.

write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

write(IIOMetadata, IIOImage, ImageWriteParam, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

write(int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Writes the specified byte to this byte array output stream.

write(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Writes a byte to the stream.

write(byte) - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Writes a byte to the stream.

write(byte[], int, int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Writes aan array of bytes to the stream.

write(int) - Method in interface jj2000.j2k.io.RandomAccessIO

Writes a byte to the stream.

write(int) - Method in class jj2000.j2k.util.ISRandomAccessIO

Throws an IOException since this class does not implement data output.

write(byte[]) - Method in class loci.common.ByteArrayHandle

write(byte[], int, int) - Method in class loci.common.ByteArrayHandle

write(ByteBuffer) - Method in class loci.common.ByteArrayHandle

write(ByteBuffer, int, int) - Method in class loci.common.ByteArrayHandle

write(int) - Method in class loci.common.ByteArrayHandle

write(ByteBuffer) - Method in class loci.common.FileHandle

write(ByteBuffer, int, int) - Method in class loci.common.FileHandle

write(byte[]) - Method in class loci.common.FileHandle

write(byte[], int, int) - Method in class loci.common.FileHandle

write(int) - Method in class loci.common.FileHandle

write(ByteBuffer) - Method in interface loci.common.IRandomAccess

Writes up to buffer.capacity() bytes of data from the given ByteBuffer to this stream.

write(ByteBuffer, int, int) - Method in interface loci.common.IRandomAccess

Writes up to len bytes of data from the given ByteBuffer to this stream.

write(byte[]) - Method in class loci.common.NIOFileHandle

write(byte[], int, int) - Method in class loci.common.NIOFileHandle

write(ByteBuffer) - Method in class loci.common.NIOFileHandle

write(ByteBuffer, int, int) - Method in class loci.common.NIOFileHandle

write(int) - Method in class loci.common.NIOFileHandle

write(Kryo, Output) - Method in class loci.common.RandomAccessInputStream

write(byte[]) - Method in class loci.common.RandomAccessOutputStream

write(byte[], int, int) - Method in class loci.common.RandomAccessOutputStream

write(ByteBuffer) - Method in class loci.common.RandomAccessOutputStream

Writes bytes to the stream from the given buffer.

write(ByteBuffer, int, int) - Method in class loci.common.RandomAccessOutputStream

write(int) - Method in class loci.common.RandomAccessOutputStream

write(ByteBuffer) - Method in class loci.common.StreamHandle

write(ByteBuffer, int, int) - Method in class loci.common.StreamHandle

write(byte[]) - Method in class loci.common.StreamHandle

write(byte[], int, int) - Method in class loci.common.StreamHandle

write(int) - Method in class loci.common.StreamHandle

write(int, int) - Method in class loci.formats.codec.BitWriter

Deprecated.

Writes the given value using the given number of bits.

write(String) - Method in class loci.formats.codec.BitWriter

Deprecated.

Writes the bits represented by a bit string to the buffer.

write(Kryo, Output) - Method in class loci.formats.services.NetCDFServiceImpl

write(char[], int, int) - Method in class loci.plugins.config.TextAreaWriter

Writes the given characters to the associated text area component.

write(byte[], int) - Method in class loci.poi.hpsf.ClassID

Writes the class ID to a byte array in the little-endian format.

write(OutputStream, int) - Method in class loci.poi.hpsf.MutableProperty

Writes the property to an output stream.

write(OutputStream) - Method in class loci.poi.hpsf.MutablePropertySet

Writes the property set to an output stream.

write(DirectoryEntry, String) - Method in class loci.poi.hpsf.MutablePropertySet

Writes a property set to a document in a POI filesystem directory.

write(OutputStream) - Method in class loci.poi.hpsf.MutableSection

Writes this section into an output stream.

write(DirectoryEntry, String) - Method in class loci.poi.hpsf.SpecialPropertySet

write(OutputStream) - Method in class loci.poi.hpsf.SpecialPropertySet

write(OutputStream, long, Object, int) - Static method in class loci.poi.hpsf.VariantSupport

Writes a variant value to an output stream.

write(OutputStream) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Method write - write out this workbook to an Outputstream.

write(int) - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Writes the specified byte to this output stream.

write(byte[]) - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Writes b.length bytes from the specified byte array to this output stream.

write(byte[], int, int) - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Writes len bytes from the specified byte array starting at offset off to this output stream.

write1Bit() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

write4Bit() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

write8Bit() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

WRITE_ABORTED - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

When the writing is aborted, RenderedImageSrc throws a RuntimeException.

writeAbbreviatedStream - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Whether to write abbreviated JPEG streams (default == false).

writeAborted(ImageWriter) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter

writeAccess - Variable in class loci.poi.hssf.model.Workbook

WriteAccessRecord - Class in loci.poi.hssf.record

Title: Write Access Record

WriteAccessRecord() - Constructor for class loci.poi.hssf.record.WriteAccessRecord

WriteAccessRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.WriteAccessRecord

Constructs a WriteAccess record and sets its fields appropriately.

writeApplicationExtension(GIFWritableImageMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeArraySlice(String, MDByteArray, long[]) - Method in interface loci.formats.services.JHDFService

Writes an array as sub-slice into an existing HDF5 dataset

writeArraySlice(String, MDShortArray, long[]) - Method in interface loci.formats.services.JHDFService

Writes an array as sub-slice into an existing HDF5 dataset

writeArraySlice(String, MDIntArray, long[]) - Method in interface loci.formats.services.JHDFService

Writes an array as sub-slice into an existing HDF5 dataset

writeArraySlice(String, MDByteArray, long[]) - Method in class loci.formats.services.JHDFServiceImpl

writeArraySlice(String, MDShortArray, long[]) - Method in class loci.formats.services.JHDFServiceImpl

writeArraySlice(String, MDIntArray, long[]) - Method in class loci.formats.services.JHDFServiceImpl

writeAtom(int, String) - Method in class loci.formats.out.QTWriter

Write the atom length and type.

writeBit(int) - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Writes a bit to the buffer at the current position.

writeBit(int) - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput

Write a bit to the output.

writeBits(int, int) - Method in class com.sun.media.imageioimpl.common.BitFile

writeBits(int, int) - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Writes the n least significant bits of 'bits' to the buffer at the current position.

writeBits(int[], int) - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput

Writes to the bit stream the symbols contained in the 'symbuf' buffer.

writeBits(int, int) - Method in class loci.common.RandomAccessOutputStream

Writes the given value using the given number of bits.

writeBits(String) - Method in class loci.common.RandomAccessOutputStream

Writes the bits represented by a bit string to the buffer.

writeBlocks(byte[]) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeBlocks(OutputStream) - Method in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

write the blocks to a stream

writeBlocks(OutputStream) - Method in class loci.poi.poifs.filesystem.POIFSDocument

Write the storage to an OutputStream

writeBlocks(OutputStream) - Method in class loci.poi.poifs.property.PropertyTable

Write the storage to an OutputStream

writeBlocks(OutputStream) - Method in class loci.poi.poifs.storage.BigBlock

Write the storage to an OutputStream

writeBlocks(OutputStream) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Write the storage to an OutputStream

writeBlocks(OutputStream) - Method in interface loci.poi.poifs.storage.BlockWritable

Write the storage to an OutputStream

writeBlocks(OutputStream) - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Write the storage to an OutputStream

writeBlocks(OutputStream) - Method in class loci.poi.poifs.storage.SmallDocumentBlock

Write the storage to an OutputStream

writeBoolean(boolean) - Method in class loci.common.ByteArrayHandle

writeBoolean(boolean) - Method in class loci.common.FileHandle

writeBoolean(boolean) - Method in class loci.common.NIOFileHandle

writeBoolean(boolean) - Method in class loci.common.RandomAccessOutputStream

writeBoolean(boolean) - Method in class loci.common.StreamHandle

writeBox(IIOMetadataNode) - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter

writeBox - Variable in class loci.formats.codec.JPEG2000CodecOptions

Whether or not to write a boxed stream, i.e.

writeByte(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Throws an IOException as writing is not supported.

writeByte(ImageOutputStream, byte) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

Writes a byte to the output in ASCII format.

writeByte(int) - Method in interface jj2000.j2k.io.BinaryDataOutput

Should write the byte value of v (i.e., 8 least significant bits) to the output.

writeByte(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Writes the byte value of v (i.e., 8 least significant bits) to the output.

writeByte(int) - Method in class jj2000.j2k.util.ISRandomAccessIO

Throws an IOException since this class does not implement data output.

writeByte(int) - Method in class loci.common.ByteArrayHandle

writeByte(int) - Method in class loci.common.FileHandle

writeByte(int) - Method in class loci.common.NIOFileHandle

writeByte(int) - Method in class loci.common.RandomAccessOutputStream

writeByte(int) - Method in class loci.common.StreamHandle

writeBytes(String) - Method in class loci.common.ByteArrayHandle

writeBytes(String) - Method in class loci.common.FileHandle

writeBytes(String) - Method in class loci.common.NIOFileHandle

writeBytes(String) - Method in class loci.common.RandomAccessOutputStream

writeBytes(String) - Method in class loci.common.StreamHandle

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.AddPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.Area3DPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.AreaErrPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.AreaNAPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.AreaNPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.AreaNVPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.AreaPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.ArrayPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.AttrPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.BoolPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.ConcatPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.DividePtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.EqualPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.ErrPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.ExpPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.FuncPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.FuncVarPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Write the sid to an array

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.IntersectionPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.IntPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.LessEqualPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.LessThanPtg

Write the sid to an array

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.MemAreaPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.MemErrPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.MemFuncPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.MissingArgPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.MultiplyPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.NamePtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.NameXPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.NotEqualPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.NumberPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.PercentPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.PowerPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.Ptg

write this Ptg to a byte array

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.RangePtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.Ref3DPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.ReferencePtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.RefErrorPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.RefNAPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.RefNPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.RefNVPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.StringPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.SubtractPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.UnionPtg

writeBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.UnknownPtg

writeChar(int) - Method in class loci.common.ByteArrayHandle

writeChar(int) - Method in class loci.common.FileHandle

writeChar(int) - Method in class loci.common.NIOFileHandle

writeChar(int) - Method in class loci.common.RandomAccessOutputStream

writeChar(int) - Method in class loci.common.StreamHandle

writeChars(char[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

writeChars(String) - Method in class loci.common.ByteArrayHandle

writeChars(String) - Method in class loci.common.FileHandle

writeChars(String) - Method in class loci.common.NIOFileHandle

writeChars(String) - Method in class loci.common.RandomAccessOutputStream

writeChars(String) - Method in class loci.common.StreamHandle

writeCOC(boolean, int, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes COC marker segment .

writeCOD(boolean, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes COD marker segment.

writeCodeStreamOnly - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies whether write only the jpeg2000 code stream, i.e, no any box is written.

writeCOM() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Write a COM marker segment adding some comments to the codestream.

writeCommentExtension(GIFWritableImageMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeCompPosResLy(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Write a piece of bit stream according to the COMP_POS_RES_LY_PROG progression mode and between given bounds

writeConfigFile() - Method in class loci.tests.testng.FormatReaderTest

writeContiguousCodeStreamBox() - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter

This method writes the Contiguous codestream box

writeContinueHeader(byte[], int, int) - Method in class loci.poi.hssf.record.DrawingGroupRecord

writeContinueIfRequired(UnicodeString.UnicodeRecordStats, int, int, byte[]) - Method in class loci.poi.hssf.record.UnicodeString

writeData(String, CoreMetadata, String, OMETiffWriter) - Method in class loci.formats.tools.MakeTestOmeTiff

writeData(int, byte[], byte[]) - Method in class loci.poi.hssf.record.DrawingGroupRecord

writeData(OutputStream) - Method in class loci.poi.poifs.property.Property

Write the raw data to an OutputStream.

writeData(OutputStream) - Method in class loci.poi.poifs.storage.BATBlock

Write the block's data to an OutputStream

writeData(OutputStream) - Method in class loci.poi.poifs.storage.BigBlock

Write the block's data to an OutputStream

writeData(OutputStream) - Method in class loci.poi.poifs.storage.DocumentBlock

Write the block's data to an OutputStream

writeData(OutputStream) - Method in class loci.poi.poifs.storage.HeaderBlockWriter

Write the block's data to an OutputStream

writeData(OutputStream) - Method in class loci.poi.poifs.storage.PropertyBlock

Write the block's data to an OutputStream

writeDictionary(OutputStream, Map, int) - Static method in class loci.poi.hpsf.MutableSection

Writes the section's dictionary.

writeDouble(double) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Throws an IOException as writing is not supported.

writeDouble(double) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Writes the IEEE double value v (i.e., 64 bits) to the output.

writeDouble(double) - Method in interface jj2000.j2k.io.BinaryDataOutput

Should write the IEEE double value v (i.e., 64 bits) to the output.

writeDouble(double) - Method in class jj2000.j2k.util.ISRandomAccessIO

Throws an IOException since this class does not implement data output.

writeDouble(double) - Method in class loci.common.ByteArrayHandle

writeDouble(double) - Method in class loci.common.FileHandle

writeDouble(double) - Method in class loci.common.NIOFileHandle

writeDouble(double) - Method in class loci.common.RandomAccessOutputStream

writeDouble(double) - Method in class loci.common.StreamHandle

writeDoubles(double[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

writeEmbedded(IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

writeFCTL(int, int) - Method in class loci.formats.out.APNGWriter

writeFile(File, OME) - Method in class ome.specification.XMLWriter

Writes the data to the file.

writeFile(File, OME, boolean) - Method in class ome.specification.XMLWriter

Writes the data to the file.

writeFileFormat() - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter

This method reads the codestream and writes the file format wrapper and the codestream to the same file

writeFileHeader(int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

writeFilesystem(OutputStream) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Write the filesystem out

writeFiller(int, byte) - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

write the rest of the document's data (fill in at the end)

writeFloat(float) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Throws an IOException as writing is not supported.

writeFloat(float) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Writes the IEEE float value v (i.e., 32 bits) to the output.

writeFloat(float) - Method in interface jj2000.j2k.io.BinaryDataOutput

Should write the IEEE float value v (i.e., 32 bits) to the output.

writeFloat(float) - Method in class jj2000.j2k.util.ISRandomAccessIO

Throws an IOException since this class does not implement data output.

writeFloat(float) - Method in class loci.common.ByteArrayHandle

writeFloat(float) - Method in class loci.common.FileHandle

writeFloat(float) - Method in class loci.common.NIOFileHandle

writeFloat(float) - Method in class loci.common.RandomAccessOutputStream

writeFloat(float) - Method in class loci.common.StreamHandle

writeFloats(float[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

writeFooter() - Method in class loci.formats.out.APNGWriter

writeFooter() - Method in class loci.formats.out.JavaWriter

writeFooter() - Method in class loci.formats.out.QTWriter

writeGraphicControlExtension(int, boolean, boolean, int, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeGraphicControlExtension(GIFWritableImageMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeHeader(String, int, int, int, int, int, boolean, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeHeader(IIOMetadata, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeHeader() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

writeHeader() - Method in class loci.formats.out.EPSWriter

writeHeader() - Method in class loci.formats.out.JavaWriter

writeHeader() - Method in class loci.formats.tiff.TiffSaver

Writes the TIFF file header.

writeHeader(byte[], int, int) - Method in class loci.poi.hssf.record.DrawingGroupRecord

writeHidden(ColumnInfoRecord, int, boolean) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

writeHidden(RowRecord, int, boolean) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

writeIFD(IFD, long) - Method in class loci.formats.tiff.TiffSaver

writeIFDValue(RandomAccessOutputStream, long, int, Object) - Method in class loci.formats.tiff.TiffSaver

Writes the given IFD value to the given output object.

writeImage(RenderedImage, GIFWritableImageMetadata, ImageWriteParam, byte[], Rectangle, Dimension) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Writes any extension blocks, the Image Descriptor, and the image data

writeImage(OutputStream, BufferedImage, JPEG2000CodecOptions) - Method in interface loci.formats.services.JAIIIOService

Writes an image using JAI Image I/O using the JPEG 2000 codec.

writeImage(OutputStream, BufferedImage, JPEG2000CodecOptions) - Method in class loci.formats.services.JAIIIOServiceImpl

writeImage(byte[][], IFDList, int) - Method in class loci.formats.tiff.TiffSaver

writeImage(byte[], IFD, int, int, boolean) - Method in class loci.formats.tiff.TiffSaver

writeImage(byte[], IFD, int, int, int, int, int, int, boolean) - Method in class loci.formats.tiff.TiffSaver

Writes to any rectangle from the passed block.

writeImage(byte[], IFD, int, int, int, int, int, int, boolean, Integer, boolean) - Method in class loci.formats.tiff.TiffSaver

writeImageDescriptor(int, int, int, int, boolean, boolean, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeImageDescriptor(GIFWritableImageMetadata, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeImageIFD(IFD, int, byte[][], int, boolean, int, int) - Method in class loci.formats.tiff.TiffSaver

Performs the actual work of dealing with IFD data and writing it to the TIFF for a given image or sub-image.

writeInfoHeader(int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

writeInsert(int, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

writeInt(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Throws an IOException as writing is not supported.

writeInt(int) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Writes the int value of v (i.e., the 32 bits) to the output.

writeInt(int) - Method in interface jj2000.j2k.io.BinaryDataOutput

Should write the int value of v (i.e., the 32 bits) to the output.

writeInt(int) - Method in class jj2000.j2k.util.ISRandomAccessIO

Throws an IOException since this class does not implement data output.

writeInt(int) - Method in class loci.common.ByteArrayHandle

writeInt(int) - Method in class loci.common.FileHandle

writeInt(int) - Method in class loci.common.NIOFileHandle

writeInt(int) - Method in class loci.common.RandomAccessOutputStream

writeInt(int) - Method in class loci.common.StreamHandle

writeInteger(ImageOutputStream, int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

Writes an integer to the output in ASCII format.

writeInts(int[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

writeIntValue(RandomAccessOutputStream, long) - Method in class loci.formats.tiff.TiffSaver

Write the given value to the given RandomAccessOutputStream.

writeLine(String) - Method in class loci.common.RandomAccessOutputStream

Writes the given string followed by a newline character.

writeLong(long) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Throws an IOException as writing is not supported.

writeLong(long) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Writes the long value of v (i.e., the 64 bits) to the output.

writeLong(long) - Method in interface jj2000.j2k.io.BinaryDataOutput

Should write the long value of v (i.e., the 64 bits) to the output.

writeLong(long) - Method in class jj2000.j2k.util.ISRandomAccessIO

Throws an IOException since this class does not implement data output.

writeLong(long) - Method in class loci.common.ByteArrayHandle

writeLong(long) - Method in class loci.common.FileHandle

writeLong(long) - Method in class loci.common.NIOFileHandle

writeLong(long) - Method in class loci.common.RandomAccessOutputStream

writeLong(long) - Method in class loci.common.StreamHandle

writeLongs(long[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

writeLyResCompPos(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Write a piece of bit stream according to the LY_RES_COMP_POS_PROG progression mode and between given bounds

writeMainQCC(int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes QCC marker segment in main header.

writeMainQCD() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes QCD marker segment in main header.

writeMaskToPalette(int, int, byte[], byte[], byte[], byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

writeMetadata(J2KMetadata) - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter

writeNewCodestream(BufferedRandomAccessFile) - Method in class jj2000.j2k.util.CodestreamManipulator

This method writes the new codestream to the file.

writePacketBody(byte[], int, boolean, boolean, int) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Writes a packet body to the bit stream and returns the number of bytes used by this body .If in simulation mode then no data is written to the bit stream but the number of bytes is calculated.

writePacketBody(byte[], int, boolean, boolean, int) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Writes a packet body to the bit stream and returns the number of bytes used by this body .If in simulation mode then no data is written to the bit stream but the number of bytes is calculated.

writePacketHead(byte[], int, boolean, boolean, boolean) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Writes a packet head to the bit stream and returns the number of bytes used by this header.

writePacketHead(byte[], int, boolean, boolean, boolean) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Writes a packet head to the bit stream and returns the number of bytes used by this header.

writePixels(int, int, int, int[], int, int, IndexColorModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

writePixels(String, byte[], int, int, int, int) - Method in class loci.formats.out.APNGWriter

writePlainTextExtension(GIFWritableImageMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writePlane(String, byte[], int, int) - Method in class loci.formats.out.JavaWriter

writePlane(String, short[], int, int) - Method in class loci.formats.out.JavaWriter

writePlane(String, int[], int, int) - Method in class loci.formats.out.JavaWriter

writePlane(String, long[], int, int) - Method in class loci.formats.out.JavaWriter

writePlane(String, float[], int, int) - Method in class loci.formats.out.JavaWriter

writePlane(String, double[], int, int) - Method in class loci.formats.out.JavaWriter

writePLTE() - Method in class loci.formats.out.APNGWriter

writePOC(boolean, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes POC marker segment.

writePosCompResLy(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Write a piece of bit stream according to the COMP_POS_RES_LY_PROG progression mode and between given bounds

writeProperties(POIFSFileSystem) - Method in class loci.poi.POIDocument

Writes out the standard Documment Information Properties (HPSF)

writeProperties(POIFSFileSystem, List) - Method in class loci.poi.POIDocument

Writes out the standard Documment Information Properties (HPSF)

writePropertySet(String, PropertySet, POIFSFileSystem) - Method in class loci.poi.POIDocument

Writes out a given ProperySet

writeProtect - Variable in class loci.poi.hssf.model.Workbook

WriteProtectRecord - Class in loci.poi.hssf.record

Title: Write Protect Record

WriteProtectRecord() - Constructor for class loci.poi.hssf.record.WriteProtectRecord

WriteProtectRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.WriteProtectRecord

Constructs a WriteAccess record and sets its fields appropriately.

writeProtectWorkbook(String, String) - Method in class loci.poi.hssf.model.Workbook

protect a workbook with a password (not encypted, just sets writeprotect flags and the password.

writeProtectWorkbook(String, String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

protect a workbook with a password (not encypted, just sets writeprotect flags and the password.

writer - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The ImageWriter calling this TIFFCompressor.

writer - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Used to process abortion.

writer - Variable in class loci.formats.gui.DataConverter

writer - Variable in class loci.formats.WriterWrapper

FormatWriter used to write the file.

writer - Variable in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

writer - Variable in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

writer - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

writer - Variable in class loci.tests.testng.Jpeg2000GrindTest

writeRaster - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

Indicates a raster rather than a RenderedImage to be encoded.

writeRaster(Raster) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

writeRasterData(RenderedImage, Rectangle, Dimension, ImageWriteParam, boolean) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writerClassName - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

writerClassName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

writeResLyCompPos(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Write a piece of bit stream according to the RES_LY_COMP_POS_PROG progression mode and between given bounds

writeResPosCompLy(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Write a piece of bit stream according to the RES_POS_COMP_LY_PROG progression mode and between given bounds

writeRGN(int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes the RGN marker segment in the tile header.

writeRLE(int, int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

writeRotationMatrix() - Method in class loci.formats.out.QTWriter

Write the 3x3 matrix that describes how to rotate the image.

writeRows(RenderedImage, LZWCompressor, int, int, int, int, int, int, int, int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeRowsOpt(byte[], int, int, LZWCompressor, int, int, int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writers - Variable in class loci.formats.ImageWriter

List of supported file format writers.

writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

WriterWrapper - Class in loci.formats

Abstract superclass of writer logic that wraps other writers.

WriterWrapper() - Constructor for class loci.formats.WriterWrapper

Constructs a writer wrapper around a new image writer.

WriterWrapper(IFormatWriter) - Constructor for class loci.formats.WriterWrapper

Constructs a writer wrapper around the given writer.

writeSetup(int) - Method in class loci.common.NIOFileHandle

writeShort(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Throws an IOException as writing is not supported.

writeShort(int) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile

Writes the short value of v (i.e., 16 least significant bits) to the output.

writeShort(int) - Method in interface jj2000.j2k.io.BinaryDataOutput

Should write the short value of v (i.e., 16 least significant bits) to the output.

writeShort(int) - Method in class jj2000.j2k.util.ISRandomAccessIO

Throws an IOException since this class does not implement data output.

writeShort(int) - Method in class loci.common.ByteArrayHandle

writeShort(int) - Method in class loci.common.FileHandle

writeShort(int) - Method in class loci.common.NIOFileHandle

writeShort(int) - Method in class loci.common.RandomAccessOutputStream

writeShort(int) - Method in class loci.common.StreamHandle

writeShorts(short[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

writeSIZ() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes SIZ marker segment of the codestream header.

writeSize(int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

writeSOC() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Start Of Codestream marker (SOC) signalling the beginning of a codestream.

writeSSTHeader(UnicodeString.UnicodeRecordStats, byte[], int, int) - Method in class loci.poi.hssf.record.SSTRecordHeader

Writes out the SST record.

writeString(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Write out the string just uncompressed.

writeString(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Write out the string just uncompressed.

writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.ContainerRecord

writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.FloatIM3Record

writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.IM3Record

Write a summary of the contents of the record

writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.IntIM3Record

writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.StringIM3Record

writeSummary() - Method in class loci.formats.in.IM3Reader

Write a summary of each field in the IM3 file to the writer

writeSuperBox(IIOMetadataNode) - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter

writeTIFFFieldToStream(TIFFField, ImageOutputStream) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

writeTile(Rectangle, TIFFCompressor) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

writeTileQCC(int, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes QCC marker segment in tile header.

writeTileQCD(int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes QCD marker segment in tile header.

writeTime - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The wall time for the writing of layers.

writeTo(ImageOutputStream) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor.IIOByteArrayOutputStream

writeTo(BinaryDataOutput) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes the header to the specified BinaryDataOutput.

writeTo(OutputStream) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes the header to the specified OutputStream.

writeToBytes(byte[]) - Method in class loci.poi.util.ByteField

write the value out to an array of bytes at the appropriate offset

writeToBytes(byte[]) - Method in interface loci.poi.util.FixedField

write the value out to an array of bytes at the appropriate offset

writeToBytes(byte[]) - Method in class loci.poi.util.IntegerField

write the value out to an array of bytes at the appropriate offset

writeToBytes(byte[]) - Method in class loci.poi.util.LongField

write the value out to an array of bytes at the appropriate offset

writeToBytes(byte[]) - Method in class loci.poi.util.ShortField

write the value out to an array of bytes at the appropriate offset

writeTokenValueBytes(byte[], int) - Method in class loci.poi.hssf.record.formula.ArrayPtg

writeToSequence(IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeToSequence(IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

writeToStream(ImageOutputStream) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

writeToStream(OutputStream, short) - Static method in class loci.poi.hpsf.TypeWriter

Writes a two-byte value (short) to an output stream.

writeToStream(OutputStream, int) - Static method in class loci.poi.hpsf.TypeWriter

Writes a four-byte value to an output stream.

writeToStream(OutputStream, long) - Static method in class loci.poi.hpsf.TypeWriter

Writes a eight-byte value to an output stream.

writeToStream(OutputStream, ClassID) - Static method in class loci.poi.hpsf.TypeWriter

Writes a 16-byte ClassID to an output stream.

writeToStream(OutputStream, Property[], int) - Static method in class loci.poi.hpsf.TypeWriter

Writes an array of Property instances to an output stream according to the Horrible Property Stream Format.

writeToStream(OutputStream, double) - Static method in class loci.poi.hpsf.TypeWriter

Writes a double value value to an output stream.

writeTrailer() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

writeUIntToStream(OutputStream, long) - Static method in class loci.poi.hpsf.TypeWriter

Writes an unsigned four-byte value to an output stream.

writeUnsupportedTypeMessage(UnsupportedVariantTypeException) - Static method in class loci.poi.hpsf.VariantSupport

Writes a warning to System.err that a variant type is unsupported by HPSF.

writeUShortToStream(OutputStream, int) - Static method in class loci.poi.hpsf.TypeWriter

Writes an unsigned two-byte value to an output stream.

writeUTF(String) - Method in class loci.common.ByteArrayHandle

writeUTF(String) - Method in class loci.common.FileHandle

writeUTF(String) - Method in class loci.common.NIOFileHandle

writeUTF(String) - Method in class loci.common.RandomAccessOutputStream

writeUTF(String) - Method in class loci.common.StreamHandle

writeXML(OutputStream, Document) - Static method in class loci.common.xml.XMLTools

Writes the specified DOM to the given output stream.

writeXML(OutputStream, Document, boolean) - Static method in class loci.common.xml.XMLTools

Writes the specified DOM to the given output stream.

writeXML(Result, Document, boolean) - Static method in class loci.common.xml.XMLTools

Writes the specified DOM to the given stream.

writeXML() - Method in class loci.tests.testng.FormatReaderTest

WritingNotSupportedException - Exception in loci.poi.hpsf

This exception is thrown when trying to write a (yet) unsupported variant type.

WritingNotSupportedException(long, Object) - Constructor for exception loci.poi.hpsf.WritingNotSupportedException

Constructor

written - Variable in class loci.poi.poifs.filesystem.DocumentOutputStream

WRONG_POS - Static variable in class loci.poi.hssf.util.RangeAddress

wroteSequenceHeader - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Whether the header has been written.

WSBoolRecord - Class in loci.poi.hssf.record

Title: WSBool Record.

WSBoolRecord() - Constructor for class loci.poi.hssf.record.WSBoolRecord

WSBoolRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.WSBoolRecord

Constructs a WSBool record and sets its fields appropriately.

wSize - Variable in class loci.formats.in.DeltavisionReader

Size of one wave in the extended header.

WT_DECOMP_DYADIC - Static variable in class jj2000.j2k.wavelet.analysis.ForwardWT

ID for the dyadic wavelet tree decomposition (also called "Mallat" in JPEG 2000): 0x00.

WT_DECOMP_DYADIC - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

ID for the dyadic wavelet tree decomposition (also called "Mallat" in JPEG 2000): 0x00.

WT_DECOMP_PACKET - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

ID for the PACKET (as defined in JPEG 2000) wavelet tree decomposition (2 levels of decomposition in the high bands and some specified number for the lowest LL band): 0x01.

WT_DECOMP_SPACL - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

ID for the SPACL (as defined in JPEG 2000) wavelet tree decomposition (1 level of decomposition in the high bands and some specified number for the lowest LL band): 0x02.

WT_FILTER_FLOAT_CONVOL - Static variable in interface jj2000.j2k.wavelet.WaveletFilter

The ID for floatring-poitn convolution implementations

WT_FILTER_FLOAT_LIFT - Static variable in interface jj2000.j2k.wavelet.WaveletFilter

The ID for floating-point lifting spteps implementations

WT_FILTER_INT_LIFT - Static variable in interface jj2000.j2k.wavelet.WaveletFilter

The ID for integer lifting spteps implementations

WT_IMPL_FULL - Static variable in interface jj2000.j2k.wavelet.WaveletTransform

ID for full-page based implementations of wavelet transforms.

WT_IMPL_LINE - Static variable in interface jj2000.j2k.wavelet.WaveletTransform

ID for line based implementations of wavelet transforms.

WT_ORIENT_HH - Static variable in class jj2000.j2k.wavelet.Subband

The ID for the HH orientation

WT_ORIENT_HL - Static variable in class jj2000.j2k.wavelet.Subband

The ID for the HL (horizontal high-pass) orientation

WT_ORIENT_LH - Static variable in class jj2000.j2k.wavelet.Subband

The ID for the LH (vertical high-pass) orientation

WT_ORIENT_LL - Static variable in class jj2000.j2k.wavelet.Subband

The ID for the LL orientation

WTDecompSpec - Class in jj2000.j2k.wavelet

This class holds the decomposition type to be used in each part of the image; the default one, the component specific ones, the tile default ones and the component-tile specific ones.

WTDecompSpec(int, int, int) - Constructor for class jj2000.j2k.wavelet.WTDecompSpec

Constructs a new 'WTDecompSpec' for the specified number of components and tiles, with the given main default decomposition type and number of levels.

WTFilterSpec - Class in jj2000.j2k.wavelet

This is the generic class from which the ones that hold the analysis or synthesis filters to be used in each part of the image derive.

WTFilterSpec(int) - Constructor for class jj2000.j2k.wavelet.WTFilterSpec

Constructs a 'WTFilterSpec' object, initializing all the components and tiles to the 'FILTER_SPEC_MAIN_DEF' spec type, for the specified number of components and tiles.

X

x - Variable in class jj2000.j2k.roi.encoder.ROI

x coordinate of center of circular ROI

x - Variable in class loci.common.Region

x - Variable in class loci.formats.in.BioRadReader.Note

x - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo

x - Variable in class loci.formats.in.InCellReader

x - Variable in class loci.formats.in.LeicaHandler.ROI

x - Variable in class loci.formats.in.LIFReader.ROI

x - Variable in class loci.formats.in.OperettaReader.Plane

x - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

x - Variable in class loci.formats.TileStitcher.TileCoordinate

x - Variable in class loci.poi.hssf.util.PaneInformation

x - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

x - Variable in class ome.xml.model.Ellipse

x - Variable in class ome.xml.model.Label

x - Variable in class ome.xml.model.Mask

x - Variable in class ome.xml.model.Point

x - Variable in class ome.xml.model.Rectangle

x - Variable in class ome.xml.model.StageLabel

x0 - Variable in class loci.formats.tools.AmiraParameters

x0siz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

x0siz - Variable in class jj2000.j2k.image.Tiler

Horizontal coordinate of the upper left hand reference grid point.

x1 - Variable in class loci.formats.in.BaseZeissReader.Shape

x1 - Variable in class loci.formats.tools.AmiraParameters

x1 - Variable in class loci.poi.hssf.usermodel.HSSFPatriarch

x1 - Variable in class loci.poi.hssf.usermodel.HSSFShapeGroup

x1 - Variable in class ome.xml.model.Line

x2 - Variable in class loci.formats.in.BaseZeissReader.Shape

x2 - Variable in class loci.poi.hssf.usermodel.HSSFPatriarch

x2 - Variable in class loci.poi.hssf.usermodel.HSSFShapeGroup

x2 - Variable in class ome.xml.model.Line

X_BINNING - Static variable in class loci.formats.in.CellSensReader

X_IMG_STRING - Static variable in class loci.formats.in.SDTInfo

X_KEY - Static variable in class loci.formats.in.LiFlimReader

X_POS_TAG - Static variable in class loci.formats.in.SlidebookTiffReader

X_POSITION - Static variable in class loci.formats.tiff.IFD

X_POSITION - Static variable in class loci.tests.testng.Configuration

X_POSITION_UNIT - Static variable in class loci.tests.testng.Configuration

X_RESOLUTION - Static variable in class loci.formats.tiff.IFD

X_STRING - Static variable in class loci.formats.in.SDTInfo

xAxis - Variable in class loci.formats.in.SDTInfo

X axis representation (SPC-930).

xcal - Variable in class loci.formats.in.OpenlabReader

xCoordinates - Variable in class loci.formats.in.ZeissLSMReader

xcrg - Variable in class jj2000.j2k.codestream.HeaderInfo.CRG

xDim - Variable in class loci.formats.out.AVIWriter

xf - Variable in class loci.poi.hssf.record.RkRec

XF_CELL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

XF_STYLE - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

xfpos - Variable in class loci.poi.hssf.model.WorkbookRecordList

xIndex - Variable in class loci.formats.in.TextReader

Column index for X coordinate.

xLen - Variable in class loci.formats.in.LiFlimReader

xLocation - Variable in class loci.formats.in.VolocityReader.Stack

xmax - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

xmin - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

XML - Static variable in class loci.formats.in.MicromanagerReader

Optional file containing additional acquisition parameters.

xml - Variable in class loci.formats.in.ZeissCZIReader.Metadata

xml - Variable in class loci.plugins.util.DataBrowser

XML_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

XML_FILE - Static variable in class loci.formats.in.OperettaReader

XML_FILE - Static variable in class loci.formats.in.ScanrReader

XML_NAME - Static variable in class loci.formats.in.ZeissTIFFReader

XML_NS - Static variable in class ome.specification.XMLWriter

The XML namespace.

XML_SCHEMA_PATH - Static variable in class loci.common.xml.XMLTools

XML_SUFFIX - Static variable in class loci.formats.in.PrairieReader

XML_SUFFIX - Static variable in class loci.formats.in.TCSReader

XML_TAG - Static variable in class loci.formats.in.ImaconReader

XML_TAG - Static variable in class loci.formats.in.OperettaReader

XMLAnnotation - Class in ome.xml.model

XMLAnnotation() - Constructor for class ome.xml.model.XMLAnnotation

Default constructor.

XMLAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.XMLAnnotation

Constructs XMLAnnotation recursively from an XML DOM tree.

XMLAnnotation(XMLAnnotation) - Constructor for class ome.xml.model.XMLAnnotation

Copy constructor.

xmlAnnotations - Variable in class ome.xml.model.StructuredAnnotations

XMLBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a XML box of JPEG JP2 file format.

XMLBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

Create a Box from its content.

XMLBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

Constructs a UUIDListBox based on the provided org.w3c.dom.Node.

xmlBuffer - Variable in class loci.formats.in.OMEXMLReader.OMEXMLHandler

XMLCellRenderer - Class in loci.formats.gui

A tree cell renderer for displaying syntax highlighted XML in a JTree.

XMLCellRenderer() - Constructor for class loci.formats.gui.XMLCellRenderer

XMLCellRenderer.XMLItem - Class in loci.formats.gui

Cell renderer item for use as DefaultMutableTreeNode user object.

XMLCellRenderer.XMLItem(Node) - Constructor for class loci.formats.gui.XMLCellRenderer.XMLItem

xmlFile - Variable in class loci.formats.in.MicromanagerReader.Position

xmlFile - Variable in class loci.formats.in.PrairieReader

The associated XML files.

xmlFile - Variable in class loci.formats.in.TCSReader

xmlFiles - Variable in class loci.formats.in.APLReader

xmlFragments - Variable in class loci.formats.out.OMEXMLWriter

XMLIndent - Class in loci.formats.tools

Indents XML to be more readable.

XMLIndent() - Constructor for class loci.formats.tools.XMLIndent

XMLMockObjects - Class in ome.specification

Creates XML objects for the 2010-06 schema.

XMLMockObjects() - Constructor for class ome.specification.XMLMockObjects

Creates a new instance.

xmlname - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo

XMLTools - Class in loci.common.xml

A utility class for working with XML.

XMLTools() - Constructor for class loci.common.xml.XMLTools

XMLTools.XMLListener - Class in loci.common.xml

ErrorListener implementation that logs errors and warnings using SLF4J.

XMLTools.XMLListener() - Constructor for class loci.common.xml.XMLTools.XMLListener

XMLValidate - Class in loci.formats.tools

Attempts to validate the given XML files.

XMLValidate() - Constructor for class loci.formats.tools.XMLValidate

XMLWindow - Class in loci.formats.gui

A window containing syntax highlighted XML as a tree.

XMLWindow() - Constructor for class loci.formats.gui.XMLWindow

XMLWindow(String) - Constructor for class loci.formats.gui.XMLWindow

xmlWindow - Variable in class loci.plugins.in.DisplayHandler

XMLWriter - Class in ome.specification

Methods to write the XML tags to the files.

XMLWriter() - Constructor for class ome.specification.XMLWriter

Creates a new instance.

Xn - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

xoff - Variable in class loci.formats.tools.MakeTestOmeTiff.TextLine

xOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Source to destination transform

xOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The source -> destination transformation

xOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The source -> destination transformation

xOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The subsampling parameters.

xOffset - Variable in class loci.formats.in.NativeND2Reader

xor(int) - Method in class loci.plugins.util.RecordedImageProcessor

xOrigin - Variable in class loci.formats.in.TiffReader

xPad - Variable in class loci.formats.out.AVIWriter

xpixels - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo

xPixelsPerMeter - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

xPoints - Variable in class loci.poi.hssf.usermodel.HSSFPolygon

xPos - Variable in class loci.formats.in.LeicaHandler

xPos - Variable in class loci.formats.in.OpenlabReader

xPositions - Variable in class loci.formats.in.FlexReader

xQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The x position of the last code block before ncb quit reached

xref - Variable in class jj2000.j2k.codestream.PrecCoordInfo

Horizontal upper left coordinate in the reference grid

xrsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

XSI_NS - Static variable in class loci.common.xml.XMLTools

XSI_NS - Static variable in class ome.specification.XMLWriter

The XSI namespace.

XSI_NS - Static variable in class ome.xml.meta.AbstractOMEXMLMetadata

XSI namespace.

xsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

xSize - Variable in class loci.formats.in.LEOReader

xSize - Variable in class loci.formats.in.QuesantReader

xSizes - Variable in class loci.formats.in.FlexReader

XSLT_2003FC - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_200706 - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_200802 - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_200809 - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_200909 - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_201004 - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_201006 - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_201106 - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_201206 - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_201306 - Static variable in class loci.formats.services.OMEXMLServiceImpl

XSLT_PATH - Static variable in class loci.formats.services.OMEXMLServiceImpl

xt0siz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

xt0siz - Variable in class jj2000.j2k.image.Tiler

The horizontal coordinate of the tiling origin in the canvas system, on the reference grid.

xTiles - Variable in class loci.formats.in.DeltavisionReader

Number of tiles in X direction.

xTiles - Variable in class loci.formats.services.JPEGTurboServiceImpl

XToTileX(int, int, int) - Static method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Converts a pixel's X coordinate into a horizontal tile index relative to a given tile grid layout specified by its X offset and tile width.

XToTileX(int) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Converts a pixel's X coordinate into a horizontal tile index.

XToTileX(int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Converts a pixel's X coordinate into a horizontal tile index relative to a given tile grid layout specified by its X offset and tile width.

xtra - Variable in class loci.poi.hssf.record.formula.NamePtg

xtsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

xtsiz - Variable in class jj2000.j2k.image.Tiler

The nominal width of the tiles, on the reference grid.

xyGain - Variable in class loci.formats.in.SDTInfo

Gain for XY ADCs (SPC930).

xyw(CellConstraints, int, int, int) - Method in class loci.plugins.in.MainDialog

Convenience method for creating a left-aligned, vertically centered cell constraints object.

Y

y - Variable in class jj2000.j2k.roi.encoder.ROI

y coordinate of center of circular ROI

y - Variable in class loci.common.Region

y - Variable in class loci.formats.in.BioRadReader.Note

y - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo

y - Variable in class loci.formats.in.InCellReader

y - Variable in class loci.formats.in.LeicaHandler.ROI

y - Variable in class loci.formats.in.LIFReader.ROI

y - Variable in class loci.formats.in.OperettaReader.Plane

y - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

y - Variable in class loci.formats.TileStitcher.TileCoordinate

y - Variable in class loci.poi.hssf.util.PaneInformation

y - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

y - Variable in class ome.xml.model.Ellipse

y - Variable in class ome.xml.model.Label

y - Variable in class ome.xml.model.Mask

y - Variable in class ome.xml.model.Point

y - Variable in class ome.xml.model.Rectangle

y - Variable in class ome.xml.model.StageLabel

y0 - Variable in class loci.formats.tools.AmiraParameters

y0siz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

y0siz - Variable in class jj2000.j2k.image.Tiler

Vertical coordinate of the upper left hand reference grid point.

y1 - Variable in class loci.formats.in.BaseZeissReader.Shape

y1 - Variable in class loci.formats.tools.AmiraParameters

y1 - Variable in class loci.poi.hssf.usermodel.HSSFPatriarch

y1 - Variable in class loci.poi.hssf.usermodel.HSSFShapeGroup

y1 - Variable in class ome.xml.model.Line

y2 - Variable in class loci.formats.in.BaseZeissReader.Shape

y2 - Variable in class loci.poi.hssf.usermodel.HSSFPatriarch

y2 - Variable in class loci.poi.hssf.usermodel.HSSFShapeGroup

y2 - Variable in class ome.xml.model.Line

Y8 - Static variable in class loci.formats.in.AVIReader

Y_BINNING - Static variable in class loci.formats.in.CellSensReader

Y_CB_CR_COEFFICIENTS - Static variable in class loci.formats.tiff.IFD

Y_CB_CR_POSITIONING - Static variable in class loci.formats.tiff.IFD

Y_CB_CR_POSITIONING_CENTERED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "YCbCrPositioning" tag.

Y_CB_CR_POSITIONING_COSITED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "YCbCrPositioning" tag.

Y_CB_CR_SUB_SAMPLING - Static variable in class loci.formats.tiff.IFD

Y_DIMENSION_UNIT - Static variable in class loci.formats.in.CellSensReader

Y_IMG_STRING - Static variable in class loci.formats.in.SDTInfo

Y_KEY - Static variable in class loci.formats.in.LiFlimReader

Y_PLANE_DIMENSION_UNIT - Static variable in class loci.formats.in.CellSensReader

Y_POS_TAG - Static variable in class loci.formats.in.SlidebookTiffReader

Y_POSITION - Static variable in class loci.formats.tiff.IFD

Y_POSITION - Static variable in class loci.tests.testng.Configuration

Y_POSITION_UNIT - Static variable in class loci.tests.testng.Configuration

Y_RESOLUTION - Static variable in class loci.formats.tiff.IFD

Y_STRING - Static variable in class loci.formats.in.SDTInfo

ycal - Variable in class loci.formats.in.OpenlabReader

ycbcr - Variable in class loci.formats.codec.CodecOptions

Whether or not the decompressed data will be stored as YCbCr.

ycbcrCorrection - Variable in class loci.formats.tiff.TiffParser

yCoordinates - Variable in class loci.formats.in.ZeissLSMReader

ycrg - Variable in class jj2000.j2k.codestream.HeaderInfo.CRG

YD - Static variable in class ome.units.UNITS

yDim - Variable in class loci.formats.out.AVIWriter

YEAR - Static variable in class loci.formats.FormatTools

Year in which this release was built.

YHZ - Static variable in class ome.units.UNITS

yIndex - Variable in class loci.formats.in.TextReader

Column index for Y coordinate.

yLen - Variable in class loci.formats.in.LiFlimReader

yLocation - Variable in class loci.formats.in.VolocityReader.Stack

YM - Static variable in class ome.units.UNITS

ymax - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

ymin - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

Yn - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

YOCTO(Unit<T>) - Static method in class ome.units.UNITS

yOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Source to destination transform

yOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The source -> destination transformation

yOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The source -> destination transformation

yOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The subsampling parameters.

yOffset - Variable in class loci.formats.in.NativeND2Reader

yOrigin - Variable in class loci.formats.in.TiffReader

YOTTA(Unit<T>) - Static method in class ome.units.UNITS

YOTTAHZ - Static variable in class ome.units.UNITS

YOTTAM - Static variable in class ome.units.UNITS

YOTTAPA - Static variable in class ome.units.UNITS

YOTTAS - Static variable in class ome.units.UNITS

YOTTAV - Static variable in class ome.units.UNITS

YOTTAW - Static variable in class ome.units.UNITS

YPA - Static variable in class ome.units.UNITS

ypad - Variable in class loci.formats.tools.MakeTestOmeTiff.TextLine

ypixels - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo

yPixelsPerMeter - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

yPoints - Variable in class loci.poi.hssf.usermodel.HSSFPolygon

yPos - Variable in class loci.formats.in.LeicaHandler

yPos - Variable in class loci.formats.in.OpenlabReader

yPositions - Variable in class loci.formats.in.FlexReader

yQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The y position of the last code block before ncb quit reached

yref - Variable in class jj2000.j2k.codestream.PrecCoordInfo

Vertical upper left coordinate on the reference grid

yrsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

YS - Static variable in class ome.units.UNITS

ysiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

ySizes - Variable in class loci.formats.in.FlexReader

yt0siz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

yt0siz - Variable in class jj2000.j2k.image.Tiler

The vertical coordinate of the tiling origin in the canvas system, on the reference grid.

yTiles - Variable in class loci.formats.in.DeltavisionReader

Number of tiles in Y direction.

yTiles - Variable in class loci.formats.services.JPEGTurboServiceImpl

YToTileY(int, int, int) - Static method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Converts a pixel's Y coordinate into a vertical tile index relative to a given tile grid layout specified by its Y offset and tile height.

YToTileY(int) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Converts a pixel's Y coordinate into a vertical tile index.

YToTileY(int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Converts a pixel's Y coordinate into a vertical tile index relative to a given tile grid layout specified by its Y offset and tile height.

ytsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

ytsiz - Variable in class jj2000.j2k.image.Tiler

The nominal height of the tiles, on the reference grid.

YV - Static variable in class ome.units.UNITS

YW - Static variable in class ome.units.UNITS

yy - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

yy - Variable in class loci.formats.codec.JPEGTileDecoder.TileConsumer

Z

Z - Static variable in class loci.formats.AxisGuesser

Prefix endings indicating space dimension.

z - Variable in class loci.formats.in.LeicaSCNReader.Dimension

z - Variable in class loci.formats.in.MicromanagerReader.Index

z - Variable in class loci.formats.in.OperettaReader.Plane

z - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

z - Variable in class ome.xml.model.StageLabel

z0 - Variable in class loci.formats.tools.AmiraParameters

z1 - Variable in class loci.formats.tools.AmiraParameters

Z_AXIS - Static variable in class loci.formats.AxisGuesser

Axis type for focal planes.

Z_INCREMENT - Static variable in class loci.formats.in.CellSensReader

Z_KEY - Static variable in class loci.formats.in.LiFlimReader

Z_NUM - Static variable in class loci.formats.FormatTools

Z_POS_TAG - Static variable in class loci.formats.in.SlidebookTiffReader

Z_POSITION - Static variable in class loci.tests.testng.Configuration

Z_POSITION_UNIT - Static variable in class loci.tests.testng.Configuration

Z_START - Static variable in class loci.formats.in.CellSensReader

Z_VALUE - Static variable in class loci.formats.in.CellSensReader

zap(int) - Method in interface loci.poi.poifs.storage.BlockList

remove the specified block from the list

zap(int) - Method in class loci.poi.poifs.storage.BlockListImpl

remove the specified block from the list

zBegin - Variable in class loci.plugins.in.ImporterOptions

ZC_LUT_BITS - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Number of bits used for the Zero Coding lookup table

ZC_LUT_BITS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Number of bits used for the Zero Coding lookup table

ZC_LUT_HH - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Zero Coding context lookup tables for the HH global orientation

ZC_LUT_HH - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Zero Coding context lookup tables for the HH global orientation

ZC_LUT_HL - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Zero Coding context lookup tables for the HL global orientation

ZC_LUT_HL - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Zero Coding context lookup tables for the HL global orientation

ZC_LUT_LH - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Zero Coding context lookup tables for the LH global orientation

ZC_LUT_LH - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Zero Coding context lookup tables for the LH global orientation

ZC_MASK - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The mask to obtain the ZC_LUT index from the 'state' information

ZC_MASK - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The mask to obtain the ZC_LUT index from the state information

zChoice - Variable in class loci.formats.gui.DataConverter

zChoice - Variable in class loci.plugins.in.SwapDialog

zCoordinates - Variable in class loci.formats.in.ZeissLSMReader

zctLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

zctText - Variable in class loci.formats.gui.PreviewPane

zctTip - Variable in class loci.formats.gui.PreviewPane

zDim - Variable in class loci.formats.out.AVIWriter

zDistances - Variable in class loci.formats.in.MetamorphReader

ZEISS_ID - Static variable in class loci.formats.in.ZeissLSMReader

Tag identifying a Zeiss LSM file.

ZeissCZIReader - Class in loci.formats.in

ZeissCZIReader is the file format reader for Zeiss .czi files.

ZeissCZIReader() - Constructor for class loci.formats.in.ZeissCZIReader

Constructs a new Zeiss .czi reader.

ZeissCZIReader.Attachment - Class in loci.formats.in

Segment with ID "ZISRAWATTACH".

ZeissCZIReader.Attachment(String, long) - Constructor for class loci.formats.in.ZeissCZIReader.Attachment

ZeissCZIReader.AttachmentDirectory - Class in loci.formats.in

Segment with ID "ZISRAWATTDIR".

ZeissCZIReader.AttachmentDirectory() - Constructor for class loci.formats.in.ZeissCZIReader.AttachmentDirectory

ZeissCZIReader.AttachmentEntry - Class in loci.formats.in

ZeissCZIReader.AttachmentEntry(RandomAccessInputStream) - Constructor for class loci.formats.in.ZeissCZIReader.AttachmentEntry

ZeissCZIReader.Channel - Class in loci.formats.in

ZeissCZIReader.Channel() - Constructor for class loci.formats.in.ZeissCZIReader.Channel

ZeissCZIReader.Coordinate - Class in loci.formats.in

ZeissCZIReader.Coordinate(int, int, int) - Constructor for class loci.formats.in.ZeissCZIReader.Coordinate

ZeissCZIReader.DimensionEntry - Class in loci.formats.in

ZeissCZIReader.DimensionEntry(RandomAccessInputStream) - Constructor for class loci.formats.in.ZeissCZIReader.DimensionEntry

ZeissCZIReader.Directory - Class in loci.formats.in

Segment with ID "ZISRAWDIRECTORY".

ZeissCZIReader.Directory() - Constructor for class loci.formats.in.ZeissCZIReader.Directory

ZeissCZIReader.DirectoryEntry - Class in loci.formats.in

ZeissCZIReader.DirectoryEntry(RandomAccessInputStream) - Constructor for class loci.formats.in.ZeissCZIReader.DirectoryEntry

ZeissCZIReader.FileHeader - Class in loci.formats.in

Segment with ID "ZISRAWFILE".

ZeissCZIReader.FileHeader() - Constructor for class loci.formats.in.ZeissCZIReader.FileHeader

ZeissCZIReader.Metadata - Class in loci.formats.in

Segment with ID "ZISRAWMETADATA".

ZeissCZIReader.Metadata() - Constructor for class loci.formats.in.ZeissCZIReader.Metadata

ZeissCZIReader.Segment - Class in loci.formats.in

Top-level class that implements logic common to all types of Segment.

ZeissCZIReader.Segment() - Constructor for class loci.formats.in.ZeissCZIReader.Segment

ZeissCZIReader.Segment(String) - Constructor for class loci.formats.in.ZeissCZIReader.Segment

ZeissCZIReader.Segment(ZeissCZIReader.Segment) - Constructor for class loci.formats.in.ZeissCZIReader.Segment

ZeissCZIReader.SubBlock - Class in loci.formats.in

Segment with ID "ZISRAWSUBBLOCK".

ZeissCZIReader.SubBlock() - Constructor for class loci.formats.in.ZeissCZIReader.SubBlock

ZeissCZIReader.SubBlock(ZeissCZIReader.SubBlock) - Constructor for class loci.formats.in.ZeissCZIReader.SubBlock

ZeissLMSReader - Class in loci.formats.in

Zeiss LMS reader for data from Zeiss CSM 700 systems.

ZeissLMSReader() - Constructor for class loci.formats.in.ZeissLMSReader

Constructs a new LMS reader.

ZeissLSMReader - Class in loci.formats.in

ZeissLSMReader is the file format reader for Zeiss LSM files.

ZeissLSMReader() - Constructor for class loci.formats.in.ZeissLSMReader

Constructs a new Zeiss LSM reader.

ZeissLSMReader.BeamSplitter - Class in loci.formats.in

ZeissLSMReader.BeamSplitter() - Constructor for class loci.formats.in.ZeissLSMReader.BeamSplitter

ZeissLSMReader.DataChannel - Class in loci.formats.in

ZeissLSMReader.DataChannel() - Constructor for class loci.formats.in.ZeissLSMReader.DataChannel

ZeissLSMReader.DetectionChannel - Class in loci.formats.in

ZeissLSMReader.DetectionChannel() - Constructor for class loci.formats.in.ZeissLSMReader.DetectionChannel

ZeissLSMReader.IlluminationChannel - Class in loci.formats.in

ZeissLSMReader.IlluminationChannel() - Constructor for class loci.formats.in.ZeissLSMReader.IlluminationChannel

ZeissLSMReader.Laser - Class in loci.formats.in

ZeissLSMReader.Laser() - Constructor for class loci.formats.in.ZeissLSMReader.Laser

ZeissLSMReader.Marker - Class in loci.formats.in

ZeissLSMReader.Marker() - Constructor for class loci.formats.in.ZeissLSMReader.Marker

ZeissLSMReader.Recording - Class in loci.formats.in

ZeissLSMReader.Recording() - Constructor for class loci.formats.in.ZeissLSMReader.Recording

ZeissLSMReader.SubBlock - Class in loci.formats.in

ZeissLSMReader.SubBlock() - Constructor for class loci.formats.in.ZeissLSMReader.SubBlock

ZeissLSMReader.Timer - Class in loci.formats.in

ZeissLSMReader.Timer() - Constructor for class loci.formats.in.ZeissLSMReader.Timer

ZeissLSMReader.Track - Class in loci.formats.in

ZeissLSMReader.Track() - Constructor for class loci.formats.in.ZeissLSMReader.Track

ZeissTIFFHandler - Class in loci.formats.in

SAX handler for parsing XML in Zeiss TIFF files.

ZeissTIFFHandler(ZeissTIFFReader) - Constructor for class loci.formats.in.ZeissTIFFHandler

ZeissTIFFHandler.Plane - Class in loci.formats.in

Metadata for a single image plane.

ZeissTIFFHandler.Plane(String, ZeissTIFFHandler.TagSet) - Constructor for class loci.formats.in.ZeissTIFFHandler.Plane

Constructor

ZeissTIFFHandler.Scaling - Class in loci.formats.in

Scaling metadata.

ZeissTIFFHandler.Scaling() - Constructor for class loci.formats.in.ZeissTIFFHandler.Scaling

ZeissTIFFHandler.Scaling.Dimension - Class in loci.formats.in

Scaling information for a single dimension.

ZeissTIFFHandler.Scaling.Dimension(Integer) - Constructor for class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

Constructor.

ZeissTIFFHandler.Tag - Class in loci.formats.in

Content of a single tag from a Tags block.

ZeissTIFFHandler.Tag(int) - Constructor for class loci.formats.in.ZeissTIFFHandler.Tag

Constructor.

ZeissTIFFHandler.TagSet - Class in loci.formats.in

A collection of tags from a single Tags block.

ZeissTIFFHandler.TagSet() - Constructor for class loci.formats.in.ZeissTIFFHandler.TagSet

ZeissTIFFReader - Class in loci.formats.in

ZeissTIFFReader is the file format reader for Zeiss AxioVision TIFF files and their companion XML file.

ZeissTIFFReader() - Constructor for class loci.formats.in.ZeissTIFFReader

ZeissTIFFReader.Channel - Class in loci.formats.in

ZeissTIFFReader.Channel(int) - Constructor for class loci.formats.in.ZeissTIFFReader.Channel

ZeissTIFFReader.Plane - Class in loci.formats.in

ZeissTIFFReader.Plane() - Constructor for class loci.formats.in.ZeissTIFFReader.Plane

ZeissTIFFReader.Slice - Class in loci.formats.in

ZeissTIFFReader.Slice(int) - Constructor for class loci.formats.in.ZeissTIFFReader.Slice

ZeissTIFFReader.TIFFInfo - Class in loci.formats.in

ZeissTIFFReader.TIFFInfo() - Constructor for class loci.formats.in.ZeissTIFFReader.TIFFInfo

ZeissTIFFReader.Timepoint - Class in loci.formats.in

ZeissTIFFReader.Timepoint(int) - Constructor for class loci.formats.in.ZeissTIFFReader.Timepoint

ZeissZVIReader - Class in loci.formats.in

ZeissZVIReader is the file format reader for Zeiss ZVI files.

ZeissZVIReader() - Constructor for class loci.formats.in.ZeissZVIReader

Constructs a new ZeissZVI reader.

zEnd - Variable in class loci.plugins.in.ImporterOptions

ZEPTO(Unit<T>) - Static method in class ome.units.UNITS

zeroes - Variable in class loci.formats.FilePatternBlock

The number of leading zeroes.

zeroHeight - Static variable in class loci.poi.hssf.record.RowRecord

ZETTA(Unit<T>) - Static method in class ome.units.UNITS

ZETTAHZ - Static variable in class ome.units.UNITS

ZETTAM - Static variable in class ome.units.UNITS

ZETTAPA - Static variable in class ome.units.UNITS

ZETTAS - Static variable in class ome.units.UNITS

ZETTAV - Static variable in class ome.units.UNITS

ZETTAW - Static variable in class ome.units.UNITS

ZHZ - Static variable in class ome.units.UNITS

zIndices - Variable in class loci.formats.in.BaseZeissReader

zip - Variable in class loci.common.ZipHandle

ZIP - Static variable in class loci.formats.in.PhotoshopTiffReader

ZipHandle - Class in loci.common

StreamHandle implementation for reading from Zip-compressed files or byte arrays.

ZipHandle(String) - Constructor for class loci.common.ZipHandle

ZipHandle(String, ZipEntry) - Constructor for class loci.common.ZipHandle

Constructs a new ZipHandle corresponding to the given entry of the specified Zip file.

ZipReader - Class in loci.formats.in

Reader for Zip files.

ZipReader() - Constructor for class loci.formats.in.ZipReader

ZipTester - Class in loci.tests

A class for testing RandomAccessInputStream's ability to handle files compressed with gz, zip or bz2.

ZipTester() - Constructor for class loci.tests.ZipTester

zLabel - Variable in class loci.formats.gui.DataConverter

zLen - Variable in class loci.formats.in.LiFlimReader

ZlibCodec - Class in loci.formats.codec

This class implements ZLIB decompression.

ZlibCodec() - Constructor for class loci.formats.codec.ZlibCodec

zLocation - Variable in class loci.formats.in.VolocityReader.Stack

ZM - Static variable in class ome.units.UNITS

zMapFile - Variable in class loci.formats.in.CellWorxReader

Zn - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

zOffset - Variable in class loci.formats.in.NativeND2Reader

zoom - Variable in class loci.formats.in.LeicaHandler.Detector

zoom - Variable in class loci.formats.in.LeicaHandler

zoom - Variable in class loci.formats.in.MetamorphHandler

zoom - Variable in class loci.formats.in.MetamorphReader

zoom - Variable in class loci.formats.in.ZeissCZIReader

zoom - Variable in class loci.formats.in.ZeissLSMReader

zoom - Variable in class ome.xml.model.Detector

zoom - Variable in class ome.xml.model.DetectorSettings

zooms - Variable in class loci.formats.in.LIFReader

ZPA - Static variable in class ome.units.UNITS

ZPO_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

zPos - Variable in class loci.formats.in.LeicaHandler

zPos - Variable in class loci.formats.in.OpenlabReader

zPosition - Variable in class loci.formats.in.InCellReader.Image

zPosition - Variable in class loci.formats.in.InCellReader.InCellHandler

zPosition - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

zPositions - Variable in class loci.formats.in.FluoviewReader

zPositions - Variable in class loci.formats.in.MetamorphHandler

zs - Variable in class loci.formats.in.ND2Handler

ZS - Static variable in class ome.units.UNITS

zScroll - Variable in class loci.plugins.util.DataBrowser

zSize - Variable in class loci.formats.in.DeltavisionReader

Size of one z section in the extended header.

zSlider - Variable in class loci.formats.gui.ImageViewer

zStart - Variable in class loci.formats.in.MetamorphReader

zStep - Variable in class loci.plugins.in.ImporterOptions

zSteps - Variable in class loci.formats.in.LIFReader

ZV - Static variable in class ome.units.UNITS

ZVI - Static variable in class loci.common.DateTools

ZVI_EPOCH - Static variable in class loci.common.DateTools

ZVI_MAGIC_BYTES - Static variable in class loci.formats.in.ZeissZVIReader

ZW - Static variable in class ome.units.UNITS

_

_123_prefix - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_adtl_diag - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_adtl_diag_line_style - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_adtl_fill_pattern - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_alignment - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_array - Variable in class loci.poi.util.DoubleList

_array - Variable in class loci.poi.util.IntList

_array - Variable in class loci.poi.util.ShortList

_bat - Variable in class loci.poi.poifs.storage.BlockListImpl

_bat_array_offset - Static variable in interface loci.poi.poifs.storage.HeaderBlockConstants

_bat_count - Variable in class loci.poi.poifs.storage.HeaderBlockReader

_bat_count - Variable in class loci.poi.poifs.storage.HeaderBlockWriter

_bat_count_offset - Static variable in interface loci.poi.poifs.storage.HeaderBlockConstants

_big_block_count - Variable in class loci.poi.poifs.storage.SmallBlockTableWriter

_big_block_minimum_bytes - Static variable in class loci.poi.poifs.property.Property

_big_store - Variable in class loci.poi.poifs.filesystem.POIFSDocument

_black - Variable in class loci.poi.util.BinaryTree.Node

_block_size - Static variable in class loci.poi.poifs.storage.SmallDocumentBlock

_blocks - Variable in class loci.poi.poifs.property.PropertyTable

_blocks - Variable in class loci.poi.poifs.storage.BlockAllocationTableWriter

_blocks - Variable in class loci.poi.poifs.storage.BlockListImpl

_blocks_per_big_block - Variable in class loci.poi.poifs.storage.SmallDocumentBlock

_border_bottom - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_border_left - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_border_right - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_border_top - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_bottom_border_palette_idx - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_bytes_read - Variable in class loci.poi.poifs.storage.DocumentBlock

_calculated_hashcode - Variable in class loci.poi.util.BinaryTree.Node

_child_property - Variable in class loci.poi.poifs.property.Property

_child_property_offset - Static variable in class loci.poi.poifs.property.Property

_children - Variable in class loci.poi.poifs.property.DirectoryProperty

_children_names - Variable in class loci.poi.poifs.property.DirectoryProperty

_closed - Variable in class loci.poi.poifs.filesystem.DocumentInputStream

_creator - Static variable in class loci.poi.util.CommonsLogger

_current_offset - Variable in class loci.poi.poifs.filesystem.DocumentInputStream

_data - Variable in class loci.poi.poifs.storage.BATBlock

_data - Variable in class loci.poi.poifs.storage.HeaderBlockReader

_data - Variable in class loci.poi.poifs.storage.HeaderBlockWriter

_data - Variable in class loci.poi.poifs.storage.SmallDocumentBlock

_data - Variable in class loci.poi.util.BinaryTree.Node

_data_name - Static variable in class loci.poi.util.BinaryTree

_days_1 - Variable in class loci.poi.poifs.property.Property

_days_1_offset - Static variable in class loci.poi.poifs.property.Property

_days_2 - Variable in class loci.poi.poifs.property.Property

_days_2_offset - Static variable in class loci.poi.poifs.property.Property

_default_fill - Static variable in class loci.poi.poifs.property.Property

_default_fill - Static variable in class loci.poi.poifs.storage.SmallDocumentBlock

_default_size - Static variable in class loci.poi.util.DoubleList

_default_size - Static variable in class loci.poi.util.IntList

_default_size - Static variable in class loci.poi.util.IntMapper

_default_size - Static variable in class loci.poi.util.ShortList

_default_value - Static variable in class loci.poi.poifs.storage.BATBlock

_default_value - Static variable in class loci.poi.poifs.storage.DocumentBlock

_default_value - Static variable in class loci.poi.poifs.storage.HeaderBlockWriter

_default_value - Static variable in class loci.poi.util.ByteField

_diag - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_document - Variable in class loci.poi.poifs.filesystem.DocumentInputStream

_document - Variable in class loci.poi.poifs.filesystem.DocumentNode

_document - Variable in class loci.poi.poifs.property.DocumentProperty

_document_size - Variable in class loci.poi.poifs.filesystem.DocumentInputStream

_documents - Variable in class loci.poi.poifs.filesystem.POIFSFileSystem

_entries - Variable in class loci.poi.poifs.filesystem.DirectoryNode

_entries - Variable in class loci.poi.poifs.storage.BlockAllocationTableReader

_entries - Variable in class loci.poi.poifs.storage.BlockAllocationTableWriter

_entries_per_block - Variable in class loci.poi.poifs.storage.BATBlock

_entry_set - Variable in class loci.poi.util.BinaryTree

_eof - Variable in class loci.poi.poifs.storage.RawDataBlock

_EOL - Static variable in class loci.poi.poifs.dev.POIFSViewEngine

_expected_modifications - Variable in class loci.poi.util.BinaryTree.BinaryTreeIterator

_fields - Variable in class loci.poi.poifs.storage.BATBlock

_filesystem - Variable in class loci.poi.poifs.filesystem.DirectoryNode

_fill_background - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_fill_foreground - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_hashcode - Variable in class loci.poi.util.BinaryTree.Node

_hexcodes - Static variable in class loci.poi.util.HexDump

_hidden - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_indent - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_indent_not_parent_alignment - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_indent_not_parent_border - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_indent_not_parent_cell_options - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_indent_not_parent_font - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_indent_not_parent_format - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_indent_not_parent_pattern - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_index - Variable in class loci.poi.poifs.property.Property

_INDEX_COUNT - Static variable in class loci.poi.util.BinaryTree

_INDEX_SUM - Static variable in class loci.poi.util.BinaryTree

_justify_last - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_KEY - Static variable in class loci.poi.util.BinaryTree

_key_set - Variable in class loci.poi.util.BinaryTree

_last_returned_node - Variable in class loci.poi.util.BinaryTree.BinaryTreeIterator

_left - Variable in class loci.poi.util.BinaryTree.Node

_left_border_palette_idx - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_limit - Variable in class loci.poi.util.DoubleList

_limit - Variable in class loci.poi.util.IntList

_limit - Variable in class loci.poi.util.ShortList

_locked - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_loggers - Static variable in class loci.poi.util.POILogFactory

_marked_offset - Variable in class loci.poi.poifs.filesystem.DocumentInputStream

_mask - Variable in class loci.poi.util.BitField

_max_name_length - Static variable in class loci.poi.poifs.property.Property

_mdb_attempt_bind(MdbHandle, MdbColumn, boolean, int, int) - Static method in class mdbtools.libmdb.Data

_mdb_get_int16(byte[], int) - Static method in class mdbtools.libmdb.file

_mdb_get_int32(byte[], int) - Static method in class mdbtools.libmdb.file

_mdb_open(RandomAccess) - Static method in class mdbtools.libmdb.file

_mdb_read_pg(MdbHandle, byte[], long) - Static method in class mdbtools.libmdb.file

_merge_cells - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_MINIMUM_INDEX - Static variable in class loci.poi.util.BinaryTree

_modifications - Variable in class loci.poi.util.BinaryTree

_name - Variable in class loci.poi.poifs.property.Property

_name_size - Variable in class loci.poi.poifs.property.Property

_name_size_offset - Static variable in class loci.poi.poifs.property.Property

_next_child - Variable in class loci.poi.poifs.property.Property

_next_node - Variable in class loci.poi.util.BinaryTree.BinaryTreeIterator

_next_property - Variable in class loci.poi.poifs.property.Property

_next_property_offset - Static variable in class loci.poi.poifs.property.Property

_NO_INDEX - Static variable in class loci.poi.poifs.property.Property

_NODE_BLACK - Static variable in class loci.poi.poifs.property.Property

_node_color - Variable in class loci.poi.poifs.property.Property

_node_color_offset - Static variable in class loci.poi.poifs.property.Property

_NODE_RED - Static variable in class loci.poi.poifs.property.Property

_offset - Variable in class loci.poi.util.ByteField

_offset - Variable in class loci.poi.util.IntegerField

_offset - Variable in class loci.poi.util.LongField

_offset - Variable in class loci.poi.util.ShortField

_parent - Variable in class loci.poi.poifs.filesystem.EntryNode

_parent - Variable in class loci.poi.util.BinaryTree.Node

_parent_index - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_path - Variable in class loci.poi.poifs.filesystem.DirectoryNode

_previous_child - Variable in class loci.poi.poifs.property.Property

_previous_property - Variable in class loci.poi.poifs.property.Property

_previous_property_offset - Static variable in class loci.poi.poifs.property.Property

_properties - Variable in class loci.poi.poifs.property.PropertyTable

_properties - Variable in class loci.poi.poifs.storage.PropertyBlock

_properties_per_block - Variable in class loci.poi.poifs.storage.PropertyBlock

_property - Variable in class loci.poi.poifs.filesystem.EntryNode

_property - Variable in class loci.poi.poifs.filesystem.POIFSDocument

_property_start - Variable in class loci.poi.poifs.storage.HeaderBlockReader

_property_start - Variable in class loci.poi.poifs.storage.HeaderBlockWriter

_property_start_offset - Static variable in interface loci.poi.poifs.storage.HeaderBlockConstants

_property_table - Variable in class loci.poi.poifs.filesystem.POIFSFileSystem

_property_type - Variable in class loci.poi.poifs.property.Property

_raw_data - Variable in class loci.poi.poifs.property.Property

_reading_order - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_right - Variable in class loci.poi.util.BinaryTree.Node

_right_border_palette_idx - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_root - Variable in class loci.poi.poifs.filesystem.POIFSFileSystem

_root - Variable in class loci.poi.poifs.storage.SmallBlockTableWriter

_root - Variable in class loci.poi.util.BinaryTree

_rotation - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_sbat - Variable in class loci.poi.poifs.storage.SmallBlockTableWriter

_sbat_block_count - Variable in class loci.poi.poifs.storage.HeaderBlockWriter

_sbat_block_count_offset - Static variable in interface loci.poi.poifs.storage.HeaderBlockConstants

_sbat_start - Variable in class loci.poi.poifs.storage.HeaderBlockReader

_sbat_start - Variable in class loci.poi.poifs.storage.HeaderBlockWriter

_sbat_start_offset - Static variable in interface loci.poi.poifs.storage.HeaderBlockConstants

_seconds_1 - Variable in class loci.poi.poifs.property.Property

_seconds_1_offset - Static variable in class loci.poi.poifs.property.Property

_seconds_2 - Variable in class loci.poi.poifs.property.Property

_seconds_2_offset - Static variable in class loci.poi.poifs.property.Property

_shift_count - Variable in class loci.poi.util.BitField

_shifts - Static variable in class loci.poi.util.HexDump

_shrink_to_fit - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_signature - Static variable in interface loci.poi.poifs.storage.HeaderBlockConstants

_signature_offset - Static variable in interface loci.poi.poifs.storage.HeaderBlockConstants

_size - Variable in class loci.poi.poifs.filesystem.POIFSDocument

_size - Variable in class loci.poi.poifs.property.Property

_size - Variable in class loci.poi.util.BinaryTree

_size_offset - Static variable in class loci.poi.poifs.property.Property

_small_blocks - Variable in class loci.poi.poifs.storage.SmallBlockTableWriter

_small_store - Variable in class loci.poi.poifs.filesystem.POIFSDocument

_start_block - Variable in class loci.poi.poifs.property.Property

_start_block - Variable in class loci.poi.poifs.property.PropertyTable

_start_block - Variable in class loci.poi.poifs.storage.BlockAllocationTableWriter

_start_block_offset - Static variable in class loci.poi.poifs.property.Property

_storage_clsid - Variable in class loci.poi.poifs.property.Property

_storage_clsid_offset - Static variable in class loci.poi.poifs.property.Property

_tiny_buffer - Variable in class loci.poi.poifs.filesystem.DocumentInputStream

_top_border_palette_idx - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_type - Variable in class loci.poi.util.BinaryTree.BinaryTreeIterator

_user_flags - Variable in class loci.poi.poifs.property.Property

_user_flags_offset - Static variable in class loci.poi.poifs.property.Property

_VALUE - Static variable in class loci.poi.util.BinaryTree

_value - Variable in class loci.poi.util.ByteField

_value - Variable in class loci.poi.util.IntegerField

_value - Variable in class loci.poi.util.LongField

_value - Variable in class loci.poi.util.ShortField

_value_collection - Variable in class loci.poi.util.BinaryTree

_vertical_alignment - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_wrap_text - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

_xbat_chain_offset - Variable in class loci.poi.poifs.storage.BATBlock

_xbat_count - Variable in class loci.poi.poifs.storage.HeaderBlockReader

_xbat_count - Variable in class loci.poi.poifs.storage.HeaderBlockWriter

_xbat_count_offset - Static variable in interface loci.poi.poifs.storage.HeaderBlockConstants

_xbat_start - Variable in class loci.poi.poifs.storage.HeaderBlockReader

_xbat_start - Variable in class loci.poi.poifs.storage.HeaderBlockWriter

_xbat_start_offset - Static variable in interface loci.poi.poifs.storage.HeaderBlockConstants

_xf_type - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _