A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

A

A4_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

A5_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

abort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

AbortableHSSFListener - Class in loci.poi.hssf.eventusermodel

Interface for use with the HSSFRequest and HSSFEventFactory.

AbortableHSSFListener() - Constructor for class loci.poi.hssf.eventusermodel.AbortableHSSFListener

abortableProcessEvents(HSSFRequest, InputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a DocumentInputStream into essentially Record events.

abortableProcessRecord(Record) - Method in class loci.poi.hssf.eventusermodel.AbortableHSSFListener

Process an HSSF Record.

abortableProcessWorkbookEvents(HSSFRequest, POIFSFileSystem) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a file into essentially record events.

About - Class in loci.plugins

Displays a small information dialog about the LOCI Plugins package.

About() - Constructor for class loci.plugins.About

about() - Static method in class loci.plugins.About

About - Class in loci.plugins.ome

Displays a small information dialog about the OME Plugins package.

About() - Constructor for class loci.plugins.ome.About

about() - Static method in class loci.plugins.ome.About

abs() - Method in class loci.plugins.util.RecordedImageProcessor

AbstractEscherHolderRecord - Class in loci.poi.hssf.record

The escher container record is used to hold escher records.

AbstractEscherHolderRecord() - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord

AbstractEscherHolderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord

Constructs a Bar record and sets its fields appropriately.

AbstractFunctionPtg - Class in loci.poi.hssf.record.formula

This class provides the base functionality for Excel sheet functions There are two kinds of function Ptgs - tFunc and tFuncVar Therefore, this class will have ONLY two subclasses

AbstractFunctionPtg() - Constructor for class loci.poi.hssf.record.formula.AbstractFunctionPtg

AbstractLegacyAdapter<L,M> - Class in loci.legacy.adapter

Abstract superclass of all LegacyAdapter implementations.

AbstractLegacyAdapter() - Constructor for class loci.legacy.adapter.AbstractLegacyAdapter

AbstractNIOHandle - Class in loci.common

A legacy delegator to ome.scifio.io.AbstractNIOHandle.

AbstractNIOHandle() - Constructor for class loci.common.AbstractNIOHandle

AbstractNIOHandle - Class in ome.scifio.io

A wrapper for buffered NIO logic that implements the IRandomAccess interface.

AbstractNIOHandle() - Constructor for class ome.scifio.io.AbstractNIOHandle

AbstractOMEModelObject - Class in ome.xml.model

AbstractOMEModelObject() - Constructor for class ome.xml.model.AbstractOMEModelObject

AbstractOMEXMLMetadata - Class in loci.formats.ome

A utility class for constructing and manipulating OME-XML DOMs.

AbstractOMEXMLMetadata() - Constructor for class loci.formats.ome.AbstractOMEXMLMetadata

Creates a new OME-XML metadata object.

AbstractService - Class in loci.common.services

Source code: Trac, Gitweb

AbstractService() - Constructor for class loci.common.services.AbstractService

AbstractShape - Class in loci.poi.hssf.model

An abstract shape is the lowlevel model for a shape.

AbstractShape() - Constructor for class loci.poi.hssf.model.AbstractShape

accept(File) - Method in class loci.formats.gui.ComboFileFilter

Accepts files with the proper filename prefix.

accept(File) - Method in class loci.formats.gui.ExtensionFileFilter

Accepts files with the proper extensions.

accept(File) - Method in class loci.formats.gui.FormatFileFilter

Accepts files in accordance with the file format reader.

accept(File) - Method in class loci.formats.gui.NoExtensionFileFilter

Accepts files with no extension.

accept(String) - Method in class loci.formats.NumberFilter

Tests if a specified file should be included in a file list.

accept(File) - Method in class loci.formats.NumberFilter

Tests if a specified file should be included in a file list.

accumulate - Variable in class loci.formats.in.SDTInfo

AcquisitionMode - Enum in ome.xml.model.enums

AcquisitionModeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for AcquisitionMode.

AcquisitionModeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

actionPerformed(ActionEvent) - Method in class loci.formats.gui.CacheComponent

Handles combo box changes.

actionPerformed(ActionEvent) - Method in class loci.formats.gui.DataConverter

actionPerformed(ActionEvent) - Method in class loci.formats.gui.ImageViewer

Handles menu commands.

actionPerformed(ActionEvent) - Method in class loci.formats.tools.EditTiffG

actionPerformed(ActionEvent) - Method in class loci.plugins.config.ConfigWindow

actionPerformed(ActionEvent) - Method in class loci.plugins.in.SeriesDialog

actionPerformed(ActionEvent) - Method in class loci.plugins.shortcut.ShortcutPanel

Handles button presses.

actionPerformed(ActionEvent) - Method in class loci.plugins.util.DataBrowser

actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow

ACTIVE_PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_PANE_UPER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord

activeSrcHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The height of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.

activeSrcMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The X coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.

activeSrcMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The Y coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.

activeSrcWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The width of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.

AdapterTools - Class in loci.legacy.adapter

A collection of LegacyAdapters for wrapping (and thereby delegating) between Legacy classes and their Modern equivalents.

AdapterTools() - Constructor for class loci.legacy.adapter.AdapterTools

adcDE - Variable in class loci.formats.in.SDTInfo

ADC sample delay (SPC-930).

adcRE - Variable in class loci.formats.in.SDTInfo

adcZoom - Variable in class loci.formats.in.SDTInfo

add(IniTable) - Method in class loci.common.IniList

add(int, IniTable) - Method in class loci.common.IniList

add(byte) - Method in class loci.formats.codec.ByteVector

add(byte[]) - Method in class loci.formats.codec.ByteVector

add(byte[], int, int) - Method in class loci.formats.codec.ByteVector

add(double) - Method in class loci.plugins.util.RecordedImageProcessor

add(int) - Method in class loci.plugins.util.RecordedImageProcessor

add(int, Record) - Method in class loci.poi.hssf.model.WorkbookRecordList

add(int, double) - Method in class loci.poi.util.DoubleList

add the specfied value at the specified index

add(double) - Method in class loci.poi.util.DoubleList

Appends the specified element to the end of this list

add(int, int) - Method in class loci.poi.util.IntList

add the specfied value at the specified index

add(int) - Method in class loci.poi.util.IntList

Appends the specified element to the end of this list

add(Object) - Method in class loci.poi.util.IntMapper

Appends the specified element to the end of this list

add(int, short) - Method in class loci.poi.util.ShortList

add the specfied value at the specified index

add(short) - Method in class loci.poi.util.ShortList

Appends the specified element to the end of this list

add1DBits(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Get code for run and add to compressed bitstream.

add2DBits(byte[], int, int[][], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Place entry from mode table into compressed bitstream.

addAll(Collection<? extends IniTable>) - Method in class loci.common.IniList

addAll(int, Collection<? extends IniTable>) - Method in class loci.common.IniList

addAll(DoubleList) - Method in class loci.poi.util.DoubleList

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.

addAll(int, DoubleList) - Method in class loci.poi.util.DoubleList

Inserts all of the elements in the specified collection into this list at the specified position.

addAll(IntList) - Method in class loci.poi.util.IntList

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.

addAll(int, IntList) - Method in class loci.poi.util.IntList

Inserts all of the elements in the specified collection into this list at the specified position.

addAll(ShortList) - Method in class loci.poi.util.ShortList

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.

addAll(int, ShortList) - Method in class loci.poi.util.ShortList

Inserts all of the elements in the specified collection into this list at the specified position.

addAllowedTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Adds a TIFFTagSet object to the list of allowed tag sets.

addArea(int, short, int, short) - Method in class loci.poi.hssf.record.MergeCellsRecord

Add an area to consider a merged cell.

addBinData(BinData) - Method in class ome.xml.model.Mask

addBinData(BinData) - Method in class ome.xml.model.Pixels

addBooleanAnnotation(BooleanAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addBreak(short, short, short) - Method in class loci.poi.hssf.record.PageBreakRecord

Adds the page break at the specified parameters

addBSERecord(EscherBSERecord) - Method in class loci.poi.hssf.model.Workbook

addByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer

Adds the specified data to the end of the byte array stream.

addCacheListener(CacheListener) - Method in class loci.formats.cache.Cache

addCacheListener(CacheListener) - Method in interface loci.formats.cache.CacheReporter

Adds a listener for status update events.

addCacheListener(CacheListener) - Method in class loci.formats.cache.CacheStrategy

addCellOffset(short) - Method in class loci.poi.hssf.record.DBCellRecord

addChannel(Channel) - Method in class ome.xml.model.Pixels

addChar(char, int) - Method in class loci.poi.hssf.usermodel.FontDetails

addChars(char[], int[]) - Method in class loci.poi.hssf.usermodel.FontDetails

AddCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

addCheckbox(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog

Adds a checkbox to the given dialog object corresponding to the boolean option identified by the specified key.

addChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty

Add a new child to the collection of children

addChild(Property) - Method in interface loci.poi.poifs.property.Parent

Add a new child to the collection of children

addChildRecord(EscherRecord) - Method in class loci.poi.ddf.EscherContainerRecord

addChildRecord(EscherRecord) - Method in class loci.poi.ddf.UnknownEscherRecord

addChoice(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog

Adds a choice to the given dialog object corresponding to the string option identified by the specified key.

addClass(Class<? extends T>) - Method in class loci.formats.ClassList

Adds the given class, which must be assignable to the base class, to the list.

addCluster(int, int) - Method in class loci.poi.ddf.EscherDggRecord

addColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Adds a new color into an empty color slot.

addColumn(Object) - Method in class mdbtools.dbengine.sql.Select

addComment(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

addCommentAnnotation(CommentAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addDataset(Dataset) - Method in class ome.xml.model.OME

addDbcell(int) - Method in class loci.poi.hssf.record.IndexRecord

addDetector(Detector) - Method in class ome.xml.model.Instrument

addDichroic(Dichroic) - Method in class ome.xml.model.Instrument

addDoubleAnnotation(DoubleAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addEntry(Comparable<Object>, DefaultListModel) - Static method in class loci.plugins.config.ConfigWindow

addEOFB(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Add an End-of-Facsimile-Block (EOFB == 0x001001) to the compressed bitstream.

addEOL(boolean, boolean, boolean, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Add an End-of-Line (EOL == 0x001) to the compressed bitstream with optional byte alignment.

addEscherProperty(EscherProperty) - Method in class loci.poi.ddf.EscherOptRecord

Add a property to this record.

addEscherRecord(int, EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

addEscherRecord(EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

addExperiment(Experiment) - Method in class ome.xml.model.OME

addExperimenter(Experimenter) - Method in class ome.xml.model.OME

addExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.OME

addFileAnnotation(FileAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addFilter(Filter) - Method in class ome.xml.model.Instrument

addFilterSet(FilterSet) - Method in class ome.xml.model.Instrument

addFormatRun(UnicodeString.FormatRun) - Method in class loci.poi.hssf.record.UnicodeString

Adds a font run to the formatted string.

addGlobalMeta(String, Object) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, boolean) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, byte) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, short) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, int) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, long) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, float) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, double) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, char) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMetaList(String, Object) - Method in class loci.formats.FormatReader

addGroupBy(FQColumn) - Method in class mdbtools.dbengine.sql.Select

addImage(Image) - Method in class ome.xml.model.OME

addInfoRecord(ExtSSTInfoSubRecord) - Method in class loci.poi.hssf.record.ExtSSTRecord

addInstrument(Instrument) - Method in class ome.xml.model.OME

addLightSource(LightSource) - Method in class ome.xml.model.Instrument

addLightSourceSettings(LightSourceSettings) - Method in class ome.xml.model.MicrobeamManipulation

addListAnnotation(ListAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addListener(HSSFListener, short) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest

add an event listener for a particular record type.

addListenerForAllRecords(HSSFListener) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest

This is the equivilent of calling addListener(myListener, sid) for EVERY record in the loci.poi.hssf.record package.

addLongAnnotation(LongAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addMergedRegion(int, short, int, short) - Method in class loci.poi.hssf.model.Sheet

addMergedRegion(Region) - Method in class loci.poi.hssf.usermodel.HSSFSheet

adds a merged region of cells (hence those cells form one)

addMeta(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader

Adds an entry to the specified Hashtable.

addMetadataOnly(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Insert a MetadataOnly element under the Image specified by 'index' in the given OME-XML metadata object.

addMetadataOnly(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experiment

addModelObject(String, OMEModelObject) - Method in interface ome.xml.model.OMEModel

addModelObject(String, OMEModelObject) - Method in class ome.xml.model.OMEModelImpl

addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Adds ModuloAlong* annotations to the given OME-XML metadata object, using the given CoreMetadata object to determine modulo dimensions.

addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

addName(NameRecord) - Method in class loci.poi.hssf.model.Workbook

creates new name

addNode(Box) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

addNTP(int, int) - Method in class jj2000.j2k.codestream.reader.CBlkInfo

Adds the number of new truncation for specified layer.

addObjective(Objective) - Method in class ome.xml.model.Instrument

addOptPoint(float, int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Adds a new optimization point, with target bitrate 'brate' and with 'elyrs' (unoptimized) extra layers after it.

addOrderBy(OrderBy) - Method in class mdbtools.dbengine.sql.Select

addPicture(byte[], int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Adds a picture to the workbook.

addPlane(Plane) - Method in class ome.xml.model.Pixels

addPlate(Plate) - Method in class ome.xml.model.OME

addPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Plate

addPossible(String) - Method in class loci.plugins.prefs.StringOption

Adds a possible value to the list.

addProject(Project) - Method in class ome.xml.model.OME

addProperty(Property) - Method in class loci.poi.poifs.property.PropertyTable

Add a property to the list of properties we manage

AddPtg - Class in loci.poi.hssf.record.formula

Addition operator PTG the "+" binomial operator.

AddPtg() - Constructor for class loci.poi.hssf.record.formula.AddPtg

Creates new AddPtg

AddPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AddPtg

addReagent(Reagent) - Method in class ome.xml.model.Screen

addReference(OMEModelObject, Reference) - Method in interface ome.xml.model.OMEModel

addReference(OMEModelObject, Reference) - Method in class ome.xml.model.OMEModelImpl

addREFRecord(ExternSheetSubRecord) - Method in class loci.poi.hssf.record.ExternSheetRecord

adds REF struct (ExternSheetSubRecord)

addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

addROI(ROI) - Method in class ome.xml.model.OME

addRow(RowRecord) - Method in class loci.poi.hssf.model.Sheet

Adds a row record to the sheet

addRow(Object[]) - Method in class mdbtools.dbengine.MemoryData

Add a row of data

addScreen(Screen) - Method in class ome.xml.model.OME

addScrollBars(Container) - Static method in class loci.plugins.util.WindowTools

Adds AWT scroll bars to the given container.

addSection(Section) - Method in class loci.poi.hpsf.MutablePropertySet

Adds a section to this property set.

addSection(Section) - Method in class loci.poi.hpsf.SpecialPropertySet

addSeriesMeta(String, Object) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, boolean) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, byte) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, short) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, int) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, long) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, float) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, double) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, char) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMetaList(String, Object) - Method in class loci.formats.FormatReader

addShape(Shape) - Method in class ome.xml.model.Union

addSheetReference(String, int) - Method in class loci.poi.hssf.util.SheetReferences

addShortOrLongField(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

addSSTString(UnicodeString) - Method in class loci.poi.hssf.model.Workbook

Adds a string to the SST table and returns its index (if its a duplicate just returns its index and update the counts) ASSUMES compressed unicode (meaning 8bit)

addSSTString(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

Do not call this method from your applications. Use the methods available in the HSSFRow to add string HSSFCells

addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.AbstractShape

Add standard properties to the opt record.

addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.CommentShape

Sets standard escher options for a comment.

addStatusListener(StatusListener) - Method in class loci.common.adapter.StatusReporterAdapter.LegacyWrapper

addStatusListener(StatusListener) - Method in class loci.common.adapter.StatusReporterAdapter.ModernWrapper

addStatusListener(StatusListener) - Method in interface loci.common.StatusReporter

addStatusListener(StatusListener) - Method in class loci.plugins.in.ImagePlusReader

addStatusListener(StatusListener) - Method in class loci.plugins.in.ImportProcess

addStatusListener(StatusListener) - Method in interface ome.scifio.common.StatusReporter

addString(UnicodeString) - Method in class loci.poi.hssf.record.SSTRecord

Add a string.

addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Add a new string to the string table.

addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Add a new string to the string table.

addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Add a new string to the string table.

addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Add a new string to the string table.

addSubRecord(int, Object) - Method in class loci.poi.hssf.record.ObjRecord

addSubRecord(Object) - Method in class loci.poi.hssf.record.ObjRecord

addTable(Object) - Method in class mdbtools.dbengine.sql.Select

addTagAnnotation(TagAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Adds an element to the group of TIFFTagSets of which this directory is aware.

addTermAnnotation(TermAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addTiffData(TiffData) - Method in class ome.xml.model.Pixels

addTIFFField(TIFFField) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Adds a TIFF field to the directory.

addTimestampAnnotation(TimestampAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addValueName(int, String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Adds a mnemonic name for a particular value that this tag's data may take on.

addValueRecord(int, CellValueRecordInterface) - Method in class loci.poi.hssf.model.Sheet

Adds a value record to the sheet's contained binary records (i.e.

addWell(Well) - Method in class ome.xml.model.Plate

addWellSample(WellSample) - Method in class ome.xml.model.Well

addXMLAnnotation(XMLAnnotation) - Method in class ome.xml.model.StructuredAnnotations

adjustmentValueChanged(AdjustmentEvent) - Method in class loci.plugins.util.DataBrowser

AffineTransform - Class in ome.xml.model

AffineTransform() - Constructor for class ome.xml.model.AffineTransform

Default constructor.

AffineTransform(Element, OMEModel) - Constructor for class ome.xml.model.AffineTransform

Constructs AffineTransform recursively from an XML DOM tree.

AffineTransform(AffineTransform) - Constructor for class ome.xml.model.AffineTransform

Copy constructor.

AFIReader - Class in loci.formats.in

AFIReader is the file format reader for Aperio AFI files.

AFIReader() - Constructor for class loci.formats.in.AFIReader

Constructs a new AFI reader.

afterRecordSerialize(int, short, int, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener

Fired after a record has been serialized.

afterRecordSerialize(int, short, int, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener

Aggregate - Interface in mdbtools.dbengine.functions

aggregateDrawingRecords(DrawingManager2) - Method in class loci.poi.hssf.model.Sheet

AggregateMetadata - Class in loci.formats.meta

A metadata store which delegates the actual storage to one or more sub metadata stores.

AggregateMetadata(List<BaseMetadata>) - Constructor for class loci.formats.meta.AggregateMetadata

Creates a new instance.

AggregateQuery - Class in mdbtools.dbengine.tasks

resolve the columns, num rows not the same

AggregateQuery(Task, Select, int[]) - Constructor for class mdbtools.dbengine.tasks.AggregateQuery

AIMReader - Class in loci.formats.in

AIMReader is the file format reader for .aim files.

AIMReader() - Constructor for class loci.formats.in.AIMReader

Constructs a new AIM reader.

AL3D_MAGIC_STRING - Static variable in class loci.formats.in.AliconaReader

AliconaReader - Class in loci.formats.in

AliconaReader is the file format reader for Alicona AL3D files.

AliconaReader() - Constructor for class loci.formats.in.AliconaReader

Constructs a new Alicona reader.

ALIGN_CENTER - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

center horizontal alignment

ALIGN_CENTER_SELECTION - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

center-selection? horizontal alignment

ALIGN_FILL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

fill? horizontal alignment

ALIGN_GENERAL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

general (normal) horizontal alignment

ALIGN_JUSTIFY - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

justified horizontal alignment

ALIGN_LEFT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

left-justified horizontal alignment

ALIGN_RIGHT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

right-justified horizontal alignment

ALL_DOMAINS - Static variable in class loci.formats.FormatTools

List of all supported domains.

allBlockLengths - Variable in class loci.formats.in.SDTInfo

allBlockOffsets - Variable in class loci.formats.in.SDTInfo

allocate(int...) - Static method in class loci.common.DataTools

Allocates a 1-dimensional byte array matching the product of the given sizes.

allocate(long, int) - Method in class loci.common.NIOByteBufferProvider

Allocates or maps the desired file data into memory.

allocate(int...) - Static method in class ome.scifio.common.DataTools

Allocates a 1-dimensional byte array matching the product of the given sizes.

allocate(long, int) - Method in class ome.scifio.io.NIOByteBufferProvider

Allocates or maps the desired file data into memory.

allocateDirect(long, int) - Method in class loci.common.NIOByteBufferProvider

Allocates memory and copies the desired file data into it.

allocateDirect(long, int) - Method in class ome.scifio.io.NIOByteBufferProvider

Allocates memory and copies the desired file data into it.

allocateMappedByteBuffer(long, int) - Method in class loci.common.NIOByteBufferProvider

Memory maps the desired file data into memory.

allocateMappedByteBuffer(long, int) - Method in class ome.scifio.io.NIOByteBufferProvider

Memory maps the desired file data into memory.

allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager

Allocates new shape id for the new drawing group id.

allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager2

Allocates new shape id for the new drawing group id.

allocateSpace(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Allocate space for a block of indices

allowShow - Variable in class loci.plugins.util.DataBrowser

ALPHA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the first lifting step coefficient

ALPHA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the first lifting step coefficient

alphabeticIndexCount(String) - Static method in class loci.formats.ResourceNamer

alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

alreadyChecked() - Method in class loci.formats.UpgradeChecker

Return true if an upgrade check has already been performed in this JVM session.

ALT_BARS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

ALT_BARS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Wide dots

alt_pg_buf - Variable in class mdbtools.libmdb.MdbHandle

ALT_ZVI - Static variable in class loci.common.DateTools

ALT_ZVI - Static variable in class ome.scifio.common.DateTools

ALT_ZVI_EPOCH - Static variable in class loci.common.DateTools

ALT_ZVI_EPOCH - Static variable in class ome.scifio.common.DateTools

ALTITUDE_REF_SEA_LEVEL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSAltitudeRef" tag.

ALTITUDE_REF_SEA_LEVEL_REFERENCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSAltitudeRef" tag.

AmiraParameters - Class in loci.formats.tools

AmiraParameters handles parsing and writing of AmiraMesh headers.

AmiraParameters(String) - Constructor for class loci.formats.tools.AmiraParameters

AmiraParameters(RandomAccessInputStream) - Constructor for class loci.formats.tools.AmiraParameters

AmiraReader - Class in loci.formats.in

This is a file format reader for AmiraMesh data.

AmiraReader() - Constructor for class loci.formats.in.AmiraReader

analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.

analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

A specific version of the analyze_hpf() method that works on int data.

analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

The general version of the analyze_hpf() method, it just calls the specialized version.

analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

An implementation of the analyze_hpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.

analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

A specific version of the analyze_hpf() method that works on int data.

analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

The general version of the analyze_hpf() method, it just calls the specialized version.

analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

An implementation of the analyze_hpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.

analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.

analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

A specific version of the analyze_lpf() method that works on int data.

analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

The general version of the analyze_lpf() method, it just calls the specialized version.

analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

An implementation of the analyze_lpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.

analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

A specific version of the analyze_lpf() method that works on int data.

analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

The general version of the analyze_lpf() method, it just calls the specialized version.

analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

An implementation of the analyze_lpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.

AnalyzeReader - Class in loci.formats.in

AnalyzeReader is the file format reader for Analyze 7.5 files.

AnalyzeReader() - Constructor for class loci.formats.in.AnalyzeReader

Constructs a new Analyze reader.

anbytes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Actual number of read bytes

ANCHOR_ID_CHART_TITLE - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_SERIES_OR_POINT - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_X_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_Y_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_Z_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

and(int) - Method in class loci.plugins.util.RecordedImageProcessor

AND - Static variable in class mdbtools.dbengine.sql.Condition

anGainExp - Variable in class jj2000.j2k.wavelet.Subband

The base 2 exponent of the analysis gain of the subband.

anim - Variable in class loci.formats.gui.ImageViewer

anim - Variable in class loci.plugins.util.DataBrowser

animate - Variable in class loci.plugins.util.DataBrowser

ANIMATION_KEY - Static variable in class loci.formats.gui.ImageViewer

Annotation - Class in ome.xml.model

Annotation() - Constructor for class ome.xml.model.Annotation

Default constructor.

Annotation(Element, OMEModel) - Constructor for class ome.xml.model.Annotation

Constructs Annotation recursively from an XML DOM tree.

Annotation(Annotation) - Constructor for class ome.xml.model.Annotation

Copy constructor.

AnnotationRef - Class in ome.xml.model

AnnotationRef() - Constructor for class ome.xml.model.AnnotationRef

Default constructor.

AnnotationRef(Element, OMEModel) - Constructor for class ome.xml.model.AnnotationRef

Constructs AnnotationRef recursively from an XML DOM tree.

AnnotationRef(AnnotationRef) - Constructor for class ome.xml.model.AnnotationRef

Copy constructor.

ANO_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

ANSI_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont

ANSI character set

AnWTFilter - Class in jj2000.j2k.wavelet.analysis

This abstract class defines the methods of all analysis wavelet filters.

AnWTFilter() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilter

AnWTFilterFloat - Class in jj2000.j2k.wavelet.analysis

This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for float data specifically.

AnWTFilterFloat() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

AnWTFilterFloatLift9x7 - Class in jj2000.j2k.wavelet.analysis

This class inherits from the analysis wavelet filter definition for int data.

AnWTFilterFloatLift9x7() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

AnWTFilterInt - Class in jj2000.j2k.wavelet.analysis

This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for int data specifically.

AnWTFilterInt() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterInt

AnWTFilterIntLift5x3 - Class in jj2000.j2k.wavelet.analysis

This class inherits from the analysis wavelet filter definition for int data.

AnWTFilterIntLift5x3() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

AnWTFilterSpec - Class in jj2000.j2k.wavelet.analysis

This class extends ModuleSpec class for analysis filters specification holding purpose.

AnWTFilterSpec(int, int, byte, QuantTypeSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Constructs a new 'AnWTFilterSpec' for the specified number of components and tiles.

APERIO_IMAGE_DESCRIPTION_PREFIX - Static variable in class loci.formats.in.SVSReader

TIFF image description prefix for Aperio SVS files.

APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD

APLReader - Class in loci.formats.in

APLReader is the file format reader for Olympus APL files.

APLReader() - Constructor for class loci.formats.in.APLReader

Constructs a new APL reader.

APNGReader - Class in loci.formats.in

APNGReader is the file format reader for Animated Portable Network Graphics (APNG) images.

APNGReader() - Constructor for class loci.formats.in.APNGReader

Constructs a new APNGReader.

APNGWriter - Class in loci.formats.out

APNGWriter is the file format writer for PNG and APNG files.

APNGWriter() - Constructor for class loci.formats.out.APNGWriter

append(ILoggingEvent) - Method in class loci.plugins.util.IJStatusEchoer

appendChild(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

appendServerMap(String, String) - Static method in class loci.formats.in.FlexReader

Add the path 'realName' to the mapping for the server named 'alias'.

applicationData - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

applicationIDs - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

applyCalibration(ImagePlus) - Method in class loci.plugins.in.Calibrator

Applies spatial calibrations to an image stack.

applyColors(List<ImagePlus>) - Method in class loci.plugins.in.Colorizer

applyFont(int, int, short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Applies a font to the specified characters of a string.

applyFont(int, int, HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Applies a font to the specified characters of a string.

applyFont(HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Sets the font of the entire string.

applyFont(short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Applies the specified font to the entire string.

applyMethodStack(List<RecordedImageProcessor.MethodEntry>) - Method in class loci.plugins.util.RecordedImageProcessor

applyTable(int[]) - Method in class loci.plugins.util.RecordedImageProcessor

arate - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Actual decoding rate in bpp

ArbROIMaskGenerator - Class in jj2000.j2k.roi.encoder

This class generates the ROI bit-mask when, at least, one ROI is not rectangular.

ArbROIMaskGenerator(ROI[], int, Quantizer) - Constructor for class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

The constructor of the arbitrary mask generator

arbShape - Variable in class jj2000.j2k.roi.encoder.ROI

Where or not the ROI shape is arbitrary

Arc - Class in ome.xml.model

Arc() - Constructor for class ome.xml.model.Arc

Default constructor.

Arc(Element, OMEModel) - Constructor for class ome.xml.model.Arc

Constructs Arc recursively from an XML DOM tree.

Arc(Arc) - Constructor for class ome.xml.model.Arc

Copy constructor.

ARCHIVE - Static variable in class loci.formats.in.FlexReader

ArcType - Enum in ome.xml.model.enums

ArcTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ArcType.

ArcTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ArcTypeEnumHandler

Area3DPtg - Class in loci.poi.hssf.record.formula

Title: Area 3D Ptg - 3D referecnce (Sheet + Area)

Area3DPtg() - Constructor for class loci.poi.hssf.record.formula.Area3DPtg

Creates new AreaPtg

Area3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg

Area3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg

AreaAPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaAPtg

AreaAPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg

AreaAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg

AreaErrPtg - Class in loci.poi.hssf.record.formula

AreaErr - handles deleted cell area references.

AreaErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg

AreaFormatRecord - Class in loci.poi.hssf.record

The area format record is used to define the colours and patterns for an area.

AreaFormatRecord() - Constructor for class loci.poi.hssf.record.AreaFormatRecord

AreaFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaFormatRecord

Constructs a AreaFormat record and sets its fields appropriately.

AreaNAPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaNAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg

AreaNAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg

AreaNPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaNPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNPtg

AreaNPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNPtg

AreaNVPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaNVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg

AreaNVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg

AreaPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaPtg() - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaPtg(String) - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaRecord - Class in loci.poi.hssf.record

The area record is used to define a area chart.

AreaRecord() - Constructor for class loci.poi.hssf.record.AreaRecord

AreaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaRecord

Constructs a Area record and sets its fields appropriately.

AreaReference - Class in loci.poi.hssf.util

AreaReference(String) - Constructor for class loci.poi.hssf.util.AreaReference

Create an area ref from a string representation

AreaVPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaVPtg

AreaVPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg

AreaVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg

ARFReader - Class in loci.formats.in

ARFReader is the file format reader for Axon Raw Format (ARF) files, produced by INDEC BioSystems's Imaging Workbench software.

ARFReader() - Constructor for class loci.formats.in.ARFReader

Constructs a new ARF reader.

arg - Variable in class loci.plugins.LociExporter

Argument passed to setup method.

args - Static variable in class loci.plugins.shortcut.ShortcutPanel

Details for installed LOCI plugins.

arraycopy(byte[], int, byte[], int, int) - Static method in class loci.poi.util.ArrayUtil

This is really a debugging version of System.arraycopy().

arrayMoveWithin(Object[], int, int, int) - Static method in class loci.poi.util.ArrayUtil

Moves a number of entries in an array to another point in the array, shifting those inbetween as required.

ArrayPtg - Class in loci.poi.hssf.record.formula

ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.

ArrayPtg() - Constructor for class loci.poi.hssf.record.formula.ArrayPtg

ArrayPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtg

ArrayPtgA - Class in loci.poi.hssf.record.formula

ArrayPtgA - handles arrays

ArrayPtgA() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA

ArrayPtgA(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA

ArrayPtgV - Class in loci.poi.hssf.record.formula

ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.

ArrayPtgV() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV

ArrayPtgV(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV

ArrayUtil - Class in jj2000.j2k.util

This class contains a colleaction of utility static methods for arrays.

ArrayUtil() - Constructor for class jj2000.j2k.util.ArrayUtil

ArrayUtil - Class in loci.poi.util

Utility classes for dealing with arrays.

ArrayUtil() - Constructor for class loci.poi.util.ArrayUtil

ARTIST - Static variable in class loci.formats.tiff.IFD

ascii - Variable in class loci.formats.tools.AmiraParameters

AsciiImage - Class in loci.formats.tools

A utility class for outputting a BufferedImage as ASCII text.

AsciiImage(BufferedImage) - Constructor for class loci.formats.tools.AsciiImage

asDateTime(DateTimeZone) - Method in class ome.xml.model.primitives.Timestamp

Returns the timestamp as a Joda DateTime type.

asInstant() - Method in class ome.xml.model.primitives.Timestamp

Returns the timestamp as a Joda DateTime type.

asRetrieve(MetadataStore) - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.asRetrieve(MetadataStore) instead.

asRetrieve(MetadataStore) - Method in interface loci.formats.services.OMEXMLService

Gets the given MetadataStore object as a MetadataRetrieve.

asRetrieve(MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl

assertId(String, boolean, int) - Static method in class loci.formats.FormatTools

Asserts that the current file is either null, or not, according to the given flag.

assoicateShapeToObjRecord(EscherRecord, Record) - Method in class loci.poi.hssf.record.EscherAggregate

Associates an escher record to an OBJ record or a TXO record.

asStore(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Gets the given MetadataRetrieve object as a MetadataStore.

asStore(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl

ASTRONOMY_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the astronomy domain.

asXMLElement(Document) - Method in class ome.xml.model.AbstractOMEModelObject

asXMLElement(Document, Element) - Method in class ome.xml.model.AbstractOMEModelObject

Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.

asXMLElement(Document) - Method in class ome.xml.model.AffineTransform

asXMLElement(Document, Element) - Method in class ome.xml.model.AffineTransform

asXMLElement(Document) - Method in class ome.xml.model.Annotation

asXMLElement(Document, Element) - Method in class ome.xml.model.Annotation

asXMLElement(Document) - Method in class ome.xml.model.AnnotationRef

asXMLElement(Document, Element) - Method in class ome.xml.model.AnnotationRef

asXMLElement(Document) - Method in class ome.xml.model.Arc

asXMLElement(Document, Element) - Method in class ome.xml.model.Arc

asXMLElement(Document) - Method in class ome.xml.model.BasicAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.BasicAnnotation

asXMLElement(Document) - Method in class ome.xml.model.BinaryFile

asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryFile

asXMLElement(Document) - Method in class ome.xml.model.BinaryOnly

asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryOnly

asXMLElement(Document) - Method in class ome.xml.model.BinData

asXMLElement(Document, Element) - Method in class ome.xml.model.BinData

asXMLElement(Document) - Method in class ome.xml.model.BooleanAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.BooleanAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Channel

asXMLElement(Document, Element) - Method in class ome.xml.model.Channel

asXMLElement(Document) - Method in class ome.xml.model.ChannelRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ChannelRef

asXMLElement(Document) - Method in class ome.xml.model.CommentAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.CommentAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Dataset

asXMLElement(Document, Element) - Method in class ome.xml.model.Dataset

asXMLElement(Document) - Method in class ome.xml.model.DatasetRef

asXMLElement(Document, Element) - Method in class ome.xml.model.DatasetRef

asXMLElement(Document) - Method in class ome.xml.model.Detector

asXMLElement(Document, Element) - Method in class ome.xml.model.Detector

asXMLElement(Document) - Method in class ome.xml.model.DetectorSettings

asXMLElement(Document, Element) - Method in class ome.xml.model.DetectorSettings

asXMLElement(Document) - Method in class ome.xml.model.Dichroic

asXMLElement(Document, Element) - Method in class ome.xml.model.Dichroic

asXMLElement(Document) - Method in class ome.xml.model.DichroicRef

asXMLElement(Document, Element) - Method in class ome.xml.model.DichroicRef

asXMLElement(Document) - Method in class ome.xml.model.DoubleAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.DoubleAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Ellipse

asXMLElement(Document, Element) - Method in class ome.xml.model.Ellipse

asXMLElement(Document) - Method in class ome.xml.model.EmissionFilterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.EmissionFilterRef

asXMLElement(Document) - Method in class ome.xml.model.ExcitationFilterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExcitationFilterRef

asXMLElement(Document) - Method in class ome.xml.model.Experiment

asXMLElement(Document, Element) - Method in class ome.xml.model.Experiment

asXMLElement(Document) - Method in class ome.xml.model.Experimenter

asXMLElement(Document, Element) - Method in class ome.xml.model.Experimenter

asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroup

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroup

asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroupRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroupRef

asXMLElement(Document) - Method in class ome.xml.model.ExperimenterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterRef

asXMLElement(Document) - Method in class ome.xml.model.ExperimentRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimentRef

asXMLElement(Document) - Method in class ome.xml.model.External

asXMLElement(Document, Element) - Method in class ome.xml.model.External

asXMLElement(Document) - Method in class ome.xml.model.Filament

asXMLElement(Document, Element) - Method in class ome.xml.model.Filament

asXMLElement(Document) - Method in class ome.xml.model.FileAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.FileAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Filter

asXMLElement(Document, Element) - Method in class ome.xml.model.Filter

asXMLElement(Document) - Method in class ome.xml.model.FilterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.FilterRef

asXMLElement(Document) - Method in class ome.xml.model.FilterSet

asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSet

asXMLElement(Document) - Method in class ome.xml.model.FilterSetRef

asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSetRef

asXMLElement(Document) - Method in class ome.xml.model.Image

asXMLElement(Document, Element) - Method in class ome.xml.model.Image

asXMLElement(Document) - Method in class ome.xml.model.ImageRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ImageRef

asXMLElement(Document) - Method in class ome.xml.model.ImagingEnvironment

asXMLElement(Document, Element) - Method in class ome.xml.model.ImagingEnvironment

asXMLElement(Document) - Method in class ome.xml.model.Instrument

asXMLElement(Document, Element) - Method in class ome.xml.model.Instrument

asXMLElement(Document) - Method in class ome.xml.model.InstrumentRef

asXMLElement(Document, Element) - Method in class ome.xml.model.InstrumentRef

asXMLElement(Document) - Method in class ome.xml.model.Label

asXMLElement(Document, Element) - Method in class ome.xml.model.Label

asXMLElement(Document) - Method in class ome.xml.model.Laser

asXMLElement(Document, Element) - Method in class ome.xml.model.Laser

asXMLElement(Document) - Method in class ome.xml.model.Leader

asXMLElement(Document, Element) - Method in class ome.xml.model.Leader

asXMLElement(Document) - Method in class ome.xml.model.LightEmittingDiode

asXMLElement(Document, Element) - Method in class ome.xml.model.LightEmittingDiode

asXMLElement(Document) - Method in class ome.xml.model.LightPath

asXMLElement(Document, Element) - Method in class ome.xml.model.LightPath

asXMLElement(Document, Element) - Method in class ome.xml.model.LightSource

asXMLElement(Document) - Method in class ome.xml.model.LightSourceSettings

asXMLElement(Document, Element) - Method in class ome.xml.model.LightSourceSettings

asXMLElement(Document) - Method in class ome.xml.model.Line

asXMLElement(Document, Element) - Method in class ome.xml.model.Line

asXMLElement(Document) - Method in class ome.xml.model.ListAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.ListAnnotation

asXMLElement(Document) - Method in class ome.xml.model.LongAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.LongAnnotation

asXMLElement(Document) - Method in class ome.xml.model.ManufacturerSpec

asXMLElement(Document, Element) - Method in class ome.xml.model.ManufacturerSpec

asXMLElement(Document) - Method in class ome.xml.model.Mask

asXMLElement(Document, Element) - Method in class ome.xml.model.Mask

asXMLElement(Document) - Method in class ome.xml.model.MetadataOnly

asXMLElement(Document, Element) - Method in class ome.xml.model.MetadataOnly

asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulation

asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulation

asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulationRef

asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulationRef

asXMLElement(Document) - Method in class ome.xml.model.Microscope

asXMLElement(Document, Element) - Method in class ome.xml.model.Microscope

asXMLElement(Document) - Method in class ome.xml.model.NumericAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.NumericAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Objective

asXMLElement(Document, Element) - Method in class ome.xml.model.Objective

asXMLElement(Document) - Method in class ome.xml.model.ObjectiveSettings

asXMLElement(Document, Element) - Method in class ome.xml.model.ObjectiveSettings

asXMLElement(Document) - Method in class ome.xml.model.OME

asXMLElement(Document, Element) - Method in class ome.xml.model.OME

asXMLElement(Document) - Method in interface ome.xml.model.OMEModelObject

Takes the entire object hierarchy and produces an XML DOM tree.

asXMLElement(Document) - Method in class ome.xml.model.Pixels

asXMLElement(Document, Element) - Method in class ome.xml.model.Pixels

asXMLElement(Document) - Method in class ome.xml.model.Plane

asXMLElement(Document, Element) - Method in class ome.xml.model.Plane

asXMLElement(Document) - Method in class ome.xml.model.Plate

asXMLElement(Document, Element) - Method in class ome.xml.model.Plate

asXMLElement(Document) - Method in class ome.xml.model.PlateAcquisition

asXMLElement(Document, Element) - Method in class ome.xml.model.PlateAcquisition

asXMLElement(Document) - Method in class ome.xml.model.PlateRef

asXMLElement(Document, Element) - Method in class ome.xml.model.PlateRef

asXMLElement(Document) - Method in class ome.xml.model.Point

asXMLElement(Document, Element) - Method in class ome.xml.model.Point

asXMLElement(Document) - Method in class ome.xml.model.Polygon

asXMLElement(Document, Element) - Method in class ome.xml.model.Polygon

asXMLElement(Document) - Method in class ome.xml.model.Polyline

asXMLElement(Document, Element) - Method in class ome.xml.model.Polyline

asXMLElement(Document) - Method in class ome.xml.model.Project

asXMLElement(Document, Element) - Method in class ome.xml.model.Project

asXMLElement(Document) - Method in class ome.xml.model.ProjectRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ProjectRef

asXMLElement(Document) - Method in class ome.xml.model.Pump

asXMLElement(Document, Element) - Method in class ome.xml.model.Pump

asXMLElement(Document) - Method in class ome.xml.model.Reagent

asXMLElement(Document, Element) - Method in class ome.xml.model.Reagent

asXMLElement(Document) - Method in class ome.xml.model.ReagentRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ReagentRef

asXMLElement(Document) - Method in class ome.xml.model.Rectangle

asXMLElement(Document, Element) - Method in class ome.xml.model.Rectangle

asXMLElement(Document) - Method in class ome.xml.model.Reference

asXMLElement(Document, Element) - Method in class ome.xml.model.Reference

asXMLElement(Document) - Method in class ome.xml.model.Rights

asXMLElement(Document, Element) - Method in class ome.xml.model.Rights

asXMLElement(Document) - Method in class ome.xml.model.ROI

asXMLElement(Document, Element) - Method in class ome.xml.model.ROI

asXMLElement(Document) - Method in class ome.xml.model.ROIRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ROIRef

asXMLElement(Document) - Method in class ome.xml.model.Screen

asXMLElement(Document, Element) - Method in class ome.xml.model.Screen

asXMLElement(Document) - Method in class ome.xml.model.Settings

asXMLElement(Document, Element) - Method in class ome.xml.model.Settings

asXMLElement(Document, Element) - Method in class ome.xml.model.Shape

asXMLElement(Document) - Method in class ome.xml.model.StageLabel

asXMLElement(Document, Element) - Method in class ome.xml.model.StageLabel

asXMLElement(Document) - Method in class ome.xml.model.StructuredAnnotations

asXMLElement(Document, Element) - Method in class ome.xml.model.StructuredAnnotations

asXMLElement(Document) - Method in class ome.xml.model.TagAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TagAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TermAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TermAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TextAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TextAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TiffData

asXMLElement(Document, Element) - Method in class ome.xml.model.TiffData

asXMLElement(Document) - Method in class ome.xml.model.TimestampAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TimestampAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TransmittanceRange

asXMLElement(Document, Element) - Method in class ome.xml.model.TransmittanceRange

asXMLElement(Document) - Method in class ome.xml.model.TypeAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TypeAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Union

asXMLElement(Document, Element) - Method in class ome.xml.model.Union

asXMLElement(Document) - Method in class ome.xml.model.UUID

asXMLElement(Document, Element) - Method in class ome.xml.model.UUID

asXMLElement(Document) - Method in class ome.xml.model.Well

asXMLElement(Document, Element) - Method in class ome.xml.model.Well

asXMLElement(Document) - Method in class ome.xml.model.WellSample

asXMLElement(Document, Element) - Method in class ome.xml.model.WellSample

asXMLElement(Document) - Method in class ome.xml.model.WellSampleRef

asXMLElement(Document, Element) - Method in class ome.xml.model.WellSampleRef

asXMLElement(Document) - Method in class ome.xml.model.XMLAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.XMLAnnotation

ATTR_NAME - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

attrInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

AttrPtg - Class in loci.poi.hssf.record.formula

"Special Attributes" This seems to be a Misc Stuff and Junk record.

AttrPtg() - Constructor for class loci.poi.hssf.record.formula.AttrPtg

AttrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AttrPtg

authenticationCodes - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

AUTOMATIC - Static variable in class loci.poi.hssf.record.CalcModeRecord

automatically calculate formulas (1)

AUTOMATIC_EXCEPT_TABLES - Static variable in class loci.poi.hssf.record.CalcModeRecord

automatically calculate formulas except for tables (-1)

autoscale(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Perform autoscaling on the given BufferedImage.

autoscale(BufferedImage, int, int) - Static method in class loci.formats.gui.AWTImageTools

Perform autoscaling on the given BufferedImage; map min to 0 and max to 255.

autoscale(byte[], int, int, int, boolean) - Static method in class loci.formats.ImageTools

Perform autoscaling on the given byte array; map min to 0 and max to 255.

autoscaleBox - Variable in class loci.plugins.in.MainDialog

autoSizeColumn(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Adjusts the column width to fit the contents.

autoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

autoUpdate - Variable in class loci.formats.cache.Cache

Whether the cache should automatically update when a parameter changes.

available() - Method in class loci.common.NIOInputStream

available() - Method in class loci.common.RandomAccessInputStream

available() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Returns the number of bytes that can be read (or skipped over) from this input stream without blocking by the next caller of a method for this input stream.

available() - Method in class loci.poi.util.BlockingInputStream

available() - Method in class ome.scifio.io.NIOInputStream

available() - Method in class ome.scifio.io.RandomAccessInputStream

AVI_MAGIC_STRING - Static variable in class loci.formats.in.AVIReader

AVIReader - Class in loci.formats.in

AVIReader is the file format reader for AVI files.

AVIReader() - Constructor for class loci.formats.in.AVIReader

Constructs a new AVI reader.

AVIWriter - Class in loci.formats.out

AVIWriter is the file format writer for AVI files.

AVIWriter() - Constructor for class loci.formats.out.AVIWriter

avoidUndeclaredNamespaces(String) - Static method in class loci.common.xml.XMLTools

Replaces NS:tag with NS_tag for undeclared namespaces

avoidUndeclaredNamespaces(String) - Static method in class ome.scifio.xml.XMLTools

Replaces NS:tag with NS_tag for undeclared namespaces

AWTImageTools - Class in loci.formats.gui

A utility class with convenience methods for manipulating images in BufferedImage form.

ax - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The horizontal coordinate of the image origin in the canvas system, on the reference grid.

AXIS_TYPE_AXIS_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AXIS_TYPE_CATEGORY_OR_X_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord

AXIS_TYPE_MAIN - Static variable in class loci.poi.hssf.record.AxisParentRecord

AXIS_TYPE_MAJOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AXIS_TYPE_MINOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AXIS_TYPE_SECONDARY - Static variable in class loci.poi.hssf.record.AxisParentRecord

AXIS_TYPE_SERIES_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord

AXIS_TYPE_VALUE_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord

AXIS_TYPE_WALLS_OR_FLOOR - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AxisGuesser - Class in loci.formats

AxisGuesser guesses which blocks in a file pattern correspond to which dimensional axes (Z, T or C), potentially recommending an adjustment in dimension order within the files, depending on the confidence of each guess.

AxisGuesser(FilePattern, String, int, int, int, boolean) - Constructor for class loci.formats.AxisGuesser

Guesses dimensional axis assignments corresponding to the given file pattern, using the specified dimensional information from within each file as a guide.

AxisLineFormatRecord - Class in loci.poi.hssf.record

The axis line format record defines the axis type details.

AxisLineFormatRecord() - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord

AxisLineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord

Constructs a AxisLineFormat record and sets its fields appropriately.

AxisOptionsRecord - Class in loci.poi.hssf.record

The axis options record provides unit information and other various tidbits about the axis.

AxisOptionsRecord() - Constructor for class loci.poi.hssf.record.AxisOptionsRecord

AxisOptionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisOptionsRecord

Constructs a AxisOptions record and sets its fields appropriately.

AxisParentRecord - Class in loci.poi.hssf.record

The axis size and location NOTE: This source is automatically generated please do not modify this file.

AxisParentRecord() - Constructor for class loci.poi.hssf.record.AxisParentRecord

AxisParentRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisParentRecord

Constructs a AxisParent record and sets its fields appropriately.

AxisRecord - Class in loci.poi.hssf.record

The axis record defines the type of an axis.

AxisRecord() - Constructor for class loci.poi.hssf.record.AxisRecord

AxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisRecord

Constructs a Axis record and sets its fields appropriately.

axisTypes - Variable in class loci.formats.AxisGuesser

Guessed axis types.

AxisUsedRecord - Class in loci.poi.hssf.record

The number of axes used on a chart.

AxisUsedRecord() - Constructor for class loci.poi.hssf.record.AxisUsedRecord

AxisUsedRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisUsedRecord

Constructs a AxisUsed record and sets its fields appropriately.

ay - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The vertical coordinate of the image origin in the canvas system, on the reference grid.

B

ba - Variable in class mdbtools.libmdb.Holder

backend - Class in mdbtools.libmdb

backend() - Constructor for class mdbtools.libmdb.backend

backend_name - Variable in class mdbtools.libmdb.MdbFile

backend_name - Variable in class mdbtools.libmdb.MdbHandle

BACKGROUND_TABLE - Static variable in class loci.formats.in.LiFlimReader

backgroundColorIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

BackupRecord - Class in loci.poi.hssf.record

Title: Backup Record

BackupRecord() - Constructor for class loci.poi.hssf.record.BackupRecord

BackupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BackupRecord

Constructs a BackupRecord and sets its fields appropriately

BACKWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy

baos - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The ByteArrayOutputStream to store header data.

BarRecord - Class in loci.poi.hssf.record

The bar record is used to define a bar chart.

BarRecord() - Constructor for class loci.poi.hssf.record.BarRecord

BarRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BarRecord

Constructs a Bar record and sets its fields appropriately.

Base64Codec - Class in loci.formats.codec

Implements encoding (compress) and decoding (decompress) methods for Base64.

Base64Codec() - Constructor for class loci.formats.codec.Base64Codec

BaseCodec - Class in loci.formats.codec

BaseCodec contains default implementation and testing for classes implementing the Codec interface, and acts as a base class for any of the compression classes.

BaseCodec() - Constructor for class loci.formats.codec.BaseCodec

BaseHandler - Class in loci.common.xml

A legacy delegator class for ome.scifio.xml.BaseHandler.

BaseHandler() - Constructor for class loci.common.xml.BaseHandler

BaseHandler - Class in ome.scifio.xml

Top-level SAX handler.

BaseHandler() - Constructor for class ome.scifio.xml.BaseHandler

BaselineTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the set of tags found in the baseline TIFF specification as well as some common additional tags.

BaseMetadata - Interface in loci.formats.meta

A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.

basename - Variable in class loci.formats.in.ZeissTIFFHandler.Plane

BaseTiffReader - Class in loci.formats.in

BaseTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.

BaseTiffReader(String, String) - Constructor for class loci.formats.in.BaseTiffReader

Constructs a new BaseTiffReader.

BaseTiffReader(String, String[]) - Constructor for class loci.formats.in.BaseTiffReader

Constructs a new BaseTiffReader.

BaseZeissReader - Class in loci.formats.in

BaseZeissReader contains common functionality required by readers for Zeiss AxioVision formats.

BaseZeissReader(String, String) - Constructor for class loci.formats.in.BaseZeissReader

Constructs a new ZeissZVI reader.

BaseZeissReader(String, String[]) - Constructor for class loci.formats.in.BaseZeissReader

Constructs a new ZeissZVI reader.

BaseZeissReader.Context - Enum in loci.formats.in

BaseZeissReader.Tag - Class in loci.formats.in

Content of a single tag from a Tags block.

BaseZeissReader.Tag(int, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag

Constructor.

BaseZeissReader.Tag(int, String, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag

Constructor.

BasicAnnotation - Class in ome.xml.model

BasicAnnotation() - Constructor for class ome.xml.model.BasicAnnotation

Default constructor.

BasicAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BasicAnnotation

Constructs BasicAnnotation recursively from an XML DOM tree.

BasicAnnotation(BasicAnnotation) - Constructor for class ome.xml.model.BasicAnnotation

Copy constructor.

BATBlock - Class in loci.poi.poifs.storage

A block of block allocation table entries.

BATManaged - Interface in loci.poi.poifs.filesystem

This interface defines behaviors for objects managed by the Block Allocation Table (BAT).

BDReader - Class in loci.formats.in

BDReader is the file format reader for BD Pathway datasets.

BDReader() - Constructor for class loci.formats.in.BDReader

Constructs a new ScanR reader.

BEBufferedRandomAccessFile - Class in jj2000.j2k.io

This class defines a Buffered Random Access File, where all I/O is considered to be big-endian, and extends the BufferedRandomAccessFile class.

BEBufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

BEBufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

BEBufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

BEBufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

beforeRecordSerialize(int, short, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener

Fired before a given escher record is serialized.

beforeRecordSerialize(int, short, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener

beginDecoding() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

This routine is called prior to a sequence of calls to the decode method, in order to allow any necessary tables or other structures to be initialized based on metadata values.

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

Invokes the superclass method and then sets instance variables on the basis of the metadata set on this decompressor.

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

BeginRecord - Class in loci.poi.hssf.record

The begin record defines the start of a block of records for a (grpahing data object.

BeginRecord() - Constructor for class loci.poi.hssf.record.BeginRecord

BeginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BeginRecord

Constructs a BeginRecord record and sets its fields appropriately.

BETA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the second lifting step coefficient

BETA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the second lifting step coefficient

BF - Class in loci.plugins

Miscellaneous LOCI plugins utility methods.

BFVirtualStack - Class in loci.plugins.util

Subclass of VirtualStack that uses Bio-Formats to read planes on demand.

BFVirtualStack(String, IFormatReader, boolean, boolean, boolean) - Constructor for class loci.plugins.util.BFVirtualStack

bgrToRgb(byte[], boolean, int, int) - Static method in class loci.formats.ImageTools

BH_HEADER_CHKSUM - Static variable in class loci.formats.in.SDTInfo

BH_HEADER_NOT_VALID - Static variable in class loci.formats.in.SDTInfo

BH_HEADER_VALID - Static variable in class loci.formats.in.SDTInfo

BI_BITFIELDS - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_JPEG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_PNG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_RLE4 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_RLE8 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BiffViewer - Class in loci.poi.hssf.dev

Utillity for reading in BIFF8 records and displaying data from them.

BiffViewer(String[]) - Constructor for class loci.poi.hssf.dev.BiffViewer

Creates new BiffViewer

BIFormatReader - Class in loci.formats.in

BIFormatReader is the superclass for file format readers that use java.awt.image.BufferedImage as the native data type.

BIFormatReader(String, String) - Constructor for class loci.formats.in.BIFormatReader

Constructs a new BIFormatReader.

BIFormatReader(String, String[]) - Constructor for class loci.formats.in.BIFormatReader

Constructs a new BIFormatReader.

BIG - Static variable in class loci.formats.tiff.TiffConstants

BIG_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType

Identifier for big-endian byte ordering (i.e.

BIG_SPOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

BIG_SPOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Large spots

BIG_TIFF - Static variable in class loci.formats.tiff.IFD

BIG_TIFF_BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants

The number of bytes in each IFD entry of a BigTIFF file.

BIG_TIFF_MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants

BinaryDataInput - Interface in jj2000.j2k.io

This interface defines the input of binary data from streams and/or files.

BinaryDataOutput - Interface in jj2000.j2k.io

This interface defines the output of binary data to streams and/or files.

BinaryFile - Class in ome.xml.model

BinaryFile() - Constructor for class ome.xml.model.BinaryFile

Default constructor.

BinaryFile(Element, OMEModel) - Constructor for class ome.xml.model.BinaryFile

Constructs BinaryFile recursively from an XML DOM tree.

BinaryFile(BinaryFile) - Constructor for class ome.xml.model.BinaryFile

Copy constructor.

BinaryOnly - Class in ome.xml.model

BinaryOnly() - Constructor for class ome.xml.model.BinaryOnly

Default constructor.

BinaryOnly(Element, OMEModel) - Constructor for class ome.xml.model.BinaryOnly

Constructs BinaryOnly recursively from an XML DOM tree.

BinaryOnly(BinaryOnly) - Constructor for class ome.xml.model.BinaryOnly

Copy constructor.

BinaryTree - Class in loci.poi.util

Red-Black tree-based implementation of Map.

BinaryTree() - Constructor for class loci.poi.util.BinaryTree

Construct a new BinaryTree

BinaryTree(Map) - Constructor for class loci.poi.util.BinaryTree

Constructs a new BinaryTree from an existing Map, with keys and values sorted

bind_ptr - Variable in class mdbtools.libmdb.MdbColumn

BinData - Class in ome.xml.model

BinData() - Constructor for class ome.xml.model.BinData

Default constructor.

BinData(Element, OMEModel) - Constructor for class ome.xml.model.BinData

Constructs BinData recursively from an XML DOM tree.

BinData(BinData) - Constructor for class ome.xml.model.BinData

Copy constructor.

Binning - Enum in ome.xml.model.enums

BinningEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Binning.

BinningEnumHandler() - Constructor for class ome.xml.model.enums.handlers.BinningEnumHandler

BioFormatsExtensionPrinter - Class in loci.formats.tools

This class is used to generate a text file containing all of the image file extensions supported by Bio-Formats.

BioFormatsExtensionPrinter() - Constructor for class loci.formats.tools.BioFormatsExtensionPrinter

BioRadGelReader - Class in loci.formats.in

BioRadGelReader is the file format reader for Bio-Rad gel files.

BioRadGelReader() - Constructor for class loci.formats.in.BioRadGelReader

Constructs a new Bio-Rad gel reader.

BioRadReader - Class in loci.formats.in

BioRadReader is the file format reader for Bio-Rad PIC files.

BioRadReader() - Constructor for class loci.formats.in.BioRadReader

Constructs a new BioRadReader.

BioRadSCNReader - Class in loci.formats.in

BioRadSCNReader is the reader for Bio-Rad .scn files Source code: Trac, Gitweb

BioRadSCNReader() - Constructor for class loci.formats.in.BioRadSCNReader

Constructs a new Bio-Rad .scn reader.

BitBuffer - Class in loci.formats.codec

A class for reading arbitrary numbers of bits from a byte array.

BitBuffer(byte[]) - Constructor for class loci.formats.codec.BitBuffer

Default constructor.

BitField - Class in loci.poi.util

Manage operations dealing with bit-mapped fields.

BitField(int) - Constructor for class loci.poi.util.BitField

Create a BitField instance

BitFieldFactory - Class in loci.poi.util

Returns immutable Btfield instances.

BitFieldFactory() - Constructor for class loci.poi.util.BitFieldFactory

BitFile - Class in com.sun.media.imageioimpl.common

Came from GIFEncoder initially.

BitFile(ImageOutputStream, boolean) - Constructor for class com.sun.media.imageioimpl.common.BitFile

BitOutputBuffer - Class in jj2000.j2k.codestream.writer

This class implements a buffer for writing bits, with the required bit stuffing policy for the packet headers.

BitOutputBuffer() - Constructor for class jj2000.j2k.codestream.writer.BitOutputBuffer

Creates a new BitOutputBuffer width a buffer of length 'SZ_INIT'.

bits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Output bit buffer.

BITS_PER_COMPONENT_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

BITS_PER_SAMPLE - Static variable in class loci.formats.tiff.IFD

BitsPerComponentBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Bits Per Component Box of JPEG JP2 file format.

BitsPerComponentBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Counstructs a BitsPerComponentBox from the provided byte array containing the bit depths of each color component.

BitsPerComponentBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Constructs a BitsPerComponentBox based on the provide org.w3c.dom.Node.

bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

bitsPerPixel - Variable in class loci.formats.CoreMetadata

Number of valid bits per pixel.

bitsPerSample - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the BitsPerSample tag.

bitsPerSample - Variable in class loci.formats.codec.CodecOptions

Number of bits per channel.

BitstreamReaderAgent - Class in jj2000.j2k.codestream.reader

This is the generic interface for bit stream reader agents.

BitstreamReaderAgent(HeaderDecoder, DecoderSpecs) - Constructor for class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Initializes members of this class.

BitWriter - Class in loci.formats.codec

A class for writing arbitrary numbers of bits to a byte array.

BitWriter() - Constructor for class loci.formats.codec.BitWriter

Constructs a new bit writer.

BitWriter(int) - Constructor for class loci.formats.codec.BitWriter

Constructs a new bit writer with the given initial buffer size.

BLACK - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

The CCITT numerical definition of black.

blankImage(int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates a blank image with the given dimensions and transfer type.

BlankRecord - Class in loci.poi.hssf.record

Title: Blank cell record

BlankRecord() - Constructor for class loci.poi.hssf.record.BlankRecord

Creates a new instance of BlankRecord

BlankRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BlankRecord

Constructs a BlankRecord and sets its fields appropriately

BLIP__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties

BLIP__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties

BLIP__BLIPTODISPLAY - Static variable in class loci.poi.ddf.EscherProperties

BLIP__BRIGHTNESSSETTING - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CONTRASTSETTING - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMLEFT - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMRIGHT - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMTOP - Static variable in class loci.poi.ddf.EscherProperties

BLIP__DOUBLEMOD - Static variable in class loci.poi.ddf.EscherProperties

BLIP__GAMMA - Static variable in class loci.poi.ddf.EscherProperties

BLIP__NOHITTESTPICTURE - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREACTIVE - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREBILEVEL - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREFILLMOD - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREGRAY - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREID - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTURELINE - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PRINTBLIP - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PRINTBLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PRINTFLAGS - Static variable in class loci.poi.ddf.EscherProperties

BLIP__TRANSPARENTCOLOR - Static variable in class loci.poi.ddf.EscherProperties

BlkImgDataSrc - Interface in jj2000.j2k.image

This interface defines the methods to transfer image data in blocks, without following any particular order (random access).

BLOCK_END - Static variable in class loci.formats.FilePatternBlock

BLOCK_SIZE - Static variable in class loci.poi.hssf.record.DBCellRecord

BLOCK_START - Static variable in class loci.formats.FilePatternBlock

BlockAllocationTableReader - Class in loci.poi.poifs.storage

This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.

BlockAllocationTableReader(int, int[], int, int, BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader

create a BlockAllocationTableReader for an existing filesystem.

BlockAllocationTableWriter - Class in loci.poi.poifs.storage

This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.

BlockAllocationTableWriter() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableWriter

create a BlockAllocationTableWriter

BlockingInputStream - Class in loci.poi.util

Implementation of a BlockingInputStream to provide data to RawDataBlock that expects data in 512 byte chunks.

BlockingInputStream(InputStream) - Constructor for class loci.poi.util.BlockingInputStream

blockLength - Variable in class loci.formats.in.SDTInfo

reserved2 now contains block (set) length.

BlockList - Interface in loci.poi.poifs.storage

Interface for lists of blocks that are mapped by block allocation tables

blockNo - Variable in class loci.formats.in.SDTInfo

Number of the block in the file.

blockType - Variable in class loci.formats.in.SDTInfo

See blockType defines below.

BlockWritable - Interface in loci.poi.poifs.storage

An interface for persisting block storage of POIFS components.

blue - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

blue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

BMP_MAGIC_STRING - Static variable in class loci.formats.in.BMPReader

BMPConstants - Interface in com.sun.media.imageioimpl.plugins.bmp

BMPImageReader - Class in com.sun.media.imageioimpl.plugins.bmp

This class is the Java Image IO plugin reader for BMP images.

BMPImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Constructs BMPImageReader from the provided ImageReaderSpi.

BMPImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

BMPImageWriteParam - Class in com.sun.media.imageio.plugins.bmp

A subclass of ImageWriteParam for encoding images in the BMP format.

BMPImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Constructs a BMPImageWriteParam set to use a given Locale and with default values for all parameters.

BMPImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Constructs an BMPImageWriteParam object with default values for all parameters and a null Locale.

BMPImageWriter - Class in com.sun.media.imageioimpl.plugins.bmp

The Java Image IO plugin writer for encoding a binary RenderedImage into a BMP format.

BMPImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

Constructs BMPImageWriter based on the provided ImageWriterSpi.

BMPImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

BMPMetadata - Class in com.sun.media.imageioimpl.plugins.bmp

BMPMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

BMPMetadata(IIOMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

BMPMetadataFormat - Class in com.sun.media.imageioimpl.plugins.bmp

BMPMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.bmp

BMPMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources

BMPReader - Class in loci.formats.in

BMPReader is the file format reader for Microsoft Bitmap (BMP) files.

BMPReader() - Constructor for class loci.formats.in.BMPReader

Constructs a new BMP reader.

bmpVersion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

bms - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

By-pass mode specifications

BOFRecord - Class in loci.poi.hssf.record

Title: Beginning Of File

BOFRecord() - Constructor for class loci.poi.hssf.record.BOFRecord

Constructs an empty BOFRecord with no fields set.

BOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BOFRecord

Constructs a BOFRecord and sets its fields appropriately

BogusColorSpace - Class in com.sun.media.imageioimpl.common

A dummy ColorSpace to enable ColorModel for image data which do not have an innate color representation.

BogusColorSpace(int) - Constructor for class com.sun.media.imageioimpl.common.BogusColorSpace

Constructs a bogus ColorSpace.

BOLDWEIGHT_BOLD - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Bold boldness (bold)

BOLDWEIGHT_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Normal boldness (not bold)

book - Variable in class loci.poi.hssf.usermodel.HSSFSheet

BookBoolRecord - Class in loci.poi.hssf.record

Title: Save External Links record (BookBool)

BookBoolRecord() - Constructor for class loci.poi.hssf.record.BookBoolRecord

BookBoolRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BookBoolRecord

Constructs a BookBoolRecord and sets its fields appropriately

BooleanAnnotation - Class in ome.xml.model

BooleanAnnotation() - Constructor for class ome.xml.model.BooleanAnnotation

Default constructor.

BooleanAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BooleanAnnotation

Constructs BooleanAnnotation recursively from an XML DOM tree.

BooleanAnnotation(BooleanAnnotation) - Constructor for class ome.xml.model.BooleanAnnotation

Copy constructor.

BooleanOption - Class in loci.plugins.prefs

A boolean option for one of the LOCI plugins.

BooleanOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.BooleanOption

Constructs a boolean option with the parameters from the given map.

BooleanOption(String, boolean, String, String, boolean) - Constructor for class loci.plugins.prefs.BooleanOption

Constructs a boolean option with the given parameters.

BoolErrRecord - Class in loci.poi.hssf.record

Creates new BoolErrRecord.

BoolErrRecord() - Constructor for class loci.poi.hssf.record.BoolErrRecord

Creates new BoolErrRecord

BoolErrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoolErrRecord

Constructs a BoolErr record and sets its fields appropriately.

BoolPtg - Class in loci.poi.hssf.record.formula

Boolean (boolean) Stores a (java) boolean value in a formula.

BoolPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.BoolPtg

BoolPtg(String) - Constructor for class loci.poi.hssf.record.formula.BoolPtg

BORDER - Static variable in class loci.plugins.shortcut.ShortcutPanel

Number of pixels for window border.

BORDER_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dash-dot border

BORDER_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dash-dot-dot border

BORDER_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dash border

BORDER_DOTTED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

hair-line border

BORDER_DOUBLE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

double-line border

BORDER_HAIR - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dot border

BORDER_MEDIUM - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Medium border

BORDER_MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

medium dash-dot border

BORDER_MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

medium dash-dot-dot border

BORDER_MEDIUM_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Medium dashed border

BORDER_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

No border

BORDER_SLANTED_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

slanted dash-dot border

BORDER_THICK - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thick border

BORDER_THIN - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thin border

BORDER_TYPE_REGULAR - Static variable in class loci.poi.hssf.record.FrameRecord

BORDER_TYPE_SHADOW - Static variable in class loci.poi.hssf.record.FrameRecord

bordL - Variable in class loci.formats.in.SDTInfo

bordU - Variable in class loci.formats.in.SDTInfo

BottomMargin - Static variable in class loci.poi.hssf.model.Sheet

BottomMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

BottomMarginRecord - Class in loci.poi.hssf.record

Record for the bottom margin.

BottomMarginRecord() - Constructor for class loci.poi.hssf.record.BottomMarginRecord

BottomMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BottomMarginRecord

Constructs a BottomMargin record and sets its fields appropriately.

BoundSheetRecord - Class in loci.poi.hssf.record

Title: Bound Sheet Record (aka BundleSheet)

BoundSheetRecord() - Constructor for class loci.poi.hssf.record.BoundSheetRecord

BoundSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoundSheetRecord

Constructs a BoundSheetRecord and sets its fields appropriately

boundsheets - Variable in class loci.poi.hssf.model.Workbook

holds the "boundsheet" records (aka bundlesheet) so that they can have their reference to their "BOF" marker

Box - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to create the box of JP2 file format.

Box(int, int, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box instance using the provided the box type and the box content in byte array format.

Box(int, int, long, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box instance using the provided the box type, the box extra length, and the box content in byte array format.

Box(ImageInputStream, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box instance from the provided ImageInputStream at the specified position.

Box(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box from an "unknown" Node.

BOX_SIZE - Static variable in class loci.formats.in.FakeReader

bpp - Variable in class loci.formats.in.BaseZeissReader

Number of bytes per pixel.

BRICKS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

BRICKS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Brick-like layout

BRIGHTNESS_VALUE - Static variable in class loci.formats.tiff.IFD

BrowserOptionsWindow - Class in loci.plugins.util

Extension of JFrame that allows the user to adjust caching settings.

BrowserOptionsWindow(String, Cache, String[]) - Constructor for class loci.plugins.util.BrowserOptionsWindow

BrukerReader - Class in loci.formats.in

BrukerReader is the file format reader for Bruker MRI files.

BrukerReader() - Constructor for class loci.formats.in.BrukerReader

Constructs a new Bruker reader.

BSTORE_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

BT_DIB - Static variable in class loci.poi.ddf.EscherBSERecord

BT_EMF - Static variable in class loci.poi.ddf.EscherBSERecord

BT_ERROR - Static variable in class loci.poi.ddf.EscherBSERecord

BT_JPEG - Static variable in class loci.poi.ddf.EscherBSERecord

BT_PICT - Static variable in class loci.poi.ddf.EscherBSERecord

BT_PNG - Static variable in class loci.poi.ddf.EscherBSERecord

BT_UNKNOWN - Static variable in class loci.poi.ddf.EscherBSERecord

BT_WMF - Static variable in class loci.poi.ddf.EscherBSERecord

BUBBLE_SERIES_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord

BUBBLE_SERIES_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord

BUBBLE_SERIES_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord

BUBBLE_SERIES_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord

BUF_DEF_LEN - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The default initial buffer size

BUF_INC - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The buffer increase size

buffer - Variable in class ome.scifio.io.ByteArrayHandle

Backing ByteBuffer.

buffer - Variable in class ome.scifio.io.NIOFileHandle

The buffer itself.

BufferedImageReader - Class in loci.formats.gui

A reader wrapper for reading image planes as BufferedImage objects.

BufferedImageReader() - Constructor for class loci.formats.gui.BufferedImageReader

Constructs a BufferedImageReader around a new image reader.

BufferedImageReader(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageReader

Constructs a BufferedImageReader with the given reader.

BufferedImageSource - Class in loci.formats.gui

Retrieves BufferedImages from a data source using Bio-Formats.

BufferedImageSource(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageSource

BufferedImageWriter - Class in loci.formats.gui

A writer wrapper for writing image planes from BufferedImage objects.

BufferedImageWriter() - Constructor for class loci.formats.gui.BufferedImageWriter

Constructs a BufferedImageWriter around a new image writer.

BufferedImageWriter(IFormatWriter) - Constructor for class loci.formats.gui.BufferedImageWriter

Constructs a BufferedImageWriter with the given writer.

BufferedRandomAccessFile - Class in jj2000.j2k.io

This class defines a Buffered Random Access File.

BufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

BufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

BufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

BufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

bufferSize - Variable in class ome.scifio.io.NIOFileHandle

The buffer size.

bufferStartPosition - Variable in class ome.scifio.io.NIOFileHandle

The absolute position of the start of the buffer.

bugaddr - Static variable in class jj2000.j2k.JJ2KInfo

The bug reporting e-mail address

BUILD - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default 0x10d3

BUILD_YEAR - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default 0x07CC (1996)

buildExtensions() - Method in class loci.plugins.macro.MacroFunctions

Builds the list of extensions, using reflection, from public methods of this class.

buildFileChooser(IFormatHandler) - Static method in class loci.formats.gui.GUITools

Constructs a file chooser for the given file format handler.

buildFileChooser(IFormatHandler, boolean) - Static method in class loci.formats.gui.GUITools

Constructs a file chooser for the given file format handler.

buildFileChooser(FileFilter[]) - Static method in class loci.formats.gui.GUITools

Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter.

buildFileChooser(FileFilter[], boolean) - Static method in class loci.formats.gui.GUITools

Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter, if one is not already specified.

buildFileFilters(IFormatHandler) - Static method in class loci.formats.gui.GUITools

Constructs a list of file filters for the given file format handler.

buildFontCharactersProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails

buildFontHeightProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails

buildFontWidthsProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails

buildFunction(Function, Object) - Method in class mdbtools.dbengine.Tests

buildFunction(Aggregate, Object) - Method in class mdbtools.dbengine.Tests

buildPalette() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

BUILTIN_AUTO_ACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_AUTO_CLOSE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_AUTO_DEACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_AUTO_OPEN - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_CONSOLIDATE_AREA - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_CRITERIA - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_DATA_FORM - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_DATABASE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_PRINT_AREA - Static variable in class loci.poi.hssf.record.NameRecord

BUILTIN_PRINT_TITLE - Static variable in class loci.poi.hssf.record.NameRecord

BUILTIN_RECORDER - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_SHEET_TITLE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BurleighReader - Class in loci.formats.in

BurleighReader is the file format reader for Burleigh .img files.

BurleighReader() - Constructor for class loci.formats.in.BurleighReader

Constructs a new Burleigh reader.

BYTE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

ByteArrayHandle - Class in loci.common

Legacy delegator class for ome.scifio.io.ByteArrayHandle.

ByteArrayHandle(byte[]) - Constructor for class loci.common.ByteArrayHandle

Creates a random access byte stream to read from, and write to, the bytes specified by the byte[] argument.

ByteArrayHandle(ByteBuffer) - Constructor for class loci.common.ByteArrayHandle

ByteArrayHandle(int) - Constructor for class loci.common.ByteArrayHandle

Creates a random access byte stream to read from, and write to.

ByteArrayHandle() - Constructor for class loci.common.ByteArrayHandle

Creates a random access byte stream to write to a byte array.

ByteArrayHandle - Class in ome.scifio.io

A wrapper for a byte array that implements the IRandomAccess interface.

ByteArrayHandle(byte[]) - Constructor for class ome.scifio.io.ByteArrayHandle

Creates a random access byte stream to read from, and write to, the bytes specified by the byte[] argument.

ByteArrayHandle(ByteBuffer) - Constructor for class ome.scifio.io.ByteArrayHandle

ByteArrayHandle(int) - Constructor for class ome.scifio.io.ByteArrayHandle

Creates a random access byte stream to read from, and write to.

ByteArrayHandle() - Constructor for class ome.scifio.io.ByteArrayHandle

Creates a random access byte stream to write to a byte array.

byteArraySet(byte[], byte) - Static method in class jj2000.j2k.util.ArrayUtil

Reinitializes a byte array to the given value in an optimized way.

ByteArraySource - Class in loci.formats.cache

Retrieves byte arrays from a data source (e.g., a file) using Bio-Formats.

ByteArraySource(IFormatReader) - Constructor for class loci.formats.cache.ByteArraySource

Constructs a byte array source from the given Bio-Formats reader.

ByteArraySource(String) - Constructor for class loci.formats.cache.ByteArraySource

Constructs a byte array source that draws from the given file.

byteBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Buffer of bytes containing the part of the file that is currently being accessed

byteBufferChanged - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Boolean keeping track of whether the byte buffer has been changed since it was read.

byteBufferProvider - Variable in class ome.scifio.io.NIOFileHandle

Provider class for NIO byte buffers, allocated or memory mapped.

byteCount - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The number of bytes of data from the source ImageInputStream to be decompressed.

ByteField - Class in loci.poi.util

representation of a byte (8-bit) field at a fixed location within a byte array

ByteField(int) - Constructor for class loci.poi.util.ByteField

construct the ByteField with its offset into its containing byte array and a default value of 0

ByteField(int, byte) - Constructor for class loci.poi.util.ByteField

construct the ByteField with its offset into its containing byte array and initialize its value

ByteField(int, byte[]) - Constructor for class loci.poi.util.ByteField

Construct the ByteField with its offset into its containing byte array and initialize its value from its byte array

ByteField(int, byte, byte[]) - Constructor for class loci.poi.util.ByteField

construct the ByteField with its offset into its containing byte array, initialize its value, and write its value to its byte array

ByteInputBuffer - Class in jj2000.j2k.entropy.decoder

This class provides a byte input facility from byte buffers.

ByteInputBuffer(byte[]) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer

Creates a new byte array input stream that reads data from the specified byte array.

ByteInputBuffer(byte[], int, int) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer

Creates a new byte array input stream that reads data from the specified byte array.

byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

byteOrder - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's byte order.

byteOrdering - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

ByteOutputBuffer - Class in jj2000.j2k.entropy.encoder

This class provides a buffering output stream similar to ByteArrayOutputStream, with some additional methods.

ByteOutputBuffer() - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Creates a new byte array output stream.

ByteOutputBuffer(int) - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Creates a new byte array output stream, with a buffer capacity of the specified size, in bytes.

bytes - Variable in class loci.formats.tiff.TiffSaver

Output bytes.

bytes - Variable in class loci.poi.hpsf.ClassID

The bytes making out the class ID in correct order, i.e.

BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants

The number of bytes in each IFD entry.

bytesToDouble(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a double.

bytesToDouble(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

bytesToDouble(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a double.

bytesToDouble(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a double.

bytesToDouble(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

bytesToDouble(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a double.

bytesToDouble(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a double.

bytesToDouble(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

bytesToDouble(byte[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 8 bytes of a byte array to a double.

bytesToDouble(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a double.

bytesToDouble(short[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

bytesToDouble(short[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 8 bytes of a byte array to a double.

bytesToFloat(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a float.

bytesToFloat(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

bytesToFloat(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to a float.

bytesToFloat(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond a given offset to a float.

bytesToFloat(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

bytesToFloat(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to a float.

bytesToFloat(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a float.

bytesToFloat(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

bytesToFloat(byte[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 4 bytes of a byte array to a float.

bytesToFloat(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array beyond a given offset to a float.

bytesToFloat(short[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

bytesToFloat(short[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 4 bytes of a byte array to a float.

bytesToHex(byte[]) - Static method in class loci.common.DataTools

Translates the given byte array into a String of hexadecimal digits.

bytesToHex(byte[]) - Static method in class ome.scifio.common.DataTools

Translates the given byte array into a String of hexadecimal digits.

bytesToInt(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to an int.

bytesToInt(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

bytesToInt(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to an int.

bytesToInt(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to an int.

bytesToInt(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

bytesToInt(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to an int.

bytesToInt(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to an int.

bytesToInt(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

bytesToInt(byte[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 4 bytes of a byte array to an int.

bytesToInt(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to an int.

bytesToInt(short[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

bytesToInt(short[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 4 bytes of a byte array to an int.

bytesToLong(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a long.

bytesToLong(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

bytesToLong(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a long.

bytesToLong(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a long.

bytesToLong(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

bytesToLong(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a long.

bytesToLong(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a long.

bytesToLong(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

bytesToLong(byte[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 8 bytes of a byte array to a long.

bytesToLong(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a long.

bytesToLong(short[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

bytesToLong(short[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 8 bytes of a byte array to a long.

bytesToShort(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a short.

bytesToShort(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array beyond the given offset to a short.

bytesToShort(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array to a short.

bytesToShort(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array byond the given offset to a short.

bytesToShort(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array byond the given offset to a short.

bytesToShort(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array to a short.

bytesToShort(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a short.

bytesToShort(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 2 bytes of a byte array beyond the given offset to a short.

bytesToShort(byte[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 2 bytes of a byte array to a short.

bytesToShort(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first len bytes of a byte array byond the given offset to a short.

bytesToShort(short[], int, boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 2 bytes of a byte array byond the given offset to a short.

bytesToShort(short[], boolean) - Static method in class ome.scifio.common.DataTools

Translates up to the first 2 bytes of a byte array to a short.

byteTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

byteValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a byte.

ByteVector - Class in loci.formats.codec

A growable array of bytes.

ByteVector() - Constructor for class loci.formats.codec.ByteVector

ByteVector(int) - Constructor for class loci.formats.codec.ByteVector

ByteVector(byte[]) - Constructor for class loci.formats.codec.ByteVector

BZip2Handle - Class in loci.common

Legacy delegator class for ome.scifio.io.BZip2Handle.

BZip2Handle(String) - Constructor for class loci.common.BZip2Handle

Construct a new BZip2Handle corresponding to the given file.

BZip2Handle - Class in ome.scifio.io

StreamHandle implementation for reading from BZip2-compressed files or byte arrays.

BZip2Handle(String) - Constructor for class ome.scifio.io.BZip2Handle

Construct a new BZip2Handle corresponding to the given file.

C

C - Static variable in class loci.formats.AxisGuesser

Prefix endings indicating channel dimension.

c - Variable in class loci.formats.tools.AmiraParameters

C01_MAGIC_BYTES - Static variable in class loci.formats.in.CellomicsReader

C_AXIS - Static variable in class loci.formats.AxisGuesser

Axis type for channels.

C_KEY - Static variable in class loci.formats.in.LiFlimReader

C_STRING - Static variable in class loci.formats.in.SDTInfo

Cache - Class in loci.formats.cache

Cache provides a means of managing subsets of large collections of image planes in memory.

Cache(ICacheStrategy, ICacheSource, boolean) - Constructor for class loci.formats.cache.Cache

Constructs an object cache with the given cache strategy and source.

cache - Variable in class loci.formats.cache.Cache

Master array containing cached objects.

cache - Variable in class loci.plugins.util.BFVirtualStack

CacheComponent - Class in loci.formats.gui

GUI component for managing a cache.

CacheComponent(Cache, String[]) - Constructor for class loci.formats.gui.CacheComponent

Creates a cache GUI component.

CacheComponent(Cache, String[], String) - Constructor for class loci.formats.gui.CacheComponent

Creates a cache GUI component with the ability to change between the various source types (mainly for debugging purposes).

CacheConsole - Class in loci.formats.tools

CacheConsole provides an interactive interpreter for testing the Bio-Formats caching implementation.

cacheDirectoryListings(boolean) - Static method in class loci.common.Location

Turn cacheing of directory listings on or off.

cacheDirectoryListings(boolean) - Static method in class ome.scifio.io.Location

Turn cacheing of directory listings on or off.

CacheEvent - Class in loci.formats.cache

A event indicating a cache update.

CacheEvent(Object, int) - Constructor for class loci.formats.cache.CacheEvent

Constructs a cache event.

CacheEvent(Object, int, int) - Constructor for class loci.formats.cache.CacheEvent

Constructs a cache event.

CacheException - Exception in loci.formats.cache

CacheException is the exception thrown when something goes wrong performing a cache operation.

CacheException() - Constructor for exception loci.formats.cache.CacheException

CacheException(String) - Constructor for exception loci.formats.cache.CacheException

CacheException(String, Throwable) - Constructor for exception loci.formats.cache.CacheException

CacheException(Throwable) - Constructor for exception loci.formats.cache.CacheException

CacheIndicator - Class in loci.formats.gui

Indicator GUI component showing which planes are currently in the cache for a given dimensional axis at a particular dimensional position.

CacheIndicator(Cache, int) - Constructor for class loci.formats.gui.CacheIndicator

Creates a new cache indicator for the given cache.

CacheIndicator(Cache, int, Component, int, int) - Constructor for class loci.formats.gui.CacheIndicator

Creates a new cache indicator.

CacheListener - Interface in loci.formats.cache

A listener for cache updates.

CacheReporter - Interface in loci.formats.cache

Interface for components capable of reporting cache updates.

CacheSource - Class in loci.formats.cache

Superclass of cache sources that retrieve image planes from a data source (e.g., a file) using Bio-Formats.

CacheSource(IFormatReader) - Constructor for class loci.formats.cache.CacheSource

Constructs a cache source from the given Bio-Formats reader.

CacheSource(String) - Constructor for class loci.formats.cache.CacheSource

Constructs a cache source that draws from the given file.

CacheStrategy - Class in loci.formats.cache

Superclass of cache strategies.

CacheStrategy(int[]) - Constructor for class loci.formats.cache.CacheStrategy

Constructs a cache strategy.

cacheUpdated(CacheEvent) - Method in interface loci.formats.cache.CacheListener

Called when cache is updated.

cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheComponent

Updates GUI to match latest cache state.

cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheIndicator

CacheUpdater - Class in loci.formats.cache

Thread responsible for updating the cache (loading and dropping planes) in the background.

CacheUpdater(Cache) - Constructor for class loci.formats.cache.CacheUpdater

CalcCountRecord - Class in loci.poi.hssf.record

Title: Calc Count Record Description: Specifies the maximum times the gui should perform a formula recalculation.

CalcCountRecord() - Constructor for class loci.poi.hssf.record.CalcCountRecord

CalcCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcCountRecord

Constructs a CalcCountRecord and sets its fields appropriately

calcExtSSTRecordSize() - Method in class loci.poi.hssf.record.SSTRecord

Calculates the size in bytes of the EXTSST record as it would be if the record was serialized.

calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.

calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.

CalcModeRecord - Class in loci.poi.hssf.record

Title: Calc Mode Record

CalcModeRecord() - Constructor for class loci.poi.hssf.record.CalcModeRecord

CalcModeRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcModeRecord

Constructs a CalcModeRecord and sets its fields appropriately

calcPhotons - Variable in class loci.formats.in.SDTInfo

No of photons.

calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Calculates the parameters of the SubbandAn objects that depend on the Quantizer.

calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Calculates the parameters of the SubbandAn objects that depend on the Quantizer.

calcSize(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

Calculate the storage size of a set of SmallDocumentBlocks

calculateStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock

Calculate how many BATBlocks are needed to hold a specified number of BAT entries.

calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock

Calculate how many XBATBlocks are needed to hold a specified number of BAT entries.

Calibrator - Class in loci.plugins.in

Logic for calibrating images.

Calibrator(ImportProcess) - Constructor for class loci.plugins.in.Calibrator

CALLOUT__CALLOUTACCENTBAR - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTANGLE - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTDROPSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTDROPTYPE - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTLENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTMINUSX - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTMINUSY - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTTEXTBORDER - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTTYPE - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__DROPAUTO - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__ISCALLOUT - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__LENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__XYCALLOUTGAP - Static variable in class loci.poi.ddf.EscherProperties

CAN_GROUP - Static variable in class loci.formats.FormatTools

CAN_GROUP - Static variable in interface loci.formats.IFormatReader

cancel() - Method in class loci.plugins.in.ImportProcess

Cancels the import process.

canceled - Variable in class loci.plugins.LociImporter

Flag indicating whether last operation was canceled.

canceled - Variable in class loci.plugins.Slicer

Flag indicating whether last operation was canceled.

canceled - Variable in class loci.plugins.Updater

Flag indicating whether last operation was canceled.

canChangePattern() - Method in class loci.formats.FileStitcher

canCloseReader - Variable in class loci.formats.gui.ImageViewer

canCreatePalette(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Returns true if PaletteBuilder is able to create palette for given image type.

canCreatePalette(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Returns true if PaletteBuilder is able to create palette for given rendered image.

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

canDoQT() - Method in class loci.formats.gui.LegacyQTTools

Whether QuickTime is available to this JVM.

canDoStacks() - Method in class loci.formats.FormatWriter

canDoStacks() - Method in interface loci.formats.IFormatWriter

Reports whether the writer can save multiple images to a single file.

canDoStacks() - Method in class loci.formats.ImageWriter

canDoStacks() - Method in class loci.formats.out.APNGWriter

canDoStacks() - Method in class loci.formats.out.AVIWriter

canDoStacks() - Method in class loci.formats.out.ICSWriter

canDoStacks() - Method in class loci.formats.out.JavaWriter

canDoStacks() - Method in class loci.formats.out.JPEG2000Writer

Overridden to indicate that stacks are not supported.

canDoStacks() - Method in class loci.formats.out.LegacyQTWriter

canDoStacks() - Method in class loci.formats.out.OMEXMLWriter

canDoStacks() - Method in class loci.formats.out.QTWriter

canDoStacks() - Method in class loci.formats.out.TiffWriter

canDoStacks() - Method in class loci.formats.out.WlzWriter

canDoStacks() - Method in class loci.formats.WriterWrapper

canDoStacks() - Method in class loci.ome.io.OMEWriter

canDoUpgradeCheck() - Method in class loci.formats.UpgradeChecker

Return whether or not we are ever allowed to perform an upgrade check.

canEncodeImage(ImageWriter, ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Checks that the provided ImageWriter can encode the provided ImageTypeSpecifier or not.

canEncodeImage(ImageWriter, ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Checks that the provided ImageWriter can encode the provided ColorModel and SampleModel.

canEncodeImage(int, ColorModel, SampleModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

canEncodeImage(int, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

canFitInMemory(long) - Static method in class loci.tests.testng.TestTools

Returns true if a byte buffer of the given size will fit in memory.

canImport(JComponent, DataFlavor[]) - Method in class loci.plugins.shortcut.ShortcutTransferHandler

canInsertEmpty(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canInsertImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canMerge() - Method in class loci.formats.ChannelMerger

Determines whether the channels in the file can be merged.

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat

CANNOT_GROUP - Static variable in class loci.formats.FormatTools

CANNOT_GROUP - Static variable in interface loci.formats.IFormatReader

CanonRawReader - Class in loci.formats.in

CanonRawReader is the file format reader for Canon RAW files.

CanonRawReader() - Constructor for class loci.formats.in.CanonRawReader

Constructs a new Canon RAW reader.

canRead() - Method in class loci.common.Location

If the underlying location is a URL, this method will return true if the URL exists.

canRead(String) - Method in class loci.formats.itk.ITKBridgePipes

Tests whether the given file path can be parsed by Bio-Formats.

canRead() - Method in class ome.scifio.io.Location

If the underlying location is a URL, this method will return true if the URL exists.

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

canReplacePixels(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canWrite() - Method in class loci.common.Location

If the underlying location is a URL, this method will always return false.

canWrite(String) - Method in class loci.formats.itk.ITKBridgePipes

Tests whether the given file path can be written by Bio-Formats.

canWrite() - Method in class ome.scifio.io.Location

If the underlying location is a URL, this method will always return false.

canWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

CAPTURE_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CaseInsensitiveLocation - Class in loci.common

Legacy delegator class for CaseInsensitiveLocation Source code: Trac, Gitweb

CaseInsensitiveLocation(String) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(File) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(String, String) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(CaseInsensitiveLocation, String) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation - Class in ome.scifio.io

Case insensitive variant of Location.

CaseInsensitiveLocation(String) - Constructor for class ome.scifio.io.CaseInsensitiveLocation

CaseInsensitiveLocation(File) - Constructor for class ome.scifio.io.CaseInsensitiveLocation

CaseInsensitiveLocation(String, String) - Constructor for class ome.scifio.io.CaseInsensitiveLocation

CaseInsensitiveLocation(CaseInsensitiveLocation, String) - Constructor for class ome.scifio.io.CaseInsensitiveLocation

cat(byte[][]) - Static method in class loci.poi.hpsf.Util

Concatenates the contents of several byte arrays into a single one.

Catalog - Class in mdbtools.libmdb

Catalog() - Constructor for class mdbtools.libmdb.Catalog

catalog - Variable in class mdbtools.libmdb.MdbHandle

CATEGORY_DATA_TYPE_ALL_TEXT_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

CATEGORY_DATA_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_SHOW_LABELS_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

CATEGORY_DATA_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_VALUE_AND_PERCENTAGE_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

CategorySeriesAxisRecord - Class in loci.poi.hssf.record

This record refers to a category or series axis and is used to specify label/tickmark frequency.

CategorySeriesAxisRecord() - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord

CategorySeriesAxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord

Constructs a CategorySeriesAxis record and sets its fields appropriately.

cbLength - Variable in class jj2000.j2k.codestream.reader.PktInfo

The length of the code-block in this packet (in bytes)

cblk - Variable in class jj2000.j2k.codestream.PrecInfo

Code-blocks belonging to this precinct in each subbands of the resolution level

CBlkCoordInfo - Class in jj2000.j2k.codestream

This class is used to store the coordinates of code-blocks.

CBlkCoordInfo() - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo

Constructor.

CBlkCoordInfo(int, int) - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo

Constructor.

CBlkInfo - Class in jj2000.j2k.codestream.reader

This class contains location of code-blocks' piece of codewords (there is one piece per layer) and some other information.

CBlkInfo(int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.reader.CBlkInfo

Constructs a new instance with specified number of layers and code-block coordinates.

CBlkQuantDataSrcDec - Interface in jj2000.j2k.quantization.dequantizer

This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis, fro the decoder side.

CBlkQuantDataSrcEnc - Interface in jj2000.j2k.quantization.quantizer

This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis.

CBlkRateDistStats - Class in jj2000.j2k.entropy.encoder

This class stores coded (compressed) code-blocks with their associated rate-distortion statistics.

CBlkRateDistStats() - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Creates a new CBlkRateDistStats object without allocating any space for 'truncRates', 'truncSlopes', 'truncDists' and 'truncIdxs' or 'data'.

CBlkRateDistStats(int, int, int, byte[], int[], double[], boolean[], int, boolean) - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Creates a new CBlkRateDistStats object and initializes the valid truncation points, their rates and their slopes, from the 'rates' and 'dist' arrays.

cblks - Variable in class jj2000.j2k.decoder.DecoderSpecs

Code-blocks sizes specification

CBlkSizeSpec - Class in jj2000.j2k.entropy

This class extends ModuleSpec class for code-blocks sizes holding purposes.

CBlkSizeSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec

Creates a new CBlkSizeSpec object for the specified number of tiles and components.

CBlkSizeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec

Creates a new CBlkSizeSpec object for the specified number of tiles and components and the ParameterList instance.

CBlkWTData - Class in jj2000.j2k.wavelet.analysis

This is a generic abstract class to store a code-block of wavelet data, be it quantized or not.

CBlkWTData() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTData

CBlkWTDataFloat - Class in jj2000.j2k.wavelet.analysis

This is an implementation of the 'CBlkWTData' abstract class for 32 bit floating point data (float).

CBlkWTDataFloat() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

CBlkWTDataInt - Class in jj2000.j2k.wavelet.analysis

This is an implementation of the 'CBlkWTData' abstract class for signed 32 bit integer data.

CBlkWTDataInt() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

CBlkWTDataSrc - Interface in jj2000.j2k.wavelet.analysis

This abstract class defines methods to transfer wavelet data in a code-block by code-block basis.

CBlkWTDataSrcDec - Interface in jj2000.j2k.wavelet.synthesis

This abstract class defines methods to transfer wavelet data in a code-block by code-block basis, for the decoder side.

cbOff - Variable in class jj2000.j2k.codestream.reader.PktInfo

The code-block offset in the codestream (for this packet)

CBZip2InputStream - Class in loci.common

Legacy delegator class for ome.scifio.io.CBZip2InputStream.

CBZip2InputStream(InputStream) - Constructor for class loci.common.CBZip2InputStream

Constructs a new CBZip2InputStream which decompresses bytes read from the specified stream.

CBZip2InputStream - Class in ome.scifio.io

An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.

CBZip2InputStream(InputStream) - Constructor for class ome.scifio.io.CBZip2InputStream

Constructs a new CBZip2InputStream which decompresses bytes read from the specified stream.

ccoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

ccom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM

ce - Variable in class jj2000.j2k.entropy.Progression

Component index for the end of a progression.

CELL_LENGTH - Static variable in class loci.formats.tiff.IFD

CELL_TYPE_BLANK - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Blank Cell type (3)

CELL_TYPE_BOOLEAN - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Boolean Cell type (4)

CELL_TYPE_ERROR - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Error Cell type (5)

CELL_TYPE_FORMULA - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Formula Cell type (2)

CELL_TYPE_NUMERIC - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Numeric Cell type (0)

CELL_TYPE_STRING - Static variable in class loci.poi.hssf.usermodel.HSSFCell

String Cell type (1)

CELL_WIDTH - Static variable in class loci.formats.tiff.IFD

cellIterator() - Method in class loci.poi.hssf.usermodel.HSSFRow

CellomicsReader - Class in loci.formats.in

Reader for Cellomics C01 files.

CellomicsReader() - Constructor for class loci.formats.in.CellomicsReader

Constructs a new Cellomics reader.

CellReference - Class in loci.poi.hssf.util

CellReference(String) - Constructor for class loci.poi.hssf.util.CellReference

CellReference(int, int) - Constructor for class loci.poi.hssf.util.CellReference

CellReference(int, int, boolean, boolean) - Constructor for class loci.poi.hssf.util.CellReference

cells - Variable in class loci.poi.hssf.model.Sheet

CellSensReader - Class in loci.formats.in

CellSensReader is the file format reader for cellSens .vsi files.

CellSensReader() - Constructor for class loci.formats.in.CellSensReader

Constructs a new cellSens reader.

CellValueRecordInterface - Interface in loci.poi.hssf.record

The cell value record interface is implemented by all classes of type Record that contain cell values.

CellVoyagerReader - Class in loci.formats.in

A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope ( http://www.yokogawa.com/scanner/products/cv1000e.htm).

CellVoyagerReader() - Constructor for class loci.formats.in.CellVoyagerReader

CellWorxReader - Class in loci.formats.in

CellWorxReader is the file format reader for CellWorx .pnl files.

CellWorxReader() - Constructor for class loci.formats.in.CellWorxReader

Constructs a new CellWorx reader.

CENTER - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

CENTER_SELECTION - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

CENTERED_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy

cepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

certain - Variable in class loci.formats.AxisGuesser

Whether the guesser is confident that all axis types are correct.

CF_BITMAP - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Bitmap

CF_DIB - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Device Independent Bitmap

CF_ENHMETAFILE - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Enhanced Windows metafile format

CF_METAFILEPICT - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Windows metafile format.

CFA_PATTERN - Static variable in class loci.formats.tiff.IFD

cfdHF - Variable in class loci.formats.in.SDTInfo

cfdLH - Variable in class loci.formats.in.SDTInfo

cfdLL - Variable in class loci.formats.in.SDTInfo

cfdZC - Variable in class loci.formats.in.SDTInfo

CFG_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

CFG_SUFFIX - Static variable in class loci.formats.in.PrairieReader

CFTAG_FMTID - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - Format ID

CFTAG_MACINTOSH - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - Macintosh clipboard format

CFTAG_NODATA - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - No Data

CFTAG_WINDOWS - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - Windows clipboard format

chan - Variable in class loci.formats.in.SDTInfo

Routing channel number.

changedUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets

changeName(Property, String) - Method in class loci.poi.poifs.property.DirectoryProperty

Change a Property's name

changeOutputFile(String) - Method in class loci.formats.FormatWriter

changeOutputFile(String) - Method in interface loci.formats.IFormatWriter

Switch the output file for the current dataset.

changeOutputFile(String) - Method in class loci.formats.ImageWriter

changeOutputFile(String) - Method in class loci.formats.WriterWrapper

chanMax - Variable in class loci.formats.MinMaxCalculator

Max values for each channel.

chanMin - Variable in class loci.formats.MinMaxCalculator

Min values for each channel.

CHANNEL - Static variable in class loci.formats.FormatTools

Identifies the Channel dimensional type, representing a generic channel dimension.

channel - Variable in class ome.scifio.io.NIOFileHandle

The file channel backed by the random access file.

channel - Variable in class ome.scifio.io.NIOInputStream

The file channel backed by the random access file.

Channel - Class in ome.xml.model

Channel() - Constructor for class ome.xml.model.Channel

Default constructor.

Channel(Element, OMEModel) - Constructor for class ome.xml.model.Channel

Constructs Channel recursively from an XML DOM tree.

Channel(Channel) - Constructor for class ome.xml.model.Channel

Copy constructor.

CHANNEL_DEFINITION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CHANNEL_NAME - Static variable in class loci.formats.FormatTools

CHANNEL_NUM - Static variable in class loci.formats.FormatTools

channelColors - Variable in class loci.formats.in.BaseZeissReader

ChannelDefinitionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is designed to represent a Channel Definition Box of JPEG JP2 file format.

ChannelDefinitionBox(ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided ColorModel.

ChannelDefinitionBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided content in byte array.

ChannelDefinitionBox(short[], short[], short[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided channel definitions.

ChannelDefinitionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided org.w3c.dom.Node.

ChannelFiller - Class in loci.formats

For indexed color data representing true color, factors out the indices, replacing them with the color table values directly.

ChannelFiller() - Constructor for class loci.formats.ChannelFiller

Constructs a ChannelFiller around a new image reader.

ChannelFiller(IFormatReader) - Constructor for class loci.formats.ChannelFiller

Constructs a ChannelFiller with a given reader.

ChannelImageInputStreamSpi - Class in com.sun.media.imageioimpl.stream

ChannelImageInputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi

ChannelImageOutputStreamSpi - Class in com.sun.media.imageioimpl.stream

ChannelImageOutputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi

channelIndices - Variable in class loci.formats.in.BaseZeissReader

ChannelMerger - Class in loci.formats

Logic to automatically merge channels in a file.

ChannelMerger() - Constructor for class loci.formats.ChannelMerger

Constructs a ChannelMerger around a new image reader.

ChannelMerger(IFormatReader) - Constructor for class loci.formats.ChannelMerger

Constructs a ChannelMerger with the given reader.

channelName - Variable in class loci.formats.in.BaseZeissReader

channelName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

ChannelRef - Class in ome.xml.model

ChannelRef() - Constructor for class ome.xml.model.ChannelRef

Default constructor.

ChannelRef(Element, OMEModel) - Constructor for class ome.xml.model.ChannelRef

Constructs ChannelRef recursively from an XML DOM tree.

ChannelRef(ChannelRef) - Constructor for class ome.xml.model.ChannelRef

Copy constructor.

channels - Variable in class loci.formats.codec.CodecOptions

Number of channels.

channels - Variable in class loci.formats.in.SDTInfo

channels - Variable in class loci.formats.in.SDTReader

Number of spectral channels.

ChannelSeparator - Class in loci.formats

Logic to automatically separate the channels in a file.

ChannelSeparator() - Constructor for class loci.formats.ChannelSeparator

Constructs a ChannelSeparator around a new image reader.

ChannelSeparator(IFormatReader) - Constructor for class loci.formats.ChannelSeparator

Constructs a ChannelSeparator with the given reader.

chanStore - Variable in class loci.formats.in.SDTReader

characterCellHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

characterCellWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

characters(char[], int, int) - Method in class loci.formats.in.FlexReader.FlexHandler

characters(char[], int, int) - Method in class loci.formats.in.ZeissTIFFHandler

ChartFormatRecord - Class in loci.poi.hssf.record

Class ChartFormatRecord

ChartFormatRecord() - Constructor for class loci.poi.hssf.record.ChartFormatRecord

ChartFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartFormatRecord

Constructs a ChartFormatRecord record and sets its fields appropriately.

ChartRecord - Class in loci.poi.hssf.record

The chart record is used to define the location and size of a chart.

ChartRecord() - Constructor for class loci.poi.hssf.record.ChartRecord

ChartRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartRecord

Constructs a Chart record and sets its fields appropriately.

check(int) - Method in class loci.poi.util.CommonsLogger

Check if a logger is enabled to log at the specified level

check(int) - Method in class loci.poi.util.NullLogger

Check if a logger is enabled to log at the specified level

check(int) - Method in class loci.poi.util.POILogger

Check if a logger is enabled to log at the specified level

check(int) - Method in class loci.poi.util.SystemOutLogger

Check if a logger is enabled to log at the specified level

checkBufferSize(IFormatReader, int) - Static method in class loci.formats.FormatTools

checkBufferSize(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools

Checks that the given buffer size is large enough to hold a w * h image as returned by the given reader.

checkClass(String) - Static method in class loci.plugins.util.LibraryChecker

Checks whether the given class is available.

checkClassDependency(Class<? extends Object>) - Method in class loci.common.services.AbstractService

Checks a given class dependency at runtime to ensure that a given class will be available.

checkClassDependency(Class<? extends Object>) - Method in class loci.formats.services.WlzServiceImpl

checkDimsLoc(Record, int) - Method in class loci.poi.hssf.model.Sheet

in the event the record is a dimensions record, resets both the loc index and dimsloc index

checkExternSheet(int) - Method in class loci.poi.hssf.model.Workbook

returns the extern sheet number for specific sheet number , if this sheet doesn't exist in extern sheet , add it

checkHeader() - Method in class loci.formats.tiff.TiffParser

Checks the TIFF header.

checkImageJ() - Static method in class loci.plugins.util.LibraryChecker

Checks whether ImageJ is new enough for the LOCI plugins.

checkImageJ(String, String) - Static method in class loci.plugins.util.LibraryChecker

Returns true the current ImageJ version is greater than or equal to the specified version.

checkImageJ(String, String, String) - Static method in class loci.plugins.util.LibraryChecker

Returns true the current ImageJ version is greater than or equal to the specified version.

checkJava() - Static method in class loci.plugins.util.LibraryChecker

Checks for a new enough version of the Java Runtime Environment.

checkKey(String, String) - Method in class loci.plugins.in.ImporterOptions

Tests whether the given boolean key is set in the specified options.

checkLatest(String, String) - Static method in class loci.plugins.config.InstallWizard

checkLibrary(LibraryChecker.Library, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker

Checks for a required library.

checkLibrary(String, String, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker

Checks whether the given class is available; if not, adds the specified JAR file name to the hash set (presumably to report it missing to the user).

checkMarkerLength(DataInputStream, String) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Checks that the marker segment length is correct.

checkMissing(HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker

Reports missing libraries in the given hash set to the user.

checkObsoleteOptions() - Method in class loci.plugins.in.ImporterOptions

Handles obsolete macro keys, for backward compatibility.

checkParams(int, byte[], int, int, int, int) - Method in class loci.formats.FormatWriter

Ensure that the arguments that are being passed to saveBytes(...) are valid.

checkPlaneNumber(IFormatReader, int) - Static method in class loci.formats.FormatTools

Checks that the given plane number is valid for the given reader.

checkPlaneParameters(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Convenience method for checking that the plane number, tile size and buffer sizes are all valid for the given reader.

checkPredTerm() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Checks for past errors in the decoding process using the predictable error resilient termination.

checkQTLibrary() - Method in class loci.formats.gui.LegacyQTTools

Checks whether QTJava is available, throwing an exception if not.

checkReadParamBandSettingsWrapper(ImageReadParam, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Wrapper for the protected method checkReadParamBandSettings.

checkRecordPosition() - Method in class loci.poi.hssf.record.RecordInputStream

checkSuffix(String, String) - Static method in class loci.formats.FormatHandler

Performs suffix matching for the given filename.

checkSuffix(String, String[]) - Static method in class loci.formats.FormatHandler

Performs suffix matching for the given filename.

checkTargetErrors() - Method in class jj2000.j2k.util.ThreadPool

Checks that no error or runtime exception in any target have occurred so far.

checkTileSize(IFormatReader, int, int, int, int) - Static method in class loci.formats.FormatTools

Checks that the given tile size is valid for the given reader.

checkValidId(String) - Static method in class loci.common.Location

Checks that the given id points at a valid data stream.

checkValidId(String) - Static method in class ome.scifio.io.Location

Checks that the given id points at a valid data stream.

Child - Interface in loci.poi.poifs.property

This interface defines methods for finding and setting sibling Property instances

childCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

chksum - Variable in class loci.formats.in.SDTInfo

CI_SERVER - Static variable in class loci.formats.UpgradeChecker

Location of the OME continuous integration server.

cIndex - Variable in class loci.formats.in.BaseZeissReader

cIndex - Variable in class loci.plugins.util.DataBrowser

CLASS_ARRAY - Static variable in class loci.poi.hssf.record.formula.Ptg

CLASS_REF - Static variable in class loci.poi.hssf.record.formula.Ptg

CLASS_VALUE - Static variable in class loci.poi.hssf.record.formula.Ptg

ClassID - Class in loci.poi.hpsf

Represents a class ID (16 bytes).

ClassID(byte[], int) - Constructor for class loci.poi.hpsf.ClassID

Creates a ClassID and reads its value from a byte array.

ClassID() - Constructor for class loci.poi.hpsf.ClassID

Creates a ClassID and initializes its value with 0x00 bytes.

classID - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's "classID" field.

ClassList<T> - Class in loci.formats

ClassList is a list of classes for use with ImageReader or ImageWriter, parsed from a configuration file such as readers.txt or writers.txt.

ClassList(Class<T>) - Constructor for class loci.formats.ClassList

Constructs a list of classes, initially empty.

ClassList(String, Class<T>) - Constructor for class loci.formats.ClassList

Constructs a list of classes from the given configuration file.

ClassList(String, Class<T>, Class<?>) - Constructor for class loci.formats.ClassList

Constructs a list of classes from the given configuration file.

CLEAN_FAX_DATA_ERRORS_CORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

A value to be used with the "CleanFaxData" tag.

CLEAN_FAX_DATA_ERRORS_UNCORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

A value to be used with the "CleanFaxData" tag.

CLEAN_FAX_DATA_NO_ERRORS - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

A value to be used with the "CleanFaxData" tag.

cleanStaleCacheEntries() - Static method in class loci.common.Location

Remove any cached directory listings that have expired.

cleanStaleCacheEntries() - Static method in class ome.scifio.io.Location

Remove any cached directory listings that have expired.

cleanup() - Method in class loci.formats.Memoizer

cleanup() - Method in class loci.tests.testng.SubResolutionTest

clear() - Method in class loci.common.IniList

clear() - Method in class loci.common.IniTable

clear() - Method in class loci.formats.codec.ByteVector

clear() - Method in class loci.legacy.adapter.AbstractLegacyAdapter

clear() - Method in interface loci.legacy.adapter.LegacyAdapter

Resets any mappings in this adapter.

clear() - Method in class loci.poi.hpsf.MutableSection

Removes all properties from the section including 0 (dictionary) and 1 (codepage).

clear() - Method in class loci.poi.hssf.record.EscherAggregate

clear() - Method in class loci.poi.util.BinaryTree

Removes all mappings from this map

clear(int) - Method in class loci.poi.util.BitField

Clear the bits.

clear() - Method in class loci.poi.util.DoubleList

Removes all of the elements from this list.

clear() - Method in class loci.poi.util.IntList

Removes all of the elements from this list.

clear() - Method in class loci.poi.util.ShortList

Removes all of the elements from this list.

clearByte(byte) - Method in class loci.poi.util.BitField

Clear the bits.

clearDestImage() - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

clearDirectoryListingsCache() - Static method in class loci.common.Location

Clear the directory listings cache.

clearDirectoryListingsCache() - Static method in class ome.scifio.io.Location

Clear the directory listings cache.

clearEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

clearFormatting() - Method in class loci.poi.hssf.record.UnicodeString

clearFormatting() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Removes any formatting that may have been applied to the string.

clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

clearSections() - Method in class loci.poi.hpsf.MutablePropertySet

Removes all sections from this property set.

clearSections() - Method in class loci.poi.hpsf.SpecialPropertySet

clearSeries() - Method in class loci.plugins.in.ImporterOptions

clearShort(short) - Method in class loci.poi.util.BitField

Clear the bits.

clearSubRecords() - Method in class loci.poi.hssf.record.ObjRecord

ClearTable(int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

clearTargetErrors() - Method in class jj2000.j2k.util.ThreadPool

Clears the current target error conditions, if any.

cLengths - Variable in class loci.formats.CoreMetadata

Deprecated.

use CoreMetadata.moduloC instead

cLengths - Variable in class loci.plugins.util.DataBrowser

clip(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

clip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

clone() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Clones the directory and all the fields contained therein.

clone() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

clone() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

clone() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

clone() - Method in class jj2000.j2k.ModuleSpec

clone() - Method in class loci.common.IniList

clone() - Method in class loci.common.IniTable

clone() - Method in class loci.formats.CoreMetadata

clone(IFormatReader, int) - Method in class loci.formats.CoreMetadata

clone() - Method in class loci.formats.SwappableMetadata

clone(IFormatReader, int) - Method in class loci.formats.SwappableMetadata

clone() - Method in class loci.poi.ddf.EscherRecord

Escher records may need to be clonable in the future.

clone() - Method in class loci.poi.ddf.EscherTextboxRecord

clone() - Method in class loci.poi.ddf.UnknownEscherRecord

clone() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

clone() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Performs a deep clone of the record

clone() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

clone() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Performs a deep clone of the record

clone() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Performs a deep clone of the record

clone() - Method in class loci.poi.hssf.record.AreaFormatRecord

clone() - Method in class loci.poi.hssf.record.AreaRecord

clone() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

clone() - Method in class loci.poi.hssf.record.AxisOptionsRecord

clone() - Method in class loci.poi.hssf.record.AxisParentRecord

clone() - Method in class loci.poi.hssf.record.AxisRecord

clone() - Method in class loci.poi.hssf.record.AxisUsedRecord

clone() - Method in class loci.poi.hssf.record.BarRecord

clone() - Method in class loci.poi.hssf.record.BlankRecord

clone() - Method in class loci.poi.hssf.record.BOFRecord

clone() - Method in class loci.poi.hssf.record.BoolErrRecord

clone() - Method in class loci.poi.hssf.record.BottomMarginRecord

clone() - Method in class loci.poi.hssf.record.CalcCountRecord

clone() - Method in class loci.poi.hssf.record.CalcModeRecord

clone() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

clone() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

clone() - Method in class loci.poi.hssf.record.ChartRecord

clone() - Method in class loci.poi.hssf.record.ColumnInfoRecord

clone() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

clone() - Method in class loci.poi.hssf.record.ContinueRecord

Clone this record.

clone() - Method in class loci.poi.hssf.record.DataFormatRecord

clone() - Method in class loci.poi.hssf.record.DatRecord

clone() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

clone() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

clone() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

clone() - Method in class loci.poi.hssf.record.DeltaRecord

clone() - Method in class loci.poi.hssf.record.DimensionsRecord

clone() - Method in class loci.poi.hssf.record.EndSubRecord

clone() - Method in class loci.poi.hssf.record.EOFRecord

clone() - Method in class loci.poi.hssf.record.FilePassRecord

clone() - Method in class loci.poi.hssf.record.FileSharingRecord

Clone this record.

clone() - Method in class loci.poi.hssf.record.FontBasisRecord

clone() - Method in class loci.poi.hssf.record.FontIndexRecord

clone() - Method in class loci.poi.hssf.record.FooterRecord

clone() - Method in class loci.poi.hssf.record.formula.AddPtg

clone() - Method in class loci.poi.hssf.record.formula.Area3DPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaAPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaErrPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaNAPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaNPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaNVPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaVPtg

clone() - Method in class loci.poi.hssf.record.formula.ArrayPtg

clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgA

clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgV

clone() - Method in class loci.poi.hssf.record.formula.AttrPtg

clone() - Method in class loci.poi.hssf.record.formula.BoolPtg

clone() - Method in class loci.poi.hssf.record.formula.ConcatPtg

clone() - Method in class loci.poi.hssf.record.formula.DividePtg

clone() - Method in class loci.poi.hssf.record.formula.EqualPtg

clone() - Method in class loci.poi.hssf.record.formula.ErrPtg

clone() - Method in class loci.poi.hssf.record.formula.ExpPtg

clone() - Method in class loci.poi.hssf.record.formula.FuncPtg

clone() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

clone() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

clone() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Implementation of clone method from Object

clone() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

clone() - Method in class loci.poi.hssf.record.formula.IntPtg

clone() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

clone() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Implementation of clone method from Object

clone() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

clone() - Method in class loci.poi.hssf.record.formula.MemErrPtg

clone() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

clone() - Method in class loci.poi.hssf.record.formula.MissingArgPtg

clone() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

clone() - Method in class loci.poi.hssf.record.formula.NamePtg

clone() - Method in class loci.poi.hssf.record.formula.NameXPtg

clone() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

clone() - Method in class loci.poi.hssf.record.formula.NumberPtg

clone() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

clone() - Method in class loci.poi.hssf.record.formula.PercentPtg

clone() - Method in class loci.poi.hssf.record.formula.PowerPtg

clone() - Method in class loci.poi.hssf.record.formula.Ptg

clone() - Method in class loci.poi.hssf.record.formula.RangePtg

clone() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

clone() - Method in class loci.poi.hssf.record.formula.RefAPtg

clone() - Method in class loci.poi.hssf.record.formula.ReferencePtg

clone() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

clone() - Method in class loci.poi.hssf.record.formula.RefNAPtg

clone() - Method in class loci.poi.hssf.record.formula.RefNPtg

clone() - Method in class loci.poi.hssf.record.formula.RefNVPtg

clone() - Method in class loci.poi.hssf.record.formula.RefVPtg

clone() - Method in class loci.poi.hssf.record.formula.StringPtg

clone() - Method in class loci.poi.hssf.record.formula.SubtractPtg

clone() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

clone() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

clone() - Method in class loci.poi.hssf.record.formula.UnionPtg

clone() - Method in class loci.poi.hssf.record.formula.UnknownPtg

clone() - Method in class loci.poi.hssf.record.FormulaRecord

clone() - Method in class loci.poi.hssf.record.FrameRecord

clone() - Method in class loci.poi.hssf.record.GridsetRecord

clone() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

clone() - Method in class loci.poi.hssf.record.GutsRecord

clone() - Method in class loci.poi.hssf.record.HCenterRecord

clone() - Method in class loci.poi.hssf.record.HeaderRecord

clone() - Method in class loci.poi.hssf.record.IndexRecord

clone() - Method in class loci.poi.hssf.record.IterationRecord

clone() - Method in class loci.poi.hssf.record.LabelRecord

clone() - Method in class loci.poi.hssf.record.LabelSSTRecord

clone() - Method in class loci.poi.hssf.record.LeftMarginRecord

clone() - Method in class loci.poi.hssf.record.LegendRecord

clone() - Method in class loci.poi.hssf.record.LineFormatRecord

clone() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

clone() - Method in class loci.poi.hssf.record.LinkedDataRecord

clone() - Method in class loci.poi.hssf.record.MergeCellsRecord

clone() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

clone() - Method in class loci.poi.hssf.record.NumberRecord

clone() - Method in class loci.poi.hssf.record.ObjectLinkRecord

clone() - Method in class loci.poi.hssf.record.ObjectProtectRecord

clone() - Method in class loci.poi.hssf.record.ObjRecord

clone() - Method in class loci.poi.hssf.record.PageBreakRecord

clone() - Method in class loci.poi.hssf.record.PaneRecord

clone() - Method in class loci.poi.hssf.record.PasswordRecord

Clone this record.

clone() - Method in class loci.poi.hssf.record.PlotAreaRecord

clone() - Method in class loci.poi.hssf.record.PlotGrowthRecord

clone() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

clone() - Method in class loci.poi.hssf.record.PrintHeadersRecord

clone() - Method in class loci.poi.hssf.record.PrintSetupRecord

clone() - Method in class loci.poi.hssf.record.ProtectRecord

clone() - Method in class loci.poi.hssf.record.Record

clone() - Method in class loci.poi.hssf.record.RefModeRecord

clone() - Method in class loci.poi.hssf.record.RightMarginRecord

clone() - Method in class loci.poi.hssf.record.RKRecord

clone() - Method in class loci.poi.hssf.record.RowRecord

clone() - Method in class loci.poi.hssf.record.SaveRecalcRecord

clone() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

clone() - Method in class loci.poi.hssf.record.SCLRecord

clone() - Method in class loci.poi.hssf.record.SelectionRecord

clone() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

clone() - Method in class loci.poi.hssf.record.SeriesIndexRecord

clone() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

clone() - Method in class loci.poi.hssf.record.SeriesListRecord

clone() - Method in class loci.poi.hssf.record.SeriesRecord

clone() - Method in class loci.poi.hssf.record.SeriesTextRecord

clone() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

clone() - Method in class loci.poi.hssf.record.SharedFormulaRecord

clone() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

clone() - Method in class loci.poi.hssf.record.StringRecord

clone() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

clone() - Method in class loci.poi.hssf.record.TextRecord

clone() - Method in class loci.poi.hssf.record.TickRecord

clone() - Method in class loci.poi.hssf.record.TopMarginRecord

clone() - Method in class loci.poi.hssf.record.UnicodeString

clone() - Method in class loci.poi.hssf.record.UnitsRecord

clone() - Method in class loci.poi.hssf.record.UnknownRecord

Unlike the other Record.clone methods this is a shallow clone

clone() - Method in class loci.poi.hssf.record.ValueRangeRecord

clone() - Method in class loci.poi.hssf.record.VCenterRecord

clone() - Method in class loci.poi.hssf.record.WindowTwoRecord

clone() - Method in class loci.poi.hssf.record.WSBoolRecord

clone() - Method in class mdbtools.libmdb.MdbColumn

clone() - Method in class mdbtools.libmdb.MdbSarg

cloneNode(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

cloneSheet() - Method in class loci.poi.hssf.model.Sheet

Clones the low level records of this sheet and returns the new sheet instance.

cloneSheet(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create an HSSFSheet from an existing sheet in the HSSFWorkbook.

close() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

Invokes the superclass method and sets the internal reference to the source FileChannel to null.

close() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Invokes the superclass method, writes any unwritten data, and sets the internal reference to the source FileChannel to null.

close() - Method in class com.sun.media.imageio.stream.RawImageInputStream

close() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

close() - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter

close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

close() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Closes the underlying resource (file, stream, network connection, etc.).

close() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Writes the EOC marker and closes the underlying stream.

close() - Method in class jj2000.j2k.image.input.ImgReader

Closes the underlying file or network connection from where the image data is being read.

close() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Closes the underlying RandomAccessFile from where the image data is being read.

close() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Closes the buffered random access file

close() - Method in interface jj2000.j2k.io.RandomAccessIO

Closes the I/O stream.

close() - Method in class jj2000.j2k.util.ISRandomAccessIO

Closes this object for reading as well as the wrapped InputStream, if not already closed.

close() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper

close() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper

close() - Method in class loci.common.ByteArrayHandle

close() - Method in class loci.common.CBZip2InputStream

close() - Method in class loci.common.FileHandle

close() - Method in interface loci.common.IRandomAccess

Closes this random access stream and releases any system resources associated with the stream.

close() - Method in class loci.common.NIOFileHandle

close() - Method in class loci.common.NIOInputStream

Closes the streams.

close() - Method in class loci.common.RandomAccessInputStream

Closes the streams.

close() - Method in class loci.common.RandomAccessOutputStream

close() - Method in class loci.common.StreamHandle

close() - Method in class loci.common.ZipHandle

close(boolean) - Method in class loci.formats.ChannelSeparator

close() - Method in class loci.formats.codec.JPEGTileDecoder

close(boolean) - Method in class loci.formats.DelegateReader

close() - Method in class loci.formats.FileStitcher

close(boolean) - Method in class loci.formats.FileStitcher

close(boolean) - Method in class loci.formats.FormatReader

close() - Method in class loci.formats.FormatReader

close() - Method in class loci.formats.FormatWriter

close() - Method in class loci.formats.gui.BufferedImageWriter

close() - Method in class loci.formats.gui.PreviewPane

Closes the underlying image reader.

close(boolean) - Method in interface loci.formats.IFormatReader

Closes the currently open file.

close(boolean) - Method in class loci.formats.ImageReader

close() - Method in class loci.formats.ImageReader

close() - Method in class loci.formats.ImageWriter

close(boolean) - Method in class loci.formats.in.AFIReader

close(boolean) - Method in class loci.formats.in.AIMReader

close(boolean) - Method in class loci.formats.in.AliconaReader

close(boolean) - Method in class loci.formats.in.AnalyzeReader

close(boolean) - Method in class loci.formats.in.APLReader

close(boolean) - Method in class loci.formats.in.APNGReader

close(boolean) - Method in class loci.formats.in.AVIReader

close(boolean) - Method in class loci.formats.in.BaseZeissReader

close(boolean) - Method in class loci.formats.in.BDReader

close(boolean) - Method in class loci.formats.in.BioRadReader

close(boolean) - Method in class loci.formats.in.BioRadSCNReader

close(boolean) - Method in class loci.formats.in.BMPReader

close(boolean) - Method in class loci.formats.in.BrukerReader

close(boolean) - Method in class loci.formats.in.BurleighReader

close(boolean) - Method in class loci.formats.in.CanonRawReader

close(boolean) - Method in class loci.formats.in.CellomicsReader

close(boolean) - Method in class loci.formats.in.CellSensReader

close(boolean) - Method in class loci.formats.in.CellWorxReader

close(boolean) - Method in class loci.formats.in.DeltavisionReader

close(boolean) - Method in class loci.formats.in.DicomReader

close(boolean) - Method in class loci.formats.in.DNGReader

close(boolean) - Method in class loci.formats.in.EPSReader

close(boolean) - Method in class loci.formats.in.FakeReader

close(boolean) - Method in class loci.formats.in.FEIReader

close(boolean) - Method in class loci.formats.in.FEITiffReader

close(boolean) - Method in class loci.formats.in.FitsReader

close(boolean) - Method in class loci.formats.in.FlexReader

close(boolean) - Method in class loci.formats.in.FluoviewReader

close(boolean) - Method in class loci.formats.in.FujiReader

close(boolean) - Method in class loci.formats.in.FV1000Reader

close(boolean) - Method in class loci.formats.in.GatanDM2Reader

close(boolean) - Method in class loci.formats.in.GatanReader

close(boolean) - Method in class loci.formats.in.GIFReader

close(boolean) - Method in class loci.formats.in.HamamatsuVMSReader

close(boolean) - Method in class loci.formats.in.HitachiReader

close(boolean) - Method in class loci.formats.in.HRDGDFReader

close(boolean) - Method in class loci.formats.in.ICSReader

close(boolean) - Method in class loci.formats.in.ImaconReader

close(boolean) - Method in class loci.formats.in.ImageIOReader

close(boolean) - Method in class loci.formats.in.ImagicReader

close(boolean) - Method in class loci.formats.in.ImarisHDFReader

close(boolean) - Method in class loci.formats.in.ImarisReader

close(boolean) - Method in class loci.formats.in.IMODReader

close(boolean) - Method in class loci.formats.in.ImprovisionTiffReader

close(boolean) - Method in class loci.formats.in.ImspectorReader

close(boolean) - Method in class loci.formats.in.InCell3000Reader

close(boolean) - Method in class loci.formats.in.InCellReader

close(boolean) - Method in class loci.formats.in.InveonReader

close(boolean) - Method in class loci.formats.in.IPLabReader

close(boolean) - Method in class loci.formats.in.IPWReader

close(boolean) - Method in class loci.formats.in.IvisionReader

close(boolean) - Method in class loci.formats.in.JEOLReader

close(boolean) - Method in class loci.formats.in.JPEG2000Reader

close(boolean) - Method in class loci.formats.in.JPEGReader

close(boolean) - Method in class loci.formats.in.JPXReader

close(boolean) - Method in class loci.formats.in.KhorosReader

close(boolean) - Method in class loci.formats.in.KodakReader

close(boolean) - Method in class loci.formats.in.L2DReader

close(boolean) - Method in class loci.formats.in.LegacyQTReader

close(boolean) - Method in class loci.formats.in.LeicaReader

close(boolean) - Method in class loci.formats.in.LeicaSCNReader

close(boolean) - Method in class loci.formats.in.LiFlimReader

close(boolean) - Method in class loci.formats.in.LIFReader

close(boolean) - Method in class loci.formats.in.LIMReader

close(boolean) - Method in class loci.formats.in.MetamorphReader

close(boolean) - Method in class loci.formats.in.MIASReader

close(boolean) - Method in class loci.formats.in.MicromanagerReader

close(boolean) - Method in class loci.formats.in.MINCReader

close(boolean) - Method in class loci.formats.in.MinimalTiffReader

close(boolean) - Method in class loci.formats.in.MNGReader

close(boolean) - Method in class loci.formats.in.MolecularImagingReader

close(boolean) - Method in class loci.formats.in.MRCReader

close(boolean) - Method in class loci.formats.in.MRWReader

close(boolean) - Method in class loci.formats.in.NAFReader

close(boolean) - Method in class loci.formats.in.NativeND2Reader

close(boolean) - Method in class loci.formats.in.NativeQTReader

close(boolean) - Method in class loci.formats.in.NDPIReader

close(boolean) - Method in class loci.formats.in.NDPISReader

close(boolean) - Method in class loci.formats.in.NiftiReader

close(boolean) - Method in class loci.formats.in.NikonElementsTiffReader

close(boolean) - Method in class loci.formats.in.NikonReader

close(boolean) - Method in class loci.formats.in.NikonTiffReader

close(boolean) - Method in class loci.formats.in.NRRDReader

close(boolean) - Method in class loci.formats.in.OBFReader

close(boolean) - Method in class loci.formats.in.OMETiffReader

close(boolean) - Method in class loci.formats.in.OMEXMLReader

close(boolean) - Method in class loci.formats.in.OpenlabRawReader

close(boolean) - Method in class loci.formats.in.OpenlabReader

close(boolean) - Method in class loci.formats.in.OperettaReader

close(boolean) - Method in class loci.formats.in.PCIReader

close(boolean) - Method in class loci.formats.in.PCORAWReader

close(boolean) - Method in class loci.formats.in.PCXReader

close(boolean) - Method in class loci.formats.in.PDSReader

close(boolean) - Method in class loci.formats.in.PerkinElmerReader

close(boolean) - Method in class loci.formats.in.PGMReader

close(boolean) - Method in class loci.formats.in.PhotoshopTiffReader

close(boolean) - Method in class loci.formats.in.PictReader

close(boolean) - Method in class loci.formats.in.PrairieReader

close(boolean) - Method in class loci.formats.in.PSDReader

close(boolean) - Method in class loci.formats.in.QuesantReader

close(boolean) - Method in class loci.formats.in.RHKReader

close(boolean) - Method in class loci.formats.in.SBIGReader

close(boolean) - Method in class loci.formats.in.ScanrReader

close(boolean) - Method in class loci.formats.in.ScreenReader

close(boolean) - Method in class loci.formats.in.SDTReader

close(boolean) - Method in class loci.formats.in.SIFReader

close(boolean) - Method in class loci.formats.in.SimplePCITiffReader

close(boolean) - Method in class loci.formats.in.SISReader

close(boolean) - Method in class loci.formats.in.SlidebookReader

close(boolean) - Method in class loci.formats.in.SlidebookTiffReader

close(boolean) - Method in class loci.formats.in.SpiderReader

close(boolean) - Method in class loci.formats.in.SVSReader

close(boolean) - Method in class loci.formats.in.TargaReader

close(boolean) - Method in class loci.formats.in.TCSReader

close(boolean) - Method in class loci.formats.in.TextReader

close(boolean) - Method in class loci.formats.in.TiffReader

close(boolean) - Method in class loci.formats.in.TileJPEGReader

close(boolean) - Method in class loci.formats.in.TillVisionReader

close(boolean) - Method in class loci.formats.in.TopometrixReader

close(boolean) - Method in class loci.formats.in.TrestleReader

close(boolean) - Method in class loci.formats.in.UBMReader

close(boolean) - Method in class loci.formats.in.UnisokuReader

close(boolean) - Method in class loci.formats.in.VarianFDFReader

close(boolean) - Method in class loci.formats.in.VisitechReader

close(boolean) - Method in class loci.formats.in.VolocityClippingReader

close(boolean) - Method in class loci.formats.in.VolocityReader

close(boolean) - Method in class loci.formats.in.WlzReader

close(boolean) - Method in class loci.formats.in.ZeissCZIReader

close(boolean) - Method in class loci.formats.in.ZeissLSMReader

close(boolean) - Method in class loci.formats.in.ZeissTIFFReader

close(boolean) - Method in class loci.formats.in.ZeissZVIReader

close(boolean) - Method in class loci.formats.in.ZipReader

close() - Method in class loci.formats.Memoizer

close(boolean) - Method in class loci.formats.Memoizer

close() - Method in interface loci.formats.Memoizer.Deser

close() - Method in class loci.formats.Memoizer.KryoDeser

close(boolean) - Method in class loci.formats.MinMaxCalculator

close() - Method in class loci.formats.out.APNGWriter

close() - Method in class loci.formats.out.AVIWriter

close() - Method in class loci.formats.out.ICSWriter

close() - Method in class loci.formats.out.JavaWriter

close() - Method in class loci.formats.out.LegacyQTWriter

close() - Method in class loci.formats.out.OMETiffWriter

close() - Method in class loci.formats.out.OMEXMLWriter

close() - Method in class loci.formats.out.QTWriter

close() - Method in class loci.formats.out.TiffWriter

close() - Method in class loci.formats.out.WlzWriter

close(boolean) - Method in class loci.formats.ReaderWrapper

close() - Method in class loci.formats.ReaderWrapper

close() - Method in interface loci.formats.services.JPEGTurboService

close() - Method in class loci.formats.services.JPEGTurboServiceImpl

close() - Method in interface loci.formats.services.MDBService

Close the currently initialized file.

close() - Method in class loci.formats.services.MDBServiceImpl

close() - Method in interface loci.formats.services.MetakitService

close() - Method in class loci.formats.services.MetakitServiceImpl

close() - Method in interface loci.formats.services.NetCDFService

Closes and resets the service.

close() - Method in class loci.formats.services.NetCDFServiceImpl

close() - Method in interface loci.formats.services.POIService

Close the current POI file system.

close() - Method in class loci.formats.services.POIServiceImpl

close() - Method in interface loci.formats.services.WlzService

Closes the file.

close() - Method in class loci.formats.services.WlzServiceImpl

close() - Method in class loci.formats.tiff.OnDemandLongArray

close() - Method in class loci.formats.WriterWrapper

close(boolean) - Method in class loci.ome.io.OMEReader

close() - Method in class loci.ome.io.OMEReader

close(boolean) - Method in class loci.ome.io.OmeroReader

close() - Method in class loci.ome.io.OMEWriter

close() - Method in class loci.plugins.config.TextAreaWriter

Closing a TextAreaWriter does nothing.

close() - Method in class loci.plugins.macro.LociFunctions

close() - Method in class loci.plugins.util.VirtualImagePlus

close() - Method in class loci.plugins.util.VirtualReader

close() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Closes this input stream and releases any system resources associated with the stream.

close() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Closes this output stream and releases any system resources associated with this stream.

close() - Method in class loci.poi.util.BlockingInputStream

close() - Method in class loci.tests.testng.FormatReaderTest

close() - Method in class mdbtools.examples.MemoryRandomAccess

close() - Method in class mdbtools.jdbc2.File

close() - Method in class mdbtools.libmdb.MdbFile

close() - Method in class mdbtools.libmdb.MdbHandle

close() - Method in interface mdbtools.publicapi.RandomAccess

close() - Method in class ome.metakit.MetakitReader

Close the reader and release any resources in use.

close() - Method in class ome.scifio.io.ByteArrayHandle

close() - Method in class ome.scifio.io.CBZip2InputStream

close() - Method in class ome.scifio.io.FileHandle

close() - Method in interface ome.scifio.io.IRandomAccess

Closes this random access stream and releases any system resources associated with the stream.

close() - Method in class ome.scifio.io.NIOFileHandle

close() - Method in class ome.scifio.io.NIOInputStream

Closes the streams.

close() - Method in class ome.scifio.io.RandomAccessInputStream

Closes the streams.

close() - Method in class ome.scifio.io.RandomAccessOutputStream

close() - Method in class ome.scifio.io.StreamHandle

close() - Method in class ome.scifio.io.ZipHandle

CLOSED_CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty

CLOSED_POLYGON - Static variable in class loci.poi.ddf.EscherShapePathProperty

closeFile() - Method in class loci.formats.tools.MakeDatasetStructureTable

Close the output file.

closeFileOnly() - Method in class loci.plugins.macro.LociFunctions

cm - Variable in class loci.formats.FormatWriter

Default color model.

COBOL - Static variable in class loci.common.DateTools

COBOL - Static variable in class ome.scifio.common.DateTools

COBOL_EPOCH - Static variable in class loci.common.DateTools

COBOL_EPOCH - Static variable in class ome.scifio.common.DateTools

coc - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the COC marker segments found in main and first tile-part header.

COC - Static variable in interface jj2000.j2k.codestream.Markers

Coding style component (COC): 0xFF53

cod - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the COD marker segments found in main and first tile-part header.

COD - Static variable in interface jj2000.j2k.codestream.Markers

Coding style default (COD): 0xFF52

codeBlockSize - Variable in class loci.formats.codec.JPEG2000CodecOptions

The maximum code-block size to use per tile-component as it would be provided to: J2KImageWriteParam.setCodeBlockSize(int[]) (WRITE).

Codec - Interface in loci.formats.codec

This class is an interface for any kind of compression or decompression.

codec - Variable in class loci.formats.out.LegacyQTWriter

The codec to use.

codec - Variable in class loci.formats.out.QTWriter

The codec to use.

CODEC_ANIMATION - Static variable in class loci.formats.out.QTWriter

Value indicating Animation codec.

CODEC_CINEPAK - Static variable in class loci.formats.out.QTWriter

Value indicating Cinepak codec.

CODEC_H_263 - Static variable in class loci.formats.out.QTWriter

Value indicating H.263 codec.

CODEC_MOTION_JPEG_B - Static variable in class loci.formats.out.QTWriter

Value indicating Motion JPEG-B codec.

CODEC_MPEG_4 - Static variable in class loci.formats.out.QTWriter

Value indicating MPEG-4 codec.

CODEC_RAW - Static variable in class loci.formats.out.QTWriter

Value indicating Raw codec.

CODEC_SORENSON - Static variable in class loci.formats.out.QTWriter

Value indicating Sorenson codec.

CODEC_SORENSON_3 - Static variable in class loci.formats.out.QTWriter

Value indicating Sorenson 3 codec.

CodecOptions - Class in loci.formats.codec

Options for compressing and decompressing data.

CodecOptions() - Constructor for class loci.formats.codec.CodecOptions

Construct a new CodecOptions.

CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.CodecOptions

Construct a new CodecOptions using the given CodecOptions.

CodedCBlk - Class in jj2000.j2k.entropy

This is the generic class to store coded (compressed) code-block.

CodedCBlk() - Constructor for class jj2000.j2k.entropy.CodedCBlk

Creates a new CodedCBlk object wit the default values and without allocating any space for its members.

CodedCBlk(int, int, int, byte[]) - Constructor for class jj2000.j2k.entropy.CodedCBlk

Creates a new CodedCBlk object with the specified values.

CodedCBlkDataSrcDec - Interface in jj2000.j2k.entropy.decoder

This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.

CodedCBlkDataSrcEnc - Interface in jj2000.j2k.entropy.encoder

This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.

CodedEnum - Interface in loci.common.enumeration

A legacy wrapper interface for ome.scifio.enumeration.CodedEnum Source code: Trac, Gitweb

CodedEnum - Interface in ome.scifio.enumeration

Enumeration which is coded.

CodedEnumAdapter - Class in loci.common.adapter

As interfaces can not contain implementation, this class manages interface-level delegation between CodedEnum and CodedEnum

CodedEnumAdapter() - Constructor for class loci.common.adapter.CodedEnumAdapter

CodedEnumAdapter.LegacyWrapper - Class in loci.common.adapter

This class can be used to wrap loci.common.enumeration.CodedEnum objects and be passed to API expecting an ome.scifio.enumeration.CodedEnum object.

CodedEnumAdapter.LegacyWrapper(CodedEnum) - Constructor for class loci.common.adapter.CodedEnumAdapter.LegacyWrapper

CodedEnumAdapter.ModernWrapper - Class in loci.common.adapter

This class can be used to wrap ome.scifio.enumeration.CodedEnum objects and be passed to API expecting a loci.common.enumeration.CodedEnum object.

CodedEnumAdapter.ModernWrapper(CodedEnum) - Constructor for class loci.common.adapter.CodedEnumAdapter.ModernWrapper

CODEPAGE - Static variable in class loci.poi.hssf.record.CodepageRecord

the likely correct value for CODEPAGE (at least for US versions).

CODEPAGE - Static variable in class loci.poi.hssf.record.InterfaceHdrRecord

suggested (and probably correct) default

CodepageRecord - Class in loci.poi.hssf.record

Title: Codepage Record

CodepageRecord() - Constructor for class loci.poi.hssf.record.CodepageRecord

CodepageRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CodepageRecord

Constructs a CodepageRecord and sets its fields appropriately

codepageToEncoding(int) - Static method in class loci.poi.hpsf.VariantSupport

Turns a codepage number into the equivalent character encoding's name.

CodestreamManipulator - Class in jj2000.j2k.util

This class takes a legal JPEG 2000 codestream and performs some manipulation on it.

CodestreamManipulator(File, int, int, boolean, boolean, boolean, boolean) - Constructor for class jj2000.j2k.util.CodestreamManipulator

Instantiates a codestream manipulator..

CodestreamWriter - Class in jj2000.j2k.codestream.writer

This is the abstract class for writing to a bit stream.

CodestreamWriter(int) - Constructor for class jj2000.j2k.codestream.writer.CodestreamWriter

Allocates this object and initializes the maximum numner of bytes.

codeSymbol(int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This function performs the arithmetic encoding of one symbol.

codeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This function performs the arithmetic encoding of several symbols together.

col_fixed_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

col_from - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

upper right hand corner col

col_num - Variable in class mdbtools.libmdb.MdbColumn

col_num_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

col_prec - Variable in class mdbtools.libmdb.MdbColumn

col_scale - Variable in class mdbtools.libmdb.MdbColumn

col_size - Variable in class mdbtools.libmdb.MdbColumn

col_size_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

col_to - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

lower right hand corner col

col_type - Variable in class mdbtools.libmdb.MdbColumn

colBreaks - Variable in class loci.poi.hssf.model.Sheet

colCount - Variable in class loci.formats.in.BaseZeissReader

collapseColInfoRecords(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

collapseColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

collapseRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Color - Class in ome.xml.model.primitives

Primitive type that represents an RGBA color.

Color(Integer) - Constructor for class ome.xml.model.primitives.Color

Color(int, int, int, int) - Constructor for class ome.xml.model.primitives.Color

COLOR_MAP - Static variable in class loci.formats.tiff.IFD

COLOR_MODE_COLORIZED - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_COMPOSITE - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_CUSTOM - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_DEFAULT - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_GRAYSCALE - Static variable in class loci.plugins.in.ImporterOptions

COLOR_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

normal type of black color.

COLOR_RED - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Dark Red color

COLOR_SPACE - Static variable in class loci.formats.tiff.IFD

COLOR_SPACE_SRGB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ColorSpace" tag.

COLOR_SPACE_UNCALIBRATED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ColorSpace" tag.

colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

A TIFFColorConverter object describing the color space of the encoded pixel data, or null.

colorCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

ColorDialog - Class in loci.plugins.in

Bio-Formats Importer custom color chooser dialog box.

ColorDialog(ImportProcess) - Constructor for class loci.plugins.in.ColorDialog

Colorizer - Class in loci.plugins.in

Logic for colorizing images.

Colorizer(ImportProcess) - Constructor for class loci.plugins.in.Colorizer

colorMap - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the ColorMap tag.

colorModeChoice - Variable in class loci.plugins.in.MainDialog

colorModel - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The image's ColorModel.

colorModel - Variable in class loci.formats.codec.CodecOptions

Color model to use when constructing an image (WRITE).

colorResolution - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

colorsImportant - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

colorSpace - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

ColorSpecificationBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Color Specification Box of JPEG JP2 file format.

ColorSpecificationBox(byte, byte, byte, int, ICC_Profile) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates a ColorSpecificationBox from the provided data elements.

ColorSpecificationBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates a ColorSpecificationBox from the provided byte array.

ColorSpecificationBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Constructs a ColorSpecificationBox based on the provided org.w3c.dom.Node.

colorsUsed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

colorTableSizes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

COLOUR_SPECIFICATION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

colT - Variable in class loci.formats.in.SDTInfo

column - Variable in class loci.formats.tools.AmiraParameters

Column - Class in ome.metakit

Class representing a column in a Metakit database file.

Column(String) - Constructor for class ome.metakit.Column

Construct a new column from the given string representation.

ColumnComparator - Class in mdbtools.dbengine

Compare the values from a column in two rows

ColumnComparator() - Constructor for class mdbtools.dbengine.ColumnComparator

ColumnInfoRecord - Class in loci.poi.hssf.record

Title: ColumnInfo Record

ColumnInfoRecord() - Constructor for class loci.poi.hssf.record.ColumnInfoRecord

ColumnInfoRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ColumnInfoRecord

Constructs a ColumnInfo record and sets its fields appropriately

ColumnInfoRecordsAggregate - Class in loci.poi.hssf.record.aggregates

ColumnInfoRecordsAggregate() - Constructor for class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

ColumnMap - Class in ome.metakit

Class representating a column mapping in a Metakit database file.

ColumnMap(Column, RandomAccessInputStream, int) - Constructor for class ome.metakit.ColumnMap

columns - Variable in class loci.poi.hssf.model.Sheet

columns - Variable in class mdbtools.libmdb.MdbTableDef

ColumnTest - Class in mdbtools.tests

ColumnTest() - Constructor for class mdbtools.tests.ColumnTest

com - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the COM marker segments found in main and tile-part headers.

COM - Static variable in interface jj2000.j2k.codestream.Markers

Comment (COM): 0xFF64

com.luratech.lwf - package com.luratech.lwf

com.sun.media.imageio.plugins.bmp - package com.sun.media.imageio.plugins.bmp

Package containing the public classes used by the Sun BMP plug-in for the Image I/O Framework.

com.sun.media.imageio.plugins.jpeg2000 - package com.sun.media.imageio.plugins.jpeg2000

Package containing the public classes used by the Sun JPEG 2000 plug-in for the Image I/O Framework.

com.sun.media.imageio.plugins.pnm - package com.sun.media.imageio.plugins.pnm

Package containing the public classes used by the Sun PNM plug-in for the Image I/O Framework.

com.sun.media.imageio.plugins.tiff - package com.sun.media.imageio.plugins.tiff

Package containing the public classes used by the TIFF plug-in for the Image I/O Framework.

com.sun.media.imageio.stream - package com.sun.media.imageio.stream

Provides ImageInputStream and ImageOutputStream classes for use with the Java Image I/O Framework.

com.sun.media.imageioimpl.common - package com.sun.media.imageioimpl.common

com.sun.media.imageioimpl.plugins.bmp - package com.sun.media.imageioimpl.plugins.bmp

com.sun.media.imageioimpl.plugins.clib - package com.sun.media.imageioimpl.plugins.clib

com.sun.media.imageioimpl.plugins.gif - package com.sun.media.imageioimpl.plugins.gif

com.sun.media.imageioimpl.plugins.jpeg - package com.sun.media.imageioimpl.plugins.jpeg

com.sun.media.imageioimpl.plugins.jpeg2000 - package com.sun.media.imageioimpl.plugins.jpeg2000

com.sun.media.imageioimpl.plugins.pcx - package com.sun.media.imageioimpl.plugins.pcx

com.sun.media.imageioimpl.plugins.png - package com.sun.media.imageioimpl.plugins.png

com.sun.media.imageioimpl.plugins.pnm - package com.sun.media.imageioimpl.plugins.pnm

com.sun.media.imageioimpl.plugins.raw - package com.sun.media.imageioimpl.plugins.raw

com.sun.media.imageioimpl.plugins.tiff - package com.sun.media.imageioimpl.plugins.tiff

com.sun.media.imageioimpl.plugins.wbmp - package com.sun.media.imageioimpl.plugins.wbmp

com.sun.media.imageioimpl.stream - package com.sun.media.imageioimpl.stream

com.sun.media.jai.imageioimpl - package com.sun.media.jai.imageioimpl

com.sun.media.jai.operator - package com.sun.media.jai.operator

Provides JAI operations which read and write images using the Java Image I/O Framework.

ComboFileFilter - Class in loci.formats.gui

A file filter that recognizes files from a union of other filters.

ComboFileFilter(FileFilter[], String) - Constructor for class loci.formats.gui.ComboFileFilter

Constructs a new filter from a list of other filters.

CommentAnnotation - Class in ome.xml.model

CommentAnnotation() - Constructor for class ome.xml.model.CommentAnnotation

Default constructor.

CommentAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.CommentAnnotation

Constructs CommentAnnotation recursively from an XML DOM tree.

CommentAnnotation(CommentAnnotation) - Constructor for class ome.xml.model.CommentAnnotation

Copy constructor.

comments - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

comments - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

CommentShape - Class in loci.poi.hssf.model

Represents a cell comment.

CommentShape(HSSFComment, int) - Constructor for class loci.poi.hssf.model.CommentShape

Creates the low-level records for a comment.

commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Writes the header data to the bit stream, if it has not been already done.

commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Writes the header data in the codestream and actualize ndata with the header length.

CommonObjectDataSubRecord - Class in loci.poi.hssf.record

The common object data record is used to store all common preferences for an excel object.

CommonObjectDataSubRecord() - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord

CommonObjectDataSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord

Constructs a CommonObjectData record and sets its fields appropriately.

CommonsLogger - Class in loci.poi.util

A logger class that strives to make it as easy as possible for developers to write log calls, while simultaneously making those calls as cheap as possible by performing lazy evaluation of the log message.

CommonsLogger() - Constructor for class loci.poi.util.CommonsLogger

comp - Variable in class jj2000.j2k.roi.encoder.ROI

The components for which the ROI is relevant

COMP_POS_RES_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType

The bit stream is Component/Position/Resolution/Layer progressive : 4

COMPANION_SUFFIXES - Static variable in class loci.formats.in.TiffReader

compare(Object, Object) - Method in class loci.formats.cache.CacheStrategy

Default comparator orders dimensional positions based on distance from the current position, taking into account axis priorities and planar ordering.

compare(Object, Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

compare method.

compareTo(Object) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Compares this TIFFField with another TIFFField by comparing the tags.

compareTo(Object) - Method in class loci.formats.gui.ComboFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.gui.ExtensionFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.gui.FormatFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.gui.NoExtensionFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.tiff.TiffIFDEntry

compareTo(TiffRational) - Method in class loci.formats.tiff.TiffRational

Compares this object with the specified object for order.

compareTo(Object) - Method in class loci.plugins.config.FormatEntry

compareTo(Object) - Method in class loci.plugins.config.LibraryEntry

compareTo(ThumbLoader.SeriesInfo) - Method in class loci.plugins.in.ThumbLoader.SeriesInfo

compareTo(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

compareTo(Object) - Method in class loci.poi.hssf.record.BlankRecord

compareTo(Object) - Method in class loci.poi.hssf.record.BoolErrRecord

compareTo(Object) - Method in class loci.poi.hssf.record.FormulaRecord

compareTo(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord

compareTo(Object) - Method in class loci.poi.hssf.record.NumberRecord

compareTo(Object) - Method in class loci.poi.hssf.record.RowRecord

compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString

compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Compares one rich text string to another.

compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow

compareTo(Region) - Method in class loci.poi.hssf.util.Region

Compares that the given region is the same less than or greater than this region.

compareTo(Object) - Method in class loci.poi.hssf.util.Region

compDef - Variable in class jj2000.j2k.ModuleSpec

The default value for each component.

COMPLEX - Static variable in class loci.poi.ddf.EscherShapePathProperty

COMPONENT_MAPPING_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

ComponentMappingBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Color Specification Box of JPEG JP2 file format.

ComponentMappingBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Constructs a ComponentMappingBox from the provided content byte array.

ComponentMappingBox(short[], byte[], byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Constructs a ComponentMappingBox from the provided component mapping.

ComponentMappingBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Constructs a ComponentMappingBox based on the provided org.w3c.dom.Node.

COMPONENTS_CONFIGURATION - Static variable in class loci.formats.tiff.IFD

COMPONENTS_CONFIGURATION_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_CB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_CR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_DOES_NOT_EXIST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_G - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_R - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_Y - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Composes the content byte array from the data elements.

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Append newString to the end of oldString.

composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Append newString to the end of oldString.

compress(byte[], int, int) - Method in class com.sun.media.imageioimpl.common.LZWCompressor

compress(byte[], CodecOptions) - Method in class loci.formats.codec.Base64Codec

compress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec

2D data block encoding default implementation.

compress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec

Compresses a block of data.

compress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec

Compresses a block of data.

compress(byte[], CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set: width height bitsPerSample channels interleaved littleEndian lossless

compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEGCodec

The CodecOptions parameter should have the following fields set: width height channels bitsPerSample interleaved littleEndian signed

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZOCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZWCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.MJPBCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSRLECodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSVideoCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.NikonCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.PackbitsCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.RPZACodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.TargaRLECodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.ZlibCodec

compress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Encodes a strip of data.

compress(byte[]) - Static method in class loci.poi.ddf.EscherBlipWMFRecord

Compress the contents of the provided array

compressBuffer(int, byte[], int, int, int, int) - Method in class loci.formats.out.JPEG2000Writer

Compresses the buffer.

CompressDecompressTest - Class in loci.tests.testng

Tests the various codec used to compress and decompress data.

CompressDecompressTest() - Constructor for class loci.tests.testng.CompressDecompressTest

compressed - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

COMPRESSED_BITS_PER_PIXEL - Static variable in class loci.formats.tiff.IFD

compression - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the Compression tag.

compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

compression - Variable in class loci.formats.FormatWriter

Current compression type.

COMPRESSION - Static variable in class loci.formats.tiff.IFD

Compression - Enum in ome.xml.model.enums

COMPRESSION_CCITT_RLE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_CCITT_T_4 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_CCITT_T_6 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_DEFLATE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_GZIP - Static variable in class loci.formats.in.LiFlimReader

COMPRESSION_J2K - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_J2K_LOSSY - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_JPEG - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_KEY - Static variable in class loci.formats.in.LiFlimReader

COMPRESSION_LZW - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_LZW - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_NONE - Static variable in class loci.formats.in.LiFlimReader

COMPRESSION_OLD_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_PACKBITS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_SUFFIXES - Static variable in class loci.formats.FormatHandler

Suffixes for supported compression types.

COMPRESSION_UNCOMPRESSED - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_ZLIB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

CompressionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Compression.

CompressionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CompressionEnumHandler

compressionNumbers - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Compression tag values for known compression types.

compressionTagValue - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The value to be assigned to the TIFF Compression tag in the TIFF image metadata.

compressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The name of the compression type supported by this compressor.

CompressionType - Enum in loci.formats.codec

An enumeration of compression types.

compressionTypeNames - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

compressionTypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Known TIFF compression types.

compressionTypes - Variable in class loci.formats.FormatWriter

Available compression types.

compressionTypes - Variable in class loci.formats.ImageWriter

Compression types for all file format writers.

CompTransfSpec - Class in jj2000.j2k.image

This class extends ModuleSpec class in order to hold tile specifications for component transformation

CompTransfSpec(int, int, byte) - Constructor for class jj2000.j2k.image.CompTransfSpec

Constructs an empty 'CompTransfSpec' with specified number of tile and components.

computeAxisLengths() - Method in class loci.formats.FileStitcher

Computes axis length arrays, and total axis lengths.

computeIndices(int) - Method in class loci.formats.FileStitcher

Gets the file index, and image index into that file, corresponding to the given global image index.

computeRegionsWrapper(ImageReadParam, boolean, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Wrapper for the protected method computeRegions.

computeRegionsWrapper(ImageReadParam, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Wrapper for the protected method computeRegions.

ConCat - Class in mdbtools.dbengine.functions

ConCat() - Constructor for class mdbtools.dbengine.functions.ConCat

concatenate(List<ImagePlus>) - Method in class loci.plugins.in.Concatenator

Concatenates the list of images as appropriate.

concatenateBox - Variable in class loci.plugins.in.MainDialog

Concatenator - Class in loci.plugins.in

Logic for concatenating multiple images together.

Concatenator() - Constructor for class loci.plugins.in.Concatenator

ConcatPtg - Class in loci.poi.hssf.record.formula

ConcatPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ConcatPtg

ConcatPtg() - Constructor for class loci.poi.hssf.record.formula.ConcatPtg

CONCURRENCY_PROP_NAME - Static variable in class jj2000.j2k.util.ThreadPool

The name of the property that sets the concurrency level: jj2000.j2k.util.ThreadPool.concurrency

Condition - Class in mdbtools.dbengine.sql

Condition() - Constructor for class mdbtools.dbengine.sql.Condition

configTree - Static variable in class loci.tests.testng.FormatReaderTest

Configuration tree structure containing dataset metadata.

configTree - Static variable in class loci.tests.testng.FormatWriterTest

Configuration tree structure containing dataset metadata.

Configuration - Class in loci.tests.testng

Source code: Trac, Gitweb

Configuration(String, String) - Constructor for class loci.tests.testng.Configuration

Configuration(IFormatReader, String) - Constructor for class loci.tests.testng.Configuration

ConfigurationTree - Class in loci.tests.testng

Stores configuration data about files in a directory structure.

ConfigurationTree(String) - Constructor for class loci.tests.testng.ConfigurationTree

Creates a new configuration tree rooted at the given directory in the file system.

ConfigWindow - Class in loci.plugins.config

A window for managing configuration of the LOCI plugins.

ConfigWindow() - Constructor for class loci.plugins.config.ConfigWindow

Constants - Class in loci.common

Legacy delegator class for ome.scifio.common.Constants.

Constants() - Constructor for class loci.common.Constants

Constants - Class in loci.poi.hpsf

Defines constants of general use.

Constants() - Constructor for class loci.poi.hpsf.Constants

Constants - Class in mdbtools.libmdb

copied from mdbtools.h

Constants() - Constructor for class mdbtools.libmdb.Constants

Constants - Class in ome.scifio.common

Constants that are used within many classes in loci.common.

Constants() - Constructor for class ome.scifio.common.Constants

construct(int, List) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

constructDialog() - Method in class loci.plugins.in.ColorDialog

constructDialog() - Method in class loci.plugins.in.CropDialog

constructDialog() - Method in class loci.plugins.in.FilePatternDialog

constructDialog() - Method in class loci.plugins.in.IdDialog

constructDialog() - Method in class loci.plugins.in.ImporterDialog

constructDialog() - Method in class loci.plugins.in.LocationDialog

constructDialog() - Method in class loci.plugins.in.MainDialog

constructDialog() - Method in class loci.plugins.in.MemoryDialog

constructDialog() - Method in class loci.plugins.in.RangeDialog

constructDialog() - Method in class loci.plugins.in.SeriesDialog

constructDialog() - Method in class loci.plugins.in.SwapDialog

constructDialog() - Method in class loci.plugins.in.UpgradeDialog

constructImage(int, int, int, int, boolean, boolean, DataBuffer) - Static method in class loci.formats.gui.AWTImageTools

Creates an image with the given DataBuffer.

constructImage(int, int, int, int, boolean, boolean, DataBuffer, ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Creates an image with the given DataBuffer.

constructLoader() - Static method in class loci.formats.gui.LegacyQTTools

contains(Object) - Method in class loci.common.IniList

contains(int, short) - Method in class loci.poi.hssf.util.Region

Answers: "is the row/column inside this range?"

contains(double) - Method in class loci.poi.util.DoubleList

Returns true if this list contains the specified element.

contains(int) - Method in class loci.poi.util.IntList

Returns true if this list contains the specified element.

contains(short) - Method in class loci.poi.util.ShortList

Returns true if this list contains the specified element.

containsAll(Collection<?>) - Method in class loci.common.IniList

containsAll(DoubleList) - Method in class loci.poi.util.DoubleList

Returns true if this list contains all of the elements of the specified collection.

containsAll(IntList) - Method in class loci.poi.util.IntList

Returns true if this list contains all of the elements of the specified collection.

containsAll(ShortList) - Method in class loci.poi.util.ShortList

Returns true if this list contains all of the elements of the specified collection.

containsKey(Object) - Method in class loci.common.IniTable

containsKey(Object) - Method in class loci.poi.util.BinaryTree

Returns true if this map contains a mapping for the specified key.

containsPoint(int, int) - Method in class ome.scifio.common.Region

Returns true if the point specified by the given X and Y coordinates is contained within this region.

containsTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Determines whether a TIFF field with the given tag number is contained in this directory.

containsValue(int[], int) - Static method in class loci.common.DataTools

Returns true if the given value is contained in the given array.

containsValue(Object) - Method in class loci.common.IniTable

containsValue(Object) - Method in class loci.poi.util.BinaryTree

Returns true if this map maps one or more keys to the specified value.

containsValue(int[], int) - Static method in class ome.scifio.common.DataTools

Returns true if the given value is contained in the given array.

CONTIGUOUS_CODESTREAM_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

ContinueRecord - Class in loci.poi.hssf.record

Title: Continue Record - Helper class used primarily for SST Records

ContinueRecord() - Constructor for class loci.poi.hssf.record.ContinueRecord

default constructor

ContinueRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ContinueRecord

Main constructor -- kinda dummy because we don't validate or fill fields

CONTRAST - Static variable in class loci.formats.tiff.IFD

CONTRAST_HARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Contrast" tag.

CONTRAST_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Contrast" tag.

CONTRAST_SOFT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Contrast" tag.

ContrastMethod - Enum in ome.xml.model.enums

ContrastMethodEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ContrastMethod.

ContrastMethodEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

ControlPtg - Class in loci.poi.hssf.record.formula

ControlPtg() - Constructor for class loci.poi.hssf.record.formula.ControlPtg

ConversionTest - Class in loci.tests.testng

ConversionTest() - Constructor for class loci.tests.testng.ConversionTest

convert(String, String) - Static method in class loci.formats.FormatTools

Convenience method for converting the specified input file to the specified output file.

convert(IFormatReader, IFormatWriter, String) - Static method in class loci.formats.FormatTools

Convenience method for writing all of the images and metadata obtained from the specified IFormatReader into the specified IFormatWriter.

convert(long, RandomAccessInputStream, int, int, int) - Static method in class loci.poi.poifs.storage.DocumentBlock

convert a single long array into an array of DocumentBlock instances

convert(byte[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

convert a single long array into an array of SmallDocumentBlock instances

convert(BlockWritable[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

Factory for creating SmallDocumentBlocks from DocumentBlocks

ConvertAnchor - Class in loci.poi.hssf.model

$Id: ConvertAnchor.java 562536 2007-08-03 18:09:41Z yegor $

ConvertAnchor() - Constructor for class loci.poi.hssf.model.ConvertAnchor

convertDate(long, int) - Static method in class loci.common.DateTools

Converts the given timestamp into an ISO8601 date.

convertDate(long, int, String) - Static method in class loci.common.DateTools

Converts the given timestamp into a date string with the given format.

convertDate(long, int, String, boolean) - Static method in class loci.common.DateTools

Converts the given timestamp into a date string with the given format.

convertDate(long, int) - Static method in class ome.scifio.common.DateTools

Converts the given timestamp into an ISO8601 date.

convertDate(long, int, String) - Static method in class ome.scifio.common.DateTools

Converts the given timestamp into a date string with the given format.

convertDate(long, int, String, boolean) - Static method in class ome.scifio.common.DateTools

Converts the given timestamp into a date string with the given format.

convertFactor - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The value by which the absolute value of the data has to be divided in order to get the real absolute value.

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Creates a default image metadata object and merges in the supplied metadata.

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

convertMetadata(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Copies information from a metadata retrieval object (source) into a metadata store (destination).

convertMetadata(String, MetadataStore) - Method in interface loci.formats.services.OMEXMLService

Converts information from an OME-XML string (source) into a metadata store (destination).

convertMetadata(MetadataRetrieve, MetadataStore) - Method in interface loci.formats.services.OMEXMLService

Copies information from a metadata retrieval object (source) into a metadata store (destination).

convertMetadata(String, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl

convertMetadata(MetadataRetrieve, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl

convertObjectToString(Object) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Converts the provided object to String

convertRenderedImage(RenderedImage) - Static method in class loci.formats.gui.AWTImageTools

Converts a java.awt.image.RenderedImage into a java.awt.image.BufferedImage.

convertSharedFormulaRecord(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord

Creates a non shared formula from the shared formula counter part

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Creates a default stream metadata object and merges in the supplied metadata.

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

convertToByte(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

convertToExpMantissa(float) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Converts the floating point value to its exponent-mantissa representation.

convertToFloat() - Method in class loci.plugins.util.RecordedImageProcessor

convertToRGB() - Method in class loci.plugins.util.RecordedImageProcessor

convertToShort(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

convolve(float[], int, int) - Method in class loci.plugins.util.RecordedImageProcessor

convolve3x3(int[]) - Method in class loci.plugins.util.RecordedImageProcessor

coordinates - Variable in class loci.formats.in.BaseZeissReader

CoordInfo - Class in jj2000.j2k.codestream

This class is used to store the coordinates of objects such as code-blocks or precincts.

CoordInfo(int, int, int, int) - Constructor for class jj2000.j2k.codestream.CoordInfo

Constructor.

CoordInfo() - Constructor for class jj2000.j2k.codestream.CoordInfo

Empty contructor

copy(byte[], int, int, byte[], int) - Static method in class loci.poi.hpsf.Util

Copies a part of a byte array into another byte array.

copy(byte[], int, int) - Static method in class loci.poi.hpsf.Util

Copies bytes from a source byte array into a new byte array.

copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

copyBinDataList() - Method in class ome.xml.model.Mask

copyBinDataList() - Method in class ome.xml.model.Pixels

copyBits(ImageProcessor, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

copyBooleanAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyChannelList() - Method in class ome.xml.model.Pixels

copyCommentAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Copies an arbitrary rectangular region of the RenderedImage into a caller-supplied WritableRaster.

copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

copyDatasetList() - Method in class ome.xml.model.OME

copyDetectorList() - Method in class ome.xml.model.Instrument

copyDichroicList() - Method in class ome.xml.model.Instrument

copyDoubleAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyExperimenterGroupList() - Method in class ome.xml.model.OME

copyExperimenterList() - Method in class ome.xml.model.OME

copyExperimentList() - Method in class ome.xml.model.OME

copyFileAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyFilterList() - Method in class ome.xml.model.Instrument

copyFilterSetList() - Method in class ome.xml.model.Instrument

copyImageList() - Method in class ome.xml.model.OME

copyInstrumentList() - Method in class ome.xml.model.OME

copyInt(byte[], int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Copies that four bytes of an integer into the byte array.

copyLightSourceList() - Method in class ome.xml.model.Instrument

copyLightSourceSettingsList() - Method in class ome.xml.model.MicrobeamManipulation

copyLinkedAnnotationList() - Method in class ome.xml.model.Annotation

copyLinkedAnnotationList() - Method in class ome.xml.model.Channel

copyLinkedAnnotationList() - Method in class ome.xml.model.Dataset

copyLinkedAnnotationList() - Method in class ome.xml.model.Experimenter

copyLinkedAnnotationList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedAnnotationList() - Method in class ome.xml.model.Image

copyLinkedAnnotationList() - Method in class ome.xml.model.Pixels

copyLinkedAnnotationList() - Method in class ome.xml.model.Plane

copyLinkedAnnotationList() - Method in class ome.xml.model.Plate

copyLinkedAnnotationList() - Method in class ome.xml.model.PlateAcquisition

copyLinkedAnnotationList() - Method in class ome.xml.model.Project

copyLinkedAnnotationList() - Method in class ome.xml.model.Reagent

copyLinkedAnnotationList() - Method in class ome.xml.model.ROI

copyLinkedAnnotationList() - Method in class ome.xml.model.Screen

copyLinkedAnnotationList() - Method in class ome.xml.model.Well

copyLinkedAnnotationList() - Method in class ome.xml.model.WellSample

copyLinkedChannelList() - Method in class ome.xml.model.Annotation

copyLinkedChannelList() - Method in class ome.xml.model.FilterSet

copyLinkedDatasetList() - Method in class ome.xml.model.Annotation

copyLinkedDatasetList() - Method in class ome.xml.model.Experimenter

copyLinkedDatasetList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedDatasetList() - Method in class ome.xml.model.Image

copyLinkedDatasetList() - Method in class ome.xml.model.Project

copyLinkedEmissionFilterList() - Method in class ome.xml.model.FilterSet

copyLinkedEmissionFilterList() - Method in class ome.xml.model.LightPath

copyLinkedExcitationFilterList() - Method in class ome.xml.model.FilterSet

copyLinkedExcitationFilterList() - Method in class ome.xml.model.LightPath

copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Annotation

copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Experimenter

copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Leader

copyLinkedExperimenterList() - Method in class ome.xml.model.Annotation

copyLinkedExperimenterList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedExperimentList() - Method in class ome.xml.model.Experimenter

copyLinkedFilterSetEmissionFilterList() - Method in class ome.xml.model.Filter

copyLinkedFilterSetExcitationFilterList() - Method in class ome.xml.model.Filter

copyLinkedFilterSetList() - Method in class ome.xml.model.Dichroic

copyLinkedImageList() - Method in class ome.xml.model.Annotation

copyLinkedImageList() - Method in class ome.xml.model.Dataset

copyLinkedImageList() - Method in class ome.xml.model.Experiment

copyLinkedImageList() - Method in class ome.xml.model.Experimenter

copyLinkedImageList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedImageList() - Method in class ome.xml.model.Instrument

copyLinkedImageList() - Method in class ome.xml.model.MicrobeamManipulation

copyLinkedImageList() - Method in class ome.xml.model.ROI

copyLinkedLaserList() - Method in class ome.xml.model.Pump

copyLinkedLeaderList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedLightPathEmissionFilterList() - Method in class ome.xml.model.Filter

copyLinkedLightPathExcitationFilterList() - Method in class ome.xml.model.Filter

copyLinkedLightPathList() - Method in class ome.xml.model.Dichroic

copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Experimenter

copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Image

copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.ROI

copyLinkedPixelsList() - Method in class ome.xml.model.Annotation

copyLinkedPlaneList() - Method in class ome.xml.model.Annotation

copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.Annotation

copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.WellSample

copyLinkedPlateList() - Method in class ome.xml.model.Annotation

copyLinkedPlateList() - Method in class ome.xml.model.Screen

copyLinkedProjectList() - Method in class ome.xml.model.Annotation

copyLinkedProjectList() - Method in class ome.xml.model.Dataset

copyLinkedProjectList() - Method in class ome.xml.model.Experimenter

copyLinkedProjectList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedReagentList() - Method in class ome.xml.model.Annotation

copyLinkedROIList() - Method in class ome.xml.model.Annotation

copyLinkedROIList() - Method in class ome.xml.model.Image

copyLinkedROIList() - Method in class ome.xml.model.MicrobeamManipulation

copyLinkedScreenList() - Method in class ome.xml.model.Annotation

copyLinkedScreenList() - Method in class ome.xml.model.Plate

copyLinkedWellList() - Method in class ome.xml.model.Annotation

copyLinkedWellList() - Method in class ome.xml.model.Reagent

copyLinkedWellSampleList() - Method in class ome.xml.model.Annotation

copyLinkedWellSampleList() - Method in class ome.xml.model.Image

copyLinkedWellSampleList() - Method in class ome.xml.model.PlateAcquisition

copyListAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyLongAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyMicrobeamManipulationList() - Method in class ome.xml.model.Experiment

copyNodes(POIFSFileSystem, POIFSFileSystem, List) - Method in class loci.poi.POIDocument

Copies nodes from one POIFS to the other minus the excepts

copyObjectiveList() - Method in class ome.xml.model.Instrument

copyPlaneList() - Method in class ome.xml.model.Pixels

copyPlateAcquisitionList() - Method in class ome.xml.model.Plate

copyPlateList() - Method in class ome.xml.model.OME

copyProjectList() - Method in class ome.xml.model.OME

copyReagentList() - Method in class ome.xml.model.Screen

copyright - Static variable in class jj2000.j2k.JJ2KInfo

The copyright message string.

COPYRIGHT - Static variable in class loci.formats.tiff.IFD

copyROIList() - Method in class ome.xml.model.OME

copyScaled(BufferedImage, BufferedImage, Object) - Static method in class loci.formats.gui.AWTImageTools

Copies the source image into the target, applying scaling.

copyScreenList() - Method in class ome.xml.model.OME

copyShapeList() - Method in class ome.xml.model.Union

copyTagAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyTermAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyTiffDataList() - Method in class ome.xml.model.Pixels

copyTimestampAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyWellList() - Method in class ome.xml.model.Plate

copyWellSampleList() - Method in class ome.xml.model.Well

copyXMLAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

core - Variable in class loci.formats.FormatReader

Core metadata values.

coreIndex - Variable in class loci.formats.FormatReader

The number of the current series.

coreIndexToSeries(int) - Method in class loci.formats.FileStitcher

coreIndexToSeries(int) - Method in class loci.formats.FormatReader

coreIndexToSeries(int) - Method in interface loci.formats.IFormatReader

Returns the series corresponding to the specified core index.

coreIndexToSeries(int) - Method in class loci.formats.ImageReader

coreIndexToSeries(int) - Method in class loci.formats.ReaderWrapper

CoreMetadata - Class in loci.formats

Encompasses core metadata values.

CoreMetadata() - Constructor for class loci.formats.CoreMetadata

CoreMetadata(IFormatReader, int) - Constructor for class loci.formats.CoreMetadata

CoreMetadata(CoreMetadata) - Constructor for class loci.formats.CoreMetadata

Correction - Enum in ome.xml.model.enums

CorrectionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Correction.

CorrectionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CorrectionEnumHandler

CorruptedCodestreamException - Exception in jj2000.j2k.codestream

Thsi exception is thrown whenever an illegal value is read from a bit stream.

CorruptedCodestreamException() - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException

Constructs a new CorruptedCodestreamException exception with no detail message.

CorruptedCodestreamException(String) - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException

Constructs a new CorruptedCodestreamException exception with the specified detail message.

cortime - Variable in class loci.formats.in.SDTInfo

Correlation time [ms].

COUNT - Static variable in class loci.poi.hssf.record.FnGroupCountRecord

suggested default (14 dec)

Count - Class in mdbtools.dbengine.functions

Count() - Constructor for class mdbtools.dbengine.functions.Count

countBlocks() - Method in interface loci.poi.poifs.filesystem.BATManaged

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.property.PropertyTable

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Return the number of BigBlock's this instance uses

countImages() - Method in class loci.formats.in.BaseZeissReader

countImages() - Method in class loci.formats.in.ZeissTIFFReader

countImages() - Method in class loci.formats.in.ZeissZVIReader

countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Total count of all children and their children's children.

countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShape

Count of all children and their childrens children.

countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Count of all children and their childrens children.

CountryRecord - Class in loci.poi.hssf.record

Title: Country Record (aka WIN.INI country)

CountryRecord() - Constructor for class loci.poi.hssf.record.CountryRecord

CountryRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CountryRecord

Constructs a CountryRecord and sets its fields appropriately

CP_037 - Static variable in class loci.poi.hpsf.Constants

Codepage 037, a special case

CP_EUC_JP - Static variable in class loci.poi.hpsf.Constants

Codepage for EUC-JP

CP_EUC_KR - Static variable in class loci.poi.hpsf.Constants

Codepage for EUC-KR

CP_GB18030 - Static variable in class loci.poi.hpsf.Constants

Codepage for GB18030

CP_GB2312 - Static variable in class loci.poi.hpsf.Constants

Codepage for GB2312

CP_GBK - Static variable in class loci.poi.hpsf.Constants

Codepage for GBK, aka MS936

CP_ISO_2022_JP1 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-2022-JP

CP_ISO_2022_JP2 - Static variable in class loci.poi.hpsf.Constants

Another codepage for ISO-2022-JP

CP_ISO_2022_JP3 - Static variable in class loci.poi.hpsf.Constants

Yet another codepage for ISO-2022-JP

CP_ISO_2022_KR - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-2022-KR

CP_ISO_8859_1 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-1

CP_ISO_8859_2 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-2

CP_ISO_8859_3 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-3

CP_ISO_8859_4 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-4

CP_ISO_8859_5 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-5

CP_ISO_8859_6 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-6

CP_ISO_8859_7 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-7

CP_ISO_8859_8 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-8

CP_ISO_8859_9 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-9

CP_JOHAB - Static variable in class loci.poi.hpsf.Constants

Codepage for Johab

CP_KOI8_R - Static variable in class loci.poi.hpsf.Constants

Codepage for KOI8-R

CP_MAC_ARABIC - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Arabic (Java: MacArabic)

CP_MAC_CENTRAL_EUROPE - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Central Europe (Latin-2) (Java: MacCentralEurope)

CP_MAC_CHINESE_SIMPLE - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Chinese Simplified (Java: unknown - use EUC_CN, ISO2022_CN_GB, MS936 or cp935)

CP_MAC_CHINESE_TRADITIONAL - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Chinese Traditional (Java: unknown - use Big5, MS950, or cp937)

CP_MAC_CROATIAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Croatian (Java: MacCroatian)

CP_MAC_CYRILLIC - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Cyrillic (Java: MacCyrillic)

CP_MAC_GREEK - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Greek (Java: MacGreek)

CP_MAC_HEBREW - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Hebrew (Java: MacHebrew)

CP_MAC_ICELAND - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Iceland (Java: MacIceland)

CP_MAC_JAPAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Japan (Java: unknown - use SJIS, cp942 or cp943)

CP_MAC_KOREAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Korean (Java: unknown - use EUC_KR or cp949)

CP_MAC_ROMAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Roman (Java: MacRoman)

CP_MAC_ROMANIA - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Romanian (Java: MacRomania)

CP_MAC_THAI - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Thai (Java: MacThai)

CP_MAC_TURKISH - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Turkish (Java: MacTurkish)

CP_MAC_UKRAINE - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Ukrainian (Java: MacUkraine)

CP_MS949 - Static variable in class loci.poi.hpsf.Constants

Codepage for MS949

CP_SJIS - Static variable in class loci.poi.hpsf.Constants

Codepage for SJIS

CP_UNICODE - Static variable in class loci.poi.hpsf.Constants

Codepage for Unicode

CP_US_ACSII - Static variable in class loci.poi.hpsf.Constants

Codepage for US-ASCII

CP_US_ASCII2 - Static variable in class loci.poi.hpsf.Constants

Another codepage for US-ASCII

CP_UTF16 - Static variable in class loci.poi.hpsf.Constants

Codepage for UTF-16

CP_UTF16_BE - Static variable in class loci.poi.hpsf.Constants

Codepage for UTF-16 big-endian

CP_UTF8 - Static variable in class loci.poi.hpsf.Constants

Codepage for UTF-8

CP_WINDOWS_1250 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1250

CP_WINDOWS_1251 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1251

CP_WINDOWS_1252 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1252

CP_WINDOWS_1253 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1253

CP_WINDOWS_1254 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1254

CP_WINDOWS_1255 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1255

CP_WINDOWS_1256 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1256

CP_WINDOWS_1257 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1257

CP_WINDOWS_1258 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1258

cqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

CRC - Class in loci.common

Legacy delegator class for ome.scifio.common.CRC.

CRC() - Constructor for class loci.common.CRC

CRC - Class in ome.scifio.common

A simple class the hold and calculate the CRC for sanity checking of the data.

CRC() - Constructor for class ome.scifio.common.CRC

CRC_32_TABLE - Static variable in class loci.common.CRC

CRC_32_TABLE - Static variable in class ome.scifio.common.CRC

create(InputStream) - Static method in class loci.poi.hpsf.PropertySetFactory

Creates the most specific PropertySet from an InputStream.

create() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

create(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

create() - Method in class loci.poi.hssf.usermodel.EscherGraphics

create() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

create(String, Properties) - Static method in class loci.poi.hssf.usermodel.FontDetails

Create an instance of FontDetails by loading them from the provided property object.

createAggregate(List, int, DrawingManager2) - Static method in class loci.poi.hssf.record.EscherAggregate

Collapses the drawing records into an aggregate.

createAnchor(HSSFAnchor) - Method in class loci.poi.hssf.model.AbstractShape

Creates an escher anchor record from a HSSFAnchor.

createAnchor(HSSFAnchor) - Static method in class loci.poi.hssf.model.ConvertAnchor

createArrayForType(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Creates an array appropriate for the indicated data type.

createBackup() - Method in class loci.poi.hssf.model.Workbook

creates the Backup record with backup set to 0.

createBATBlocks(int[], int) - Static method in class loci.poi.poifs.storage.BATBlock

Create an array of BATBlocks from an array of int block allocation table entries

createBlank(int, short) - Method in class loci.poi.hssf.model.Sheet

create a BLANK record (does not add it to the records contained in this sheet)

createBlocks(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Create the BATBlocks we need

createBOF() - Method in class loci.poi.hssf.model.Sheet

creates the BOF record

createBOF() - Method in class loci.poi.hssf.model.Workbook

creates the BOF record

createBookBool() - Method in class loci.poi.hssf.model.Workbook

creates the BookBool record with saveLinkValues set to 0.

createBoundSheet(int) - Method in class loci.poi.hssf.model.Workbook

create a "bound sheet" or "bundlesheet" (depending who you ask) record Always sets the sheet's bof to 0.

createBox(int, Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates a Box object with the provided type based on the provided Node object based on reflection.

createBuilder() - Static method in class ome.scifio.xml.XMLTools

Creates a new DocumentBuilder via DocumentBuilderFactory or logs and throws a RuntimeException.

createBuiltInName(byte, int) - Method in class loci.poi.hssf.model.Workbook

Generates a NameRecord to represent a built-in region

createCalcCount() - Method in class loci.poi.hssf.model.Sheet

creates the CalcCount record and sets it to 0x64 (default number of iterations)

createCalcMode() - Method in class loci.poi.hssf.model.Sheet

creates the CalcMode record and sets it to 1 (automatic formula caculation)

createCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

Use this to create new cells within the row and return it.

createCell(short, int) - Method in class loci.poi.hssf.usermodel.HSSFRow

Use this to create new cells within the row and return it.

createCellFromRecord(CellValueRecordInterface) - Method in class loci.poi.hssf.usermodel.HSSFRow

create a high level HSSFCell object from an existing low level record.

createCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create a new Cell style and add it to the workbook's style table

createCellXF() - Method in class loci.poi.hssf.model.Workbook

creates a new Cell-type Extneded Format Record and adds it to the end of ExtendedFormatRecords collection

createCodepage() - Method in class loci.poi.hssf.model.Workbook

creates the Codepage record containing the constant stored in CODEPAGE

createColInfo() - Method in class loci.poi.hssf.model.Sheet

creates the ColumnInfo Record and sets it to a default column/width

createColInfo() - Static method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

creates the ColumnInfo Record and sets it to a default column/width

createColorModel(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Creates a ColorModel that may be used with the specified SampleModel.

createColorModel(ColorSpace, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

createComment(HSSFAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Constructs a cell comment.

createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.Index16ColorModel

createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.SignedColorModel

createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel

createCountry() - Method in class loci.poi.hssf.model.Workbook

Creates the Country record with the default country set to 1 and current country set to 7 in case of russian locale ("ru_RU") and 1 otherwise

created - Variable in class loci.formats.out.QTWriter

Time the file was created.

createData() - Method in class loci.tests.IOTester

createDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the instance of HSSFDataFormat for this workbook.

createDateWindow1904() - Method in class loci.poi.hssf.model.Workbook

creates the DateWindow1904 record with windowing set to 0.

createDefaultColWidth() - Method in class loci.poi.hssf.model.Sheet

creates the DefaultColWidth Record and sets it to 8

createDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet

creates the DefaultRowHeight Record and sets its options to 0 and rowheight to 0xff

createDelta() - Method in class loci.poi.hssf.model.Sheet

creates the Delta record and sets it to 0.0010 (default accuracy)

createDequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the dequantizer parameters.

createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager

createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager2

createDimensions() - Method in class loci.poi.hssf.model.Sheet

creates the Dimensions Record and sets it to bogus values (you should set this yourself or let the high level API do it for you)

createDirectory(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

create a new DirectoryEntry

createDirectory(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DirectoryEntry

createDirectory(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

create a new DirectoryEntry in the root directory

createDocument(String, RandomAccessInputStream) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

create a new DocumentEntry

createDocument(String, int, POIFSWriterListener) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

create a new DocumentEntry; the data will be provided later

createDocument(String, RandomAccessInputStream) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DocumentEntry

createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DocumentEntry; the data will be provided later

createDocument(RandomAccessInputStream, String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Create a new document to be added to the root directory

createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

create a new DocumentEntry in the root entry; the data will be provided later

createDocument() - Static method in class ome.scifio.xml.XMLTools

Calls DocumentBuilder.newDocument() on a new builder.

createDocumentInputStream(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

open a document in the root entry's list of entries

createDrawingGroup() - Method in class loci.poi.hssf.model.Workbook

Creates a drawing group record.

createDrawingPatriarch() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates the toplevel drawing patriarch.

createDSF() - Method in class loci.poi.hssf.model.Workbook

creates the DSF record containing a 0 since HSSF can't even create Dual Stream Files

createEntropyDecoder(CodedCBlkDataSrcDec, J2KImageReadParamJava) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Creates and returns the entropy decoder corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.

createEOF() - Method in class loci.poi.hssf.model.Sheet

creates the EOF record

createEOF() - Method in class loci.poi.hssf.model.Workbook

creates the EOF record

createExtendedFormat(int) - Method in class loci.poi.hssf.model.Workbook

Creates an ExtendedFormatRecord object

createExtendedFormat() - Method in class loci.poi.hssf.model.Workbook

creates an default cell type ExtendedFormatRecord object.

createExtendedSST() - Method in class loci.poi.hssf.model.Workbook

Creates the ExtendedSST record with numstrings per bucket set to 0x8.

createExternSheet() - Method in class loci.poi.hssf.model.Workbook

creates a new extern sheet record

createExtSSTRecord(int) - Method in class loci.poi.hssf.record.SSTRecord

Creates an extended string record based on the current contents of the current SST record.

createFnGroupCount() - Method in class loci.poi.hssf.model.Workbook

creates the FnGroupCount record containing the Magic number constant of 14.

createFont() - Method in class loci.poi.hssf.model.Workbook

creates a Font record with the following magic values:

createFont() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create a new Font and add it to the workbook's font table

createFooter() - Method in class loci.poi.hssf.model.Sheet

creates the Footer Record and sets it to nothing/0 length

createFormat(int) - Method in class loci.poi.hssf.model.Workbook

Creates a FormatRecord object

createFormat(String) - Method in class loci.poi.hssf.model.Workbook

Creates a FormatRecord, inserts it, and returns the index code.

createFormula(int, short, String) - Method in class loci.poi.hssf.model.Sheet

Attempts to parse the formula into PTGs and create a formula record DOES NOT WORK YET

createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.model.Sheet

Creates a split (freezepane).

createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates a split (freezepane).

createFreezePane(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates a split (freezepane).

createFromMetadata(IIOMetadata) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Creates a TIFFDirectory instance from the contents of an image metadata object.

createFromMetadataNode(TIFFTagSet, Node) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Creates a TIFFField from a TIFF native image metadata node.

createGridset() - Method in class loci.poi.hssf.model.Sheet

creates the Gridset record and sets it to true (user has mucked with the gridlines)

createGroup(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a new group record stored under this patriarch.

createGroup(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Create another group under this group.

createGuts() - Method in class loci.poi.hssf.model.Sheet

creates the Guts record and sets leftrow/topcol guttter and rowlevelmax/collevelmax to 0

createHCenter() - Method in class loci.poi.hssf.model.Sheet

creates the HCenter Record and sets it to false (don't horizontally center)

createHeader() - Method in class loci.poi.hssf.model.Sheet

creates the Header Record and sets it to nothing/0 length

createHideObj() - Method in class loci.poi.hssf.model.Workbook

creates the HideObj record with hide object set to 0.

createImage(String, List<ImageProcessor>) - Static method in class loci.plugins.in.ImagePlusReader

Creates an ImagePlus from the given image processors.

createImage(String, ImageStack, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader

Creates an ImagePlus from the given image stack.

createImage() - Method in class loci.plugins.util.RecordedImageProcessor

createIndex() - Method in class loci.poi.hssf.model.Sheet

creates the Index record - not currently used

createIndexColorModel(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Creates an palette representing colors from given image img.

createIndexedImage(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Creates an image representing given image src using IndexColorModel.

createInputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi

createInstance(RandomAccessIO, HeaderDecoder, J2KImageReadParamJava, DecoderSpecs, boolean, HeaderInfo) - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Creates a bit stream reader of the correct type that works on the provided RandomAccessIO, with the special parameters from the parameter list.

createInstance(CBlkQuantDataSrcEnc, J2KImageWriteParamJava, CBlkSizeSpec, PrecinctSizeSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec) - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder

Creates a EntropyCoder object for the appropriate entropy coding parameters in the parameter list 'pl', and having 'src' as the source of quantized data.

createInstance(CodedCBlkDataSrcEnc, float, CodestreamWriter, J2KImageWriteParamJava) - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Creates a PostCompRateAllocator object for the appropriate rate allocation parameters in the parameter list 'pl', having 'src' as the source of entropy coded data, 'rate' as the target bitrate and 'bw' as the bit stream writer object.

createInstance(CBlkWTDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.quantization.quantizer.Quantizer

Creates a Quantizer object for the appropriate type of quantization specified in the options in the parameter list 'pl', and having 'src' as the source of data to be quantized.

createInstance(Quantizer, J2KImageWriteParamJava) - Static method in class jj2000.j2k.roi.encoder.ROIScaler

Creates a ROIScaler object.

createInstance(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Static method in class jj2000.j2k.roi.ROIDeScaler

Creates a ROIDeScaler object.

createInstance(BlkImgDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT

Creates a ForwardWT object with the specified filters, and with other options specified in the parameter list 'pl'.

createInstance(CBlkWTDataSrcDec, DecoderSpecs) - Static method in class jj2000.j2k.wavelet.synthesis.InverseWT

Creates an InverseWT object that works on the data type of the source, with the special additional parameters from the parameter list.

createInstances() - Method in class loci.tests.testng.FormatReaderTestFactory

createInstances() - Method in class loci.tests.testng.FormatWriterTestFactory

createInterfaceEnd() - Method in class loci.poi.hssf.model.Workbook

creates the InterfaceEnd record

createInterfaceHdr() - Method in class loci.poi.hssf.model.Workbook

creates the InterfaceHdr record

createIteration() - Method in class loci.poi.hssf.model.Sheet

creates the Iteration record and sets it to false (don't iteratively calculate formulas)

createLabelSST(int, short, int) - Method in class loci.poi.hssf.model.Sheet

Create a LABELSST Record (does not add it to the records contained in this sheet)

createLogFile() - Static method in class loci.tests.testng.TestTools

Creates a new log file.

createLSID(String, int...) - Static method in class loci.formats.MetadataTools

Constructs an LSID, given the object type and indices.

createMergedCells() - Method in class loci.poi.hssf.model.Sheet

createMMS() - Method in class loci.poi.hssf.model.Workbook

creates an MMS record

createName() - Method in class loci.poi.hssf.model.Workbook

creates new name

createName() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

creates a new named range and add it to the model

createNewDocument() - Method in class loci.formats.ome.AbstractOMEXMLMetadata

createNewFile() - Method in class loci.common.Location

Creates a new empty file named by this Location's path name iff a file with this name does not already exist.

createNewFile() - Method in class ome.scifio.io.Location

Creates a new empty file named by this Location's path name iff a file with this name does not already exist.

createNewFont() - Method in class loci.poi.hssf.model.Workbook

creates a new font record and adds it to the "font table".

createNumber(int, short, double) - Method in class loci.poi.hssf.model.Sheet

Create a NUMBER Record (does not add it to the records contained in this sheet)

createObjectProtect() - Method in class loci.poi.hssf.model.Sheet

creates an ObjectProtect record with protect set to false.

createOMEXMLMetadata() - Static method in class loci.formats.MetadataTools

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.

createOMEXMLMetadata(String) - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.createOMEXMLMetadata(String) instead.

createOMEXMLMetadata(String, String) - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.createOMEXMLMetadata(String, String) instead.

createOMEXMLMetadata() - Method in interface loci.formats.services.OMEXMLService

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.

createOMEXMLMetadata(String) - Method in interface loci.formats.services.OMEXMLService

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.

createOMEXMLMetadata(String, String) - Method in interface loci.formats.services.OMEXMLService

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.

createOMEXMLMetadata() - Method in class loci.formats.services.OMEXMLServiceImpl

createOMEXMLMetadata(String) - Method in class loci.formats.services.OMEXMLServiceImpl

createOMEXMLMetadata(String, String) - Method in class loci.formats.services.OMEXMLServiceImpl

createOMEXMLRoot(String) - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.createOMEXMLRoot(String) instead.

createOMEXMLRoot(String) - Method in interface loci.formats.services.OMEXMLService

Constructs an OME root node.

createOMEXMLRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl

createOutputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi

createPalette() - Method in class loci.poi.hssf.model.Workbook

Creates a palette record initialized to the default palette

createParsedExpressionTokens(short, RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg

createPassword() - Method in class loci.poi.hssf.model.Sheet

creates a Password record with password set to 00.

createPassword() - Method in class loci.poi.hssf.model.Workbook

creates the Password record with password set to 0.

createPasswordRev4() - Method in class loci.poi.hssf.model.Workbook

creates the PasswordRev4 record with password set to 0.

createPicture(HSSFClientAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a picture.

createPicture(HSSFChildAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Creates a picture.

createPolygon(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a polygon

createPolygon(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Creates a polygon

createPrecision() - Method in class loci.poi.hssf.model.Workbook

creates the Precision record with precision set to true.

createPrintGridlines() - Method in class loci.poi.hssf.model.Sheet

creates the PrintGridlines record and sets it to false (that makes for ugly sheets).

createPrintHeaders() - Method in class loci.poi.hssf.model.Sheet

creates the PrintHeaders record and sets it to false (we don't create headers yet so why print them)

createPrintSetup() - Method in class loci.poi.hssf.model.Sheet

creates the PrintSetup Record and sets it to defaults and marks it invalid

createProcessor(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

createProperties(byte[], int, short) - Method in class loci.poi.ddf.EscherPropertyFactory

Create new properties from a byte array.

createPropertyBlockArray(List, int) - Static method in class loci.poi.poifs.storage.PropertyBlock

Create an array of PropertyBlocks from an array of Property instances, creating empty Property instances to make up any shortfall

createProtect() - Method in class loci.poi.hssf.model.Sheet

creates a Protect record with protect set to false.

createProtect() - Method in class loci.poi.hssf.model.Workbook

creates the Protect record with protect set to false.

createProtectionRev4() - Method in class loci.poi.hssf.model.Workbook

creates the ProtectionRev4 record with protect set to false.

createPtg(RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg

createRawImage() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Creates a BufferedImage whose underlying data array will be suitable for holding the raw decoded output of the decodeRaw method.

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

createRecord(byte[], int) - Method in class loci.poi.ddf.DefaultEscherRecordFactory

Generates an escher record including the any children contained under that record.

createRecord(byte[], int) - Method in interface loci.poi.ddf.EscherRecordFactory

Create a new escher record from the data provided.

createRecord(RecordInputStream) - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory

create a record, if there are MUL records than multiple records are returned digested into the non-mul form.

createRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

createRecords(InputStream, boolean) - Static method in class loci.poi.hssf.dev.BiffViewer

Create an array of records from an input stream

createRecords(InputStream) - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

Create an array of records from an input stream

createRefMode() - Method in class loci.poi.hssf.model.Sheet

creates the RefMode record and sets it to A1 Mode (default reference mode)

createRefreshAll() - Method in class loci.poi.hssf.model.Workbook

creates the RefreshAll record with refreshAll set to true.

createROIDeScaler(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Creates and returns the ROIDeScaler corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.

createRoot() - Method in class loci.formats.meta.AggregateMetadata

createRoot() - Method in class loci.formats.meta.DummyMetadata

createRoot() - Method in class loci.formats.meta.FilterMetadata

createRoot() - Method in interface loci.formats.meta.MetadataStore

createRoot() - Method in class loci.formats.ome.OMEXMLMetadataImpl

createRow(int) - Method in class loci.poi.hssf.model.Sheet

Create a row record.

createRow(int) - Static method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Create a row record.

createRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Create a new row within the sheet and return the high level representation

createSaveRecalc() - Method in class loci.poi.hssf.model.Sheet

creates the SaveRecalc record and sets it to true (recalculate before saving)

createScenarioProtect() - Method in class loci.poi.hssf.model.Sheet

creates a ScenarioProtect record with protect set to false.

createSelection() - Method in class loci.poi.hssf.model.Sheet

Creates the Selection record and sets it to nothing selected

createShape(HSSFShape, int) - Static method in class loci.poi.hssf.model.AbstractShape

Create a new shape object used to create the escher records.

createShape(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Create a new simple shape under this group.

createSheet(List, int, int) - Static method in class loci.poi.hssf.model.Sheet

read support (offset used as starting point for search) for low level API.

createSheet(List, int) - Static method in class loci.poi.hssf.model.Sheet

read support (offset = 0) Same as createSheet(Record[] recs, int, int) only the record offset is assumed to be 0.

createSheet() - Static method in class loci.poi.hssf.model.Sheet

Creates a sheet with all the usual records minus values and the "index" record (not required).

createSheet() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.

createSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.

createSimpleShape(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a simple shape.

createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.model.Sheet

Creates a split pane.

createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates a split pane.

createSST() - Method in class loci.poi.hssf.model.Workbook

Creates the SST record with no strings and the unique/num string set to 0

createStack(List<ImageProcessor>, List<String>, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader

Creates an image stack from the given image processors.

createStyle(int) - Method in class loci.poi.hssf.model.Workbook

Creates a StyleRecord object

createSubRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.SubRecord

createTabId() - Method in class loci.poi.hssf.model.Workbook

creates the TabId record containing an array of 0,1,2.

createTempFile(String, String) - Static method in class loci.poi.util.TempFile

Creates a temporary file.

createTextbox(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Constructs a textbox under the patriarch.

createTextbox(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Create a new textbox under this group.

createUseSelFS() - Method in class loci.poi.hssf.model.Workbook

Creates the UseSelFS object with the use natural language flag set to 0 (false)

createVCenter() - Method in class loci.poi.hssf.model.Sheet

creates the VCenter Record and sets it to false (don't horizontally center)

createWindowOne() - Method in class loci.poi.hssf.model.Workbook

creates the WindowOne record with the following magic values:

createWindowProtect() - Method in class loci.poi.hssf.model.Workbook

creates the WindowProtect record with protect set to false.

createWindowTwo() - Method in class loci.poi.hssf.model.Sheet

creates the WindowTwo Record and sets it to:

createWorkbook(List) - Static method in class loci.poi.hssf.model.Workbook

read support for low level API.

createWorkbook() - Static method in class loci.poi.hssf.model.Workbook

Creates an empty workbook object with three blank sheets and all the empty fields.

createWriteAccess() - Method in class loci.poi.hssf.model.Workbook

creates the WriteAccess record containing the logged in user's name

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

createWSBool() - Method in class loci.poi.hssf.model.Sheet

creates the WSBoolRecord and sets its values to defaults

createXBATBlocks(int[], int, int) - Static method in class loci.poi.poifs.storage.BATBlock

Create an array of XBATBlocks from an array of int block allocation table entries

crg - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the CRG marker segment found in main header

CRG - Static variable in interface jj2000.j2k.codestream.Markers

Component registration (CRG): 0xFF63

CRG_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for CRG marker segment found

crgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN

crop() - Method in class loci.plugins.util.RecordedImageProcessor

cropBox - Variable in class loci.plugins.in.MainDialog

CropDialog - Class in loci.plugins.in

Bio-Formats Importer crop options dialog box.

CropDialog(ImportProcess) - Constructor for class loci.plugins.in.CropDialog

Creates a crop options dialog for the Bio-Formats Importer.

crossChan - Variable in class loci.formats.in.SDTInfo

Cross FCS routing channel number when chan = crossChan and mod == crossMod - Auto FCS otherwise - Cross FCS.

CrosshairStrategy - Class in loci.formats.cache

A crosshair strategy caches planes extending from the the current dimensional position along each individual axis, but not combinations of axes.

CrosshairStrategy(int[]) - Constructor for class loci.formats.cache.CrosshairStrategy

Constructs a crosshair strategy.

crossMod - Variable in class loci.formats.in.SDTInfo

Cross FCS module number.

crossMtResol - Variable in class loci.formats.in.SDTInfo

Macro time clock of cross FCS module in 0.1 ns units.

cs - Variable in class jj2000.j2k.entropy.Progression

Component index for the start of a progression

CS_2C - Static variable in class loci.formats.gui.TwoChannelColorSpace

CSB_APPROX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_ENUM_GREY - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_ENUM_SRGB - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_ENUM_YCC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_METH - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

Colour Specification Box Fields

CSB_PREC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

cScroll - Variable in class loci.plugins.util.DataBrowser

csiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

cSlider - Variable in class loci.formats.gui.ImageViewer

cSliders - Variable in class loci.plugins.util.DataBrowser

cspoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

css - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Causal stripes specifications

CSV_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

ctp - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

The cumulative number of truncation points

cts - Variable in class jj2000.j2k.decoder.DecoderSpecs

The component transformation specifications

ctX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The current tile horizontal index

ctY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The current tile vertical index

cTypes - Variable in class loci.formats.CoreMetadata

Deprecated.

use CoreMetadata.moduloC instead

culx - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The horizontal coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.

culy - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The vertical coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.

cur_pg - Variable in class mdbtools.libmdb.MdbHandle

cur_pg_num - Variable in class mdbtools.libmdb.MdbTableDef

cur_phys_pg - Variable in class mdbtools.libmdb.MdbTableDef

cur_pos - Variable in class mdbtools.libmdb.MdbHandle

cur_row - Variable in class mdbtools.libmdb.MdbTableDef

cur_value_len - Variable in class mdbtools.libmdb.MdbColumn

cur_value_start - Variable in class mdbtools.libmdb.MdbColumn

curCycle - Variable in class loci.formats.in.SDTInfo

Current cycle (accumulation cycle in FLOW mode) - (if multi-cycle measurement).

curPage - Variable in class loci.formats.in.SDTInfo

Current measured page.

current - Variable in class loci.formats.ImageWriter

Current form index.

currentId - Variable in class loci.formats.FormatHandler

Name of current file.

currentId - Variable in class loci.formats.ImageWriter

Name of current file.

currentLength - Variable in class loci.poi.hssf.record.RecordInputStream

currentPos - Variable in class loci.formats.cache.Cache

Current dimensional position.

currentRow - Variable in class mdbtools.dbengine.MemoryData

currentSid - Variable in class loci.poi.hssf.record.RecordInputStream

currLevel - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

currSize - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

curStep - Variable in class loci.formats.in.SDTInfo

Current step (if multi-step measurement).

curve - Variable in class loci.formats.codec.NikonCodecOptions

CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty

CUSTOM - Static variable in interface jj2000.j2k.wavelet.FilterTypes

User-defined filter: -1

CUSTOM_RENDERED - Static variable in class loci.formats.tiff.IFD

CUSTOM_RENDERED_CUSTOM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "CustomRendered" tag.

CUSTOM_RENDERED_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "CustomRendered" tag.

CustomField - Interface in loci.poi.hssf.record

CustomProperties - Class in loci.poi.hpsf

Maintains the instances of CustomProperty that belong to a DocumentSummaryInformation.

CustomProperties() - Constructor for class loci.poi.hpsf.CustomProperties

CustomProperty - Class in loci.poi.hpsf

This class represents custum properties in the document summary information stream.

CustomProperty() - Constructor for class loci.poi.hpsf.CustomProperty

Creates an empty CustomProperty.

CustomProperty(Property) - Constructor for class loci.poi.hpsf.CustomProperty

Creates a CustomProperty without a name by copying the underlying Property' attributes.

CustomProperty(Property, String) - Constructor for class loci.poi.hpsf.CustomProperty

Creates a CustomProperty with a name.

cycles - Variable in class loci.formats.in.SDTInfo

Cycles (accumulation cycles in FLOW mode).

D

DAILY_BUILD - Static variable in class loci.formats.UpgradeChecker

Location of the JAR artifacts for Bio-Formats' daily build.

DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

data - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

data - Variable in class jj2000.j2k.entropy.CodedCBlk

The compressed data

data - Variable in class jj2000.j2k.image.DataBlkFloat

The array where the data is stored

data - Variable in class jj2000.j2k.image.DataBlkInt

The array where the data is stored

data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

The array where the data is stored

data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

The array where the data is stored

data - Variable in class loci.poi.hssf.record.RecordInputStream

Data - Interface in mdbtools.dbengine

Data represents a set of rows containing data

Data - Class in mdbtools.libmdb

Data() - Constructor for class mdbtools.libmdb.Data

DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For normal .sdt files (setup + data).

DATA_LABEL_PLACEMENT_ABOVE - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_AUTO - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_AXIS - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_BELOW - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_CHART_DEPENDENT - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_INSIDE - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_OUTSIDE - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_RIGHT - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_USER_MOVED - Static variable in class loci.poi.hssf.record.TextRecord

DataBlk - Class in jj2000.j2k.image

This is a generic abstract class to store data from a block of an image.

DataBlk() - Constructor for class jj2000.j2k.image.DataBlk

DataBlkFloat - Class in jj2000.j2k.image

This is an implementation of the DataBlk interface for 32 bit floating point data (float).

DataBlkFloat() - Constructor for class jj2000.j2k.image.DataBlkFloat

Creates a DataBlkFloat with 0 dimensions and no data array (i.e.

DataBlkFloat(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkFloat

Creates a DataBlkFloat with the specified dimensions and position.

DataBlkFloat(DataBlkFloat) - Constructor for class jj2000.j2k.image.DataBlkFloat

Copy constructor.

DataBlkInt - Class in jj2000.j2k.image

This is an implementation of the DataBlk interface for signed 32 bit integral data.

DataBlkInt() - Constructor for class jj2000.j2k.image.DataBlkInt

Creates a DataBlkInt with 0 dimensions and no data array (i.e.

DataBlkInt(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkInt

Creates a DataBlkInt with the specified dimensions and position.

DataBlkInt(DataBlkInt) - Constructor for class jj2000.j2k.image.DataBlkInt

Copy constructor.

dataBlockLength - Variable in class loci.formats.in.SDTInfo

dataBlockOffs - Variable in class loci.formats.in.SDTInfo

Offset of the first data block.

DataBrowser - Class in loci.plugins.util

Extension of StackWindow with additional UI trimmings for animation, virtual stack caching options, metadata, and general beautification.

DataBrowser(ImagePlus) - Constructor for class loci.plugins.util.DataBrowser

DataBrowser(ImagePlus, ImageCanvas, String[], int[]) - Constructor for class loci.plugins.util.DataBrowser

DataBrowser(ImagePlus, ImageCanvas, String[], int[], XMLWindow) - Constructor for class loci.plugins.util.DataBrowser

DataConverter - Class in loci.formats.gui

A utility for reorganizing and converting QuickTime movies, TIFF series and other 4D datasets.

DataConverter() - Constructor for class loci.formats.gui.DataConverter

DataEntryURLBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Data Entry URL Box of JPEG JP2 file format.

DataEntryURLBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from its content data.

DataEntryURLBox(byte, byte[], String) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from its data elements.

DataEntryURLBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from a Node.

DataFormatRecord - Class in loci.poi.hssf.record

The data format record is used to index into a series.

DataFormatRecord() - Constructor for class loci.poi.hssf.record.DataFormatRecord

DataFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DataFormatRecord

Constructs a DataFormat record and sets its fields appropriately.

dataOffs - Variable in class loci.formats.in.SDTInfo

Offset of the data block from the beginning of the file.

Dataset - Class in ome.xml.model

Dataset() - Constructor for class ome.xml.model.Dataset

Default constructor.

Dataset(Element, OMEModel) - Constructor for class ome.xml.model.Dataset

Constructs Dataset recursively from an XML DOM tree.

Dataset(Dataset) - Constructor for class ome.xml.model.Dataset

Copy constructor.

datasetDescription - Variable in class loci.formats.FormatReader

Short description of the structure of the dataset.

DatasetRef - Class in ome.xml.model

DatasetRef() - Constructor for class ome.xml.model.DatasetRef

Default constructor.

DatasetRef(Element, OMEModel) - Constructor for class ome.xml.model.DatasetRef

Constructs DatasetRef recursively from an XML DOM tree.

DatasetRef(DatasetRef) - Constructor for class ome.xml.model.DatasetRef

Copy constructor.

DataSource - Interface in mdbtools.dbengine

DataSource represents the data store.

DataTools - Class in loci.common

A legacy delegator class for ome.scifio.common.DataTools.

DataTools - Class in ome.scifio.common

A utility class with convenience methods for reading, writing and decoding words.

DATATYPE_INT16 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_INT32 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_INT8 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_KEY - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_REAL32 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_REAL64 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_UINT16 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_UINT32 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_UINT8 - Static variable in class loci.formats.in.LiFlimReader

DATE - Static variable in class loci.formats.FormatTools

Date on which this release was built.

date - Variable in class loci.formats.in.SDTInfo

Date of creation.

date() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current date

date() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current date

DATE_FORMAT - Static variable in class loci.formats.in.DeltavisionReader

DATE_FORMAT - Static variable in class loci.formats.in.FV1000Reader

DATE_FORMAT - Static variable in class loci.formats.in.GelReader

DATE_FORMAT - Static variable in class loci.formats.in.IvisionReader

DATE_FORMAT - Static variable in class loci.formats.in.L2DReader

DATE_FORMAT - Static variable in class loci.formats.in.MicromanagerReader

DATE_FORMAT - Static variable in class loci.formats.in.PerkinElmerReader

DATE_FORMAT - Static variable in class loci.formats.in.TCSReader

DATE_FORMATS - Static variable in class loci.formats.in.BaseTiffReader

DATE_FORMATS - Static variable in class loci.formats.in.ICSReader

DATE_TIME - Static variable in class loci.formats.tiff.IFD

DATE_TIME_DIGITIZED - Static variable in class loci.formats.tiff.IFD

DATE_TIME_FORMAT - Static variable in class loci.formats.in.GelReader

DATE_TIME_ORIGINAL - Static variable in class loci.formats.tiff.IFD

dateToFileTime(Date) - Static method in class loci.poi.hpsf.Util

Converts a Date into a filetime.

DateTools - Class in loci.common

A legacy delegator class for ome.scifio.common.DateTools.

DateTools - Class in ome.scifio.common

A utility class with convenience methods for working with dates.

DateWindow1904Record - Class in loci.poi.hssf.record

Title: Date Window 1904 Flag record

DateWindow1904Record() - Constructor for class loci.poi.hssf.record.DateWindow1904Record

DateWindow1904Record(RecordInputStream) - Constructor for class loci.poi.hssf.record.DateWindow1904Record

Constructs a DateWindow1904 record and sets its fields appropriately.

DatRecord - Class in loci.poi.hssf.record

The dat record is used to store options for the chart.

DatRecord() - Constructor for class loci.poi.hssf.record.DatRecord

DatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DatRecord

Constructs a Dat record and sets its fields appropriately.

db_passwd - Variable in class mdbtools.libmdb.MdbFile

DBCELL_CAPACITY - Static variable in class loci.poi.hssf.record.IndexRecord

DBCellRecord - Class in loci.poi.hssf.record

Title: DBCell Record Description: Used by Excel and other MS apps to quickly find rows in the sheets.

DBCellRecord() - Constructor for class loci.poi.hssf.record.DBCellRecord

DBCellRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DBCellRecord

Constructs a DBCellRecord and sets its fields appropriately

DC_OFFSET - Static variable in class jj2000.j2k.image.input.ImgReaderPGM

DC offset value used when reading image

deadTimeComp - Variable in class loci.formats.in.SDTInfo

debug(String) - Static method in class loci.plugins.BF

DEBUG - Static variable in class loci.poi.util.POILogger

DebugTools - Class in loci.common

A legacy delegator class for ome.scifio.common.DebugTools.

DebugTools - Class in ome.scifio.common

A utility class with convenience methods for debugging.

DEC_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "component default" specified decomposition

DEC_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "main default" specified decomposition

DEC_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "tile and component specific" specified decomposition

DEC_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "tile specific default" specified decomposition

DecLyrdCBlk - Class in jj2000.j2k.entropy.decoder

This class stores coded (compressed) code-blocks that are organized in layers.

DecLyrdCBlk() - Constructor for class jj2000.j2k.entropy.decoder.DecLyrdCBlk

decode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the input bit stream (located in the ImageInputStream stream, at offset offset, and continuing for byteCount bytes) into the output BufferedImage image.

decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

decode(byte[], int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

decode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor

decode(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

decode() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Convert raw data to escher records.

decodeDate(int) - Static method in class loci.formats.in.MetamorphReader

Converts a Julian date value into a human-readable string.

decodeNextScanline(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeNumber(int) - Static method in class loci.poi.hssf.util.RKUtil

Do the dirty work of decoding; made a private static method to facilitate testing the algorithm

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided byte array b, starting at the offset given by dstOffset.

decodeRaw(short[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided short array s, starting at the offset given by dstOffset.

decodeRaw(int[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided int array i, starting at the offset given by dstOffset.

decodeRaw(float[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided float array f, starting at the offset given by dstOffset.

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

decodeRLE() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

DecoderSpecs - Class in jj2000.j2k.decoder

This class holds references to each module specifications used in the decoding chain.

DecoderSpecs(int, int) - Constructor for class jj2000.j2k.decoder.DecoderSpecs

Initialize all members with the given number of tiles and components.

decodeSymbol(int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Arithmetically decodes one symbol from the bit stream with the given context and returns its decoded value.

decodeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

This function performs the arithmetic decoding.

decodeT4() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeT6() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeTime(int) - Static method in class loci.formats.in.MetamorphReader

Converts a time value in milliseconds into a human-readable string.

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class com.luratech.lwf.lwfDecoder

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int).

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl

decodeToMemoryGray8(byte[], int, int, int) - Method in class com.luratech.lwf.lwfDecoder

decodeToMemoryGray8(byte[], int, int, int) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.decodeToMemoryGray8(byte[], int, int, int).

decodeToMemoryGray8(byte[], int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.Base64Codec

decompress(byte[]) - Method in class loci.formats.codec.BaseCodec

decompress(byte[][]) - Method in class loci.formats.codec.BaseCodec

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.BaseCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.BaseCodec

decompress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec

2D data block decoding default implementation.

decompress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[]) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[][]) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(RandomAccessInputStream, CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses data from the given RandomAccessInputStream.

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

The CodecOptions parameter must be an instance of HuffmanCodecOptions, and should have the following fields set: table bitsPerSample maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEGCodec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

The CodecOptions parameter should have the following fields set: maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZOCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZWCodec

The CodecOptions parameter should have the following fields set: maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MJPBCodec

The CodecOptions parameter must be an instance of MJPBCodecOptions, and should have the following fields set: interlaced width height bitsPerSample littleEndian interleaved

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSRLECodec

The CodecOptions parameter should have the following fields set: width height previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSVideoCodec

The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.NikonCodec

The CodecOptions parameter must be an instance of NikonCodecOptions, and should have the following fields set: lossy vPredictor curve split bitsPerSample maxBytes width height

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PackbitsCodec

The CodecOptions parameter should have the following fields set: maxBytes

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PassthroughCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.QTRLECodec

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec

The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.RPZACodec

The CodecOptions parameter should have the following fields set: width height

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.TargaRLECodec

The CodecOptions parameter should have the following fields set: maxBytes CodecOptions.bitsPerSample

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.ZlibCodec

decompress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Decodes a strip of data.

decompress(byte[], int, int) - Static method in class loci.poi.ddf.EscherBlipWMFRecord

Decompresses a byte array.

decSpec - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The decoder specifications

decSpec - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The decoder specifications

def - Variable in class jj2000.j2k.ModuleSpec

Default value for each tile-component

DEF_BUF_LEN - Static variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

The default buffer length, 1024 bytes

DEF_THREADS_NUM - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The default value for the property in THREADS_PROP_NAME: 0

default_backend - Variable in class mdbtools.libmdb.MdbFile

default_backend - Variable in class mdbtools.libmdb.MdbHandle

DEFAULT_BLOCK_SIZE - Static variable in class ome.scifio.io.NIOInputStream

Block size to use when searching through the stream.

DEFAULT_BLOCK_SIZE - Static variable in class ome.scifio.io.RandomAccessInputStream

Block size to use when searching through the stream.

DEFAULT_BUCKET_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTRecord

DEFAULT_BYTES_PER_STRIP - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

DEFAULT_CALLER - Static variable in class loci.formats.UpgradeChecker

Value of "bioformats.caller" for Bio-Formats utilities.

DEFAULT_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Default character set.

DEFAULT_DIMENSION_ORDER - Static variable in class loci.formats.in.FakeReader

DEFAULT_DISPLAY_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

DEFAULT_HEADER - Static variable in class ome.scifio.common.IniTable

Default header name when no header is available.

DEFAULT_MINIMUM_ELAPSED - Static variable in class loci.formats.Memoizer

Default value for Memoizer.minimumElapsed if none is provided in the constructor.

DEFAULT_PIXEL_TYPE - Static variable in class loci.formats.in.FakeReader

DEFAULT_PORT - Static variable in class loci.ome.io.OmeroReader

DEFAULT_RANGE - Static variable in class loci.formats.cache.CacheStrategy

Default cache range.

DEFAULT_RGB_CHANNEL_COUNT - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_C - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_T - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_X - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_Y - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_Z - Static variable in class loci.formats.in.FakeReader

DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.DocumentSummaryInformation

The document name a document summary information stream usually has in a POIFS filesystem.

DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.SummaryInformation

The document name a summary information stream usually has in a POIFS filesystem.

DEFAULT_VALUE - Static variable in class loci.poi.hssf.record.DeltaRecord

defaultBufferSize - Static variable in class ome.scifio.io.NIOFileHandle

Default NIO buffer size to facilitate buffered I/O.

defaultcolwidth - Variable in class loci.poi.hssf.model.Sheet

DefaultColWidthRecord - Class in loci.poi.hssf.record

Title: Default Column Width Record

DefaultColWidthRecord() - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord

DefaultColWidthRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord

Constructs a DefaultColumnWidth record and sets its fields appropriately.

DefaultDataLabelTextPropertiesRecord - Class in loci.poi.hssf.record

The default data label text properties record identifies the text characteristics of the preceeding text record.

DefaultDataLabelTextPropertiesRecord() - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

DefaultDataLabelTextPropertiesRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Constructs a DefaultDataLabelTextProperties record and sets its fields appropriately.

DefaultEscherRecordFactory - Class in loci.poi.ddf

Generates escher records when provided the byte array containing those records.

DefaultEscherRecordFactory() - Constructor for class loci.poi.ddf.DefaultEscherRecordFactory

Creates an instance of the escher record factory

DefaultMetadataOptions - Class in loci.formats.in

Source code: Trac, Gitweb

DefaultMetadataOptions() - Constructor for class loci.formats.in.DefaultMetadataOptions

DefaultMetadataOptions(MetadataLevel) - Constructor for class loci.formats.in.DefaultMetadataOptions

defaultMinMax(int) - Static method in class loci.formats.FormatTools

Get the default range for the specified pixel type.

defaultrowheight - Variable in class loci.poi.hssf.model.Sheet

DefaultRowHeightRecord - Class in loci.poi.hssf.record

Title: Default Row Height Record Description: Row height for rows with undefined or not explicitly defined heights.

DefaultRowHeightRecord() - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord

DefaultRowHeightRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord

Constructs a DefaultRowHeight record and sets its fields appropriately.

defaultRWBufferSize - Static variable in class ome.scifio.io.NIOFileHandle

Default NIO buffer size to facilitate buffered I/O for read/write streams.

defaultValue - Variable in class loci.plugins.prefs.BooleanOption

The option's default value.

defaultValue - Variable in class loci.plugins.prefs.DoubleOption

The option's default value.

defaultValue - Variable in class loci.plugins.prefs.StringOption

The option's default value.

delayTime - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

DelegateReader - Class in loci.formats

DelegateReader is a file format reader that selects which reader to use for a format if there are two readers which handle the same format.

DelegateReader(String, String) - Constructor for class loci.formats.DelegateReader

Constructs a new delegate reader.

DelegateReader(String, String[]) - Constructor for class loci.formats.DelegateReader

Constructs a new delegate reader.

delete() - Method in class loci.common.Location

Deletes this file.

delete() - Method in interface loci.poi.poifs.filesystem.Entry

Delete this Entry.

delete() - Method in class loci.poi.poifs.filesystem.EntryNode

Delete this Entry.

delete() - Method in class ome.scifio.io.Location

Deletes this file.

deleteChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty

Delete a Property

DeletedArea3DPtg - Class in loci.poi.hssf.record.formula

Title: Deleted Area 3D Ptg - 3D referecnce (Sheet + Area)

DeletedArea3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg

Creates new DeletedArea3DPtg

DeletedArea3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg

deleteData(String) - Method in class loci.tests.IOTester

DeletedRef3DPtg - Class in loci.poi.hssf.record.formula

Title: Deleted Reference 3D Ptg

DeletedRef3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg

Creates new DeletedRef3DPtg

DeletedRef3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg

deleteOnExit() - Method in class loci.common.Location

Request that this file be deleted when the JVM terminates.

deleteOnExit() - Method in class ome.scifio.io.Location

Request that this file be deleted when the JVM terminates.

DELTA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the fourth lifting step coefficient

DELTA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the fourth lifting step coefficient

DeltaRecord - Class in loci.poi.hssf.record

Title: Delta Record

DeltaRecord() - Constructor for class loci.poi.hssf.record.DeltaRecord

DeltaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DeltaRecord

Constructs a Delta record and sets its fields appropriately.

DeltavisionReader - Class in loci.formats.in

DeltavisionReader is the file format reader for Deltavision files.

DeltavisionReader() - Constructor for class loci.formats.in.DeltavisionReader

Constructs a new Deltavision reader.

denom - Variable in class loci.formats.tiff.TiffRational

Components of the rational's fractional representation.

DependencyException - Exception in loci.common.services

Exception thrown when there is an object instantiation error or error processing dependencies.

DependencyException(String) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(String, Class<? extends Service>) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(String, Class<? extends Service>, Throwable) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(Throwable) - Constructor for exception loci.common.services.DependencyException

Default constructor.

depth - Variable in class loci.formats.tools.AmiraParameters

Dequantizer - Class in jj2000.j2k.quantization.dequantizer

This is the abstract class from which all dequantizers must inherit.

Dequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Constructor for class jj2000.j2k.quantization.dequantizer.Dequantizer

Initializes the source of compressed data.

DequantizerParams - Class in jj2000.j2k.quantization.dequantizer

This is the generic ineterface for dequantization parameters.

DequantizerParams() - Constructor for class jj2000.j2k.quantization.dequantizer.DequantizerParams

derived - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Whether or not the components in the current tile uses a derived quantization step size (only relevant in non reversible quantization mode).

DEST_DISTANCE_REF_KILOMETERS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

DEST_DISTANCE_REF_KNOTS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

DEST_DISTANCE_REF_MILES - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

destinationBands - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The sequence of destination bands to receive the source data.

Detector - Class in ome.xml.model

Detector() - Constructor for class ome.xml.model.Detector

Default constructor.

Detector(Element, OMEModel) - Constructor for class ome.xml.model.Detector

Constructs Detector recursively from an XML DOM tree.

Detector(Detector) - Constructor for class ome.xml.model.Detector

Copy constructor.

detectorGain - Variable in class loci.formats.in.BaseZeissReader

detectorOffset - Variable in class loci.formats.in.BaseZeissReader

DetectorSettings - Class in ome.xml.model

DetectorSettings() - Constructor for class ome.xml.model.DetectorSettings

Default constructor.

DetectorSettings(Element, OMEModel) - Constructor for class ome.xml.model.DetectorSettings

Constructs DetectorSettings recursively from an XML DOM tree.

DetectorSettings(DetectorSettings) - Constructor for class ome.xml.model.DetectorSettings

Copy constructor.

DetectorType - Enum in ome.xml.model.enums

DetectorTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for DetectorType.

DetectorTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

detType - Variable in class loci.formats.in.SDTInfo

Detector type (SPC-930 in camera mode).

DG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

DGG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

DIAMONDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DIAMONDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Diamonds

Dichroic - Class in ome.xml.model

Dichroic() - Constructor for class ome.xml.model.Dichroic

Default constructor.

Dichroic(Element, OMEModel) - Constructor for class ome.xml.model.Dichroic

Constructs Dichroic recursively from an XML DOM tree.

Dichroic(Dichroic) - Constructor for class ome.xml.model.Dichroic

Copy constructor.

DichroicRef - Class in ome.xml.model

DichroicRef() - Constructor for class ome.xml.model.DichroicRef

Default constructor.

DichroicRef(Element, OMEModel) - Constructor for class ome.xml.model.DichroicRef

Constructs DichroicRef recursively from an XML DOM tree.

DichroicRef(DichroicRef) - Constructor for class ome.xml.model.DichroicRef

Copy constructor.

DICOM_MAGIC_STRING - Static variable in class loci.formats.in.DicomReader

DicomReader - Class in loci.formats.in

DicomReader is the file format reader for DICOM files.

DicomReader() - Constructor for class loci.formats.in.DicomReader

Constructs a new DICOM reader.

dictionary - Variable in class loci.poi.hpsf.Section

Maps property IDs to section-private PID strings.

difference(byte[], IFD) - Static method in enum loci.formats.tiff.TiffCompression

Performs in-place differencing according to the given predictor value.

DIFFERENTIAL_CORRECTION_APPLIED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDifferential" tag.

DIFFERENTIAL_CORRECTION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDifferential" tag.

DIGITAL_ZOOM_RATIO - Static variable in class loci.formats.tiff.IFD

dilate() - Method in class loci.plugins.util.RecordedImageProcessor

dimensionOrder - Variable in class loci.formats.CoreMetadata

Order in which dimensions are stored.

DimensionOrder - Enum in ome.xml.model.enums

DimensionOrderEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for DimensionOrder.

DimensionOrderEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

DimensionsRecord - Class in loci.poi.hssf.record

Title: Dimensions Record

DimensionsRecord() - Constructor for class loci.poi.hssf.record.DimensionsRecord

DimensionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DimensionsRecord

Constructs a Dimensions record and sets its fields appropriately.

DimensionSwapper - Class in loci.formats

Handles swapping the dimension order of an image series.

DimensionSwapper() - Constructor for class loci.formats.DimensionSwapper

Constructs a DimensionSwapper around a new image reader.

DimensionSwapper(IFormatReader) - Constructor for class loci.formats.DimensionSwapper

Constructs a DimensionSwapper with the given reader.

dimOrder - Variable in class loci.formats.AxisGuesser

Original ordering of internal dimensional axes.

dims - Variable in class loci.poi.hssf.model.Sheet

dimsloc - Variable in class loci.poi.hssf.model.Sheet

DIRECTION_REF_MAGNETIC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSTrackRef", "GPSImgDirectionRef", and "GPSDestBearingRef" tags.

DIRECTION_REF_TRUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSTrackRef", "GPSImgDirectionRef", and "GPSDestBearingRef" tags.

DIRECTORY_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants

DirectoryEntry - Interface in loci.poi.poifs.filesystem

This interface defines methods specific to Directory objects managed by a Filesystem instance.

DirectoryNode - Class in loci.poi.poifs.filesystem

Simple implementation of DirectoryEntry

DirectoryProperty - Class in loci.poi.poifs.property

Directory property

DirectoryProperty(String) - Constructor for class loci.poi.poifs.property.DirectoryProperty

Default constructor

DirectoryProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DirectoryProperty

reader constructor

DirectoryProperty.PropertyComparator - Class in loci.poi.poifs.property

DirectoryProperty.PropertyComparator() - Constructor for class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

display(PrintWriter, int) - Method in class loci.poi.ddf.EscherContainerRecord

display(PrintWriter, int) - Method in class loci.poi.ddf.EscherRecord

The display methods allows escher variables to print the record names according to their hierarchy.

DISPLAY_MODE_OPAQUE - Static variable in class loci.poi.hssf.record.TextRecord

DISPLAY_MODE_TRANSPARENT - Static variable in class loci.poi.hssf.record.TextRecord

displayDataBrowser(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

displayDialog(GenericDialog) - Method in class loci.plugins.in.IdDialog

Asks user whether Bio-Formats should automatically check for upgrades, and if so, checks for an upgrade and prompts user to install it.

displayDialog(GenericDialog) - Method in class loci.plugins.in.ImporterDialog

Displays the dialog, or grabs values from macro options.

displayDialog(GenericDialog) - Method in class loci.plugins.in.SeriesDialog

displayDialog(GenericDialog) - Method in class loci.plugins.in.UpgradeDialog

Asks user whether Bio-Formats should automatically check for upgrades, and if so, checks for an upgrade and prompts user to install it.

DisplayHandler - Class in loci.plugins.in

Logic for displaying images and metadata onscreen using ImageJ.

DisplayHandler(ImportProcess) - Constructor for class loci.plugins.in.DisplayHandler

displayImage(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

Displays the given image according to the configured options.

displayImage5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

displayImages(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler

Displays the given images according to the configured options.

displayNormal(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

Displays in a normal ImageJ window.

displayOMEXML() - Method in class loci.plugins.in.DisplayHandler

Displays OME-XML metadata in a tree in its own window.

displayOriginalMetadata() - Method in class loci.plugins.in.DisplayHandler

Displays standard metadata in a table in its own window.

displayROIs(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler

displayView5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

disposalMethod - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

dispose() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

dispose() - Method in class loci.formats.gui.CacheComponent

dispose() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics

dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

distance(int, int) - Method in class loci.formats.cache.CacheStrategy

Computes the distance from the given axis value to the axis center, taking into account the axis ordering scheme.

dither - Variable in class loci.formats.in.SDTInfo

DividePtg - Class in loci.poi.hssf.record.formula

This PTG implements the standard binomial divide "/"

DividePtg() - Constructor for class loci.poi.hssf.record.formula.DividePtg

Creates new AddPtg

DividePtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DividePtg

DIVIDER - Static variable in class loci.tests.testng.TestTools

dl - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The coded (compressed) data length.

DLL_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created using DLL function SPC_save_data_to_sdtfile (no setup, only data).

dls - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of decomposition levels specifications

DM3_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader

DM4_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader

DNGReader - Class in loci.formats.in

DNGReader is the file format reader for Canon DNG (TIFF) files.

DNGReader() - Constructor for class loci.formats.in.DNGReader

Constructs a new DNG reader.

doCodestreamManipulation() - Method in class jj2000.j2k.util.CodestreamManipulator

This method performs the actual manipulation of the codestream which is the reparsing for tile parts and packed packet headers

doCrop() - Method in class loci.plugins.in.ImporterOptions

document - Variable in class loci.poi.POITextExtractor

The POIDocument that's open

DOCUMENT_NAME - Static variable in class loci.formats.tiff.IFD

DOCUMENT_SUMMARY_INFORMATION_ID - Static variable in class loci.poi.hpsf.wellknown.SectionIDMap

The DocumentSummaryInformation's first and second sections' format ID.

DOCUMENT_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants

DocumentBlock - Class in loci.poi.poifs.storage

A block of document data.

DocumentBlock(RawDataBlock, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

create a document block from a raw data block

DocumentBlock(RandomAccessInputStream, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

Create a single instance initialized with data.

DocumentDescriptor - Class in loci.poi.poifs.filesystem

Class DocumentDescriptor

DocumentDescriptor(POIFSDocumentPath, String) - Constructor for class loci.poi.poifs.filesystem.DocumentDescriptor

Trivial constructor

DocumentEntry - Interface in loci.poi.poifs.filesystem

This interface defines methods specific to Document objects managed by a Filesystem instance.

DocumentInputStream - Class in loci.poi.poifs.filesystem

This class provides methods to read a DocumentEntry managed by a Filesystem instance.

DocumentInputStream(DocumentEntry, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream

Create an InputStream from the specified DocumentEntry

DocumentInputStream(POIFSDocument, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream

Create an InputStream from the specified Document

DocumentNode - Class in loci.poi.poifs.filesystem

Simple implementation of DocumentEntry

DocumentOutputStream - Class in loci.poi.poifs.filesystem

This class provides a wrapper over an OutputStream so that Document writers can't accidently go over their size limits

DocumentProperty - Class in loci.poi.poifs.property

Trivial extension of Property for POIFSDocuments

DocumentProperty(String, int) - Constructor for class loci.poi.poifs.property.DocumentProperty

Constructor

DocumentProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DocumentProperty

reader constructor

DocumentSummaryInformation - Class in loci.poi.hpsf

Convenience class representing a DocumentSummary Information stream in a Microsoft Office document.

DocumentSummaryInformation(PropertySet) - Constructor for class loci.poi.hpsf.DocumentSummaryInformation

Creates a DocumentSummaryInformation from a given PropertySet.

doesContainsSheetName(String, int) - Method in class loci.poi.hssf.model.Workbook

Determines whether a workbook contains the privided sheet name.

domains - Variable in class loci.formats.FormatReader

List of domains in which this format is used.

doStitchTiles() - Method in class loci.plugins.in.ImporterOptions

DOT - Static variable in class loci.formats.ResourceNamer

DOT_RANGE - Static variable in class loci.formats.tiff.IFD

doTest() - Method in class loci.tests.testng.Configuration

DOTTED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DotTestListener - Class in loci.tests.testng

A TestNG listener that displays a "." for each passed test, an "F" for each failure and an "S" for each skip.

DotTestListener() - Constructor for class loci.tests.testng.DotTestListener

DOUBLE - Static variable in class loci.formats.FormatTools

Identifies the DOUBLE data type used to store pixel values.

DOUBLE - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DOUBLE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

DoubleAnnotation - Class in ome.xml.model

DoubleAnnotation() - Constructor for class ome.xml.model.DoubleAnnotation

Default constructor.

DoubleAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.DoubleAnnotation

Constructs DoubleAnnotation recursively from an XML DOM tree.

DoubleAnnotation(DoubleAnnotation) - Constructor for class ome.xml.model.DoubleAnnotation

Copy constructor.

DoubleList - Class in loci.poi.util

A List of double's; as full an implementation of the java.util.List interface as possible, with an eye toward minimal creation of objects the mimicry of List is as follows: if possible, operations designated 'optional' in the List interface are attempted wherever the List interface refers to an Object, substitute double wherever the List interface refers to a Collection or List, substitute DoubleList the mimicry is not perfect, however: operations involving Iterators or ListIterators are not supported remove(Object) becomes removeValue to distinguish it from remove(int index) subList is not supported

DoubleList() - Constructor for class loci.poi.util.DoubleList

create an DoubleList of default size

DoubleList(DoubleList) - Constructor for class loci.poi.util.DoubleList

create a copy of an existing DoubleList

DoubleList(int) - Constructor for class loci.poi.util.DoubleList

create an DoubleList with a predefined initial size

DoubleList2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of doubles.

DoubleList2d() - Constructor for class loci.poi.util.DoubleList2d

DoubleOption - Class in loci.plugins.prefs

A double option for one of the LOCI plugins.

DoubleOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.DoubleOption

Constructs a double option with the parameters from the given map.

DoubleOption(String, boolean, String, String, double) - Constructor for class loci.plugins.prefs.DoubleOption

Constructs a double option with the given parameters.

doublesToBytes(double[], boolean) - Static method in class loci.common.DataTools

Translates an array of double values into an array of byte values.

doublesToBytes(double[], boolean) - Static method in class ome.scifio.common.DataTools

Translates an array of double values into an array of byte values.

doubleToBytes(double, boolean) - Static method in class loci.common.DataTools

Translates the double value into an array of eight bytes.

doubleToBytes(double, boolean) - Static method in class ome.scifio.common.DataTools

Translates the double value into an array of eight bytes.

doubleValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a double.

doUpgradeCheck() - Method in class loci.plugins.in.ImporterOptions

download(URLConnection) - Static method in class loci.plugins.config.InstallWizard

download(URLConnection, File) - Static method in class loci.plugins.config.InstallWizard

draw(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

draw(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

draw3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawBytes(byte[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawChars(char[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawDot(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawDot2(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

Deprecated.

drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

DrawingDump - Class in loci.poi.util

Dump out the aggregated escher records

DrawingDump() - Constructor for class loci.poi.util.DrawingDump

DrawingGroupRecord - Class in loci.poi.hssf.record

DrawingGroupRecord() - Constructor for class loci.poi.hssf.record.DrawingGroupRecord

DrawingGroupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingGroupRecord

DrawingManager - Class in loci.poi.hssf.model

Provides utilities to manage drawing groups.

DrawingManager(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager

DrawingManager2 - Class in loci.poi.hssf.model

Provides utilities to manage drawing groups.

DrawingManager2(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager2

DrawingRecord - Class in loci.poi.hssf.record

DrawingRecord() - Constructor for class loci.poi.hssf.record.DrawingRecord

DrawingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecord

DrawingRecordForBiffViewer - Class in loci.poi.hssf.record

This is purely for the biff viewer.

DrawingRecordForBiffViewer() - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer

DrawingRecordForBiffViewer(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer

DrawingSelectionRecord - Class in loci.poi.hssf.record

DrawingSelectionRecord() - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord

DrawingSelectionRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord

drawLine(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor

drawPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRect(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(String) - Method in class loci.plugins.util.RecordedImageProcessor

drawString(String, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

DSFRecord - Class in loci.poi.hssf.record

Title: Double Stream Flag Record

DSFRecord() - Constructor for class loci.poi.hssf.record.DSFRecord

DSFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DSFRecord

Constructs a DBCellRecord and sets its fields appropriately.

dsInf - Variable in class loci.poi.POIDocument

Holds further metadata on our document

dstHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The height of the region of the destination image to be written.

dstMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The X coordinate of the upper left pixel to be written in the destination image.

dstMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The Y coordinate of the upper left pixel to be written in the destination image.

dstWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The width of the region of the destination image to be written.

dstXOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The horizontal destination offset used, along with sourceXOffset and subsampleX, to map between horizontal source and destination pixel coordinates.

dstYOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The vertical destination offset used, along with sourceYOffset and subsampleY, to map between horizontal source and destination pixel coordinates.

DummyGraphics2d - Class in loci.poi.hssf.usermodel

DummyGraphics2d() - Constructor for class loci.poi.hssf.usermodel.DummyGraphics2d

DummyMetadata - Class in loci.formats.meta

A dummy implementation for MetadataStore and MetadataRetrieve that is used when no other metadata implementations are available.

DummyMetadata() - Constructor for class loci.formats.meta.DummyMetadata

dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWCompressor

dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

dump(byte[], int, int, PrintStream) - Method in class loci.poi.ddf.EscherDump

Decodes the escher stream from a byte array and dumps the results to a print stream.

dump(int, byte[], PrintStream) - Method in class loci.poi.ddf.EscherDump

dump(byte[], long, OutputStream, int, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to an OutputStream

dump(byte[], long, OutputStream, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to an OutputStream

dump(byte[], long, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to a String

dump(InputStream, PrintStream, int, int) - Static method in class loci.poi.util.HexDump

Dumps bytesToDump bytes to an output stream.

dump() - Method in class mdbtools.dbengine.MemoryData

dumpDrawingGroupRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Spits out a list of all the drawing records in the workbook.

dumpDrawingRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Aggregates the drawing records and dumps the escher record hierarchy to the standard output.

dumpOld(long, InputStream, PrintStream) - Method in class loci.poi.ddf.EscherDump

This version of dump is a translation from the open office escher dump routine.

dumpXML() - Method in class loci.formats.ome.AbstractOMEXMLMetadata

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in interface loci.formats.ome.OMEXMLMetadata

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in class loci.formats.ome.OMEXMLMetadataImpl

dumpXML(String, Document, Element) - Static method in class ome.scifio.xml.XMLTools

Dumps the given OME-XML DOM tree to a string.

dumpXML(String, Document, Element, boolean) - Static method in class ome.scifio.xml.XMLTools

Dumps the given OME-XML DOM tree to a string.

duplicate(Class<? extends IFormatReader>) - Method in class loci.formats.ReaderWrapper

Performs a deep copy of the reader, including nested wrapped readers.

duplicate(Class<? extends IFormatWriter>) - Method in class loci.formats.WriterWrapper

Performs a deep copy of the writer, including nested wrapped writers.

duplicate() - Method in class loci.plugins.util.RecordedImageProcessor

DV_MAGIC_BYTES_1 - Static variable in class loci.formats.in.DeltavisionReader

DV_MAGIC_BYTES_2 - Static variable in class loci.formats.in.DeltavisionReader

dwt - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Reference to the DWT module

E

ealDE - Variable in class loci.formats.in.SDTInfo

EBCOTRateAllocator - Class in jj2000.j2k.entropy.encoder

This implements the EBCOT post compression rate allocation algorithm.

EBCOTRateAllocator(CodedCBlkDataSrcEnc, LayersInfo, CodestreamWriter, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Initializes the EBCOT rate allocator of entropy coded data.

ECAT7_MAGIC - Static variable in class loci.formats.in.Ecat7Reader

Ecat7Reader - Class in loci.formats.in

Ecat7Reader is the file format reader for ECAT 7 files.

Ecat7Reader() - Constructor for class loci.formats.in.Ecat7Reader

Constructs a new ECAT7 reader.

ecopts - Variable in class jj2000.j2k.decoder.DecoderSpecs

The Entropy decoder options specifications

ECS_GRAY - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

ECS_sRGB - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

The enumerated color space defined in JP2 file format.

ECS_YCC - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

EditTiffG - Class in loci.formats.tools

Provides a GUI for editing TIFF file comments.

EditTiffG() - Constructor for class loci.formats.tools.EditTiffG

EFBiffViewer - Class in loci.poi.hssf.dev

EFBiffViewer() - Constructor for class loci.poi.hssf.dev.EFBiffViewer

Creates a new instance of EFBiffViewer

elementInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

Ellipse - Class in ome.xml.model

Ellipse() - Constructor for class ome.xml.model.Ellipse

Default constructor.

Ellipse(Element, OMEModel) - Constructor for class ome.xml.model.Ellipse

Constructs Ellipse recursively from an XML DOM tree.

Ellipse(Ellipse) - Constructor for class ome.xml.model.Ellipse

Copy constructor.

EM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the electron microscopy domain.

EmbeddedObjectRefSubRecord - Class in loci.poi.hssf.record

A sub-record within the OBJ record which stores a reference to an object stored in a separate entry within the OLE2 compound file.

EmbeddedObjectRefSubRecord() - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

EmbeddedObjectRefSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Constructs an EmbeddedObjectRef record and sets its fields appropriately.

EmissionFilterRef - Class in ome.xml.model

EmissionFilterRef() - Constructor for class ome.xml.model.EmissionFilterRef

Default constructor.

EmissionFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.EmissionFilterRef

Constructs EmissionFilterRef recursively from an XML DOM tree.

EmissionFilterRef(EmissionFilterRef) - Constructor for class ome.xml.model.EmissionFilterRef

Copy constructor.

EMPTY_INTERPOLATED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

EMPTY_NOT_PLOTTED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

EMPTY_ZERO - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

emWavelength - Variable in class loci.formats.in.BaseZeissReader

enableIJLogging(boolean) - Static method in class ome.scifio.common.DebugTools

enableIJLogging(boolean, Appender<ILoggingEvent>) - Static method in class ome.scifio.common.LogbackTools

enableLogging(String) - Static method in class loci.common.DebugTools

Attempts to enable SLF4J logging via Logback without an external configuration file.

enableLogging(String) - Static method in class ome.scifio.common.DebugTools

Attempts to enable SLF4J logging via logback without an external configuration file.

enableLogging(String) - Static method in class ome.scifio.common.Log4jTools

Attempts to enable SLF4J logging via log4j without an external configuration file.

enableLogging(String) - Static method in class ome.scifio.common.LogbackTools

Attempts to enable SLF4J logging via logback without an external configuration file.

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Encodes the supplied image data, writing to the currently set ImageOutputStream.

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor

encode(int, int, int, BitOutputBuffer) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Encodes information for the specified element of the tree, given the threshold and sends it to the 'out' stream.

encode1D(byte[], int, int, int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

One-dimensionally encode a row of data using CCITT Huffman compression.

encodeMainHeader() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Write main header.

encodePacket(int, int, int, int, CBlkRateDistStats[][], int[][], BitOutputBuffer, byte[], int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Encodes a packet and returns the buffer containing the encoded packet header.

encodeRLE(byte[], int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor

Encode a row of data using Modified Huffman Compression also known as CCITT RLE (Run Lenth Encoding).

encodeT4(boolean, boolean, byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

Encode a buffer of data using CCITT T.4 Compression also known as Group 3 facsimile compression.

encodeT6(byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor

Encode a buffer of data using CCITT T.6 Compression also known as Group 4 facsimile compression.

encodeTilePartHeader(int, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes tile-part header.

ENCODING - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

ENCODING - Static variable in class loci.common.Constants

ENCODING - Static variable in class ome.scifio.common.Constants

encoding - Variable in class ome.scifio.io.RandomAccessInputStream

ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

POI will now properly handle unicode strings without forceing an encoding

ENCODING_UNCHANGED - Static variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

POI will now properly handle unicode strings without forceing an encoding

end - Variable in class loci.formats.Modulo

END_OF_CHAIN - Static variable in interface loci.poi.poifs.common.POIFSConstants

endDocument() - Method in class loci.formats.in.ND2Handler

endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the end double underline

endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the end double underline

endElement(String, String, String) - Method in class loci.formats.in.FlexReader.FlexHandler

endElement(String, String, String) - Method in class loci.formats.in.LeicaHandler

endElement(String, String, String, Attributes) - Method in class loci.formats.in.ND2Handler

endElement(String, String, String) - Method in class loci.formats.in.ZeissTIFFHandler

EndianType - Interface in jj2000.j2k.io

This interface defines constants for the two types of byte ordering: little- and big-endian.

endInsertEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

EndRecord - Class in loci.poi.hssf.record

The end record defines the end of a block of records for a (Graphing) data object.

EndRecord() - Constructor for class loci.poi.hssf.record.EndRecord

EndRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndRecord

Constructs a EndRecord record and sets its fields appropriately.

endReplacePixels() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

EndSubRecord - Class in loci.poi.hssf.record

The end data record is used to denote the end of the subrecords.

EndSubRecord() - Constructor for class loci.poi.hssf.record.EndSubRecord

EndSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndSubRecord

Constructs a End record and sets its fields appropriately.

endTime - Variable in class loci.formats.in.SDTInfo

Macro time of the last photon.

endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the end underline

endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the end underline

endWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Engine - Class in mdbtools.dbengine

Engine is the entry point into a java based database backend The datastore for the data is un-important since the engine communiates with the data via a set of defined interfaces.

Engine() - Constructor for class mdbtools.dbengine.Engine

ensureCapacity(int) - Method in class loci.common.IniList

entriesPerBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock

entriesPerXBATBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock

EntropyCoder - Class in jj2000.j2k.entropy.encoder

This abstract class provides the general interface for block-based entropy encoders.

EntropyCoder(CBlkQuantDataSrcEnc) - Constructor for class jj2000.j2k.entropy.encoder.EntropyCoder

Initializes the source of quantized wavelet coefficients.

EntropyDecoder - Class in jj2000.j2k.entropy.decoder

This is the abstract class from which all entropy decoders must inherit.

EntropyDecoder(CodedCBlkDataSrcDec) - Constructor for class jj2000.j2k.entropy.decoder.EntropyDecoder

Initializes the source of compressed data.

Entry - Interface in loci.poi.poifs.filesystem

This interface provides access to an object managed by a Filesystem instance.

entry - Variable in class mdbtools.libmdb.MdbTableDef

EntryNode - Class in loci.poi.poifs.filesystem

Abstract implementation of Entry Extending classes should override isDocument() or isDirectory(), as appropriate Extending classes must override isDeleteOK()

EntryNode(Property, DirectoryNode) - Constructor for class loci.poi.poifs.filesystem.EntryNode

create a DocumentNode.

entrySet() - Method in class loci.common.IniTable

entrySet() - Method in class loci.poi.util.BinaryTree

Returns a set view of the mappings contained in this map.

entrySetByValue() - Method in class loci.poi.util.BinaryTree

Returns a set view of the mappings contained in this map.

entryToString(Object, String) - Static method in class loci.formats.tools.AmiraParameters

Enumeration - Interface in ome.xml.model.enums

Abstract superclass for all enumerations.

EnumerationException - Exception in ome.xml.model.enums

EnumerationException is the exception thrown when an enumeration is invalid or not found.

EnumerationException() - Constructor for exception ome.xml.model.enums.EnumerationException

EnumerationException(String) - Constructor for exception ome.xml.model.enums.EnumerationException

EnumerationException(String, Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException

EnumerationException(Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException

EnumException - Exception in loci.common.enumeration

A legacy wrapper class for ome.scifio.enumeration.EnumException.

EnumException() - Constructor for exception loci.common.enumeration.EnumException

EnumException(String) - Constructor for exception loci.common.enumeration.EnumException

EnumException(String, Throwable) - Constructor for exception loci.common.enumeration.EnumException

EnumException(Throwable) - Constructor for exception loci.common.enumeration.EnumException

EnumException - Exception in ome.scifio.enumeration

Source code: Trac, Gitweb

EnumException() - Constructor for exception ome.scifio.enumeration.EnumException

EnumException(String) - Constructor for exception ome.scifio.enumeration.EnumException

EnumException(String, Throwable) - Constructor for exception ome.scifio.enumeration.EnumException

EnumException(Throwable) - Constructor for exception ome.scifio.enumeration.EnumException

ENVELOPE_10_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

ENVELOPE_CS_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

ENVELOPE_DL_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

ENVELOPE_MONARCH_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

EOC - Static variable in interface jj2000.j2k.codestream.Markers

End of codestream (EOC): 0xFFD9

eof() - Method in class loci.poi.poifs.storage.RawDataBlock

When we read the data, did we hit end of file?

EOF_ERROR_MSG - Static variable in class loci.common.AbstractNIOHandle

Error message to be used when instantiating an EOFException.

EOF_ERROR_MSG - Static variable in class ome.scifio.io.AbstractNIOHandle

Error message to be used when instantiating an EOFException.

eofLoc - Variable in class loci.poi.hssf.model.Sheet

EOFRecord - Class in loci.poi.hssf.record

End Of File record.

EOFRecord() - Constructor for class loci.poi.hssf.record.EOFRecord

EOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EOFRecord

Constructs a EOFRecord record and sets its fields appropriately.

EOI - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

EOL - Static variable in class loci.poi.util.HexDump

EPH - Static variable in interface jj2000.j2k.codestream.Markers

End of packet header (EPH): 0xFF92

EPH_LENGTH - Static variable in interface jj2000.j2k.codestream.Markers

Length of EPH marker (in bytes)

ephs - Variable in class jj2000.j2k.decoder.DecoderSpecs

The End of Packet Headers (EPH) markers specifications

EPOCH_DIFF - Static variable in class loci.poi.hpsf.Util

The difference between the Windows epoch (1601-01-01 00:00:00) and the Unix epoch (1970-01-01 00:00:00) in milliseconds: 11644473600000L.

EPSILON - Static variable in class loci.common.Constants

EPSILON - Static variable in class ome.scifio.common.Constants

EPSReader - Class in loci.formats.in

Reader is the file format reader for Encapsulated PostScript (EPS) files.

EPSReader() - Constructor for class loci.formats.in.EPSReader

Constructs a new EPS reader.

EPSWriter - Class in loci.formats.out

EPSWriter is the file format writer for Encapsulated PostScript (EPS) files.

EPSWriter() - Constructor for class loci.formats.out.EPSWriter

epxDiv - Variable in class loci.formats.in.SDTInfo

equal(byte[], byte[]) - Static method in class loci.poi.hpsf.Util

Checks whether two byte arrays a and b are equal.

EqualPtg - Class in loci.poi.hssf.record.formula

EqualPtg() - Constructor for class loci.poi.hssf.record.formula.EqualPtg

Creates new AddPtg

EqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.EqualPtg

equalReaders(IFormatReader, IFormatReader) - Static method in class loci.formats.FormatTools

Check if the two given readers are equal.

equals(Object) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

equals(Object) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Tests if the 'obj' object is the same filter as this one.

equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Tests if the 'obj' object is the same filter as this one.

equals(Object) - Method in class loci.common.AbstractNIOHandle

equals(Object) - Method in class loci.common.adapter.CodedEnumAdapter.LegacyWrapper

equals(Object) - Method in class loci.common.adapter.CodedEnumAdapter.ModernWrapper

equals(Object) - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper

equals(Object) - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper

equals(Object) - Method in class loci.common.adapter.StatusListenerAdapter.LegacyWrapper

equals(Object) - Method in class loci.common.adapter.StatusListenerAdapter.ModernWrapper

equals(Object) - Method in class loci.common.adapter.StatusReporterAdapter.LegacyWrapper

equals(Object) - Method in class loci.common.adapter.StatusReporterAdapter.ModernWrapper

equals(Object) - Method in class loci.common.CBZip2InputStream

equals(Object) - Method in class loci.common.CRC

equals(Object) - Method in exception loci.common.enumeration.EnumException

equals(Object) - Method in class loci.common.FileHandle

equals(Object) - Method in exception loci.common.HandleException

equals(Object) - Method in class loci.common.IniList

equals(Object) - Method in class loci.common.IniParser

equals(Object) - Method in class loci.common.IniTable

equals(Object) - Method in class loci.common.IniWriter

equals(Object) - Method in class loci.common.Location

equals(Object) - Method in class loci.common.RandomAccessInputStream

equals(Object) - Method in class loci.common.RandomAccessOutputStream

equals(Object) - Method in class loci.common.ReflectedUniverse

equals(Object) - Method in exception loci.common.ReflectException

equals(Object) - Method in class loci.common.Region

equals(Object) - Method in class loci.common.StreamHandle

equals(Object) - Method in class loci.common.xml.BaseHandler

equals(Object) - Method in class loci.common.xml.ParserErrorHandler

equals(Object) - Method in class loci.common.xml.ValidationErrorHandler

equals(Node, Node) - Method in class loci.formats.services.OMEXMLServiceImpl

Compares two Elements for equality.

equals(Object) - Method in class loci.formats.tiff.TiffRational

Indicates whether some other object is "equal to" this one.

equals(Object) - Method in class loci.plugins.config.FormatEntry

equals(Object) - Method in class loci.plugins.prefs.OptionsList

equals(Object) - Method in class loci.poi.ddf.EscherComplexProperty

Determine whether this property is equal to another property.

equals(Object) - Method in class loci.poi.ddf.EscherSimpleProperty

Returns true if one escher property is equal to another.

equals(Object) - Method in class loci.poi.hpsf.ClassID

Checks whether this ClassID is equal to another object.

equals(Object) - Method in class loci.poi.hpsf.Property

Compares two properties.

equals(Object) - Method in class loci.poi.hpsf.PropertySet

Returns true if the PropertySet is equal to the specified parameter, else false.

equals(Object) - Method in class loci.poi.hpsf.Section

Checks whether this section is equal to another object.

equals(Object) - Method in class loci.poi.hpsf.SpecialPropertySet

equals(Collection, Collection) - Static method in class loci.poi.hpsf.Util

Checks whether two collections are equal.

equals(Object[], Object[]) - Static method in class loci.poi.hpsf.Util

Compares to object arrays with regarding the objects' order.

equals(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

equals(Object) - Method in class loci.poi.hssf.record.BlankRecord

equals(Object) - Method in class loci.poi.hssf.record.BoolErrRecord

equals(Object) - Method in class loci.poi.hssf.record.formula.Area3DPtg

equals(Object) - Method in class loci.poi.hssf.record.FormulaRecord

equals(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord

equals(Object) - Method in class loci.poi.hssf.record.NumberRecord

equals(Object) - Method in class loci.poi.hssf.record.RowRecord

equals(Object) - Method in class loci.poi.hssf.record.SSTRecord

equals(Object) - Method in class loci.poi.hssf.record.UnicodeString

Our handling of equals is inconsistent with compareTo.

equals(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow

equals(Region) - Method in class loci.poi.hssf.util.Region

equals(Object) - Method in class loci.poi.poifs.filesystem.DocumentDescriptor

equality.

equals(Object) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

equality.

equals(Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

Object equality, implemented as object identity

equals(Object) - Method in class loci.poi.util.DoubleList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.poi.util.IntList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.poi.util.ShortList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.tests.testng.Configuration

equals(Object) - Method in class mdbtools.dbengine.sql.Condition

EQUALS - Static variable in class mdbtools.dbengine.sql.Equation

equals(Object) - Method in class mdbtools.dbengine.sql.Equation

equals(Object) - Method in class mdbtools.dbengine.sql.FQColumn

equals(Object) - Method in class mdbtools.dbengine.sql.Join

equals(Object) - Method in class ome.scifio.common.Region

equals(Object) - Method in class ome.scifio.io.Location

equals(Object) - Method in class ome.xml.model.primitives.PrimitiveType

equalsContents(Object) - Method in class loci.poi.hpsf.CustomProperty

Compares two custom properties for equality.

equalStrips - Variable in class loci.formats.in.MinimalTiffReader

Equation - Class in mdbtools.dbengine.sql

Equation() - Constructor for class mdbtools.dbengine.sql.Equation

ERFListener - Interface in loci.poi.hssf.eventmodel

An ERFListener is registered with the EventRecordFactory.

erode() - Method in class loci.plugins.util.RecordedImageProcessor

ERROR - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

error(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler

error(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler

ERROR - Static variable in class loci.poi.util.POILogger

error(SAXParseException) - Method in class ome.scifio.xml.ParserErrorHandler

error(SAXParseException) - Method in class ome.scifio.xml.ValidationErrorHandler

ERROR_DIV_0 - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NA - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NAME - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NULL - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NUM - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_REF - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_VALUE - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ErrPtg - Class in loci.poi.hssf.record.formula

ErrPtg() - Constructor for class loci.poi.hssf.record.formula.ErrPtg

Creates new ErrPtg

ErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ErrPtg

ers - Variable in class jj2000.j2k.decoder.DecoderSpecs

The error resilience specifications concerning the entropy decoder

ERS_SEG_SYMBOLS - Static variable in interface jj2000.j2k.codestream.Markers

The "segmentation symbols used" flag within Sers: 2

ERS_SOP - Static variable in interface jj2000.j2k.codestream.Markers

The "SOP marker segments used" flag within Sers: 1

escapeXML(String) - Static method in class loci.common.xml.XMLTools

Escape special characters.

escapeXML(String) - Static method in class ome.scifio.xml.XMLTools

Escape special characters.

EscherAggregate - Class in loci.poi.hssf.record

This class is used to aggregate the MSODRAWING and OBJ record combinations.

EscherAggregate(DrawingManager2) - Constructor for class loci.poi.hssf.record.EscherAggregate

EscherArrayProperty - Class in loci.poi.ddf

Escher array properties are the most wierd construction ever invented with all sorts of special cases.

EscherArrayProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty

EscherArrayProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty

EscherBitmapBlip - Class in loci.poi.ddf

EscherBitmapBlip() - Constructor for class loci.poi.ddf.EscherBitmapBlip

EscherBlipRecord - Class in loci.poi.ddf

EscherBlipRecord() - Constructor for class loci.poi.ddf.EscherBlipRecord

EscherBlipWMFRecord - Class in loci.poi.ddf

The blip record is used to hold details about large binary objects that occur in escher such as JPEG, GIF, PICT and WMF files.

EscherBlipWMFRecord() - Constructor for class loci.poi.ddf.EscherBlipWMFRecord

EscherBoolProperty - Class in loci.poi.ddf

Represents a boolean property.

EscherBoolProperty(short, int) - Constructor for class loci.poi.ddf.EscherBoolProperty

Create an instance of an escher boolean property.

EscherBSERecord - Class in loci.poi.ddf

The BSE record is related closely to the EscherBlipRecord and stores extra information about the blip.

EscherBSERecord() - Constructor for class loci.poi.ddf.EscherBSERecord

EscherChildAnchorRecord - Class in loci.poi.ddf

The escher child achor record is used to specify the position of a shape under an existing group.

EscherChildAnchorRecord() - Constructor for class loci.poi.ddf.EscherChildAnchorRecord

EscherClientAnchorRecord - Class in loci.poi.ddf

The escher client anchor specifies which rows and cells the shape is bound to as well as the offsets within those cells.

EscherClientAnchorRecord() - Constructor for class loci.poi.ddf.EscherClientAnchorRecord

EscherClientDataRecord - Class in loci.poi.ddf

The EscherClientDataRecord is used to store client specific data about the position of a shape within a container.

EscherClientDataRecord() - Constructor for class loci.poi.ddf.EscherClientDataRecord

EscherComplexProperty - Class in loci.poi.ddf

A complex property differs from a simple property in that the data can not fit inside a 32 bit integer.

EscherComplexProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty

Create a complex property using the property id and a byte array containing the complex data value.

EscherComplexProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty

Create a complex property using the property number, a flag to indicate whether this is a blip reference and the complex property data.

EscherContainerRecord - Class in loci.poi.ddf

Escher container records store other escher records as children.

EscherContainerRecord() - Constructor for class loci.poi.ddf.EscherContainerRecord

EscherDggRecord - Class in loci.poi.ddf

This record defines the drawing groups used for a particular sheet.

EscherDggRecord() - Constructor for class loci.poi.ddf.EscherDggRecord

EscherDggRecord.FileIdCluster - Class in loci.poi.ddf

EscherDggRecord.FileIdCluster(int, int) - Constructor for class loci.poi.ddf.EscherDggRecord.FileIdCluster

EscherDgRecord - Class in loci.poi.ddf

This record simply holds the number of shapes in the drawing group and the last shape id used for this drawing group.

EscherDgRecord() - Constructor for class loci.poi.ddf.EscherDgRecord

EscherDump - Class in loci.poi.ddf

Used to dump the contents of escher records to a PrintStream.

EscherDump() - Constructor for class loci.poi.ddf.EscherDump

EscherGraphics - Class in loci.poi.hssf.usermodel

Translates Graphics calls into escher calls.

EscherGraphics(HSSFShapeGroup, HSSFWorkbook, Color, float) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics

Construct an escher graphics object.

EscherGraphics2d - Class in loci.poi.hssf.usermodel

Translates Graphics2d calls into escher calls.

EscherGraphics2d(EscherGraphics) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics2d

Constructs one escher graphics object from an escher graphics object.

EscherMetafileBlip - Class in loci.poi.ddf

EscherMetafileBlip() - Constructor for class loci.poi.ddf.EscherMetafileBlip

EscherOptRecord - Class in loci.poi.ddf

The opt record is used to store property values for a shape.

EscherOptRecord() - Constructor for class loci.poi.ddf.EscherOptRecord

EscherPictBlip - Class in loci.poi.ddf

EscherPictBlip() - Constructor for class loci.poi.ddf.EscherPictBlip

EscherProperties - Class in loci.poi.ddf

Provides a list of all known escher properties including the description and type.

EscherProperties() - Constructor for class loci.poi.ddf.EscherProperties

EscherProperty - Class in loci.poi.ddf

This is the abstract base class for all escher properties.

EscherProperty(short) - Constructor for class loci.poi.ddf.EscherProperty

The id is distinct from the actual property number.

EscherProperty(short, boolean, boolean) - Constructor for class loci.poi.ddf.EscherProperty

Constructs a new escher property.

EscherPropertyFactory - Class in loci.poi.ddf

Generates a property given a reference into the byte array storing that property.

EscherPropertyFactory() - Constructor for class loci.poi.ddf.EscherPropertyFactory

EscherPropertyMetaData - Class in loci.poi.ddf

This class stores the type and description of an escher property.

EscherPropertyMetaData(String) - Constructor for class loci.poi.ddf.EscherPropertyMetaData

EscherPropertyMetaData(String, byte) - Constructor for class loci.poi.ddf.EscherPropertyMetaData

EscherRecord - Class in loci.poi.ddf

The base abstract record from which all escher records are defined.

EscherRecord() - Constructor for class loci.poi.ddf.EscherRecord

Create a new instance

EscherRecordFactory - Interface in loci.poi.ddf

The escher record factory interface allows for the creation of escher records from a pointer into a data array.

EscherRGBProperty - Class in loci.poi.ddf

A color property.

EscherRGBProperty(short, int) - Constructor for class loci.poi.ddf.EscherRGBProperty

EscherSerializationListener - Interface in loci.poi.ddf

Interface for listening to escher serialization events.

EscherShapePathProperty - Class in loci.poi.ddf

Defines the constants for the various possible shape paths.

EscherShapePathProperty(short, int) - Constructor for class loci.poi.ddf.EscherShapePathProperty

EscherSimpleProperty - Class in loci.poi.ddf

A simple property is of fixed length and as a property number in addition to a 32-bit value.

EscherSimpleProperty(short, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty

The id is distinct from the actual property number.

EscherSimpleProperty(short, boolean, boolean, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty

Constructs a new escher property.

EscherSpgrRecord - Class in loci.poi.ddf

The spgr record defines information about a shape group.

EscherSpgrRecord() - Constructor for class loci.poi.ddf.EscherSpgrRecord

EscherSplitMenuColorsRecord - Class in loci.poi.ddf

A list of the most recently used colours for the drawings contained in this document.

EscherSplitMenuColorsRecord() - Constructor for class loci.poi.ddf.EscherSplitMenuColorsRecord

EscherSpRecord - Class in loci.poi.ddf

Together the the EscherOptRecord this record defines some of the basic properties of a shape.

EscherSpRecord() - Constructor for class loci.poi.ddf.EscherSpRecord

EscherTextboxRecord - Class in loci.poi.ddf

Holds data from the parent application.

EscherTextboxRecord() - Constructor for class loci.poi.ddf.EscherTextboxRecord

evalFile(String) - Method in class loci.formats.in.ZeissTIFFReader

Evaluate the metadata of a TIFF/XML file collection, and return this to the user.

EventRecordFactory - Class in loci.poi.hssf.eventmodel

Event-based record factory.

EventRecordFactory() - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory

Construct an abortable EventRecordFactory.

EventRecordFactory(boolean) - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory

Create an EventRecordFactory

ExcelExtractor - Class in loci.poi.hssf.extractor

A text extractor for Excel files.

ExcelExtractor(HSSFWorkbook) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor

ExcelExtractor(POIFSFileSystem) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor

ExcitationFilterRef - Class in ome.xml.model

ExcitationFilterRef() - Constructor for class ome.xml.model.ExcitationFilterRef

Default constructor.

ExcitationFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExcitationFilterRef

Constructs ExcitationFilterRef recursively from an XML DOM tree.

ExcitationFilterRef(ExcitationFilterRef) - Constructor for class ome.xml.model.ExcitationFilterRef

Copy constructor.

exec(String) - Method in class loci.common.ReflectedUniverse

Executes a command in the universe.

exec(String) - Method in class ome.scifio.common.ReflectedUniverse

Executes a command in the universe.

execute() - Method in class loci.plugins.in.ImportProcess

Performs the import preparation process, notifying status listeners at each step.

execute(SQL) - Method in class mdbtools.dbengine.Engine

execute is used to tell the engine to do something

execute(Object) - Method in interface mdbtools.dbengine.functions.Aggregate

execute(Object) - Method in class mdbtools.dbengine.functions.ConCat

take two strings stick them together and return the result

execute(Object) - Method in class mdbtools.dbengine.functions.Count

execute(Object) - Method in interface mdbtools.dbengine.functions.Function

given the data for a column execute the function

execute(Object) - Method in class mdbtools.dbengine.functions.Length

execute the length function of a string

execute(Object) - Method in class mdbtools.dbengine.functions.Lower

convert column to lowercase

execute(Object) - Method in class mdbtools.dbengine.functions.Max

execute(Object) - Method in class mdbtools.dbengine.functions.Min

execute(Object) - Method in class mdbtools.dbengine.functions.Sum

execute(Object) - Method in class mdbtools.dbengine.functions.Upper

convert column to uppercase

execute() - Method in class mdbtools.dbengine.SelectEngine

executeCommand(String) - Method in class loci.formats.itk.ITKBridgePipes

Executes the given command line.

EXECUTIVE_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

EXIF - Static variable in class loci.formats.tiff.IFD

EXIF_VERSION - Static variable in class loci.formats.tiff.IFD

EXIF_VERSION_2_1 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

An array of bytes containing the values {'0', '2', '1', '0'} to be used with the "EXIFVersion" tag to indicate EXIF version 2.1.

EXIF_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

An array of bytes containing the values {'0', '2', '2', '0'} to be used with the "EXIFVersion" tag to indicate EXIF version 2.2.

EXIFGPSTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF GPS Info IFD.

EXIFInteroperabilityTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF Interoperability IFD.

EXIFParentTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class containing the TIFF tags used to reference the EXIF and GPS IFDs.

EXIFTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF IFD.

exists() - Method in class loci.common.Location

Returns whether or not the pathname exists.

exists() - Method in class ome.scifio.io.Location

Returns whether or not the pathname exists.

exit() - Method in class loci.formats.itk.ITKBridgePipes

exit() - Method in class loci.formats.tools.EditTiffG

exp - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

The quantization step "exponent" value, for each resolution level and subband, as it appears in the codestream.

exp() - Method in class loci.plugins.util.RecordedImageProcessor

expandCode(byte[], int, short, int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

If expanded data doesnt fit into array only what will fit is written to buf and the return value indicates how much of the expanded code has been written to the buf.

expandColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

expandRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Experiment - Class in ome.xml.model

Experiment() - Constructor for class ome.xml.model.Experiment

Default constructor.

Experiment(Element, OMEModel) - Constructor for class ome.xml.model.Experiment

Constructs Experiment recursively from an XML DOM tree.

Experiment(Experiment) - Constructor for class ome.xml.model.Experiment

Copy constructor.

Experimenter - Class in ome.xml.model

Experimenter() - Constructor for class ome.xml.model.Experimenter

Default constructor.

Experimenter(Element, OMEModel) - Constructor for class ome.xml.model.Experimenter

Constructs Experimenter recursively from an XML DOM tree.

Experimenter(Experimenter) - Constructor for class ome.xml.model.Experimenter

Copy constructor.

ExperimenterGroup - Class in ome.xml.model

ExperimenterGroup() - Constructor for class ome.xml.model.ExperimenterGroup

Default constructor.

ExperimenterGroup(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroup

Constructs ExperimenterGroup recursively from an XML DOM tree.

ExperimenterGroup(ExperimenterGroup) - Constructor for class ome.xml.model.ExperimenterGroup

Copy constructor.

ExperimenterGroupRef - Class in ome.xml.model

ExperimenterGroupRef() - Constructor for class ome.xml.model.ExperimenterGroupRef

Default constructor.

ExperimenterGroupRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroupRef

Constructs ExperimenterGroupRef recursively from an XML DOM tree.

ExperimenterGroupRef(ExperimenterGroupRef) - Constructor for class ome.xml.model.ExperimenterGroupRef

Copy constructor.

ExperimenterRef - Class in ome.xml.model

ExperimenterRef() - Constructor for class ome.xml.model.ExperimenterRef

Default constructor.

ExperimenterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterRef

Constructs ExperimenterRef recursively from an XML DOM tree.

ExperimenterRef(ExperimenterRef) - Constructor for class ome.xml.model.ExperimenterRef

Copy constructor.

ExperimentRef - Class in ome.xml.model

ExperimentRef() - Constructor for class ome.xml.model.ExperimentRef

Default constructor.

ExperimentRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimentRef

Constructs ExperimentRef recursively from an XML DOM tree.

ExperimentRef(ExperimentRef) - Constructor for class ome.xml.model.ExperimentRef

Copy constructor.

ExperimentType - Enum in ome.xml.model.enums

ExperimentTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ExperimentType.

ExperimentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

EXPIRED_QT_MSG - Static variable in class loci.formats.gui.LegacyQTTools

expiredQT - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating QuickTime for Java has expired.

Exporter - Class in loci.plugins.out

Core logic for the Bio-Formats Exporter ImageJ plugin.

Exporter(LociExporter, ImagePlus) - Constructor for class loci.plugins.out.Exporter

EXPOSURE_BIAS_VALUE - Static variable in class loci.formats.tiff.IFD

EXPOSURE_INDEX - Static variable in class loci.formats.tiff.IFD

EXPOSURE_MODE - Static variable in class loci.formats.tiff.IFD

EXPOSURE_MODE_AUTO_BRACKET - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_MODE_AUTO_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_MODE_MANUAL_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_PROGRAM - Static variable in class loci.formats.tiff.IFD

EXPOSURE_PROGRAM_ACTION_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_APERTURE_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_CREATIVE_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_LANDSCAPE_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_MANUAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_MAX_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_NORMAL_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_NOT_DEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_PORTRAIT_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_SHUTTER_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_TIME - Static variable in class loci.formats.tiff.IFD

EXIF tags.

exposureTime - Variable in class loci.formats.in.BaseZeissReader

ExpPtg - Class in loci.poi.hssf.record.formula

ExpPtg() - Constructor for class loci.poi.hssf.record.formula.ExpPtg

Creates new ExpPtg

ExpPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ExpPtg

Creates new ExpPtg

ExtendedFormatRecord - Class in loci.poi.hssf.record

Title: Extended Format Record Description: Probably one of the more complex records.

ExtendedFormatRecord() - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord

Constructor ExtendedFormatRecord

ExtendedFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord

Constructs an ExtendedFormat record and sets its fields appropriately.

ExtensionFileFilter - Class in loci.formats.gui

A file filter based on file extensions, for use with a JFileChooser.

ExtensionFileFilter(String, String) - Constructor for class loci.formats.gui.ExtensionFileFilter

Constructs a new filter that accepts the given extension.

ExtensionFileFilter(String[], String) - Constructor for class loci.formats.gui.ExtensionFileFilter

Constructs a new filter that accepts the given extensions.

extensions - Variable in class loci.plugins.macro.MacroFunctions

External - Class in ome.xml.model

External() - Constructor for class ome.xml.model.External

Default constructor.

External(Element, OMEModel) - Constructor for class ome.xml.model.External

Constructs External recursively from an XML DOM tree.

External(External) - Constructor for class ome.xml.model.External

Copy constructor.

externSheet - Variable in class loci.poi.hssf.model.Workbook

Holds the Extern Sheet with references to bound sheets

ExternSheetRecord - Class in loci.poi.hssf.record

Title: Extern Sheet

ExternSheetRecord() - Constructor for class loci.poi.hssf.record.ExternSheetRecord

ExternSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetRecord

Constructs a Extern Sheet record and sets its fields appropriately.

ExternSheetSubRecord - Class in loci.poi.hssf.record

Title: A sub Record for Extern Sheet

ExternSheetSubRecord() - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord

a Constractor for making new sub record

ExternSheetSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord

Constructs a Extern Sheet Sub Record record and sets its fields appropriately.

extHdrFields - Variable in class loci.formats.in.DeltavisionReader

Initialize an array of Extended Header Field structures.

EXTRA_SAMPLES - Static variable in class loci.formats.tiff.IFD

EXTRA_SAMPLES_ASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

EXTRA_SAMPLES_UNASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

EXTRA_SAMPLES_UNSPECIFIED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

extract(ListManagedBlock[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

create a list of SmallDocumentBlock's from raw data

extractCoreMetaData() - Method in class loci.formats.tools.AmiraParameters

extractText(byte[]) - Static method in class mdbtools.libmdb.Util

extractTilePartMarkSeg(short, RandomAccessIO, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

This method extracts a marker segment in a tile-part header and stores it into a byte buffer for the second pass.

extraLength - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

extraSamples - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the ExtraSamples tag.

ExtSSTInfoSubRecord - Class in loci.poi.hssf.record

Extended SST table info subrecord

ExtSSTInfoSubRecord() - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord

Creates new ExtSSTInfoSubRecord

ExtSSTInfoSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord

ExtSSTRecord - Class in loci.poi.hssf.record

Title: Extended Static String Table

ExtSSTRecord() - Constructor for class loci.poi.hssf.record.ExtSSTRecord

ExtSSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTRecord

Constructs a EOFRecord record and sets its fields appropriately.

exWavelength - Variable in class loci.formats.in.BaseZeissReader

F

f - Variable in class mdbtools.libmdb.MdbHandle

F_KEY - Static variable in class loci.formats.in.LiFlimReader

F_NUMBER - Static variable in class loci.formats.tiff.IFD

FacilityManager - Class in jj2000.j2k.util

This class manages common facilities for mutithreading environments, It can register different facilities for each thread, and also a default one, so that they can be referred by static methods, while possibly having different ones for different threads.

FacilityManager() - Constructor for class jj2000.j2k.util.FacilityManager

FAKE_EXT - Static variable in class loci.formats.ResourceNamer

FakeImage - Class in loci.formats.tools

Generates fake image structures.

FakeImage(Location) - Constructor for class loci.formats.tools.FakeImage

FakeReader - Class in loci.formats.in

FakeReader is the file format reader for faking input data.

FakeReader() - Constructor for class loci.formats.in.FakeReader

Constructs a new fake reader.

FALSE - Static variable in class loci.poi.hssf.record.UseSelFSRecord

falseColor - Variable in class loci.formats.CoreMetadata

Indicates whether or not we can ignore the color map (if present).

fastCodeSymbols(int, int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This method performs the coding of the symbol 'bit', using context 'ctxt', 'n' times, using the MQ-coder speedup mode if possible.

fastDecodeSymbols(int[], int, int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Decodes 'n' symbols from the bit stream using the same context 'ctxt'.

FATAL - Static variable in class loci.poi.util.POILogger

fatalError(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler

fatalError(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler

fatalError(SAXParseException) - Method in class ome.scifio.xml.ParserErrorHandler

fatalError(SAXParseException) - Method in class ome.scifio.xml.ValidationErrorHandler

FaxTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the extra tags found in a TIFF-F (RFC 2036) file.

FCS_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created in FIFO mode (setup, data blocks = Decay, FCS, FIDA, FILDA & MCS curves for each used routing channel).

fcsDecayCalc - Variable in class loci.formats.in.SDTInfo

Bit 0 = 1 - decay curve calculated.

fcsPoints - Variable in class loci.formats.in.SDTInfo

No of FCS values.

fcsType - Variable in class loci.formats.in.SDTInfo

0 - linear FCS with log binning (100 bins/log) when bit 15 = 1 (0x8000) - Multi-Tau FCS where bits 14-0 = ktau parameter.

fd - Variable in class mdbtools.libmdb.MdbFile

FEI_MAGIC_STRING - Static variable in class loci.formats.in.FEIReader

FEIReader - Class in loci.formats.in

FEIReader is the file format reader for FEI and Philips .img files.

FEIReader() - Constructor for class loci.formats.in.FEIReader

Constructs a new FEI reader.

FEITiffReader - Class in loci.formats.in

FEITiffReader is the file format reader for TIFF files produced by various FEI software.

FEITiffReader() - Constructor for class loci.formats.in.FEITiffReader

fetchBlocks(int) - Method in interface loci.poi.poifs.storage.BlockList

get the blocks making up a particular stream in the list.

fidaPoints - Variable in class loci.formats.in.SDTInfo

No of FIDA values.

fidaTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for FIDA histogram.

FIELD - Static variable in class loci.formats.ResourceNamer

field_1_gridset_flag - Variable in class loci.poi.hssf.record.GridsetRecord

field_1_num_args - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

field_1_precision - Variable in class loci.poi.hssf.record.PrecisionRecord

field_1_recalcids - Variable in class loci.poi.hssf.record.RecalcIdRecord

field_1_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_1_stream_id_offset - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_1_tabids - Variable in class loci.poi.hssf.record.TabIdRecord

field_1_zero - Variable in class loci.poi.hssf.record.IndexRecord

field_2_first_row - Variable in class loci.poi.hssf.record.IndexRecord

field_2_fnc_index - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

field_2_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_2_unknown - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_3_last_row_add1 - Variable in class loci.poi.hssf.record.IndexRecord

field_3_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_3_unicode_len - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_4_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_4_unicode_flag - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_4_zero - Variable in class loci.poi.hssf.record.IndexRecord

field_5_dbcells - Variable in class loci.poi.hssf.record.IndexRecord

field_5_ole_classname - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_5_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_6_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_6_stream_id - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_7_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_pictureData - Variable in class loci.poi.ddf.EscherBlipRecord

fifoTyp - Variable in class loci.formats.in.SDTInfo

Filament - Class in ome.xml.model

Filament() - Constructor for class ome.xml.model.Filament

Default constructor.

Filament(Element, OMEModel) - Constructor for class ome.xml.model.Filament

Constructs Filament recursively from an XML DOM tree.

Filament(Filament) - Constructor for class ome.xml.model.Filament

Copy constructor.

FilamentType - Enum in ome.xml.model.enums

FilamentTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FilamentType.

FilamentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

fildaPoints - Variable in class loci.formats.in.SDTInfo

No of FILDA values.

fildaTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for FILDA histogram.

file() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current file name

file() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current file name

File - Class in mdbtools.jdbc2

File(String) - Constructor for class mdbtools.jdbc2.File

file - Class in mdbtools.libmdb

file() - Constructor for class mdbtools.libmdb.file

file - Variable in class ome.scifio.io.NIOInputStream

The file.

file - Variable in class ome.scifio.io.RandomAccessInputStream

The file name.

file - Variable in class ome.scifio.io.StreamHandle

Name of the open stream.

FILE_SOURCE - Static variable in class loci.formats.tiff.IFD

FILE_SOURCE_DSC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FileSource" tag.

FILE_TYPE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

FileAnnotation - Class in ome.xml.model

FileAnnotation() - Constructor for class ome.xml.model.FileAnnotation

Default constructor.

FileAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.FileAnnotation

Constructs FileAnnotation recursively from an XML DOM tree.

FileAnnotation(FileAnnotation) - Constructor for class ome.xml.model.FileAnnotation

Copy constructor.

FileBitstreamReaderAgent - Class in jj2000.j2k.codestream.reader

This class reads the bit stream (with the help of HeaderDecoder for tile headers and PktDecoder for packets header and body) and retrives location of all code-block's codewords.

FileBitstreamReaderAgent(HeaderDecoder, RandomAccessIO, DecoderSpecs, J2KImageReadParamJava, boolean, HeaderInfo) - Constructor for class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads all tiles headers and keep offset of their first packet.

FileChannelImageInputStream - Class in com.sun.media.imageio.stream

A class which implements ImageInputStream using a FileChannel as the eventual data source.

FileChannelImageInputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageInputStream

Constructs a FileChannelImageInputStream from a FileChannel.

FileChannelImageOutputStream - Class in com.sun.media.imageio.stream

A class which implements ImageOutputStream using a FileChannel as the eventual data destination.

FileChannelImageOutputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageOutputStream

Constructs a FileChannelImageOutputStream from a FileChannel.

FileCodestreamWriter - Class in jj2000.j2k.codestream.writer

This class implements a CodestreamWriter for Java streams.

FileCodestreamWriter(File, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Opens the file 'file' for writing the bit stream, using the 'he' header encoder.

FileCodestreamWriter(String, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Opens the file named 'fname' for writing the bit stream, using the 'he' header encoder.

FileCodestreamWriter(OutputStream, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Uses the output stream 'os' for writing the bit stream, using the 'he' header encoder.

FileFormatBoxes - Interface in jj2000.j2k.fileformat

This class contains all the markers used in the JPEG 2000 Part I file format

FileFormatReader - Class in jj2000.j2k.fileformat.reader

This class reads the file format wrapper that may or may not exist around a valid JPEG 2000 codestream.

FileFormatReader(RandomAccessIO, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.reader.FileFormatReader

The constructor of the FileFormatReader

FileFormatWriter - Class in jj2000.j2k.fileformat.writer

This class writes the file format wrapper that may or may not exist around a valid JPEG 2000 codestream.

FileFormatWriter(File, ImageOutputStream, int, int, int, int[], int, ColorModel, SampleModel, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.writer.FileFormatWriter

The constructor of the FileFormatWriter.

fileGroupOption(String) - Method in class loci.formats.FormatReader

fileGroupOption(String) - Method in interface loci.formats.IFormatReader

Returns an int indicating that we cannot, must, or might group the files in a given dataset.

fileGroupOption(String) - Method in class loci.formats.ImageReader

fileGroupOption(String) - Method in class loci.formats.in.AFIReader

fileGroupOption(String) - Method in class loci.formats.in.AnalyzeReader

fileGroupOption(String) - Method in class loci.formats.in.APLReader

fileGroupOption(String) - Method in class loci.formats.in.BDReader

fileGroupOption(String) - Method in class loci.formats.in.BioRadReader

fileGroupOption(String) - Method in class loci.formats.in.BrukerReader

fileGroupOption(String) - Method in class loci.formats.in.CellomicsReader

fileGroupOption(String) - Method in class loci.formats.in.CellSensReader

fileGroupOption(String) - Method in class loci.formats.in.CellVoyagerReader

fileGroupOption(String) - Method in class loci.formats.in.DicomReader

fileGroupOption(String) - Method in class loci.formats.in.FlexReader

fileGroupOption(String) - Method in class loci.formats.in.FujiReader

fileGroupOption(String) - Method in class loci.formats.in.FV1000Reader

fileGroupOption(String) - Method in class loci.formats.in.HitachiReader

fileGroupOption(String) - Method in class loci.formats.in.ICSReader

fileGroupOption(String) - Method in class loci.formats.in.ImagicReader

fileGroupOption(String) - Method in class loci.formats.in.InCellReader

fileGroupOption(String) - Method in class loci.formats.in.L2DReader

fileGroupOption(String) - Method in class loci.formats.in.LeicaReader

fileGroupOption(String) - Method in class loci.formats.in.MetamorphReader

fileGroupOption(String) - Method in class loci.formats.in.MIASReader

fileGroupOption(String) - Method in class loci.formats.in.MicromanagerReader

fileGroupOption(String) - Method in class loci.formats.in.NDPIReader

fileGroupOption(String) - Method in class loci.formats.in.NDPISReader

fileGroupOption(String) - Method in class loci.formats.in.NiftiReader

fileGroupOption(String) - Method in class loci.formats.in.NRRDReader

fileGroupOption(String) - Method in class loci.formats.in.OMETiffReader

fileGroupOption(String) - Method in class loci.formats.in.OperettaReader

fileGroupOption(String) - Method in class loci.formats.in.PerkinElmerReader

fileGroupOption(String) - Method in class loci.formats.in.PrairieReader

fileGroupOption(String) - Method in class loci.formats.in.ScanrReader

fileGroupOption(String) - Method in class loci.formats.in.ScreenReader

fileGroupOption(String) - Method in class loci.formats.in.SVSReader

fileGroupOption(String) - Method in class loci.formats.in.TCSReader

fileGroupOption(String) - Method in class loci.formats.in.TillVisionReader

fileGroupOption(String) - Method in class loci.formats.in.TrestleReader

fileGroupOption(String) - Method in class loci.formats.in.VisitechReader

fileGroupOption(String) - Method in class loci.formats.in.ZeissLSMReader

fileGroupOption(String) - Method in class loci.formats.in.ZeissTIFFReader

fileGroupOption(String) - Method in class loci.formats.ReaderWrapper

fileGroupOption(String, String[]) - Method in class loci.plugins.macro.LociFunctions

FileHandle - Class in loci.common

A legacy delegator class for ome.scifio.io.FileHandle.

FileHandle(File, String) - Constructor for class loci.common.FileHandle

Creates a random access file stream to read from, and optionally to write to, the file specified by the File argument.

FileHandle(String, String) - Constructor for class loci.common.FileHandle

Creates a random access file stream to read from, and optionally to write to, a file with the specified name.

FileHandle - Class in ome.scifio.io

A wrapper for RandomAccessFile that implements the IRandomAccess interface.

FileHandle(File, String) - Constructor for class ome.scifio.io.FileHandle

Creates a random access file stream to read from, and optionally to write to, the file specified by the File argument.

FileHandle(String, String) - Constructor for class ome.scifio.io.FileHandle

Creates a random access file stream to read from, and optionally to write to, a file with the specified name.

FileHandleTest - Class in loci.tests.testng

Checks that no file handles are open after closing a reader.

FileHandleTest() - Constructor for class loci.tests.testng.FileHandleTest

FileInfo - Class in loci.formats

Encompasses basic metadata about a file.

FileInfo() - Constructor for class loci.formats.FileInfo

filename - Variable in class loci.formats.FileInfo

Absolute path to this file.

filename - Variable in class loci.formats.gui.ImageViewer

filename - Variable in class loci.formats.tiff.TiffSaver

Output filename.

filename - Variable in class mdbtools.libmdb.MdbFile

filename - Variable in class ome.scifio.io.NIOInputStream

The file name.

FILENAME_FORMAT - Static variable in class loci.common.DateTools

Human readable timestamp filename string

FILENAME_FORMAT - Static variable in class ome.scifio.common.DateTools

Human readable timestamp filename string

FilePassRecord - Class in loci.poi.hssf.record

Title: File Pass Record

FilePassRecord() - Constructor for class loci.poi.hssf.record.FilePassRecord

FilePassRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FilePassRecord

Constructs a FILEPASS record and sets its fields appropriately.

FilePattern - Class in loci.formats

FilePattern is a collection of methods for handling file patterns, a way of succinctly representing a collection of files meant to be part of the same data series.

FilePattern(Location) - Constructor for class loci.formats.FilePattern

Creates a pattern object using the given file as a template.

FilePattern(String, String) - Constructor for class loci.formats.FilePattern

Creates a pattern object using the given filename and directory path as a template.

FilePattern(String) - Constructor for class loci.formats.FilePattern

Creates a pattern object for files with the given pattern string.

FilePatternBlock - Class in loci.formats

FilePatternBlock represents a single block in a FilePattern.

FilePatternBlock(String) - Constructor for class loci.formats.FilePatternBlock

FilePatternDialog - Class in loci.plugins.in

Bio-Formats Importer file pattern dialog box.

FilePatternDialog(ImportProcess) - Constructor for class loci.plugins.in.FilePatternDialog

Creates a file pattern dialog for the Bio-Formats Importer.

fileReader - Variable in class loci.formats.gui.ImageViewer

Reader for files on disk.

files - Variable in class loci.formats.in.LeicaReader

Array of image file names.

files - Variable in class loci.formats.in.PerkinElmerReader

List of files to open.

files - Variable in class loci.formats.in.ZeissZVIReader

fileSave - Variable in class loci.formats.gui.ImageViewer

FileSharingRecord - Class in loci.poi.hssf.record

Title: FileSharing

FileSharingRecord() - Constructor for class loci.poi.hssf.record.FileSharingRecord

FileSharingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FileSharingRecord

Constructs a FileSharing record and sets its fields appropriately.

FileStitcher - Class in loci.formats

Logic to stitch together files with similar names.

FileStitcher() - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher around a new image reader.

FileStitcher(boolean) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher around a new image reader.

FileStitcher(IFormatReader) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher with the given reader.

FileStitcher(IFormatReader, boolean) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher with the given reader.

filesystem - Variable in class loci.poi.POIDocument

The open POIFS FileSystem that contains our document

filetimeToDate(int, int) - Static method in class loci.poi.hpsf.Util

Converts a Windows FILETIME into a Date.

filetimeToDate(long) - Static method in class loci.poi.hpsf.Util

Converts a Windows FILETIME into a Date.

FileTypeBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a File Type Box of JPEG JP2 file format.

FileTypeBox(int, int, int[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from the provided brand, minor version and compatibility list.

FileTypeBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from the provided byte array.

FileTypeBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from org.w3c.dom.Node.

fileView - Variable in class loci.formats.gui.ImageViewer

fileWriter - Variable in class loci.formats.gui.ImageViewer

Writer for files on disk.

fill() - Method in class loci.plugins.util.RecordedImageProcessor

fill(ImageProcessor) - Method in class loci.plugins.util.RecordedImageProcessor

FILL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

fill(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fill(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fill(List, int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

fill out a List of SmallDocumentBlocks so that it fully occupies a set of big blocks

fill3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

FILL__ANGLE - Static variable in class loci.poi.ddf.EscherProperties

FILL__BACKOPACITY - Static variable in class loci.poi.ddf.EscherProperties

FILL__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties

FILL__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties

FILL__CRMOD - Static variable in class loci.poi.ddf.EscherProperties

FILL__DZTYPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLBACKCOLOR - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLCOLOR - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLED - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLOPACITY - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLTYPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__FOCUS - Static variable in class loci.poi.ddf.EscherProperties

FILL__HEIGHT - Static variable in class loci.poi.ddf.EscherProperties

FILL__HITTESTFILL - Static variable in class loci.poi.ddf.EscherProperties

FILL__NOFILLHITTEST - Static variable in class loci.poi.ddf.EscherProperties

FILL__ORIGINX - Static variable in class loci.poi.ddf.EscherProperties

FILL__ORIGINY - Static variable in class loci.poi.ddf.EscherProperties

FILL__PATTERNTEXTURE - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTLEFT - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTRIGHT - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTTOP - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHADECOLORS - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHADEPRESET - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHADETYPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHAPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHAPEORIGINX - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHAPEORIGINY - Static variable in class loci.poi.ddf.EscherProperties

FILL__TOBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

FILL__TOLEFT - Static variable in class loci.poi.ddf.EscherProperties

FILL__TORIGHT - Static variable in class loci.poi.ddf.EscherProperties

FILL__TOTOP - Static variable in class loci.poi.ddf.EscherProperties

FILL__USERECT - Static variable in class loci.poi.ddf.EscherProperties

FILL__WIDTH - Static variable in class loci.poi.ddf.EscherProperties

FILL_ORDER - Static variable in class loci.formats.tiff.IFD

FILL_ORDER_LEFT_TO_RIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "FillOrder" tag.

FILL_ORDER_RIGHT_TO_LEFT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "FillOrder" tag.

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fillBasedOnBands(int, boolean, short[], short[], short[]) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Fills the channel definitions into the arrays based on the number of components and isPremultiplied.

fillBits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

EOL padding flag: 1 if fill bits have been added before an EOL such that the EOL ends on a byte boundary, 0 otherwise.

filled - Variable in class loci.formats.ChannelFiller

Whether to fill in the indices.

fillField(RecordInputStream) - Method in interface loci.poi.hssf.record.CustomField

Populates this fields data from the byte array passed in.

fillField(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataFormulaField

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBitmapBlip

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipWMFRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBSERecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherChildAnchorRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientAnchorRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientDataRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherContainerRecord

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDggRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDgRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherMetafileBlip

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherOptRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherPictBlip

This method deserializes the record from a byte array.

fillFields(byte[], EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord

Delegates to fillFields(byte[], int, EscherRecordFactory)

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord

The contract of this method is to deserialize an escher record including it's children.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpgrRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherTextboxRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.UnknownEscherRecord

This method deserializes the record from a byte array.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisLineFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisOptionsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisParentRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisUsedRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BackupRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BarRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BeginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BlankRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BOFRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BookBoolRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoolErrRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BottomMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoundSheetRecord

UTF8: sid + len + bof + flags + len(str) + unicode + str 2 + 2 + 4 + 2 + 1 + 1 + len(str) UNICODE: sid + len + bof + flags + len(str) + unicode + str 2 + 2 + 4 + 2 + 1 + 1 + 2 * len(str)

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcCountRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcModeRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CodepageRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ColumnInfoRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ContinueRecord

Fill the fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CountryRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DataFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DateWindow1904Record

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DBCellRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultColWidthRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DeltaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DimensionsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DrawingRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DSFRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EOFRecord

fillFields(byte[], short, int) - Method in class loci.poi.hssf.record.EscherAggregate

Unused since this is an aggregate record.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FilePassRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FileSharingRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FnGroupCountRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontBasisRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FooterRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormulaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FrameRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GridsetRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GutsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HCenterRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HeaderRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HideObjRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceEndRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceHdrRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IterationRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelSSTRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LeftMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LegendRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LineFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MergeCellsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MMSRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulBlankRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulRKRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NameRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteRecord

Read the record data from the supplied RecordInputStream

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Read the record data from the supplied RecordInputStream

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectLinkRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PageBreakRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaletteRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaneRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRev4Record

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotAreaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotGrowthRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrecisionRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintGridlinesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintHeadersRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintSetupRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectionRev4Record

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RecalcIdRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.Record

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefModeRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefreshAllRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RightMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RKRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RowRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SaveRecalcRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ScenarioProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SCLRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SelectionRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesListRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesTextRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SharedFormulaRecord

Shared formulas are to treated like unknown records, and as a result d

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SSTRecord

Fill the fields from the data

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StringRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StyleRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SupBookRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TabIdRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TickRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TopMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnicodeString

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnitsRecord

fillFields(byte[], short) - Method in class loci.poi.hssf.record.UnknownRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnknownRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UseSelFSRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ValueRangeRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.VCenterRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowOneRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowTwoRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteAccessRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WSBoolRecord

fillInIFD(IFD) - Method in class loci.formats.tiff.TiffParser

Fill in IFD entries that are stored at an arbitrary offset.

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader

fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

fillMetadataPass4(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

fillMetadataPass6(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass7(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Store basic dimensions in model

fillOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

The logical order of bits within a byte.

fillOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fillPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor

fillPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

Fills a (closed) polygon, as defined by a pair of arrays, which hold the x and y coordinates.

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

Fills a (closed) polygon, as defined by a pair of arrays, which hold the x and y coordinates.

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

FillRule - Enum in ome.xml.model.enums

FillRuleEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FillRule.

FillRuleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FillRuleEnumHandler

filter(int) - Method in class loci.plugins.util.RecordedImageProcessor

Filter - Class in ome.xml.model

Filter() - Constructor for class ome.xml.model.Filter

Default constructor.

Filter(Element, OMEModel) - Constructor for class ome.xml.model.Filter

Constructs Filter recursively from an XML DOM tree.

Filter(Filter) - Constructor for class ome.xml.model.Filter

Copy constructor.

FILTER_53 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The filter for lossless compression.

FILTER_97 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The filter for lossy compression.

FILTER_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "component default" specified filters

FILTER_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "main default" specified filters

FILTER_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "tile and component specific" specified filters

FILTER_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "tile specific default" specified filters

FilterData - Class in mdbtools.dbengine.tasks

filter a given result set by a given constraint

FilterData(Task, Object, int[]) - Constructor for class mdbtools.dbengine.tasks.FilterData

filterMetadata - Variable in class loci.formats.FormatReader

Whether or not to filter out invalid metadata.

FilterMetadata - Class in loci.formats.meta

An implementation of MetadataStore that removes unprintable characters from metadata values before storing them in a delegate MetadataStore.

FilterMetadata(MetadataStore, boolean) - Constructor for class loci.formats.meta.FilterMetadata

filterPixels(String, String, String, String, String, boolean) - Static method in class loci.ome.io.OMEUtils

Filter available pixels to match given criteria.

FilterRef - Class in ome.xml.model

FilterRef() - Constructor for class ome.xml.model.FilterRef

Default constructor.

FilterRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterRef

Constructs FilterRef recursively from an XML DOM tree.

FilterRef(FilterRef) - Constructor for class ome.xml.model.FilterRef

Copy constructor.

FilterSet - Class in ome.xml.model

FilterSet() - Constructor for class ome.xml.model.FilterSet

Default constructor.

FilterSet(Element, OMEModel) - Constructor for class ome.xml.model.FilterSet

Constructs FilterSet recursively from an XML DOM tree.

FilterSet(FilterSet) - Constructor for class ome.xml.model.FilterSet

Copy constructor.

FilterSetRef - Class in ome.xml.model

FilterSetRef() - Constructor for class ome.xml.model.FilterSetRef

Default constructor.

FilterSetRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterSetRef

Constructs FilterSetRef recursively from an XML DOM tree.

FilterSetRef(FilterSetRef) - Constructor for class ome.xml.model.FilterSetRef

Copy constructor.

FilterType - Enum in ome.xml.model.enums

FilterTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FilterType.

FilterTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilterTypeEnumHandler

FilterTypes - Interface in jj2000.j2k.wavelet

This interface defines the identifiers for the different types of filters that are supported.

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

finalize() - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Prints the timing information, if collected, and calls 'finalize' on the super class.

finalize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Prints the timing information, if collected, and calls 'finalize' on the super class.

finalize() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Prints the timing information, if collected, and calls 'finalize' on the super class.

finalize() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

findCellComment(Sheet, int, int) - Static method in class loci.poi.hssf.usermodel.HSSFCell

Cell comment finder.

FindCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

findColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Finds the first occurance of a given color

findColorIndex(PaletteBuilder.ColorNode, Color) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

findColumnIdx(int, int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

findEdges() - Method in class loci.plugins.util.RecordedImageProcessor

findEndOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

findEndOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Sheet

Returns the first occurance of a record matching a particular sid.

findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Workbook

Returns the first occurance of a record matching a particular sid.

findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Sheet

Finds the first occurance of a record matching a particular sid and returns it's position.

findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Workbook

Returns the index of a record matching a particular sid.

findFont(short, short, short, String, boolean, boolean, short, byte) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Finds a font that matches the one with the supplied attributes

findNextRecordBySid(short, int) - Method in class loci.poi.hssf.model.Workbook

Returns the next occurance of a record matching a particular sid.

findPaletteEntry(PaletteBuilder.ColorNode, int, byte[], byte[], byte[]) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

findPattern(String) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(Location) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(File) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String, String[]) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String, String[], int[]) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String[]) - Static method in class loci.formats.FilePattern

Generate a pattern from a list of file names.

findPattern(String) - Method in class loci.formats.FileStitcher

findPatterns(String) - Method in class loci.formats.FileStitcher

Finds the file pattern for the given ID, based on the state of the file stitcher.

findSeriesPatterns(String) - Static method in class loci.formats.FilePattern

findSeriesPatterns(String, String, String[]) - Static method in class loci.formats.FilePattern

findSheetNameFromExternSheet(short) - Method in class loci.poi.hssf.model.Workbook

finds the sheet name by his extern sheet index

findSimilarColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Finds the closest matching color in the custom palette.

findStartOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

findStartOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

findString(String...) - Method in class loci.common.NIOInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class loci.common.NIOInputStream

Reads or skips a string ending with one of the given terminating substrings.

findString(int, String...) - Method in class loci.common.NIOInputStream

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class loci.common.NIOInputStream

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(String...) - Method in class loci.common.RandomAccessInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class loci.common.RandomAccessInputStream

Reads or skips a string ending with one of the given terminating substrings.

findString(int, String...) - Method in class loci.common.RandomAccessInputStream

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class loci.common.RandomAccessInputStream

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(String...) - Method in class ome.scifio.io.NIOInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class ome.scifio.io.NIOInputStream

Reads or skips a string ending with one of the given terminating substrings.

findString(int, String...) - Method in class ome.scifio.io.NIOInputStream

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class ome.scifio.io.NIOInputStream

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(String...) - Method in class ome.scifio.io.RandomAccessInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class ome.scifio.io.RandomAccessInputStream

Reads or skips a string ending with one of the given terminating substrings.

findString(int, String...) - Method in class ome.scifio.io.RandomAccessInputStream

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class ome.scifio.io.RandomAccessInputStream

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

FINE_DOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

FINE_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Small fine dots

finish(ImportProcess) - Method in class loci.plugins.in.Importer

finishLengthCalculation(int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

Terminates the calculation of the required length for each coding pass.

finishPixels(int) - Method in class loci.formats.ome.OmeisImporter

Deprecated.

Instructs OMEIS to process the Pixels file corresponding to the given pixels ID.

FIRST_BYPASS_PASS_IDX - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The index of the first "raw" pass, if bypass mode is on.

FIRST_COLOR_INDEX - Static variable in class loci.poi.hssf.record.PaletteRecord

The byte index of the first color

first_data_pg - Variable in class mdbtools.libmdb.MdbTableDef

firstDataStream - Variable in class loci.formats.tools.AmiraParameters

FitsReader - Class in loci.formats.in

FitsReader is the file format reader for Flexible Image Transport System (FITS) images.

FitsReader() - Constructor for class loci.formats.in.FitsReader

Constructs a new FitsReader.

FixedField - Interface in loci.poi.util

behavior of a field at a fixed location within a byte array

FLAG_BACKGROUND - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_CHILD - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_CONNECTOR - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_DELETED - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_FLIPHORIZ - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_FLIPVERT - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_GROUP - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_HASSHAPETYPE - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_HAVEANCHOR - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_HAVEMASTER - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_OLESHAPE - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_PATRIARCH - Static variable in class loci.poi.ddf.EscherSpRecord

flags - Variable in class loci.formats.in.SDTInfo

Scan clocks bits 2-0 (frame, line, pixel), rates_read - bit 15.

FLASH - Static variable in class loci.formats.tiff.IFD

FLASH_DID_NOT_FIRE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash did not fire.

FLASH_ENERGY - Static variable in class loci.formats.tiff.IFD

FLASH_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash fired, but the strobe return status is unknown.

FLASH_MASK_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating that the flash fired.

FLASH_MASK_FUNCTION_NOT_PRESENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating no flash function present.

FLASH_MASK_MODE_AUTO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating auto mode.

FLASH_MASK_MODE_FLASH_FIRING - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating compulsory flash firing mode.

FLASH_MASK_MODE_FLASH_SUPPRESSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating compulsory flash suppression mode.

FLASH_MASK_RED_EYE_REDUCTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating red-eye reduction supported.

FLASH_MASK_RETURN_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating strobe return light detected.

FLASH_MASK_RETURN_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating strobe return light not detected.

FLASH_PIX_VERSION - Static variable in class loci.formats.tiff.IFD

FLASH_STROBE_RETURN_LIGHT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash fired, and the strobe return light was detected.

FLASH_STROBE_RETURN_LIGHT_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash fired, but the strobe return light was not detected.

flattenedResolutions - Variable in class loci.formats.FormatReader

Whether or not resolutions are flattened.

flattenHashtables() - Method in class loci.formats.FormatReader

flattenIntoHashMap() - Method in class loci.common.IniList

Flattens all of the INI tables into a single HashMap whose keys are of the format "[table name] table key".

flattenIntoHashMap() - Method in class ome.scifio.common.IniList

Flattens all of the INI tables into a single HashMap whose keys are of the format "[table name] table key".

flbckX - Variable in class loci.formats.in.SDTInfo

flbckY - Variable in class loci.formats.in.SDTInfo

FLEX - Static variable in class loci.formats.in.FlexReader

Custom IFD entry for Flex XML.

FLEX_SUFFIX - Static variable in class loci.formats.in.FlexReader

FlexReader - Class in loci.formats.in

FlexReader is a file format reader for Evotec Flex files.

FlexReader() - Constructor for class loci.formats.in.FlexReader

Constructs a new Flex reader.

FlexReader.FlexHandler - Class in loci.formats.in

SAX handler for parsing XML.

FlexReader.FlexHandler(Vector<String>, Vector<String>, MetadataStore, boolean, int) - Constructor for class loci.formats.in.FlexReader.FlexHandler

FlexReader.MeaHandler - Class in loci.formats.in

SAX handler for parsing XML from .mea files.

FlexReader.MeaHandler() - Constructor for class loci.formats.in.FlexReader.MeaHandler

FlexReader.ResHandler - Class in loci.formats.in

SAX handler for parsing XML from .res files.

FlexReader.ResHandler() - Constructor for class loci.formats.in.FlexReader.ResHandler

FlexWidgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats Flex support.

FlexWidgets() - Constructor for class loci.plugins.config.FlexWidgets

FLIM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the fluorescence-lifetime domain.

flipHorizontal() - Method in class loci.plugins.util.RecordedImageProcessor

flipVertical() - Method in class loci.plugins.util.RecordedImageProcessor

FLOAT - Static variable in class loci.formats.FormatTools

Identifies the FLOAT data type used to store pixel values.

floatsToBytes(float[], boolean) - Static method in class loci.common.DataTools

Translates an array of float values into an array of byte values.

floatsToBytes(float[], boolean) - Static method in class ome.scifio.common.DataTools

Translates an array of float values into an array of byte values.

floatToBytes(float, boolean) - Static method in class loci.common.DataTools

Translates the float value into an array of four bytes.

floatToBytes(float, boolean) - Static method in class ome.scifio.common.DataTools

Translates the float value into an array of four bytes.

floatValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a float.

FLOW_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created automatically in Continuous Flow mode measurement (no setup, only data).

FluoviewReader - Class in loci.formats.in

FluoviewReader is the file format reader for Olympus Fluoview TIFF files AND Andor Bio-imaging Division (ABD) TIFF files.

FluoviewReader() - Constructor for class loci.formats.in.FluoviewReader

Constructs a new Fluoview TIFF reader.

flush() - Method in class com.sun.media.imageio.stream.RawImageInputStream

flush() - Method in class com.sun.media.imageioimpl.common.BitFile

flush() - Method in class com.sun.media.imageioimpl.common.LZWCompressor

Indicate to compressor that no more data to go so write out any remaining buffered data.

flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

A null operation as writing is not supported.

flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

flush() - Method in interface jj2000.j2k.io.BinaryDataOutput

Any data that has been buffered must be written, and the stream should be realigned at the byte level.

flush() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Any data that has been buffered must be written (including buffering at the bit level), and the stream should be realigned at the byte level.

flush() - Method in class jj2000.j2k.util.ISRandomAccessIO

Does nothing since this class does not implement data output.

flush() - Method in interface jj2000.j2k.util.MsgLogger

Writes any buffered data from the println() method to the device.

flush() - Method in class jj2000.j2k.util.StreamMsgLogger

Writes any buffered data from the print() and println() methods to the device.

flush() - Method in class loci.common.RandomAccessOutputStream

flush() - Method in class loci.plugins.config.TextAreaWriter

Flushing a TextAreaWriter does nothing .

flush() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Flushes this output stream and forces any buffered output bytes to be written out.

flush() - Method in class ome.scifio.io.RandomAccessOutputStream

flushBefore(long) - Method in class com.sun.media.imageio.stream.RawImageInputStream

fmt - Variable in class mdbtools.libmdb.MdbHandle

FnGroupCountRecord - Class in loci.poi.hssf.record

Title: Function Group Count Record

FnGroupCountRecord() - Constructor for class loci.poi.hssf.record.FnGroupCountRecord

FnGroupCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FnGroupCountRecord

Constructs a FnGroupCount record and sets its fields appropriately.

FOCAL_LENGTH - Static variable in class loci.formats.tiff.IFD

FOCAL_LENGTH_35MM_FILM - Static variable in class loci.formats.tiff.IFD

FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class loci.formats.tiff.IFD

FOCAL_PLANE_RESOLUTION_UNIT_CENTIMETER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneXResolution" tag.

FOCAL_PLANE_RESOLUTION_UNIT_INCH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneXResolution" tag.

FOCAL_PLANE_RESOLUTION_UNIT_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneResolutionUnit" tag.

FOCAL_PLANE_X_RESOLUTION - Static variable in class loci.formats.tiff.IFD

FOCAL_PLANE_Y_RESOLUTION - Static variable in class loci.formats.tiff.IFD

focusGained(FocusEvent) - Method in class loci.plugins.in.MainDialog

Handles information pane updates when component focus changes.

focusLost(FocusEvent) - Method in class loci.plugins.in.MainDialog

font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string that represents the change in font.

font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string that represents the change in font.

FONT_ARIAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Arial font

FontBasisRecord - Class in loci.poi.hssf.record

The font basis record stores various font metrics.

FontBasisRecord() - Constructor for class loci.poi.hssf.record.FontBasisRecord

FontBasisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontBasisRecord

Constructs a FontBasis record and sets its fields appropriately.

FontDetails - Class in loci.poi.hssf.usermodel

Stores width and height details about a font.

FontDetails(String, int) - Constructor for class loci.poi.hssf.usermodel.FontDetails

Construct the font details with the given name and height.

FontFamily - Enum in ome.xml.model.enums

FontFamilyEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FontFamily.

FontFamilyEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontFamilyEnumHandler

FontIndexRecord - Class in loci.poi.hssf.record

The font index record indexes into the font table for the text record.

FontIndexRecord() - Constructor for class loci.poi.hssf.record.FontIndexRecord

FontIndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontIndexRecord

Constructs a FontIndex record and sets its fields appropriately.

FontRecord - Class in loci.poi.hssf.record

Title: Font Record - descrbes a font in the workbook (index = 0-3,5-infinity - skip 4)

FontRecord() - Constructor for class loci.poi.hssf.record.FontRecord

FontRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontRecord

Constructs a Font record and sets its fields appropriately.

fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string that represents the change in font size.

fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string that represents the change in font size.

FontStyle - Enum in ome.xml.model.enums

FontStyleEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FontStyle.

FontStyleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontStyleEnumHandler

footer - Variable in class loci.poi.hssf.model.Sheet

FooterRecord - Class in loci.poi.hssf.record

Title: Footer Record

FooterRecord() - Constructor for class loci.poi.hssf.record.FooterRecord

FooterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FooterRecord

Constructs a FooterRecord record and sets its fields appropriately.

force - Variable in class ome.scifio.common.ReflectedUniverse

Whether to force our way past restrictive access modifiers.

forEachTile(TestTools.TileLoopIteration, int, int, int, int, int, int, int) - Static method in class loci.tests.testng.TestTools

Iterates over every tile in a given pixel buffer based on the over arching dimensions and a requested maximum tile width and height.

format - Variable in class loci.formats.FormatHandler

Name of this file format.

format - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's format.

format(String, Object[]) - Static method in class loci.poi.util.StringUtil

Apply printf() like formatting to a string.

FORMAT_MASK - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData

formatDate(String, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String, boolean) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[]) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[], boolean) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String) - Static method in class ome.scifio.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String, boolean) - Static method in class ome.scifio.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[]) - Static method in class ome.scifio.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[], boolean) - Static method in class ome.scifio.common.DateTools

Formats the given date as an ISO 8601 date.

FormatEntry - Class in loci.plugins.config

A list entry for the configuration window's Formats tab.

FormatEntry(PrintWriter, Object) - Constructor for class loci.plugins.config.FormatEntry

FormatException - Exception in loci.formats

FormatException is the exception thrown when something goes wrong performing a file format operation.

FormatException() - Constructor for exception loci.formats.FormatException

FormatException(String) - Constructor for exception loci.formats.FormatException

FormatException(String, Throwable) - Constructor for exception loci.formats.FormatException

FormatException(Throwable) - Constructor for exception loci.formats.FormatException

FormatFileFilter - Class in loci.formats.gui

A file filter for a biological file format, for use with a JFileChooser.

FormatFileFilter(IFormatReader) - Constructor for class loci.formats.gui.FormatFileFilter

Constructs a new filter that accepts files of the given reader's type.

FormatFileFilter(IFormatReader, boolean) - Constructor for class loci.formats.gui.FormatFileFilter

Constructs a new filter that accepts files of the given reader's type, allowing the reader to open files only if the allowOpen flag is set.

FormatHandler - Class in loci.formats

Abstract superclass of all biological file format readers and writers.

FormatHandler(String, String) - Constructor for class loci.formats.FormatHandler

Constructs a format handler with the given name and default suffix.

FormatHandler(String, String[]) - Constructor for class loci.formats.FormatHandler

Constructs a format handler with the given name and default suffixes.

formatID - Variable in class loci.poi.hpsf.Section

The section's format ID, Section.getFormatID().

formatIterator() - Method in class loci.poi.hssf.record.UnicodeString

formatLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

FormatReader - Class in loci.formats

Abstract superclass of all biological file format readers.

FormatReader(String, String) - Constructor for class loci.formats.FormatReader

Constructs a format reader with the given name and default suffix.

FormatReader(String, String[]) - Constructor for class loci.formats.FormatReader

Constructs a format reader with the given name and default suffixes.

FormatReaderTest - Class in loci.tests.testng

TestNG tester for Bio-Formats file format readers.

FormatReaderTest(String, float, boolean) - Constructor for class loci.tests.testng.FormatReaderTest

FormatReaderTestFactory - Class in loci.tests.testng

Factory for scanning a directory structure and generating instances of FormatReaderTest based on the image files found.

FormatReaderTestFactory() - Constructor for class loci.tests.testng.FormatReaderTestFactory

FormatRecord - Class in loci.poi.hssf.record

Title: Format Record

FormatRecord() - Constructor for class loci.poi.hssf.record.FormatRecord

FormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormatRecord

Constructs a Format record and sets its fields appropriately.

FORMATS - Static variable in class loci.formats.in.GelReader

formats - Variable in class loci.poi.hssf.model.Workbook

formatText - Variable in class loci.formats.gui.PreviewPane

formatTip - Variable in class loci.formats.gui.PreviewPane

FormatTools - Class in loci.formats

A utility class for format reader and writer implementations.

FormatWriter - Class in loci.formats

Abstract superclass of all biological file format writers.

FormatWriter(String, String) - Constructor for class loci.formats.FormatWriter

Constructs a format writer with the given name and default suffix.

FormatWriter(String, String[]) - Constructor for class loci.formats.FormatWriter

Constructs a format writer with the given name and default suffixes.

FormatWriterTest - Class in loci.tests.testng

TestNG tester for Bio-Formats file format writers.

FormatWriterTest(String) - Constructor for class loci.tests.testng.FormatWriterTest

FormatWriterTestFactory - Class in loci.tests.testng

Factory for scanning a directory structure and generating instances of FormatWriterTest based on the image files found.

FormatWriterTestFactory() - Constructor for class loci.tests.testng.FormatWriterTestFactory

FORMULA_TYPE_ARRAY - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_CELL - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_CONDFOMRAT - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_NAMEDRANGE - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_SHARED - Static variable in class loci.poi.hssf.model.FormulaParser

FormulaParser - Class in loci.poi.hssf.model

This class parses a formula string into a List of tokens in RPN order.

FormulaParser(String, Workbook) - Constructor for class loci.poi.hssf.model.FormulaParser

Create the formula parser, with the string that is to be parsed against the supplied workbook.

FormulaRecord - Class in loci.poi.hssf.record

Formula Record.

FormulaRecord() - Constructor for class loci.poi.hssf.record.FormulaRecord

Creates new FormulaRecord

FormulaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormulaRecord

Constructs a Formula record and sets its fields appropriately.

FormulaRecordAggregate - Class in loci.poi.hssf.record.aggregates

The formula record aggregate is used to join together the formula record and it's (optional) string record and (optional) Shared Formula Record (template reads, excel optimization).

FormulaRecordAggregate(FormulaRecord, StringRecord) - Constructor for class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

FormulaViewer - Class in loci.poi.hssf.dev

FormulaViewer - finds formulas in a BIFF8 file and attempts to read them/display data from them.

FormulaViewer() - Constructor for class loci.poi.hssf.dev.FormulaViewer

Creates new FormulaViewer

FORW_ICT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for the Forward Irreversible Component Transformation (FORW_ICT).

FORW_RCT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for the Forward Reversible Component Transformation (FORW_RCT).

FORWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy

ForwardWT - Class in jj2000.j2k.wavelet.analysis

This abstract class represents the forward wavelet transform functional block.

ForwardWT(ImgData) - Constructor for class jj2000.j2k.wavelet.analysis.ForwardWT

Initializes this object for the specified number of tiles 'nt' and components 'nc'.

ForwCompTransf - Class in jj2000.j2k.image.forwcomptransf

This class apply component transformations to the tiles depending on user specifications.

ForwCompTransf(BlkImgDataSrc, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Constructs a new ForwCompTransf object that operates on the specified source of image data.

ForwCompTransfSpec - Class in jj2000.j2k.image.forwcomptransf

This class extends CompTransfSpec class in order to hold encoder specific aspects of CompTransfSpec.

ForwCompTransfSpec(int, int, byte, AnWTFilterSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec

Constructs a new 'ForwCompTransfSpec' for the specified number of components and tiles and the arguments of optName option.

ForwWT - Interface in jj2000.j2k.wavelet.analysis

This interface extends the WaveletTransform with the specifics of forward wavelet transforms.

ForwWTDataProps - Interface in jj2000.j2k.wavelet.analysis

This interface extends the ImgData interface with methods that are necessary for forward wavelet data (i.e.

ForwWTFull - Class in jj2000.j2k.wavelet.analysis

This class implements the ForwardWT with the full-page approach to be used either with integer or floating-point filters

ForwWTFull(BlkImgDataSrc, J2KImageWriteParamJava, int, int) - Constructor for class jj2000.j2k.wavelet.analysis.ForwWTFull

Initializes this object with the given source of image data and with all the decompositon parameters

fp - Variable in class loci.formats.AxisGuesser

File pattern identifying dimensional axis blocks.

fp - Variable in class ome.scifio.io.StreamHandle

Current position within the stream.

fps - Variable in class loci.formats.FormatWriter

Frame rate to use when writing in frames per second, if applicable.

fps - Variable in class loci.formats.gui.ImageViewer

fpsSpin - Variable in class loci.plugins.util.DataBrowser

FQColumn - Class in mdbtools.dbengine.sql

FQColumn(int, int) - Constructor for class mdbtools.dbengine.sql.FQColumn

FrameRecord - Class in loci.poi.hssf.record

The frame record indicates whether there is a border around the displayed text of a chart.

FrameRecord() - Constructor for class loci.poi.hssf.record.FrameRecord

FrameRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FrameRecord

Constructs a Frame record and sets its fields appropriately.

FREE_BYTE_COUNTS - Static variable in class loci.formats.tiff.IFD

FREE_OFFSETS - Static variable in class loci.formats.tiff.IFD

freeTree(PaletteBuilder.ColorNode) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

FREQUENCY - Static variable in class loci.formats.FormatTools

Identifies the Frequency dimensional type, representing a dimension consisting of frequencies.

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

fromCIEXYZ(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace

fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFColorConverter

Converts an RGB triple into the native color space of this TIFFColorConverter, and stores the result in the first three entries of the result array.

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

fromRGB(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace

fromString(String) - Static method in enum ome.xml.model.enums.AcquisitionMode

fromString(String) - Static method in enum ome.xml.model.enums.ArcType

fromString(String) - Static method in enum ome.xml.model.enums.Binning

fromString(String) - Static method in enum ome.xml.model.enums.Compression

fromString(String) - Static method in enum ome.xml.model.enums.ContrastMethod

fromString(String) - Static method in enum ome.xml.model.enums.Correction

fromString(String) - Static method in enum ome.xml.model.enums.DetectorType

fromString(String) - Static method in enum ome.xml.model.enums.DimensionOrder

fromString(String) - Static method in enum ome.xml.model.enums.ExperimentType

fromString(String) - Static method in enum ome.xml.model.enums.FilamentType

fromString(String) - Static method in enum ome.xml.model.enums.FillRule

fromString(String) - Static method in enum ome.xml.model.enums.FilterType

fromString(String) - Static method in enum ome.xml.model.enums.FontFamily

fromString(String) - Static method in enum ome.xml.model.enums.FontStyle

fromString(String) - Static method in enum ome.xml.model.enums.IlluminationType

fromString(String) - Static method in enum ome.xml.model.enums.Immersion

fromString(String) - Static method in enum ome.xml.model.enums.LaserMedium

fromString(String) - Static method in enum ome.xml.model.enums.LaserType

fromString(String) - Static method in enum ome.xml.model.enums.LineCap

fromString(String) - Static method in enum ome.xml.model.enums.Marker

fromString(String) - Static method in enum ome.xml.model.enums.Medium

fromString(String) - Static method in enum ome.xml.model.enums.MicrobeamManipulationType

fromString(String) - Static method in enum ome.xml.model.enums.MicroscopeType

fromString(String) - Static method in enum ome.xml.model.enums.NamingConvention

fromString(String) - Static method in enum ome.xml.model.enums.PixelType

fromString(String) - Static method in enum ome.xml.model.enums.Pulse

FT_BR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

File Type Fields

ftpIdx - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The index of the first truncation point returned

FujiReader - Class in loci.formats.in

FujiReader is the file format reader for Fuji LAS 3000 datasets.

FujiReader() - Constructor for class loci.formats.in.FujiReader

Constructs a new Fuji reader.

FuncPtg - Class in loci.poi.hssf.record.formula

FuncPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncPtg

Creates new function pointer from a byte array usually called while reading an excel file.

Function - Interface in mdbtools.dbengine.functions

All functions must implement this

functionData - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

FunctionDef - Class in mdbtools.dbengine.sql

A defination of a function, used in the parse tree

FunctionDef() - Constructor for class mdbtools.dbengine.sql.FunctionDef

FuncVarPtg - Class in loci.poi.hssf.record.formula

FuncVarPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

Creates new function pointer from a byte array usually called while reading an excel file.

FuncVarPtg(String, byte) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

Create a function ptg from a string tokenised by the parser

FV1000_MAGIC_STRING_1 - Static variable in class loci.formats.in.FV1000Reader

FV1000_MAGIC_STRING_2 - Static variable in class loci.formats.in.FV1000Reader

FV1000_SUFFIXES - Static variable in class loci.formats.in.FV1000Reader

FV1000Reader - Class in loci.formats.in

FV1000Reader is the file format reader for Fluoview FV 1000 OIB and Fluoview FV 1000 OIF files.

FV1000Reader() - Constructor for class loci.formats.in.FV1000Reader

Constructs a new FV1000 reader.

G

GAIN_CONTROL - Static variable in class loci.formats.tiff.IFD

GAIN_CONTROL_HIGH_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_HIGH_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_LOW_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_LOW_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAMMA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the third lifting step coefficient

GAMMA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the third lifting step coefficient

gamma(double) - Method in class loci.plugins.util.RecordedImageProcessor

gammaBlue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

gammaGreen - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

gammaRed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

GatanDM2Reader - Class in loci.formats.in

GatanDM2Reader is the file format reader for Gatan .dm2 files.

GatanDM2Reader() - Constructor for class loci.formats.in.GatanDM2Reader

Constructs a new Gatan .dm2 reader.

GatanReader - Class in loci.formats.in

GatanReader is the file format reader for Gatan files.

GatanReader() - Constructor for class loci.formats.in.GatanReader

Constructs a new Gatan reader.

gb - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Number of guard bits off all component in the current tile.

gbs - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of guard bits specifications

gcd(int, int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Greatest Common Divisor (GCD) of two positive integer numbers.

gcd(int[]) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Greatest Common Divisor (GCD) of several positive integer numbers.

GEL_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the gel and blot imaging domain.

GelReader - Class in loci.formats.in

GelReader is the file format reader for Molecular Dynamics GEL TIFF files.

GelReader() - Constructor for class loci.formats.in.GelReader

Constructs a new GEL reader.

GENERAL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

generateScreen(int, int, int, int, int) - Method in class loci.formats.tools.FakeImage

Creates a fake SPW file/directory structure.

genericProcessEvents(HSSFRequest, RecordInputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a DocumentInputStream into essentially Record events.

GEOMETRY__3DOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST10VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST2VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST3VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST4VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST5VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST6VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST7VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST8VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST9VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUSTVALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__BOTTOM - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__FILLOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__FILLSHADESHAPEOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__GEOTEXTOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__LEFT - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__LINEOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__RIGHT - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__SEGMENTINFO - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__SHADOWok - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__SHAPEPATH - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__TOP - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__VERTICES - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__ALIGNMENTONCURVE - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__BOLDFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__CHARBOUNDINGBOX - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__DEFAULTPOINTSIZE - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__FONTFAMILYNAME - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__HASTEXTEFFECT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__ITALICFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__KERNCHARACTERS - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__NOMEASUREALONGPATH - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__REVERSEROWORDER - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__ROTATECHARACTERS - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__RTFTEXT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__SCALETEXTONPATH - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__SHADOWFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__SMALLCAPSFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__STRETCHCHARHEIGHT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__STRETCHTOFITSHAPE - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__STRIKETHROUGHFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__TEXTSPACING - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__TIGHTORTRACK - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__UNDERLINEFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__UNICODE - Static variable in class loci.poi.ddf.EscherProperties

GeoTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in a GeoTIFF IFD.

get(int) - Method in class loci.common.IniList

get(Object) - Method in class loci.common.IniTable

get(int) - Method in class loci.formats.codec.ByteVector

get(int) - Static method in enum loci.formats.codec.CompressionType

Retrieves the compression by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.codec.JPEG2000BoxType

Retrieves the box type by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.codec.JPEG2000SegmentMarker

Retrieves the segment marker by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.tiff.IFDType

Retrieves a IFD type by reverse lookup of its "code".

get(int) - Method in class loci.formats.tiff.OnDemandLongArray

get(int) - Static method in enum loci.formats.tiff.PhotoInterp

Retrieves a photometric interpretation by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.tiff.TiffCompression

Retrieves a TIFF compression instance by code.

get(int) - Method in class loci.plugins.util.RecordedImageProcessor

get(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

get(String) - Method in class loci.poi.hpsf.CustomProperties

Gets a named value from the custom properties.

get(long) - Method in class loci.poi.hpsf.wellknown.PropertyIDMap

Gets the ID string for an ID from the PropertyIDMap.

get(byte[]) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the PropertyIDMap for a given section format ID.

get(Object) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Deprecated.

Use SectionIDMap.get(byte[]) instead!

get(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

get(Object) - Method in class loci.poi.util.BinaryTree

Returns the value to which this map maps the specified key.

get() - Method in class loci.poi.util.ByteField

get the ByteField's current value

get(int) - Method in class loci.poi.util.DoubleList

Returns the element at the specified position in this list.

get(int, int) - Method in class loci.poi.util.DoubleList2d

get() - Method in class loci.poi.util.IntegerField

get the IntegerField's current value

get(int) - Method in class loci.poi.util.IntList

Returns the element at the specified position in this list.

get(int, int) - Method in class loci.poi.util.IntList2d

get(int) - Method in class loci.poi.util.IntMapper

get(int, int) - Method in class loci.poi.util.List2d

get() - Method in class loci.poi.util.LongField

get the LongField's current value

get() - Method in class loci.poi.util.ShortField

get the ShortField's current value

get(int) - Method in class loci.poi.util.ShortList

Returns the element at the specified position in this list.

get(String) - Method in class loci.tests.testng.ConfigurationTree

Retrieves the Configuration object corresponding to the given file.

get(int) - Method in interface mdbtools.dbengine.Data

get the data at a certain column

get(int) - Method in class mdbtools.dbengine.MemoryData

get the data at a certain column

get123Prefix() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get some old holdover from lotus 123.

get16BitLookupTable() - Method in class loci.formats.ChannelFiller

get16BitLookupTable() - Method in class loci.formats.DelegateReader

get16BitLookupTable() - Method in class loci.formats.FileStitcher

get16BitLookupTable() - Method in class loci.formats.FormatReader

get16BitLookupTable() - Method in interface loci.formats.IFormatReader

Gets the 16-bit color lookup table associated with the most recently opened image.

get16BitLookupTable() - Method in class loci.formats.ImageReader

get16BitLookupTable() - Method in class loci.formats.in.BaseZeissReader

get16BitLookupTable() - Method in class loci.formats.in.DicomReader

get16BitLookupTable() - Method in class loci.formats.in.FakeReader

get16BitLookupTable() - Method in class loci.formats.in.FV1000Reader

get16BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader

get16BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader

get16BitLookupTable() - Method in class loci.formats.in.InCellReader

get16BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader

get16BitLookupTable() - Method in class loci.formats.in.JPXReader

get16BitLookupTable() - Method in class loci.formats.in.LeicaReader

get16BitLookupTable() - Method in class loci.formats.in.LIFReader

get16BitLookupTable() - Method in class loci.formats.in.MIASReader

get16BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader

get16BitLookupTable() - Method in class loci.formats.in.NativeND2Reader

get16BitLookupTable() - Method in class loci.formats.in.OMETiffReader

get16BitLookupTable() - Method in class loci.formats.in.PDSReader

get16BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader

get16BitLookupTable() - Method in class loci.formats.in.ScreenReader

get16BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader

get16BitLookupTable() - Method in class loci.formats.in.TCSReader

get16BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader

get16BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader

get16BitLookupTable() - Method in class loci.formats.in.ZipReader

get16BitLookupTable() - Method in class loci.formats.ReaderWrapper

get26Sys(String) - Method in class loci.poi.hssf.util.RangeAddress

get8BitLookupTable() - Method in class loci.formats.ChannelFiller

get8BitLookupTable() - Method in class loci.formats.DelegateReader

get8BitLookupTable() - Method in class loci.formats.FileStitcher

get8BitLookupTable() - Method in class loci.formats.FormatReader

get8BitLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Converts an IndexColorModel to a 2D byte array.

get8BitLookupTable() - Method in interface loci.formats.IFormatReader

Gets the 8-bit color lookup table associated with the most recently opened image.

get8BitLookupTable() - Method in class loci.formats.ImageReader

get8BitLookupTable() - Method in class loci.formats.in.AmiraReader

get8BitLookupTable() - Method in class loci.formats.in.APNGReader

get8BitLookupTable() - Method in class loci.formats.in.AVIReader

get8BitLookupTable() - Method in class loci.formats.in.BaseZeissReader

get8BitLookupTable() - Method in class loci.formats.in.BioRadReader

get8BitLookupTable() - Method in class loci.formats.in.BMPReader

get8BitLookupTable() - Method in class loci.formats.in.DicomReader

get8BitLookupTable() - Method in class loci.formats.in.FakeReader

get8BitLookupTable() - Method in class loci.formats.in.GIFReader

get8BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader

get8BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader

get8BitLookupTable() - Method in class loci.formats.in.InCellReader

get8BitLookupTable() - Method in class loci.formats.in.IPWReader

get8BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader

get8BitLookupTable() - Method in class loci.formats.in.JPXReader

get8BitLookupTable() - Method in class loci.formats.in.KhorosReader

get8BitLookupTable() - Method in class loci.formats.in.LeicaReader

get8BitLookupTable() - Method in class loci.formats.in.LIFReader

get8BitLookupTable() - Method in class loci.formats.in.MIASReader

get8BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader

get8BitLookupTable() - Method in class loci.formats.in.NativeND2Reader

get8BitLookupTable() - Method in class loci.formats.in.OMETiffReader

get8BitLookupTable() - Method in class loci.formats.in.OpenlabReader

get8BitLookupTable() - Method in class loci.formats.in.PCXReader

get8BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader

get8BitLookupTable() - Method in class loci.formats.in.PictReader

get8BitLookupTable() - Method in class loci.formats.in.PSDReader

get8BitLookupTable() - Method in class loci.formats.in.ScreenReader

get8BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader

get8BitLookupTable() - Method in class loci.formats.in.TargaReader

get8BitLookupTable() - Method in class loci.formats.in.TCSReader

get8BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader

get8BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader

get8BitLookupTable() - Method in class loci.formats.in.ZipReader

get8BitLookupTable() - Method in class loci.formats.ReaderWrapper

getA00() - Method in class ome.xml.model.AffineTransform

getA01() - Method in class ome.xml.model.AffineTransform

getA02() - Method in class ome.xml.model.AffineTransform

getA10() - Method in class ome.xml.model.AffineTransform

getA11() - Method in class ome.xml.model.AffineTransform

getA12() - Method in class ome.xml.model.AffineTransform

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

This method wraps the protected method abortRequested to allow the abortions be monitored by J2KReadState.

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

This method wraps the protected method abortRequested to allow the abortions be monitored by J2KRenderedImage.

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

This method wraps the protected method abortRequested to allow the abortions be monitored by J2KReadState.

getAbsoluteFile() - Method in class loci.common.Location

getAbsoluteFile() - Method in class ome.scifio.io.Location

getAbsolutePath() - Method in class loci.common.Location

getAbsolutePath() - Method in class ome.scifio.io.Location

getAbsoluteTime() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the absoluteTime associated with this Frame.

getAccessTimeMillis() - Method in class loci.tests.testng.Configuration

getAcquisitionDate() - Method in class ome.xml.model.Image

getAcquisitionMode(String) - Method in class loci.formats.FormatReader

Retrieves an AcquisitionMode enumeration value for the given String.

getAcquisitionMode() - Method in class ome.xml.model.Channel

getActiveCellCol() - Method in class loci.poi.hssf.model.Sheet

Returns the active column

getActiveCellCol() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's col

getActiveCellRef() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's reference number

getActiveCellRow() - Method in class loci.poi.hssf.model.Sheet

Returns the active row

getActiveCellRow() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's row

getActiveChannels() - Method in class loci.formats.in.PrairieMetadata

Gets the list of active channel indices, in sorted order.

getActivePane() - Method in class loci.poi.hssf.record.PaneRecord

Get the active pane field for the Pane record.

getActivePane() - Method in class loci.poi.hssf.util.PaneInformation

Returns the active pane

getActualNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the actual number of read bytes.

getActualRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the actual decoding rate in bits per pixel.

getActualSizeOfElements(short) - Static method in class loci.poi.ddf.EscherArrayProperty

Sometimes the element size is stored as a negative number.

getAdapter(Class<T>) - Static method in class loci.legacy.adapter.AdapterTools

Looks up the adapter instance

getAddMenuCount() - Method in class loci.poi.hssf.record.MMSRecord

get number of add menu options (should be 0)

getAddress() - Method in class loci.poi.hssf.util.RangeAddress

getAdjustedIndex(int) - Method in class loci.formats.FileStitcher

Gets the local reader index for use with the given image plane.

getAdjustedOrder() - Method in class loci.formats.AxisGuesser

Gets the adjusted dimension order.

getAdtlDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get for diagonal borders? No idea (its a palette color for the other function we didn't know what was?)

getAdtlDiagLineStyle() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the diagonal border line style? Who the heck ever heard of a diagonal border?

getAdtlFillPattern() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the additional fill pattern

getAdtlPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the additional palette options bitmask (see individual bit getter methods that reference this method)

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader

getAdvancedSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of FileInfo objects representing the files needed to open the current series.

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getAdvancedUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getAdvancedUsedFiles(boolean) - Method in class loci.formats.FormatReader

getAdvancedUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of FileInfo objects representing the files needed to open this dataset.

getAdvancedUsedFiles(boolean) - Method in class loci.formats.ImageReader

getAdvancedUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getAirPressure() - Method in class ome.xml.model.ImagingEnvironment

getAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the horizontal alignment of the cell.

getAlignment() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of horizontal alignment for the cell

getAlignmentOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the alignment options bitmask.

getAlignROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets alignROI

getAllChannels(boolean) - Static method in class loci.ome.io.OMEUtils

Get the channel count of every accessible image on the server.

getAllDates(boolean) - Static method in class loci.ome.io.OMEUtils

Get the creation date of each accessible image on the server.

getAllDescriptions(boolean) - Static method in class loci.ome.io.OMEUtils

Get the description of each accessible image on the server.

getAllEmbeddedObjects() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all embedded OLE2 objects from the Workbook.

getAllExperimenters(boolean) - Static method in class loci.ome.io.OMEUtils

Get the names of every experimenter in the database.

getAllHeights(boolean) - Static method in class loci.ome.io.OMEUtils

Get the height of every accessible image on the server.

getAllIDs(boolean) - Static method in class loci.ome.io.OMEUtils

Get all of the image IDs.

getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory

getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

getAllNames(boolean) - Static method in class loci.ome.io.OMEUtils

Get the name of each accessible image on the server.

getAllowedTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns a List containing the allowed TIFFTagSet objects.

getAllPictures() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all pictures from the Workbook.

getAllThumbnails(boolean) - Static method in class loci.ome.io.OMEUtils

Get the thumbnail for each accessible image on the server.

getAllTs(boolean) - Static method in class loci.ome.io.OMEUtils

Get the number of timepoints in each accessible image on the server.

getAllTypes(boolean) - Static method in class loci.ome.io.OMEUtils

Get the pixel type of each accessible image on the server.

getAllWidths(boolean) - Static method in class loci.ome.io.OMEUtils

Get the width of every accessible image on the server.

getAllZs(boolean) - Static method in class loci.ome.io.OMEUtils

Get the number of Z slices in each accessible image on the server.

getAlpha(int) - Method in class loci.formats.gui.Index16ColorModel

getAlpha(int) - Method in class loci.formats.gui.SignedColorModel

getAlpha(Object) - Method in class loci.formats.gui.SignedColorModel

getAlpha(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getAlpha(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getAlpha() - Method in class ome.xml.model.primitives.Color

Returns the alpha component of this color.

getAlphas() - Method in class loci.formats.gui.Index16ColorModel

Return the array of alpha color components.

getAlternateExpression() - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternate expression evaluation is on

getAlternateExpression() - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternate expression evaluation is on

getAlternateFormula() - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternative formula entry is on

getAlternateFormula() - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternative formula entry is on

getAlternateMD5() - Method in class loci.tests.testng.Configuration

getAmplificationGain() - Method in class ome.xml.model.Detector

getAnchor() - Method in class loci.poi.hssf.usermodel.HSSFShape

getAnchorHeightInPoints(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Calculates the height of a client anchor in points.

getAnchorId() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the anchor id field for the ObjectLink record.

getAnchorType() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Gets the anchor type

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the high-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the low-pass analysis filter.

getAnnotator() - Method in class ome.xml.model.Annotation

getAnSubbandTree(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns a reference to the root of subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns a reference to the root of subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component of the source.

getApplicationName() - Method in class loci.poi.hpsf.SummaryInformation

Returns the application name (or null).

getApproximationAccuracy() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns ApproximationAccuracy.

getArabic() - Method in class loci.poi.hssf.record.WindowTwoRecord

is this arabic?

getArcID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getArcID(int, int) - Method in class loci.formats.meta.DummyMetadata

getArcID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getArcID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getArcLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getArcLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getArcLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getArcLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getArcManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata

getArcManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata

getArcManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getArcManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getArcModel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getArcModel(int, int) - Method in class loci.formats.meta.DummyMetadata

getArcModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getArcModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getArcPower(int, int) - Method in class loci.formats.meta.AggregateMetadata

getArcPower(int, int) - Method in class loci.formats.meta.DummyMetadata

getArcPower(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getArcPower(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getArcSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getArcSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getArcSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getArcSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getArcType(String) - Method in class loci.formats.FormatReader

Retrieves an ArcType enumeration value for the given String.

getArcType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getArcType(int, int) - Method in class loci.formats.meta.DummyMetadata

getArcType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getArcType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getArea() - Method in class loci.poi.hssf.util.Region

getAreaAt(int) - Method in class loci.poi.hssf.record.MergeCellsRecord

return the MergedRegion at the given index.

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaAPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNAPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNVPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaVPtg

getAreaReference(Workbook) - Method in class loci.poi.hssf.record.NameRecord

gets the reference , the area only (range)

getArgument() - Method in class mdbtools.dbengine.sql.FunctionDef

getArray(String, int[], int[]) - Method in interface loci.formats.services.NetCDFService

Retrieves an HDF path's values.

getArray(String, int[], int[]) - Method in class loci.formats.services.NetCDFServiceImpl

getAsBytes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the data as an uninterpreted array of bytes.

getAsChars() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SHORT data as an array of chars (unsigned 16-bit integers).

getAsDouble(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a double.

getAsDoubles() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_DOUBLE data as an array of doubles (64-bit floating-point values).

getAsFloat(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a float.

getAsFloats() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_FLOAT data as an array of floats (32-bit floating-point values).

getAsInt(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as an int.

getAsInts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SLONG data as an array of ints (signed 32-bit integers).

getAsLong(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a long.

getAsLongs() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_LONG or TIFF_IFD_POINTER data as an array of longs (signed 64-bit integers).

getAsMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Converts the directory to a metadata object.

getAsNativeNode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the TIFFField as a node named either "TIFFField" or "TIFFIFD" as described in the TIFF native image metadata specification.

getAsRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_RATIONAL data item as a two-element array of ints.

getAsRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_RATIONAL data as an array of 2-element arrays of longs.

getAsShorts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SSHORT data as an array of shorts (signed 16-bit integers).

getAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the association which associates a color channel to a color component in the color space of the image.

getAsSRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_SRATIONAL data item as a two-element array of ints.

getAsSRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SRATIONAL data as an array of 2-element arrays of ints.

getAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_ASCII value as a String.

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getAttenuation() - Method in class ome.xml.model.LightSourceSettings

getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Extracts the value of the attribute from name.

getAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getAttributeDataType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeDefaultValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeDescription(String, String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeEnumerations(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeList() - Method in interface loci.formats.services.NetCDFService

Retrieves an exhaustive list of the HDF paths for all attributes in the HDF document.

getAttributeList() - Method in class loci.formats.services.NetCDFServiceImpl

getAttributeListMaxLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeListMinLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeMaxValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeMinValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributes() - Method in class loci.poi.hssf.record.FontRecord

get the font attributes (see individual bit getters that reference this method)

getAttributeValue(String) - Method in interface loci.formats.services.NetCDFService

Retrieves an attribute's value.

getAttributeValue(String) - Method in class loci.formats.services.NetCDFServiceImpl

getAttributeValueType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Returns the author (or null).

getAuthor() - Method in class loci.poi.hssf.record.NoteRecord

Name of the original comment author

getAuthor() - Method in class loci.poi.hssf.usermodel.HSSFComment

Name of the original comment author

getAutobreaks() - Method in class loci.poi.hssf.record.WSBoolRecord

show automatic page breaks or not

getAutobreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

show automatic page breaks or not

getAutoContinue() - Method in class loci.poi.hssf.record.RecordInputStream

getAutoscaleInfo() - Method in class loci.plugins.in.ImporterOptions

getAutoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

getAutoThreshold(int[]) - Method in class loci.plugins.util.RecordedImageProcessor

getAxisCount(int) - Method in class loci.formats.AxisGuesser

Gets the number of axes in the pattern of the given type.

getAxisCountC() - Method in class loci.formats.AxisGuesser

Gets the number of C axes in the pattern.

getAxisCountS() - Method in class loci.formats.AxisGuesser

Gets the number of S axes in the pattern.

getAxisCountT() - Method in class loci.formats.AxisGuesser

Gets the number of T axes in the pattern.

getAxisCountZ() - Method in class loci.formats.AxisGuesser

Gets the number of Z axes in the pattern.

getAxisGuesser() - Method in class loci.formats.FileStitcher

Gets the axis guesser object used to guess which dimensional axes are which.

getAxisType(String) - Static method in class loci.formats.AxisGuesser

Returns a best guess of the given label's axis type.

getAxisType() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Get the axis type field for the AxisLineFormat record.

getAxisType() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the axis type field for the AxisParent record.

getAxisType() - Method in class loci.poi.hssf.record.AxisRecord

Get the axis type field for the Axis record.

getAxisTypes() - Method in class loci.formats.AxisGuesser

Gets the guessed axis type for each dimensional block.

getAxisTypes() - Method in class loci.formats.FileStitcher

Gets the axis type for each dimensional block.

getBackcolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the backcolor index field for the AreaFormat record.

getBackground() - Method in class loci.poi.hssf.record.TickRecord

Get the background field for the Tick record.

getBackground() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getBackgroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the background color field for the AreaFormat record.

getBackgroundValue() - Method in class loci.plugins.util.RecordedImageProcessor

getBackup() - Method in class loci.poi.hssf.record.BackupRecord

get the backup flag

getBackupFlag() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

determine whether the Excel GUI will backup the workbook when saving.

getBackuppos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getBackupRecord() - Method in class loci.poi.hssf.model.Workbook

Returns the position of the backup record.

getBadFontHeight() - Method in class loci.poi.hssf.record.RowRecord

get whether the font and row height are not compatible

getBandSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getBarSpace() - Method in class loci.poi.hssf.record.BarRecord

Get the bar space field for the Bar record.

getBaseReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getBaseUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the base unit field for the AxisOptions record.

getBATArray() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getBATCount() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getBestIndex(Color) - Method in class loci.plugins.util.RecordedImageProcessor

getBigBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

getBigBlockSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument

getBigBlockSize() - Method in class loci.poi.poifs.storage.BATBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.DocumentBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.HeaderBlockWriter

getBigBlockSize() - Method in class loci.poi.poifs.storage.PropertyBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlockList

getBigBlockSize() - Method in class loci.poi.poifs.storage.SmallDocumentBlock

getBigEndian() - Method in class ome.xml.model.BinData

getBigEndian() - Method in class ome.xml.model.Pixels

getBinaryFile() - Method in class ome.xml.model.FileAnnotation

getBinaryFileFileName(int) - Method in class loci.formats.meta.AggregateMetadata

getBinaryFileFileName(int) - Method in class loci.formats.meta.DummyMetadata

getBinaryFileFileName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBinaryFileFileName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBinaryFileMIMEType(int) - Method in class loci.formats.meta.AggregateMetadata

getBinaryFileMIMEType(int) - Method in class loci.formats.meta.DummyMetadata

getBinaryFileMIMEType(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBinaryFileMIMEType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBinaryFileSize(int) - Method in class loci.formats.meta.AggregateMetadata

getBinaryFileSize(int) - Method in class loci.formats.meta.DummyMetadata

getBinaryFileSize(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBinaryFileSize(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBinaryOnly() - Method in class ome.xml.model.OME

getBinaryOnlyMetadataFile(int) - Method in class loci.formats.meta.AggregateMetadata

getBinaryOnlyMetadataFile(int) - Method in class loci.formats.meta.DummyMetadata

getBinaryOnlyMetadataFile(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBinaryOnlyMetadataFile(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBinaryOnlyUUID(int) - Method in class loci.formats.meta.AggregateMetadata

getBinaryOnlyUUID(int) - Method in class loci.formats.meta.DummyMetadata

getBinaryOnlyUUID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBinaryOnlyUUID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBinData() - Method in class ome.xml.model.BinaryFile

getBinData(int) - Method in class ome.xml.model.Mask

getBinData(int) - Method in class ome.xml.model.Pixels

getBinning(String) - Method in class loci.formats.FormatReader

Retrieves an Binning enumeration value for the given String.

getBinning() - Method in class loci.formats.in.MetamorphHandler

getBinning() - Method in class ome.xml.model.DetectorSettings

getBinnings() - Method in class loci.formats.in.ND2Handler

getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Returns the bit depths for all the image components.

getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the bit depth for all the image components.

getBitDepth() - Method in class loci.formats.in.PrairieMetadata

Gets the bitDepth recorded in the configuration.

getBitDepths() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the bit depths for all the color components.

getBitOffset() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getBits(int) - Method in class loci.formats.codec.BitBuffer

Returns an int value representing the value of the bits read from the byte array, from the current position.

getBitsPerPixel() - Method in class loci.formats.FileStitcher

getBitsPerPixel() - Method in class loci.formats.FormatReader

getBitsPerPixel() - Method in interface loci.formats.IFormatReader

Gets the number of valid bits per pixel.

getBitsPerPixel() - Method in class loci.formats.ImageReader

getBitsPerPixel() - Method in class loci.formats.ReaderWrapper

getBitsPerSample() - Method in class loci.formats.tiff.IFD

Retrieves the image's bits per sample (TIFF tag BitsPerSample) from a given TIFF IFD.

getBlipRecord() - Method in class loci.poi.ddf.EscherBSERecord

getBlipType(byte) - Method in class loci.poi.ddf.EscherBSERecord

Retrieve the string representation given a blip id.

getBlipTypeMacOS() - Method in class loci.poi.ddf.EscherBSERecord

The expected blip type under MacOS (failure to match this blip type will result in Excel converting to this format).

getBlipTypeWin32() - Method in class loci.poi.ddf.EscherBSERecord

The expected blip type under windows (failure to match this blip type will result in Excel converting to this format).

getBlock(int) - Method in class loci.formats.FilePattern

Gets the specified numerical block.

getBlock() - Method in class loci.formats.FilePatternBlock

getBlockAligned() - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function returns the blockAligned flag

getBlocks() - Method in class loci.formats.FilePattern

Gets each numerical block.

getBlocks() - Method in class loci.poi.poifs.storage.RawDataBlockList

getBlocks() - Method in class loci.poi.poifs.storage.SmallDocumentBlockList

getBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlock

getBlue(int) - Method in class loci.formats.gui.Index16ColorModel

getBlue(int) - Method in class loci.formats.gui.SignedColorModel

getBlue(Object) - Method in class loci.formats.gui.SignedColorModel

getBlue(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getBlue(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getBlue() - Method in class loci.poi.ddf.EscherRGBProperty

getBlue() - Method in class ome.xml.model.primitives.Color

Returns the blue component of this color.

getBlues() - Method in class loci.formats.gui.Index16ColorModel

Return the array of blue color components.

getBoldWeight() - Method in class loci.poi.hssf.record.FontRecord

get the bold weight for this font (100-1000dec or 0x64-0x3e8).

getBoldweight() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the boldness to use

getBooleanAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getBooleanAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getBooleanAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getBooleanAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBooleanAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBooleanAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getBooleanAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getBooleanAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getBooleanAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBooleanAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getBooleanAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getBooleanAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBooleanAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBooleanAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getBooleanAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getBooleanAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getBooleanAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBooleanAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getBooleanAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getBooleanAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBooleanAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBooleanAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getBooleanAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getBooleanAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBooleanAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBooleanAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getBooleanAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getBooleanAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBooleanAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBooleanAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata

getBooleanAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata

getBooleanAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve

getBooleanAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getBooleanCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a boolean.

getBooleanOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the boolean option with the given key.

getBooleanValue() - Method in class loci.poi.hssf.record.BoolErrRecord

get the value for the cell

getBorderBottom() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the bottom border

getBorderBottom() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the bottom border of the cell

getBorderLeft() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the left border

getBorderLeft() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the left border of the cell

getBorderOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the border options bitmask (see the corresponding bit getter methods that reference back to this one)

getBorderRight() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the right border

getBorderRight() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the right border of the cell

getBorderTop() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the top border

getBorderTop() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the top border of the cell

getBorderType() - Method in class loci.poi.hssf.record.FrameRecord

Get the border type field for the Frame record.

getBottomBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getBottomBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the bottom border

getBoundaryHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the boundary height of the metafile drawing commands

getBoundaryLeft() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the left boundary of the metafile drawing commands

getBoundaryTop() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the top boundary of the metafile drawing commands

getBoundaryWidth() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the boundary width of the metafile drawing commands

getBounds() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns a Rectangle indicating the image bounds.

getBounds() - Method in class loci.poi.ddf.EscherMetafileBlip

getBounds() - Method in class loci.poi.ddf.EscherPictBlip

getBoundWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFCell

Returns the Workbook that this Cell is bound to

getBoxClass(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the Box class for the box with the provided type.

getBranchIndex(Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getBrand() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the brand of this file type box.

getBreak(short) - Method in class loci.poi.hssf.record.PageBreakRecord

Retrieves the region at the row/column indicated

getBreaksIterator() - Method in class loci.poi.hssf.record.PageBreakRecord

getBSERecord(int) - Method in class loci.poi.hssf.model.Workbook

getBspos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getBubbleSeriesType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the bubble series type field for the Series record.

getBucketSSTOffset() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getBuffer() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Returns the byte buffer.

getBuffer() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the byte-buffer used to store the codestream header.

getBufferedImage() - Method in class loci.plugins.util.RecordedImageProcessor

getBufferLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the number of bytes used in the codestream header's buffer.

getBufferSize() - Method in class loci.common.NIOFileHandle

Gets the current buffer size.

getBufferSize() - Method in class ome.scifio.io.NIOFileHandle

Gets the current buffer size.

getBuild() - Method in class loci.poi.hssf.record.BOFRecord

get the build that wrote this file

getBuildDate(String[]) - Method in class loci.plugins.macro.LociFunctions

getBuildYear() - Method in class loci.poi.hssf.record.BOFRecord

Year of the build that wrote this file

getBuiltin() - Method in class loci.poi.hssf.record.StyleRecord

if this is a builtin style get the number of the built in style

getBuiltinFormat(String) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format index that matches the given format string

getBuiltinFormat(short) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format string that matches the given format index

getBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

getBuiltInName() - Method in class loci.poi.hssf.record.NameRecord

Gets the Built In Name

getBypass() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets bypass

getByte(int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Returns the byte buffered at the given position in the buffer.

getByteArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

Copy a portion of a byte array

getByteArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets the byte array from an IIOMetadataNode.

getByteBuffer() - Method in class loci.common.ByteArrayHandle

Gets the byte buffer backing this handle.

getByteBuffer() - Method in class ome.scifio.io.ByteArrayHandle

Gets the byte buffer backing this handle.

getByteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the byte count or 0 if the DocumentSummaryInformation does not contain a byte count.

getByteElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its byte value from an IIOMetadataNode.

getByteInputBuffer() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Returns the underlying 'ByteInputBuffer' from where the MQ coded input bytes are read.

getByteOrder() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getByteOrder() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "byte order" field.

getByteOrder() - Method in class loci.poi.hpsf.SpecialPropertySet

getByteOrdering() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataInput

Returns the endianess (i.e., byte ordering) of the implementing class.

getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataOutput

Returns the endianness (i.e., byte ordering) of the implementing class.

getByteOrdering() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the endianess (i.e., byte ordering) of the implementing class.

getByteOrdering() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the endianess (i.e., byte ordering) of multi-byte I/O operations.

getBytes() - Method in class loci.common.ByteArrayHandle

Gets the byte array backing this FileHandle.

getBytes(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Get the bytes from an image, merging the channels as necessary.

getBytes() - Method in class loci.poi.hpsf.ClassID

Gets the bytes making out the class ID.

getBytes() - Method in class loci.poi.hssf.record.formula.Ptg

getBytes() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Method getBytes - get the bytes of just the HSSF portions of the XLS file.

getBytes() - Method in class ome.scifio.io.ByteArrayHandle

Gets the byte array backing this FileHandle.

getBytesPerElement() - Method in enum loci.formats.tiff.IFDType

Retrieves the number of bytes per element.

getBytesPerPixel(int) - Static method in class loci.formats.FormatTools

Retrieves how many bytes per pixel the current plane or section has.

getBytesPerPixel(String) - Static method in class loci.formats.FormatTools

Retrieves the number of bytes per pixel in the current plane.

getBytesPerPixel(int) - Method in class loci.formats.in.LegacyND2Reader

getBytesPerSample() - Method in class loci.formats.tiff.IFD

Retrieves the image's bytes per sample (derived from tag BitsPerSample) from this IFD.

getC() - Method in class loci.formats.gui.ImageViewer

Gets the C value of the currently displayed image.

getCache() - Method in class loci.formats.gui.CacheComponent

getCache() - Method in class loci.plugins.util.BFVirtualStack

getCacheListeners() - Method in class loci.formats.cache.Cache

getCacheListeners() - Method in interface loci.formats.cache.CacheReporter

Gets a list of all registered status update listeners.

getCacheListeners() - Method in class loci.formats.cache.CacheStrategy

getCacheOfSavedSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the cache of the saved size

getCacheOfSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the cache of the metafile size

getCalcMode() - Method in class loci.poi.hssf.record.CalcModeRecord

get the calc mode flag for formulas

getCalibratedMagnification() - Method in class ome.xml.model.Objective

getCalibrationTable() - Method in class loci.plugins.util.RecordedImageProcessor

getCameraModel() - Method in class loci.formats.in.ND2Handler

getCanonicalFile() - Method in class loci.common.Location

getCanonicalFile() - Method in class ome.scifio.io.Location

getCanonicalPath() - Method in class loci.common.Location

Returns the canonical path to this file.

getCanonicalPath() - Method in class ome.scifio.io.Location

Returns the canonical path to this file.

getCategory() - Method in class loci.formats.in.BaseZeissReader.Tag

getCategory() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the category (or null).

getCategoryAxisCross() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the category axis cross field for the ValueRange record.

getCategoryDataType() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Get the category data type field for the DefaultDataLabelTextProperties record.

getCategoryDataType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the category data type field for the Series record.

getCategorySpace() - Method in class loci.poi.hssf.record.BarRecord

Get the category space field for the Bar record.

getCausalCXInfo() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets causalCXInfo

getCBegin(int) - Method in class loci.plugins.in.ImporterOptions

getCBegin(int) - Method in class loci.plugins.in.ImportProcess

getCBlkHeight(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the code-block height: for the specified tile/component for the specified tile for the specified component default value The value returned depends on the value of the variable 'type' which can take the following values : SPEC_DEF -> Default value is returned.

getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the code-block height for the specified tile and component.

getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the code-block height for the specified tile and component.

getCBlkInfo() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Gets the reference to the CBlkInfo array

getCBlkWidth(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the code-block width : for the specified tile/component for the specified tile for the specified component default value The value returned depends on the value of the variable 'type' which can take the following values :
SPEC_DEF -> Default value is returned.

getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the code-block width for the specified tile and component.

getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the code-block width for the specified tile and component.

getCbULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical code-block partition origin.

getCbULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the horizontal code-block partition origin.Allowable values are 0 and 1, nothing else.

getCbULX() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the horizontal code-block partition origin.

getCbULX() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the horizontal code-block partition origin.

getCbULX() - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the horizontal code-block partition origin.

getCbULX() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the horizontal code-block partition origin.

getCbULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the vertical code-block partition origin.

getCbULY() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the vertical offset of the code-block partition.

getCbULY() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the vertical code-block partition origin Allowable values are 0 and 1, nothing else.

getCCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

get the hssfcell representing a given column (logical cell) 0-based.

getCellComment() - Method in class loci.poi.hssf.usermodel.HSSFCell

Returns comment associated with this cell

getCellComment(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns cell comment for the specified row and column

getCellFormula() - Method in class loci.poi.hssf.usermodel.HSSFCell

getCellNum() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the cell's number within the row

getCellOffsetAt(int) - Method in class loci.poi.hssf.record.DBCellRecord

return the cell offset in the array

getCellOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

gets the options bitmask - you can also use corresponding option bit getters (see other methods that reference this one)

getCells() - Method in class loci.poi.hssf.util.AreaReference

return the cell references that define this area

getCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the style for the cell.

getCellStyleAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the cell style object at the given index

getCellType() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the cells type (numeric, formula or string)

getCellValueRecord() - Method in class loci.poi.hssf.usermodel.HSSFCell

Should only be used by HSSFSheet and friends.

getCEnd(int) - Method in class loci.plugins.in.ImporterOptions

getCEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCenter() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the center of the footer.

getCenter() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the center of the header.

getChannel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the defined channels.

getChannel() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the channel associated with this File.

getChannel(int) - Method in class ome.xml.model.Pixels

getChannelAcquisitionMode(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelAcquisitionMode(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelAcquisitionMode(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelAcquisitionMode(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelColors() - Method in class loci.formats.in.ND2Handler

getChannelContrastMethod(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelContrastMethod(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelContrastMethod(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelContrastMethod(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelCount() - Method in class loci.formats.in.SDTReader

Gets the number of spectral channels.

getChannelCount(int) - Method in class loci.formats.meta.AggregateMetadata

getChannelCount(int) - Method in class loci.formats.meta.DummyMetadata

getChannelCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelCount() - Method in class loci.tests.testng.Configuration

getChannelDimCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getChannelDimLength(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions

getChannelDimLengths() - Method in class loci.formats.ChannelFiller

getChannelDimLengths() - Method in class loci.formats.DimensionSwapper

getChannelDimLengths() - Method in class loci.formats.FileStitcher

getChannelDimLengths() - Method in class loci.formats.FormatReader

getChannelDimLengths() - Method in interface loci.formats.IFormatReader

Deprecated.

getChannelDimLengths() - Method in class loci.formats.ImageReader

getChannelDimLengths() - Method in class loci.formats.in.ICSReader

getChannelDimLengths() - Method in class loci.formats.ReaderWrapper

getChannelDimType(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions

getChannelDimTypes() - Method in class loci.formats.ChannelFiller

getChannelDimTypes() - Method in class loci.formats.DimensionSwapper

getChannelDimTypes() - Method in class loci.formats.FileStitcher

getChannelDimTypes() - Method in class loci.formats.FormatReader

getChannelDimTypes() - Method in interface loci.formats.IFormatReader

Deprecated.

getChannelDimTypes() - Method in class loci.formats.ImageReader

getChannelDimTypes() - Method in class loci.formats.in.ICSReader

getChannelDimTypes() - Method in class loci.formats.ReaderWrapper

getChannelEmissionWavelength(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelEmissionWavelength(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelEmissionWavelength(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelEmissionWavelength(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelExcitationWavelength(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelExcitationWavelength(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelExcitationWavelength(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelExcitationWavelength(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelFiller() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getChannelFilterSetRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelFilterSetRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelFilterSetRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelFilterSetRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelFluor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelFluor(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelFluor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelFluor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelGlobalMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves a specified channel's global maximum.

getChannelGlobalMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves a specified channel's global minimum.

getChannelID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelID(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelIlluminationType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelIlluminationType(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelIlluminationType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelIlluminationType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelKnownMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the specified channel's maximum based on the images that have been read.

getChannelKnownMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the specified channel's minimum based on the images that have been read.

getChannelLabel(int) - Method in class loci.formats.in.TextReader

Gets the label for the given channel.

getChannelLightSourceSettingsAttenuation(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelLightSourceSettingsAttenuation(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelLightSourceSettingsAttenuation(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelLightSourceSettingsAttenuation(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelLightSourceSettingsID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelLightSourceSettingsID(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelLightSourceSettingsID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelLightSourceSettingsID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelLightSourceSettingsWavelength(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelLightSourceSettingsWavelength(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelLightSourceSettingsWavelength(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelLightSourceSettingsWavelength(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getChannelName() - Method in class loci.formats.in.MetamorphHandler

getChannelName() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the channelName associated with this File.

getChannelName(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelName(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelName(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelName(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelName(int) - Method in class loci.tests.testng.Configuration

getChannelNames() - Method in class loci.formats.in.ND2Handler

getChannelNDFilter(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelNDFilter(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelNDFilter(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelNDFilter(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelPinholeSize(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelPinholeSize(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelPinholeSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelPinholeSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelPockelCellSetting(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelPockelCellSetting(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelPockelCellSetting(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelPockelCellSetting(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannels(int) - Method in class loci.formats.in.LegacyND2Reader

getChannelSamplesPerPixel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getChannelSamplesPerPixel(int, int) - Method in class loci.formats.meta.DummyMetadata

getChannelSamplesPerPixel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getChannelSamplesPerPixel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getChannelSeparator() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCharacterPos() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

getCharCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the character count or 0 if the SummaryInformation does not contain a char count.

getCharCount() - Method in class loci.poi.hssf.record.UnicodeString

get the number of characters in the string

getCharPart(String) - Method in class loci.poi.hssf.util.RangeAddress

getCharset() - Method in class loci.poi.hssf.record.FontRecord

get the character set

getCharSet() - Method in class loci.poi.hssf.usermodel.HSSFFont

get character-set to use.

getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Get the chart group index field for the SeriesChartGroupIndex record.

getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Get the chart group index field for the SeriesToChartGroup record.

getCharWidth(char) - Method in class loci.poi.hssf.usermodel.FontDetails

Retrieves the width of the specified character.

getCheckboxes(GenericDialog) - Static method in class loci.plugins.util.WindowTools

getChild() - Method in class loci.plugins.util.RecordedImageProcessor

getChild(int) - Method in class loci.poi.ddf.EscherRecord

Returns the indexed child record.

getChildById(short) - Method in class loci.poi.ddf.EscherContainerRecord

getChildIndex() - Method in class loci.poi.poifs.property.Property

Get the child property (its index in the Property Table)

getChildNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getChildPolicy(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getChildRecords() - Method in class loci.poi.ddf.EscherContainerRecord

getChildRecords() - Method in class loci.poi.ddf.EscherRecord

getChildRecords() - Method in class loci.poi.ddf.UnknownEscherRecord

getChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Returns a list of all shapes contained by the patriarch.

getChildren() - Method in interface loci.poi.hssf.usermodel.HSSFShapeContainer

getChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Return all children contained by this shape.

getChildren() - Method in class loci.poi.poifs.property.DirectoryProperty

Get an iterator over the children of this Parent; all elements are instances of Property.

getChildren() - Method in interface loci.poi.poifs.property.Parent

Get an iterator over the children of this Parent; all elements are instances of Property.

getChildrenByTagName(Element, String) - Static method in class ome.xml.model.AbstractOMEModelObject

Retrieves all the children of an element that have a given tag name.

getChoices(GenericDialog) - Static method in class loci.plugins.util.WindowTools

getClasses() - Method in class loci.formats.ClassList

Gets the list of classes as an array.

getClassID() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "class ID" field.

getClassID() - Method in class loci.poi.hpsf.SpecialPropertySet

getClip() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getClipboardFormat() - Method in class loci.poi.hpsf.Thumbnail

Returns an int representing the Clipboard Format

getClipboardFormatTag() - Method in class loci.poi.hpsf.Thumbnail

Returns an int representing the Clipboard Format Tag

getClipBounds() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClipBounds(Rectangle) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getClipRect() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClipRect() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getCO2Percent() - Method in class ome.xml.model.ImagingEnvironment

getCode() - Method in class loci.common.adapter.CodedEnumAdapter.LegacyWrapper

getCode() - Method in class loci.common.adapter.CodedEnumAdapter.ModernWrapper

getCode() - Method in interface loci.common.enumeration.CodedEnum

Retrieves the integer "code" for this enumeration.

getCode() - Method in enum loci.formats.codec.CompressionType

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.codec.JPEG2000BoxType

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.codec.JPEG2000SegmentMarker

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.tiff.IFDType

getCode() - Method in enum loci.formats.tiff.PhotoInterp

getCode() - Method in enum loci.formats.tiff.TiffCompression

getCode() - Method in interface ome.scifio.enumeration.CodedEnum

Retrieves the integer "code" for this enumeration.

getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Returns the specified coded code-block, for the specified component, in the current tile.

getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in interface jj2000.j2k.entropy.decoder.CodedCBlkDataSrcDec

Returns the specified coded code-block, for the specified component, in the current tile.

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlockSize() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets codeBlockSize.

getCodeBlockSize() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets codeBlockSize

getCodecName() - Method in enum loci.formats.tiff.TiffCompression

Retrieves the name of the TIFF compression codec.

getCodecOptions() - Method in class loci.formats.tiff.TiffParser

Retrieves the current set of codec options being used to decompress pixel data.

getCodepage() - Method in class loci.poi.hpsf.CustomProperties

Gets the codepage.

getCodepage() - Method in class loci.poi.hpsf.Section

Gets the section's codepage, if any.

getCodepage() - Method in class loci.poi.hssf.record.CodepageRecord

get the codepage for this workbook

getCodepage() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

get the codepage for the file

getCodeSegSymbol() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets codeSegSymbol

getCodestreamOffset() - Method in class loci.formats.in.JPEG2000MetadataParser

Retrieves the offset to the first contiguous codestream.

getCodestreamPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the pixel type as specified in the header.

getCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method creates and returns an array of positions to contiguous codestreams in the file

getCodestreamSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of channels the image has as specified in the header.

getCodestreamSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the width of the image as specified in the header.

getCodestreamSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the height of the image as specified in the header.

getCol() - Method in class loci.poi.hssf.util.CellReference

getCol1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column number for the top-left position.

getCol1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getCol2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column of the bottom right corner of this shape.

getCol2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getColapsed() - Method in class loci.poi.hssf.record.RowRecord

get whether or not to colapse this row

getColInfo(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getCollapsed() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get whether the cells are collapsed

getColLevelMax() - Method in class loci.poi.hssf.record.GutsRecord

get the maximum outline level for the col gutter.

getColor(short) - Method in class loci.poi.hssf.record.PaletteRecord

Returns the color value at a given index

getColor() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getColor() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the color for the font

getColor(short) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Retrieves the color at a given index

getColor() - Method in class ome.xml.model.Channel

getColor() - Method in class ome.xml.model.Well

getColor1() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColor2() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColor3() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColor4() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns the currently set TIFFColorConverter object, or null if none is set.

getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the current TIFFColorConverter object that will be used to perform color conversion when writing the image, or null if none is set.

getColorMode() - Method in class loci.plugins.in.ImporterOptions

getColorModeInfo() - Method in class loci.plugins.in.ImporterOptions

getColorModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the ColorModel of the image.

getColorModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getColorModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getColorModel() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

Returns the color model created from the palette box.

getColorModel() - Method in class loci.formats.FormatWriter

getColorModel() - Method in interface loci.formats.IFormatWriter

Gets the color model.

getColorModel() - Method in class loci.formats.ImageWriter

getColorModel() - Method in class loci.formats.WriterWrapper

getColorModel() - Method in class loci.plugins.util.RecordedImageProcessor

getColorModes() - Method in class loci.plugins.in.ImporterOptions

getColorPaletteIndex() - Method in class loci.poi.hssf.record.FontRecord

get the font's color palette index

getColourPaletteIndex() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the colour palette index field for the LineFormat record.

getColumn(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor

getColumn() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getColumn() - Method in class loci.poi.hssf.record.BlankRecord

get the column this cell defines within the row

getColumn() - Method in class loci.poi.hssf.record.BoolErrRecord

getColumn() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

get the column this cell defines within the row

getColumn() - Method in class loci.poi.hssf.record.formula.ExpPtg

getColumn() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getColumn() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getColumn() - Method in class loci.poi.hssf.record.FormulaRecord

getColumn() - Method in class loci.poi.hssf.record.LabelRecord

getColumn() - Method in class loci.poi.hssf.record.LabelSSTRecord

getColumn() - Method in class loci.poi.hssf.record.NoteRecord

Return the column that contains the comment

getColumn() - Method in class loci.poi.hssf.record.NumberRecord

getColumn() - Method in class loci.poi.hssf.record.RKRecord

getColumn() - Method in class loci.poi.hssf.usermodel.HSSFComment

Return the column of the cell that contains the comment

getColumn() - Method in class mdbtools.dbengine.sql.FQColumn

getColumn(int) - Method in class mdbtools.dbengine.sql.Select

getColumn() - Method in class ome.xml.model.Well

getColumNames(int) - Method in interface loci.formats.services.MetakitService

getColumNames(int) - Method in class loci.formats.services.MetakitServiceImpl

getColumnBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns all the column page breaks

getColumnBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Retrieves all the vertical page breaks

getColumnCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg

getColumnCount() - Method in class mdbtools.dbengine.sql.Select

getColumnCount() - Method in interface mdbtools.dbengine.Table

getColumnFrom() - Method in class loci.poi.hssf.util.Region

get the upper left hand corner column number

getColumnName(int) - Method in interface mdbtools.dbengine.Table

getColumnNames(String) - Method in interface loci.formats.services.MetakitService

getColumnNames(String) - Method in class loci.formats.services.MetakitServiceImpl

getColumnNames(int) - Method in class ome.metakit.MetakitReader

Retrieve the name of every column in the table with the given index.

getColumnNames(String) - Method in class ome.metakit.MetakitReader

Retrieve the name of every column in the named table.

getColumnNamingConvention() - Method in class ome.xml.model.Plate

getColumnRaw() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getColumnRaw() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getColumns() - Method in class ome.xml.model.Plate

getColumnTo() - Method in class loci.poi.hssf.util.Region

get the lower right hand corner column number

getColumnTypes(int) - Method in interface loci.formats.services.MetakitService

getColumnTypes(String) - Method in interface loci.formats.services.MetakitService

getColumnTypes(int) - Method in class loci.formats.services.MetakitServiceImpl

getColumnTypes(String) - Method in class loci.formats.services.MetakitServiceImpl

getColumnTypes(int) - Method in class ome.metakit.MetakitReader

Retrieve the type for every column in the table with the given index.

getColumnTypes(String) - Method in class ome.metakit.MetakitReader

Retrieve the type for every column in the named table.

getColumnWidth(short) - Method in class loci.poi.hssf.model.Sheet

get the width of a given column in units of 1/20th of a point width (twips?)

getColumnWidth() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the columns' width in 1/256 of a character width

getColumnWidth(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the width (in units of 1/256th of a character width )

getColWidth() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

get the default column width

getComment() - Method in class loci.formats.tiff.IFD

Convenience method for obtaining the ImageDescription from this IFD.

getComment() - Method in class loci.formats.tiff.TiffParser

Convenience method for obtaining a stream's first ImageDescription.

getCommentAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getCommentAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getCommentAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getCommentAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getCommentAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getCommentAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getCommentAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getCommentAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getCommentAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getCommentAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getCommentAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getCommentAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getCommentAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getCommentAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getCommentAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getCommentAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getCommentAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getCommentAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getCommentAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getCommentAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getCommentAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getCommentAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getCommentAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getCommentAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getCommentAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getCommentAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getCommentAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getCommentAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getCommentAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getCommentAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata

getCommentAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata

getCommentAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve

getCommentAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getComments() - Method in class loci.formats.in.JPEG2000MetadataParser

Retrieves the list of comments stored in the file.

getComments() - Method in class loci.poi.hpsf.SummaryInformation

Returns the comments (or null).

getCompany() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the company (or null).

getCompatibilityList() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the compatibilty list of this file type box.

getCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply forward component transformation associated with the current tile.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component, using the 'transfer type' specified in the block given as argument.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply inverse component transformation associated with the current tile.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns a block of image data containing the specifed rectangular area, in the specified component, as a copy (see below).

getCompDef(int) - Method in class jj2000.j2k.ModuleSpec

Gets default value of the specified component.

getCompHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the height in pixels of the specified component in the current tile.

getCompImgHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getCompImgHeight(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the height in pixels of the specified component in the overall image, for the given (component) resolution level.

getCompImgHeight(int) - Method in interface jj2000.j2k.image.ImgData

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the height in pixels of the specified component in the overall image, for the given resolution level.

getCompImgHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the height in pixels of the specified component in the overall image, for the given resolution level.

getCompImgWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

Width of the specified tile-component

getCompImgWidth(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the width in pixels of the specified component in the overall image, for the given (component) resolution level.

getCompImgWidth(int) - Method in interface jj2000.j2k.image.ImgData

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the width in pixels of the specified component in the overall image, for the given resolution level.

getCompImgWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the width in pixels of the specified component in the overall image, for the given resolution level.

getComplexData() - Method in class loci.poi.ddf.EscherComplexProperty

Get the complex data value.

getComponent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

getComponent(int) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

get the specified component

getComponentAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

getComponentTransformation() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets componentTransformation.

getComponentTransformation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets componentTransformation

getComponentType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

getComposite() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getComposite() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getCompressedSize() - Method in class loci.poi.ddf.EscherMetafileBlip

getCompressedSize() - Method in class loci.poi.ddf.EscherPictBlip

getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.BoundSheetRecord

get whether or not to interperate the Sheetname as compressed unicode (8/16 bit) (This is undocumented but can be found as Q187919 on the Microsoft(tm) Support site)

getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.NameRecord

gets the name compressed Unicode flag

getCompression() - Method in enum loci.formats.codec.CompressionType

Returns the compression.

getCompression(String) - Method in class loci.formats.FormatReader

Retrieves an Compression enumeration value for the given String.

getCompression() - Method in class loci.formats.FormatWriter

getCompression() - Method in interface loci.formats.IFormatWriter

Gets the current compression type.

getCompression() - Method in class loci.formats.ImageWriter

getCompression() - Method in class loci.formats.tiff.IFD

Retrieves the image's compression type (TIFF tag Compression) from this IFD.

getCompression() - Method in class loci.formats.WriterWrapper

getCompression() - Method in class ome.xml.model.BinData

getCompression() - Method in class ome.xml.model.External

getCompressionCodecOptions(IFD) - Method in enum loci.formats.tiff.TiffCompression

Creates a set of codec options for compression.

getCompressionCodecOptions(IFD, CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Creates a set of codec options for compression.

getCompressionFlag() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Is the contents of the blip compressed?

getCompressionTagValue() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieve the value to be assigned to the TIFF Compression tag in the TIFF image metadata.

getCompressionType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieve the name of the compression type supported by this compressor.

getCompressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the compression type.

getCompressionTypes() - Method in class loci.formats.FormatWriter

getCompressionTypes() - Method in interface loci.formats.IFormatWriter

Gets the available compression types.

getCompressionTypes() - Method in class loci.formats.ImageWriter

getCompressionTypes() - Method in class loci.formats.WriterWrapper

getCompSubsX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the component sub-sampling factor, with respect to the reference grid, along the horizontal direction for the specified component.

getCompSubsX(int) - Method in interface jj2000.j2k.image.ImgData

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the component sub-sampling factor, with respect to the reference grid, along the vertical direction for the specified component.

getCompSubsY(int) - Method in interface jj2000.j2k.image.ImgData

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompULX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal coordinate of the upper-left corner of the active tile, with respect to the canvas origin, in the component coordinates, for the specified component.

getCompULX(int) - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.Tiler

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the vertical coordinate of the upper-left corner of the active tile, with respect to the canvas origin, in the component coordinates, for the specified component.

getCompULY(int) - Method in interface jj2000.j2k.image.ImgData

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.Tiler

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width in pixels of the specified component in the current tile.

getConcatenateInfo() - Method in class loci.plugins.in.ImporterOptions

getConfig(String) - Method in class loci.formats.in.PrairieMetadata

Gets the value of the given configuration Key.

getConfig() - Method in class loci.formats.in.PrairieMetadata

Gets a read-only map of configuration key/value pairs.

getContent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box content in byte array.

getContents() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources

getContrastMethod(String) - Method in class loci.formats.FormatReader

Retrieves an ContrastMethod enumeration value for the given String.

getContrastMethod() - Method in class ome.xml.model.Channel

getCopies() - Method in class loci.poi.hssf.record.PrintSetupRecord

getCopies() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of copies.

getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.COD

getCopy(int) - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a copy of this object

getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getCopy() - Method in class jj2000.j2k.decoder.DecoderSpecs

Returns a copy of the current object.

getCopy() - Method in class jj2000.j2k.ModuleSpec

getCoreIndex() - Method in class loci.formats.FileStitcher

getCoreIndex() - Method in class loci.formats.FormatReader

getCoreIndex() - Method in interface loci.formats.IFormatReader

Return the index into CoreMetadata of the current resolution/series.

getCoreIndex() - Method in class loci.formats.ImageReader

getCoreIndex() - Method in class loci.formats.ReaderWrapper

getCoreMetadata() - Method in class loci.formats.DimensionSwapper

Deprecated.

getCoreMetadata() - Method in class loci.formats.FileStitcher

Deprecated.

getCoreMetadata() - Method in class loci.formats.FormatReader

Deprecated.

getCoreMetadata() - Method in interface loci.formats.IFormatReader

Deprecated.

Use #getCoreMetadataList instead.

getCoreMetadata() - Method in class loci.formats.ImageReader

Deprecated.

getCoreMetadata() - Method in class loci.formats.ReaderWrapper

Deprecated.

getCoreMetadataList() - Method in class loci.formats.DimensionSwapper

getCoreMetadataList() - Method in class loci.formats.FileStitcher

getCoreMetadataList() - Method in class loci.formats.FormatReader

getCoreMetadataList() - Method in interface loci.formats.IFormatReader

Obtains the core metadata values for the current file.

getCoreMetadataList() - Method in class loci.formats.ImageReader

getCoreMetadataList() - Method in class loci.formats.in.LeicaHandler

getCoreMetadataList() - Method in class loci.formats.in.ND2Handler

getCoreMetadataList() - Method in class loci.formats.ReaderWrapper

getCorrection(String) - Method in class loci.formats.FormatReader

Retrieves an Correction enumeration value for the given String.

getCorrection() - Method in class loci.formats.in.ND2Handler

getCorrection() - Method in class ome.xml.model.Objective

getCorrectionCollar() - Method in class ome.xml.model.ObjectiveSettings

getCount() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the number of data items present in the field.

getCount() - Method in class loci.formats.FilePattern

getCount() - Method in class loci.poi.hssf.record.FnGroupCountRecord

get the number of built-in functions

getCreateDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the creation time (or null).

getCreator() - Method in class ome.xml.model.OME

getCropInfo() - Method in class loci.plugins.in.ImporterOptions

getCropRegion(int) - Method in class loci.plugins.in.ImporterOptions

getCropRegion(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCrossingPoint() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the crossing point field for the AxisOptions record.

getCrossingPoint() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the crossing point field for the CategorySeriesAxis record.

getCStep(int) - Method in class loci.plugins.in.ImporterOptions

getCStep(int) - Method in class loci.plugins.in.ImportProcess

getCurrentColorModel() - Method in class loci.plugins.util.RecordedImageProcessor

getCurrentCountry() - Method in class loci.poi.hssf.record.CountryRecord

gets the current country

getCurrentFile() - Method in class loci.formats.FormatReader

getCurrentFile() - Method in interface loci.formats.IFormatReader

Returns the current file.

getCurrentFile() - Method in class loci.formats.ImageReader

getCurrentFile() - Method in class loci.formats.ReaderWrapper

getCurrentFile() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCurrentFile(String[]) - Method in class loci.plugins.macro.LociFunctions

getCurrentPos() - Method in class loci.formats.cache.Cache

Gets the current dimensional position.

getCustomColor(int, int) - Method in class loci.plugins.in.ImporterOptions

getCustomColorKey(int, int) - Method in class loci.plugins.in.ImporterOptions

getCustomMenuLength() - Method in class loci.poi.hssf.record.NameRecord

gets the custom menu length

getCustomMenuText() - Method in class loci.poi.hssf.record.NameRecord

get the custom menu text

getCustomPalette() - Method in class loci.poi.hssf.model.Workbook

Returns the custom palette in use for this workbook; if a custom palette record does not exist, then it is created.

getCustomPalette() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

getCustomProperties() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Gets the custom properties.

getCutIn(Integer) - Static method in class loci.formats.FormatTools

getCutIn() - Method in class ome.xml.model.TransmittanceRange

getCutInTolerance() - Method in class ome.xml.model.TransmittanceRange

getCutOut(Integer) - Static method in class loci.formats.FormatTools

getCutOut() - Method in class ome.xml.model.TransmittanceRange

getCutOutTolerance() - Method in class ome.xml.model.TransmittanceRange

getCycle() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the cycle associated with this Sequence.

getCycleCount() - Method in class loci.formats.in.PrairieMetadata

Gets the number of recorded cycles.

getCycleMax() - Method in class loci.formats.in.PrairieMetadata

Gets the maximum cycle value.

getCycleMin() - Method in class loci.formats.in.PrairieMetadata

Gets the minimum cycle value.

getData() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a reference to the data object associated with the field.

getData() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the entire image in a single Raster.

getData(Rectangle) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns an arbitrary rectangular region of the RenderedImage in a Raster.

getData() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Returns the UUID data of this box.

getData() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getData(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getData() - Method in class jj2000.j2k.image.DataBlk

Returns the array containing the data, or null if there is no data.

getData() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the array containing the data, or null if there is no data array.

getData() - Method in class jj2000.j2k.image.DataBlkInt

Returns the array containing the data, or null if there is no data array.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Returns the array containing the data, or null if there is no data.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the array containing the data, or null if there is no data array.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the array containing the data, or null if there is no data array.

getData() - Method in class loci.formats.gui.SignedByteBuffer

getData(int) - Method in class loci.formats.gui.SignedByteBuffer

getData() - Method in class loci.formats.gui.SignedShortBuffer

getData(int) - Method in class loci.formats.gui.SignedShortBuffer

getData() - Method in class loci.formats.gui.UnsignedIntBuffer

getData(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getData() - Method in class loci.poi.ddf.EscherBlipWMFRecord

The BLIP data

getData() - Method in class loci.poi.ddf.EscherTextboxRecord

Returns any extra data associated with this record.

getData() - Method in class loci.poi.ddf.UnknownEscherRecord

getData() - Method in class loci.poi.hssf.record.ContinueRecord

get the data for continuation

getData() - Method in class loci.poi.hssf.record.DrawingRecord

getData() - Method in class loci.poi.hssf.record.formula.AttrPtg

getData() - Method in class loci.poi.hssf.usermodel.HSSFPictureData

Gets the picture data.

getData() - Method in interface loci.poi.poifs.storage.ListManagedBlock

Get the data from the block

getData() - Method in class loci.poi.poifs.storage.RawDataBlock

Get the data from the block

getData() - Method in class loci.poi.poifs.storage.SmallDocumentBlock

Get the data from the block

getData() - Method in interface mdbtools.dbengine.Table

getDataElements(int, Object) - Method in class loci.formats.gui.Index16ColorModel

getDataElements(int, Object) - Method in class loci.formats.gui.SignedColorModel

getDataElements(int, Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getDataFloat() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the array containing the data, or null if there is no data array.

getDataFloat() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the array containing the data, or null if there is no data array.

getDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the index of the format

getDataFormatString(Workbook) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

Get the contents of the format string, by looking up the DataFormat against the supplied workbook

getDataInt() - Method in class jj2000.j2k.image.DataBlkInt

Returns the array containing the data, or null if there is no data array.

getDataInt() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the array containing the data, or null if there is no data array.

getDataLabelPlacement() - Method in class loci.poi.hssf.record.TextRecord

getDataset(int) - Method in class ome.xml.model.OME

getDatasetAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getDatasetAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getDatasetAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetCount() - Method in class loci.formats.meta.AggregateMetadata

getDatasetCount() - Method in class loci.formats.meta.DummyMetadata

getDatasetCount() - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetDescription(int) - Method in class loci.formats.meta.DummyMetadata

getDatasetDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetExperimenterGroupRef(int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetExperimenterGroupRef(int) - Method in class loci.formats.meta.DummyMetadata

getDatasetExperimenterGroupRef(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetExperimenterGroupRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetExperimenterRef(int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetExperimenterRef(int) - Method in class loci.formats.meta.DummyMetadata

getDatasetExperimenterRef(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetExperimenterRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetID(int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetID(int) - Method in class loci.formats.meta.DummyMetadata

getDatasetID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetImageRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetImageRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getDatasetImageRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetImageRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetImageRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetImageRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getDatasetImageRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetImageRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetName(int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetName(int) - Method in class loci.formats.meta.DummyMetadata

getDatasetName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getDatasetRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getDatasetRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDatasetRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDatasetStructureDescription() - Method in class loci.formats.FormatReader

getDatasetStructureDescription() - Method in interface loci.formats.IFormatReader

Returns a short description of the dataset structure.

getDatasetStructureDescription() - Method in class loci.formats.ImageReader

getDatasetStructureDescription() - Method in class loci.formats.ReaderWrapper

getDataType() - Method in class jj2000.j2k.image.DataBlk

Returns the data type of the DataBlk object, as defined in this class.

getDataType() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the identifier of this data type, TYPE_FLOAT, as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.image.DataBlkInt

Returns the identifier of this data type, TYPE_INT, as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_FLOAT for this class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_INT for this class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Returns the data type of the CBlkWTData object, as defined in the DataBlk class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the identifier of this data type, TYPE_FLOAT, as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the data type of this object, always DataBlk.TYPE_INT.

getDataType(int, int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Return the data type of this CBlkWTDataSrc for the given component in the current tile.

getDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Return the data type of this CBlkWTDataSrc.

getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_FLOAT for this class.

getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_INT for this class.

getDataType() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the type of data on which this filter works, as defined in the DataBlk interface.

getDataTypes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns a bit mask indicating the set of data types that may be used to store the data associated with the tag.

getDate() - Method in class loci.formats.in.MetamorphHandler

getDate() - Method in class loci.formats.in.ND2Handler

getDate() - Method in class loci.formats.in.PrairieMetadata

Gets the date of the acquisition.

getDate() - Method in class loci.tests.testng.Configuration

getDateCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a date.

getDatestamp() - Method in class loci.formats.in.SVSReader

getDbcellAt(int) - Method in class loci.poi.hssf.record.IndexRecord

getDebugInfo() - Method in class loci.poi.hssf.record.UnicodeString

return a character representation of the fields of this record

getDecoderSpecs() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the DecoderSpecs instance filled when reading the headers

getDecodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Gets decodingRate.

getDecomp(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the wavelet tree decomposition.

getDecomp(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the wavelet tree decomposition.

getDecompLevels(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the number of decomposition levels that are applied to obtain the LL band, in the specified tile-component.

getDecompLevels(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the number of decomposition levels that are applied to the LL band, in the specified tile-component.

getDecompositionLevel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets decompositionLevel

getDecompType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the decomposition type to be used in component 'n' and tile 't'.

getDecSpecType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the type of specification for the decomposition in the specified component and tile.

getDefault() - Method in class jj2000.j2k.ModuleSpec

Gets default value for this module.

getDefault() - Method in class loci.plugins.prefs.BooleanOption

Gets the default value of the option.

getDefault() - Method in class loci.plugins.prefs.DoubleOption

Gets the default value of the option.

getDefault() - Method in class loci.plugins.prefs.StringOption

Gets the default value of the option.

getDefaultColorModel() - Method in class loci.plugins.util.RecordedImageProcessor

getDefaultColumnWidth() - Method in class loci.poi.hssf.model.Sheet

get the default column width for the sheet (if the columns do not define their own width)

getDefaultColumnWidth() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default column width for the sheet (if the columns do not define their own width) in characters

getDefaultConfiguration() - Static method in class loci.formats.gui.AWTImageTools

Gets the default graphics configuration for the environment.

getDefaultCountry() - Method in class loci.poi.hssf.record.CountryRecord

gets the default country

getDefaultCustomColor(int) - Method in class loci.plugins.in.ImporterOptions

getDefaultHeader() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display a default header

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AddPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AreaPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ArrayPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AttrPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.BoolPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ErrPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ExpPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the default operands class value

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.IntPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the default operands class value

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MissingArgPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NamePtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NameXPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NumberPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.OperationPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.PercentPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ptg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.StringPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnknownPtg

getDefaultOptions() - Static method in class loci.formats.codec.CodecOptions

Return CodecOptions with reasonable default values.

getDefaultOptions() - Static method in class loci.formats.codec.JPEG2000CodecOptions

Return JPEG2000CodecOptions with reasonable default values.

getDefaultOptions(CodecOptions) - Static method in class loci.formats.codec.JPEG2000CodecOptions

Return JPEG2000CodecOptions using the given CodecOptions as the default.

getDefaultReaderClasses() - Static method in class loci.formats.ImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet

get the default row height for the sheet (if the rows do not define their own height)

getDefaultRowHeight() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default row height for the sheet (if the rows do not define their own height) in twips (1/20 of a point)

getDefaultRowHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default row height for the sheet (if the rows do not define their own height) in points.

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

getDefaultValue(String) - Method in class loci.plugins.prefs.OptionsList

Gets the default value of the string option with the given key.

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

getDefaultWriterClasses() - Static method in class loci.formats.ImageWriter

getDefinitionLength() - Method in class loci.poi.hssf.record.NameRecord

get the definition length

getDelMenuCount() - Method in class loci.poi.hssf.record.MMSRecord

get number of add del options (should be 0)

getDeltaT() - Method in class ome.xml.model.Plane

getDenominator() - Method in class loci.formats.tiff.TiffRational

Gets this number's denominator.

getDenominator() - Method in class loci.poi.hssf.record.SCLRecord

Get the denominator field for the SCL record.

getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.DequantizerParams

Returns the type of the dequantizer for which the parameters are.

getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

Returns the type of the dequantizer for which the parameters are.

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi

getDescription() - Method in class loci.formats.gui.ComboFileFilter

Returns the filter's description.

getDescription() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's description.

getDescription() - Method in class loci.formats.gui.FormatFileFilter

Gets the filter's description.

getDescription() - Method in class loci.formats.gui.NoExtensionFileFilter

Gets the filter's description.

getDescription() - Method in class loci.poi.ddf.EscherPropertyMetaData

getDescription() - Method in class ome.xml.model.Annotation

getDescription() - Method in class ome.xml.model.Dataset

getDescription() - Method in class ome.xml.model.Experiment

getDescription() - Method in class ome.xml.model.ExperimenterGroup

getDescription() - Method in class ome.xml.model.Image

getDescription() - Method in class ome.xml.model.MicrobeamManipulation

getDescription() - Method in class ome.xml.model.Plate

getDescription() - Method in class ome.xml.model.PlateAcquisition

getDescription() - Method in class ome.xml.model.Project

getDescription() - Method in class ome.xml.model.Reagent

getDescription() - Method in class ome.xml.model.ROI

getDescription() - Method in class ome.xml.model.Screen

getDescriptionText() - Method in class loci.poi.hssf.record.NameRecord

gets the description text

getDescriptionTextLength() - Method in class loci.poi.hssf.record.NameRecord

gets the description text length

getDeser() - Method in class loci.formats.Memoizer

Returns a configured Kryo instance.

getDestination(ImageReadParam, Iterator, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getDestinationRegion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getDestinationType(ImageReadParam, Iterator) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Gets the destination image type.

getDetector(int) - Method in class loci.tests.testng.Configuration

getDetector() - Method in class ome.xml.model.DetectorSettings

getDetector(int) - Method in class ome.xml.model.Instrument

getDetectorAmplificationGain(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorAmplificationGain(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorAmplificationGain(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorAmplificationGain(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorCount(int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorCount(int) - Method in class loci.formats.meta.DummyMetadata

getDetectorCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorGain(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorGain(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorGain(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorGain(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorID(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorModel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorModel(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorOffset(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorOffset(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorOffset(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorOffset(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorSettings() - Method in class ome.xml.model.Channel

getDetectorSettingsBinning(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorSettingsBinning(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorSettingsBinning(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsBinning(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorSettingsGain(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorSettingsGain(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorSettingsGain(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsGain(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorSettingsID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorSettingsID(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorSettingsID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorSettingsIntegration(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorSettingsIntegration(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorSettingsIntegration(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsIntegration(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorSettingsOffset(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorSettingsOffset(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorSettingsOffset(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsOffset(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorSettingsReadOutRate(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorSettingsReadOutRate(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorSettingsReadOutRate(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsReadOutRate(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorSettingsVoltage(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorSettingsVoltage(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorSettingsVoltage(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsVoltage(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorSettingsZoom(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorSettingsZoom(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorSettingsZoom(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsZoom(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorType(String) - Method in class loci.formats.FormatReader

Retrieves an DetectorType enumeration value for the given String.

getDetectorType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorType(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorVoltage(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorVoltage(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorVoltage(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorVoltage(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDetectorZoom(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDetectorZoom(int, int) - Method in class loci.formats.meta.DummyMetadata

getDetectorZoom(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDetectorZoom(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getDgg() - Method in class loci.poi.hssf.model.DrawingManager

getDgg() - Method in class loci.poi.hssf.model.DrawingManager2

getDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Not sure what this is for (maybe fill lines?) 1 = down, 2 = up, 3 = both, 0 for none..

getDialog() - Method in class loci.poi.hssf.record.WSBoolRecord

get whether sheet is a dialog sheet or not

getDialog() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether sheet is a dialog sheet or not

getDichroic(int) - Method in class ome.xml.model.Instrument

getDichroicCount(int) - Method in class loci.formats.meta.AggregateMetadata

getDichroicCount(int) - Method in class loci.formats.meta.DummyMetadata

getDichroicCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDichroicCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDichroicID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDichroicID(int, int) - Method in class loci.formats.meta.DummyMetadata

getDichroicID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDichroicID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDichroicLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDichroicLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getDichroicLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDichroicLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDichroicManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDichroicManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata

getDichroicManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDichroicManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDichroicModel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDichroicModel(int, int) - Method in class loci.formats.meta.DummyMetadata

getDichroicModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDichroicModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDichroicSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDichroicSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getDichroicSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDichroicSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDictionary() - Method in class loci.poi.hpsf.Section

Gets the section's dictionary.

getDigitPart(String) - Method in class loci.poi.hssf.util.RangeAddress

getDim() - Method in class loci.poi.hssf.util.AreaReference

return the dimensions of this area

getDimension(String) - Method in interface loci.formats.services.NetCDFService

Retrieves the length of a dimension.

getDimension(String) - Method in class loci.formats.services.NetCDFServiceImpl

getDimensionOrder() - Method in class loci.formats.ChannelMerger

getDimensionOrder() - Method in class loci.formats.ChannelSeparator

getDimensionOrder() - Method in class loci.formats.DimensionSwapper

getDimensionOrder() - Method in class loci.formats.FileStitcher

getDimensionOrder() - Method in class loci.formats.FormatReader

getDimensionOrder(String) - Method in class loci.formats.FormatReader

Retrieves an DimensionOrder enumeration value for the given String.

getDimensionOrder() - Method in interface loci.formats.IFormatReader

Gets a five-character string representing the dimension order in which planes will be returned.

getDimensionOrder() - Method in class loci.formats.ImageReader

getDimensionOrder() - Method in class loci.formats.ReaderWrapper

getDimensionOrder(String[]) - Method in class loci.plugins.macro.LociFunctions

getDimensionOrder() - Method in class loci.tests.testng.Configuration

getDimensionOrder() - Method in class ome.xml.model.Pixels

getDimensionSwapper() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getDimsLoc() - Method in class loci.poi.hssf.model.Sheet

get the location of the DimensionsRecord (which is the last record before the value section)

getDirectory() - Method in class loci.poi.hssf.usermodel.HSSFObjectData

Gets the object data.

getDisplayedTab() - Method in class loci.poi.hssf.record.WindowOneRecord

get the displayed tab number

getDisplayedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

sets the first tab that is displayed in the list of tabs in excel.

getDisplayFormulas() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display formulas

getDisplayGridlines() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display gridlines

getDisplayGuts() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the outline symbols are displaed

getDisplayGuts() - Method in class loci.poi.hssf.record.WSBoolRecord

get whether to display the guts or not

getDisplayGuts() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether to display the guts or not

getDisplayHorizontalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the horizontal scrollbar or not

getDisplayMode() - Method in class loci.poi.hssf.record.TextRecord

Get the display mode field for the Text record.

getDisplayRowColHeadings() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display row and column headings

getDisplayTabs() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the tabs or not

getDisplayVerticalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the vertical scrollbar or not

getDisplayZeros() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display zero values

getDocparts() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the doc parts (or null) when this method is implemented.

getDocument() - Method in class loci.formats.gui.XMLWindow

Gets the XML document currently being displayed within the window.

getDocument() - Method in class loci.poi.poifs.filesystem.DocumentNode

get the POIFSDocument

getDocument() - Method in class loci.poi.poifs.property.DocumentProperty

get the POIFSDocument

getDocumentBytes(String) - Method in interface loci.formats.services.POIService

Retrieve all of the raw bytes that correspond to the given file name.

getDocumentBytes(String, int) - Method in interface loci.formats.services.POIService

Retrieve at most 'length' bytes that correspond to the given file name.

getDocumentBytes(String) - Method in class loci.formats.services.POIServiceImpl

getDocumentBytes(String, int) - Method in class loci.formats.services.POIServiceImpl

getDocumentList() - Method in interface loci.formats.services.POIService

Retrieve a list of all files in the current POI file system.

getDocumentList() - Method in class loci.formats.services.POIServiceImpl

getDocumentStream(String) - Method in interface loci.formats.services.POIService

Retrieve a RandomAccessInputStream corresponding to the given file name.

getDocumentStream(String) - Method in class loci.formats.services.POIServiceImpl

getDocumentSummaryInformation() - Method in class loci.poi.POIDocument

Fetch the Document Summary Information of the document

getDocumentSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

Returns the Document Summary Information properties singleton.

getDomains() - Method in class loci.formats.FormatReader

getDomains() - Method in interface loci.formats.IFormatReader

Returns the list of domains represented by the current file.

getDomains() - Method in class loci.formats.ImageReader

getDomains() - Method in class loci.formats.in.CellomicsReader

getDomains() - Method in class loci.formats.in.ICSReader

getDomains() - Method in class loci.formats.in.MetamorphTiffReader

getDomains() - Method in class loci.formats.in.NiftiReader

getDomains() - Method in class loci.formats.in.OMETiffReader

getDomains() - Method in class loci.formats.in.OMEXMLReader

getDomains() - Method in class loci.formats.ReaderWrapper

getDouble(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a double value from a byte array, reads it in little endian format then converts the resulting revolting IEEE 754 (curse them) floating point number to a happy java double

getDouble(byte[]) - Static method in class loci.poi.util.LittleEndian

get a double value from the beginning of a byte array

getDoubleAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getDoubleAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getDoubleAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getDoubleAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDoubleAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDoubleAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getDoubleAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getDoubleAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getDoubleAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDoubleAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getDoubleAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getDoubleAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDoubleAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDoubleAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getDoubleAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getDoubleAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getDoubleAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDoubleAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getDoubleAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getDoubleAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDoubleAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDoubleAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getDoubleAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getDoubleAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDoubleAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDoubleAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getDoubleAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getDoubleAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDoubleAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDoubleAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata

getDoubleAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata

getDoubleAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve

getDoubleAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getDoubles(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubles(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubles(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDraft() - Method in class loci.poi.hssf.record.PrintSetupRecord

getDraft() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the draft mode.

getDrawAreaHeight() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getDrawAreaWidth() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getDrawingGroupId() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster

getDrawingGroupId() - Method in class loci.poi.ddf.EscherDgRecord

Gets the drawing group id for this record.

getDrawingManager() - Method in class loci.poi.hssf.model.Workbook

getDrawingsSaved() - Method in class loci.poi.ddf.EscherDggRecord

getDsf() - Method in class loci.poi.hssf.record.DSFRecord

get the DSF flag

getDT(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getDX(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getDx1() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Retrieves offset within the parent coordinate space for the top left point.

getDx1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset within the top-left cell.

getDx1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDx2() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Retrieves offset within the parent coordinate space for the bottom right point.

getDx2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset withing the cell for the bottom-right corner of this shape.

getDx2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDY(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getDy1() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Gets offset within the parent coordinate space for the top left point.

getDy1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset within the top-left corner of the current shape.

getDy1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDy2() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Gets the offset within the parent coordinate space for the bottom right point.

getDy2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset withing the cell for the bottom-right corner of this shape.

getDy2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDZ(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getEditTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the total time spent in editing the document (or 0).

getEffectiveSizeC() - Method in class loci.formats.FormatReader

getEffectiveSizeC() - Method in interface loci.formats.IFormatReader

Gets the effective size of the C dimension, guaranteeing that getEffectiveSizeC() * getSizeZ() * getSizeT() == getImageCount() regardless of the result of isRGB().

getEffectiveSizeC() - Method in class loci.formats.ImageReader

getEffectiveSizeC() - Method in class loci.formats.ReaderWrapper

getEffectiveSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions

getElem(int) - Method in class loci.formats.gui.SignedByteBuffer

getElem(int, int) - Method in class loci.formats.gui.SignedByteBuffer

getElem(int, int) - Method in class loci.formats.gui.SignedShortBuffer

getElem(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElem(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElemDouble(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElemDouble(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElement(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getElement(int) - Method in class loci.poi.ddf.EscherArrayProperty

getElementDescription(String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementMaxChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementMinChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElements() - Method in class loci.formats.FilePattern

getElements() - Method in class loci.formats.FilePatternBlock

getElementSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getElemFloat(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElemFloat(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

getEllipseFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseID(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseLocked(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseRadiusX(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseRadiusX(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseRadiusX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseRadiusX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseRadiusY(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseRadiusY(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseRadiusY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseRadiusY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseText(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseText(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseTheC(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseTheT(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseTransform(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseVisible(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseX(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseX(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEllipseY(int, int) - Method in class loci.formats.meta.AggregateMetadata

getEllipseY(int, int) - Method in class loci.formats.meta.DummyMetadata

getEllipseY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getEllipseY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getEmail() - Method in class ome.xml.model.Experimenter

getEmission() - Method in class loci.formats.in.SVSReader

getEmissionWavelength(Integer) - Static method in class loci.formats.FormatTools

getEmissionWavelength(int) - Method in class loci.tests.testng.Configuration

getEmissionWavelength() - Method in class ome.xml.model.Channel

getEmissionWavelengths() - Method in class loci.formats.in.ND2Handler

getEmpty() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Get the empty field for the SheetProperties record.

getEncoding() - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.

As of 3-Jan-06 POI now automatically handles Unicode without forcing the encoding.

getEncodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets encodingRate.

getEncodingRate() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets encodingRate

getEndRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the physical row number of the end row in a block

getEndTime() - Method in class ome.xml.model.PlateAcquisition

getEntity() - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.BinningEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler

getEntity() - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler

Retrieve the entity corresponding to this handler.

getEntity() - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MediumEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.PulseEnumHandler

getEntries() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

get an iterator of the Entry instances contained directly in this instance (in other words, children only; no grandchildren etc.)

getEntries() - Method in class loci.poi.poifs.filesystem.DirectoryNode

get an iterator of the Entry instances contained directly in this instance (in other words, children only; no grandchildren etc.)

getEntry(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

get a specified Entry by name

getEntry(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode

get a specified Entry by name

getEntryCount() - Method in class loci.common.ZipHandle

Returns the number of entries.

getEntryCount() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

find out how many Entry instances are contained directly within this DirectoryEntry

getEntryCount() - Method in class loci.poi.poifs.filesystem.DirectoryNode

find out how many Entry instances are contained directly within this DirectoryEntry

getEntryCount() - Method in class ome.scifio.io.ZipHandle

Returns the number of entries.

getEntryName() - Method in class loci.common.ZipHandle

Get the name of the backing Zip entry.

getEntryName() - Method in class ome.scifio.io.ZipHandle

Get the name of the backing Zip entry.

getEnumeratedColorSpace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the enumerated color space.

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.BinningEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler

getEnumeration(String) - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler

Attempt to find an enumeration from a list of enumeration values.

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MediumEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PulseEnumHandler

getEofLoc() - Method in class loci.poi.hssf.model.Sheet

getEPH() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets EPH.

getEPH() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets EPH

getEqualsToIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord

getEquation() - Method in class mdbtools.dbengine.sql.Join

getErrorCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as an error code.

getErrorCount() - Method in class loci.common.xml.ValidationErrorHandler

getErrorCount() - Method in class ome.scifio.xml.ValidationErrorHandler

getErrorMessage() - Method in class loci.formats.FilePattern

Gets the file pattern error message, if any.

getErrorValue() - Method in class loci.poi.hssf.record.BoolErrRecord

get the error value for the cell

getEscherProperties() - Method in class loci.poi.ddf.EscherOptRecord

The list of properties stored by this record.

getEscherProperty(int) - Method in class loci.poi.ddf.EscherOptRecord

The list of properties stored by this record.

getEscherRecord(int) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getEscherTextbox() - Method in class loci.poi.hssf.model.TextboxShape

getEvent() - Method in class loci.common.StatusEvent

getExcelDate(Date) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a Date, converts it into a double representing its internal Excel representation, which is the number of days since 1/1/1900.

getExcitation() - Method in class loci.formats.in.SVSReader

getExcitationWavelength(Integer) - Static method in class loci.formats.FormatTools

getExcitationWavelength(int) - Method in class loci.tests.testng.Configuration

getExcitationWavelength() - Method in class ome.xml.model.Channel

getExcitationWavelengths() - Method in class loci.formats.in.ND2Handler

getExFormatAt(int) - Method in class loci.poi.hssf.model.Workbook

gets the ExtendedFormatRecord at the given 0-based index

getExifIFDs() - Method in class loci.formats.tiff.TiffParser

Returns EXIF IFDs.

getExifTagName(int) - Static method in class loci.formats.in.BaseTiffReader

getExperiment() - Method in class ome.xml.model.MicrobeamManipulation

getExperiment(int) - Method in class ome.xml.model.OME

getExperimentCount() - Method in class loci.formats.meta.AggregateMetadata

getExperimentCount() - Method in class loci.formats.meta.DummyMetadata

getExperimentCount() - Method in interface loci.formats.meta.MetadataRetrieve

getExperimentCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimentDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimentDescription(int) - Method in class loci.formats.meta.DummyMetadata

getExperimentDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimentDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenter(int) - Method in class ome.xml.model.OME

getExperimenterAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterCount() - Method in class loci.formats.meta.AggregateMetadata

getExperimenterCount() - Method in class loci.formats.meta.DummyMetadata

getExperimenterCount() - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterEmail(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterEmail(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterEmail(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterEmail(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterFirstName(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterFirstName(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterFirstName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterFirstName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterGroup(int) - Method in class ome.xml.model.OME

getExperimenterGroupAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterGroupAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterGroupAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterGroupAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterGroupAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterGroupAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterGroupAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterGroupAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterGroupCount() - Method in class loci.formats.meta.AggregateMetadata

getExperimenterGroupCount() - Method in class loci.formats.meta.DummyMetadata

getExperimenterGroupCount() - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterGroupCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterGroupDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterGroupDescription(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterGroupDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterGroupDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterGroupExperimenterRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterGroupExperimenterRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterGroupExperimenterRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterGroupExperimenterRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterGroupExperimenterRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterGroupExperimenterRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterGroupExperimenterRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterGroupExperimenterRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterGroupID(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterGroupID(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterGroupID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterGroupID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterGroupLeader(int, int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterGroupLeader(int, int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterGroupLeader(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterGroupLeader(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterGroupName(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterGroupName(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterGroupName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterGroupName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterID(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterID(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterInstitution(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterInstitution(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterInstitution(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterInstitution(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterLastName(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterLastName(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterLastName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterLastName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterMiddleName(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterMiddleName(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterMiddleName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterMiddleName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimenterUserName(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimenterUserName(int) - Method in class loci.formats.meta.DummyMetadata

getExperimenterUserName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimenterUserName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimentExperimenterRef(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimentExperimenterRef(int) - Method in class loci.formats.meta.DummyMetadata

getExperimentExperimenterRef(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimentExperimenterRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimentID(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimentID(int) - Method in class loci.formats.meta.DummyMetadata

getExperimentID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimentID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExperimentType(String) - Method in class loci.formats.FormatReader

Retrieves an ExperimentType enumeration value for the given String.

getExperimentType(int) - Method in class loci.formats.meta.AggregateMetadata

getExperimentType(int) - Method in class loci.formats.meta.DummyMetadata

getExperimentType(int) - Method in interface loci.formats.meta.MetadataRetrieve

getExperimentType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getExposures() - Method in class loci.formats.in.MetamorphHandler

getExposureTime() - Method in class loci.formats.in.SVSReader

getExposureTime(int) - Method in class loci.tests.testng.Configuration

getExposureTime() - Method in class ome.xml.model.Plane

getExposureTimes() - Method in class loci.formats.in.ND2Handler

getExpressionLength() - Method in class loci.poi.hssf.record.FormulaRecord

get the length (in number of tokens) of the expression

getExpressionLength() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getExtendedRst() - Method in class loci.poi.hssf.record.UnicodeString

getExtension() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's first valid extension.

getExtensionFunctions() - Method in class loci.plugins.macro.MacroFunctions

getExtensions() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's valid extensions.

getExternal() - Method in class ome.xml.model.BinaryFile

getExternalDescription() - Method in class ome.xml.model.Well

getExternalIdentifier() - Method in class ome.xml.model.Plate

getExternalIdentifier() - Method in class ome.xml.model.Well

getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getExternSheetNumber() - Method in class loci.poi.hssf.record.NameRecord

gets the extern sheet number

getExternsheetPos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the externsheetPos.

getExtraLayers(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the number of extra layers to add after the optimization point 'n', but before optimization point 'n+1'.

getExtraLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box extra length.

getf(int) - Method in class loci.plugins.util.RecordedImageProcessor

getf(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

getFailureClass() - Method in exception loci.common.services.DependencyException

Returns the class that was used during a failed instantiation.

getFamily() - Method in class loci.poi.hssf.record.FontRecord

get the font family (TODO)

getFieldIndex() - Method in class loci.formats.in.ND2Handler

getFieldIndex() - Method in class ome.xml.model.Plate

getFieldName(Class<?>, int) - Static method in class loci.common.DebugTools

This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.

getFieldName(int) - Static method in class loci.formats.tiff.IFD

This method uses reflection to scan the values of this class's static fields, returning the first matching field's name.

getFieldName(Class<?>, int) - Static method in class ome.scifio.common.DebugTools

This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.

getFilamentID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilamentID(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilamentID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilamentID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilamentLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilamentLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilamentLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilamentLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilamentManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilamentManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilamentManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilamentManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilamentModel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilamentModel(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilamentModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilamentModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilamentPower(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilamentPower(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilamentPower(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilamentPower(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilamentSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilamentSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilamentSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilamentSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilamentType(String) - Method in class loci.formats.FormatReader

Retrieves an FilamentType enumeration value for the given String.

getFilamentType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilamentType(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilamentType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilamentType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFile(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the File with the given channel.

getFile(int, int, int) - Method in class loci.formats.in.PrairieMetadata

Gets the Frame at the given (cycle, index, channel).

getFile(int, int) - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the Frame at the given (cycle, index, channel).

getFile() - Method in interface loci.formats.services.NetCDFService

Retrieves the current initialized file path.

getFile() - Method in class loci.formats.services.NetCDFServiceImpl

getFile() - Method in class loci.tests.testng.Configuration

getFileAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getFileAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getFileAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getFileAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getFileAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFileAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFileAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getFileAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFileAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFileAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getFileAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getFileAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getFileAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFileAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getFileAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getFileAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getFileAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFileAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getFileAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getFileAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getFileAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFileAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getFileAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getFileAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getFileAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFileAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getFileAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getFileAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getFileAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFileChannel() - Method in class loci.common.NIOFileHandle

Gets the FileChannel from this FileHandle.

getFileChannel() - Method in class ome.scifio.io.NIOFileHandle

Gets the FileChannel from this FileHandle.

getFileIdClusters() - Method in class loci.poi.ddf.EscherDggRecord

getFileInfo(int) - Method in class loci.formats.ome.OmeisImporter

Deprecated.

Gets information about the file corresponding to the given file ID.

getFilename(int, int, IFormatReader, String) - Static method in class loci.formats.FormatTools

getFilename() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the filename associated with this File.

getFileName() - Method in class ome.xml.model.BinaryFile

getFileName() - Method in class ome.xml.model.UUID

getFilenames(String, IFormatReader) - Static method in class loci.formats.FormatTools

getFilePattern() - Method in class loci.formats.AxisGuesser

Gets the file pattern.

getFilePattern() - Method in class loci.formats.FileStitcher

Gets the file pattern object used to build the list of files.

getFilePointer() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper

getFilePointer() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper

getFilePointer() - Method in class loci.common.ByteArrayHandle

getFilePointer() - Method in class loci.common.FileHandle

getFilePointer() - Method in interface loci.common.IRandomAccess

Returns the current offset in this stream.

getFilePointer() - Method in class loci.common.NIOFileHandle

getFilePointer() - Method in class loci.common.NIOInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class loci.common.RandomAccessInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class loci.common.RandomAccessOutputStream

Returns the current offset within the stream.

getFilePointer() - Method in class loci.common.StreamHandle

getFilePointer() - Method in class ome.scifio.io.ByteArrayHandle

getFilePointer() - Method in class ome.scifio.io.FileHandle

getFilePointer() - Method in interface ome.scifio.io.IRandomAccess

Returns the current offset in this stream.

getFilePointer() - Method in class ome.scifio.io.NIOFileHandle

getFilePointer() - Method in class ome.scifio.io.NIOInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class ome.scifio.io.RandomAccessInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class ome.scifio.io.RandomAccessOutputStream

Returns the current offset within the stream.

getFilePointer() - Method in class ome.scifio.io.StreamHandle

getFiles() - Method in class loci.formats.FilePattern

Gets a listing of all files matching the given file pattern.

getFiles(String, List, ConfigurationTree, String) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFiles(String, List, ConfigurationTree, String, String[]) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFiles(String, List, ConfigurationTree, String, String[], String) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFileSharing() - Method in class loci.poi.hssf.model.Workbook

getFileSize(String) - Method in interface loci.formats.services.POIService

Retrieve the total number of bytes in the given file.

getFileSize(String) - Method in class loci.formats.services.POIServiceImpl

getFileStitcher() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getFileTimestamp() - Static method in class loci.common.DateTools

Returns a timestamp for the current timezone in a format suitable for a filename in a locale-independent format ("YYYY-MM-DD_HH-MM-SS")

getFileTimestamp() - Static method in class ome.scifio.common.DateTools

Returns a timestamp for the current timezone in a format suitable for a filename in a locale-independent format ("YYYY-MM-DD_HH-MM-SS")

getFillBackground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the background palette color index

getFillBackgroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the background fill color

getFillByte() - Static method in class loci.poi.poifs.storage.DocumentBlock

getFillColor() - Method in class loci.poi.hssf.usermodel.HSSFShape

The color used to fill this shape.

getFillColor() - Method in class ome.xml.model.Shape

getFillForeground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the foreground palette color index

getFillForegroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the foreground fill color

getFillPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the fill palette options bitmask (see indivdual bit getters that reference this method)

getFillPattern() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the fill pattern (??) - set to 1 to fill with foreground color

getFillRule(String) - Method in class loci.formats.FormatReader

Retrieves an FillRule enumeration value for the given String.

getFillRule() - Method in class ome.xml.model.Shape

getFilter() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets filters.

getFilter() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Filter should always be 0

getFilter(int) - Method in class ome.xml.model.Instrument

getFilterCount(int) - Method in class loci.formats.meta.AggregateMetadata

getFilterCount(int) - Method in class loci.formats.meta.DummyMetadata

getFilterCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterFilterWheel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterFilterWheel(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterFilterWheel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterFilterWheel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterID(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterModel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterModel(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets filters

getFilters() - Method in class loci.formats.gui.ComboFileFilter

Gets the list of file filters forming this filter combination.

getFilterSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSet(int) - Method in class ome.xml.model.Instrument

getFilterSetCount(int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetCount(int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetDichroicRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetDichroicRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetDichroicRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetDichroicRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetEmissionFilterRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetEmissionFilterRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetEmissionFilterRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetEmissionFilterRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetEmissionFilterRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetEmissionFilterRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetEmissionFilterRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetEmissionFilterRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetExcitationFilterRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetExcitationFilterRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetExcitationFilterRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetExcitationFilterRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetExcitationFilterRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetExcitationFilterRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetExcitationFilterRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetExcitationFilterRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetID(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetModel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetModel(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterSetSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterSetSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterSetSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterSetSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the type of filter used according to the FilterTypes interface.

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the type of filter used according to the FilterTypes interface(W9x7).

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the type of filter used according to the FilterTypes interface (W5x3).

getFilterType(String) - Method in class loci.formats.FormatReader

Retrieves an FilterType enumeration value for the given String.

getFilterType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getFilterType(int, int) - Method in class loci.formats.meta.DummyMetadata

getFilterType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getFilterType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getFilterWheel() - Method in class ome.xml.model.Filter

getFinalCRC() - Method in class loci.common.CRC

getFinalCRC() - Method in class ome.scifio.common.CRC

getFirst() - Method in class loci.formats.FilePattern

getFirst() - Method in class loci.formats.FilePatternBlock

getFirstC() - Method in class ome.xml.model.TiffData

getFirstCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getFirstCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the number of the first cell contained in this row.

getFirstChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getFirstCodeStreamLength() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method returns the length of the first contiguous codestreams in the file

getFirstCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method returns the position of the first contiguous codestreams in the file

getFirstCol() - Method in class loci.poi.hssf.record.DimensionsRecord

get the first column number for the sheet

getFirstCol() - Method in class loci.poi.hssf.record.RowRecord

get the logical col number for the first cell this row (0 based index)

getFirstColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the first column this record defines formatting info for

getFirstColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getFirstColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg

getFirstColumn() - Method in class loci.poi.hssf.record.MulBlankRecord

starting column (first cell this holds in the row)

getFirstColumn() - Method in class loci.poi.hssf.record.MulRKRecord

starting column (first cell this holds in the row)

getFirstColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getFirstColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg

getFirstFile() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the first File of the Sequence.

getFirstFrame() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the first Frame of the Sequence.

getFirstIFD() - Method in class loci.formats.tiff.TiffParser

Gets the first IFD within the TIFF file, or null if the input source is not a valid TIFF file.

getFirstIFDEntry(int) - Method in class loci.formats.tiff.TiffParser

Retrieve a given entry from the first IFD in the stream.

getFirstName() - Method in class ome.xml.model.Experimenter

getFirstOffset() - Method in class loci.formats.tiff.TiffParser

Gets offset to the first IFD, or -1 if stream is not TIFF.

getFirstRow() - Method in class loci.poi.hssf.record.DimensionsRecord

get the first row number for the sheet

getFirstRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getFirstRow() - Method in class loci.poi.hssf.record.formula.AreaPtg

getFirstRow() - Method in class loci.poi.hssf.record.IndexRecord

getFirstRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getFirstRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getFirstRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getFirstRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the first row on the sheet

getFirstSection() - Method in class loci.poi.hpsf.PropertySet

Gets the PropertySet's first section.

getFirstSection() - Method in class loci.poi.hpsf.SpecialPropertySet

getFirstSequence() - Method in class loci.formats.in.PrairieMetadata

Gets the first Sequence.

getFirstT() - Method in class ome.xml.model.TiffData

getFirstTimeInfo() - Method in class loci.plugins.in.ImporterOptions

getFirstZ() - Method in class ome.xml.model.TiffData

getFitHeight() - Method in class loci.poi.hssf.record.PrintSetupRecord

getFitHeight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of pages high to fit the sheet in.

getFitToPage() - Method in class loci.poi.hssf.record.WSBoolRecord

fit to page option is on

getFitToPage() - Method in class loci.poi.hssf.usermodel.HSSFSheet

fit to page option is on

getFitWidth() - Method in class loci.poi.hssf.record.PrintSetupRecord

getFitWidth() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of pages wide to fit sheet in.

getFixedPoint(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the position of the fixed point in the specified component (i.e.

getFixedPoint(int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns the position of the fixed point in the specified component (i.e.

getFixedPoint(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.Tiler

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the position of the fixed point in the output data for the specified component.

getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the position of the fixed point in the specified component.

getFlag() - Method in class loci.poi.ddf.EscherClientAnchorRecord

0 = Move and size with Cells, 2 = Move but don't size with cells, 3 = Don't move or size with cells.

getFlag() - Method in class loci.poi.hssf.record.SupBookRecord

getFlag() - Method in class loci.poi.hssf.record.UseSelFSRecord

returns whether we use natural language formulas or not

getFlags() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the Flags data element.

getFlags() - Method in class loci.poi.ddf.EscherSpRecord

The flags that apply to this shape.

getFlags() - Method in class loci.poi.hssf.record.NoteRecord

Options flags.

getFlags() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Get the flags field for the SheetProperties record.

getFlexFiles() - Method in class loci.formats.in.FlexReader.MeaHandler

getFloatArray() - Method in class loci.plugins.util.RecordedImageProcessor

getFloats(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloats(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloats(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFluor() - Method in class ome.xml.model.Channel

getFlushedPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getFnGroup() - Method in class loci.poi.hssf.record.NameRecord

getFont() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getFontAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the font at the given index number

getFontAtIndex(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Returns the font in use at a particular index.

getFontFamily(String) - Method in class loci.formats.FormatReader

Retrieves an FontFamily enumeration value for the given String.

getFontFamily() - Method in class ome.xml.model.Shape

getFontHeight() - Method in class loci.poi.hssf.record.FontRecord

gets the height of the font in 1/20th point units

getFontHeight() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the font height in unit's of 1/20th of a point.

getFontHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the font height

getFontIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the index to the FONT record (which font to use 0 based)

getFontIndex() - Method in class loci.poi.hssf.record.FontIndexRecord

Get the font index field for the FontIndex record.

getFontIndex() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

getFontIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

getFontMetrics() - Method in class loci.plugins.util.RecordedImageProcessor

getFontMetrics() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics

getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getFontName() - Method in class loci.poi.hssf.record.FontRecord

get the name of the font

getFontName() - Method in class loci.poi.hssf.usermodel.FontDetails

getFontName() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the name for the font (i.e.

getFontNameLength() - Method in class loci.poi.hssf.record.FontRecord

get the length of the fontname string

getFontOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Gets the font used in a particular formatting run.

getFontpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getFontRecordAt(int) - Method in class loci.poi.hssf.model.Workbook

gets the font record at the given index in the font table.

getFontRenderContext() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFontRenderContext() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getFontSize(Integer) - Static method in class loci.formats.FormatTools

getFontSize() - Method in class ome.xml.model.Shape

getFontStyle(String) - Method in class loci.formats.FormatReader

Retrieves an FontStyle enumeration value for the given String.

getFontStyle() - Method in class ome.xml.model.Shape

getFooter(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable

getFooter() - Method in class loci.poi.hssf.model.Sheet

Returns the FooterRecord.

getFooter() - Method in class loci.poi.hssf.record.FooterRecord

get the footer string

getFooter() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the user model for the document footer.

getFooterLength() - Method in class loci.poi.hssf.record.FooterRecord

get the length of the footer string

getFooterMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord

getFooterMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the footer margin.

getForceThumbnailsInfo() - Method in class loci.plugins.in.ImporterOptions

getForecolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the forecolor index field for the AreaFormat record.

getForegroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the foreground color field for the AreaFormat record.

getFormat() - Method in class loci.formats.FormatHandler

getFormat() - Method in interface loci.formats.IFormatHandler

Gets the name of this file format.

getFormat(String) - Method in class loci.formats.ImageReader

Gets a string describing the file format for the given file.

getFormat() - Method in class loci.formats.ImageReader

getFormat(String) - Method in class loci.formats.ImageWriter

Gets a string describing the file format for the given file.

getFormat() - Method in class loci.formats.ImageWriter

getFormat() - Method in class loci.formats.ReaderWrapper

getFormat() - Method in class loci.formats.WriterWrapper

getFormat(String, String[]) - Method in class loci.plugins.macro.LociFunctions

getFormat() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "format" field.

getFormat() - Method in class loci.poi.hpsf.SpecialPropertySet

getFormat(String, boolean) - Method in class loci.poi.hssf.model.Workbook

Returns a format index that matches the passed in format.

getFormat() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the format field for the LineFormat record.

getFormat(String) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format index that matches the given format string.

getFormat(short) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format string that matches the given format index

getFormatFlags() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the format flags field for the AreaFormat record.

getFormatFlags() - Method in class loci.poi.hssf.record.AreaRecord

Get the format flags field for the Area record.

getFormatFlags() - Method in class loci.poi.hssf.record.BarRecord

Get the format flags field for the Bar record.

getFormatFlags() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the format flags field for the DataFormat record.

getFormatFlags() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Get the format flags field for the SeriesLabels record.

getFormatID() - Method in class loci.poi.hpsf.Section

Returns the format ID.

getFormatIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the index to the Format record (which FORMAT to use 0-based)

getFormatIndex() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Get the format index field for the NumberFormatIndex record.

getFormatLine(PrintFormatTable.PrintStyles, String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getFormatName() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getFormatRun(int) - Method in class loci.poi.hssf.record.UnicodeString

getFormatRunCount() - Method in class loci.poi.hssf.record.UnicodeString

getFormats() - Method in class loci.poi.hssf.model.Workbook

Returns the list of FormatRecords in the workbook.

getFormatString() - Method in class loci.poi.hssf.record.FormatRecord

get the format string

getFormatted() - Method in class loci.poi.hssf.record.RowRecord

get whether the row has been formatted (even if its got all blank cells)

getFormattingRunLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the formatting run length field for the TextObjectBase record.

getFormulaOfLink() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the formula of link field for the LinkedData record.

getFormulaRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getFormulaTokens() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

getFrame(int, int) - Method in class loci.formats.in.PrairieMetadata

Gets the Frame at the given (cycle and index).

getFrame(int) - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the Frame with the given index.

getFramesPerSecond() - Method in class loci.formats.FormatWriter

getFramesPerSecond() - Method in interface loci.formats.IFormatWriter

Gets the frames per second to use when writing.

getFramesPerSecond() - Method in class loci.formats.ImageWriter

getFramesPerSecond() - Method in class loci.formats.WriterWrapper

getFreezePanes() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should freeze panes

getFreezePanesNoSplit() - Method in class loci.poi.hssf.record.WindowTwoRecord

freeze unsplit panes or not

getFrequencyMultiplication() - Method in class ome.xml.model.Laser

getFromCell() - Method in class loci.poi.hssf.util.RangeAddress

getFromCompressedUnicode(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Read 8 bit data (in ISO-8859-1 codepage) into a (unicode) Java String and return.

getFromUnicodeBE(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in big endian format (most important byte first), return a Java String representation of it.

getFromUnicodeBE(byte[]) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in big endian format (most important byte first), return a Java String representation of it.

getFromUnicodeLE(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in Little Endian format (most important byte last), return a Java String representation of it.

getFromUnicodeLE(byte[]) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in little endian format (most important byte last), return a Java String representation of it.

getFullPrecision() - Method in class loci.poi.hssf.record.PrecisionRecord

get whether to use full precision or just skew all you figures all to hell.

getFunction() - Method in class mdbtools.dbengine.sql.FunctionDef

getFunctionIndex() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getGain() - Method in class loci.formats.in.MetamorphHandler

getGain(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the cth gain for this Frame.

getGain() - Method in class ome.xml.model.Detector

getGain() - Method in class ome.xml.model.DetectorSettings

getGains() - Method in class loci.formats.in.ND2Handler

getGlobalCRC() - Method in class loci.common.CRC

getGlobalCRC() - Method in class ome.scifio.common.CRC

getGlobalMeta(String) - Method in class loci.formats.FormatReader

Gets a value from the global metadata table.

getGlobalMetadata() - Method in class loci.formats.FormatReader

getGlobalMetadata() - Method in interface loci.formats.IFormatReader

Obtains the hashtable containing the metadata field/value pairs from the current file.

getGlobalMetadata() - Method in class loci.formats.ImageReader

getGlobalMetadata() - Method in class loci.formats.in.LeicaHandler

getGlobalMetadata() - Method in class loci.formats.ReaderWrapper

getGreen(int) - Method in class loci.formats.gui.Index16ColorModel

getGreen(int) - Method in class loci.formats.gui.SignedColorModel

getGreen(Object) - Method in class loci.formats.gui.SignedColorModel

getGreen(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getGreen(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getGreen() - Method in class loci.poi.ddf.EscherRGBProperty

getGreen() - Method in class ome.xml.model.primitives.Color

Returns the green component of this color.

getGreens() - Method in class loci.formats.gui.Index16ColorModel

Return the array of green color components.

getGridset() - Method in class loci.poi.hssf.record.GridsetRecord

get whether the gridlines are shown during printing.

getGridsetRecord() - Method in class loci.poi.hssf.model.Sheet

Gets the gridset record for this sheet.

getGroupBy(int) - Method in class mdbtools.dbengine.sql.Select

getGroupByCount() - Method in class mdbtools.dbengine.sql.Select

getGroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions

getGuardBits() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets guardBits

getHandle(String) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from the given file.

getHandle(String, boolean) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHandle(String, boolean, boolean) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHandle(String) - Static method in class ome.scifio.io.Location

Gets an IRandomAccess object that can read from the given file.

getHandle(String, boolean) - Static method in class ome.scifio.io.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHandle(String, boolean, boolean) - Static method in class ome.scifio.io.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHashSHA1() - Method in class ome.xml.model.Plane

getHCenter() - Method in class loci.poi.hssf.record.HCenterRecord

get whether or not to horizonatally center this sheet.

getHeader() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getHeader(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable

getHeader() - Method in class loci.poi.hssf.model.Sheet

Returns the HeaderRecord.

getHeader() - Method in class loci.poi.hssf.record.HeaderRecord

get the header string

getHeader() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the user model for the document header.

getHeaderColor() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the palette index for the header color

getHeaderLength() - Method in class loci.poi.hssf.record.HeaderRecord

get the length of the header string

getHeaderMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord

getHeaderMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the header margin.

getHeaderPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the pixel type as specified in the header.

getHeaders() - Method in class ome.scifio.common.IniList

Gets the table names (headers) in the list.

getHeaderSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of channels the image has as specified in the header.

getHeaderSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the width of the image as specified in the header.

getHeaderSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the height of the image as specified in the header.

getHeadingPair() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the heading pair (or null) when this method is implemented.

getHeight() - Method in class com.luratech.lwf.lwfDecoder

getHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the height of the image.

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the height of the image.

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getHeight() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the number of leafs along the vertical direction.

getHeight() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Returns the number of leafs along the vertical direction.

getHeight() - Method in class loci.formats.codec.JPEGTileDecoder

getHeight(int) - Method in class loci.formats.in.LegacyND2Reader

getHeight() - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.getHeight()

getHeight() - Method in class loci.formats.services.LuraWaveServiceImpl

getHeight(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack

getHeight() - Method in class loci.plugins.util.BFVirtualStack

getHeight() - Method in class loci.plugins.util.RecordedImageProcessor

getHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the height of the metafile in EMU's (English Metric Units).

getHeight() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the height field for the AxisParent record.

getHeight() - Method in class loci.poi.hssf.record.ChartFormatRecord

getHeight() - Method in class loci.poi.hssf.record.ChartRecord

Get the height field for the Chart record.

getHeight() - Method in class loci.poi.hssf.record.RowRecord

get the height of the row

getHeight() - Method in class loci.poi.hssf.record.TextRecord

Get the height field for the Text record.

getHeight() - Method in class loci.poi.hssf.record.WindowOneRecord

get the height of the window

getHeight() - Method in class loci.poi.hssf.usermodel.FontDetails

getHeight() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the row's height or ff (-1) for undefined/default-height in twips (1/20th of a point)

getHeight() - Method in class loci.poi.hssf.util.RangeAddress

getHeight() - Method in class ome.xml.model.Mask

getHeight() - Method in class ome.xml.model.Rectangle

getHeightBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the height basis field for the FontBasis record.

getHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the row's height or ff (-1) for undefined/default-height in points (20*getHeight())

getHelpTopicLength() - Method in class loci.poi.hssf.record.NameRecord

gets the help topic length

getHelpTopicText() - Method in class loci.poi.hssf.record.NameRecord

get the help topic text

getHexString(byte[]) - Static method in class loci.common.DataTools

Deprecated.

Use DataTools.bytesToHex(byte[]) instead.

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AQUA

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLACK

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BROWN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORAL

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

getHexString() - Method in class loci.poi.hssf.util.HSSFColor

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GOLD

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIME

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.MAROON

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PINK

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PLUM

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.RED

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROSE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TAN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TEAL

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.WHITE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW

getHexString(byte[]) - Static method in class ome.scifio.common.DataTools

Deprecated.

Use DataTools.bytesToHex(byte[]) instead.

getHFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the horizontal analysis filters to be used in component 'n' and tile 't'.

getHFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the horizontal analysis filters to be used in component 'n' and tile 't'.

getHH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the HH child subband of this subband.

getHH() - Method in class jj2000.j2k.wavelet.Subband

Returns the HH child subband of this subband.

getHH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the HH child subband of this subband.

getHidden() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get whether or not these cells are hidden

getHidden() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether the window is hidden or not

getHidden() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the cell's using this style are to be hidden

getHiddenCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the hidden count or 0 if the DocumentSummaryInformation does not contain a hidden count.

getHideObj() - Method in class loci.poi.hssf.record.HideObjRecord

get hide object options

getHistogram() - Method in class loci.plugins.util.RecordedImageProcessor

getHistogramMax() - Method in class loci.plugins.util.RecordedImageProcessor

getHistogramMin() - Method in class loci.plugins.util.RecordedImageProcessor

getHistogramSize() - Method in class loci.plugins.util.RecordedImageProcessor

getHistoryBitMask() - Method in class loci.poi.hssf.record.BOFRecord

get the history bit mask (not very useful)

getHL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the HL (horizontal high-pass) child subband of this subband.

getHL() - Method in class jj2000.j2k.wavelet.Subband

Returns the HL (horizontal high-pass) child subband of this subband.

getHL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the HL (horizontal high-pass) child subband of this subband.

getHorAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the horizontal analysis wavelet filters used in each level, for the specified tile-component.

getHorAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the horizontal analysis wavelet filters used in each level, for the specified component and tile.

getHorizontalAlignment() - Method in class loci.poi.hssf.record.TextRecord

Get the horizontal alignment field for the Text record.

getHorizontalHold() - Method in class loci.poi.hssf.record.WindowOneRecord

get the horizontal position of the window (in 1/20ths of a point)

getHorizontallyCenter() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determine whether printed output for this sheet will be horizontally centered.

getHorizontalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Return the horizontal resolution.

getHorizontalScale() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Get the horizontalScale field for the PlotGrowth record.

getHorizontalSplitPosition() - Method in class loci.poi.hssf.util.PaneInformation

Returns the horizontal position of the split.

getHorizontalSplitTopRow() - Method in class loci.poi.hssf.util.PaneInformation

For a horizontal split returns the top row in the BOTTOM pane.

getHorizontalTextAlignment() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getHorWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

This function returns the horizontal wavelet filter relevant to this subband

getHorWFilter() - Method in class jj2000.j2k.wavelet.Subband

This function returns the horizontal wavelet filter relevant to this subband

getHorWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

This function returns the horizontal wavelet filter relevant to this subband

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.

getHPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the equivalent high-pass synthesis waveform of a cascade of filters, given the syhthesis waveform of the previous stage.

gethref() - Method in class ome.xml.model.External

getHResolution() - Method in class loci.poi.hssf.record.PrintSetupRecord

getHResolution() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the horizontal resolution.

getHtmlFooter() - Static method in class loci.formats.tools.PrintFormatTable

getHtmlFormatLine(String, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getHtmlHeader() - Static method in class loci.formats.tools.PrintFormatTable

getHumidity() - Method in class ome.xml.model.ImagingEnvironment

getICCProfile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the ICC color profile in this color specification box.

getIconic() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether the window has been iconized or not

getId() - Method in class loci.plugins.in.ImporterOptions

getId() - Method in class loci.poi.ddf.EscherProperty

getID() - Method in class loci.poi.hpsf.Property

Returns the property's ID.

getId() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the id field for the SeriesText record.

getID() - Method in class loci.tests.testng.FormatReaderTest

getID() - Method in class ome.xml.model.Annotation

getID() - Method in class ome.xml.model.AnnotationRef

getID() - Method in class ome.xml.model.Channel

getID() - Method in class ome.xml.model.ChannelRef

getID() - Method in class ome.xml.model.Dataset

getID() - Method in class ome.xml.model.DatasetRef

getID() - Method in class ome.xml.model.Detector

getID() - Method in class ome.xml.model.DetectorSettings

getID() - Method in class ome.xml.model.Dichroic

getID() - Method in class ome.xml.model.DichroicRef

getID() - Method in class ome.xml.model.Experiment

getID() - Method in class ome.xml.model.Experimenter

getID() - Method in class ome.xml.model.ExperimenterGroup

getID() - Method in class ome.xml.model.ExperimenterGroupRef

getID() - Method in class ome.xml.model.ExperimenterRef

getID() - Method in class ome.xml.model.ExperimentRef

getID() - Method in class ome.xml.model.Filter

getID() - Method in class ome.xml.model.FilterRef

getID() - Method in class ome.xml.model.FilterSet

getID() - Method in class ome.xml.model.FilterSetRef

getID() - Method in class ome.xml.model.Image

getID() - Method in class ome.xml.model.ImageRef

getID() - Method in class ome.xml.model.Instrument

getID() - Method in class ome.xml.model.InstrumentRef

getID() - Method in class ome.xml.model.Leader

getID() - Method in class ome.xml.model.LightSource

getID() - Method in class ome.xml.model.LightSourceSettings

getID() - Method in class ome.xml.model.MicrobeamManipulation

getID() - Method in class ome.xml.model.MicrobeamManipulationRef

getID() - Method in class ome.xml.model.Objective

getID() - Method in class ome.xml.model.ObjectiveSettings

getID() - Method in class ome.xml.model.Pixels

getID() - Method in class ome.xml.model.Plate

getID() - Method in class ome.xml.model.PlateAcquisition

getID() - Method in class ome.xml.model.PlateRef

getID() - Method in class ome.xml.model.Project

getID() - Method in class ome.xml.model.ProjectRef

getID() - Method in class ome.xml.model.Pump

getID() - Method in class ome.xml.model.Reagent

getID() - Method in class ome.xml.model.ReagentRef

getID() - Method in class ome.xml.model.Reference

Retrieves the reference's target object ID.

getID() - Method in class ome.xml.model.ROI

getID() - Method in class ome.xml.model.ROIRef

getID() - Method in class ome.xml.model.Screen

getID() - Method in class ome.xml.model.Shape

getID() - Method in class ome.xml.model.Well

getID() - Method in class ome.xml.model.WellSample

getID() - Method in class ome.xml.model.WellSampleRef

getIdInfo() - Method in class loci.plugins.in.ImporterOptions

getIdLocation() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getIdMap() - Static method in class loci.common.Location

Return the id mapping.

getIdMap() - Static method in class ome.scifio.io.Location

Return the id mapping.

getIdName() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getIFD(long) - Method in class loci.formats.tiff.TiffParser

Gets the IFD stored at the given offset.

getIFD() - Method in class ome.xml.model.TiffData

getIFDIntArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in int format from this IFD, performing some error checking.

getIFDIntValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in int format from this IFD, or -1 if the given directory does not exist.

getIFDIntValue(int, int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in int format from this IFD, performing some error checking.

getIFDLongArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in long format from this IFD, performing some error checking.

getIFDLongValue(int, long) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in long format from this IFD, performing some error checking.

getIFDOffsets() - Method in class loci.formats.tiff.TiffParser

Gets the offsets to every IFD in the file.

getIFDRationalValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in rational format from this IFD, performing some error checking.

getIFDs() - Method in class loci.formats.in.MinimalTiffReader

Gets the list of IFDs associated with the current TIFF's image planes.

getIFDs() - Method in class loci.formats.tiff.TiffParser

Returns all IFDs in the file.

getIFDShortArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in short format from this IFD, performing some error checking.

getIFDStringValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value as a string from this IFD, performing some error checking.

getIFDTagName(int) - Static method in class loci.formats.tiff.IFD

Gets the name of the IFD tag encoded by the given number.

getIFDTextValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value as a string (regardless of type).

getIFDValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value from this IFD.

getIFDValue(int, Class) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value from this IFD, performing some error checking.

getIFDValue(TiffIFDEntry) - Method in class loci.formats.tiff.TiffParser

Retrieve the value corresponding to the given TiffIFDEntry.

getIlluminationType(String) - Method in class loci.formats.FormatReader

Retrieves an IlluminationType enumeration value for the given String.

getIlluminationType() - Method in class ome.xml.model.Channel

getImage() - Method in class loci.formats.gui.ImageViewer

Gets the currently displayed image.

getImage(byte[], int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getImage(int) - Method in class ome.xml.model.OME

getImageAcquisitionDate(int) - Method in class loci.formats.meta.AggregateMetadata

getImageAcquisitionDate(int) - Method in class loci.formats.meta.DummyMetadata

getImageAcquisitionDate(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageAcquisitionDate(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getImageAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getImageAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getImageAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getImageAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageCount() - Method in class loci.formats.ChannelMerger

getImageCount() - Method in class loci.formats.ChannelSeparator

getImageCount() - Method in class loci.formats.FileStitcher

getImageCount() - Method in class loci.formats.FormatReader

getImageCount() - Method in interface loci.formats.IFormatReader

Determines the number of image planes in the current file.

getImageCount() - Method in class loci.formats.ImageReader

getImageCount() - Method in class loci.formats.meta.AggregateMetadata

getImageCount() - Method in class loci.formats.meta.DummyMetadata

getImageCount() - Method in interface loci.formats.meta.MetadataRetrieve

getImageCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageCount() - Method in class loci.formats.ReaderWrapper

getImageCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getImageCreationDate() - Method in class loci.formats.in.BaseTiffReader

Retrieves the image creation date.

getImageCreationDate(String[]) - Method in class loci.plugins.macro.LociFunctions

getImageDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getImageDescription(int) - Method in class loci.formats.meta.DummyMetadata

getImageDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageDescription() - Method in class loci.tests.testng.Configuration

getImageDimension(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the dimnsion of the imageIndexth image.

getImageExperimenterGroupRef(int) - Method in class loci.formats.meta.AggregateMetadata

getImageExperimenterGroupRef(int) - Method in class loci.formats.meta.DummyMetadata

getImageExperimenterGroupRef(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageExperimenterGroupRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageExperimenterRef(int) - Method in class loci.formats.meta.AggregateMetadata

getImageExperimenterRef(int) - Method in class loci.formats.meta.DummyMetadata

getImageExperimenterRef(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageExperimenterRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageExperimentRef(int) - Method in class loci.formats.meta.AggregateMetadata

getImageExperimentRef(int) - Method in class loci.formats.meta.DummyMetadata

getImageExperimentRef(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageExperimentRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageID(int) - Method in class loci.formats.meta.AggregateMetadata

getImageID(int) - Method in class loci.formats.meta.DummyMetadata

getImageID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageIndex() - Method in class loci.formats.gui.ImageViewer

Gets the index of the currently displayed image.

getImageInstrumentRef(int) - Method in class loci.formats.meta.AggregateMetadata

getImageInstrumentRef(int) - Method in class loci.formats.meta.DummyMetadata

getImageInstrumentRef(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageInstrumentRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageLength() - Method in class loci.formats.tiff.IFD

Retrieves the image's length (TIFF tag ImageLength) from a given TIFF IFD.

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getImageMicrobeamManipulationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getImageMicrobeamManipulationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getImageMicrobeamManipulationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageMicrobeamManipulationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageName() - Method in class loci.formats.in.MetamorphHandler

getImageName(int) - Method in class loci.formats.meta.AggregateMetadata

getImageName(int) - Method in class loci.formats.meta.DummyMetadata

getImageName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageName() - Method in class loci.tests.testng.Configuration

getImageOffset(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the image offset of the imageIndexth image.

getImageReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getImageROIRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getImageROIRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getImageROIRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageROIRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImageROIRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getImageROIRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getImageROIRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImageROIRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImagesPerFile(String, IFormatReader) - Static method in class loci.formats.FormatTools

getImageType() - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the image type.

getImageType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getImageWidth() - Method in class loci.formats.tiff.IFD

Retrieves the image's width (TIFF tag ImageWidth) from a given TIFF IFD.

getImagingDevice() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the imaging device associated with this Frame.

getImagingEnvironment() - Method in class ome.xml.model.Image

getImagingEnvironmentAirPressure(int) - Method in class loci.formats.meta.AggregateMetadata

getImagingEnvironmentAirPressure(int) - Method in class loci.formats.meta.DummyMetadata

getImagingEnvironmentAirPressure(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImagingEnvironmentAirPressure(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImagingEnvironmentCO2Percent(int) - Method in class loci.formats.meta.AggregateMetadata

getImagingEnvironmentCO2Percent(int) - Method in class loci.formats.meta.DummyMetadata

getImagingEnvironmentCO2Percent(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImagingEnvironmentCO2Percent(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImagingEnvironmentHumidity(int) - Method in class loci.formats.meta.AggregateMetadata

getImagingEnvironmentHumidity(int) - Method in class loci.formats.meta.DummyMetadata

getImagingEnvironmentHumidity(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImagingEnvironmentHumidity(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImagingEnvironmentTemperature(int) - Method in class loci.formats.meta.AggregateMetadata

getImagingEnvironmentTemperature(int) - Method in class loci.formats.meta.DummyMetadata

getImagingEnvironmentTemperature(int) - Method in interface loci.formats.meta.MetadataRetrieve

getImagingEnvironmentTemperature(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getImgHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall height of the image in pixels.

getImgHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall height of the image in pixels, for the given resolution level.

getImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the image height in the reference grid.

getImgHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall height of the image in pixels.

getImgHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall height of the image in pixels, for the given resolution level.

getImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall height of the image in pixels, for the given resolution level.

getImgRes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the image resolution level to reconstruct from the codestream.

getImgULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the horizontal upper-left coordinate of the image in the reference grid.

getImgULX() - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.Tiler

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the vertical upper-left coordinate of the image in the reference grid.

getImgULY() - Method in interface jj2000.j2k.image.ImgData

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.Tiler

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall width of the image in pixels.

getImgWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall width of the image in pixels, for the given (image) resolution level.

getImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the image width in the reference grid.

getImgWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall width of the image in pixels.

getImgWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall width of the image in pixels, for the given resolution level.

getImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall width of the image in pixels, for the given resolution level.

getImmersion(String) - Method in class loci.formats.FormatReader

Retrieves an Immersion enumeration value for the given String.

getImmersion() - Method in class loci.formats.in.ND2Handler

getImmersion() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the immersion from the objective lens string.

getImmersion() - Method in class ome.xml.model.Objective

getImplementationType(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the implementation type of this wavelet transform, WT_IMPL_FULL (full-page based transform).

getImplementationType(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the implementation type of this wavelet transform, WT_IMPL_FULL (full-page based transform).

getImplementationType(int) - Method in interface jj2000.j2k.wavelet.WaveletTransform

Returns the implementation type of this wavelet transform (WT_IMPL_LINE or WT_IMPL_FRAME) for the specified component, in the current tile.

getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getIndent() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get indention (not sure of the units, think its spaces)

getIndention() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the number of spaces to indent the text in the cell

getIndentionOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the indent options bitmask (see corresponding bit getters that reference this field)

getIndex() - Method in class loci.formats.cache.CacheEvent

Gets the index relevant to the cache update, if any.

getIndex(int, int, int) - Method in class loci.formats.ChannelMerger

getIndex(int, int, int) - Method in class loci.formats.ChannelSeparator

getIndex(int, int, int) - Method in class loci.formats.DimensionSwapper

getIndex(int, int, int) - Method in class loci.formats.FileStitcher

getIndex(int, int, int) - Method in class loci.formats.FormatReader

getIndex(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C and T coordinates.

getIndex(String, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C and T coordinates.

getIndex(int, int, int) - Method in interface loci.formats.IFormatReader

Gets the rasterized index corresponding to the given Z, C and T coordinates.

getIndex(int, int, int) - Method in class loci.formats.ImageReader

getIndex() - Method in class loci.formats.in.BaseZeissReader.Tag

getIndex() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the index associated with this Frame.

getIndex(int, int, int) - Method in class loci.formats.ReaderWrapper

getIndex(Double, Double, Double, Double[]) - Method in class loci.plugins.macro.LociFunctions

getIndex() - Method in class loci.poi.hssf.record.SeriesIndexRecord

Get the index field for the SeriesIndex record.

getIndex() - Method in class loci.poi.hssf.record.StyleRecord

get the entire index field (including the type) (see bit getters that reference this method)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the index within the HSSFWorkbook (sequence within the collection of ExtnededFormat objects)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the index within the HSSFWorkbook (sequence within the collection of Font objects)

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AQUA

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLACK

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BROWN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORAL

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

getIndex() - Method in class loci.poi.hssf.util.HSSFColor

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GOLD

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIME

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.MAROON

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PINK

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PLUM

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.RED

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROSE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TAN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TEAL

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.WHITE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW

getIndex() - Method in class loci.poi.poifs.property.Property

get the index for this Property

getIndex(Object) - Method in class loci.poi.util.IntMapper

getIndex() - Method in class ome.xml.model.WellSample

getIndexCode() - Method in class loci.poi.hssf.record.FormatRecord

get the format index code (for built in formats)

getIndexColorModel() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getIndexCount() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the number of recorded indices at this Sequence.

getIndexedImage() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getIndexHash() - Static method in class loci.poi.hssf.util.HSSFColor

this function returns all colors in a hastable.

getIndexMax() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the maximum index value.

getIndexMin() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the minimum index value.

getIndexNumberFmtRecord() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the index number fmt record field for the LinkedData record.

getIndexOfColorValue() - Method in class loci.poi.hssf.record.TextRecord

Get the index of color value field for the Text record.

getIndexOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

The index within the string to which the specified formatting run applies.

getIndexToFirstSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to first sheet from supbook

getIndexToFontTable() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the index to font table field for the FontBasis record.

getIndexToLastSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to last sheet in supbook

getIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord

Convenience method to retrieve the index the name refers to.

getIndexToSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to sup book

getInfo() - Method in class loci.formats.in.SDTReader

Gets object containing SDT header information.

getInfo() - Method in class loci.plugins.prefs.Option

Gets documentation about the option.

getInfo(String) - Method in class loci.plugins.prefs.OptionsList

Gets the documentation for the option with the given key.

getInfoRecordAt(int) - Method in class loci.poi.hssf.record.ExtSSTRecord

getINI() - Method in class loci.tests.testng.Configuration

getInputOrder() - Method in class loci.formats.DimensionSwapper

getInputOrder(int) - Method in class loci.plugins.in.ImporterOptions

getInputStream() - Method in class loci.common.NIOInputStream

Returns the underlying InputStream.

getInputStream() - Method in class loci.common.ZipHandle

Returns the DataInputStream corresponding to the backing Zip entry.

getInputStream(String) - Method in interface loci.formats.services.POIService

Retrieve an InputStream corresponding to the given file name.

getInputStream(String) - Method in class loci.formats.services.POIServiceImpl

getInputStream() - Method in class ome.scifio.io.NIOInputStream

Returns the underlying InputStream.

getInputStream() - Method in class ome.scifio.io.ZipHandle

Returns the DataInputStream corresponding to the backing Zip entry.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Returns a shared instance of a BaselineTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

Returns a shared instance of an EXIFGPSTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

Returns the shared instance of EXIFInteroperabilityTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

Returns a shared instance of an EXIFParentTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

Returns a shared instance of an EXIFTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

Returns a shared instance of a FaxTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

Returns a shared instance of a GeoTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

getInstance() - Static method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat

getInstance(Class<T>) - Method in class loci.common.services.ServiceFactory

Retrieves an instance of a given service.

getInstance(int) - Static method in class loci.formats.gui.TwoChannelColorSpace

getInstance() - Method in class loci.poi.ddf.EscherRecord

Returns the instance part of the option record.

getInstance() - Static method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the singleton instance of the default SectionIDMap.

getInstance() - Static method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getInstance(int) - Static method in class loci.poi.util.BitFieldFactory

getInstitution() - Method in class ome.xml.model.Experimenter

getInstrument() - Method in class ome.xml.model.Detector

getInstrument() - Method in class ome.xml.model.Dichroic

getInstrument() - Method in class ome.xml.model.Filter

getInstrument() - Method in class ome.xml.model.FilterSet

getInstrument() - Method in class ome.xml.model.LightSource

getInstrument() - Method in class ome.xml.model.Objective

getInstrument(int) - Method in class ome.xml.model.OME

getInstrumentCount() - Method in class loci.formats.meta.AggregateMetadata

getInstrumentCount() - Method in class loci.formats.meta.DummyMetadata

getInstrumentCount() - Method in interface loci.formats.meta.MetadataRetrieve

getInstrumentCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getInstrumentID(int) - Method in class loci.formats.meta.AggregateMetadata

getInstrumentID(int) - Method in class loci.formats.meta.DummyMetadata

getInstrumentID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getInstrumentID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getInt(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an int value from a byte array

getInt(byte[]) - Static method in class loci.poi.util.LittleEndian

get an int value from the beginning of a byte array

getIntArray() - Method in class loci.plugins.util.RecordedImageProcessor

getIntArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets the integer array from an IIOMetadataNode.

getIntegration() - Method in class ome.xml.model.DetectorSettings

getIntElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its integer value from an IIOMetadataNode.

getIntellectualProperty() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the IntellectualProperty flag.

getInterleaved() - Method in class ome.xml.model.Pixels

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply the component transformation associated with the current tile.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component, using the 'transfer type' defined in the block given as argument.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply the inverse component transformation associated with the current tile.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns a block of image data containing the specifed rectangular area, in the specified component, as a reference to the internal buffer (see below).

getInterpolate() - Method in class loci.plugins.util.RecordedImageProcessor

getInterpolatedPixel(double, double) - Method in class loci.plugins.util.RecordedImageProcessor

getInts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getInts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getInts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getIris() - Method in class ome.xml.model.Objective

getItalic() - Method in class loci.poi.hssf.usermodel.HSSFFont

get whether to use italics or not

getIteration() - Method in class loci.poi.hssf.record.IterationRecord

get whether or not to iterate for calculations

getIterations() - Method in class loci.poi.hssf.record.CalcCountRecord

get the number of iterations to perform

getIterator() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getIterator() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getIterator() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getJavaDate(double) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a excel date, converts it into a Date.

getJavaDate(double, boolean) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given an Excel date with either 1900 or 1904 date windowing, converts it to a java.util.Date.

getJDKImageReaderWriterSPI(ServiceRegistry, String, boolean) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getJustifyLast() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Dunno.

getKerSpecType(int) - Method in class jj2000.j2k.wavelet.WTFilterSpec

Returns the type of specification for the filters in the specified component and tile.

getKey() - Method in class loci.formats.in.BaseZeissReader.Tag

getKey(int) - Method in class loci.formats.in.BaseZeissReader.Tag

Return the string corresponding to the given ID.

getKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation

getKey() - Method in class loci.plugins.prefs.Option

Gets the option's key name.

getKeyboardShortcut() - Method in class loci.poi.hssf.record.NameRecord

returns the keyboard shortcut

getKeyForValue(Object) - Method in class loci.poi.util.BinaryTree

Returns the key to which this map maps the specified value.

getKeywords() - Method in class loci.poi.hpsf.SummaryInformation

Returns the keywords (or null).

getLabel() - Method in class loci.plugins.prefs.Option

Gets label describing the option.

getLabel(String) - Method in class loci.plugins.prefs.OptionsList

Gets the label for the option with the given key.

getLabelColorRgb() - Method in class loci.poi.hssf.record.TickRecord

Get the label color rgb field for the Tick record.

getLabelFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the label frequency field for the CategorySeriesAxis record.

getLabelID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelID(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelLocked(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelPosition() - Method in class loci.poi.hssf.record.TickRecord

Get the label position field for the Tick record.

getLabels() - Method in class loci.plugins.config.FlexWidgets

getLabels() - Method in interface loci.plugins.config.IFormatWidgets

getLabels() - Method in class loci.plugins.config.ND2Widgets

getLabels() - Method in class loci.plugins.config.PictWidgets

getLabels() - Method in class loci.plugins.config.QTWidgets

getLabels() - Method in class loci.plugins.config.SDTWidgets

getLabels() - Method in class loci.plugins.config.TiffDelegateWidgets

getLabelStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelText(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelText(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelTheC(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelTheT(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelTransform(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelVisible(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelX(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelX(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLabelY(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLabelY(int, int) - Method in class loci.formats.meta.DummyMetadata

getLabelY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLabelY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLandscape() - Method in class loci.poi.hssf.record.PrintSetupRecord

getLandscape() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the landscape mode.

getLaserFrequencyMultiplication(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserFrequencyMultiplication(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserFrequencyMultiplication(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserFrequencyMultiplication(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserID(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserLaserMedium(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserLaserMedium(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserLaserMedium(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserLaserMedium(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserMedium(String) - Method in class loci.formats.FormatReader

Retrieves an LaserMedium enumeration value for the given String.

getLaserMedium() - Method in class ome.xml.model.Laser

getLaserModel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserModel(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserPockelCell(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserPockelCell(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserPockelCell(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserPockelCell(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserPower() - Method in class loci.formats.in.PrairieMetadata

Gets the laserPower_0 recorded in the configuration.

getLaserPower(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserPower(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserPower(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserPower(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserPulse(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserPulse(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserPulse(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserPulse(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserPump(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserPump(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserPump(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserPump(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserRepetitionRate(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserRepetitionRate(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserRepetitionRate(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserRepetitionRate(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserTuneable(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserTuneable(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserTuneable(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserTuneable(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserType(String) - Method in class loci.formats.FormatReader

Retrieves an LaserType enumeration value for the given String.

getLaserType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserType(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLaserWavelength(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLaserWavelength(int, int) - Method in class loci.formats.meta.DummyMetadata

getLaserWavelength(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLaserWavelength(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLast() - Method in class loci.formats.FilePattern

getLast() - Method in class loci.formats.FilePatternBlock

getLastAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last author (or null).

getLastBodyBuf() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the buffer of the body of the last encoded packet.

getLastBodyLen() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the length of the body of the last encoded packet, in bytes.

getLastCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getLastCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

gets the number of the last cell contained in this row PLUS ONE.

getLastChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getLastCol() - Method in class loci.poi.hssf.record.DimensionsRecord

get the last col number for the sheet

getLastCol() - Method in class loci.poi.hssf.record.RowRecord

get the logical col number for the last cell this row plus one (0 based index)

getLastColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the last column this record defines formatting info for

getLastColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getLastColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg

getLastColumn() - Method in class loci.poi.hssf.record.MulBlankRecord

ending column (last cell this holds in the row)

getLastColumn() - Method in class loci.poi.hssf.record.MulRKRecord

ending column (last cell this holds in the row)

getLastColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getLastColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg

getLastMSOSPID() - Method in class loci.poi.ddf.EscherDgRecord

The last shape id used in this drawing group.

getLastName() - Method in class ome.xml.model.Experimenter

getLastPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getLastPrinted() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last printed time (or null).

getLastRow() - Method in class loci.poi.hssf.record.DimensionsRecord

get the last row number for the sheet

getLastRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getLastRow() - Method in class loci.poi.hssf.record.formula.AreaPtg

getLastRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getLastRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getLastRowAdd1() - Method in class loci.poi.hssf.record.IndexRecord

getLastRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getLastRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the last row on the sheet

getLastSaveDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last save time (or null).

getLatestVersion() - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.getLatestVersion() instead.

getLatestVersion() - Method in interface loci.formats.services.OMEXMLService

Retrieves the latest supported version of the OME-XML schema.

getLatestVersion() - Method in class loci.formats.services.OMEXMLServiceImpl

getLayers() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets layers

getLeaderCount(int) - Method in class loci.formats.meta.AggregateMetadata

getLeaderCount(int) - Method in class loci.formats.meta.DummyMetadata

getLeaderCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getLeaderCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLeafChildCount() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

getLeft() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the left side of the footer.

getLeft() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the left side of the header.

getLeft() - Method in class mdbtools.dbengine.sql.Condition

getLeft() - Method in class mdbtools.dbengine.sql.Equation

getLeft() - Method in class mdbtools.dbengine.sql.Join

getLeftBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getLeftBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the left border color

getLeftCol() - Method in class loci.poi.hssf.model.Sheet

getLeftCol() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the leftmost column displayed in the window

getLeftCol() - Method in class loci.poi.hssf.usermodel.HSSFSheet

The left col in the visible view when the sheet is first viewed after opening it in a viewer

getLeftColumn() - Method in class loci.poi.hssf.record.PaneRecord

Get the left column field for the Pane record.

getLeftRowGutter() - Method in class loci.poi.hssf.record.GutsRecord

get the size of the gutter that appears at the left of the rows

getLeftToRight() - Method in class loci.poi.hssf.record.PrintSetupRecord

getLeftToRight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the left to right print order.

getLegacy(M) - Method in class loci.legacy.adapter.AbstractLegacyAdapter

getLegacy(M) - Method in interface loci.legacy.adapter.LegacyAdapter

Used to retrieve the legacy instance associated with a given modern instance.

getLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box length.

getLength() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getLength() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Returns the current length of the buffer, in bytes.

getLength() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Returns the current length of the entire bit stream.

getLength() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Returns the current length of the entire bit stream.

getLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the length of the header.

getLength() - Method in class loci.poi.hssf.record.RecordInputStream

getLength() - Method in class loci.poi.poifs.storage.RawDataBlock

getLength() - Method in class ome.xml.model.BinData

getLengths() - Method in class loci.formats.cache.CacheStrategy

getLengths() - Method in interface loci.formats.cache.ICacheStrategy

Gets the lengths of all the axes.

getLenRefSubexpression() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getLensNA() - Method in class ome.xml.model.Objective

getLetter() - Method in class loci.formats.ResourceNamer

Returns a String representing a single letter (in the case where the class instance has been initialized with a resource count lower than 26) or a concatenation of two letters (if resource count is higher than 26).

getLevels(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the decomposition number of levels in component 'n' and tile 't'.

getLH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the LH (vertical high-pass) child subband of this subband.

getLH() - Method in class jj2000.j2k.wavelet.Subband

Returns the LH (vertical high-pass) child subband of this subband.

getLH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the LH (vertical high-pass) child subband of this subband.

getLicenseCode() - Method in interface loci.formats.services.LuraWaveService

Retrieves the current license code as a string.

getLicenseCode() - Method in class loci.formats.services.LuraWaveServiceImpl

getLightEmittingDiodeID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightEmittingDiodeID(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightEmittingDiodeID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightEmittingDiodeID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightEmittingDiodeLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightEmittingDiodeLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightEmittingDiodeLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightEmittingDiodeLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightEmittingDiodeManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightEmittingDiodeManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightEmittingDiodeManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightEmittingDiodeManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightEmittingDiodeModel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightEmittingDiodeModel(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightEmittingDiodeModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightEmittingDiodeModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightEmittingDiodePower(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightEmittingDiodePower(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightEmittingDiodePower(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightEmittingDiodePower(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightEmittingDiodeSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightEmittingDiodeSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightEmittingDiodeSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightEmittingDiodeSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightPath() - Method in class ome.xml.model.Channel

getLightPathDichroicRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightPathDichroicRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightPathDichroicRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightPathDichroicRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightPathEmissionFilterRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightPathEmissionFilterRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getLightPathEmissionFilterRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightPathEmissionFilterRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightPathEmissionFilterRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightPathEmissionFilterRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightPathEmissionFilterRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightPathEmissionFilterRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightPathExcitationFilterRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightPathExcitationFilterRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getLightPathExcitationFilterRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightPathExcitationFilterRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightPathExcitationFilterRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightPathExcitationFilterRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightPathExcitationFilterRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightPathExcitationFilterRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightSource(int) - Method in class loci.tests.testng.Configuration

getLightSource(int) - Method in class ome.xml.model.Instrument

getLightSource() - Method in class ome.xml.model.LightSourceSettings

getLightSourceCount(int) - Method in class loci.formats.meta.AggregateMetadata

getLightSourceCount(int) - Method in class loci.formats.meta.DummyMetadata

getLightSourceCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightSourceCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLightSourceSettings() - Method in class ome.xml.model.Channel

getLightSourceSettings(int) - Method in class ome.xml.model.MicrobeamManipulation

getLightSourceType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLightSourceType(int, int) - Method in class loci.formats.meta.DummyMetadata

getLightSourceType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLightSourceType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLimit() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getLine(double, double, double, double) - Method in class loci.plugins.util.RecordedImageProcessor

getLineCap(String) - Method in class loci.formats.FormatReader

Retrieves an LineCap enumeration value for the given String.

getLineCap() - Method in class ome.xml.model.Shape

getLineColor() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the line color field for the LineFormat record.

getLineCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the line count or 0 if the DocumentSummaryInformation does not contain a line count.

getLineFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineID(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineLocked(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineMarkerEnd(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineMarkerEnd(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineMarkerEnd(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineMarkerEnd(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineMarkerStart(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineMarkerStart(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineMarkerStart(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineMarkerStart(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLinePattern() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the line pattern field for the LineFormat record.

getLinesPerFrame() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the lines per frame for this Frame.

getLineStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineStyle() - Method in class loci.poi.hssf.usermodel.HSSFShape

getLineStyleColor() - Method in class loci.poi.hssf.usermodel.HSSFShape

The color applied to the lines of this shape.

getLineText(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineText(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineTheC(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineTheT(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineTransform(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineVisible(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineWidth() - Method in class jj2000.j2k.util.MsgPrinter

Returns the line width that is used for formatting.

getLineWidth() - Method in class loci.poi.hssf.usermodel.HSSFShape

getLineX1(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineX1(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineX1(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineX1(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineX2(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineX2(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineX2(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineX2(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineY1(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineY1(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineY1(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineY1(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLineY2(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLineY2(int, int) - Method in class loci.formats.meta.DummyMetadata

getLineY2(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLineY2(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLink1() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the link 1 field for the ObjectLink record.

getLink2() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the link 2 field for the ObjectLink record.

getLinkedAnnotation(int) - Method in class ome.xml.model.Annotation

getLinkedAnnotation(int) - Method in class ome.xml.model.Channel

getLinkedAnnotation(int) - Method in class ome.xml.model.Dataset

getLinkedAnnotation(int) - Method in class ome.xml.model.Experimenter

getLinkedAnnotation(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedAnnotation(int) - Method in class ome.xml.model.Image

getLinkedAnnotation(int) - Method in class ome.xml.model.Pixels

getLinkedAnnotation(int) - Method in class ome.xml.model.Plane

getLinkedAnnotation(int) - Method in class ome.xml.model.Plate

getLinkedAnnotation(int) - Method in class ome.xml.model.PlateAcquisition

getLinkedAnnotation(int) - Method in class ome.xml.model.Project

getLinkedAnnotation(int) - Method in class ome.xml.model.Reagent

getLinkedAnnotation(int) - Method in class ome.xml.model.ROI

getLinkedAnnotation(int) - Method in class ome.xml.model.Screen

getLinkedAnnotation(int) - Method in class ome.xml.model.Well

getLinkedAnnotation(int) - Method in class ome.xml.model.WellSample

getLinkedChannel(int) - Method in class ome.xml.model.Annotation

getLinkedChannel(int) - Method in class ome.xml.model.FilterSet

getLinkedDataset(int) - Method in class ome.xml.model.Annotation

getLinkedDataset(int) - Method in class ome.xml.model.Experimenter

getLinkedDataset(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedDataset(int) - Method in class ome.xml.model.Image

getLinkedDataset(int) - Method in class ome.xml.model.Project

getLinkedDichroic() - Method in class ome.xml.model.FilterSet

getLinkedDichroic() - Method in class ome.xml.model.LightPath

getLinkedEmissionFilter(int) - Method in class ome.xml.model.FilterSet

getLinkedEmissionFilter(int) - Method in class ome.xml.model.LightPath

getLinkedExcitationFilter(int) - Method in class ome.xml.model.FilterSet

getLinkedExcitationFilter(int) - Method in class ome.xml.model.LightPath

getLinkedExperiment(int) - Method in class ome.xml.model.Experimenter

getLinkedExperiment() - Method in class ome.xml.model.Image

getLinkedExperimenter(int) - Method in class ome.xml.model.Annotation

getLinkedExperimenter() - Method in class ome.xml.model.Dataset

getLinkedExperimenter() - Method in class ome.xml.model.Experiment

getLinkedExperimenter(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedExperimenter() - Method in class ome.xml.model.Image

getLinkedExperimenter() - Method in class ome.xml.model.MicrobeamManipulation

getLinkedExperimenter() - Method in class ome.xml.model.Project

getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Annotation

getLinkedExperimenterGroup() - Method in class ome.xml.model.Dataset

getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Experimenter

getLinkedExperimenterGroup() - Method in class ome.xml.model.Image

getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Leader

getLinkedExperimenterGroup() - Method in class ome.xml.model.Project

getLinkedFilterSet() - Method in class ome.xml.model.Channel

getLinkedFilterSet(int) - Method in class ome.xml.model.Dichroic

getLinkedFilterSetEmissionFilter(int) - Method in class ome.xml.model.Filter

getLinkedFilterSetExcitationFilter(int) - Method in class ome.xml.model.Filter

getLinkedImage(int) - Method in class ome.xml.model.Annotation

getLinkedImage(int) - Method in class ome.xml.model.Dataset

getLinkedImage(int) - Method in class ome.xml.model.Experiment

getLinkedImage(int) - Method in class ome.xml.model.Experimenter

getLinkedImage(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedImage(int) - Method in class ome.xml.model.Instrument

getLinkedImage(int) - Method in class ome.xml.model.MicrobeamManipulation

getLinkedImage(int) - Method in class ome.xml.model.ROI

getLinkedImage() - Method in class ome.xml.model.WellSample

getLinkedInstrument() - Method in class ome.xml.model.Image

getLinkedLaser(int) - Method in class ome.xml.model.Pump

getLinkedLeader(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedLightPath(int) - Method in class ome.xml.model.Dichroic

getLinkedLightPathEmissionFilter(int) - Method in class ome.xml.model.Filter

getLinkedLightPathExcitationFilter(int) - Method in class ome.xml.model.Filter

getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Experimenter

getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Image

getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.ROI

getLinkedPixels(int) - Method in class ome.xml.model.Annotation

getLinkedPlane(int) - Method in class ome.xml.model.Annotation

getLinkedPlate(int) - Method in class ome.xml.model.Annotation

getLinkedPlate(int) - Method in class ome.xml.model.Screen

getLinkedPlateAcquisition(int) - Method in class ome.xml.model.Annotation

getLinkedPlateAcquisition(int) - Method in class ome.xml.model.WellSample

getLinkedProject(int) - Method in class ome.xml.model.Annotation

getLinkedProject(int) - Method in class ome.xml.model.Dataset

getLinkedProject(int) - Method in class ome.xml.model.Experimenter

getLinkedProject(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedPump() - Method in class ome.xml.model.Laser

getLinkedReagent(int) - Method in class ome.xml.model.Annotation

getLinkedReagent() - Method in class ome.xml.model.Well

getLinkedROI(int) - Method in class ome.xml.model.Annotation

getLinkedROI(int) - Method in class ome.xml.model.Image

getLinkedROI(int) - Method in class ome.xml.model.MicrobeamManipulation

getLinkedScreen(int) - Method in class ome.xml.model.Annotation

getLinkedScreen(int) - Method in class ome.xml.model.Plate

getLinkedWell(int) - Method in class ome.xml.model.Annotation

getLinkedWell(int) - Method in class ome.xml.model.Reagent

getLinkedWellSample(int) - Method in class ome.xml.model.Annotation

getLinkedWellSample(int) - Method in class ome.xml.model.Image

getLinkedWellSample(int) - Method in class ome.xml.model.PlateAcquisition

getLinksDirty() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns true if the custom links are dirty.

getLinkType() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the link type field for the LinkedData record.

getListAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getListAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getListAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getListAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getListAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getListAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getListAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getListAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getListAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getListAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getListAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getListAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getListAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getListAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getListAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getListAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getListAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getListAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getListAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getListAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getListAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getListAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getListAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getListAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getListAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getListAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getListAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getListAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getListAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the LL child subband of this subband.

getLL() - Method in class jj2000.j2k.wavelet.Subband

Returns the LL child subband of this subband.

getLL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the LL child subband of this subband.

getLoadList(int[]) - Method in class loci.formats.cache.CacheStrategy

getLoadList(int[]) - Method in interface loci.formats.cache.ICacheStrategy

Gets the indices of the objects to cache, surrounding the object at the given position.

getLoc() - Method in class loci.poi.hssf.model.Sheet

Returns the location pointer to the first record to look for when adding rows/values

getLocalFilePath(int) - Method in class loci.formats.ome.OmeisImporter

Deprecated.

Gets path to original file corresponding to the given file ID.

getLocalPixelsPath(int) - Method in class loci.formats.ome.OmeisImporter

Deprecated.

Gets path to Pixels file corresponding to the given pixels ID.

getLocation() - Method in class loci.plugins.in.ImporterOptions

getLocationFromResourceName(Location, String, int, String) - Method in class loci.formats.ResourceNamer

Creates a new Location instance using the provided parent path and child node name.

getLocationInfo() - Method in class loci.plugins.in.ImporterOptions

getLocations() - Method in class loci.plugins.in.ImporterOptions

getLocked() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the cell's using this style are to be locked

getLocked() - Method in class ome.xml.model.Shape

getLogger(Class) - Static method in class loci.poi.util.POILogFactory

Get a logger, based on a class name

getLogger(String) - Static method in class loci.poi.util.POILogFactory

Get a logger, based on a String

getLong(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a long value from a byte array

getLong(byte[]) - Static method in class loci.poi.util.LittleEndian

get a long value from the beginning of a byte array

getLongAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getLongAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getLongAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getLongAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getLongAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLongAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getLongAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getLongAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getLongAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLongAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getLongAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getLongAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getLongAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLongAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getLongAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getLongAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getLongAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLongAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getLongAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getLongAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getLongAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLongAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getLongAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getLongAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getLongAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLongAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getLongAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getLongAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getLongAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLongAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata

getLongAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata

getLongAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve

getLongAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Convers an Index16ColorModel to a 2D short array.

getLookupTable() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the color lookup table stored in the file, or null if a lookup table is not present.

getLossless() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets lossless.

getLossless() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets encodingRate

getLotNumber() - Method in class ome.xml.model.ManufacturerSpec

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.

getLPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the equivalent low-pass synthesis waveform of a cascade of filters, given the syhthesis waveform of the previous stage.

getLUT() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the LUT.

getLutNames() - Method in class loci.formats.in.LeicaHandler

getLutUpdateMode() - Method in class loci.plugins.util.RecordedImageProcessor

getMagnification(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getMagnification() - Method in class loci.formats.in.ND2Handler

getMagnification() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the magnification from the objective lens string.

getMainDefDecompType() - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the main default decomposition type.

getMainDefLevels() - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the main default decomposition number of levels.

getMajorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the major increment field for the ValueRange record.

getMajorTickType() - Method in class loci.poi.hssf.record.TickRecord

Get the major tick type field for the Tick record.

getMajorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the major unit field for the AxisOptions record.

getMajorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the major unit value field for the AxisOptions record.

getManager() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the manager (or null).

getManufacturer() - Method in class ome.xml.model.ManufacturerSpec

getMap() - Method in class loci.formats.tools.AmiraParameters

getMappedFile(String) - Static method in class loci.common.Location

Gets the random access handle for the given id.

getMappedFile(String) - Static method in class ome.scifio.io.Location

Gets the random access handle for the given id.

getMappedId(String) - Static method in class loci.common.Location

Gets the actual filename on disk for the given id.

getMappedId(String) - Static method in class ome.scifio.io.Location

Gets the actual filename on disk for the given id.

getMargin(short) - Method in class loci.poi.hssf.model.Sheet

Gets the size of the margin in inches.

getMargin() - Method in class loci.poi.hssf.record.BottomMarginRecord

Get the margin field for the BottomMargin record.

getMargin() - Method in class loci.poi.hssf.record.LeftMarginRecord

Get the margin field for the LeftMargin record.

getMargin() - Method in interface loci.poi.hssf.record.Margin

Get the margin field for the Margin.

getMargin() - Method in class loci.poi.hssf.record.RightMarginRecord

Get the margin field for the RightMargin record.

getMargin() - Method in class loci.poi.hssf.record.TopMarginRecord

Get the margin field for the TopMargin record.

getMargin(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the size of the margin in inches.

getMarginBottom() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

Gets the bottom margin within the textbox.

getMarginLeft() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getMarginRight() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getMargins() - Method in class loci.poi.hssf.model.Sheet

Returns the array of margins.

getMarginTop() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getMarker(String) - Method in class loci.formats.FormatReader

Retrieves an Marker enumeration value for the given String.

getMarker() - Method in class loci.poi.ddf.EscherBitmapBlip

getMarkerEnd() - Method in class ome.xml.model.Line

getMarkerEnd() - Method in class ome.xml.model.Polyline

getMarkerStart() - Method in class ome.xml.model.Line

getMarkerStart() - Method in class ome.xml.model.Polyline

getMask() - Method in class loci.plugins.util.RecordedImageProcessor

getMask() - Method in class ome.xml.model.BinData

getMaskArray() - Method in class loci.plugins.util.RecordedImageProcessor

getMaskFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskHeight(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskHeight(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskHeight(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskHeight(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskID(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskLocked(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskText(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskText(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskTheC(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskTheT(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskTransform(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskVisible(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskX(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskX(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMaskY(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMaskY(int, int) - Method in class loci.formats.meta.DummyMetadata

getMaskY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMaskY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMax() - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each tile-component

getMax() - Method in class loci.plugins.util.RecordedImageProcessor

getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Returns the number of bytes remaining available in the bit stream.

getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Returns the number of bytes remaining available in the bit stream.

getMaxCBlkHeight() - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the maximum code-block's height

getMaxCBlkWidth() - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the maximum code-block's width

getMaxChange() - Method in class loci.poi.hssf.record.DeltaRecord

get the maximum change

getMaxCompHeight() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getMaxCompImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the maximum height among all components

getMaxCompImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the maximum width among all components

getMaxCompWidth() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getMaxFieldCount(Integer) - Static method in class loci.formats.FormatTools

getMaximumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the maximum axis value field for the ValueRange record.

getMaximumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the maximum category field for the AxisOptions record.

getMaximumFieldCount() - Method in class ome.xml.model.PlateAcquisition

getMaximumSize() - Method in class loci.formats.gui.CacheIndicator

getMaxInComp(int) - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each tile for specified component

getMaxInTile(int) - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each component in specified tile

getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the maximum number of magnitude bits in any subband in the current tile.

getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband of the current tile.

getMaxThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

getMaxTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the horizontal index of the rightmost column of tiles.

getMaxTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the vertical index of the bottom row of tiles.

getMaxValue() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getMaxX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the column immediatetely to the right of the rightmost column of the image.

getMaxY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the Y coordinate of the row immediately below the bottom row of the image.

getMD5() - Method in class loci.tests.testng.Configuration

getMedium(String) - Method in class loci.formats.FormatReader

Retrieves an Medium enumeration value for the given String.

getMedium() - Method in class ome.xml.model.ObjectiveSettings

getMemoFile(String) - Method in class loci.formats.Memoizer

Constructs a File object from setId string.

getMemory() - Method in class loci.tests.testng.Configuration

getMemoryUsage() - Method in class loci.plugins.in.ImportProcess

Gets a projection of required memory in bytes.

getMergeCells() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to merge cells

getMergedRegionAt(int) - Method in class loci.poi.hssf.model.Sheet

getMergedRegionAt(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the region at a particular index

getMessage() - Method in enum loci.plugins.in.ImportStep

getMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the current IIOMetadata object.

getMetadata() - Method in class loci.formats.FormatReader

Deprecated.

getMetadata() - Method in interface loci.formats.IFormatReader

Deprecated.

Use #getGlobalMetadata() or #getSeriesMetadata() instead.

getMetadata() - Method in class loci.formats.ImageReader

Deprecated.

getMetadata() - Method in class loci.formats.in.ND2Handler

getMetadata() - Method in class loci.formats.ReaderWrapper

Deprecated.

getMetadataFile() - Method in class ome.xml.model.BinaryOnly

getMetadataLevel() - Method in class loci.formats.in.DefaultMetadataOptions

getMetadataLevel() - Method in interface loci.formats.in.MetadataOptions

getMetadataOnly() - Method in class ome.xml.model.Pixels

getMetadataOptions() - Method in class loci.formats.DelegateReader

getMetadataOptions() - Method in class loci.formats.FormatReader

getMetadataOptions() - Method in class loci.formats.ImageReader

getMetadataOptions() - Method in interface loci.formats.IMetadataConfigurable

getMetadataOptions() - Method in class loci.formats.ReaderWrapper

getMetadataRetrieve() - Method in class loci.formats.FormatWriter

getMetadataRetrieve() - Method in interface loci.formats.IFormatWriter

Retrieves the current metadata retrieval object for this writer.

getMetadataRetrieve() - Method in class loci.formats.ImageWriter

getMetadataRetrieve() - Method in class loci.formats.WriterWrapper

getMetadataStore() - Method in class loci.formats.FileStitcher

getMetadataStore() - Method in class loci.formats.FormatReader

getMetadataStore() - Method in interface loci.formats.IFormatReader

Retrieves the current metadata store for this reader.

getMetadataStore() - Method in class loci.formats.ImageReader

getMetadataStore() - Method in class loci.formats.Memoizer

getMetadataStore() - Method in class loci.formats.ReaderWrapper

getMetadataStoreForConversion() - Method in class loci.formats.in.OMETiffReader

Returns a MetadataStore that is populated in such a way as to be usable by an IFormatWriter.

getMetadataStoreForDisplay() - Method in class loci.formats.in.OMETiffReader

Returns a MetadataStore that is populated in such a way as to produce valid OME-XML.

getMetadataStoreRoot() - Method in class loci.formats.FileStitcher

getMetadataStoreRoot() - Method in class loci.formats.FormatReader

getMetadataStoreRoot() - Method in interface loci.formats.IFormatReader

Retrieves the current metadata store's root object.

getMetadataStoreRoot() - Method in class loci.formats.ImageReader

getMetadataStoreRoot() - Method in class loci.formats.ReaderWrapper

getMetadataString(String) - Method in class loci.plugins.in.ImporterMetadata

Returns a string with each key/value pair on its own line.

getMetadataType() - Method in enum loci.formats.tiff.PhotoInterp

Retrieves the metadata type of the photometric interpretation.

getMetadataValue(String) - Method in class loci.formats.FormatReader

getMetadataValue(String) - Method in interface loci.formats.IFormatReader

Obtains the specified metadata field's value for the current file.

getMetadataValue(String) - Method in class loci.formats.ImageReader

getMetadataValue(String) - Method in class loci.formats.ReaderWrapper

getMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions

getMethod() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the method to define the color space.

getMethodForMQLengthCalc() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets methodForMQLengthCalc

getMethodForMQTermination() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets methodForMQTermination

getMethodStack() - Method in class loci.plugins.util.BFVirtualStack

getMethodStack() - Method in class loci.plugins.util.RecordedImageProcessor

getMicrobeamManipulation(int) - Method in class ome.xml.model.Experiment

getMicrobeamManipulation() - Method in class ome.xml.model.LightSourceSettings

getMicrobeamManipulationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationCount(int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationDescription(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationDescription(int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationDescription(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationDescription(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationExperimenterRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationExperimenterRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationExperimenterRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationExperimenterRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationID(int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationROIRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationROIRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationROIRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationROIRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationROIRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationROIRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationROIRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationROIRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicrobeamManipulationType(String) - Method in class loci.formats.FormatReader

Retrieves an MicrobeamManipulationType enumeration value for the given String.

getMicrobeamManipulationType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getMicrobeamManipulationType(int, int) - Method in class loci.formats.meta.DummyMetadata

getMicrobeamManipulationType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicronsPerPixelX() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the microns per pixel along X for this Frame.

getMicronsPerPixelY() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the microns per pixel along Y for this Frame.

getMicroscope() - Method in class ome.xml.model.Instrument

getMicroscopeLotNumber(int) - Method in class loci.formats.meta.AggregateMetadata

getMicroscopeLotNumber(int) - Method in class loci.formats.meta.DummyMetadata

getMicroscopeLotNumber(int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicroscopeLotNumber(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicroscopeManufacturer(int) - Method in class loci.formats.meta.AggregateMetadata

getMicroscopeManufacturer(int) - Method in class loci.formats.meta.DummyMetadata

getMicroscopeManufacturer(int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicroscopeManufacturer(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicroscopeModel(int) - Method in class loci.formats.meta.AggregateMetadata

getMicroscopeModel(int) - Method in class loci.formats.meta.DummyMetadata

getMicroscopeModel(int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicroscopeModel(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicroscopeSerialNumber(int) - Method in class loci.formats.meta.AggregateMetadata

getMicroscopeSerialNumber(int) - Method in class loci.formats.meta.DummyMetadata

getMicroscopeSerialNumber(int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicroscopeSerialNumber(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMicroscopeType(String) - Method in class loci.formats.FormatReader

Retrieves an MicroscopeType enumeration value for the given String.

getMicroscopeType(int) - Method in class loci.formats.meta.AggregateMetadata

getMicroscopeType(int) - Method in class loci.formats.meta.DummyMetadata

getMicroscopeType(int) - Method in interface loci.formats.meta.MetadataRetrieve

getMicroscopeType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getMiddleName() - Method in class ome.xml.model.Experimenter

getMillisFromTicks(long, long) - Static method in class loci.common.DateTools

Converts from two-word tick representation to milliseconds.

getMillisFromTicks(long, long) - Static method in class ome.scifio.common.DateTools

Converts from two-word tick representation to milliseconds.

getMIMEType() - Method in class ome.xml.model.BinaryFile

getMin() - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each tile-component

getMin() - Method in class loci.plugins.util.RecordedImageProcessor

getMinimumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the minimum axis value field for the ValueRange record.

getMinimumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minimum category field for the AxisOptions record.

getMinimumSize() - Method in class loci.formats.gui.CacheIndicator

getMinInComp(int) - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each tile for specified component

getMinInTile(int) - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each component in specified tile

getMinMaxCalculator() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getMinMaxStore() - Method in class loci.formats.MinMaxCalculator

Retrieves the current active min-max store for the calculator.

getMinorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the minor increment field for the ValueRange record.

getMinorTickType() - Method in class loci.poi.hssf.record.TickRecord

Get the minor tick type field for the Tick record.

getMinorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minor unit field for the AxisOptions record.

getMinorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minor unit value field for the AxisOptions record.

getMinorVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the minor version of this file type box.

getMinThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

getMinTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the horizontal index of the leftmost column of tiles.

getMinTileX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMinTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the vertical index of the uppermost row of tiles.

getMinTileY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMinX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the leftmost column of the image.

getMinX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets minX

getMinX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMinY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the uppermost row of the image.

getMinY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets minY

getMinY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMMClipCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the mmclip count or 0 if the DocumentSummaryInformation does not contain a mmclip count.

getModalities() - Method in class loci.formats.in.ND2Handler

getModality(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getMode() - Method in class loci.poi.hssf.record.RefModeRecord

get the reference mode to use (HSSF uses/assumes A1)

getModel() - Method in class ome.xml.model.ManufacturerSpec

getModelObject(String) - Method in interface ome.xml.model.OMEModel

getModelObject(String) - Method in class ome.xml.model.OMEModelImpl

getModelObjects() - Method in interface ome.xml.model.OMEModel

getModelObjects() - Method in class ome.xml.model.OMEModelImpl

getModern(L) - Method in class loci.legacy.adapter.AbstractLegacyAdapter

getModern(L) - Method in interface loci.legacy.adapter.LegacyAdapter

Used to retrieve the modern instance associated with a given legacy instance.

getModuloAlongC(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongC annotation in the given Image in the given OME-XML metadata object.

getModuloAlongC(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

getModuloAlongT(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongT annotation in the given Image in the given OME-XML metadata object.

getModuloAlongT(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

getModuloAlongZ(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongZ annotation in the given Image in the given OME-XML metadata object.

getModuloAlongZ(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

getModuloC() - Method in class loci.formats.FormatReader

getModuloC() - Method in interface loci.formats.IFormatReader

getModuloC() - Method in class loci.formats.ImageReader

getModuloC() - Method in class loci.formats.ReaderWrapper

getModuloT() - Method in class loci.formats.FormatReader

getModuloT() - Method in interface loci.formats.IFormatReader

getModuloT() - Method in class loci.formats.ImageReader

getModuloT() - Method in class loci.formats.ReaderWrapper

getModuloZ() - Method in class loci.formats.FormatReader

getModuloZ() - Method in interface loci.formats.IFormatReader

getModuloZ() - Method in class loci.formats.ImageReader

getModuloZ() - Method in class loci.formats.ReaderWrapper

getMsgLogger() - Static method in class jj2000.j2k.util.FacilityManager

Returns the MsgLogger registered with the current thread (the thread that calls this method).

getMsgLogger(Thread) - Static method in class jj2000.j2k.util.FacilityManager

Returns the MsgLogger registered with the thread 't' (the thread that calls this method).

getNA(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getName() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the name of the tag, as it will appear in image metadata.

getName(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the XML tag name defined in JP2 XML xsd/dtd for the box with the provided type.

getName() - Method in class loci.common.Location

Returns the name of this file, i.e.

getName() - Method in enum loci.formats.codec.JPEG2000BoxType

Returns the name of the box type.

getName() - Method in enum loci.formats.codec.JPEG2000SegmentMarker

Returns the name of the segment marker.

getName(int) - Method in class loci.formats.gui.TwoChannelColorSpace

getName() - Method in enum loci.formats.tiff.PhotoInterp

Retrieves the given name of the photometric interpretation.

getName() - Method in class loci.poi.ddf.EscherBSERecord

The length in characters of the blip name.

getName() - Method in class loci.poi.ddf.EscherProperty

getName() - Method in class loci.poi.hpsf.CustomProperty

Gets the property's name.

getName() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getName() - Method in class loci.poi.hssf.record.StyleRecord

get the style's name

getName() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

getName() - Method in interface loci.poi.poifs.filesystem.Entry

get the name of the Entry

getName() - Method in class loci.poi.poifs.filesystem.EntryNode

get the name of the Entry

getName() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getName() - Method in class loci.poi.poifs.property.Property

Get the name of this property

getName() - Method in interface mdbtools.dbengine.Table

getName() - Method in class ome.metakit.Column

Retrieve the name of the column.

getName() - Method in class ome.scifio.io.Location

Returns the name of this file, i.e.

getName() - Method in class ome.xml.model.Channel

getName() - Method in class ome.xml.model.Dataset

getName() - Method in class ome.xml.model.ExperimenterGroup

getName() - Method in class ome.xml.model.Image

getName() - Method in class ome.xml.model.Plate

getName() - Method in class ome.xml.model.PlateAcquisition

getName() - Method in class ome.xml.model.Project

getName() - Method in class ome.xml.model.Reagent

getName() - Method in class ome.xml.model.ROI

getName() - Method in class ome.xml.model.Screen

getName() - Method in class ome.xml.model.StageLabel

getNameAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the Named range

getNameDefinition() - Method in class loci.poi.hssf.record.NameRecord

gets the definition, reference (Formula)

getNameIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the named range index by his name Note:Excel named ranges are case-insensitive and this method performs a case-insensitive search.

getNameLength() - Method in class loci.poi.hssf.record.StyleRecord

if this is a user defined record get the length of the style name

getNameName() - Method in class loci.poi.hssf.usermodel.HSSFName

gets the name of the named range

getNameName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the named range name

getNamepos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the namepos.

getNameRecord(int) - Method in class loci.poi.hssf.model.Workbook

gets the name record

getNamespace() - Method in class ome.xml.model.Annotation

getNamespace() - Method in class ome.xml.model.ROI

getNameText() - Method in class loci.poi.hssf.record.NameRecord

gets the name

getNameTextLength() - Method in class loci.poi.hssf.record.NameRecord

gets the name length

getNamingConvention(String) - Method in class loci.formats.FormatReader

Retrieves an NamingConvention enumeration value for the given String.

getNANData() - Method in class loci.poi.hssf.record.RecordInputStream

getNativeDataType() - Method in class loci.formats.ChannelFiller

getNativeDataType() - Method in class loci.formats.ChannelMerger

getNativeDataType() - Method in class loci.formats.ChannelSeparator

getNativeDataType() - Method in class loci.formats.FormatHandler

getNativeDataType() - Method in interface loci.formats.IFormatHandler

Returns the native data type of image planes for this reader, as returned by IFormatReader.openPlane(int, int, int, int, int) or IFormatWriter.savePlane(int, java.lang.Object).

getNativeDataType() - Method in class loci.formats.ImageReader

getNativeDataType() - Method in class loci.formats.ImageWriter

getNativeDataType() - Method in class loci.formats.in.BIFormatReader

getNativeDataType() - Method in class loci.formats.in.TextReader

getNativeDataType() - Method in class loci.formats.MinMaxCalculator

getNativeDataType() - Method in class loci.formats.out.ImageIOWriter

getNativeDataType() - Method in class loci.formats.out.LegacyQTWriter

getNativeDataType() - Method in class loci.formats.ReaderWrapper

getNativeDataType() - Method in class loci.formats.TileStitcher

getNativeDataType() - Method in class loci.formats.WriterWrapper

getNativeDataType() - Method in class loci.plugins.util.ImageProcessorReader

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates an IIOMetadataNode from this box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Creates an IIOMetadataNode from this channel definition box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates an IIOMetadataNode from this color specification box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Creates an IIOMetadataNode from this component mapping box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Creates an IIOMetadataNode from this data entry URL box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Creates an IIOMetadataNode from this file type box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Creates an IIOMetadataNode from this image header box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

creates an IIOMetadataNode from this palette box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Creates an IIOMetadataNode from this resolution box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

Creates an IIOMetadataNode from this signature box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Creates an IIOMetadataNode from this UUID box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

Creates an IIOMetadataNode from this UUID list box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

Creates an IIOMetadataNode from this XML box.

getNativeNodeForSimpleBox() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates an IIOMetadataNode from this box.

getNChannels() - Method in class loci.plugins.util.RecordedImageProcessor

getNDFilter() - Method in class ome.xml.model.Channel

getNewCOC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COC

getNewCOD() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COD

getNewCOM() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COM

getNewCRG() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of CRG

getNewPOC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of POC

getNewQCC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of QCC

getNewQCD() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of QCD

getNewRGN() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of RGN

getNewSIZ() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of SIZ

getNewSOT() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of SOT

getNextChild() - Method in interface loci.poi.poifs.property.Child

Get the next Child, if any

getNextChild() - Method in class loci.poi.poifs.property.Property

Get the next Child, if any

getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

getNextCodeBlock(int, CBlkRateDistStats) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the next coded code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkRateDistStats) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the next coded code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function gets a datablk from the entropy coder.

getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc

Returns the next code-block in the current tile for the specified component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the next code-block in the current tile for the specified component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function gets a datablk from the entropy coder.

getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the next code-block in the current tile for the specified component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next code-block in the current tile for the specified component.

getNextResLevel() - Method in class jj2000.j2k.wavelet.Subband

Returns the first leaf subband element in the next higher resolution level.

getNextRow() - Method in class loci.poi.hssf.model.Sheet

get the NEXT RowRecord (from LOC).

getNextSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getNextValueRecord() - Method in class loci.poi.hssf.model.Sheet

get the NEXT value record (from LOC).

getNoColor() - Method in class loci.poi.hssf.record.PrintSetupRecord

getNoColor() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the black and white setting.

getNominalMagnification() - Method in class ome.xml.model.Objective

getNomRangeBits(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of bits corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component and in the current tile.

getNomRangeBits(int) - Method in interface jj2000.j2k.image.ImgData

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the image data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the image data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns the number of bits corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the nominal tile height

getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the nominal width of the tiles in the reference grid.

getNomTileHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.Tiler

Returns the nominal width of the tiles in the reference grid.

getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the nominal height of tiles

getNomTileHeight() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the nominal tiles height

getNomTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the nominal tile width

getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the nominal width of the tiles in the reference grid.

getNomTileWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.Tiler

Returns the nominal width of the tiles in the reference grid.

getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the nominal width of tiles

getNomTileWidth() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the nominal tiles width

getNonThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser

Returns non-thumbnail IFDs.

getNoOrientation() - Method in class loci.poi.hssf.record.PrintSetupRecord

getNoOrientation() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the no orientation.

getNOptPoints() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the number of layers to optimize, or optimization points, as specified by this object.

getNormalZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the zoom magnification in normal view

getNoROIDescaling() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Gets noROIDescaling

getNoteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the note count or 0 if the DocumentSummaryInformation does not contain a note count.

getNoteRecord() - Method in class loci.poi.hssf.model.CommentShape

Return the NoteRecord holding the comment attributes

getNotes() - Method in class loci.poi.hssf.record.PrintSetupRecord

getNotes() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the print notes.

getNoWlzMsg() - Method in interface loci.formats.services.WlzService

Gets the text string for when Woolz has not been found.

getNoWlzMsg() - Method in class loci.formats.services.WlzServiceImpl

getNumAreas() - Method in class loci.poi.hssf.record.MergeCellsRecord

get the number of merged areas.

getNumAxis() - Method in class loci.poi.hssf.record.AxisUsedRecord

Get the num axis field for the AxisUsed record.

getNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the integer used to represent the tag.

getNumber(String) - Method in class loci.formats.NumberFilter

Gets numbers filling the asterisk positions.

getNumberOfBuiltinBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the number of builtin and reserved builtinFormats

getNumberOfElementsInArray() - Method in class loci.poi.ddf.EscherArrayProperty

getNumberOfElementsInMemory() - Method in class loci.poi.ddf.EscherArrayProperty

getNumberOfExpressionTokens() - Method in class loci.poi.hssf.record.FormulaRecord

get the size of the stack

getNumberOfFontRecords() - Method in class loci.poi.hssf.model.Workbook

gets the number of font records

getNumberOfFonts() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of fonts in the font table

getNumberOfInfoRecsForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord

getNumberOfNames() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the total number of named ranges in the workboko

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AddPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AttrPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ConcatPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.DividePtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.EqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the number of operands for the Less than operator

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the number of operands for the Less than operator

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.OperationPtg

The number of operands expected by the operations

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PercentPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PowerPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.RangePtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.SubtractPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnionPtg

getNumberOfSheets() - Method in class loci.poi.hssf.record.SupBookRecord

getNumberOfSheets() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of spreadsheets in the workbook (this will be three after serialization)

getNumBreaks() - Method in class loci.poi.hssf.record.PageBreakRecord

getNumBubbleValues() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num bubble values field for the Series record.

getNumCategories() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num categories field for the Series record.

getNumCellOffsets() - Method in class loci.poi.hssf.record.DBCellRecord

get the number of cell offsets in the celloffset array

getNumCellStyles() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of styles the workbook contains

getNumCodedBytes() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Returns the number of bytes that are necessary from the compressed output stream to decode all the symbols that have been coded this far.

getNumColumnBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns the number of column page breaks

getNumColumns() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getNumColumns() - Method in class loci.poi.hssf.record.MulBlankRecord

get the number of columns this contains (last-first +1)

getNumColumns() - Method in class loci.poi.hssf.record.MulRKRecord

get the number of columns this contains (last-first +1)

getNumCOM() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns the number of found COM marker segments

getNumComp() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the number of color components.

getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the number of image components.

getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets the number of components

getNumComponents() - Method in class loci.formats.gui.TwoChannelColorSpace

getNumComps() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the number of components in the image.

getNumComps() - Method in interface jj2000.j2k.image.ImgData

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.input.ImgReader

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the number of components in the image.

getNumComps() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the number of components in the image.

getNumCtxts() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Returns the number of contexts in the arithmetic coder.

getNumCtxts() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Returns the number of contexts in the arithmetic coder.

getNumDbcells() - Method in class loci.poi.hssf.record.IndexRecord

getNumDecompositionLevels() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets numDecompositionLevels.

getNumEntries() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the number of palette entries.

getNumerator() - Method in class loci.formats.tiff.TiffRational

Gets this number's numerator.

getNumerator() - Method in class loci.poi.hssf.record.SCLRecord

Get the numerator field for the SCL record.

getNumericalAperture() - Method in class loci.formats.in.ND2Handler

getNumericCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a number.

getNumericFields(GenericDialog) - Static method in class loci.plugins.util.WindowTools

getNumExFormats() - Method in class loci.poi.hssf.model.Workbook

get the number of ExtendedFormat records contained in this workbook.

getNumFoundMarkSeg() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the number of found marker segments in the current header.

getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC

getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD

getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the number of guard bits used by this quantizer in the given tile-component.

getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the number of guard bits used by this quantizer in the given tile-component.

getNumIdClusters() - Method in class loci.poi.ddf.EscherDggRecord

Number of id clusters + 1

getNumImages() - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the number of images in the ImageInputStream.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

Overrides the method defined in the superclass.

getNumInfoRecords() - Method in class loci.poi.hssf.record.ExtSSTRecord

getNumLayers() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Returns the number of layers that are actually generated.

getNumMergedRegions() - Method in class loci.poi.hssf.model.Sheet

getNumMergedRegions() - Method in class loci.poi.hssf.usermodel.HSSFSheet

returns the number of merged regions

getNumNames() - Method in class loci.poi.hssf.model.Workbook

gets the total number of names

getNumOfREFRecords() - Method in class loci.poi.hssf.record.ExternSheetRecord

returns the number of REF Records, which is in model

getNumOfREFStructures() - Method in class loci.poi.hssf.record.ExternSheetRecord

return the number of the REF structors , that is in Excel file

getNumPrecinct(int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Gets the number of precincts in a given component and resolution level.

getNumRecords() - Method in class loci.poi.hssf.model.Sheet

Returns the number of low level binary records in this sheet.

getNumRecords() - Method in class loci.poi.hssf.model.Workbook

getNumRefs() - Method in class loci.poi.hssf.record.SelectionRecord

get the number of cell refs (we don't support selection so set to 0

getNumRowBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns the number of row page breaks

getNumSelectedTabs() - Method in class loci.poi.hssf.record.WindowOneRecord

get the number of selected tabs

getNumSeries() - Method in class loci.formats.in.LegacyND2Reader

getNumShapeIdsUsed() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster

getNumShapes() - Method in class loci.poi.ddf.EscherDgRecord

The number of shapes in this drawing group.

getNumShapesSaved() - Method in class loci.poi.ddf.EscherDggRecord

getNumSheets() - Method in class loci.poi.hssf.model.Workbook

returns the number of boundsheet objects contained in this workbook.

getNumStrings() - Method in class loci.poi.hssf.record.SSTRecord

getNumStringsPerBucket() - Method in class loci.poi.hssf.record.ExtSSTRecord

getNumThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getNumTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the number of TIFFFields in this directory.

getNumTileParts(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Returns the number of tile-part found for a given tile

getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets the number of tiles

getNumTiles(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the total number of tiles in the image.

getNumTiles() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getNumTiles(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the total number of tiles in the image.

getNumTiles() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the number of tiles in the image

getNumTiles(Point) - Method in interface jj2000.j2k.image.ImgData

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in interface jj2000.j2k.image.ImgData

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.input.ImgReader

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.input.ImgReader

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.Tiler

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.Tiler

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the total number of tiles in the image.

getNumUniqueStrings() - Method in class loci.poi.hssf.record.SSTRecord

getNumValues() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num values field for the Series record.

getNumXTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the number of tiles along the tile grid in the horizontal direction.

getNumXTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getNumYTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the number of tiles along the tile grid in the vertical direction.

getNumYTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getObject(int) - Method in class loci.formats.cache.ByteArraySource

getObject(int[]) - Method in class loci.formats.cache.Cache

Gets the cached object at the given dimensional position.

getObject(int) - Method in class loci.formats.cache.CacheSource

getObject(int) - Method in interface loci.formats.cache.ICacheSource

Get the object corresponding to the given index.

getObject(int) - Method in class loci.formats.gui.BufferedImageSource

getObject(int) - Method in class loci.plugins.util.ImageProcessorSource

getObjectArrayMaxLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectArrayMinLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectClass(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectCount() - Method in class loci.formats.cache.CacheSource

getObjectCount() - Method in interface loci.formats.cache.ICacheSource

Get the total number of objects that this source can retrieve.

getObjectCount() - Method in class loci.formats.gui.BufferedImageSource

getObjectCount() - Method in class loci.plugins.util.ImageProcessorSource

getObjectDefaultValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectEnumerations(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectId() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the object id field for the CommonObjectData record.

getObjective(int) - Method in class ome.xml.model.Instrument

getObjective() - Method in class ome.xml.model.ObjectiveSettings

getObjectiveCalibratedMagnification(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveCalibratedMagnification(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveCalibratedMagnification(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveCalibratedMagnification(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveCorrection(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveCorrection(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveCorrection(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveCorrection(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveCount(int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveCount(int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveID(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveImmersion(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveImmersion(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveImmersion(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveImmersion(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveIris(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveIris(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveIris(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveIris(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveLens() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the objective lens string for this Frame.

getObjectiveLensNA() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the numerical aperture of the lens for this Frame.

getObjectiveLensNA(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveLensNA(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveLensNA(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveLensNA(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveManufacturer() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the objective manufacturer from the objective lens string.

getObjectiveManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveModel() - Method in class loci.formats.in.ND2Handler

getObjectiveModel(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveModel(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getObjectiveNominalMagnification(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveNominalMagnification(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveNominalMagnification(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveNominalMagnification(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveSettings() - Method in class ome.xml.model.Image

getObjectiveSettingsCorrectionCollar(int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveSettingsCorrectionCollar(int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveSettingsCorrectionCollar(int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveSettingsCorrectionCollar(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveSettingsID(int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveSettingsID(int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveSettingsID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveSettingsID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveSettingsMedium(int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveSettingsMedium(int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveSettingsMedium(int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveSettingsMedium(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveSettingsRefractiveIndex(int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveSettingsRefractiveIndex(int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveSettingsRefractiveIndex(int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveSettingsRefractiveIndex(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectiveWorkingDistance(int, int) - Method in class loci.formats.meta.AggregateMetadata

getObjectiveWorkingDistance(int, int) - Method in class loci.formats.meta.DummyMetadata

getObjectiveWorkingDistance(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getObjectiveWorkingDistance(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getObjectMaxValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectMinValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether object protection is enabled or disabled

getObjectType() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the object type field for the CommonObjectData record.

getObjectValueType(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjRecord() - Method in class loci.poi.hssf.model.AbstractShape

getObjRecord() - Method in class loci.poi.hssf.model.LineShape

getObjRecord() - Method in class loci.poi.hssf.model.PictureShape

getObjRecord() - Method in class loci.poi.hssf.model.PolygonShape

getObjRecord() - Method in class loci.poi.hssf.model.SimpleFilledShape

getObjRecord() - Method in class loci.poi.hssf.model.TextboxShape

getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Gives the offset of the end of last packet containing ROI information

getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Gives the offset of the end of last packet containing ROI information

getOffset(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the cth offset for this Frame.

getOffset() - Method in class loci.poi.ddf.EscherBSERecord

File offset in the delay stream.

getOffset() - Method in class loci.poi.hpsf.Section

Returns the offset of the section in the stream.

getOffset() - Method in class loci.poi.poifs.storage.RawDataBlock

getOffset() - Method in class ome.xml.model.Detector

getOffset() - Method in class ome.xml.model.DetectorSettings

getOMEMetadata(MetadataRetrieve) - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.getOMEMetadata(MetadataRetrieve) instead.

getOMEMetadata(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Returns a OMEXMLMetadata object with the same contents as the given MetadataRetrieve, converting it if necessary.

getOMEMetadata(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl

getOMEMetadata() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getOMEXML(MetadataRetrieve) - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.getOMEXML(MetadataRetrieve) instead.

getOMEXML(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Extracts an OME-XML metadata string from the given metadata object, by converting to an OME-XML metadata object if necessary.

getOMEXML(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl

getOmeXmlMetadata() - Method in class loci.formats.in.FakeReader

getOmeXmlService() - Method in class loci.formats.in.FakeReader

getOMEXMLVersion(Object) - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.getOMEXMLVersion(Object) instead.

getOMEXMLVersion(Object) - Method in interface loci.formats.services.OMEXMLService

Gets the schema version for the given OME-XML metadata or root object (e.g., "2007-06" or "2003-FC").

getOMEXMLVersion(Object) - Method in class loci.formats.services.OMEXMLServiceImpl

getOnDemandStripOffsets() - Method in class loci.formats.tiff.IFD

getOpenAllSeriesInfo() - Method in class loci.plugins.in.ImporterOptions

getOperator() - Method in class mdbtools.dbengine.sql.Condition

getOperator() - Method in class mdbtools.dbengine.sql.Equation

getOpticalZoom() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the optical zoom associatetd with this Frame.

getOptimalTileHeight() - Method in class loci.formats.DelegateReader

getOptimalTileHeight() - Method in class loci.formats.FormatReader

getOptimalTileHeight() - Method in interface loci.formats.IFormatReader

Returns the optimal sub-image height for use with openBytes.

getOptimalTileHeight() - Method in class loci.formats.ImageReader

getOptimalTileHeight() - Method in class loci.formats.in.AFIReader

getOptimalTileHeight() - Method in class loci.formats.in.AmiraReader

getOptimalTileHeight() - Method in class loci.formats.in.APLReader

getOptimalTileHeight() - Method in class loci.formats.in.BaseZeissReader

getOptimalTileHeight() - Method in class loci.formats.in.BDReader

getOptimalTileHeight() - Method in class loci.formats.in.BioRadReader

getOptimalTileHeight() - Method in class loci.formats.in.CellSensReader

getOptimalTileHeight() - Method in class loci.formats.in.EPSReader

getOptimalTileHeight() - Method in class loci.formats.in.FlexReader

getOptimalTileHeight() - Method in class loci.formats.in.FV1000Reader

getOptimalTileHeight() - Method in class loci.formats.in.HamamatsuVMSReader

getOptimalTileHeight() - Method in class loci.formats.in.ImageIOReader

getOptimalTileHeight() - Method in class loci.formats.in.ImarisHDFReader

getOptimalTileHeight() - Method in class loci.formats.in.InCellReader

getOptimalTileHeight() - Method in class loci.formats.in.IPWReader

getOptimalTileHeight() - Method in class loci.formats.in.L2DReader

getOptimalTileHeight() - Method in class loci.formats.in.LeicaReader

getOptimalTileHeight() - Method in class loci.formats.in.LeicaSCNReader

getOptimalTileHeight() - Method in class loci.formats.in.LIFReader

getOptimalTileHeight() - Method in class loci.formats.in.MIASReader

getOptimalTileHeight() - Method in class loci.formats.in.MicromanagerReader

getOptimalTileHeight() - Method in class loci.formats.in.MinimalTiffReader

getOptimalTileHeight() - Method in class loci.formats.in.ND2Reader

getOptimalTileHeight() - Method in class loci.formats.in.NDPIReader

getOptimalTileHeight() - Method in class loci.formats.in.NDPISReader

getOptimalTileHeight() - Method in class loci.formats.in.NRRDReader

getOptimalTileHeight() - Method in class loci.formats.in.OMETiffReader

getOptimalTileHeight() - Method in class loci.formats.in.OpenlabReader

getOptimalTileHeight() - Method in class loci.formats.in.PCIReader

getOptimalTileHeight() - Method in class loci.formats.in.PerkinElmerReader

getOptimalTileHeight() - Method in class loci.formats.in.PrairieReader

getOptimalTileHeight() - Method in class loci.formats.in.PyramidTiffReader

getOptimalTileHeight() - Method in class loci.formats.in.ScanrReader

getOptimalTileHeight() - Method in class loci.formats.in.SVSReader

getOptimalTileHeight() - Method in class loci.formats.in.TrestleReader

getOptimalTileHeight() - Method in class loci.formats.in.VisitechReader

getOptimalTileHeight() - Method in class loci.formats.in.ZeissLSMReader

getOptimalTileHeight() - Method in class loci.formats.ReaderWrapper

getOptimalTileWidth() - Method in class loci.formats.DelegateReader

getOptimalTileWidth() - Method in class loci.formats.FormatReader

getOptimalTileWidth() - Method in interface loci.formats.IFormatReader

Returns the optimal sub-image width for use with openBytes.

getOptimalTileWidth() - Method in class loci.formats.ImageReader

getOptimalTileWidth() - Method in class loci.formats.in.AFIReader

getOptimalTileWidth() - Method in class loci.formats.in.APLReader

getOptimalTileWidth() - Method in class loci.formats.in.BDReader

getOptimalTileWidth() - Method in class loci.formats.in.CellSensReader

getOptimalTileWidth() - Method in class loci.formats.in.EPSReader

getOptimalTileWidth() - Method in class loci.formats.in.FlexReader

getOptimalTileWidth() - Method in class loci.formats.in.FV1000Reader

getOptimalTileWidth() - Method in class loci.formats.in.HamamatsuVMSReader

getOptimalTileWidth() - Method in class loci.formats.in.ImarisHDFReader

getOptimalTileWidth() - Method in class loci.formats.in.InCellReader

getOptimalTileWidth() - Method in class loci.formats.in.IPWReader

getOptimalTileWidth() - Method in class loci.formats.in.L2DReader

getOptimalTileWidth() - Method in class loci.formats.in.LeicaReader

getOptimalTileWidth() - Method in class loci.formats.in.LeicaSCNReader

getOptimalTileWidth() - Method in class loci.formats.in.MIASReader

getOptimalTileWidth() - Method in class loci.formats.in.MicromanagerReader

getOptimalTileWidth() - Method in class loci.formats.in.MinimalTiffReader

getOptimalTileWidth() - Method in class loci.formats.in.NDPIReader

getOptimalTileWidth() - Method in class loci.formats.in.NDPISReader

getOptimalTileWidth() - Method in class loci.formats.in.OMETiffReader

getOptimalTileWidth() - Method in class loci.formats.in.PCIReader

getOptimalTileWidth() - Method in class loci.formats.in.PerkinElmerReader

getOptimalTileWidth() - Method in class loci.formats.in.PrairieReader

getOptimalTileWidth() - Method in class loci.formats.in.PyramidTiffReader

getOptimalTileWidth() - Method in class loci.formats.in.ScanrReader

getOptimalTileWidth() - Method in class loci.formats.in.SVSReader

getOptimalTileWidth() - Method in class loci.formats.in.TrestleReader

getOptimalTileWidth() - Method in class loci.formats.ReaderWrapper

getOptimalWidth() - Method in class loci.formats.in.ZeissLSMReader

getOptimize() - Method in class loci.poi.hssf.record.RowRecord

get whether to optimize or not (set to 0)

getOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the option with the given key.

getOption() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the option field for the CommonObjectData record.

getOptionFlag() - Method in class loci.poi.hssf.record.NameRecord

gets the option flag

getOptionFlags() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the option flags (unimportant for HSSF supported sheets)

getOptionFlags() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

get the (currently unimportant to HSSF) option flags

getOptionFlags() - Method in class loci.poi.hssf.record.RowRecord

gets the option bitmask.

getOptionFlags() - Method in class loci.poi.hssf.record.UnicodeString

get the option flags which among other things return if this is a 16-bit or 8 bit string

getOptions() - Method in class loci.plugins.in.ImportProcess

getOptions() - Method in class loci.poi.ddf.EscherOptRecord

Automatically recalculate the correct option

getOptions() - Method in class loci.poi.ddf.EscherRecord

getOptions() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the options field for the AxisOptions record.

getOptions() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the options field for the CategorySeriesAxis record.

getOptions() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the options bitfield - use the bitsetters instead

getOptions() - Method in class loci.poi.hssf.record.DatRecord

Get the options field for the Dat record.

getOptions() - Method in class loci.poi.hssf.record.formula.AttrPtg

getOptions() - Method in class loci.poi.hssf.record.FormulaRecord

get the option flags

getOptions() - Method in class loci.poi.hssf.record.FrameRecord

Get the options field for the Frame record.

getOptions() - Method in class loci.poi.hssf.record.LegendRecord

Get the options field for the Legend record.

getOptions() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the options field for the LinkedData record.

getOptions() - Method in class loci.poi.hssf.record.PrintSetupRecord

getOptions() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the options field for the TextObjectBase record.

getOptions() - Method in class loci.poi.hssf.record.TickRecord

Get the options field for the Tick record.

getOptions() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the options field for the ValueRange record.

getOptions() - Method in class loci.poi.hssf.record.WindowOneRecord

get the options bitmask (see bit setters)

getOptions() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the options bitmask or just use the bit setters.

getOptions() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the bit flags for the options.

getOptions1() - Method in class loci.poi.hssf.record.TextRecord

Get the options1 field for the Text record.

getOptions2() - Method in class loci.poi.hssf.record.TextRecord

Get the options2 field for the Text record.

getOrder() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper

getOrder() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper

getOrder() - Method in class loci.common.ByteArrayHandle

getOrder() - Method in class loci.common.FileHandle

getOrder() - Method in interface loci.common.IRandomAccess

Returns the current order of the stream.

getOrder() - Method in class loci.common.NIOFileHandle

getOrder() - Method in class loci.common.StreamHandle

getOrder() - Method in class loci.formats.cache.CacheStrategy

getOrder() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the order in which objects should be loaded along each axis.

getOrder() - Method in class ome.scifio.io.ByteArrayHandle

getOrder() - Method in class ome.scifio.io.FileHandle

getOrder() - Method in interface ome.scifio.io.IRandomAccess

Returns the current order of the stream.

getOrder() - Method in class ome.scifio.io.NIOFileHandle

getOrder() - Method in class ome.scifio.io.StreamHandle

getOrderBy(int) - Method in class mdbtools.dbengine.sql.Select

getOrderByCount() - Method in class mdbtools.dbengine.sql.Select

getOrgX() - Method in interface loci.formats.services.WlzService

Gets column origin.

getOrgX() - Method in class loci.formats.services.WlzServiceImpl

getOrgY() - Method in interface loci.formats.services.WlzService

Gets line origin.

getOrgY() - Method in class loci.formats.services.WlzServiceImpl

getOrgZ() - Method in interface loci.formats.services.WlzService

Gets plane origin.

getOrgZ() - Method in class loci.formats.services.WlzServiceImpl

getOrigBitDepth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getOriginalBitDepth(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the original bitdepth of the specified component.

getOriginalIndex(int) - Method in class loci.formats.ChannelMerger

Returns the image number in the original dataset that corresponds to the given image number.

getOriginalIndex(int) - Method in class loci.formats.ChannelSeparator

Returns the image number in the original dataset that corresponds to the given image number.

getOriginalMetadata(OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService

Parse any OriginalMetadata annotations from the given OME-XML metadata object and store them in a Hashtable.

getOriginalMetadata(OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl

getOriginalMetadata() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.METADATA.

getOriginalOrder() - Method in class loci.formats.AxisGuesser

Gets the original dimension order.

getOSVersion() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "OS version" field.

getOSVersion() - Method in class loci.poi.hpsf.SpecialPropertySet

getOutlineLevel() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the outline level for the cells

getOutlineLevel() - Method in class loci.poi.hssf.record.RowRecord

get the outline level of this row

getOutlineStyleLevel() - Method in class loci.poi.hssf.record.StyleRecord

get the row or column level of the style (if builtin 1||2)

getPackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

For the case of binary data (isBinary() returns true), return the binary data as a packed byte array.

getPackedPktHead(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the packed packet headers for a given tile.

getPacketPerTilePart() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packetPerTilePart

getPackPacketHeaderInMain() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packPacketHeaderInMain

getPackPacketHeaderInTile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packPacketHeaderInTile

getPageBreakZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord

zoom magification in page break view

getPageCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the page count or 0 if the SummaryInformation does not contain a page count.

getPaged() - Method in class loci.poi.hssf.record.WindowTwoRecord

is the sheet currently displayed in the window

getPageStart() - Method in class loci.poi.hssf.record.PrintSetupRecord

getPageStart() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the page start.

getPaint() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getPaint() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette options bitmask (see the individual bit getter methods that reference this one)

getPalettepos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getPane() - Method in class loci.poi.hssf.record.SelectionRecord

get which window pane this is for

getPaneInformation() - Method in class loci.poi.hssf.model.Sheet

Returns the information regarding the currently configured pane (split or freeze).

getPaneInformation() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the information regarding the currently configured pane (split or freeze).

getPaperSize() - Method in class loci.poi.hssf.record.PrintSetupRecord

getPaperSize() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the paper size.

getParameterClass(int) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the parameters that are used in this class.

getParameterInfo() - Static method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.roi.ROIDeScaler

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT

Returns the parameters that are used in this class and implementing classes.

getParCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the par count or 0 if the DocumentSummaryInformation does not contain a par count.

getParent(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

getParent(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

getParent() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the parent of this subband.

getParent() - Method in class jj2000.j2k.wavelet.Subband

Returns the parent of this subband.

getParent() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the parent of this subband.

getParent() - Method in class loci.common.Location

Returns the name of this file's parent directory, i.e.

getParent() - Method in class loci.poi.hssf.usermodel.HSSFShape

Gets the parent shape.

getParent() - Method in interface loci.poi.poifs.filesystem.Entry

get this Entry's parent (the DirectoryEntry that owns this Entry).

getParent() - Method in class loci.poi.poifs.filesystem.EntryNode

get this Entry's parent (the DocumentEntry that owns this Entry).

getParent() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

Returns the path's parent or null if this path is the root path.

getParent() - Method in class ome.scifio.io.Location

Returns the name of this file's parent directory, i.e.

getParentFile() - Method in class loci.common.Location

getParentFile() - Method in class ome.scifio.io.Location

getParentIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

for cell XF types this is the parent style (usually 0/normal).

getParentTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the parent TIFFTag of this directory if one has been defined or null otherwise.

getParsedExpression() - Method in class loci.poi.hssf.record.FormulaRecord

get the stack as a list

getParsingEnabled() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Gets parsingEnabled

getPassword() - Method in class loci.poi.hssf.model.Sheet

Returns the PasswordRecord.

getPassword() - Method in class loci.poi.hssf.record.FileSharingRecord

getPassword() - Method in class loci.poi.hssf.record.PasswordRecord

get the password

getPassword() - Method in class loci.poi.hssf.record.PasswordRev4Record

get the password

getPassword() - Method in class loci.poi.hssf.usermodel.HSSFSheet

getPath() - Method in class loci.common.Location

getPath() - Method in class loci.plugins.util.BFVirtualStack

getPath() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

getPath() - Method in class loci.poi.poifs.filesystem.DirectoryNode

getPath() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getPath() - Method in class ome.scifio.io.Location

getPatriarch() - Method in class loci.poi.hssf.record.EscherAggregate

getPattern() - Method in class loci.formats.FilePattern

Gets the file pattern string.

getPattern() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the pattern field for the AreaFormat record.

getPhotometricInterpretation() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the current value that will be written to the Photometricinterpretation tag.

getPhotometricInterpretation() - Method in class loci.formats.tiff.IFD

Retrieves the image's photometric interpretation (TIFF tag PhotometricInterpretation) from this IFD.

getPhysicalNumberOfCells() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getPhysicalNumberOfCells() - Method in class loci.poi.hssf.usermodel.HSSFRow

gets the number of defined cells (NOT number of cells in the actual row!).

getPhysicalNumberOfRows() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getPhysicalNumberOfRows() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the number of phsyically defined rows (NOT the number of rows in the sheet)

getPhysicalSizeX(Double) - Static method in class loci.formats.FormatTools

getPhysicalSizeX() - Method in class loci.tests.testng.Configuration

getPhysicalSizeX() - Method in class ome.xml.model.Pixels

getPhysicalSizeY(Double) - Static method in class loci.formats.FormatTools

getPhysicalSizeY() - Method in class loci.tests.testng.Configuration

getPhysicalSizeY() - Method in class ome.xml.model.Pixels

getPhysicalSizeZ(Double) - Static method in class loci.formats.FormatTools

getPhysicalSizeZ() - Method in class loci.tests.testng.Configuration

getPhysicalSizeZ() - Method in class ome.xml.model.Pixels

getPictDimensions(byte[]) - Method in class loci.formats.gui.LegacyQTTools

Gets width and height for the given PICT bytes.

getPicturedata() - Method in class loci.poi.ddf.EscherBlipRecord

getPictureIndex() - Method in class loci.poi.hssf.usermodel.HSSFPicture

getPIDString(long) - Method in class loci.poi.hpsf.Section

Returns the PID string associated with a property ID.

getPIDString(byte[], long) - Static method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the property ID string that is associated with a given property ID in a section format ID's namespace.

getPinholeSize() - Method in class loci.formats.in.ND2Handler

getPinholeSize() - Method in class ome.xml.model.Channel

getPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

getPixel(int, int, int[]) - Method in class loci.plugins.util.RecordedImageProcessor

getPixelBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(WritableRaster, boolean) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(WritableRaster, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelCount() - Method in class loci.plugins.util.RecordedImageProcessor

getPixelInterpolated(double, double) - Method in class loci.plugins.util.RecordedImageProcessor

getPixels(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Gets the image's pixel data as arrays of primitives, one per channel.

getPixels(BufferedImage, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets the image's pixel data as arrays of primitives, one per channel.

getPixels(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Gets the raster's pixel data as arrays of primitives, one per channel.

getPixels(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets the raster's pixel data as arrays of primitives, one per channel.

getPixels() - Method in class loci.plugins.util.RecordedImageProcessor

getPixels() - Method in class ome.xml.model.BinData

getPixels() - Method in class ome.xml.model.Channel

getPixels() - Method in class ome.xml.model.Image

getPixels() - Method in class ome.xml.model.Plane

getPixels() - Method in class ome.xml.model.TiffData

getPixelsAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getPixelsAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsBigEndian(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsBigEndian(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsBigEndian(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsBigEndian(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsBinDataBigEndian(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsBinDataBigEndian(int, int) - Method in class loci.formats.meta.DummyMetadata

getPixelsBinDataBigEndian(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsBinDataBigEndian(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsBinDataCount(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsBinDataCount(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsBinDataCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsBinDataCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsCopy() - Method in class loci.plugins.util.RecordedImageProcessor

getPixelsDimensionOrder(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsDimensionOrder(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsDimensionOrder(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsDimensionOrder(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsID(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsID(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsInterleaved(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsInterleaved(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsInterleaved(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsInterleaved(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelSizeX() - Method in class loci.formats.in.MetamorphHandler

getPixelSizeX() - Method in class loci.formats.in.ND2Handler

getPixelSizeY() - Method in class loci.formats.in.MetamorphHandler

getPixelSizeY() - Method in class loci.formats.in.ND2Handler

getPixelSizeZ() - Method in class loci.formats.in.ND2Handler

getPixelsPerLine() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the pixels per line for this Frame.

getPixelsPhysicalSizeX(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsPhysicalSizeX(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsPhysicalSizeX(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsPhysicalSizeX(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsPhysicalSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsPhysicalSizeY(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsPhysicalSizeY(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsPhysicalSizeY(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsPhysicalSizeY(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsPhysicalSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsPhysicalSizeZ(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsPhysicalSizeZ(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsPhysicalSizeZ(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsPhysicalSizeZ(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsPhysicalSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsSHA1(int) - Method in class loci.formats.ome.OmeisImporter

Deprecated.

Gets SHA1 hash for the pixels corresponding to the given pixels ID.

getPixelsSignificantBits(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsSignificantBits(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsSignificantBits(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsSignificantBits(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsSizeC(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsSizeC(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsSizeC(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeC(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsSizeT(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsSizeT(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsSizeT(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeT(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsSizeX(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsSizeX(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsSizeX(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeX(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsSizeY(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsSizeY(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsSizeY(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeY(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsSizeZ(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsSizeZ(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsSizeZ(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeZ(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsTimeIncrement(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsTimeIncrement(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsTimeIncrement(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsTimeIncrement(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelsTimeIncrement(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsType(int) - Method in class loci.formats.meta.AggregateMetadata

getPixelsType(int) - Method in class loci.formats.meta.DummyMetadata

getPixelsType(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPixelsType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPixelType() - Method in class loci.formats.FileStitcher

getPixelType() - Method in class loci.formats.FormatReader

getPixelType(String) - Method in class loci.formats.FormatReader

Retrieves an PixelType enumeration value for the given String.

getPixelType(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Gets the pixel type of the given image.

getPixelType() - Method in interface loci.formats.IFormatReader

Gets the pixel type.

getPixelType() - Method in class loci.formats.ImageReader

getPixelType() - Method in class loci.formats.ReaderWrapper

getPixelType() - Method in interface loci.formats.services.WlzService

Gets the image pixel type.

getPixelType() - Method in class loci.formats.services.WlzServiceImpl

getPixelType() - Method in class loci.formats.tiff.IFD

Retrieves the image's pixel type based on the BitsPerSample tag.

getPixelType(String[]) - Method in class loci.plugins.macro.LociFunctions

getPixelType() - Method in class loci.tests.testng.Configuration

getPixelTypes() - Method in class loci.formats.FormatWriter

getPixelTypes(String) - Method in class loci.formats.FormatWriter

getPixelTypes() - Method in interface loci.formats.IFormatWriter

Gets the supported pixel types.

getPixelTypes(String) - Method in interface loci.formats.IFormatWriter

Gets the supported pixel types for the given codec.

getPixelTypes() - Method in class loci.formats.ImageWriter

getPixelTypes(String) - Method in class loci.formats.ImageWriter

getPixelTypes(String) - Method in class loci.formats.out.APNGWriter

getPixelTypes(String) - Method in class loci.formats.out.AVIWriter

getPixelTypes(String) - Method in class loci.formats.out.EPSWriter

getPixelTypes(String) - Method in class loci.formats.out.ICSWriter

getPixelTypes(String) - Method in class loci.formats.out.ImageIOWriter

getPixelTypes(String) - Method in class loci.formats.out.JavaWriter

getPixelTypes(String) - Method in class loci.formats.out.JPEG2000Writer

Overridden to return the formats supported by the writer.

getPixelTypes(String) - Method in class loci.formats.out.JPEGWriter

getPixelTypes(String) - Method in class loci.formats.out.OMEXMLWriter

getPixelTypes(String) - Method in class loci.formats.out.QTWriter

getPixelTypes(String) - Method in class loci.formats.out.TiffWriter

getPixelTypes(String) - Method in class loci.formats.out.WlzWriter

getPixelTypes() - Method in class loci.formats.WriterWrapper

getPixelTypes(String) - Method in class loci.formats.WriterWrapper

getPixelTypeString(int) - Static method in class loci.formats.FormatTools

Takes a pixel type value and gets a corresponding string representation.

getPixelValue(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

getPlanarConfiguration() - Method in class loci.formats.tiff.IFD

Retrieves the image's planar configuration (TIFF tag PlanarConfiguration) from this IFD.

getPlane(int) - Method in class ome.xml.model.Pixels

getPlaneAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlaneAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getPlaneAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlaneAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlaneAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlaneAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlaneAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlaneAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlaneByteOffset(int, int, int) - Method in class loci.formats.in.DeltavisionReader

Given any specific Z, W, and T of a plane, determine the absolute byte offset of the plane in the file.

getPlaneCount() - Method in class loci.formats.FormatWriter

Retrieve the total number of planes in the current series.

getPlaneCount(int) - Method in class loci.formats.meta.AggregateMetadata

getPlaneCount(int) - Method in class loci.formats.meta.DummyMetadata

getPlaneCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlaneCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlaneCount() - Method in class loci.formats.out.TiffWriter

getPlaneCount() - Method in class ome.xml.model.TiffData

getPlaneDeltaT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlaneDeltaT(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlaneDeltaT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlaneDeltaT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlaneExposureTime(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlaneExposureTime(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlaneExposureTime(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlaneExposureTime(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlaneHashSHA1(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlaneHashSHA1(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlaneHashSHA1(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlaneHashSHA1(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlaneMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the maximum pixel value for the specified plane.

getPlaneMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the minimum pixel value for the specified plane.

getPlanePositionX(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlanePositionX(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlanePositionX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlanePositionX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlanePositionX(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlanePositionY(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlanePositionY(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlanePositionY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlanePositionY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlanePositionY(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlanePositionZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlanePositionZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlanePositionZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlanePositionZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlanePositionZ(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlaneSize(IFormatReader) - Static method in class loci.formats.FormatTools

Returns the size in bytes of a single plane.

getPlaneSize(IFormatReader, int, int) - Static method in class loci.formats.FormatTools

Returns the size in bytes of a w * h tile.

getPlaneTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlaneTheC(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlaneTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlaneTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlaneTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlaneTheT(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlaneTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlaneTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlaneTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlaneTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlaneTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlaneTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlaneTimingDeltaT(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlaneTimingExposureTime(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlate(int) - Method in class ome.xml.model.OME

getPlate() - Method in class ome.xml.model.PlateAcquisition

getPlate() - Method in class ome.xml.model.Well

getPlateAcquisition(int) - Method in class ome.xml.model.Plate

getPlateAcquisitionAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAcquisitionAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAcquisitionCount(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionCount(int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAcquisitionDescription(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionDescription(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionDescription(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionDescription(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAcquisitionEndTime(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionEndTime(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionEndTime(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionEndTime(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAcquisitionID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionID(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAcquisitionMaximumFieldCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionMaximumFieldCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionMaximumFieldCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionMaximumFieldCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAcquisitionName(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionName(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionName(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionName(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAcquisitionStartTime(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionStartTime(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionStartTime(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionStartTime(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAcquisitionWellSampleRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAcquisitionWellSampleRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAcquisitionWellSampleRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAcquisitionWellSampleRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getPlateAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getPlateAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateColumnNamingConvention(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateColumnNamingConvention(int) - Method in class loci.formats.meta.DummyMetadata

getPlateColumnNamingConvention(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateColumnNamingConvention(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateColumns(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateColumns(int) - Method in class loci.formats.meta.DummyMetadata

getPlateColumns(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateColumns(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateCount() - Method in class loci.formats.meta.AggregateMetadata

getPlateCount() - Method in class loci.formats.meta.DummyMetadata

getPlateCount() - Method in interface loci.formats.meta.MetadataRetrieve

getPlateCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateDescription(int) - Method in class loci.formats.meta.DummyMetadata

getPlateDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateExternalIdentifier(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateExternalIdentifier(int) - Method in class loci.formats.meta.DummyMetadata

getPlateExternalIdentifier(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateExternalIdentifier(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateFieldIndex(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateFieldIndex(int) - Method in class loci.formats.meta.DummyMetadata

getPlateFieldIndex(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateFieldIndex(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateID(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateID(int) - Method in class loci.formats.meta.DummyMetadata

getPlateID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateName(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateName(int) - Method in class loci.formats.meta.DummyMetadata

getPlateName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getPlateRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateRowNamingConvention(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateRowNamingConvention(int) - Method in class loci.formats.meta.DummyMetadata

getPlateRowNamingConvention(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateRowNamingConvention(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateRows(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateRows(int) - Method in class loci.formats.meta.DummyMetadata

getPlateRows(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateRows(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateStatus(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateStatus(int) - Method in class loci.formats.meta.DummyMetadata

getPlateStatus(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateStatus(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateWellOriginX(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateWellOriginX(int) - Method in class loci.formats.meta.DummyMetadata

getPlateWellOriginX(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateWellOriginX(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPlateWellOriginY(int) - Method in class loci.formats.meta.AggregateMetadata

getPlateWellOriginY(int) - Method in class loci.formats.meta.DummyMetadata

getPlateWellOriginY(int) - Method in interface loci.formats.meta.MetadataRetrieve

getPlateWellOriginY(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPockelCell() - Method in class ome.xml.model.Laser

getPockelCellSetting() - Method in class ome.xml.model.Channel

getPointFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointID(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointLocked(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointNumber() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the point number field for the DataFormat record.

getPoints() - Method in class ome.xml.model.Polygon

getPoints() - Method in class ome.xml.model.Polyline

getPointStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointText(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointText(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointTheC(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointTheT(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointTransform(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointVisible(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointX(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointX(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPointY(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPointY(int, int) - Method in class loci.formats.meta.DummyMetadata

getPointY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPointY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonID(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonLocked(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonPoints(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonPoints(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonPoints(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonPoints(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonText(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonText(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonTheC(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonTheT(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonTransform(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolygonVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolygonVisible(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolygonVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolygonVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineID(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineLocked(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineMarkerEnd(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineMarkerEnd(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineMarkerEnd(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineMarkerEnd(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineMarkerStart(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineMarkerStart(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineMarkerStart(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineMarkerStart(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylinePoints(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylinePoints(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylinePoints(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylinePoints(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineText(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineText(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineTheC(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineTheT(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineTransform(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPolylineVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata

getPolylineVisible(int, int) - Method in class loci.formats.meta.DummyMetadata

getPolylineVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getPolylineVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getPos() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Returns the stream position clamped to a maximum of Integer.MAX_VALUE.

getPos() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the current offset in the file

getPos() - Method in interface jj2000.j2k.io.RandomAccessIO

Returns the current position in the stream, which is the position from where the next byte of data would be read.

getPos() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the current position in the stream, which is the position from where the next byte of data would be read.

getPos() - Method in class loci.poi.hssf.record.RecordInputStream

getPositionNames() - Method in class loci.formats.in.ND2Handler

getPositionOfBof() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the offset in bytes of the Beginning of File Marker within the HSSF Stream part of the POIFS file

getPositionX() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the X stage position associated with this Frame.

getPositionX() - Method in class ome.xml.model.Plane

getPositionX() - Method in class ome.xml.model.WellSample

getPositionY() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the Y stage position associated with this Frame.

getPositionY() - Method in class ome.xml.model.Plane

getPositionY() - Method in class ome.xml.model.WellSample

getPositionZ() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the Z stage position associated with this Frame.

getPositionZ() - Method in class ome.xml.model.Plane

getPossible(String) - Method in class loci.plugins.prefs.OptionsList

Gets the possible values for the string option with the given key.

getPossible() - Method in class loci.plugins.prefs.StringOption

Gets the list of possible values.

getPossibleDomains(String) - Method in class loci.formats.FormatReader

getPossibleDomains(String) - Method in interface loci.formats.IFormatReader

Returns a list of scientific domains in which this format is used.

getPossibleDomains(String) - Method in class loci.formats.ImageReader

getPossibleDomains(String) - Method in class loci.formats.ReaderWrapper

getPossiblePositions() - Method in class loci.formats.cache.CacheStrategy

Gets positions to consider for possible inclusion in the cache, assuming a current position at the origin (0).

getPossiblePositions() - Method in class loci.formats.cache.CrosshairStrategy

getPossiblePositions() - Method in class loci.formats.cache.RectangleStrategy

getPower() - Method in class ome.xml.model.LightSource

getPowers() - Method in class loci.formats.in.ND2Handler

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the precinct partition width for the specified tile-component and (tile-component) resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the precinct partition width for the specified tile-component and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Returns the precinct partition width for the specified component, resolution level and tile.

getPPX(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the width of a packet for the specified tile- component and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the precinct partition width for the specified component, tile and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec

Returns the precinct partition width in component 'n' and tile 't' at resolution level 'rl'.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the precinct partition height for the specified tile-component and (tile-component) resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the precinct partition height for the specified component, tile and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Returns the precinct partition height for the specified component, resolution level and tile.

getPPY(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the height of a packet for the specified tile- component and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the precinct partition height for the specified component, tile and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec

Returns the precinct partition height in component 'n' and tile 't' at resolution level 'rl'.

getPrecedence() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns Precedence.

getPrecinctPartition() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets precinctPartition

getPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Get PrecInfo instance of the specified resolution level, component and precinct.

getPrecInfo(int, int, int, int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns information about a given precinct

getPreferredEncoding() - Static method in class loci.poi.util.StringUtil

getPreferredSize() - Method in class loci.formats.gui.CacheIndicator

getPreferredSize() - Method in class loci.formats.gui.PreviewPane

getPreferredSize() - Method in class loci.poi.hssf.usermodel.HSSFPicture

Calculate the preferred size for this picture.

getPreferredSize() - Method in class loci.tests.ImageTester

getPrefix() - Method in class loci.formats.FilePattern

Gets the pattern's text string before any numerical ranges.

getPrefix(int) - Method in class loci.formats.FilePattern

Gets the pattern's text string before the given numerical block.

getPrefix(String) - Method in class loci.formats.in.ZeissTIFFReader

getPrefixes() - Method in class loci.formats.FilePattern

Gets the pattern's text string before each numerical block.

getPreOffset() - Method in class loci.poi.hssf.model.Sheet

get the preoffset when using DBCELL records (currently unused) - this is the position of this sheet within the whole file.

getPresentationFormat() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the presentation format (or null).

getPreviousChild() - Method in interface loci.poi.poifs.property.Child

Get the previous Child, if any

getPreviousChild() - Method in class loci.poi.poifs.property.Property

Get the previous Child, if any

getPreviousSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getPrintArea(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Retrieves the reference for the printarea of the specified sheet, the sheet name is appended to the reference even if it was not specified.

getPrintGridlines() - Method in class loci.poi.hssf.model.Sheet

Returns the PrintGridlinesRecord.

getPrintGridlines() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

get whether or not to print the gridlines (and make your spreadsheet ugly)

getPrintHeaders() - Method in class loci.poi.hssf.record.PrintHeadersRecord

get whether to print the headers - y/n

getPrintSetup() - Method in class loci.poi.hssf.model.Sheet

Returns the PrintSetupRecord.

getPrintSetup() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the print setup object.

getPriorities() - Method in class loci.formats.cache.CacheStrategy

getPriorities() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the priority for caching each axis.

getProcessor(int) - Method in class loci.plugins.util.BFVirtualStack

getProgressionName() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets progressionType

getProgressionType() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets progressionType.

getProgressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets progressionType

getProgressMaximum() - Method in class loci.common.StatusEvent

Gets progress maximum.

getProgressMaximum() - Method in class ome.scifio.common.StatusEvent

Gets progress maximum.

getProgressValue() - Method in class loci.common.StatusEvent

Gets progress value.

getProgressValue() - Method in class ome.scifio.common.StatusEvent

Gets progress value.

getProgressWatch() - Static method in class jj2000.j2k.util.FacilityManager

Returns the ProgressWatch instance registered with the current thread (the thread that calls this method).

getProject(int) - Method in class ome.xml.model.OME

getProjectAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getProjectAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getProjectAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getProjectAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getProjectAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getProjectAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getProjectAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getProjectAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getProjectCount() - Method in class loci.formats.meta.AggregateMetadata

getProjectCount() - Method in class loci.formats.meta.DummyMetadata

getProjectCount() - Method in interface loci.formats.meta.MetadataRetrieve

getProjectCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getProjectDatasetRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getProjectDatasetRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getProjectDatasetRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getProjectDatasetRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getProjectDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getProjectDescription(int) - Method in class loci.formats.meta.DummyMetadata

getProjectDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getProjectDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getProjectExperimenterGroupRef(int) - Method in class loci.formats.meta.AggregateMetadata

getProjectExperimenterGroupRef(int) - Method in class loci.formats.meta.DummyMetadata

getProjectExperimenterGroupRef(int) - Method in interface loci.formats.meta.MetadataRetrieve

getProjectExperimenterGroupRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getProjectExperimenterRef(int) - Method in class loci.formats.meta.AggregateMetadata

getProjectExperimenterRef(int) - Method in class loci.formats.meta.DummyMetadata

getProjectExperimenterRef(int) - Method in interface loci.formats.meta.MetadataRetrieve

getProjectExperimenterRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getProjectID(int) - Method in class loci.formats.meta.AggregateMetadata

getProjectID(int) - Method in class loci.formats.meta.DummyMetadata

getProjectID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getProjectID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getProjectName(int) - Method in class loci.formats.meta.AggregateMetadata

getProjectName(int) - Method in class loci.formats.meta.DummyMetadata

getProjectName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getProjectName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getProperties() - Method in class loci.poi.hpsf.MutableSection

Gets this section's properties.

getProperties() - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the Property array contained in this property set.

getProperties() - Method in class loci.poi.hpsf.Section

Returns this section's properties.

getProperties() - Method in class loci.poi.hpsf.SpecialPropertySet

getProperty(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Gets a property from the property set of this image.

getProperty(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getProperty(long) - Method in class loci.poi.hpsf.MutableSection

Gets a property.

getProperty(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of the property with the specified ID.

getProperty(long) - Method in class loci.poi.hpsf.Section

Returns the value of the property with the specified ID.

getProperty(int) - Method in class loci.poi.hpsf.SpecialPropertySet

getProperty() - Method in class loci.poi.poifs.filesystem.EntryNode

grant access to the property

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of a boolean property with the specified ID.

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.Section

Returns the value of the boolean property with the specified ID.

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet

getPropertyCount() - Method in class loci.poi.hpsf.MutableSection

Overwrites the super class' method to cope with a redundancy: the property count is maintained in a separate member variable, but shouldn't.

getPropertyCount() - Method in class loci.poi.hpsf.Section

Returns the number of properties in this section.

getPropertyIntValue(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of the numeric property with the specified ID.

getPropertyIntValue(long) - Method in class loci.poi.hpsf.Section

Returns the value of the numeric property with the specified ID.

getPropertyIntValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet

getPropertyName(short) - Static method in class loci.poi.ddf.EscherProperties

getPropertyNames() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns a list of the properties recognized by this image.

getPropertyNames(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns an array of Strings recognized as names by this property source that begin with the supplied prefix.

getPropertyNames() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getPropertyNumber() - Method in class loci.poi.ddf.EscherProperty

getPropertySet(String) - Method in class loci.poi.POIDocument

For a given named property entry, either return it or null if if it wasn't found

getPropertySize() - Method in class loci.poi.ddf.EscherComplexProperty

Caclulates the number of bytes required to serialize this property.

getPropertySize() - Method in class loci.poi.ddf.EscherProperty

Most properties are just 6 bytes in length.

getPropertyStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader

get start of Property Table

getPropertyType(short) - Static method in class loci.poi.ddf.EscherProperties

getPropertyValue() - Method in class loci.poi.ddf.EscherSimpleProperty

getProtect() - Method in class loci.poi.hssf.model.Sheet

Returns the ProtectRecord.

getProtect() - Method in class loci.poi.hssf.record.ObjectProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.ProtectionRev4Record

get whether the this is protected shared/tracked workbook or not

getProtect() - Method in class loci.poi.hssf.record.ProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.WindowProtectRecord

is this window protected or not

getProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether protection is enabled or disabled

getProtocolDescription() - Method in class ome.xml.model.Screen

getProtocolIdentifier() - Method in class ome.xml.model.Screen

getProtpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getPtgClass() - Method in class loci.poi.hssf.record.formula.Ptg

returns the class (REF/VALUE/ARRAY) for this Ptg

getPulse(String) - Method in class loci.formats.FormatReader

Retrieves an Pulse enumeration value for the given String.

getPulse() - Method in class ome.xml.model.Laser

getQTVersion() - Method in class loci.formats.gui.LegacyQTTools

Gets the QuickTime for Java version number.

getQuantizationStep() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets quantizationStep

getQuantizationType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets quantizationType

getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC

getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD

getQuantTypeSpec() - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the quantization type spec object associated to the quantizer.

getQuietInfo() - Method in class loci.plugins.in.ImporterOptions

getRadiusX() - Method in class ome.xml.model.Ellipse

getRadiusY() - Method in class ome.xml.model.Ellipse

getRandomAccessFile() - Method in class loci.common.FileHandle

Gets the random access file object backing this FileHandle.

getRandomAccessFile() - Method in class loci.common.NIOFileHandle

Gets the random access file object backing this FileHandle.

getRandomAccessFile() - Method in class ome.scifio.io.FileHandle

Gets the random access file object backing this FileHandle.

getRandomAccessFile() - Method in class ome.scifio.io.NIOFileHandle

Gets the random access file object backing this FileHandle.

getRange() - Method in class loci.formats.cache.CacheStrategy

getRange() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the number of objects to cache along each axis.

getRange() - Method in class loci.poi.hssf.util.RangeAddress

getRasterLength(int[]) - Static method in class loci.formats.FormatTools

Computes the number of raster values for a positional array with the given lengths.

getRaw() - Method in class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam

Returns the value of the raw parameter.

getRawData() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getRawDataSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord

getRawImageType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Returns an ImageTypeSpecifier describing an image whose underlying data array has the same format as the raw source pixel data.

getRawImageTypeSpecifier(int, int, int, int[], int[], int[], char[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

A utility method that returns an ImageTypeSpecifier suitable for decoding an image with the given parameters.

getRawSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the length of the raw sheetname in characters the length depends on the unicode flag

getRawValue(int) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, unshifted

getReader() - Method in class loci.formats.FileStitcher

Gets the wrapped reader prototype.

getReader(int) - Method in class loci.formats.FileStitcher

Gets the reader appropriate for use with the given image plane.

getReader(int, int) - Method in class loci.formats.FileStitcher

Gets the reader that should be used with the given series and image plane.

getReader(IFormatReader, Class<? extends IFormatReader>) - Static method in class loci.formats.FormatTools

Recursively look for the first underlying reader that is an instance of the given class.

getReader() - Method in class loci.formats.gui.FormatFileFilter

Returns the filter's reader.

getReader(String) - Method in class loci.formats.ImageReader

Gets the reader used to open the given file.

getReader() - Method in class loci.formats.ImageReader

Gets the reader used to open the current file.

getReader(Class<? extends IFormatReader>) - Method in class loci.formats.ImageReader

Gets the file format reader instance matching the given class.

getReader() - Method in class loci.formats.ReaderWrapper

Gets the wrapped reader.

getReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getReader() - Method in class loci.plugins.util.BFVirtualStack

getReader() - Method in class loci.tests.testng.Configuration

getReaders() - Method in class loci.formats.ImageReader

Gets all constituent file format readers.

getReadingOrder() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the reading order for far east versions (0 - Context, 1 - Left to right, 2 - right to left) - We could use some help with support for the far east.

getReadOnly() - Method in class loci.poi.hssf.record.FileSharingRecord

get the readonly

getReadOutRate() - Method in class loci.formats.in.MetamorphHandler

getReadOutRate() - Method in class ome.xml.model.DetectorSettings

getReagent(int) - Method in class ome.xml.model.Screen

getReagentAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getReagentAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getReagentAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getReagentAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getReagentAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getReagentAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getReagentAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getReagentAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getReagentCount(int) - Method in class loci.formats.meta.AggregateMetadata

getReagentCount(int) - Method in class loci.formats.meta.DummyMetadata

getReagentCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getReagentCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getReagentDescription(int, int) - Method in class loci.formats.meta.AggregateMetadata

getReagentDescription(int, int) - Method in class loci.formats.meta.DummyMetadata

getReagentDescription(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getReagentDescription(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getReagentID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getReagentID(int, int) - Method in class loci.formats.meta.DummyMetadata

getReagentID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getReagentID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getReagentIdentifier() - Method in class ome.xml.model.Reagent

getReagentName(int, int) - Method in class loci.formats.meta.AggregateMetadata

getReagentName(int, int) - Method in class loci.formats.meta.DummyMetadata

getReagentName(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getReagentName(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getReagentReagentIdentifier(int, int) - Method in class loci.formats.meta.AggregateMetadata

getReagentReagentIdentifier(int, int) - Method in class loci.formats.meta.DummyMetadata

getReagentReagentIdentifier(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getReagentReagentIdentifier(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getReagentSetDescription() - Method in class ome.xml.model.Screen

getReagentSetIdentifier() - Method in class ome.xml.model.Screen

getReason() - Method in exception loci.poi.hpsf.HPSFException

Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.

getReason() - Method in exception loci.poi.hpsf.HPSFRuntimeException

Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.

getReason() - Method in exception loci.poi.hssf.eventusermodel.HSSFUserException

Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.

getRecalc() - Method in class loci.poi.hssf.record.SaveRecalcRecord

get whether to recalculate formulas/etc before saving or not

getRecalcIdArray() - Method in class loci.poi.hssf.record.RecalcIdRecord

get the recalc array.

getRecordedProcessor() - Method in class loci.plugins.util.BFVirtualStack

getRecordId() - Method in class loci.poi.ddf.EscherChildAnchorRecord

The record id for the EscherChildAnchorRecord.

getRecordId() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The record id for this record.

getRecordId() - Method in class loci.poi.ddf.EscherClientDataRecord

Returns the identifier of this record.

getRecordId() - Method in class loci.poi.ddf.EscherDggRecord

getRecordId() - Method in class loci.poi.ddf.EscherDgRecord

getRecordId() - Method in class loci.poi.ddf.EscherRecord

Return the current record id.

getRecordId() - Method in class loci.poi.ddf.EscherSpgrRecord

The 16 bit identifier of this shape group record.

getRecordId() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getRecordId() - Method in class loci.poi.ddf.EscherSpRecord

getRecordName() - Method in class loci.poi.ddf.EscherBlipRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherBlipWMFRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherBSERecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherChildAnchorRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherClientDataRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherContainerRecord

getRecordName() - Method in class loci.poi.ddf.EscherDggRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherDgRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherOptRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherRecord

Subclasses should return the short name for this escher record.

getRecordName() - Method in class loci.poi.ddf.EscherSpgrRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherSpRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherTextboxRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.UnknownEscherRecord

The short name for this record

getRecordName() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getRecordName() - Method in class loci.poi.hssf.record.DrawingGroupRecord

getRecordName() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer

getRecordName() - Method in class loci.poi.hssf.record.DrawingSelectionRecord

getRecordName() - Method in class loci.poi.hssf.record.EscherAggregate

getRecordOffset() - Method in class loci.poi.hssf.record.RecordInputStream

getRecords() - Method in class loci.poi.hssf.model.Sheet

getRecords() - Method in class loci.poi.hssf.model.Workbook

getRecords() - Method in class loci.poi.hssf.model.WorkbookRecordList

getRecordSize() - Method in class loci.poi.ddf.EscherBitmapBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBlipRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBSERecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherClientAnchorRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherClientDataRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherContainerRecord

getRecordSize() - Method in class loci.poi.ddf.EscherDggRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherDgRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherMetafileBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherOptRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherPictBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherRecord

Subclasses should effeciently return the number of bytes required to serialize the record.

getRecordSize() - Method in class loci.poi.ddf.EscherSpgrRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherSpRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherTextboxRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.UnknownEscherRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Size of record (including 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getRecordSize() - Method in class loci.poi.hssf.record.AreaFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AreaRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisParentRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisUsedRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BackupRecord

getRecordSize() - Method in class loci.poi.hssf.record.BarRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BeginRecord

getRecordSize() - Method in class loci.poi.hssf.record.BlankRecord

getRecordSize() - Method in class loci.poi.hssf.record.BOFRecord

getRecordSize() - Method in class loci.poi.hssf.record.BookBoolRecord

getRecordSize() - Method in class loci.poi.hssf.record.BoolErrRecord

getRecordSize() - Method in class loci.poi.hssf.record.BottomMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BoundSheetRecord

getRecordSize() - Method in class loci.poi.hssf.record.CalcCountRecord

getRecordSize() - Method in class loci.poi.hssf.record.CalcModeRecord

getRecordSize() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.ChartFormatRecord

getRecordSize() - Method in class loci.poi.hssf.record.ChartRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.CodepageRecord

getRecordSize() - Method in class loci.poi.hssf.record.ColumnInfoRecord

getRecordSize() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.CountryRecord

getRecordSize() - Method in class loci.poi.hssf.record.DataFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DateWindow1904Record

getRecordSize() - Method in class loci.poi.hssf.record.DatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DBCellRecord

getRecordSize() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

getRecordSize() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

getRecordSize() - Method in class loci.poi.hssf.record.DeltaRecord

getRecordSize() - Method in class loci.poi.hssf.record.DimensionsRecord

getRecordSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord

Size of record (including 4 byte headers for all sections)

getRecordSize() - Method in class loci.poi.hssf.record.DrawingRecord

getRecordSize() - Method in class loci.poi.hssf.record.DSFRecord

getRecordSize() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.EndRecord

getRecordSize() - Method in class loci.poi.hssf.record.EndSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.EOFRecord

getRecordSize() - Method in class loci.poi.hssf.record.EscherAggregate

The number of bytes required to serialize this record.

getRecordSize() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetRecord

getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

returns the record size

getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTRecord

Returns the size of this record

getRecordSize() - Method in class loci.poi.hssf.record.FilePassRecord

getRecordSize() - Method in class loci.poi.hssf.record.FileSharingRecord

getRecordSize() - Method in class loci.poi.hssf.record.FnGroupCountRecord

getRecordSize() - Method in class loci.poi.hssf.record.FontBasisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.FontIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.FontRecord

getRecordSize() - Method in class loci.poi.hssf.record.FooterRecord

getRecordSize() - Method in class loci.poi.hssf.record.FormatRecord

getRecordSize() - Method in class loci.poi.hssf.record.FormulaRecord

getRecordSize() - Method in class loci.poi.hssf.record.FrameRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.GridsetRecord

getRecordSize() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.GutsRecord

getRecordSize() - Method in class loci.poi.hssf.record.HCenterRecord

getRecordSize() - Method in class loci.poi.hssf.record.HeaderRecord

getRecordSize() - Method in class loci.poi.hssf.record.HideObjRecord

getRecordSize() - Method in class loci.poi.hssf.record.IndexRecord

getRecordSize() - Method in class loci.poi.hssf.record.InterfaceEndRecord

getRecordSize() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

getRecordSize() - Method in class loci.poi.hssf.record.IterationRecord

getRecordSize() - Method in class loci.poi.hssf.record.LabelSSTRecord

getRecordSize() - Method in class loci.poi.hssf.record.LeftMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LegendRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LineFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LinkedDataRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.MergeCellsRecord

getRecordSize() - Method in class loci.poi.hssf.record.MMSRecord

getRecordSize() - Method in class loci.poi.hssf.record.NameRecord

returns the record size

getRecordSize() - Method in class loci.poi.hssf.record.NoteRecord

Size of record

getRecordSize() - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Size of record

getRecordSize() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.NumberRecord

getRecordSize() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.ObjectProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.ObjRecord

Size of record (excluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PageBreakRecord

getRecordSize() - Method in class loci.poi.hssf.record.PaletteRecord

getRecordSize() - Method in class loci.poi.hssf.record.PaneRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PasswordRecord

getRecordSize() - Method in class loci.poi.hssf.record.PasswordRev4Record

getRecordSize() - Method in class loci.poi.hssf.record.PlotAreaRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PrecisionRecord

getRecordSize() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

getRecordSize() - Method in class loci.poi.hssf.record.PrintHeadersRecord

getRecordSize() - Method in class loci.poi.hssf.record.PrintSetupRecord

getRecordSize() - Method in class loci.poi.hssf.record.ProtectionRev4Record

getRecordSize() - Method in class loci.poi.hssf.record.ProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.RecalcIdRecord

getRecordSize() - Method in class loci.poi.hssf.record.Record

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.RefModeRecord

getRecordSize() - Method in class loci.poi.hssf.record.RefreshAllRecord

getRecordSize() - Method in class loci.poi.hssf.record.RightMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.RowRecord

getRecordSize() - Method in class loci.poi.hssf.record.SaveRecalcRecord

getRecordSize() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.SCLRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SelectionRecord

getRecordSize() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesListRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesTextRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getRecordSize() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SSTRecord

getRecordSize() - Method in class loci.poi.hssf.record.StringRecord

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.StyleRecord

getRecordSize() - Method in class loci.poi.hssf.record.SupBookRecord

getRecordSize() - Method in class loci.poi.hssf.record.TabIdRecord

getRecordSize() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TextObjectRecord

getRecordSize() - Method in class loci.poi.hssf.record.TextRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TickRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TopMarginRecord

Size of record (exluding 4 byte header)

getRecordSize(UnicodeString.UnicodeRecordStats) - Method in class loci.poi.hssf.record.UnicodeString

getRecordSize() - Method in class loci.poi.hssf.record.UnitsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.UnknownRecord

getRecordSize() - Method in class loci.poi.hssf.record.UseSelFSRecord

getRecordSize() - Method in class loci.poi.hssf.record.ValueRangeRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.VCenterRecord

getRecordSize() - Method in class loci.poi.hssf.record.WindowOneRecord

getRecordSize() - Method in class loci.poi.hssf.record.WindowProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.WindowTwoRecord

getRecordSize() - Method in class loci.poi.hssf.record.WriteAccessRecord

getRecordSize() - Method in class loci.poi.hssf.record.WriteProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.WSBoolRecord

getRecordSizeForBlockCount(int) - Static method in class loci.poi.hssf.record.IndexRecord

Returns the size of an INdexRecord when it needs to index the specified number of blocks

getRecordSizeForRows(int) - Static method in class loci.poi.hssf.record.DBCellRecord

Returns the size of a DBCellRecord when it needs to reference a certain number of rows

getRecordSizeForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord

Given a number of strings (in the sst), returns the size of the extsst record

getRectangleFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleHeight(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleHeight(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleHeight(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleHeight(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleID(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleLocked(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleText(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleText(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleTheC(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleTheT(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleTransform(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleVisible(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleWidth(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleX(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleX(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectangleY(int, int) - Method in class loci.formats.meta.AggregateMetadata

getRectangleY(int, int) - Method in class loci.formats.meta.DummyMetadata

getRectangleY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getRectangleY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRectX1() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

getRectX2() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

getRectY1() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

getRectY2() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

getRed(int) - Method in class loci.formats.gui.Index16ColorModel

getRed(int) - Method in class loci.formats.gui.SignedColorModel

getRed(Object) - Method in class loci.formats.gui.SignedColorModel

getRed(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getRed(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getRed() - Method in class loci.poi.ddf.EscherRGBProperty

getRed() - Method in class ome.xml.model.primitives.Color

Returns the red component of this color.

getReds() - Method in class loci.formats.gui.Index16ColorModel

Return the array of red color components.

getRef() - Method in class loci.poi.ddf.EscherBSERecord

The reference count of this blip.

getReference() - Method in class loci.poi.hssf.usermodel.HSSFName

gets the reference of the named range

getReferences() - Method in interface ome.xml.model.OMEModel

getReferences() - Method in class ome.xml.model.OMEModelImpl

getReferenceType() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the reference type field for the LinkedData record.

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefAPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNAPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNVPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefVPtg

getRefractiveIndex() - Method in class loci.formats.in.ND2Handler

getRefractiveIndex() - Method in class ome.xml.model.ObjectiveSettings

getREFRecordAt(int) - Method in class loci.poi.hssf.record.ExternSheetRecord

returns the REF record (ExternSheetSubRecord)

getRefreshAll() - Method in class loci.poi.hssf.record.RefreshAllRecord

get whether to refresh all external data when loading a sheet

getRelativeTime() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the relativeTime associated with this Frame.

getRemainingData() - Method in class loci.poi.ddf.EscherBSERecord

Any remaining data in this record.

getRemainingData() - Method in class loci.poi.ddf.EscherClientAnchorRecord

Any remaining data in the record

getRemainingData() - Method in class loci.poi.ddf.EscherClientDataRecord

Any data recording this record.

getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getRenderingHints() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getRenderingHints() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getReorderedIndex(IFormatReader, String, int) - Static method in class loci.formats.FormatTools

Converts index from the given dimension order to the reader's native one.

getReorderedIndex(String, String, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Converts index from one dimension order to another.

getRepetitionRate() - Method in class ome.xml.model.Laser

getRequiredDirectories(String[]) - Method in class loci.formats.FormatReader

getRequiredDirectories(String[]) - Method in interface loci.formats.IFormatReader

Returns the number of parent directories that are important when processing the given list of files.

getRequiredDirectories(String[]) - Method in class loci.formats.ImageReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.BrukerReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.CellVoyagerReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.L2DReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.MIASReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.OperettaReader

getRequiredDirectories(String[]) - Method in class loci.formats.ReaderWrapper

getRequiredVersion() - Method in class loci.poi.hssf.record.BOFRecord

get the minimum version required to read this file

getReserved() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getReserved() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

getReserved() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the reserved bits - why would you do this?

getReserved1() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved1 field for the Axis record.

getReserved1() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved1 field for the CommonObjectData record.

getReserved2() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved2 field for the Axis record.

getReserved2() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved2 field for the CommonObjectData record.

getReserved2() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getReserved3() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved3 field for the Axis record.

getReserved3() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved3 field for the CommonObjectData record.

getReserved3() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getReserved4() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved4 field for the Axis record.

getReserved4() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved4 field for the TextObjectBase record.

getReserved5() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved5 field for the TextObjectBase record.

getReserved6() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved6 field for the TextObjectBase record.

getReserved7() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved7 field for the TextObjectBase record.

getResetMQ() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets resetMQ

getResolution() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Gets resolution.

getResolution() - Method in class loci.formats.FormatReader

getResolution() - Method in interface loci.formats.IFormatReader

Get the current resolution level.

getResolution() - Method in class loci.formats.ImageReader

getResolution() - Method in class loci.formats.ReaderWrapper

getResolution(ImageReader) - Method in class loci.poi.hssf.usermodel.HSSFPicture

The metadata of PNG and JPEG can contain the width of a pixel in millimeters.

getResolutionCount() - Method in class loci.formats.FormatReader

getResolutionCount() - Method in interface loci.formats.IFormatReader

Return the number of resolutions for the current series.

getResolutionCount() - Method in class loci.formats.ImageReader

getResolutionCount() - Method in class loci.formats.ReaderWrapper

getResolutionLevels() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of resolution levels the file JPEG 2000 data has.

getResolutionMultiplier() - Method in class loci.formats.tiff.IFD

Retrieve the value by which to multiply the X and Y resolution so that the resolutions are in microns per pixel.

getRestartMarkers() - Method in interface loci.formats.services.JPEGTurboService

getRestartMarkers() - Method in class loci.formats.services.JPEGTurboServiceImpl

getResult() - Method in interface mdbtools.dbengine.functions.Aggregate

getResult() - Method in class mdbtools.dbengine.functions.Count

getResult() - Method in class mdbtools.dbengine.functions.Max

getResult() - Method in class mdbtools.dbengine.functions.Min

getResult() - Method in class mdbtools.dbengine.functions.Sum

getResult() - Method in class mdbtools.dbengine.tasks.AggregateQuery

getResult() - Method in class mdbtools.dbengine.tasks.FilterData

getResult() - Method in class mdbtools.dbengine.tasks.LoadData

getResult() - Method in class mdbtools.dbengine.tasks.NonAggregateQuery

getResult() - Method in class mdbtools.dbengine.tasks.SimpleSort

getResult() - Method in interface mdbtools.dbengine.tasks.Task

getResULX(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getResULX(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getResULX(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal coordinate of the upper-left corner of the specified resolution level in the given component of the current tile.

getResULY(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical coordinate of the upper-left corner of the specified component in the given component of the current tile.

getResULY(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getResULY(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getRevision(String[]) - Method in class loci.plugins.macro.LociFunctions

getRevNumber() - Method in class loci.poi.hpsf.SummaryInformation

Returns the revision number (or null).

getRGB() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

getRGBChannelCount() - Method in class loci.formats.FormatReader

getRGBChannelCount() - Method in interface loci.formats.IFormatReader

Gets the number of channels returned with each call to openBytes.

getRGBChannelCount() - Method in class loci.formats.ImageReader

getRGBChannelCount() - Method in class loci.formats.ReaderWrapper

getRGBChannelCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getRgbColor() - Method in class loci.poi.ddf.EscherRGBProperty

getRgbColor() - Method in class loci.poi.hssf.record.TextRecord

Get the rgbColor field for the Text record.

getRichStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a string - for numeric cells we throw an exception.

getRight() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the right side of the footer.

getRight() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the right side of the header.

getRight() - Method in class mdbtools.dbengine.sql.Condition

getRight() - Method in class mdbtools.dbengine.sql.Equation

getRight() - Method in class mdbtools.dbengine.sql.Join

getRightBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getRightBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the right border color

getRights() - Method in class ome.xml.model.OME

getRightsHeld() - Method in class ome.xml.model.Rights

getRightsHolder() - Method in class ome.xml.model.Rights

getRightsRightsHeld(int) - Method in class loci.formats.meta.AggregateMetadata

getRightsRightsHeld(int) - Method in class loci.formats.meta.DummyMetadata

getRightsRightsHeld(int) - Method in interface loci.formats.meta.MetadataRetrieve

getRightsRightsHeld(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRightsRightsHolder(int) - Method in class loci.formats.meta.AggregateMetadata

getRightsRightsHolder(int) - Method in class loci.formats.meta.DummyMetadata

getRightsRightsHolder(int) - Method in interface loci.formats.meta.MetadataRetrieve

getRightsRightsHolder(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRKField() - Method in class loci.poi.hssf.record.RKRecord

getRKNumber() - Method in class loci.poi.hssf.record.RKRecord

Extract the value of the number

getRKNumberAt(int) - Method in class loci.poi.hssf.record.MulRKRecord

returns the rk number for column (coffset = column - field_2_first_col)

getRKType() - Method in class loci.poi.hssf.record.RKRecord

Get the type of the number

getRoi() - Method in class loci.plugins.util.RecordedImageProcessor

getROI(int) - Method in class ome.xml.model.OME

getROIAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getROIAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getROIAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getROIAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getROIAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getROIAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getROIAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getROIAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getROICount() - Method in class loci.formats.meta.AggregateMetadata

getROICount() - Method in class loci.formats.meta.DummyMetadata

getROICount() - Method in interface loci.formats.meta.MetadataRetrieve

getROICount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getROIDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getROIDescription(int) - Method in class loci.formats.meta.DummyMetadata

getROIDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getROIDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getROIID(int) - Method in class loci.formats.meta.AggregateMetadata

getROIID(int) - Method in class loci.formats.meta.DummyMetadata

getROIID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getROIID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getROILen() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Gives the length to read in current packet body to get all ROI information

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This functions gets a DataBlk the size of the current code-block an fills this block with the ROI mask.

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

This functions gets a DataBlk the size of the current code-block and fills this block with the ROI mask.

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This functions gets a DataBlk with the size of the current code-block and fills it with the ROI mask.

getROIMaskGenerator() - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function returns the ROI mask generator.

getROIName(int) - Method in class loci.formats.meta.AggregateMetadata

getROIName(int) - Method in class loci.formats.meta.DummyMetadata

getROIName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getROIName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getROINamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getROINamespace(int) - Method in class loci.formats.meta.DummyMetadata

getROINamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getROINamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getROIs() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets ROIs

getROIs() - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This function returns the ROIs in the image

getROIs() - Method in class loci.formats.in.ND2Handler

getRoot() - Method in class loci.formats.meta.AggregateMetadata

Unsupported with an AggregateMetadata.

getRoot() - Method in class loci.formats.meta.DummyMetadata

getRoot() - Method in class loci.formats.meta.FilterMetadata

getRoot() - Method in interface loci.formats.meta.MetadataStore

getRoot() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getRoot() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

get the root entry

getRoot() - Method in class loci.poi.poifs.property.PropertyTable

Get the root property

getRootIFD() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getRootName() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getRotation() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the degree of rotation.

getRotation() - Method in class loci.poi.hssf.record.TextRecord

getRotation() - Method in class loci.poi.hssf.record.TickRecord

rotate text (0=none, 1=normal, 2=90 degrees counterclockwise, 3=90 degrees clockwise)

getRotation() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the degree of rotation for the text in the cell

getRotationTransform(double) - Method in class loci.formats.FormatReader

getRow(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor

getRow(int) - Method in class loci.poi.hssf.model.Sheet

get the NEXT (from LOC) RowRecord where rownumber matches the given rownum.

getRow() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getRow() - Method in class loci.poi.hssf.record.BlankRecord

get the row this cell occurs on

getRow() - Method in class loci.poi.hssf.record.BoolErrRecord

getRow() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

get the row this cell occurs on

getRow() - Method in class loci.poi.hssf.record.formula.ExpPtg

getRow() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getRow() - Method in class loci.poi.hssf.record.formula.ReferencePtg

Returns the row number as a short, which will be wrapped (negative) for values between 32769 and 65535

getRow() - Method in class loci.poi.hssf.record.FormulaRecord

getRow() - Method in class loci.poi.hssf.record.LabelRecord

getRow() - Method in class loci.poi.hssf.record.LabelSSTRecord

getRow() - Method in class loci.poi.hssf.record.MulBlankRecord

get the row number of the cells this represents

getRow() - Method in class loci.poi.hssf.record.MulRKRecord

getRow() - Method in class loci.poi.hssf.record.NoteRecord

Return the row that contains the comment

getRow() - Method in class loci.poi.hssf.record.NumberRecord

getRow() - Method in class loci.poi.hssf.record.RKRecord

getRow() - Method in class loci.poi.hssf.usermodel.HSSFComment

Return the row of the cell that contains the comment

getRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the logical row (not physical) 0-based.

getRow() - Method in class loci.poi.hssf.util.CellReference

getRow(int) - Method in class mdbtools.dbengine.MemoryData

getRow() - Method in class ome.xml.model.Well

getRow1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the top-left corner of the shape.

getRow1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getRow2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the bottom-right corner of the current shape.

getRow2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getRowAsInt() - Method in class loci.poi.hssf.record.formula.ReferencePtg

Returns the row number as an int, between 0 and 65535

getRowBlockCount() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the number of row blocks.

getRowBlockSize(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getRowBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns all the row page breaks

getRowBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Retrieves all the horizontal page breaks

getRowCellBlockSize(int, int) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Tallies a count of the size of the cell records that are attached to the rows in the range specified.

getRowCount(int) - Method in interface loci.formats.services.MetakitService

getRowCount(String) - Method in interface loci.formats.services.MetakitService

getRowCount(int) - Method in class loci.formats.services.MetakitServiceImpl

getRowCount(String) - Method in class loci.formats.services.MetakitServiceImpl

getRowCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg

getRowCount(int) - Method in class ome.metakit.MetakitReader

Retrieve the number of rows in the table with the given index.

getRowCount(String) - Method in class ome.metakit.MetakitReader

Retrieve the number of rows in the named table.

getRowCountForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the number of physical rows within a block

getRowData(int, String) - Method in interface loci.formats.services.MetakitService

getRowData(int, int) - Method in interface loci.formats.services.MetakitService

getRowData(int, String) - Method in class loci.formats.services.MetakitServiceImpl

getRowData(int, int) - Method in class loci.formats.services.MetakitServiceImpl

getRowData(int, int) - Method in class ome.metakit.MetakitReader

Retrieve the given row of data from the table with the given index.

getRowData(int, String) - Method in class ome.metakit.MetakitReader

Retrieve the given row of data from the named table.

getRowFrom() - Method in class loci.poi.hssf.util.Region

get the upper left hand corner row number

getRowHeight() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

get the default row height

getRowLevelMax() - Method in class loci.poi.hssf.record.GutsRecord

get the maximum outline level for the row gutter.

getRowNamingConvention() - Method in class ome.xml.model.Plate

getRowNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

get row number this row represents

getRowNumber() - Method in class loci.poi.hssf.record.RowRecord

get the logical row number for this row (0 based index)

getRowOffset() - Method in class loci.poi.hssf.record.DBCellRecord

gets offset from the start of this DBCellRecord to the start of the first cell in the next DBCell block.

getRowRecord() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the lowlevel RowRecord represented by this object - should only be called by other parts of the high level API

getRows() - Method in class ome.xml.model.Plate

getRowsPerStrip() - Method in class loci.formats.tiff.IFD

Retrieves the number of rows per strip for image (TIFF tag RowsPerStrip) from this IFD.

getRowSumsBelow() - Method in class loci.poi.hssf.record.WSBoolRecord

get if row summaries appear below detail in the outline

getRowSumsBelow() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get if row summaries appear below detail in the outline

getRowSumsRight() - Method in class loci.poi.hssf.record.WSBoolRecord

get if col summaries appear right of the detail in the outline

getRowSumsRight() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get if col summaries appear right of the detail in the outline

getRowTo() - Method in class loci.poi.hssf.util.Region

get the lower right hand corner row number

getRPNPtg() - Method in class loci.poi.hssf.model.FormulaParser

API call to retrive the array of Ptgs created as a result of the parsing

getRPNPtg(int) - Method in class loci.poi.hssf.model.FormulaParser

getSample(BitBuffer, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

getSampleModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the SampleModel of the image.

getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getSamples(IFD, byte[]) - Method in class loci.formats.tiff.TiffParser

getSamples(IFD, byte[], int, int, long, long) - Method in class loci.formats.tiff.TiffParser

getSamples(IFD, byte[], int, int, long, long, int, int) - Method in class loci.formats.tiff.TiffParser

getSamplesPerPixel() - Method in class loci.formats.FormatWriter

Retrieve the number of samples per pixel for the current series.

getSamplesPerPixel() - Method in class loci.formats.tiff.IFD

Retrieves the number of samples per pixel for the image (TIFF tag SamplesPerPixel) from this IFD.

getSamplesPerPixel() - Method in class ome.xml.model.Channel

getSavedInPageBreakPreview() - Method in class loci.poi.hssf.record.WindowTwoRecord

was the sheet saved in page break view

getSaveLinkValues() - Method in class loci.poi.hssf.record.BookBoolRecord

get the save ext links flag

getSBAT() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Get the SBAT

getSBATBlockCount() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Get the number of SBAT blocks

getSBATStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getScale() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns true when scaling of the thumbnail is desired, false if cropping is desired.

getScale() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the scale field for the FontBasis record.

getScale() - Method in class loci.poi.hssf.record.PrintSetupRecord

getScale() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the scale.

getScanline(int) - Method in class loci.formats.codec.JPEGTileDecoder

getScenarioProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether scenario protection is enabled or disabled

getScreen(int) - Method in class ome.xml.model.OME

getScreen() - Method in class ome.xml.model.Reagent

getScreenAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getScreenAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getScreenAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata

getScreenAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata

getScreenAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenCount() - Method in class loci.formats.meta.AggregateMetadata

getScreenCount() - Method in class loci.formats.meta.DummyMetadata

getScreenCount() - Method in interface loci.formats.meta.MetadataRetrieve

getScreenCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getScreenDescription(int) - Method in class loci.formats.meta.DummyMetadata

getScreenDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenID(int) - Method in class loci.formats.meta.AggregateMetadata

getScreenID(int) - Method in class loci.formats.meta.DummyMetadata

getScreenID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenName(int) - Method in class loci.formats.meta.AggregateMetadata

getScreenName(int) - Method in class loci.formats.meta.DummyMetadata

getScreenName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenPlateRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getScreenPlateRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getScreenPlateRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenPlateRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenProtocolDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getScreenProtocolDescription(int) - Method in class loci.formats.meta.DummyMetadata

getScreenProtocolDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenProtocolDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenProtocolIdentifier(int) - Method in class loci.formats.meta.AggregateMetadata

getScreenProtocolIdentifier(int) - Method in class loci.formats.meta.DummyMetadata

getScreenProtocolIdentifier(int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenProtocolIdentifier(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenReagentSetDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getScreenReagentSetDescription(int) - Method in class loci.formats.meta.DummyMetadata

getScreenReagentSetDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenReagentSetDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenReagentSetIdentifier(int) - Method in class loci.formats.meta.AggregateMetadata

getScreenReagentSetIdentifier(int) - Method in class loci.formats.meta.DummyMetadata

getScreenReagentSetIdentifier(int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenReagentSetIdentifier(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getScreenType(int) - Method in class loci.formats.meta.AggregateMetadata

getScreenType(int) - Method in class loci.formats.meta.DummyMetadata

getScreenType(int) - Method in interface loci.formats.meta.MetadataRetrieve

getScreenType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getSecondaryUID() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the secondary UID

getSectionCount() - Method in class loci.poi.hpsf.PropertySet

Returns the number of Sections in the property set.

getSectionCount() - Method in class loci.poi.hpsf.SpecialPropertySet

getSections() - Method in class loci.poi.hpsf.PropertySet

Returns the Sections in the property set.

getSections() - Method in class loci.poi.hpsf.SpecialPropertySet

getSecurity() - Method in class loci.poi.hpsf.SummaryInformation

Returns a security code which is one of the following values:

getSegmentLength() - Method in class com.sun.media.imageio.stream.StreamSegment

Returns the length of the segment.

getSelected() - Method in class loci.poi.hssf.record.WindowTwoRecord

sheet tab is selected

getSelectedTab() - Method in class loci.poi.hssf.record.WindowOneRecord

get the selected tab number

getSelectedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the tab whose data is actually seen when the sheet is opened.

getSelection() - Method in class loci.poi.hssf.model.Sheet

getSequence(int) - Method in class loci.formats.in.PrairieMetadata

Gets the Sequence at the given cycle.

getSequences() - Method in class loci.formats.in.PrairieMetadata

Gets all Sequences, ordered by cycle.

getSerialNumber() - Method in class ome.xml.model.ManufacturerSpec

getSeries() - Method in class loci.formats.FileStitcher

getSeries() - Method in class loci.formats.FormatReader

getSeries() - Method in class loci.formats.FormatWriter

getSeries() - Method in interface loci.formats.IFormatReader

Gets the currently active series.

getSeries() - Method in interface loci.formats.IFormatWriter

Returns the current series.

getSeries() - Method in class loci.formats.ImageReader

getSeries() - Method in class loci.formats.ImageWriter

getSeries() - Method in class loci.formats.ReaderWrapper

getSeries() - Method in class loci.formats.WriterWrapper

getSeries(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesCount() - Method in class loci.formats.FileStitcher

getSeriesCount() - Method in class loci.formats.FormatReader

getSeriesCount() - Method in interface loci.formats.IFormatReader

Gets the number of series in this file.

getSeriesCount() - Method in class loci.formats.ImageReader

getSeriesCount() - Method in class loci.formats.in.ND2Handler

getSeriesCount() - Method in class loci.formats.ReaderWrapper

getSeriesCount() - Method in class loci.formats.TileStitcher

getSeriesCount() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getSeriesCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesCount() - Method in class loci.tests.testng.Configuration

getSeriesIndex() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the series index field for the DataFormat record.

getSeriesLabel(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getSeriesMeta(String) - Method in class loci.formats.FormatReader

Gets an entry from the metadata table for the current series.

getSeriesMetadata() - Method in class loci.formats.FileStitcher

getSeriesMetadata() - Method in class loci.formats.FormatReader

getSeriesMetadata() - Method in interface loci.formats.IFormatReader

Obtains the hashtable containing metadata field/value pairs from the current series in the current file.

getSeriesMetadata() - Method in class loci.formats.ImageReader

getSeriesMetadata() - Method in class loci.formats.ReaderWrapper

getSeriesMetadataValue(String) - Method in class loci.formats.FormatReader

getSeriesMetadataValue(String) - Method in interface loci.formats.IFormatReader

Obtains the specified metadata field's value for the current series in the current file.

getSeriesMetadataValue(String) - Method in class loci.formats.ImageReader

getSeriesMetadataValue(String) - Method in class loci.formats.ReaderWrapper

getSeriesMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesName(String[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesNumber() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the series number field for the DataFormat record.

getSeriesNumbers() - Method in class loci.poi.hssf.record.SeriesListRecord

Get the series numbers field for the SeriesList record.

getSeriesUsedFiles() - Method in class loci.formats.FileStitcher

getSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getSeriesUsedFiles() - Method in class loci.formats.FormatReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader

getSeriesUsedFiles() - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open the current series.

getSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open the current series.

getSeriesUsedFiles() - Method in class loci.formats.ImageReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AFIReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AnalyzeReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.APLReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BDReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BioRadReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BrukerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellomicsReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellSensReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellVoyagerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellWorxReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DeltavisionReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DicomReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FakeReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FlexReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FujiReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FV1000Reader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HamamatsuVMSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HitachiReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ICSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImagicReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImprovisionTiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.InCellReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.JEOLReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.L2DReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.LeicaReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MetamorphReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MIASReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MicromanagerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NDPISReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NiftiReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NRRDReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OMETiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OperettaReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PCORAWReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PDSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PerkinElmerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PrairieReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScanrReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScreenReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.SlidebookTiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TCSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TillVisionReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TrestleReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VarianFDFReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VisitechReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VolocityReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissCZIReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissLSMReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissTIFFReader

getSeriesUsedFiles() - Method in class loci.formats.ReaderWrapper

getSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getService() - Method in class loci.formats.Memoizer

getSHA1() - Method in class ome.xml.model.External

getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

Returns a TIFFIFD wherein all fields from the BaselineTIFFTagSet are copied by value and all other fields copied by reference.

getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

Returns a TIFFImageMetadata wherein all fields in the root IFD from the BaselineTIFFTagSet are copied by value and all other fields copied by reference.

getShape(int) - Method in class ome.xml.model.Union

getShapeCount(int) - Method in class loci.formats.meta.AggregateMetadata

getShapeCount(int) - Method in class loci.formats.meta.DummyMetadata

getShapeCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getShapeCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getShapeId() - Method in class loci.poi.ddf.EscherSpRecord

getShapeId() - Method in class loci.poi.hssf.record.NoteRecord

Object id for OBJ record that contains the comment

getShapeIdMax() - Method in class loci.poi.ddf.EscherDggRecord

getShapeType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getShapeType(int, int) - Method in class loci.formats.meta.DummyMetadata

getShapeType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getShapeType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getShapeType() - Method in class loci.poi.hssf.usermodel.HSSFSimpleShape

Gets the shape type.

getSheet() - Method in class loci.poi.hssf.usermodel.HSSFSheet

used internally in the API to get the low level Sheet record represented by this Object.

getSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Get sheet with the given name

getSheetAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Get the HSSFSheet object at the given index.

getSheetIndex(String) - Method in class loci.poi.hssf.model.Workbook

get the sheet's index

getSheetIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the index of the sheet by his name

getSheetIndex(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the index of the given sheet

getSheetIndexFromExternSheetIndex(int) - Method in class loci.poi.hssf.model.Workbook

Finds the sheet index for a particular external sheet number.

getSheetName(int) - Method in class loci.poi.hssf.model.Workbook

gets the name for a given sheet.

getSheetname() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the sheetname for this sheet.

getSheetName() - Method in class loci.poi.hssf.usermodel.HSSFName

Get the sheets name which this named range is referenced to

getSheetName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the sheet name

getSheetName() - Method in class loci.poi.hssf.util.CellReference

getSheetName() - Method in class loci.poi.hssf.util.RangeAddress

getSheetName(int) - Method in class loci.poi.hssf.util.SheetReferences

getSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the length of the sheetname in characters

getSheetReferences() - Method in class loci.poi.hssf.model.Workbook

getShort(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a short value from a byte array

getShort(byte[]) - Static method in class loci.poi.util.LittleEndian

get a short value from the beginning of a byte array

getShortArray(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a short array from a byte array.

getShortDescription() - Method in interface loci.poi.poifs.dev.POIFSViewable

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.DocumentNode

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.property.Property

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its short value from an IIOMetadataNode.

getShortRawValue(short) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, unshifted

getShorts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShorts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShorts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShortValue(short) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, appropriately shifted right, as a short.

getShowMetadataInfo() - Method in class loci.plugins.in.ImporterOptions

getShowOMEXMLInfo() - Method in class loci.plugins.in.ImporterOptions

getShowROIsInfo() - Method in class loci.plugins.in.ImporterOptions

getShrinkToFit() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to shrink the text to fit

getSid() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getSid() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

It's an aggregate...

getSid() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.AreaFormatRecord

getSid() - Method in class loci.poi.hssf.record.AreaRecord

getSid() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

getSid() - Method in class loci.poi.hssf.record.AxisOptionsRecord

getSid() - Method in class loci.poi.hssf.record.AxisParentRecord

getSid() - Method in class loci.poi.hssf.record.AxisRecord

getSid() - Method in class loci.poi.hssf.record.AxisUsedRecord

getSid() - Method in class loci.poi.hssf.record.BackupRecord

getSid() - Method in class loci.poi.hssf.record.BarRecord

getSid() - Method in class loci.poi.hssf.record.BeginRecord

getSid() - Method in class loci.poi.hssf.record.BlankRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.BOFRecord

getSid() - Method in class loci.poi.hssf.record.BookBoolRecord

getSid() - Method in class loci.poi.hssf.record.BoolErrRecord

getSid() - Method in class loci.poi.hssf.record.BottomMarginRecord

getSid() - Method in class loci.poi.hssf.record.BoundSheetRecord

getSid() - Method in class loci.poi.hssf.record.CalcCountRecord

getSid() - Method in class loci.poi.hssf.record.CalcModeRecord

getSid() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

getSid() - Method in class loci.poi.hssf.record.ChartFormatRecord

getSid() - Method in class loci.poi.hssf.record.ChartRecord

getSid() - Method in class loci.poi.hssf.record.CodepageRecord

getSid() - Method in class loci.poi.hssf.record.ColumnInfoRecord

getSid() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

getSid() - Method in class loci.poi.hssf.record.ContinueRecord

getSid() - Method in class loci.poi.hssf.record.CountryRecord

getSid() - Method in class loci.poi.hssf.record.DataFormatRecord

getSid() - Method in class loci.poi.hssf.record.DateWindow1904Record

getSid() - Method in class loci.poi.hssf.record.DatRecord

getSid() - Method in class loci.poi.hssf.record.DBCellRecord

getSid() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

getSid() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

getSid() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

getSid() - Method in class loci.poi.hssf.record.DeltaRecord

getSid() - Method in class loci.poi.hssf.record.DimensionsRecord

getSid() - Method in class loci.poi.hssf.record.DrawingGroupRecord

getSid() - Method in class loci.poi.hssf.record.DrawingRecord

getSid() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer

getSid() - Method in class loci.poi.hssf.record.DrawingSelectionRecord

getSid() - Method in class loci.poi.hssf.record.DSFRecord

getSid() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

getSid() - Method in class loci.poi.hssf.record.EndRecord

getSid() - Method in class loci.poi.hssf.record.EndSubRecord

getSid() - Method in class loci.poi.hssf.record.EOFRecord

getSid() - Method in class loci.poi.hssf.record.EscherAggregate

getSid() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

getSid() - Method in class loci.poi.hssf.record.ExternSheetRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getSid() - Method in class loci.poi.hssf.record.ExtSSTRecord

getSid() - Method in class loci.poi.hssf.record.FilePassRecord

getSid() - Method in class loci.poi.hssf.record.FileSharingRecord

getSid() - Method in class loci.poi.hssf.record.FnGroupCountRecord

getSid() - Method in class loci.poi.hssf.record.FontBasisRecord

getSid() - Method in class loci.poi.hssf.record.FontIndexRecord

getSid() - Method in class loci.poi.hssf.record.FontRecord

getSid() - Method in class loci.poi.hssf.record.FooterRecord

getSid() - Method in class loci.poi.hssf.record.FormatRecord

getSid() - Method in class loci.poi.hssf.record.FormulaRecord

getSid() - Method in class loci.poi.hssf.record.FrameRecord

getSid() - Method in class loci.poi.hssf.record.GridsetRecord

getSid() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

getSid() - Method in class loci.poi.hssf.record.GutsRecord

getSid() - Method in class loci.poi.hssf.record.HCenterRecord

getSid() - Method in class loci.poi.hssf.record.HeaderRecord

getSid() - Method in class loci.poi.hssf.record.HideObjRecord

getSid() - Method in class loci.poi.hssf.record.HorizontalPageBreakRecord

getSid() - Method in class loci.poi.hssf.record.IndexRecord

getSid() - Method in class loci.poi.hssf.record.InterfaceEndRecord

getSid() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

getSid() - Method in class loci.poi.hssf.record.IterationRecord

getSid() - Method in class loci.poi.hssf.record.LabelRecord

getSid() - Method in class loci.poi.hssf.record.LabelSSTRecord

getSid() - Method in class loci.poi.hssf.record.LeftMarginRecord

getSid() - Method in class loci.poi.hssf.record.LegendRecord

getSid() - Method in class loci.poi.hssf.record.LineFormatRecord

getSid() - Method in class loci.poi.hssf.record.LinkedDataRecord

getSid() - Method in class loci.poi.hssf.record.MergeCellsRecord

getSid() - Method in class loci.poi.hssf.record.MMSRecord

getSid() - Method in class loci.poi.hssf.record.MulBlankRecord

getSid() - Method in class loci.poi.hssf.record.MulRKRecord

getSid() - Method in class loci.poi.hssf.record.NameRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.NoteRecord

getSid() - Method in class loci.poi.hssf.record.NoteStructureSubRecord

getSid() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

getSid() - Method in class loci.poi.hssf.record.NumberRecord

getSid() - Method in class loci.poi.hssf.record.ObjectLinkRecord

getSid() - Method in class loci.poi.hssf.record.ObjectProtectRecord

getSid() - Method in class loci.poi.hssf.record.ObjRecord

getSid() - Method in class loci.poi.hssf.record.PageBreakRecord

getSid() - Method in class loci.poi.hssf.record.PaletteRecord

getSid() - Method in class loci.poi.hssf.record.PaneRecord

getSid() - Method in class loci.poi.hssf.record.PasswordRecord

getSid() - Method in class loci.poi.hssf.record.PasswordRev4Record

getSid() - Method in class loci.poi.hssf.record.PlotAreaRecord

getSid() - Method in class loci.poi.hssf.record.PlotGrowthRecord

getSid() - Method in class loci.poi.hssf.record.PrecisionRecord

getSid() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

getSid() - Method in class loci.poi.hssf.record.PrintHeadersRecord

getSid() - Method in class loci.poi.hssf.record.PrintSetupRecord

getSid() - Method in class loci.poi.hssf.record.ProtectionRev4Record

getSid() - Method in class loci.poi.hssf.record.ProtectRecord

getSid() - Method in class loci.poi.hssf.record.RecalcIdRecord

getSid() - Method in class loci.poi.hssf.record.Record

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.RecordInputStream

getSid() - Method in class loci.poi.hssf.record.RefModeRecord

getSid() - Method in class loci.poi.hssf.record.RefreshAllRecord

getSid() - Method in class loci.poi.hssf.record.RightMarginRecord

getSid() - Method in class loci.poi.hssf.record.RKRecord

getSid() - Method in class loci.poi.hssf.record.RowRecord

getSid() - Method in class loci.poi.hssf.record.SaveRecalcRecord

getSid() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

getSid() - Method in class loci.poi.hssf.record.SCLRecord

getSid() - Method in class loci.poi.hssf.record.SelectionRecord

getSid() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

getSid() - Method in class loci.poi.hssf.record.SeriesIndexRecord

getSid() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

getSid() - Method in class loci.poi.hssf.record.SeriesListRecord

getSid() - Method in class loci.poi.hssf.record.SeriesRecord

getSid() - Method in class loci.poi.hssf.record.SeriesTextRecord

getSid() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

getSid() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getSid() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

getSid() - Method in class loci.poi.hssf.record.SSTRecord

getSid() - Method in class loci.poi.hssf.record.StringRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.StyleRecord

getSid() - Method in class loci.poi.hssf.record.SupBookRecord

getSid() - Method in class loci.poi.hssf.record.TabIdRecord

getSid() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getSid() - Method in class loci.poi.hssf.record.TextRecord

getSid() - Method in class loci.poi.hssf.record.TickRecord

getSid() - Method in class loci.poi.hssf.record.TopMarginRecord

getSid() - Method in class loci.poi.hssf.record.UnicodeString

getSid() - Method in class loci.poi.hssf.record.UnitsRecord

getSid() - Method in class loci.poi.hssf.record.UnknownRecord

getSid() - Method in class loci.poi.hssf.record.UseSelFSRecord

getSid() - Method in class loci.poi.hssf.record.ValueRangeRecord

getSid() - Method in class loci.poi.hssf.record.VCenterRecord

getSid() - Method in class loci.poi.hssf.record.VerticalPageBreakRecord

getSid() - Method in class loci.poi.hssf.record.WindowOneRecord

getSid() - Method in class loci.poi.hssf.record.WindowProtectRecord

getSid() - Method in class loci.poi.hssf.record.WindowTwoRecord

getSid() - Method in class loci.poi.hssf.record.WriteAccessRecord

getSid() - Method in class loci.poi.hssf.record.WriteProtectRecord

getSid() - Method in class loci.poi.hssf.record.WSBoolRecord

getSignificantBits() - Method in class ome.xml.model.Pixels

getSimpleShortArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

get a short array from a byte array.

getSingleSection() - Method in class loci.poi.hpsf.PropertySet

If the PropertySet has only a single section this method returns it.

getSize(int) - Static method in class jj2000.j2k.image.DataBlk

Returns the size in bits, given the data type.

getSize() - Method in class jj2000.j2k.util.ThreadPool

Returns the size of the pool.

getSize(Image) - Static method in class loci.formats.gui.AWTImageTools

Gets the width and height of the given AWT image, waiting for it to finish loading if necessary.

getSize() - Method in class loci.plugins.util.BFVirtualStack

getSize() - Method in class loci.poi.ddf.EscherBSERecord

Blip size in stream.

getSize() - Method in class loci.poi.hpsf.MutableSection

Returns the section's size.

getSize() - Method in class loci.poi.hpsf.Property

Returns the property's size in bytes.

getSize() - Method in class loci.poi.hpsf.Section

Returns the section's size in bytes.

getSize() - Method in class loci.poi.hssf.model.Sheet

getSize() - Method in class loci.poi.hssf.model.Workbook

getSize() - Method in interface loci.poi.hssf.record.CustomField

getSize() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getSize() - Method in class loci.poi.hssf.record.formula.AddPtg

getSize() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getSize() - Method in class loci.poi.hssf.record.formula.AreaPtg

getSize() - Method in class loci.poi.hssf.record.formula.ArrayPtg

This size includes the size of the array Ptg plus the Array Ptg Token value size

getSize() - Method in class loci.poi.hssf.record.formula.AttrPtg

getSize() - Method in class loci.poi.hssf.record.formula.BoolPtg

getSize() - Method in class loci.poi.hssf.record.formula.ConcatPtg

getSize() - Method in class loci.poi.hssf.record.formula.DividePtg

getSize() - Method in class loci.poi.hssf.record.formula.EqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.ErrPtg

getSize() - Method in class loci.poi.hssf.record.formula.ExpPtg

getSize() - Method in class loci.poi.hssf.record.formula.FuncPtg

getSize() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

getSize() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the size of the sid

getSize() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

getSize() - Method in class loci.poi.hssf.record.formula.IntPtg

getSize() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the size of the sid

getSize() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getSize() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getSize() - Method in class loci.poi.hssf.record.formula.MissingArgPtg

getSize() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getSize() - Method in class loci.poi.hssf.record.formula.NamePtg

getSize() - Method in class loci.poi.hssf.record.formula.NameXPtg

getSize() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.NumberPtg

getSize() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getSize() - Method in class loci.poi.hssf.record.formula.PercentPtg

getSize() - Method in class loci.poi.hssf.record.formula.PowerPtg

getSize() - Method in class loci.poi.hssf.record.formula.Ptg

getSize() - Method in class loci.poi.hssf.record.formula.RangePtg

getSize() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getSize() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getSize() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

getSize() - Method in class loci.poi.hssf.record.formula.StringPtg

getSize() - Method in class loci.poi.hssf.record.formula.SubtractPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnionPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnknownPtg

getSize() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

getSize() - Method in interface loci.poi.poifs.filesystem.DocumentEntry

get the zize of the document, in bytes

getSize() - Method in class loci.poi.poifs.filesystem.DocumentNode

get the zize of the document, in bytes

getSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument

getSize() - Method in class loci.poi.poifs.property.Property

find out the document size

getSize() - Method in class ome.xml.model.BinaryFile

getSizeC() - Method in class loci.formats.ChannelFiller

getSizeC() - Method in class loci.formats.DimensionSwapper

getSizeC() - Method in class loci.formats.FileStitcher

getSizeC() - Method in class loci.formats.FormatReader

getSizeC() - Method in interface loci.formats.IFormatReader

Gets the size of the C dimension.

getSizeC() - Method in class loci.formats.ImageReader

getSizeC() - Method in class loci.formats.ReaderWrapper

getSizeC() - Method in interface loci.formats.services.WlzService

Gets number of channels.

getSizeC() - Method in class loci.formats.services.WlzServiceImpl

getSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeC() - Method in class loci.tests.testng.Configuration

getSizeC() - Method in class ome.xml.model.Pixels

getSizeEMU() - Method in class loci.poi.ddf.EscherMetafileBlip

getSizeEMU() - Method in class loci.poi.ddf.EscherPictBlip

getSizeOfElements() - Method in class loci.poi.ddf.EscherArrayProperty

getSizeOfType(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the number of bytes used to store a value of the given data type.

getSizeT() - Method in class loci.formats.DimensionSwapper

getSizeT() - Method in class loci.formats.FileStitcher

getSizeT() - Method in class loci.formats.FormatReader

getSizeT() - Method in interface loci.formats.IFormatReader

Gets the size of the T dimension.

getSizeT() - Method in class loci.formats.ImageReader

getSizeT() - Method in class loci.formats.ReaderWrapper

getSizeT() - Method in interface loci.formats.services.WlzService

Gets number of time samples.

getSizeT() - Method in class loci.formats.services.WlzServiceImpl

getSizeT(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeT() - Method in class loci.tests.testng.Configuration

getSizeT() - Method in class ome.xml.model.Pixels

getSizeX() - Method in class loci.formats.DimensionSwapper

getSizeX() - Method in class loci.formats.FileStitcher

getSizeX() - Method in class loci.formats.FormatReader

getSizeX() - Method in interface loci.formats.IFormatReader

Gets the size of the X dimension.

getSizeX() - Method in class loci.formats.ImageReader

getSizeX() - Method in class loci.formats.ReaderWrapper

getSizeX() - Method in interface loci.formats.services.WlzService

Gets width in pixels/voxels.

getSizeX() - Method in class loci.formats.services.WlzServiceImpl

getSizeX() - Method in class loci.formats.TileStitcher

getSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeX() - Method in class loci.tests.testng.Configuration

getSizeX() - Method in class ome.xml.model.Pixels

getSizeY() - Method in class loci.formats.DimensionSwapper

getSizeY() - Method in class loci.formats.FileStitcher

getSizeY() - Method in class loci.formats.FormatReader

getSizeY() - Method in interface loci.formats.IFormatReader

Gets the size of the Y dimension.

getSizeY() - Method in class loci.formats.ImageReader

getSizeY() - Method in class loci.formats.ReaderWrapper

getSizeY() - Method in interface loci.formats.services.WlzService

Gets height in pixels/voxels.

getSizeY() - Method in class loci.formats.services.WlzServiceImpl

getSizeY() - Method in class loci.formats.TileStitcher

getSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeY() - Method in class loci.tests.testng.Configuration

getSizeY() - Method in class ome.xml.model.Pixels

getSizeZ() - Method in class loci.formats.DimensionSwapper

getSizeZ() - Method in class loci.formats.FileStitcher

getSizeZ() - Method in class loci.formats.FormatReader

getSizeZ() - Method in interface loci.formats.IFormatReader

Gets the size of the Z dimension.

getSizeZ() - Method in class loci.formats.ImageReader

getSizeZ() - Method in class loci.formats.ReaderWrapper

getSizeZ() - Method in interface loci.formats.services.WlzService

Gets depth (number of x-y planes) in voxels.

getSizeZ() - Method in class loci.formats.services.WlzServiceImpl

getSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeZ() - Method in class loci.tests.testng.Configuration

getSizeZ() - Method in class ome.xml.model.Pixels

getSlideCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the slide count or 0 if the DocumentSummaryInformation does not contain a slide count.

getSmallBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

return the array of SmallDocumentBlocks used

getSmallDocumentBlocks(RawDataBlockList, RootProperty, int) - Static method in class loci.poi.poifs.storage.SmallBlockTableReader

fetch the small document block list from an existing file

getSnapshotPixels() - Method in class loci.plugins.util.RecordedImageProcessor

getSOP() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets SOP.

getSOP() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets SOP

getSort() - Method in class mdbtools.dbengine.sql.OrderBy

getSource() - Method in class loci.formats.cache.Cache

Gets the cache's caching source.

getSource() - Method in class loci.formats.cache.CacheEvent

Gets the source of the cache update.

getSources() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

getSources() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getSpacing() - Method in class loci.poi.hssf.record.LegendRecord

Get the spacing field for the Legend record.

getSpContainer() - Method in class loci.poi.hssf.model.AbstractShape

getSpContainer() - Method in class loci.poi.hssf.model.LineShape

getSpContainer() - Method in class loci.poi.hssf.model.PictureShape

getSpContainer() - Method in class loci.poi.hssf.model.PolygonShape

getSpContainer() - Method in class loci.poi.hssf.model.SimpleFilledShape

getSpContainer() - Method in class loci.poi.hssf.model.TextboxShape

getSpec(int, int) - Method in class jj2000.j2k.ModuleSpec

Gets value of specified tile-component without knowing if a specific tile-component value has been previously entered.

getSpecificationTitle() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return the Specification Title string for the package.

getSpecificBuiltinRecord(byte, int) - Method in class loci.poi.hssf.model.Workbook

Retrieves the Builtin NameRecord that matches the name and index There shouldn't be too many names to make the sequential search too slow

getSpecified() - Method in class jj2000.j2k.roi.MaxShiftSpec

getSpecified() - Method in class jj2000.j2k.StringSpec

getSpecifyRangesInfo() - Method in class loci.plugins.in.ImporterOptions

getSpecValType(int, int) - Method in class jj2000.j2k.ModuleSpec

Return the spec type of the given tile-component.

getSpeeds() - Method in class loci.formats.in.ND2Handler

getSplitChannelsInfo() - Method in class loci.plugins.in.ImporterOptions

getSplitFocalPlanesInfo() - Method in class loci.plugins.in.ImporterOptions

getSplitTimepointsInfo() - Method in class loci.plugins.in.ImporterOptions

getSSTIndex() - Method in class loci.poi.hssf.record.LabelSSTRecord

get the index to the string in the SSTRecord

getSSTString(int) - Method in class loci.poi.hssf.model.Workbook

given an index into the SST table, this function returns the corresponding String value

getSSTString(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

Do not call this method from your applications. Use the methods available in the HSSFRow to get string HSSFCells

getStackFormat() - Method in class loci.plugins.in.ImporterOptions

getStackFormatInfo() - Method in class loci.plugins.in.ImporterOptions

getStackFormats() - Method in class loci.plugins.in.ImporterOptions

getStackOrder() - Method in class loci.plugins.in.ImporterOptions

getStackOrder() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getStackOrderInfo() - Method in class loci.plugins.in.ImporterOptions

getStackOrders() - Method in class loci.plugins.in.ImporterOptions

getStackTrace(Throwable) - Static method in class loci.common.DebugTools

Extracts the given exception's corresponding stack trace to a string.

getStackTrace(Throwable) - Static method in class ome.scifio.common.DebugTools

Extracts the given exception's corresponding stack trace to a string.

getStageLabel() - Method in class loci.formats.in.MetamorphHandler

getStageLabel() - Method in class ome.xml.model.Image

getStageLabelName(int) - Method in class loci.formats.meta.AggregateMetadata

getStageLabelName(int) - Method in class loci.formats.meta.DummyMetadata

getStageLabelName(int) - Method in interface loci.formats.meta.MetadataRetrieve

getStageLabelName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getStageLabelX(int) - Method in class loci.formats.meta.AggregateMetadata

getStageLabelX(int) - Method in class loci.formats.meta.DummyMetadata

getStageLabelX(int) - Method in interface loci.formats.meta.MetadataRetrieve

getStageLabelX(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getStageLabelY(int) - Method in class loci.formats.meta.AggregateMetadata

getStageLabelY(int) - Method in class loci.formats.meta.DummyMetadata

getStageLabelY(int) - Method in interface loci.formats.meta.MetadataRetrieve

getStageLabelY(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getStageLabelZ(int) - Method in class loci.formats.meta.AggregateMetadata

getStageLabelZ(int) - Method in class loci.formats.meta.DummyMetadata

getStageLabelZ(int) - Method in interface loci.formats.meta.MetadataRetrieve

getStageLabelZ(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getStagePositionX() - Method in class loci.formats.in.MetamorphHandler

getStagePositionY() - Method in class loci.formats.in.MetamorphHandler

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStartBlock() - Method in class loci.poi.poifs.property.Property

getStartBlock() - Method in class loci.poi.poifs.property.PropertyTable

Get the start block for the property table

getStartBlock() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

get the starting block

getStartLevelROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets startLevel

getStartPos() - Method in class com.sun.media.imageio.stream.StreamSegment

Returns the starting position of the segment.

getStartRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the physical row number of the first row in a block

getStartTime() - Method in class ome.xml.model.PlateAcquisition

getStatistics(int, int, double, double) - Method in class loci.plugins.util.VirtualImagePlus

getStatus() - Method in class ome.xml.model.Plate

getStatusBarLength() - Method in class loci.poi.hssf.record.NameRecord

get the status bar text length

getStatusBarText() - Method in class loci.poi.hssf.record.NameRecord

gets the status bar text

getStatusMessage() - Method in class loci.common.StatusEvent

Gets status message.

getStatusMessage() - Method in class ome.scifio.common.StatusEvent

Gets status message.

getStep() - Method in class loci.formats.FilePattern

getStep() - Method in class loci.formats.FilePatternBlock

getStep(int) - Static method in enum loci.plugins.in.ImportStep

getStep() - Method in enum loci.plugins.in.ImportStep

getStitchTilesInfo() - Method in class loci.plugins.in.ImporterOptions

getStorageClsid() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

Gets the storage clsid of the directory entry

getStorageClsid() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Gets the storage clsid of the directory entry

getStorageClsid() - Method in class loci.poi.poifs.property.Property

Sets the storage clsid, which is the Class ID of a COM object which reads and writes this stream

getStr() - Method in class loci.poi.hssf.record.TextObjectRecord

getStrategy() - Method in class loci.formats.cache.Cache

Gets the cache's caching strategy.

getStream() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the ImageOutputStream that will be written.

getStream() - Method in class loci.formats.tiff.TiffParser

Gets the stream from which TIFF data is being parsed.

getStream() - Method in class loci.formats.tiff.TiffSaver

Gets the stream from which TIFF data is being saved.

getStream() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

getStream() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getStreamId() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Gets the stream ID containing the actual data.

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getStreamMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getStreamPos() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getStreamPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getStreams() - Method in class loci.formats.tools.AmiraParameters

getStreamSegment(long, int) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper

Returns a StreamSegment object indicating the location of the initial portion of a desired segment in the source stream.

getStreamSegment(long, int, StreamSegment) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper

Sets the values of a StreamSegment object indicating the location of the initial portion of a desired segment in the source stream.

getStrikeout() - Method in class loci.poi.hssf.usermodel.HSSFFont

get whether to use a strikeout horizontal line through the text or not

getString(String, String) - Static method in class com.sun.media.imageioimpl.common.I18NImpl

Returns the message string with the specified key from the "properties" file in the package containing the class with the specified name.

getString(int) - Method in class loci.poi.hssf.record.SSTRecord

Get a particular string by its index

getString() - Method in class loci.poi.hssf.record.StringRecord

getString() - Method in class loci.poi.hssf.record.UnicodeString

get the actual string this contains as a java String object

getString() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Returns the plain string representation.

getString() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.

Use the HSSFRichTextString return

getStringElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its String value from an IIOMetadataNode.

getStringLength() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getStringLength() - Method in class loci.poi.hssf.record.LabelRecord

get the number of characters this string contains

getStringOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the string option with the given key.

getStringRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getStringValue() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getStringWidth(String) - Method in class loci.plugins.util.RecordedImageProcessor

getStringWidth(String) - Method in class loci.poi.hssf.usermodel.FontDetails

Gets the width of all characters in a string.

getStripByteCounts() - Method in class loci.formats.tiff.IFD

Retrieves strip byte counts for the image (TIFF tag StripByteCounts) from this IFD.

getStripOffsets() - Method in class loci.formats.tiff.IFD

Retrieves the strip offsets for the image (TIFF tag StripOffsets) from this IFD.

getStripOrTileByteCountsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getStripOrTileOffsetsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getStroke() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getStroke() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getStrokeColor() - Method in class ome.xml.model.Shape

getStrokeDashArray() - Method in class ome.xml.model.Shape

getStrokeWidth() - Method in class ome.xml.model.Shape

getStructuredAnnotations() - Method in class ome.xml.model.BooleanAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.CommentAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.DoubleAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.FileAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.ListAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.LongAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.OME

getStructuredAnnotations() - Method in class ome.xml.model.TagAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.TermAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.TimestampAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.XMLAnnotation

getStylesheet(String, Class<?>) - Static method in class loci.common.xml.XMLTools

Gets an XSLT template from the given resource location.

getStylesheet(String, Class<?>) - Static method in class ome.scifio.xml.XMLTools

Gets an XSLT template from the given resource location.

getSubband(int, int) - Method in class jj2000.j2k.wavelet.Subband

Returns a reference to the Subband element to which the specified point belongs.

getSubbandByIdx(int, int) - Method in class jj2000.j2k.wavelet.Subband

Returns a subband element in the tree, given its resolution level and subband index.

getSubbandRectROIMask(int, int) - Method in class jj2000.j2k.roi.encoder.SubbandROIMask

Returns a reference to the Subband mask element to which the specified point belongs.

getSubexpressionLength() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getSubimage(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Returns a subimage of the specified image.

getSubimage(byte[], byte[], int, int, int, int, int, int, int, int, boolean) - Static method in class loci.formats.ImageTools

getSubject() - Method in class loci.poi.hpsf.SummaryInformation

Returns the subject (or null).

getSubRecords() - Method in class loci.poi.hssf.record.ObjRecord

getSuffix() - Method in class loci.formats.FilePattern

Gets the pattern's text string after all numerical ranges.

getSuffixes() - Method in class loci.formats.FormatHandler

getSuffixes() - Method in interface loci.formats.IFormatHandler

Gets the default file suffixes for this file format.

getSuffixes() - Method in class loci.formats.ImageReader

getSuffixes() - Method in class loci.formats.ImageWriter

getSuffixes() - Method in class loci.formats.ReaderWrapper

getSuffixes() - Method in class loci.formats.WriterWrapper

getSummaryInformation() - Method in class loci.poi.POIDocument

Fetch the Summary Information of the document

getSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

getSupbookpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the supbookpos.

getSuperSubScript() - Method in class loci.poi.hssf.record.FontRecord

get the type of super or subscript for the font

getSupPixelTypes() - Method in interface loci.formats.services.WlzService

Gets supported pixel types.

getSupPixelTypes() - Method in class loci.formats.services.WlzServiceImpl

getSupportedMetadataLevels() - Method in class loci.formats.DelegateReader

getSupportedMetadataLevels() - Method in class loci.formats.FormatReader

getSupportedMetadataLevels() - Method in class loci.formats.ImageReader

getSupportedMetadataLevels() - Method in interface loci.formats.IMetadataConfigurable

getSupportedMetadataLevels() - Method in class loci.formats.ReaderWrapper

getSwapDimensionsInfo() - Method in class loci.plugins.in.ImporterOptions

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the high-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the low-pass synthesis filter.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the specified synthesis subband tree

getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the specified synthesis subband tree

getT() - Method in class loci.formats.gui.ImageViewer

Gets the T value of the currently displayed image.

getTabIdArray() - Method in class loci.poi.hssf.record.TabIdRecord

get the tab array.

getTable(String) - Method in class loci.common.IniList

Gets the table with the given name (header).

getTable() - Method in class loci.common.IniTable

getTable(int) - Method in interface mdbtools.dbengine.DataSource

getTable() - Method in class mdbtools.dbengine.sql.FQColumn

getTable(int) - Method in class mdbtools.dbengine.sql.Select

getTable(String) - Method in class ome.scifio.common.IniList

Gets the table with the given name (header).

getTableCount() - Method in interface loci.formats.services.MetakitService

getTableCount() - Method in class loci.formats.services.MetakitServiceImpl

getTableCount() - Method in interface mdbtools.dbengine.DataSource

getTableCount() - Method in class mdbtools.dbengine.sql.Select

getTableCount() - Method in class ome.metakit.MetakitReader

Retrieve the number of tables in this database file.

getTableData(String) - Method in interface loci.formats.services.MetakitService

getTableData(int) - Method in interface loci.formats.services.MetakitService

getTableData(String) - Method in class loci.formats.services.MetakitServiceImpl

getTableData(int) - Method in class loci.formats.services.MetakitServiceImpl

getTableData(int) - Method in class ome.metakit.MetakitReader

Retrieve all of the tabular data for the table with the given index.

getTableData(String) - Method in class ome.metakit.MetakitReader

Retrieve all of the tabular data for the named table.

getTableNames() - Method in interface loci.formats.services.MetakitService

getTableNames() - Method in class loci.formats.services.MetakitServiceImpl

getTableNames() - Method in class ome.metakit.MetakitReader

Retrieve the name of every table in this database file.

getTabpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getTabWidthRatio() - Method in class loci.poi.hssf.record.WindowOneRecord

ratio of the width of the tabs to the horizontal scrollbar

getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the TIFFTag which has tag number equal to tagNumber or null if no such tag exists in the TIFFTagSets associated with this directory.

getTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Retrieves the tag associated with this field.

getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Returns the TIFFTag from this set that is associated with the given tag number, or null if no tag exists for that number.

getTag(String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Returns the TIFFTag having the given tag name, or null if the named tag does not belong to this tag set.

getTag(int, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getTag(String, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getTag() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's Tag value.

getTag() - Method in class loci.poi.ddf.EscherBSERecord

unused

getTagAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getTagAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getTagAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getTagAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTagAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTagAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTagAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getTagAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTagAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTagAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getTagAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getTagAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTagAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTagAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getTagAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getTagAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getTagAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTagAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getTagAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getTagAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTagAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTagAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getTagAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getTagAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTagAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTagAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getTagAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getTagAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTagAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTagAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata

getTagAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata

getTagAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTagAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTagNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Retrieves an unmodifiable lexicographically increasing set of tag names.

getTagNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Retrieves the tag number in the range [0, 65535].

getTagNumbers() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Retrieves an unmodifiable numerically increasing set of tag numbers.

getTagSet() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the TIFFTagSet of which this tag is a part.

getTagSetList() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the TIFFTagSets of which this directory is aware.

getTargetBitrate(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the target bitrate of the optmimization point 'n'.

getTargetNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the target number of read bytes.

getTargetRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the target decoding rate in bits per pixel.

getTBegin(int) - Method in class loci.plugins.in.ImporterOptions

getTBegin(int) - Method in class loci.plugins.in.ImportProcess

getTCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getTemperature() - Method in class loci.formats.in.MetamorphHandler

getTemperature() - Method in class ome.xml.model.ImagingEnvironment

getTemperatures() - Method in class loci.formats.in.ND2Handler

getTemplate() - Method in class loci.poi.hpsf.SummaryInformation

Returns the template (or null).

getTEnd(int) - Method in class loci.plugins.in.ImporterOptions

getTEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getTermAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getTermAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getTermAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getTermAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTermAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTermAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTermAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getTermAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTermAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTermAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getTermAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getTermAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTermAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTermAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getTermAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getTermAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getTermAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTermAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getTermAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getTermAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTermAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTermAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getTermAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getTermAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTermAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTermAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getTermAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getTermAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTermAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTermAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata

getTermAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata

getTermAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTermAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTerminateOnByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets terminateOnByte

getText() - Method in class loci.poi.hssf.extractor.ExcelExtractor

Retreives the text contents of the file

getText() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the text field for the SeriesText record.

getText() - Method in class loci.poi.POITextExtractor

Retrieves all the text from the document.

getText() - Method in class ome.xml.model.Shape

getTextFooter() - Static method in class loci.formats.tools.PrintFormatTable

getTextFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getTextHeader() - Static method in class loci.formats.tools.PrintFormatTable

getTextLength() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the text length field for the SeriesText record.

getTextLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the text length field for the TextObjectBase record.

getTextObjectRecord() - Method in class loci.poi.hssf.model.TextboxShape

getTextOrientation() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the text orientation field for the TextObjectBase record.

getTextRotation() - Method in class loci.poi.hssf.record.TextRecord

Get the text rotation field for the Text record.

getTextsLength() - Method in class loci.poi.hssf.record.NameRecord

gets the length of all texts

getTFrames(int) - Method in class loci.formats.in.LegacyND2Reader

getTheC() - Method in class ome.xml.model.Plane

getTheC() - Method in class ome.xml.model.Shape

getTheT() - Method in class ome.xml.model.Plane

getTheT() - Method in class ome.xml.model.Shape

getTheZ() - Method in class ome.xml.model.Plane

getTheZ() - Method in class ome.xml.model.Shape

getThreadConcurrency() - Static method in class jj2000.j2k.util.NativeServices

Returns the current concurrency level.

getThumbnail() - Method in class loci.poi.hpsf.SummaryInformation

Returns the thumbnail (or null) when this method is implemented.

getThumbnail() - Method in class loci.poi.hpsf.Thumbnail

Returns the thumbnail as a byte[] in VT_CF format.

getThumbnailAsWMF() - Method in class loci.poi.hpsf.Thumbnail

Returns the Thumbnail as a byte[] of WMF data if the Thumbnail's Clipboard Format Tag is CFTAG_WINDOWS and its Clipboard Format is CF_METAFILEPICT

getThumbnailIFDs() - Method in class loci.formats.in.MinimalTiffReader

Gets the list of IFDs associated with the current TIFF's thumbnails.

getThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser

Returns thumbnail IFDs.

getThumbSizeX() - Method in class loci.formats.FileStitcher

getThumbSizeX() - Method in class loci.formats.FormatReader

getThumbSizeX() - Method in interface loci.formats.IFormatReader

Get the size of the X dimension for the thumbnail.

getThumbSizeX() - Method in class loci.formats.ImageReader

getThumbSizeX() - Method in class loci.formats.in.LeicaSCNReader

getThumbSizeX() - Method in class loci.formats.in.MinimalTiffReader

getThumbSizeX() - Method in class loci.formats.ReaderWrapper

getThumbSizeX() - Method in class loci.tests.testng.Configuration

getThumbSizeY() - Method in class loci.formats.FileStitcher

getThumbSizeY() - Method in class loci.formats.FormatReader

getThumbSizeY() - Method in interface loci.formats.IFormatReader

Get the size of the Y dimension for the thumbnail.

getThumbSizeY() - Method in class loci.formats.ImageReader

getThumbSizeY() - Method in class loci.formats.in.LeicaSCNReader

getThumbSizeY() - Method in class loci.formats.in.MinimalTiffReader

getThumbSizeY() - Method in class loci.formats.ReaderWrapper

getThumbSizeY() - Method in class loci.tests.testng.Configuration

getTickColor() - Method in class loci.poi.hssf.record.TickRecord

Get the tick color field for the Tick record.

getTickMarkFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the tick mark frequency field for the CategorySeriesAxis record.

getTIFFCompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the TIFFCompressor that is currently set to be used by the ImageWriter to encode each image strip or tile, or null if none has been set.

getTiffData(int) - Method in class ome.xml.model.Pixels

getTiffDataCount(int) - Method in class loci.formats.meta.AggregateMetadata

getTiffDataCount(int) - Method in class loci.formats.meta.DummyMetadata

getTiffDataCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTiffDataCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTiffDataFirstC(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTiffDataFirstC(int, int) - Method in class loci.formats.meta.DummyMetadata

getTiffDataFirstC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTiffDataFirstC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTiffDataFirstT(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTiffDataFirstT(int, int) - Method in class loci.formats.meta.DummyMetadata

getTiffDataFirstT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTiffDataFirstT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTiffDataFirstZ(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTiffDataFirstZ(int, int) - Method in class loci.formats.meta.DummyMetadata

getTiffDataFirstZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTiffDataFirstZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTiffDataIFD(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTiffDataIFD(int, int) - Method in class loci.formats.meta.DummyMetadata

getTiffDataIFD(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTiffDataIFD(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTiffDataPlaneCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTiffDataPlaneCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getTiffDataPlaneCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTiffDataPlaneCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTIFFDecompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns the TIFFDecompressor that is currently set to be used by the ImageReader to decode each image strip or tile, or null if none has been set.

getTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Retrieves a TIFF field from the directory.

getTIFFField(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Retrieves all TIFF fields from the directory.

getTile(int, int) - Method in class com.sun.media.imageioimpl.common.SingleTileRenderedImage

Returns the image's Raster as tile (0, 0).

getTile(int, int, WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

getTile(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the coordinates of the current tile.

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTile(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the indexes of the current tile.

getTile(Point) - Method in interface jj2000.j2k.image.ImgData

Returns the indixes of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the indexes of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the coordinates of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.input.ImgReader

Returns the coordinates of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.Tiler

Returns the horizontal and vertical indexes of the current tile.

getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the indixes of the current tile.

getTile(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the indexes of the current tile.

getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the indexes of the current tile.

getTile(byte[], int, int, int, int) - Method in interface loci.formats.services.JPEGTurboService

getTile(int, int) - Method in interface loci.formats.services.JPEGTurboService

getTile(byte[], int, int, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl

getTile(int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl

getTile(IFD, byte[], int, int) - Method in class loci.formats.tiff.TiffParser

getTileAlternateMD5() - Method in class loci.tests.testng.Configuration

getTileCompHeight(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTileCompHeight(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the height in pixels of the specified tile-component for the given (tile-component) resolution level.

getTileCompHeight(int, int) - Method in interface jj2000.j2k.image.ImgData

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.Tiler

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the height in pixels of the specified tile-component for the given resolution level.

getTileCompHeight(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the height in pixels of the specified tile-component for the given resolution level.

getTileCompVal(int, int) - Method in class jj2000.j2k.ModuleSpec

Gets value of specified tile-component.

getTileCompWidth(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTileCompWidth(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the width in pixels of the specified tile-component for the given (tile-component) resolution level.

getTileCompWidth(int, int) - Method in interface jj2000.j2k.image.ImgData

Returns the width in pixels of the specified tile-component

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the width in pixels of the specified tile-component tile.

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the width in pixels of the specified tile-component

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the width in pixels of the specified tile-component.

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.Tiler

Returns the width in pixels of the specified tile-component.

getTileCompWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the width in pixels of the specified tile-component

getTileCompWidth(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the width in pixels of the specified tile-component for the given resolution level.

getTileCompWidth(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the width in pixels of the specified tile-component for the given resolution level.

getTileDef(int) - Method in class jj2000.j2k.ModuleSpec

Gets default value of the specified tile.

getTileGridXOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the upper-left pixel of tile (0, 0).

getTileGridXOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTileGridYOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the Y coordinate of the upper-left pixel of tile (0, 0).

getTileGridYOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTileHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the height of a tile.

getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall height of the current tile in pixels.

getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTileHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall height of the current tile in pixels, for the given resolution level.

getTileHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall height of the current tile in pixels, assuming there is no-tiling.

getTileHeight() - Method in class jj2000.j2k.image.Tiler

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall height of the current tile in pixels.

getTileHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall height of the current tile in pixels, for the given resolution level.

getTileHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall height of the current tile in pixels, for the given resolution level.

getTileIdx() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in interface jj2000.j2k.image.ImgData

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.image.input.ImgReader

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.image.Tiler

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the index of the current tile, relative to a standard scan-line order.

getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the index of the current tile, relative to a standard scan-line order.

getTileLength() - Method in class loci.formats.tiff.IFD

Returns the length of an image tile.

getTileMD5() - Method in class loci.tests.testng.Configuration

getTileOff(Point, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal and vertical offset of the upper-left corner of the current tile, in the specified component, relative to the canvas origin, in the component coordinates (not in the reference grid coordinates).

getTilePartULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTilePartULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal offset of tile partition

getTilePartULX() - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.Tiler

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal tile partition offset in the reference grid

getTilePartULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getTilePartULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical offset of tile partition

getTilePartULY() - Method in interface jj2000.j2k.image.ImgData

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical tile offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.Tiler

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical tile partition offset in the reference grid

getTileSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getTilesPerColumn() - Method in class loci.formats.tiff.IFD

Returns the number of image tiles per column.

getTilesPerRow() - Method in class loci.formats.tiff.IFD

Returns the number of image tiles per row.

getTileWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the width of a tile.

getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width of the current tile in pixels.

getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getTileWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall width of the current tile in pixels for the given (tile) resolution level.

getTileWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the width of the current tile in pixels, assuming there is no-tiling.

getTileWidth() - Method in class jj2000.j2k.image.Tiler

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall width of the current tile in pixels.

getTileWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall width of the current tile in pixels for the given resolution level.

getTileWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall width of the current tile in pixels, for the given resolution level.

getTileWidth() - Method in class loci.formats.tiff.IFD

Returns the width of an image tile.

getTilingOrigin(Point) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the tiling origin, referred to as '(Px,Py)' in the 'ImgData' interface.

getTilingOrigin(Point) - Method in class jj2000.j2k.image.Tiler

Returns the tiling origin, referred to as '(xt0siz,yt0siz)' in the codestream header (SIZ marker segment).

getTime(String, String) - Static method in class loci.common.DateTools

Converts a string date in the given format to a long timestamp (in Unix format: milliseconds since January 1, 1970).

getTime(String, String) - Static method in class ome.scifio.common.DateTools

Converts a string date in the given format to a long timestamp (in Unix format: milliseconds since January 1, 1970).

getTimeBinCount() - Method in class loci.formats.in.SDTReader

Gets the number of bins in the lifetime histogram.

getTimeIncrement() - Method in class loci.tests.testng.Configuration

getTimeIncrement() - Method in class ome.xml.model.Pixels

getTimepoint() - Method in class ome.xml.model.WellSample

getTimepoints() - Method in class loci.formats.in.ND2Handler

getTimestamp() - Static method in class loci.common.DateTools

Returns a timestamp for the current timezone in a human-readable locale-independent format ("YYYY-MM-DD HH:MM:SS")

getTimestamp() - Static method in class ome.scifio.common.DateTools

Returns a timestamp for the current timezone in a human-readable locale-independent format ("YYYY-MM-DD HH:MM:SS")

getTimestampAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getTimestampAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getTimestampAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getTimestampAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTimestampAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTimestampAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTimestampAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getTimestampAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTimestampAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTimestampAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getTimestampAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getTimestampAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTimestampAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTimestampAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getTimestampAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getTimestampAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getTimestampAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTimestampAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getTimestampAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getTimestampAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTimestampAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTimestampAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getTimestampAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getTimestampAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTimestampAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTimestampAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getTimestampAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getTimestampAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTimestampAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTimestampAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata

getTimestampAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata

getTimestampAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve

getTimestampAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTimestamps() - Method in class loci.formats.in.MetamorphHandler

getTitle() - Method in class loci.poi.hpsf.SummaryInformation

Returns the title (or null).

getToCell() - Method in class loci.poi.hssf.util.RangeAddress

getTopBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the top border

getTopBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the top border

getTopColGutter() - Method in class loci.poi.hssf.record.GutsRecord

get the size of the gutter that appears at the above the columns

getTopRow() - Method in class loci.poi.hssf.model.Sheet

getTopRow() - Method in class loci.poi.hssf.record.PaneRecord

Get the top row field for the Pane record.

getTopRow() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the top row visible in the window

getTopRow() - Method in class loci.poi.hssf.usermodel.HSSFSheet

The top row in the visible view when the sheet is first viewed after opening it in a viewer

getTotBitrate() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the overall target bitrate for the entire bit stream.

getTotNumLayers() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the total number of layers, according to the layer specification of this object and the overall target bitrate.

getTransform() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getTransform() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getTransform() - Method in class ome.xml.model.Shape

getTransmittance() - Method in class ome.xml.model.TransmittanceRange

getTransmittanceRange() - Method in class ome.xml.model.Filter

getTransmittanceRangeCutIn(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTransmittanceRangeCutIn(int, int) - Method in class loci.formats.meta.DummyMetadata

getTransmittanceRangeCutIn(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTransmittanceRangeCutIn(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTransmittanceRangeCutInTolerance(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTransmittanceRangeCutInTolerance(int, int) - Method in class loci.formats.meta.DummyMetadata

getTransmittanceRangeCutInTolerance(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTransmittanceRangeCutInTolerance(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTransmittanceRangeCutOut(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTransmittanceRangeCutOut(int, int) - Method in class loci.formats.meta.DummyMetadata

getTransmittanceRangeCutOut(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTransmittanceRangeCutOut(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTransmittanceRangeCutOutTolerance(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTransmittanceRangeCutOutTolerance(int, int) - Method in class loci.formats.meta.DummyMetadata

getTransmittanceRangeCutOutTolerance(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTransmittanceRangeCutOutTolerance(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTransmittanceRangeTransmittance(int, int) - Method in class loci.formats.meta.AggregateMetadata

getTransmittanceRangeTransmittance(int, int) - Method in class loci.formats.meta.DummyMetadata

getTransmittanceRangeTransmittance(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getTransmittanceRangeTransmittance(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class loci.formats.gui.XMLCellRenderer

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.AQUA

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLACK

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BROWN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.CORAL

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GOLD

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIME

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.MAROON

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PINK

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PLUM

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.RED

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ROSE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TAN

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TEAL

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.WHITE

getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW

getTripletHash() - Static method in class loci.poi.hssf.util.HSSFColor

this function returns all colors in a hastable.

getTStep(int) - Method in class loci.plugins.in.ImporterOptions

getTStep(int) - Method in class loci.plugins.in.ImportProcess

getTuneable() - Method in class ome.xml.model.Laser

getType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the type of the data stored in the field.

getType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box type.

getType() - Method in class loci.formats.cache.CacheEvent

Gets the type of cache update.

getType() - Method in class loci.formats.gui.TwoChannelColorSpace

getType() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the type associated with this Sequence.

getType() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's Type value.

getType() - Method in class loci.poi.ddf.EscherPropertyMetaData

getType() - Method in class loci.poi.hpsf.Property

Returns the property's type.

getType() - Method in class loci.poi.hssf.record.BOFRecord

type of object this marks

getType() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getType() - Method in class loci.poi.hssf.record.formula.AddPtg

getType() - Method in class loci.poi.hssf.record.formula.AttrPtg

getType() - Method in class loci.poi.hssf.record.formula.ConcatPtg

getType() - Method in class loci.poi.hssf.record.formula.DividePtg

getType() - Method in class loci.poi.hssf.record.formula.EqualPtg

getType() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

getType() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the type of PTG for Greater Than

getType() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

getType() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

getType() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the type of PTG for Less Than

getType() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getType() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

getType() - Method in class loci.poi.hssf.record.formula.OperationPtg

getType() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getType() - Method in class loci.poi.hssf.record.formula.PercentPtg

getType() - Method in class loci.poi.hssf.record.formula.PowerPtg

getType() - Method in class loci.poi.hssf.record.formula.RangePtg

getType() - Method in class loci.poi.hssf.record.formula.SubtractPtg

getType() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getType() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getType() - Method in class loci.poi.hssf.record.formula.UnionPtg

getType() - Method in class loci.poi.hssf.record.LegendRecord

Get the type field for the Legend record.

getType() - Method in class loci.poi.hssf.record.StyleRecord

get the type of the style (builtin or user-defined)

getType() - Method in class mdbtools.dbengine.sql.Join

getType() - Method in class ome.metakit.Column

Retrieve the Class corresponding to the column's type.

getType() - Method in class ome.xml.model.Arc

getType() - Method in class ome.xml.model.Detector

getType() - Method in class ome.xml.model.Experiment

getType() - Method in class ome.xml.model.Filament

getType() - Method in class ome.xml.model.Filter

getType() - Method in class ome.xml.model.Laser

getType() - Method in class ome.xml.model.MicrobeamManipulation

getType() - Method in class ome.xml.model.Microscope

getType() - Method in class ome.xml.model.Pixels

getType() - Method in class ome.xml.model.Screen

getType() - Method in class ome.xml.model.Well

getTypeByName(String) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the data type constant corresponding to the supplied data type name.

getTypeByName(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the type String based on the provided name.

getTypeInt(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Converts the box type from integer to string.

getTypeName(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the name of the supplied data type constant.

getTypeOffset() - Method in class loci.poi.hssf.usermodel.HSSFFont

get normal,super or subscript.

getTypes() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the channel types.

getTypeString(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Converts the box type from integer to string.

getTypeString() - Method in class ome.metakit.Column

Retrieve a string representation of the type.

getUID() - Method in class loci.poi.ddf.EscherBitmapBlip

getUid() - Method in class loci.poi.ddf.EscherBSERecord

16 byte MD4 checksum.

getUID() - Method in class loci.poi.ddf.EscherMetafileBlip

getUID() - Method in class loci.poi.ddf.EscherPictBlip

getUInt(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an unsigned int value from a byte array

getUInt(byte[]) - Static method in class loci.poi.util.LittleEndian

get an unsigned int value from a byte array

getULong(byte[], int) - Static method in class loci.poi.util.LittleEndian

Gets an unsigned int value (8 bytes) from a byte array.

getUncompressedSize() - Method in class loci.poi.ddf.EscherMetafileBlip

getUncompressedSize() - Method in class loci.poi.ddf.EscherPictBlip

getUnderline() - Method in class loci.poi.hssf.record.FontRecord

get the type of underlining for the font

getUnderline() - Method in class loci.poi.hssf.usermodel.HSSFFont

get type of text underlining to use

getUnderlyingReaders() - Method in class loci.formats.FileStitcher

getUnderlyingReaders() - Method in class loci.formats.FormatReader

getUnderlyingReaders() - Method in interface loci.formats.IFormatReader

Retrieves all underlying readers.

getUnderlyingReaders() - Method in class loci.formats.ImageReader

getUnderlyingReaders() - Method in class loci.formats.ReaderWrapper

getUndocumented() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the undocumented field for the SeriesText record.

getUngroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions

getUnicodeFlag() - Method in class loci.poi.hssf.record.FormatRecord

get whether the string is unicode

getUnion() - Method in class ome.xml.model.ROI

getUnion() - Method in class ome.xml.model.Shape

getUnits() - Method in class loci.poi.hssf.record.UnitsRecord

Get the units field for the Units record.

getUniverse() - Method in class loci.formats.gui.LegacyQTTools

Gets QuickTime for Java reflected universe.

getUnknown() - Method in class loci.poi.hssf.record.FileSharingRecord

getUnknownColorspace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the UnknowColorspace flag.

getUnpackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Returns the binary data unpacked into an array of bytes.

getUnsignedByte(byte[], int) - Static method in class loci.poi.util.LittleEndian

get the unsigned value of a byte.

getUnsignedByte(byte[]) - Static method in class loci.poi.util.LittleEndian

get the unsigned value of a byte.

getUnused() - Method in class loci.poi.hssf.record.NameRecord

gets the index to extern sheet

getUnused2() - Method in class loci.poi.ddf.EscherBSERecord

getUnused3() - Method in class loci.poi.ddf.EscherBSERecord

getUpgradeCheckInfo() - Method in class loci.plugins.in.ImporterOptions

getURL() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the URL data element.

getUsage() - Method in class loci.poi.ddf.EscherBSERecord

Defines the way this blip is used.

getUsedFile(Double, String[]) - Method in class loci.plugins.macro.LociFunctions

getUsedFileCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getUsedFiles() - Method in class loci.formats.FileStitcher

getUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getUsedFiles() - Method in class loci.formats.FormatReader

getUsedFiles(boolean) - Method in class loci.formats.FormatReader

getUsedFiles() - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open this dataset.

getUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open this dataset.

getUsedFiles() - Method in class loci.formats.ImageReader

getUsedFiles(boolean) - Method in class loci.formats.ImageReader

getUsedFiles(boolean) - Method in class loci.formats.in.InveonReader

getUsedFiles(boolean) - Method in class loci.formats.in.MetamorphTiffReader

getUsedFiles(boolean) - Method in class loci.formats.in.UnisokuReader

getUsedFiles() - Method in class loci.formats.ReaderWrapper

getUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getUsedMemory() - Static method in class loci.tests.testng.TestTools

Gets the quantity of used memory, in MB.

getUsePage() - Method in class loci.poi.hssf.record.PrintSetupRecord

getUsePage() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the use page numbers.

getUsername() - Method in class loci.poi.hssf.record.FileSharingRecord

getUsername() - Method in class loci.poi.hssf.record.WriteAccessRecord

get the username for the user that created the report.

getUserName() - Method in class ome.xml.model.Experimenter

getUsernameLength() - Method in class loci.poi.hssf.record.FileSharingRecord

getUShort(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an unsigned short value from a byte array

getUShort(byte[]) - Static method in class loci.poi.util.LittleEndian

get an unsigned short value from the beginning of a byte array

getUUID() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Returns the UUID of this box.

getUUID() - Method in class loci.formats.meta.AggregateMetadata

Gets the UUID associated with this collection of metadata.

getUUID() - Method in class loci.formats.meta.DummyMetadata

Gets the UUID associated with this collection of metadata.

getUUID() - Method in interface loci.formats.meta.MetadataRetrieve

Gets the UUID associated with this collection of metadata.

getUUID() - Method in class loci.formats.ome.OMEXMLMetadataImpl

Gets the UUID associated with this collection of metadata.

getUUID() - Method in class ome.xml.model.BinaryOnly

getUUID() - Method in class ome.xml.model.OME

getUUID() - Method in class ome.xml.model.TiffData

getUUIDFileName(int, int) - Method in class loci.formats.meta.AggregateMetadata

getUUIDFileName(int, int) - Method in class loci.formats.meta.DummyMetadata

getUUIDFileName(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getUUIDFileName(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getUUIDValue(int, int) - Method in class loci.formats.meta.AggregateMetadata

getUUIDValue(int, int) - Method in class loci.formats.meta.DummyMetadata

getUUIDValue(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getUUIDValue(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getValidSettings() - Method in class loci.poi.hssf.record.PrintSetupRecord

getValidSettings() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the valid settings.

getValue(int, int) - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the current value of the specified element in the tag tree.

getValue() - Method in class loci.formats.in.BaseZeissReader.Tag

getValue(String) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the value of the given Key, beneath this Frame.

getValue() - Method in class loci.plugins.prefs.BooleanOption

Gets the current value of the option.

getValue() - Method in class loci.plugins.prefs.DoubleOption

Gets the current value of the option.

getValue(String) - Method in class loci.plugins.prefs.OptionsList

Gets the value of the string option with the given key.

getValue() - Method in class loci.plugins.prefs.StringOption

Gets the current value of the option.

getValue() - Method in class loci.poi.hpsf.Property

Returns the property's value.

getValue() - Method in exception loci.poi.hpsf.VariantTypeException

Returns the value who's variant type caused the problem.

getValue() - Method in class loci.poi.hssf.record.formula.BoolPtg

getValue() - Method in class loci.poi.hssf.record.formula.IntPtg

getValue() - Method in class loci.poi.hssf.record.formula.NumberPtg

getValue() - Method in class loci.poi.hssf.record.formula.StringPtg

getValue() - Method in class loci.poi.hssf.record.FormulaRecord

get the calculated value of the formula

getValue() - Method in class loci.poi.hssf.record.LabelRecord

get the value

getValue() - Method in class loci.poi.hssf.record.NumberRecord

get the value for the cell

getValue(int) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, appropriately shifted right.

getValue() - Method in class ome.xml.model.BooleanAnnotation

getValue() - Method in class ome.xml.model.CommentAnnotation

getValue() - Method in class ome.xml.model.DoubleAnnotation

getValue() - Method in enum ome.xml.model.enums.AcquisitionMode

getValue() - Method in enum ome.xml.model.enums.ArcType

getValue() - Method in enum ome.xml.model.enums.Binning

getValue() - Method in enum ome.xml.model.enums.Compression

getValue() - Method in enum ome.xml.model.enums.ContrastMethod

getValue() - Method in enum ome.xml.model.enums.Correction

getValue() - Method in enum ome.xml.model.enums.DetectorType

getValue() - Method in enum ome.xml.model.enums.DimensionOrder

getValue() - Method in enum ome.xml.model.enums.ExperimentType

getValue() - Method in enum ome.xml.model.enums.FilamentType

getValue() - Method in enum ome.xml.model.enums.FillRule

getValue() - Method in enum ome.xml.model.enums.FilterType

getValue() - Method in enum ome.xml.model.enums.FontFamily

getValue() - Method in enum ome.xml.model.enums.FontStyle

getValue() - Method in enum ome.xml.model.enums.IlluminationType

getValue() - Method in enum ome.xml.model.enums.Immersion

getValue() - Method in enum ome.xml.model.enums.LaserMedium

getValue() - Method in enum ome.xml.model.enums.LaserType

getValue() - Method in enum ome.xml.model.enums.LineCap

getValue() - Method in enum ome.xml.model.enums.Marker

getValue() - Method in enum ome.xml.model.enums.Medium

getValue() - Method in enum ome.xml.model.enums.MicrobeamManipulationType

getValue() - Method in enum ome.xml.model.enums.MicroscopeType

getValue() - Method in enum ome.xml.model.enums.NamingConvention

getValue() - Method in enum ome.xml.model.enums.PixelType

getValue() - Method in enum ome.xml.model.enums.Pulse

getValue() - Method in class ome.xml.model.LongAnnotation

getValue() - Method in class ome.xml.model.primitives.PrimitiveType

Retrieves the concrete delegate value.

getValue() - Method in class ome.xml.model.TagAnnotation

getValue() - Method in class ome.xml.model.TermAnnotation

getValue() - Method in class ome.xml.model.TimestampAnnotation

getValue() - Method in class ome.xml.model.UUID

getValue() - Method in class ome.xml.model.XMLAnnotation

getValueAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a String containing a human-readable version of the data item.

getValueCount() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's ValueCount value.

getValueForKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation

Return just the value (i.e.

getValueList() - Method in class ome.metakit.ColumnMap

Return the list of values in this map's column.

getValueName(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the mnemonic name associated with a particular value that this tag's data may take on, or null if no name is present.

getValueOffset() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's ValueOffset value.

getValues() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets a read-only map of Frame key/value pairs.

getValues() - Method in class ome.metakit.ColumnMap

Return an array of the values in this map's column.

getValuesDataType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the values data type field for the Series record.

getVar(String) - Method in class loci.common.ReflectedUniverse

Returns the value of a variable or field in the universe.

getVar(String) - Method in class ome.scifio.common.ReflectedUniverse

Returns the value of a variable or field in the universe.

getVariableAttributes(String) - Method in interface loci.formats.services.NetCDFService

Retrieves all of a variable's attributes.

getVariableAttributes(String) - Method in class loci.formats.services.NetCDFServiceImpl

getVariableList() - Method in interface loci.formats.services.NetCDFService

Retrieves an exhaustive list of the HDF paths for all variables in the HDF document.

getVariableList() - Method in class loci.formats.services.NetCDFServiceImpl

getVariableValue(String) - Method in interface loci.formats.services.NetCDFService

Retrieves a variable's value.

getVariableValue(String) - Method in class loci.formats.services.NetCDFServiceImpl

getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getVariantLength(long) - Static method in class loci.poi.hpsf.Variant

Returns a variant type's length.

getVariantName(long) - Static method in class loci.poi.hpsf.Variant

Returns the variant type name associated with a variant type number.

getVariantType() - Method in exception loci.poi.hpsf.VariantTypeException

Returns the offending variant type.

getVaryDisplayPattern() - Method in class loci.poi.hssf.record.ChartFormatRecord

getVCenter() - Method in class loci.poi.hssf.record.VCenterRecord

get whether to center vertically or not

getVendor() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return a vendor string for the package.

getVersion() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Deprecated.

getVersion() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return a version string for the package.

getVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the Version data element.

getVersion() - Method in class loci.poi.hssf.record.BOFRecord

Version number - for BIFF8 should be 0x06

getVersionNumber(String[]) - Method in class loci.plugins.macro.LociFunctions

getVertAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the vertical analysis wavelet filters used in each level, for the specified tile-component.

getVertAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the vertical analysis wavelet filters used in each level, for the specified component and tile.

getVerticalAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the vertical alignment of text in the cell

getVerticalAlignment() - Method in class loci.poi.hssf.record.TextRecord

Get the vertical alignment field for the Text record.

getVerticalAlignment() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of vertical alignment for the cell

getVerticalHold() - Method in class loci.poi.hssf.record.WindowOneRecord

get the vertical position of the window (in 1/20ths of a point)

getVerticallyCenter(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determine whether printed output for this sheet will be vertically centered.

getVerticalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Return the vertical resolution.

getVerticalScale() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Get the verticalScale field for the PlotGrowth record.

getVerticalSplitLeftColumn() - Method in class loci.poi.hssf.util.PaneInformation

For a vertical split returns the left column in the RIGHT pane.

getVerticalSplitPosition() - Method in class loci.poi.hssf.util.PaneInformation

Returns the vertical position of the split.

getVerticalTextAlignment() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getVerWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

This function returns the vertical wavelet filter relevant to this subband

getVerWFilter() - Method in class jj2000.j2k.wavelet.Subband

This function returns the vertical wavelet filter relevant to this subband

getVerWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

This function returns the vertical wavelet filter relevant to this subband

getVFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the vertical analysis filters to be used in component 'n' and tile 't'.

getVFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the vertical analysis filters to be used in component 'n' and tile 't'.

getViewableArray() - Method in interface loci.poi.poifs.dev.POIFSViewable

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.DocumentNode

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Get an array of objects, some of which may implement POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.property.Property

Get an array of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in interface loci.poi.poifs.dev.POIFSViewable

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.DocumentNode

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Get an Iterator of objects, some of which may implement POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.property.Property

Get an Iterator of objects, some of which may implement POIFSViewable

getVirtualInfo() - Method in class loci.plugins.in.ImporterOptions

getVirtualReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getVisible() - Method in class ome.xml.model.Shape

getVoltage() - Method in class loci.formats.in.ND2Handler

getVoltage() - Method in class ome.xml.model.Detector

getVoltage() - Method in class ome.xml.model.DetectorSettings

getVoxSzX() - Method in interface loci.formats.services.WlzService

Gets voxel width.

getVoxSzX() - Method in class loci.formats.services.WlzServiceImpl

getVoxSzY() - Method in interface loci.formats.services.WlzService

Gets voxel height.

getVoxSzY() - Method in class loci.formats.services.WlzServiceImpl

getVoxSzZ() - Method in interface loci.formats.services.WlzService

Gets voxel depth.

getVoxSzZ() - Method in class loci.formats.services.WlzServiceImpl

getVResolution() - Method in class loci.poi.hssf.record.PrintSetupRecord

getVResolution() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the vertical resolution.

getWaitTime() - Method in class loci.formats.in.PrairieMetadata

Gets the waitTime recorded in the configuration.

getWavelength(Integer) - Static method in class loci.formats.FormatTools

getWavelength(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getWavelength() - Method in class ome.xml.model.Laser

getWavelength() - Method in class ome.xml.model.LightSourceSettings

getWavelengths() - Method in class loci.formats.in.MetamorphHandler

getWeight() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the weight field for the LineFormat record.

getWell(int) - Method in class ome.xml.model.Plate

getWell() - Method in class ome.xml.model.WellSample

getWellAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getWellAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellColor(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellColor(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellColumn(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellColumn(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellColumn(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellColumn(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellCount(int) - Method in class loci.formats.meta.AggregateMetadata

getWellCount(int) - Method in class loci.formats.meta.DummyMetadata

getWellCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellExternalDescription(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellExternalDescription(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellExternalDescription(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellExternalDescription(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellExternalIdentifier(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellExternalIdentifier(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellExternalIdentifier(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellExternalIdentifier(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellID(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellID(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellOriginX() - Method in class ome.xml.model.Plate

getWellOriginY() - Method in class ome.xml.model.Plate

getWellReagentRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellReagentRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellReagentRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellReagentRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellRow(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellRow(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellRow(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellRow(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSample(int) - Method in class ome.xml.model.Well

getWellSampleAnnotationRef(int, int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSampleAnnotationRef(int, int, int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSampleAnnotationRef(int, int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSampleAnnotationRef(int, int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSampleAnnotationRefCount(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSampleAnnotationRefCount(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSampleAnnotationRefCount(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSampleAnnotationRefCount(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSampleCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSampleCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSampleCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSampleCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSampleID(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSampleID(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSampleID(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSampleID(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSampleImageRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSampleImageRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSampleImageRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSampleImageRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSampleIndex(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSampleIndex(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSampleIndex(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSampleIndex(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSamplePositionX(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSamplePositionX(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSamplePositionX(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSamplePositionX(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSamplePositionY(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSamplePositionY(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSamplePositionY(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSamplePositionY(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSampleRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSampleRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSampleRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSampleRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellSampleTimepoint(int, int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellSampleTimepoint(int, int, int) - Method in class loci.formats.meta.DummyMetadata

getWellSampleTimepoint(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellSampleTimepoint(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWellType(int, int) - Method in class loci.formats.meta.AggregateMetadata

getWellType(int, int) - Method in class loci.formats.meta.DummyMetadata

getWellType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getWellType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getWhere() - Method in class mdbtools.dbengine.sql.Select

getWidgets() - Method in class loci.plugins.config.FlexWidgets

getWidgets() - Method in interface loci.plugins.config.IFormatWidgets

getWidgets() - Method in class loci.plugins.config.ND2Widgets

getWidgets() - Method in class loci.plugins.config.PictWidgets

getWidgets() - Method in class loci.plugins.config.QTWidgets

getWidgets() - Method in class loci.plugins.config.SDTWidgets

getWidgets() - Method in class loci.plugins.config.TiffDelegateWidgets

getWidth() - Method in class com.luratech.lwf.lwfDecoder

getWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the width of the image.

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the width of the image.

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getWidth() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getWidth() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the number of leafs along the horizontal direction.

getWidth() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Returns the number of leafs along the horizontal direction.

getWidth() - Method in class loci.formats.codec.JPEGTileDecoder

getWidth(int) - Method in class loci.formats.in.LegacyND2Reader

getWidth() - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.getWidth()

getWidth() - Method in class loci.formats.services.LuraWaveServiceImpl

getWidth(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack

getWidth() - Method in class loci.plugins.util.BFVirtualStack

getWidth() - Method in class loci.plugins.util.RecordedImageProcessor

getWidth() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the width of the metafile in EMU's (English Metric Units).

getWidth() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the width field for the AxisParent record.

getWidth() - Method in class loci.poi.hssf.record.ChartFormatRecord

getWidth() - Method in class loci.poi.hssf.record.ChartRecord

Get the width field for the Chart record.

getWidth() - Method in class loci.poi.hssf.record.TextRecord

Get the width field for the Text record.

getWidth() - Method in class loci.poi.hssf.record.WindowOneRecord

get the width of the window

getWidth() - Method in class loci.poi.hssf.util.RangeAddress

getWidth() - Method in class ome.xml.model.Mask

getWidth() - Method in class ome.xml.model.Rectangle

getWindowing() - Method in class loci.poi.hssf.record.DateWindow1904Record

gets whether or not to use 1904 date windowing (which means you'll be screwed in 2004)

getWindowlessInfo() - Method in class loci.plugins.in.ImporterOptions

getWindowOne() - Method in class loci.poi.hssf.model.Workbook

getWlzOrgLabelName() - Method in interface loci.formats.services.WlzService

Gets the text string used for the Woolz origin label.

getWlzOrgLabelName() - Method in class loci.formats.services.WlzServiceImpl

getWordCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the word count or 0 if the SummaryInformation does not contain a word count.

getWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

getWorkingDistance() - Method in class ome.xml.model.Objective

getWrappedStream() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

getWrapText() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to wrap the text in the cell

getWrapText() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the text should be wrapped

getWriteAccess() - Method in class loci.poi.hssf.model.Workbook

getWriteCodeStreamOnly() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets writeCodeStreamOnly.

getWriteProtect() - Method in class loci.poi.hssf.model.Workbook

getWriter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the current ImageWriter.

getWriter(String) - Method in class loci.formats.ImageWriter

Gets the writer used to save the given file.

getWriter() - Method in class loci.formats.ImageWriter

Gets the writer used to save the current file.

getWriter(Class<? extends IFormatWriter>) - Method in class loci.formats.ImageWriter

Gets the file format writer instance matching the given class.

getWriter() - Method in class loci.formats.WriterWrapper

Gets the wrapped writer.

getWriterList() - Method in class loci.tests.testng.FormatWriterTest

getWriters() - Method in class loci.formats.ImageWriter

Gets all constituent file format writers.

getWSBool1() - Method in class loci.poi.hssf.record.WSBoolRecord

get first byte (see bit getters)

getWSBool2() - Method in class loci.poi.hssf.record.WSBoolRecord

get the second byte (see bit getters)

getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the data type used by the filters in this object, as defined in the 'DataBlk' interface for specified tile-component.

getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the data type used by the filters in this object, as defined in the 'DataBlk' interface for specified tile-component.

getWTDataType() - Method in class jj2000.j2k.wavelet.WTFilterSpec

Returns the data type used by the filters in this object, as defined in the 'DataBlk' interface.

getX() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the x field for the AxisParent record.

getX() - Method in class loci.poi.hssf.record.ChartRecord

Get the x field for the Chart record.

getX() - Method in class loci.poi.hssf.record.PaneRecord

Get the x field for the Pane record.

getX() - Method in class loci.poi.hssf.record.TextRecord

Get the x field for the Text record.

getX() - Method in class ome.xml.model.Ellipse

getX() - Method in class ome.xml.model.Label

getX() - Method in class ome.xml.model.Mask

getX() - Method in class ome.xml.model.Point

getX() - Method in class ome.xml.model.Rectangle

getX() - Method in class ome.xml.model.StageLabel

getX1() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The top left x coordinate of this group.

getX1() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The top left x coordinate of this group.

getX1() - Method in class ome.xml.model.Line

getX2() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The bottom right x coordinate of this group.

getX2() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The bottom right x coordinate of this group.

getX2() - Method in class ome.xml.model.Line

getXAxisUpperLeft() - Method in class loci.poi.hssf.record.LegendRecord

Get the x axis upper left field for the Legend record.

getXBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the x Basis field for the FontBasis record.

getXBATChainOffset(int) - Static method in class loci.poi.poifs.storage.BATBlock

getXBATCount() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getXBATIndex() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getXFAt(int) - Method in class loci.poi.hssf.record.MulBlankRecord

returns the xf index for column (coffset = column - field_2_first_col)

getXFAt(int) - Method in class loci.poi.hssf.record.MulRKRecord

returns the xf index for column (coffset = column - field_2_first_col)

getXFields() - Method in class loci.formats.in.ND2Handler

getXFIndex() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getXFIndex() - Method in class loci.poi.hssf.record.BlankRecord

get the index of the extended format record to style this cell with

getXFIndex() - Method in class loci.poi.hssf.record.BoolErrRecord

get the index to the ExtendedFormat

getXFIndex() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

getXFIndex() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the columns' default format info

getXFIndex() - Method in class loci.poi.hssf.record.FormulaRecord

getXFIndex() - Method in class loci.poi.hssf.record.LabelRecord

getXFIndex() - Method in class loci.poi.hssf.record.LabelSSTRecord

get the index to the extended format record

getXFIndex() - Method in class loci.poi.hssf.record.NumberRecord

get the index to the ExtendedFormat

getXFIndex() - Method in class loci.poi.hssf.record.RKRecord

getXFIndex() - Method in class loci.poi.hssf.record.RowRecord

if the row is formatted then this is the index to the extended format record

getXFIndex() - Method in class loci.poi.hssf.record.StyleRecord

get the actual index of the style extended format record

getXFIndexForColAt(short) - Method in class loci.poi.hssf.model.Sheet

get the index to the ExtendedFormatRecord "associated" with the column at specified 0-based index.

getXfpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getXFType() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether the cell is a cell or style XFRecord

getXML(Document) - Static method in class loci.common.xml.XMLTools

Converts the given DOM back to a string.

getXML() - Method in class loci.formats.tools.EditTiffG

getXML(Document) - Static method in class ome.scifio.xml.XMLTools

Converts the given DOM back to a string.

getXMLAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getXMLAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata

getXMLAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata

getXMLAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve

getXMLAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getXMLAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata

getXMLAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata

getXMLAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve

getXMLAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getXMLAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata

getXMLAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata

getXMLAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve

getXMLAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getXMLAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata

getXMLAnnotationCount() - Method in class loci.formats.meta.DummyMetadata

getXMLAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve

getXMLAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl

getXMLAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata

getXMLAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata

getXMLAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve

getXMLAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getXMLAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata

getXMLAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata

getXMLAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve

getXMLAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getXMLAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata

getXMLAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata

getXMLAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve

getXMLAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getXMLAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata

getXMLAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata

getXMLAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve

getXMLAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl

getXmlFooter() - Static method in class loci.formats.tools.PrintFormatTable

getXmlFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getXmlHeader() - Static method in class loci.formats.tools.PrintFormatTable

getXPoints() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getXPosition() - Method in class loci.poi.hssf.record.ChartFormatRecord

getXPosition(String) - Method in class loci.poi.hssf.util.RangeAddress

getXPositions() - Method in class loci.formats.in.ND2Handler

getXResolution() - Method in class loci.formats.tiff.IFD

Retrieve the X resolution (TIFF tag XResolution) from this IFD.

getXSize() - Method in class loci.poi.hssf.record.LegendRecord

Get the x size field for the Legend record.

getY() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the y field for the AxisParent record.

getY() - Method in class loci.poi.hssf.record.ChartRecord

Get the y field for the Chart record.

getY() - Method in class loci.poi.hssf.record.PaneRecord

Get the y field for the Pane record.

getY() - Method in class loci.poi.hssf.record.TextRecord

Get the y field for the Text record.

getY() - Method in class ome.xml.model.Ellipse

getY() - Method in class ome.xml.model.Label

getY() - Method in class ome.xml.model.Mask

getY() - Method in class ome.xml.model.Point

getY() - Method in class ome.xml.model.Rectangle

getY() - Method in class ome.xml.model.StageLabel

getY1() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The top left y coordinate of this group.

getY1() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The top left y coordinate of this group.

getY1() - Method in class ome.xml.model.Line

getY2() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The bottom right y coordinate of this group.

getY2() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The bottom right y coordinate of this group.

getY2() - Method in class ome.xml.model.Line

getYAxisUpperLeft() - Method in class loci.poi.hssf.record.LegendRecord

Get the y axis upper left field for the Legend record.

getYBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the y Basis field for the FontBasis record.

getYPoints() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getYPosition() - Method in class loci.poi.hssf.record.ChartFormatRecord

getYPosition(String) - Method in class loci.poi.hssf.util.RangeAddress

getYPositions() - Method in class loci.formats.in.ND2Handler

getYResolution() - Method in class loci.formats.tiff.IFD

Retrieve the Y resolution (TIFF tag YResolution) from this IFD.

getYSize() - Method in class loci.poi.hssf.record.LegendRecord

Get the y size field for the Legend record.

getZ() - Method in class loci.formats.gui.ImageViewer

Gets the Z value of the currently displayed image.

getZ() - Method in class ome.xml.model.StageLabel

getZBegin(int) - Method in class loci.plugins.in.ImporterOptions

getZBegin(int) - Method in class loci.plugins.in.ImportProcess

getZCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getZCTCoords(int) - Method in class loci.formats.ChannelMerger

getZCTCoords(int) - Method in class loci.formats.ChannelSeparator

getZCTCoords(int) - Method in class loci.formats.DimensionSwapper

getZCTCoords(int) - Method in class loci.formats.FileStitcher

getZCTCoords(int) - Method in class loci.formats.FormatReader

getZCTCoords(IFormatReader, int) - Static method in class loci.formats.FormatTools

Gets the Z, C and T coordinates corresponding to the given rasterized index value.

getZCTCoords(String, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the Z, C and T coordinates corresponding to the given rasterized index value.

getZCTCoords(int) - Method in interface loci.formats.IFormatReader

Gets the Z, C and T coordinates corresponding to the given rasterized index value.

getZCTCoords(int) - Method in class loci.formats.ImageReader

getZCTCoords(int) - Method in class loci.formats.ReaderWrapper

getZCTCoords(Double, Double[], Double[], Double[]) - Method in class loci.plugins.macro.LociFunctions

getZEnd(int) - Method in class loci.plugins.in.ImporterOptions

getZEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getZero1() - Method in class loci.poi.hssf.record.TickRecord

Get the zero 1 field for the Tick record.

getZero2() - Method in class loci.poi.hssf.record.TickRecord

Get the zero 2 field for the Tick record.

getZero3() - Method in class loci.poi.hssf.record.TickRecord

Get the zero 3 field for the Tick record.

getZeroHeight() - Method in class loci.poi.hssf.record.RowRecord

get whether or not to display this row with 0 height

getZeroHeight() - Method in class loci.poi.hssf.usermodel.HSSFRow

get whether or not to display this row with 0 height

getZoom() - Method in class loci.formats.in.MetamorphHandler

getZoom() - Method in class ome.xml.model.Detector

getZoom() - Method in class ome.xml.model.DetectorSettings

getZPositions() - Method in class loci.formats.in.MetamorphHandler

getZPositions() - Method in class loci.formats.in.ND2Handler

getZSections() - Method in class loci.formats.in.ND2Handler

getZSlices(int) - Method in class loci.formats.in.LegacyND2Reader

getZStep(int) - Method in class loci.plugins.in.ImporterOptions

getZStep(int) - Method in class loci.plugins.in.ImportProcess

GIF_MAGIC_STRING - Static variable in class loci.formats.in.GIFReader

GIFImageMetadata - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

GIFImageMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

GIFImageMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources

GIFImageWriter - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageWriter(GIFImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

GIFImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.gif

GIFImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

GIFReader - Class in loci.formats.in

GIFReader is the file format reader for Graphics Interchange Format (GIF) files.

GIFReader() - Constructor for class loci.formats.in.GIFReader

Constructs a new GIF reader.

GIFStreamMetadata - Class in com.sun.media.imageioimpl.plugins.gif

GIFStreamMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

GIFStreamMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

GIFStreamMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif

GIFStreamMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif

GIFStreamMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources

globalColorTable - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

GPS_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

An array of bytes containing the values {'2', '2', '0', '0'} to be used with the "GPSVersionID" tag to indicate GPS version 2.2.

GRAPHICS_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the graphics domain.

GRAY_RESPONSE_CURVE - Static variable in class loci.formats.tiff.IFD

GRAY_RESPONSE_UNIT - Static variable in class loci.formats.tiff.IFD

GRAY_RESPONSE_UNIT_HUNDRED_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_HUNDREDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_TEN_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_TENTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GREATER_THAN - Static variable in class mdbtools.dbengine.sql.Equation

GREATER_THAN_OR_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation

GreaterEqualPtg - Class in loci.poi.hssf.record.formula

PTG class to implement greater or equal to

GreaterEqualPtg() - Constructor for class loci.poi.hssf.record.formula.GreaterEqualPtg

Creates new GreaterEqualPtg

GreaterEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.GreaterEqualPtg

GreaterThanPtg - Class in loci.poi.hssf.record.formula

Greater than operator PTG ">"

GreaterThanPtg() - Constructor for class loci.poi.hssf.record.formula.GreaterThanPtg

Constructor.

GreaterThanPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.GreaterThanPtg

Constructor.

green - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

green - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

greenMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

greenX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

greenY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

greenZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

gridset - Variable in class loci.poi.hssf.model.Sheet

GridsetRecord - Class in loci.poi.hssf.record

Title: Gridset Record.

GridsetRecord() - Constructor for class loci.poi.hssf.record.GridsetRecord

GridsetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GridsetRecord

Constructs a GridSet record and sets its fields appropriately.

group - Variable in class loci.formats.FormatReader

Whether or not to group multi-file formats.

groupColumn(short, short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Create an outline for the provided column range.

groupColumnRange(short, short, boolean) - Method in class loci.poi.hssf.model.Sheet

Creates an outline group for the specified columns.

groupColumnRange(short, short, boolean) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Creates an outline group for the specified columns.

groupFilesBox - Variable in class loci.plugins.in.MainDialog

GroupMarkerSubRecord - Class in loci.poi.hssf.record

The group marker record is used as a position holder for groups.

GroupMarkerSubRecord() - Constructor for class loci.poi.hssf.record.GroupMarkerSubRecord

GroupMarkerSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GroupMarkerSubRecord

Constructs a group marker record and sets its fields appropriately.

groupRow(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

groupRowRange(int, int, boolean) - Method in class loci.poi.hssf.model.Sheet

GROUPSHAPE__1DADJUSTMENT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__BEHINDDOCUMENT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__DESCRIPTION - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__EDITEDWRAP - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__HIDDEN - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__HYPERLINK - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__ISBUTTON - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__ONDBLCLICKNOTIFY - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__PRINT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__REGROUPID - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__SHAPENAME - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPDISTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPDISTLEFT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPDISTRIGHT - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPDISTTOP - Static variable in class loci.poi.ddf.EscherProperties

GROUPSHAPE__WRAPPOLYGONVERTICES - Static variable in class loci.poi.ddf.EscherProperties

GuardBitsSpec - Class in jj2000.j2k.quantization

This class extends ModuleSpec class in order to hold specifications about number of guard bits in each tile-component.

GuardBitsSpec(int, int, byte) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec

Constructs an empty 'GuardBitsSpec' with specified number of tile and components.

GuardBitsSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec

Constructs a new 'GuardBitsSpec' for the specified number of components and tiles and the arguments of "-Qguard_bits" option.

GUITools - Class in loci.formats.gui

A utility class for working with graphical user interfaces.

GutsRecord - Class in loci.poi.hssf.record

Title: Guts Record

GutsRecord() - Constructor for class loci.poi.hssf.record.GutsRecord

GutsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GutsRecord

Constructs a Guts record and sets its fields appropriately.

GZipHandle - Class in loci.common

A legacy delegator class for ome.scifio.io.GZipHandle.

GZipHandle(String) - Constructor for class loci.common.GZipHandle

Construct a new GZipHandle for the given file.

GZipHandle - Class in ome.scifio.io

StreamHandle implementation for reading from gzip-compressed files or byte arrays.

GZipHandle(String) - Constructor for class ome.scifio.io.GZipHandle

Construct a new GZipHandle for the given file.

H

h - Variable in class jj2000.j2k.codestream.CoordInfo

Object's height

h - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct height in the corresponding resolution level

h - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Height of the code-block

h - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder

The vertical dimensions of the base level

h - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The vertical dimensions of the base level

h - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The height of the code-block

h - Variable in class jj2000.j2k.image.DataBlk

The height of the block, in pixels.

h - Variable in class jj2000.j2k.image.input.ImgReader

The height of the image

h - Variable in class jj2000.j2k.roi.encoder.ROI

height of rectangular ROI

h - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

Height of the subband mask

h - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The height of the code-block

h - Variable in class jj2000.j2k.wavelet.Subband

The height of the subband

HAIR - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

HALFTONE_HINTS - Static variable in class loci.formats.tiff.IFD

HamamatsuVMSReader - Class in loci.formats.in

HamamatsuVMSReader is the file format reader for Hamamatsu VMS datasets.

HamamatsuVMSReader() - Constructor for class loci.formats.in.HamamatsuVMSReader

Constructs a new Hamamatsu VMS reader.

handle - Variable in class loci.common.AbstractNIOHandle

handleException(Throwable) - Static method in class jj2000.j2k.JJ2KExceptionHandler

Handles the exception.

HandleException - Exception in loci.common

A legacy delegator class for ome.scifio.io.HandleException.

HandleException() - Constructor for exception loci.common.HandleException

HandleException(String) - Constructor for exception loci.common.HandleException

HandleException(String, Throwable) - Constructor for exception loci.common.HandleException

HandleException(Throwable) - Constructor for exception loci.common.HandleException

HandleException - Exception in ome.scifio.io

HandleException is the exception thrown when something goes wrong in one of the custom I/O classes.

HandleException() - Constructor for exception ome.scifio.io.HandleException

HandleException(String) - Constructor for exception ome.scifio.io.HandleException

HandleException(String, Throwable) - Constructor for exception ome.scifio.io.HandleException

HandleException(Throwable) - Constructor for exception ome.scifio.io.HandleException

handleExtension(String, Object[]) - Method in class loci.plugins.macro.MacroFunctions

handleMetadataStore(IFormatReader) - Method in class loci.formats.Memoizer

: Serialization: If an unknown MetadataStore implementation is passed in when no memo file exists, then a replacement MetadataStore will be created and set on the ReaderWrapper.reader delegate before calling ReaderWrapper.setId(String).

handler - Variable in class loci.common.xml.BaseHandler

harvestResults(GenericDialog) - Method in class loci.plugins.in.ColorDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.CropDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.FilePatternDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.IdDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.ImporterDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.LocationDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.MainDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.MemoryDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.RangeDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.SeriesDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.SwapDialog

harvestResults(GenericDialog) - Method in class loci.plugins.in.UpgradeDialog

hasCell() - Method in class loci.poi.hssf.util.RangeAddress

hasChildNodes() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

hasCompanionFiles - Variable in class loci.formats.FormatReader

Whether this format supports multi-file datasets.

hasCompanionFiles() - Method in class loci.formats.FormatReader

hasCompanionFiles() - Method in interface loci.formats.IFormatReader

Returns true if this format supports multi-file datasets.

hasCompanionFiles() - Method in class loci.formats.ImageReader

hasCompanionFiles() - Method in class loci.formats.ReaderWrapper

hasExposureTime(int) - Method in class loci.tests.testng.Configuration

hasExtendedMeasureInfo - Variable in class loci.formats.in.SDTInfo

hasFlattenedResolutions() - Method in class loci.formats.FormatReader

hasFlattenedResolutions() - Method in interface loci.formats.IFormatReader

Return whether or not resolution flattening is enabled.

hasFlattenedResolutions() - Method in class loci.formats.ImageReader

hasFlattenedResolutions() - Method in class loci.formats.ReaderWrapper

Hash(short, byte) - Static method in class com.sun.media.imageioimpl.common.LZWStringTable

hashCode() - Method in class loci.common.AbstractNIOHandle

hashCode() - Method in class loci.common.adapter.CodedEnumAdapter.LegacyWrapper

hashCode() - Method in class loci.common.adapter.CodedEnumAdapter.ModernWrapper

hashCode() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper

hashCode() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper

hashCode() - Method in class loci.common.adapter.StatusListenerAdapter.LegacyWrapper

hashCode() - Method in class loci.common.adapter.StatusListenerAdapter.ModernWrapper

hashCode() - Method in class loci.common.adapter.StatusReporterAdapter.LegacyWrapper

hashCode() - Method in class loci.common.adapter.StatusReporterAdapter.ModernWrapper

hashCode() - Method in class loci.common.CBZip2InputStream

hashCode() - Method in class loci.common.CRC

hashCode() - Method in exception loci.common.enumeration.EnumException

hashCode() - Method in class loci.common.FileHandle

hashCode() - Method in exception loci.common.HandleException

hashCode() - Method in class loci.common.IniList

hashCode() - Method in class loci.common.IniParser

hashCode() - Method in class loci.common.IniTable

hashCode() - Method in class loci.common.IniWriter

hashCode() - Method in class loci.common.Location

hashCode() - Method in class loci.common.RandomAccessInputStream

hashCode() - Method in class loci.common.RandomAccessOutputStream

hashCode() - Method in class loci.common.ReflectedUniverse

hashCode() - Method in exception loci.common.ReflectException

hashCode() - Method in class loci.common.Region

hashCode() - Method in class loci.common.StreamHandle

hashCode() - Method in class loci.common.xml.BaseHandler

hashCode() - Method in class loci.common.xml.ParserErrorHandler

hashCode() - Method in class loci.common.xml.ValidationErrorHandler

hashCode() - Method in class loci.formats.tiff.TiffRational

Reasonable hash value for use with hashtables.

hashCode() - Method in class loci.plugins.config.FormatEntry

hashCode() - Method in class loci.plugins.prefs.OptionsList

hashCode() - Method in class loci.poi.ddf.EscherComplexProperty

Calculates a hashcode for this property.

hashCode() - Method in class loci.poi.ddf.EscherSimpleProperty

Returns a hashcode so that this object can be stored in collections that require the use of such things.

hashCode() - Method in class loci.poi.hpsf.ClassID

hashCode() - Method in class loci.poi.hpsf.CustomProperty

hashCode() - Method in class loci.poi.hpsf.Property

hashCode() - Method in class loci.poi.hpsf.PropertySet

hashCode() - Method in class loci.poi.hpsf.Section

hashCode() - Method in class loci.poi.hpsf.SpecialPropertySet

hashCode() - Method in class loci.poi.hssf.record.formula.Area3DPtg

hashCode() - Method in class loci.poi.hssf.record.SSTRecord

hashCode() - Method in class loci.poi.hssf.record.UnicodeString

hashCode() - Method in class loci.poi.poifs.filesystem.DocumentDescriptor

calculate and return the hashcode

hashCode() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

calculate and return the hashcode

hashCode() - Method in class loci.poi.util.DoubleList

THIS MOST LIKELY DOES NOT WORK Returns the hash code value for this list.

hashCode() - Method in class loci.poi.util.IntList

Returns the hash code value for this list.

hashCode() - Method in class loci.poi.util.ShortList

Returns the hash code value for this list.

hashCode() - Method in class loci.tests.testng.Configuration

hashCode() - Method in class ome.scifio.common.Region

hashCode() - Method in class ome.scifio.io.Location

hashPassword(String) - Static method in class loci.poi.hssf.record.FileSharingRecord

hashPassword(String) - Static method in class loci.poi.hssf.record.PasswordRecord

hasImageDescription() - Method in class loci.tests.testng.Configuration

hasJPEGTables - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

hasMeasFCSInfo - Variable in class loci.formats.in.SDTInfo

hasMeasHISTInfo - Variable in class loci.formats.in.SDTInfo

hasMeasStopInfo - Variable in class loci.formats.in.SDTInfo

hasMeasureInfo - Variable in class loci.formats.in.SDTInfo

hasMultibyte(String) - Static method in class loci.poi.util.StringUtil

check the parameter has multibyte character

hasNext() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

hasNextRecord() - Method in class loci.poi.hssf.record.RecordInputStream

hasPlainTextExtension - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

hasRange() - Method in class loci.poi.hssf.util.RangeAddress

hasSheetName() - Method in class loci.poi.hssf.util.RangeAddress

hasThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

hasValueNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns true if there are mnemonic names associated with the set of legal values for the data associated with this tag.

hbuf - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The DataOutputStream to store header data.

HCenterRecord - Class in loci.poi.hssf.record

Title: HCenter record

HCenterRecord() - Constructor for class loci.poi.hssf.record.HCenterRecord

HCenterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HCenterRecord

Constructs an HCenter record and sets its fields appropriately.

HCS_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the high content screening domain.

hd - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The decoded bit stream header

HDF_MAGIC_STRING - Static variable in class loci.formats.in.ImarisHDFReader

header - Variable in class loci.poi.hssf.model.Sheet

HEADER_KEY - Static variable in class loci.common.IniTable

Key to use for storing header value (in brackets).

HEADER_KEY - Static variable in class ome.scifio.common.IniTable

Key to use for storing header value (in brackets).

HEADER_MARKER - Static variable in class loci.formats.in.VisitechReader

HEADER_SIZE - Static variable in class loci.formats.in.UBMReader

HeaderBlockConstants - Interface in loci.poi.poifs.storage

Constants used in reading/writing the Header block

HeaderBlockReader - Class in loci.poi.poifs.storage

The block containing the archive header

HeaderBlockReader(InputStream, int) - Constructor for class loci.poi.poifs.storage.HeaderBlockReader

create a new HeaderBlockReader from an InputStream

HeaderBlockWriter - Class in loci.poi.poifs.storage

The block containing the archive header

HeaderBlockWriter(int) - Constructor for class loci.poi.poifs.storage.HeaderBlockWriter

Create a single instance initialized with default values

HeaderBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent an Image Header Box of JPEG JP2 file format.

HeaderBox(int, int, int, int, int, int, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Create an Image Header Box from the element values.

HeaderBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Create an Image Header Box using the content data.

HeaderBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Constructs an Image Header Box from a Node.

HeaderDecoder - Class in jj2000.j2k.codestream.reader

This class reads Main and Tile-part headers from the codestream.

HeaderDecoder(RandomAccessIO, J2KImageReadParamJava, HeaderInfo) - Constructor for class jj2000.j2k.codestream.reader.HeaderDecoder

Creates a HeaderDecoder instance and read in two passes the main header of the codestream.

HeaderEncoder - Class in jj2000.j2k.codestream.writer

This class writes almost of the markers and marker segments in main header and in tile-part headers.

HeaderEncoder(ImgData, boolean[], ForwardWT, Tiler, J2KImageWriteParamJava, ROIScaler, PostCompRateAllocator) - Constructor for class jj2000.j2k.codestream.writer.HeaderEncoder

Initializes the header writer with the references to the coding chain.

headerIFDs - Variable in class loci.formats.in.LeicaReader

Array of IFD-like structures containing metadata.

HeaderInfo - Class in jj2000.j2k.codestream

Classe that holds information found in the marker segments of the main and tile-part headers.

HeaderInfo() - Constructor for class jj2000.j2k.codestream.HeaderInfo

HeaderInfo.COC - Class in jj2000.j2k.codestream

Internal class holding information found in the COC marker segments

HeaderInfo.COC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COC

HeaderInfo.COD - Class in jj2000.j2k.codestream

Internal class holding information found in the COD marker segments

HeaderInfo.COD() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COD

HeaderInfo.COM - Class in jj2000.j2k.codestream

Internal class holding information found in the COM marker segments

HeaderInfo.COM() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COM

HeaderInfo.CRG - Class in jj2000.j2k.codestream

Internal class holding information found in the CRG marker segment

HeaderInfo.CRG() - Constructor for class jj2000.j2k.codestream.HeaderInfo.CRG

HeaderInfo.POC - Class in jj2000.j2k.codestream

Internal class holding information found in the POC marker segments

HeaderInfo.POC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.POC

HeaderInfo.QCC - Class in jj2000.j2k.codestream

Internal class holding information found in the QCC marker segments

HeaderInfo.QCC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.QCC

HeaderInfo.QCD - Class in jj2000.j2k.codestream

Internal class holding information found in the QCD marker segments

HeaderInfo.QCD() - Constructor for class jj2000.j2k.codestream.HeaderInfo.QCD

HeaderInfo.RGN - Class in jj2000.j2k.codestream

Internal class holding information found in the RGN marker segments

HeaderInfo.RGN() - Constructor for class jj2000.j2k.codestream.HeaderInfo.RGN

HeaderInfo.SIZ - Class in jj2000.j2k.codestream

Internal class holding information found in the SIZ marker segment

HeaderInfo.SIZ() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SIZ

HeaderInfo.SOT - Class in jj2000.j2k.codestream

Internal class holding information found in the SOt marker segments

HeaderInfo.SOT() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SOT

HeaderRecord - Class in loci.poi.hssf.record

Title: Header Record

HeaderRecord() - Constructor for class loci.poi.hssf.record.HeaderRecord

HeaderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HeaderRecord

Constructs an Header record and sets its fields appropriately.

headerValid - Variable in class loci.formats.in.SDTInfo

height - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The image's height in pixels.

height - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

height - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

height - Variable in class loci.formats.codec.CodecOptions

Height, in pixels, of the image.

height - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

height - Variable in class loci.formats.in.SDTInfo

height - Variable in class loci.formats.tools.AmiraParameters

height - Variable in class ome.scifio.common.Region

HELIOS_TAG - Static variable in class loci.formats.in.FEITiffReader

HELP_MENU - Static variable in class loci.plugins.shortcut.ShortcutPanel

Name of the 'About Plugins' submenu.

HexDump - Class in loci.poi.util

dump data in hexadecimal format; derived from a HexDump utility I wrote in June 2001.

HexRead - Class in loci.poi.util

Utilities to read hex from files.

HexRead() - Constructor for class loci.poi.util.HexRead

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.AQUA

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLACK

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BROWN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.CORAL

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GOLD

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.INDIGO

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LAVENDER

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIME

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.MAROON

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ORANGE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ORCHID

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PINK

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.RED

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ROSE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TAN

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.WHITE

hexString - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW

hFilter - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The horizontal analysis filter used to decompose this subband.

hFilter - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The horizontal analysis filter used to recompose this subband, from its childs.

hh - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child HH

HIDE_ALL - Static variable in class loci.poi.hssf.record.HideObjRecord

HideObjRecord - Class in loci.poi.hssf.record

Title: Hide Object Record

HideObjRecord() - Constructor for class loci.poi.hssf.record.HideObjRecord

HideObjRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HideObjRecord

Constructs an HideObj record and sets its fields appropriately.

HIGH_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy

HIS_MAGIC_STRING - Static variable in class loci.formats.in.HISReader

HISReader - Class in loci.formats.in

HISReader is the file format reader for Hamamatsu .his files.

HISReader() - Constructor for class loci.formats.in.HISReader

Constructs a new Hamamatsu .his reader.

HISTOLOGY_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the histology domain.

HISTORY_MASK - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default for a normal sheet (0x41)

hit(Rectangle, Shape, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

hit(Rectangle, Shape, boolean) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

HitachiReader - Class in loci.formats.in

HitachiReader is the file format reader for S-4800 files.

HitachiReader() - Constructor for class loci.formats.in.HitachiReader

Constructs a new Hitachi reader.

hitClip(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

hl - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child HL

Holder - Class in mdbtools.libmdb

Holder() - Constructor for class mdbtools.libmdb.Holder

HORIZONTAL_ALIGNMENT_BOTTOM - Static variable in class loci.poi.hssf.record.TextRecord

HORIZONTAL_ALIGNMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord

HORIZONTAL_ALIGNMENT_JUSTIFY - Static variable in class loci.poi.hssf.record.TextRecord

HORIZONTAL_ALIGNMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord

HORIZONTAL_SID - Static variable in class loci.poi.hssf.record.PageBreakRecord

HORIZONTAL_TEXT_ALIGNMENT_CENTERED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

HORIZONTAL_TEXT_ALIGNMENT_JUSTIFIED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

HORIZONTAL_TEXT_ALIGNMENT_LEFT_ALIGNED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

HORIZONTAL_TEXT_ALIGNMENT_RIGHT_ALIGNED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord

HorizontalPageBreakRecord - Class in loci.poi.hssf.record

HorizontalPageBreak record that stores page breaks at rows

HorizontalPageBreakRecord() - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord

HorizontalPageBreakRecord(short) - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord

HorizontalPageBreakRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord

horz - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Black and white horizontal mode table.

horzMode - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Horizontal mode table.

HOST_COMPUTER - Static variable in class loci.formats.tiff.IFD

HPSFException - Exception in loci.poi.hpsf

This exception is the superclass of all other checked exceptions thrown in this package.

HPSFException() - Constructor for exception loci.poi.hpsf.HPSFException

Creates an HPSFException.

HPSFException(String) - Constructor for exception loci.poi.hpsf.HPSFException

Creates an HPSFException with a message string.

HPSFException(Throwable) - Constructor for exception loci.poi.hpsf.HPSFException

Creates a new HPSFException with a reason.

HPSFException(String, Throwable) - Constructor for exception loci.poi.hpsf.HPSFException

Creates an HPSFException with a message string and a reason.

HPSFRuntimeException - Exception in loci.poi.hpsf

This exception is the superclass of all other unchecked exceptions thrown in this package.

HPSFRuntimeException() - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException.

HPSFRuntimeException(String) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException with a message string.

HPSFRuntimeException(Throwable) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException with a reason.

HPSFRuntimeException(String, Throwable) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException with a message string and a reason.

HRDGDFReader - Class in loci.formats.in

HRDGDFReader is the file format reader for the Gridded Data Format used by NOAA's Hurricane Research Division.

HRDGDFReader() - Constructor for class loci.formats.in.HRDGDFReader

Constructs a new Gridded Data Format reader.

HSSF - Class in loci.poi.hssf.dev

File for HSSF testing/examples THIS IS NOT THE MAIN HSSF FILE!! This is a util for testing functionality.

HSSF(String) - Constructor for class loci.poi.hssf.dev.HSSF

Constructor HSSF - creates an HSSFStream from an InputStream.

HSSF(String, boolean) - Constructor for class loci.poi.hssf.dev.HSSF

Constructor HSSF - given a filename this outputs a sample sheet with just a set of rows/cells.

HSSF(String, String, boolean) - Constructor for class loci.poi.hssf.dev.HSSF

Constructor HSSF - takes in file - attempts to read it then reconstruct it

HSSFAnchor - Class in loci.poi.hssf.usermodel

An anchor is what specifics the position of a shape within a client object or within another containing shape.

HSSFAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFAnchor

HSSFAnchor(int, int, int, int) - Constructor for class loci.poi.hssf.usermodel.HSSFAnchor

HSSFCell - Class in loci.poi.hssf.usermodel

High level representation of a cell in a row of a spreadsheet.

HSSFCell(Workbook, Sheet, int, short) - Constructor for class loci.poi.hssf.usermodel.HSSFCell

Creates new Cell - Should only be called by HSSFRow.

HSSFCell(Workbook, Sheet, int, short, int) - Constructor for class loci.poi.hssf.usermodel.HSSFCell

Creates new Cell - Should only be called by HSSFRow.

HSSFCell(Workbook, Sheet, int, CellValueRecordInterface) - Constructor for class loci.poi.hssf.usermodel.HSSFCell

Creates an HSSFCell from a CellValueRecordInterface.

HSSFCellStyle - Class in loci.poi.hssf.usermodel

High level representation of the style of a cell in a sheet of a workbook.

HSSFCellStyle(short, ExtendedFormatRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFCellStyle

Creates new HSSFCellStyle why would you want to do this??

HSSFChildAnchor - Class in loci.poi.hssf.usermodel

HSSFChildAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFChildAnchor

HSSFChildAnchor(int, int, int, int) - Constructor for class loci.poi.hssf.usermodel.HSSFChildAnchor

HSSFClientAnchor - Class in loci.poi.hssf.usermodel

A client anchor is attached to an excel worksheet.

HSSFClientAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFClientAnchor

Creates a new client anchor and defaults all the anchor positions to 0.

HSSFClientAnchor(int, int, int, int, short, int, short, int) - Constructor for class loci.poi.hssf.usermodel.HSSFClientAnchor

Creates a new client anchor and sets the top-left and bottom-right coordinates of the anchor.

HSSFColor - Class in loci.poi.hssf.util

Intends to provide support for the very evil index to triplet issue and will likely replace the color contants interface for HSSF 2.0.

HSSFColor() - Constructor for class loci.poi.hssf.util.HSSFColor

Creates a new instance of HSSFColor

HSSFColor.AQUA - Class in loci.poi.hssf.util

Class AQUA

HSSFColor.AQUA() - Constructor for class loci.poi.hssf.util.HSSFColor.AQUA

HSSFColor.AUTOMATIC - Class in loci.poi.hssf.util

Special Default/Normal/Automatic color.

HSSFColor.AUTOMATIC() - Constructor for class loci.poi.hssf.util.HSSFColor.AUTOMATIC

HSSFColor.BLACK - Class in loci.poi.hssf.util

Class BLACK

HSSFColor.BLACK() - Constructor for class loci.poi.hssf.util.HSSFColor.BLACK

HSSFColor.BLUE - Class in loci.poi.hssf.util

Class BLUE

HSSFColor.BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.BLUE

HSSFColor.BLUE_GREY - Class in loci.poi.hssf.util

Class BLUE_GREY

HSSFColor.BLUE_GREY() - Constructor for class loci.poi.hssf.util.HSSFColor.BLUE_GREY

HSSFColor.BRIGHT_GREEN - Class in loci.poi.hssf.util

Class BRIGHT_GREEN

HSSFColor.BRIGHT_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

HSSFColor.BROWN - Class in loci.poi.hssf.util

Class BROWN

HSSFColor.BROWN() - Constructor for class loci.poi.hssf.util.HSSFColor.BROWN

HSSFColor.CORAL - Class in loci.poi.hssf.util

Class CORAL

HSSFColor.CORAL() - Constructor for class loci.poi.hssf.util.HSSFColor.CORAL

HSSFColor.CORNFLOWER_BLUE - Class in loci.poi.hssf.util

Class CORNFLOWER_BLUE

HSSFColor.CORNFLOWER_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

HSSFColor.DARK_BLUE - Class in loci.poi.hssf.util

Class DARK_BLUE

HSSFColor.DARK_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_BLUE

HSSFColor.DARK_GREEN - Class in loci.poi.hssf.util

Class DARK_GREEN

HSSFColor.DARK_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_GREEN

HSSFColor.DARK_RED - Class in loci.poi.hssf.util

Class DARK_RED

HSSFColor.DARK_RED() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_RED

HSSFColor.DARK_TEAL - Class in loci.poi.hssf.util

Class DARK_TEAL

HSSFColor.DARK_TEAL() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_TEAL

HSSFColor.DARK_YELLOW - Class in loci.poi.hssf.util

Class DARK_YELLOW

HSSFColor.DARK_YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

HSSFColor.GOLD - Class in loci.poi.hssf.util

Class GOLD

HSSFColor.GOLD() - Constructor for class loci.poi.hssf.util.HSSFColor.GOLD

HSSFColor.GREEN - Class in loci.poi.hssf.util

Class GREEN

HSSFColor.GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.GREEN

HSSFColor.GREY_25_PERCENT - Class in loci.poi.hssf.util

Class GREY_25_PERCENT

HSSFColor.GREY_25_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

HSSFColor.GREY_40_PERCENT - Class in loci.poi.hssf.util

Class GREY_40_PERCENT

HSSFColor.GREY_40_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

HSSFColor.GREY_50_PERCENT - Class in loci.poi.hssf.util

Class GREY_50_PERCENT

HSSFColor.GREY_50_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

HSSFColor.GREY_80_PERCENT - Class in loci.poi.hssf.util

Class GREY_80_PERCENT

HSSFColor.GREY_80_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

HSSFColor.INDIGO - Class in loci.poi.hssf.util

Class INDIGO

HSSFColor.INDIGO() - Constructor for class loci.poi.hssf.util.HSSFColor.INDIGO

HSSFColor.LAVENDER - Class in loci.poi.hssf.util

Class LAVENDER

HSSFColor.LAVENDER() - Constructor for class loci.poi.hssf.util.HSSFColor.LAVENDER

HSSFColor.LEMON_CHIFFON - Class in loci.poi.hssf.util

Class LEMON_CHIFFON

HSSFColor.LEMON_CHIFFON() - Constructor for class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

HSSFColor.LIGHT_BLUE - Class in loci.poi.hssf.util

Class LIGHT_BLUE

HSSFColor.LIGHT_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

HSSFColor.LIGHT_CORNFLOWER_BLUE - Class in loci.poi.hssf.util

Class LIGHT_CORNFLOWER_BLUE

HSSFColor.LIGHT_CORNFLOWER_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

HSSFColor.LIGHT_GREEN - Class in loci.poi.hssf.util

Class LIGHT_GREEN

HSSFColor.LIGHT_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

HSSFColor.LIGHT_ORANGE - Class in loci.poi.hssf.util

Class LIGHT_ORANGE

HSSFColor.LIGHT_ORANGE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

HSSFColor.LIGHT_TURQUOISE - Class in loci.poi.hssf.util

Class LIGHT_TURQUOISE

HSSFColor.LIGHT_TURQUOISE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

HSSFColor.LIGHT_YELLOW - Class in loci.poi.hssf.util

Class LIGHT_YELLOW

HSSFColor.LIGHT_YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

HSSFColor.LIME - Class in loci.poi.hssf.util

Class LIME

HSSFColor.LIME() - Constructor for class loci.poi.hssf.util.HSSFColor.LIME

HSSFColor.MAROON - Class in loci.poi.hssf.util

Class MAROON

HSSFColor.MAROON() - Constructor for class loci.poi.hssf.util.HSSFColor.MAROON

HSSFColor.OLIVE_GREEN - Class in loci.poi.hssf.util

Class OLIVE_GREEN

HSSFColor.OLIVE_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

HSSFColor.ORANGE - Class in loci.poi.hssf.util

Class ORANGE

HSSFColor.ORANGE() - Constructor for class loci.poi.hssf.util.HSSFColor.ORANGE

HSSFColor.ORCHID - Class in loci.poi.hssf.util

Class ORCHID

HSSFColor.ORCHID() - Constructor for class loci.poi.hssf.util.HSSFColor.ORCHID

HSSFColor.PALE_BLUE - Class in loci.poi.hssf.util

Class PALE_BLUE

HSSFColor.PALE_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.PALE_BLUE

HSSFColor.PINK - Class in loci.poi.hssf.util

Class PINK

HSSFColor.PINK() - Constructor for class loci.poi.hssf.util.HSSFColor.PINK

HSSFColor.PLUM - Class in loci.poi.hssf.util

Class PLUM

HSSFColor.PLUM() - Constructor for class loci.poi.hssf.util.HSSFColor.PLUM

HSSFColor.RED - Class in loci.poi.hssf.util

Class RED

HSSFColor.RED() - Constructor for class loci.poi.hssf.util.HSSFColor.RED

HSSFColor.ROSE - Class in loci.poi.hssf.util

Class ROSE

HSSFColor.ROSE() - Constructor for class loci.poi.hssf.util.HSSFColor.ROSE

HSSFColor.ROYAL_BLUE - Class in loci.poi.hssf.util

Class ROYAL_BLUE

HSSFColor.ROYAL_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

HSSFColor.SEA_GREEN - Class in loci.poi.hssf.util

Class SEA_GREEN

HSSFColor.SEA_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.SEA_GREEN

HSSFColor.SKY_BLUE - Class in loci.poi.hssf.util

Class SKY_BLUE

HSSFColor.SKY_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.SKY_BLUE

HSSFColor.TAN - Class in loci.poi.hssf.util

Class TAN

HSSFColor.TAN() - Constructor for class loci.poi.hssf.util.HSSFColor.TAN

HSSFColor.TEAL - Class in loci.poi.hssf.util

Class TEAL

HSSFColor.TEAL() - Constructor for class loci.poi.hssf.util.HSSFColor.TEAL

HSSFColor.TURQUOISE - Class in loci.poi.hssf.util

Class TURQUOISE

HSSFColor.TURQUOISE() - Constructor for class loci.poi.hssf.util.HSSFColor.TURQUOISE

HSSFColor.VIOLET - Class in loci.poi.hssf.util

Class VIOLET

HSSFColor.VIOLET() - Constructor for class loci.poi.hssf.util.HSSFColor.VIOLET

HSSFColor.WHITE - Class in loci.poi.hssf.util

Class WHITE

HSSFColor.WHITE() - Constructor for class loci.poi.hssf.util.HSSFColor.WHITE

HSSFColor.YELLOW - Class in loci.poi.hssf.util

Class YELLOW

HSSFColor.YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.YELLOW

HSSFComment - Class in loci.poi.hssf.usermodel

Represents a cell comment - a sticky note associated with a cell.

HSSFComment(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFComment

Construct a new comment with the given parent and anchor.

HSSFComment(NoteRecord, TextObjectRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFComment

HSSFDataFormat - Class in loci.poi.hssf.usermodel

Utility to identify builtin formats.

HSSFDataFormat(Workbook) - Constructor for class loci.poi.hssf.usermodel.HSSFDataFormat

Construncts a new data formatter.

HSSFDateUtil - Class in loci.poi.hssf.usermodel

Contains methods for dealing with Excel dates.

HSSFErrorConstants - Interface in loci.poi.hssf.usermodel

contains constants representing Excel error codes.

HSSFEventFactory - Class in loci.poi.hssf.eventusermodel

Low level event based HSSF reader.

HSSFEventFactory() - Constructor for class loci.poi.hssf.eventusermodel.HSSFEventFactory

Creates a new instance of HSSFEventFactory

HSSFFont - Class in loci.poi.hssf.usermodel

Represents a Font used in a workbook.

HSSFFont(short, FontRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFFont

Creates a new instance of HSSFFont

HSSFFooter - Class in loci.poi.hssf.usermodel

Class to read and manipulate the footer.

HSSFFooter(FooterRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFFooter

Constructor.

HSSFHeader - Class in loci.poi.hssf.usermodel

Class to read and manipulate the header.

HSSFHeader(HeaderRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFHeader

Constructor.

HSSFListener - Interface in loci.poi.hssf.eventusermodel

Interface for use with the HSSFRequest and HSSFEventFactory.

HSSFName - Class in loci.poi.hssf.usermodel

Title: High Level Represantion of Named Range

HSSFName(Workbook, NameRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFName

Creates new HSSFName - called by HSSFWorkbook to create a sheet from scratch.

HSSFObjectData - Class in loci.poi.hssf.usermodel

Represents binary object (i.e.

HSSFObjectData(ObjRecord, POIFSFileSystem) - Constructor for class loci.poi.hssf.usermodel.HSSFObjectData

Constructs object data by wrapping a lower level object record.

HSSFPalette - Class in loci.poi.hssf.usermodel

Represents a workbook color palette.

HSSFPalette(PaletteRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFPalette

HSSFPatriarch - Class in loci.poi.hssf.usermodel

The patriarch is the toplevel container for shapes in a sheet.

HSSFPicture - Class in loci.poi.hssf.usermodel

Represents a escher picture.

HSSFPictureData - Class in loci.poi.hssf.usermodel

Represents binary data stored in the file.

HSSFPolygon - Class in loci.poi.hssf.usermodel

HSSFPrintSetup - Class in loci.poi.hssf.usermodel

Used to modify the print setup.

HSSFPrintSetup(PrintSetupRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFPrintSetup

Constructor.

HSSFRequest - Class in loci.poi.hssf.eventusermodel

An HSSFRequest object should be constructed registering an instance or multiple instances of HSSFListener with each Record.sid you wish to listen for.

HSSFRequest() - Constructor for class loci.poi.hssf.eventusermodel.HSSFRequest

Creates a new instance of HSSFRequest

HSSFRichTextString - Class in loci.poi.hssf.usermodel

Rich text unicode string.

HSSFRichTextString() - Constructor for class loci.poi.hssf.usermodel.HSSFRichTextString

HSSFRichTextString(String) - Constructor for class loci.poi.hssf.usermodel.HSSFRichTextString

HSSFRow - Class in loci.poi.hssf.usermodel

High level representation of a row of a spreadsheet.

HSSFRow() - Constructor for class loci.poi.hssf.usermodel.HSSFRow

HSSFRow(Workbook, Sheet, int) - Constructor for class loci.poi.hssf.usermodel.HSSFRow

Creates new HSSFRow from scratch.

HSSFRow(Workbook, Sheet, RowRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFRow

Creates an HSSFRow from a low level RowRecord object.

HSSFShape - Class in loci.poi.hssf.usermodel

An abstract shape.

HSSFShapeContainer - Interface in loci.poi.hssf.usermodel

An interface that indicates whether a class can contain children.

HSSFShapeGroup - Class in loci.poi.hssf.usermodel

A shape group may contain other shapes.

HSSFShapeGroup(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFShapeGroup

HSSFSheet - Class in loci.poi.hssf.usermodel

High level representation of a worksheet.

HSSFSheet(HSSFWorkbook) - Constructor for class loci.poi.hssf.usermodel.HSSFSheet

Creates new HSSFSheet - called by HSSFWorkbook to create a sheet from scratch.

HSSFSheet(HSSFWorkbook, Sheet) - Constructor for class loci.poi.hssf.usermodel.HSSFSheet

Creates an HSSFSheet representing the given Sheet object.

HSSFSimpleShape - Class in loci.poi.hssf.usermodel

Represents a simple shape such as a line, rectangle or oval.

HSSFTextbox - Class in loci.poi.hssf.usermodel

A textbox is a shape that may hold a rich text string.

HSSFTextbox(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFTextbox

Construct a new textbox with the given parent and anchor.

HSSFUserException - Exception in loci.poi.hssf.eventusermodel

This exception is provided as a way for API users to throw exceptions from their event handling code.

HSSFUserException() - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException.

HSSFUserException(String) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException with a message string.

HSSFUserException(Throwable) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException with a reason.

HSSFUserException(String, Throwable) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException with a message string and a reason.

hssfworkbook - Variable in class loci.poi.hssf.dev.HSSF

HSSFWorkbook - Class in loci.poi.hssf.usermodel

High level representation of a workbook.

HSSFWorkbook() - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

Creates new HSSFWorkbook from scratch (start here!)

HSSFWorkbook(Workbook) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

HSSFWorkbook(POIFSFileSystem) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

HSSFWorkbook(POIFSFileSystem, boolean) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

given a POI POIFSFileSystem object, read in its Workbook and populate the high and low level models.

HSSFWorkbook(RandomAccessInputStream) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

HSSFWorkbook(RandomAccessInputStream, boolean) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

Companion to HSSFWorkbook(POIFSFileSystem), this constructs the POI filesystem around your inputstream.

HTM_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

HTML_REGEX - Static variable in class loci.formats.in.PerkinElmerReader

HTML_SUFFIX - Static variable in class loci.formats.in.VisitechReader

HuffmanCodec - Class in loci.formats.codec

This class implements Huffman decoding.

HuffmanCodec() - Constructor for class loci.formats.codec.HuffmanCodec

HuffmanCodecOptions - Class in loci.formats.codec

Options for compressing and decompressing Huffman data.

HuffmanCodecOptions() - Constructor for class loci.formats.codec.HuffmanCodecOptions

I

i - Variable in class mdbtools.libmdb.Holder

I18NImpl - Class in com.sun.media.imageioimpl.common

Class to simplify use of internationalization message strings.

I18NImpl() - Constructor for class com.sun.media.imageioimpl.common.I18NImpl

ICacheSource - Interface in loci.formats.cache

Interface for cache sources.

ICacheStrategy - Interface in loci.formats.cache

Interface for cache strategies.

iccs - Variable in class jj2000.j2k.decoder.DecoderSpecs

ICC Profiling specifications

icon - Variable in class loci.formats.gui.ImageViewer

icon - Variable in class loci.formats.gui.PreviewPane

iconLabel - Variable in class loci.formats.gui.ImageViewer

iconLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

iconText - Variable in class loci.formats.gui.PreviewPane

iconTip - Variable in class loci.formats.gui.PreviewPane

ICSReader - Class in loci.formats.in

ICSReader is the file format reader for ICS (Image Cytometry Standard) files.

ICSReader() - Constructor for class loci.formats.in.ICSReader

Constructs a new ICSReader.

ICSWriter - Class in loci.formats.out

ICSWriter is the file format writer for ICS files.

ICSWriter() - Constructor for class loci.formats.out.ICSWriter

id - Variable in class loci.plugins.util.BFVirtualStack

id - Variable in class loci.poi.ddf.EscherProperty

id - Variable in class loci.poi.hpsf.Property

The property's ID.

IdDialog - Class in loci.plugins.in

Bio-Formats Importer id chooser dialog box.

IdDialog(ImportProcess) - Constructor for class loci.plugins.in.IdDialog

Creates an id chooser dialog for the Bio-Formats Importer.

idLoc - Variable in class loci.plugins.in.ImportProcess

idName - Variable in class loci.plugins.in.ImportProcess

idx - Variable in class jj2000.j2k.codestream.CBlkCoordInfo

The code-block horizontal and vertical indexes

idxmap_base_pg - Variable in class mdbtools.libmdb.MdbTableDef

idxmap_sz - Variable in class mdbtools.libmdb.MdbTableDef

IEnumerationHandler - Interface in ome.xml.model.enums.handlers

An enumeration provider for making OME data model enumerations available.

IFD - Class in loci.formats.tiff

Data structure for working with TIFF Image File Directories (IFDs).

IFD() - Constructor for class loci.formats.tiff.IFD

IFD(IFD) - Constructor for class loci.formats.tiff.IFD

IFDList - Class in loci.formats.tiff

Data structure for working with a list of TIFF IFDs.

IFDList() - Constructor for class loci.formats.tiff.IFDList

ifds - Variable in class loci.formats.in.LeicaReader

ifds - Variable in class loci.formats.in.MinimalTiffReader

List of IFDs for the current TIFF.

IFDType - Enum in loci.formats.tiff

An enumeration of IFD types.

IFormatHandler - Interface in loci.formats

Interface for all biological file format readers and writers.

IFormatReader - Interface in loci.formats

Interface for all biological file format readers.

IFormatWidgets - Interface in loci.plugins.config

Interface for defining custom widgets for a specific file format reader.

IFormatWriter - Interface in loci.formats

Interface for all biological file format writers.

IISRandomAccessIO - Class in com.sun.media.imageioimpl.plugins.jpeg2000

A wrapper for converting an ImageInputStream into a RandomAccessIO.

IISRandomAccessIO(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Creates a RandomAccessIO instance from the supplied ImageInputStream.

IJStatusEchoer - Class in loci.plugins.util

Echoes status messages to the ImageJ status bar.

IJStatusEchoer() - Constructor for class loci.plugins.util.IJStatusEchoer

IllegalPropertySetDataException - Exception in loci.poi.hpsf

This exception is thrown when there is an illegal value set in a PropertySet.

IllegalPropertySetDataException() - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalPropertySetDataException(String) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalPropertySetDataException(Throwable) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalPropertySetDataException(String, Throwable) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalVariantTypeException - Exception in loci.poi.hpsf

This exception is thrown if HPSF encounters a variant type that is illegal in the current context.

IllegalVariantTypeException(long, Object, String) - Constructor for exception loci.poi.hpsf.IllegalVariantTypeException

Constructor

IllegalVariantTypeException(long, Object) - Constructor for exception loci.poi.hpsf.IllegalVariantTypeException

Constructor

ILLUMINATION - Static variable in class loci.formats.FormatTools

Identifies the Illumination dimensional type, representing a dimension consisting of illuminations.

IlluminationType - Enum in ome.xml.model.enums

IlluminationTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for IlluminationType.

IlluminationTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

ImaconReader - Class in loci.formats.in

ImaconReader is the file format reader for Imacon .fff (TIFF) files.

ImaconReader() - Constructor for class loci.formats.in.ImaconReader

Constructs a new Imacon reader.

image - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The final destination image.

image - Variable in class loci.formats.in.LegacyQTReader

Image containing current frame.

Image - Class in ome.xml.model

Image() - Constructor for class ome.xml.model.Image

Default constructor.

Image(Element, OMEModel) - Constructor for class ome.xml.model.Image

Constructs Image recursively from an XML DOM tree.

Image(Image) - Constructor for class ome.xml.model.Image

Copy constructor.

IMAGE_DESCRIPTION - Static variable in class loci.formats.tiff.IFD

IMAGE_HEADER_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

JP2 Header boxes

IMAGE_LENGTH - Static variable in class loci.formats.tiff.IFD

IMAGE_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

IMAGE_SOURCE_DATA - Static variable in class loci.formats.in.PhotoshopTiffReader

IMAGE_WIDTH - Static variable in class loci.formats.tiff.IFD

imageCount - Variable in class loci.formats.CoreMetadata

Total number of images.

imageDescription - Variable in class loci.formats.in.BaseZeissReader

imageFiles - Variable in class loci.formats.in.BaseZeissReader

imageHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

imageID - Variable in class loci.ome.io.OMECredentials

ImageInputStreamWrapper - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is designed to wrap a ImageInputStream into a InputStream.

ImageInputStreamWrapper(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

Constructs an ImageInputStreamWrapper from the provided ImageInputStream.

ImageIOReader - Class in loci.formats.in

ImageIOReader is the superclass for file format readers that use the javax.imageio package.

ImageIOReader(String, String) - Constructor for class loci.formats.in.ImageIOReader

Constructs a new ImageIOReader.

ImageIOReader(String, String[]) - Constructor for class loci.formats.in.ImageIOReader

Constructs a new ImageIOReader.

ImageIOWriter - Class in loci.formats.out

ImageIOWriter is the superclass for file format writers that use the javax.imageio library.

ImageIOWriter(String, String, String) - Constructor for class loci.formats.out.ImageIOWriter

Constructs an ImageIO-based writer with the given name, default suffix and output type (e.g., png, jpeg).

ImageIOWriter(String, String[], String) - Constructor for class loci.formats.out.ImageIOWriter

Constructs an ImageIO-based writer with the given name, default suffixes and output type (e.g., png, jpeg).

imageIsContiguous(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Returns whether the image has contiguous data across rows.

IMAGEJ_MSG - Static variable in class loci.plugins.util.LibraryChecker

Message to be displayed if ImageJ is too old for LOCI plugins.

IMAGEJ_TAG - Static variable in class loci.formats.in.TiffReader

IMAGEJ_VERSION - Static variable in class loci.plugins.util.LibraryChecker

Minimum version of ImageJ necessary for LOCI plugins.

imageLeftPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

ImagePlusReader - Class in loci.plugins.in

A high-level reader for ImagePlus objects.

ImagePlusReader() - Constructor for class loci.plugins.in.ImagePlusReader

Constructs an ImagePlusReader with the default options.

ImagePlusReader(ImportProcess) - Constructor for class loci.plugins.in.ImagePlusReader

Constructs an ImagePlusReader with the given complete import preparation process.

ImageProcessorReader - Class in loci.plugins.util

A low-level reader for ImageProcessor objects.

ImageProcessorReader() - Constructor for class loci.plugins.util.ImageProcessorReader

Constructs an ImageProcessorReader around a new image reader.

ImageProcessorReader(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorReader

Constructs an ImageProcessorReader with the given reader.

ImageProcessorSource - Class in loci.plugins.util

Retrieves ImageJ image processors from an image reader.

ImageProcessorSource(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorSource

ImageReader - Class in loci.formats

ImageReader is the master file format reader for all supported formats.

ImageReader() - Constructor for class loci.formats.ImageReader

Constructs a new ImageReader with the default list of reader classes from readers.txt.

ImageReader(ClassList<IFormatReader>) - Constructor for class loci.formats.ImageReader

Constructs a new ImageReader from the given list of reader classes.

ImageRef - Class in ome.xml.model

ImageRef() - Constructor for class ome.xml.model.ImageRef

Default constructor.

ImageRef(Element, OMEModel) - Constructor for class ome.xml.model.ImageRef

Constructs ImageRef recursively from an XML DOM tree.

ImageRef(ImageRef) - Constructor for class ome.xml.model.ImageRef

Copy constructor.

imageRX - Variable in class loci.formats.in.SDTInfo

imageRY - Variable in class loci.formats.in.SDTInfo

images - Variable in class loci.formats.gui.ImageViewer

imageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

ImageTester - Class in loci.tests

A class for testing the AWTImageTools.makeImage(byte[], int, int, boolean) methods.

ImageTester(BufferedImage[][]) - Constructor for class loci.tests.ImageTester

ImageTools - Class in loci.formats

A utility class with convenience methods for manipulating images in primitive array form.

imageTopPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

ImageUtil - Class in com.sun.media.imageioimpl.common

ImageUtil() - Constructor for class com.sun.media.imageioimpl.common.ImageUtil

ImageViewer - Class in loci.formats.gui

ImageViewer is a simple viewer/converter for the Bio-Formats image formats.

ImageViewer() - Constructor for class loci.formats.gui.ImageViewer

Constructs an image viewer.

ImageViewer(boolean) - Constructor for class loci.formats.gui.ImageViewer

Constructs an image viewer.

imageWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

ImageWriter - Class in loci.formats

ImageWriter is the master file format writer for all supported formats.

ImageWriter() - Constructor for class loci.formats.ImageWriter

Constructs a new ImageWriter with the default list of writer classes from writers.txt.

ImageWriter(ClassList<IFormatWriter>) - Constructor for class loci.formats.ImageWriter

Constructs a new ImageWriter from the given list of writer classes.

imageX - Variable in class loci.formats.in.SDTInfo

4 subsequent fields valid only for Camera mode or FIFO_IMAGE mode.

imageY - Variable in class loci.formats.in.SDTInfo

ImagicReader - Class in loci.formats.in

ImagicReader is the file format reader for IMAGIC files.

ImagicReader() - Constructor for class loci.formats.in.ImagicReader

Constructs a new IMAGIC reader.

ImagingEnvironment - Class in ome.xml.model

ImagingEnvironment() - Constructor for class ome.xml.model.ImagingEnvironment

Default constructor.

ImagingEnvironment(Element, OMEModel) - Constructor for class ome.xml.model.ImagingEnvironment

Constructs ImagingEnvironment recursively from an XML DOM tree.

ImagingEnvironment(ImagingEnvironment) - Constructor for class ome.xml.model.ImagingEnvironment

Copy constructor.

ImarisHDFReader - Class in loci.formats.in

Reader for Bitplane Imaris 5.5 (HDF) files.

ImarisHDFReader() - Constructor for class loci.formats.in.ImarisHDFReader

Constructs a new Imaris HDF reader.

ImarisReader - Class in loci.formats.in

ImarisReader is the file format reader for Bitplane Imaris files.

ImarisReader() - Constructor for class loci.formats.in.ImarisReader

Constructs a new Imaris reader.

ImarisTiffReader - Class in loci.formats.in

ImarisTiffReader is the file format reader for Bitplane Imaris 3 files (TIFF variant).

ImarisTiffReader() - Constructor for class loci.formats.in.ImarisTiffReader

Constructs a new Imaris TIFF reader.

IMB_C - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

IMB_IPR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

IMB_UnkC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

IMB_VERS - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

Image Header Box Fields

IMetadata - Interface in loci.formats.meta

A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.

IMetadataConfigurable - Interface in loci.formats

Source code: Trac, Gitweb

ImgData - Interface in jj2000.j2k.image

This interface defines methods to access image attributes (width, height, number of components, etc.).

ImgDataAdapter - Class in jj2000.j2k.image

This class provides a default implementation of the methods in the 'ImgData' interface.

ImgDataAdapter(ImgData) - Constructor for class jj2000.j2k.image.ImgDataAdapter

Instantiates the ImgDataAdapter object specifying the ImgData source.

ImgDataConverter - Class in jj2000.j2k.image

This class is responsible of all data type conversions.

ImgDataConverter(BlkImgDataSrc, int) - Constructor for class jj2000.j2k.image.ImgDataConverter

Constructs a new ImgDataConverter object that operates on the specified source of image data.

ImgDataConverter(BlkImgDataSrc) - Constructor for class jj2000.j2k.image.ImgDataConverter

Constructs a new ImgDataConverter object that operates on the specified source of image data.

ImgDataJoiner - Class in jj2000.j2k.image

This class implements the ImgData interface and allows to obtain data from different sources.

ImgDataJoiner(BlkImgDataSrc[], int[]) - Constructor for class jj2000.j2k.image.ImgDataJoiner

Class constructor.

imgdatasrc - Variable in class jj2000.j2k.image.ImgDataAdapter

The ImgData source

imgH - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The image width on the hi-res reference grid

ImgReader - Class in jj2000.j2k.image.input

This is the generic interface to be implemented by all image file (or other resource) readers for different image file formats.

ImgReader() - Constructor for class jj2000.j2k.image.input.ImgReader

ImgReaderPGM - Class in jj2000.j2k.image.input

This class implements the ImgData interface for reading 8 bit unsigned data from a binary PGM file.

ImgReaderPGM(File) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM

Creates a new PGM file reader from the specified file.

ImgReaderPGM(String) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM

Creates a new PGM file reader from the specified file name.

ImgReaderPGM(RandomAccessFile) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM

Creates a new PGM file reader from the specified RandomAccessFile object.

imgW - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The image width on the hi-res reference grid

IMinMaxStore - Interface in loci.formats.meta

Interface for consumers of minima and maxima pixel intensities across a given wavelength.

Immersion - Enum in ome.xml.model.enums

ImmersionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Immersion.

ImmersionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ImmersionEnumHandler

IMODReader - Class in loci.formats.in

Reader for IMOD binary files.

IMODReader() - Constructor for class loci.formats.in.IMODReader

Constructs a new IMOD reader.

importData(JComponent, Transferable) - Method in class loci.plugins.shortcut.ShortcutTransferHandler

Importer - Class in loci.plugins.in

Core logic for the Bio-Formats Importer ImageJ plugin.

Importer(LociImporter) - Constructor for class loci.plugins.in.Importer

ImporterDialog - Class in loci.plugins.in

Abstract superclass of importer dialogs.

ImporterDialog(ImportProcess) - Constructor for class loci.plugins.in.ImporterDialog

ImporterMetadata - Class in loci.plugins.in

Helper class for storing original metadata key/value pairs.

ImporterMetadata(IFormatReader, ImportProcess, boolean) - Constructor for class loci.plugins.in.ImporterMetadata

ImporterOptions - Class in loci.plugins.in

Helper class for managing Bio-Formats Importer options.

ImporterOptions() - Constructor for class loci.plugins.in.ImporterOptions

ImporterPrompter - Class in loci.plugins.in

Helper class for presenting the user with dialog boxes for configuring importer options.

ImporterPrompter(ImportProcess) - Constructor for class loci.plugins.in.ImporterPrompter

importIds(int[]) - Method in class loci.formats.ome.OmeisImporter

Deprecated.

Attempts to import the given file IDs using Bio-Formats, as a single group.

ImportProcess - Class in loci.plugins.in

Manages the import preparation process.

ImportProcess() - Constructor for class loci.plugins.in.ImportProcess

ImportProcess(ImporterOptions) - Constructor for class loci.plugins.in.ImportProcess

ImportStep - Enum in loci.plugins.in

An enumeration of the steps in the import preparation process.

IMPROVISION_MAGIC_STRING - Static variable in class loci.formats.in.ImprovisionTiffReader

ImprovisionTiffReader - Class in loci.formats.in

ImprovisionTiffReader is the file format reader for Improvision TIFF files.

ImprovisionTiffReader() - Constructor for class loci.formats.in.ImprovisionTiffReader

ImspectorReader - Class in loci.formats.in

ImspectorReader is the file format reader for Imspector .msr files.

ImspectorReader() - Constructor for class loci.formats.in.ImspectorReader

Constructs a new Imspector reader.

in - Variable in class loci.formats.FormatReader

Current file.

in - Variable in class loci.formats.gui.ImageViewer

in - Variable in class loci.formats.out.TiffWriter

Input stream to use when overwriting data.

in - Variable in class loci.formats.tiff.TiffParser

Input source from which to parse TIFF data.

in - Variable in class loci.formats.tools.AmiraParameters

inCache - Variable in class loci.formats.cache.Cache

Whether each position is currently supposed to be cached.

InCell3000Reader - Class in loci.formats.in

InCell3000Reader is the file format reader for InCell 3000.

InCell3000Reader() - Constructor for class loci.formats.in.InCell3000Reader

Constructs a new InCell 3000 reader.

INCELL_MAGIC_STRING - Static variable in class loci.formats.in.InCellReader

InCellReader - Class in loci.formats.in

InCellReader is the file format reader for InCell 1000/2000 datasets.

InCellReader() - Constructor for class loci.formats.in.InCellReader

Constructs a new InCell 1000/2000 reader.

incr - Variable in class loci.formats.in.SDTInfo

incrementShapeCount() - Method in class loci.poi.ddf.EscherDgRecord

incrementShapeId() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster

indentXML(String) - Static method in class loci.common.xml.XMLTools

Indents XML to be more readable.

indentXML(String, int) - Static method in class loci.common.xml.XMLTools

Indents XML by the given spacing to be more readable.

indentXML(String, boolean) - Static method in class loci.common.xml.XMLTools

Indents XML to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.

indentXML(String, int, boolean) - Static method in class loci.common.xml.XMLTools

Indents XML by the given spacing to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.

indentXML(String) - Static method in class ome.scifio.xml.XMLTools

Indents XML to be more readable.

indentXML(String, int) - Static method in class ome.scifio.xml.XMLTools

Indents XML by the given spacing to be more readable.

indentXML(String, boolean) - Static method in class ome.scifio.xml.XMLTools

Indents XML to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.

indentXML(String, int, boolean) - Static method in class ome.scifio.xml.XMLTools

Indents XML by the given spacing to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.

index - Variable in class loci.formats.cache.CacheEvent

Relevant index to the event, if any.

index - Variable in class loci.plugins.util.SearchableWindow

index - Static variable in class loci.poi.hssf.util.HSSFColor.AQUA

index - Static variable in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

index - Static variable in class loci.poi.hssf.util.HSSFColor.BLACK

index - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

index - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.BROWN

index - Static variable in class loci.poi.hssf.util.HSSFColor.CORAL

index - Static variable in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

index - Static variable in class loci.poi.hssf.util.HSSFColor.GOLD

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

index - Static variable in class loci.poi.hssf.util.HSSFColor.INDIGO

index - Static variable in class loci.poi.hssf.util.HSSFColor.LAVENDER

index - Static variable in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

index - Static variable in class loci.poi.hssf.util.HSSFColor.LIME

index - Static variable in class loci.poi.hssf.util.HSSFColor.MAROON

index - Static variable in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.ORANGE

index - Static variable in class loci.poi.hssf.util.HSSFColor.ORCHID

index - Static variable in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.PINK

index - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM

index - Static variable in class loci.poi.hssf.util.HSSFColor.RED

index - Static variable in class loci.poi.hssf.util.HSSFColor.ROSE

index - Static variable in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

index - Static variable in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

index - Static variable in class loci.poi.hssf.util.HSSFColor.TAN

index - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL

index - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE

index - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET

index - Static variable in class loci.poi.hssf.util.HSSFColor.WHITE

index - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW

Index16ColorModel - Class in loci.formats.gui

ColorModel that handles 16 bits per channel lookup tables.

Index16ColorModel(int, int, short[][], boolean) - Constructor for class loci.formats.gui.Index16ColorModel

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.PINK

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET

index2 - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW

INDEX_EXTERNAL - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

index_start - Variable in class mdbtools.libmdb.MdbTableDef

indexed - Variable in class loci.formats.CoreMetadata

Indicates whether or not the images are stored as indexed color.

indexedAsRGB - Variable in class loci.formats.FormatReader

Whether or not MetadataStore sets C = 3 for indexed color images.

indexedToRGB(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Converts an indexed color BufferedImage to an RGB BufferedImage.

indexedToRGB(byte[][], byte[]) - Static method in class loci.formats.ImageTools

Converts a LUT and an array of indices into an array of RGB tuples.

indexedToRGB(short[][], byte[], boolean) - Static method in class loci.formats.ImageTools

Converts a LUT and an array of indices into an array of RGB tuples.

indexOf(int[], int) - Static method in class loci.common.DataTools

Returns the index of the first occurrence of the given value in the given array.

indexOf(Object[], Object) - Static method in class loci.common.DataTools

Returns the index of the first occurrence of the given value in the given Object array.

indexOf(Object) - Method in class loci.common.IniList

indexOf(double) - Method in class loci.poi.util.DoubleList

Returns the index in this list of the first occurrence of the specified element, or -1 if this list does not contain this element.

indexOf(int) - Method in class loci.poi.util.IntList

Returns the index in this list of the first occurrence of the specified element, or -1 if this list does not contain this element.

indexOf(short) - Method in class loci.poi.util.ShortList

Returns the index in this list of the first occurrence of the specified element, or -1 if this list does not contain this element.

indexOf(int[], int) - Static method in class ome.scifio.common.DataTools

Returns the index of the first occurrence of the given value in the given array.

indexOf(Object[], Object) - Static method in class ome.scifio.common.DataTools

Returns the index of the first occurrence of the given value in the given Object array.

IndexRecord - Class in loci.poi.hssf.record

Title: Index Record

IndexRecord() - Constructor for class loci.poi.hssf.record.IndexRecord

IndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.IndexRecord

Constructs an Index record and sets its fields appropriately.

INDIVIDUAL_JARS - Static variable in class loci.formats.UpgradeChecker

Names of the individual JARs.

INFO - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

info - Variable in class loci.formats.in.OMETiffReader

Mapping from series and plane numbers to files and IFD entries.

info - Variable in class loci.formats.in.SDTInfo

info - Variable in class loci.formats.in.SDTReader

Object containing SDT header information.

info - Variable in class loci.plugins.prefs.Option

Documentation about the option, in HTML.

INFO - Static variable in class loci.poi.util.POILogger

INFO_DEFAULT - Static variable in class loci.plugins.in.MainDialog

Initial message to display in help text box.

INFO_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord

INFO_TABLE - Static variable in class loci.formats.in.LiFlimReader

infoLength - Variable in class loci.formats.in.SDTInfo

Length of the info part.

infoOffs - Variable in class loci.formats.in.SDTInfo

Offset of the info part which contains general text information (Title, date, time, contents etc.).

infoPane - Variable in class loci.plugins.in.MainDialog

infoTable - Variable in class loci.plugins.in.MainDialog

INI_DEFAULT - Static variable in class loci.plugins.prefs.Option

INI key indicating option's default value.

INI_INFO - Static variable in class loci.plugins.prefs.Option

INI key indicating option's info.

INI_KEY - Static variable in class loci.plugins.prefs.Option

INI key indicating option's key.

INI_LABEL - Static variable in class loci.plugins.prefs.Option

INI key indicating option's label.

INI_POSSIBLE - Static variable in class loci.plugins.prefs.StringOption

INI key indicating option's possible values.

INI_SAVE - Static variable in class loci.plugins.prefs.Option

INI key indicating whether option should be saved to prefs file.

INI_TYPE - Static variable in class loci.plugins.prefs.OptionsList

INI key indicating option's type.

IniList - Class in loci.common

A legacy delegator class for ome.scifio.common.IniList.

IniList() - Constructor for class loci.common.IniList

IniList - Class in ome.scifio.common

A data structure containing a parsed list of INI key/value tables.

IniList() - Constructor for class ome.scifio.common.IniList

IniParser - Class in loci.common

A legacy delegator class for ome.scifio.common.IniParser.

IniParser() - Constructor for class loci.common.IniParser

IniParser - Class in ome.scifio.common

A simple parser for INI configuration files.

IniParser() - Constructor for class ome.scifio.common.IniParser

init(String) - Method in class loci.tests.testng.FileHandleTest

init(String, String) - Method in class loci.tests.testng.OpenBytesPerformanceTest

init(String) - Method in class loci.tests.testng.SubResolutionTest

INIT_EL_COPYING - Static variable in class jj2000.j2k.util.ArrayUtil

The number of elements to copy initially in an optimized array copy

IniTable - Class in loci.common

A legacy delegator class for ome.scifio.common.IniTable.

IniTable() - Constructor for class loci.common.IniTable

IniTable - Class in ome.scifio.common

A data structure containing a parsed list of INI key/value tables.

IniTable() - Constructor for class ome.scifio.common.IniTable

initBitBuf() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Initialize bit buffer machinery.

initChilds() - Method in class jj2000.j2k.wavelet.Subband

Initializes the childs of this node with the correct values.

initClass() - Method in class loci.formats.gui.LegacyQTTools

Initializes the class.

initCoreMetadata(int) - Method in class loci.formats.in.LeicaSCNReader

initExtraMetadata() - Method in class loci.formats.in.DeltavisionReader

initFile(String) - Method in class loci.formats.FileStitcher

Initializes the given file or file pattern.

initFile(String) - Method in class loci.formats.FormatReader

Initializes the given file (parsing header information, etc.).

initFile(String) - Method in class loci.formats.in.AFIReader

initFile(String) - Method in class loci.formats.in.AIMReader

initFile(String) - Method in class loci.formats.in.AliconaReader

initFile(String) - Method in class loci.formats.in.AmiraReader

initFile(String) - Method in class loci.formats.in.AnalyzeReader

initFile(String) - Method in class loci.formats.in.APLReader

initFile(String) - Method in class loci.formats.in.APNGReader

initFile(String) - Method in class loci.formats.in.ARFReader

initFile(String) - Method in class loci.formats.in.AVIReader

initFile(String) - Method in class loci.formats.in.BaseTiffReader

initFile(String) - Method in class loci.formats.in.BDReader

initFile(String) - Method in class loci.formats.in.BioRadGelReader

initFile(String) - Method in class loci.formats.in.BioRadReader

initFile(String) - Method in class loci.formats.in.BioRadSCNReader

initFile(String) - Method in class loci.formats.in.BMPReader

initFile(String) - Method in class loci.formats.in.BrukerReader

initFile(String) - Method in class loci.formats.in.BurleighReader

initFile(String) - Method in class loci.formats.in.CanonRawReader

initFile(String) - Method in class loci.formats.in.CellomicsReader

initFile(String) - Method in class loci.formats.in.CellSensReader

initFile(String) - Method in class loci.formats.in.CellVoyagerReader

initFile(String) - Method in class loci.formats.in.CellWorxReader

initFile(String) - Method in class loci.formats.in.DeltavisionReader

initFile(String) - Method in class loci.formats.in.DicomReader

initFile(String) - Method in class loci.formats.in.DNGReader

initFile(String) - Method in class loci.formats.in.Ecat7Reader

initFile(String) - Method in class loci.formats.in.EPSReader

initFile(String) - Method in class loci.formats.in.FakeReader

initFile(String) - Method in class loci.formats.in.FEIReader

initFile(String) - Method in class loci.formats.in.FitsReader

initFile(String) - Method in class loci.formats.in.FlexReader

initFile(String) - Method in class loci.formats.in.FujiReader

initFile(String) - Method in class loci.formats.in.FV1000Reader

initFile(String) - Method in class loci.formats.in.GatanDM2Reader

initFile(String) - Method in class loci.formats.in.GatanReader

initFile(String) - Method in class loci.formats.in.GIFReader

initFile(String) - Method in class loci.formats.in.HamamatsuVMSReader

initFile(String) - Method in class loci.formats.in.HISReader

initFile(String) - Method in class loci.formats.in.HitachiReader

initFile(String) - Method in class loci.formats.in.HRDGDFReader

initFile(String) - Method in class loci.formats.in.ICSReader

initFile(String) - Method in class loci.formats.in.ImageIOReader

initFile(String) - Method in class loci.formats.in.ImagicReader

initFile(String) - Method in class loci.formats.in.ImarisHDFReader

initFile(String) - Method in class loci.formats.in.ImarisReader

initFile(String) - Method in class loci.formats.in.ImarisTiffReader

initFile(String) - Method in class loci.formats.in.IMODReader

initFile(String) - Method in class loci.formats.in.ImspectorReader

initFile(String) - Method in class loci.formats.in.InCell3000Reader

initFile(String) - Method in class loci.formats.in.InCellReader

initFile(String) - Method in class loci.formats.in.INRReader

initFile(String) - Method in class loci.formats.in.InveonReader

initFile(String) - Method in class loci.formats.in.IPLabReader

initFile(String) - Method in class loci.formats.in.IPWReader

initFile(String) - Method in class loci.formats.in.IvisionReader

initFile(String) - Method in class loci.formats.in.JEOLReader

initFile(String) - Method in class loci.formats.in.JPEG2000Reader

initFile(String) - Method in class loci.formats.in.JPXReader

initFile(String) - Method in class loci.formats.in.KhorosReader

initFile(String) - Method in class loci.formats.in.KodakReader

initFile(String) - Method in class loci.formats.in.L2DReader

initFile(String) - Method in class loci.formats.in.LegacyND2Reader

initFile(String) - Method in class loci.formats.in.LegacyQTReader

initFile(String) - Method in class loci.formats.in.LeicaReader

initFile(String) - Method in class loci.formats.in.LiFlimReader

initFile(String) - Method in class loci.formats.in.LIFReader

initFile(String) - Method in class loci.formats.in.LIMReader

initFile(String) - Method in class loci.formats.in.MetamorphReader

initFile(String) - Method in class loci.formats.in.MetamorphTiffReader

initFile(String) - Method in class loci.formats.in.MIASReader

initFile(String) - Method in class loci.formats.in.MicromanagerReader

initFile(String) - Method in class loci.formats.in.MINCReader

initFile(String) - Method in class loci.formats.in.MinimalTiffReader

initFile(String) - Method in class loci.formats.in.MNGReader

initFile(String) - Method in class loci.formats.in.MolecularImagingReader

initFile(String) - Method in class loci.formats.in.MRCReader

initFile(String) - Method in class loci.formats.in.MRWReader

initFile(String) - Method in class loci.formats.in.NAFReader

initFile(String) - Method in class loci.formats.in.NativeND2Reader

initFile(String) - Method in class loci.formats.in.NativeQTReader

initFile(String) - Method in class loci.formats.in.NDPIReader

initFile(String) - Method in class loci.formats.in.NDPISReader

initFile(String) - Method in class loci.formats.in.NiftiReader

initFile(String) - Method in class loci.formats.in.NikonReader

initFile(String) - Method in class loci.formats.in.NRRDReader

initFile(String) - Method in class loci.formats.in.OBFReader

initFile(String) - Method in class loci.formats.in.OMETiffReader

initFile(String) - Method in class loci.formats.in.OMEXMLReader

initFile(String) - Method in class loci.formats.in.OpenlabRawReader

initFile(String) - Method in class loci.formats.in.OpenlabReader

initFile(String) - Method in class loci.formats.in.OperettaReader

initFile(String) - Method in class loci.formats.in.OxfordInstrumentsReader

initFile(String) - Method in class loci.formats.in.PCIReader

initFile(String) - Method in class loci.formats.in.PCORAWReader

initFile(String) - Method in class loci.formats.in.PCXReader

initFile(String) - Method in class loci.formats.in.PDSReader

initFile(String) - Method in class loci.formats.in.PerkinElmerReader

initFile(String) - Method in class loci.formats.in.PGMReader

initFile(String) - Method in class loci.formats.in.PhotoshopTiffReader

initFile(String) - Method in class loci.formats.in.PictReader

initFile(String) - Method in class loci.formats.in.PovrayReader

initFile(String) - Method in class loci.formats.in.PrairieReader

initFile(String) - Method in class loci.formats.in.PSDReader

initFile(String) - Method in class loci.formats.in.QuesantReader

initFile(String) - Method in class loci.formats.in.RHKReader

initFile(String) - Method in class loci.formats.in.SBIGReader

initFile(String) - Method in class loci.formats.in.ScanrReader

initFile(String) - Method in class loci.formats.in.ScreenReader

initFile(String) - Method in class loci.formats.in.SDTReader

initFile(String) - Method in class loci.formats.in.SeikoReader

initFile(String) - Method in class loci.formats.in.SIFReader

initFile(String) - Method in class loci.formats.in.SlidebookReader

initFile(String) - Method in class loci.formats.in.SMCameraReader

initFile(String) - Method in class loci.formats.in.SpiderReader

initFile(String) - Method in class loci.formats.in.TargaReader

initFile(String) - Method in class loci.formats.in.TCSReader

initFile(String) - Method in class loci.formats.in.TextReader

initFile(String) - Method in class loci.formats.in.TiffJAIReader

initFile(String) - Method in class loci.formats.in.TileJPEGReader

initFile(String) - Method in class loci.formats.in.TillVisionReader

initFile(String) - Method in class loci.formats.in.TopometrixReader

initFile(String) - Method in class loci.formats.in.TrestleReader

initFile(String) - Method in class loci.formats.in.UBMReader

initFile(String) - Method in class loci.formats.in.UnisokuReader

initFile(String) - Method in class loci.formats.in.VarianFDFReader

initFile(String) - Method in class loci.formats.in.VGSAMReader

initFile(String) - Method in class loci.formats.in.VisitechReader

initFile(String) - Method in class loci.formats.in.VolocityClippingReader

initFile(String) - Method in class loci.formats.in.VolocityReader

initFile(String) - Method in class loci.formats.in.WATOPReader

initFile(String) - Method in class loci.formats.in.WlzReader

initFile(String) - Method in class loci.formats.in.ZeissCZIReader

initFile(String) - Method in class loci.formats.in.ZeissLSMReader

initFile(String) - Method in class loci.formats.in.ZeissTIFFReader

initFile(String) - Method in class loci.formats.in.ZeissZVIReader

initFile(String) - Method in class loci.formats.in.ZipReader

initFile(String) - Method in class loci.ome.io.OMEReader

initFile(String) - Method in class loci.ome.io.OmeroReader

initFileMain(String) - Method in class loci.formats.in.BaseZeissReader

INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFRow

INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

Used for compile-time optimization.

INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

used for compile-time performance/memory optimization.

INITIAL_LENGTH - Static variable in class ome.scifio.io.ByteArrayHandle

Initial length of a new file.

initialiseCRC() - Method in class loci.common.CRC

initialiseCRC() - Method in class ome.scifio.common.CRC

initialize(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

initialize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Initializes the layers array.

initialize() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Initializes the rate allocation points, taking into account header overhead and such.

initialize(String, int) - Method in class loci.formats.codec.JPEGTileDecoder

initialize(RandomAccessInputStream, int) - Method in class loci.formats.codec.JPEGTileDecoder

initialize(RandomAccessInputStream, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder

initialize(RandomAccessInputStream, int, int) - Method in interface loci.formats.services.JPEGTurboService

initialize(RandomAccessInputStream, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl

initialize(InputStream) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.lwfDecoder(InputStream, String, String).

initialize(InputStream) - Method in class loci.formats.services.LuraWaveServiceImpl

initialize(String) - Method in interface loci.formats.services.MDBService

Prepare the given .mdb file for reading.

initialize(String) - Method in class loci.formats.services.MDBServiceImpl

initialize(String) - Method in interface loci.formats.services.MetakitService

initialize(RandomAccessInputStream) - Method in interface loci.formats.services.MetakitService

initialize(String) - Method in class loci.formats.services.MetakitServiceImpl

initialize(RandomAccessInputStream) - Method in class loci.formats.services.MetakitServiceImpl

initialize(String) - Method in interface loci.formats.services.POIService

Construct a new POI filesystem around the given file.

initialize(RandomAccessInputStream) - Method in interface loci.formats.services.POIService

Construct a new POI filesystem around the given stream.

initialize(String) - Method in class loci.formats.services.POIServiceImpl

initialize(RandomAccessInputStream) - Method in class loci.formats.services.POIServiceImpl

initialize(String) - Method in class loci.poi.util.CommonsLogger

initialize(String) - Method in class loci.poi.util.NullLogger

initialize(String) - Method in class loci.poi.util.POILogger

initialize(String) - Method in class loci.poi.util.SystemOutLogger

initialized - Variable in class loci.formats.FormatWriter

Whether each plane in each series of the current file has been prepped for writing.

initialized - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating this class has been initialized.

initializeFromStream(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Initialize the string table.

initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Initialize the string table.

initImage() - Method in class loci.formats.in.ImageIOReader

initJPEGWriter(boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Initializes the JPEGWriter and JPEGParam instance variables.

initLicenseCode() - Static method in class loci.plugins.util.LuraWave

Reads LuraWave license code from ImageJ preferences, if available.

initMetadata() - Method in class loci.formats.in.BaseTiffReader

Populates the metadata hashtable and metadata store.

initMetadata() - Method in class loci.formats.in.GelReader

initMetadata(int) - Method in class loci.formats.in.ZeissLSMReader

initMetadataStore() - Method in class loci.formats.in.BaseTiffReader

Populates the metadata store using the data parsed in BaseTiffReader.initStandardMetadata() along with some further parsing done in the method itself.

initMetadataStore() - Method in class loci.formats.in.FEITiffReader

initMetadataStore() - Method in class loci.formats.in.FluoviewReader

initMetadataStore() - Method in class loci.formats.in.ImaconReader

initMetadataStore() - Method in class loci.formats.in.ImprovisionTiffReader

initMetadataStore() - Method in class loci.formats.in.JPKReader

initMetadataStore() - Method in class loci.formats.in.LeicaSCNReader

initMetadataStore() - Method in class loci.formats.in.LEOReader

initMetadataStore() - Method in class loci.formats.in.NDPIReader

initMetadataStore() - Method in class loci.formats.in.NikonElementsTiffReader

initMetadataStore() - Method in class loci.formats.in.NikonTiffReader

initMetadataStore() - Method in class loci.formats.in.PyramidTiffReader

initMetadataStore() - Method in class loci.formats.in.SimplePCITiffReader

initMetadataStore() - Method in class loci.formats.in.SISReader

initMetadataStore() - Method in class loci.formats.in.SlidebookTiffReader

initMetadataStore() - Method in class loci.formats.in.SVSReader

initMetadataStore() - Method in class loci.formats.in.TiffReader

initMetadataStore() - Method in class loci.formats.in.TrestleReader

initMinMax() - Method in class loci.formats.MinMaxCalculator

Ensures internal min/max variables are initialized properly.

initPixels() - Method in class loci.formats.in.DeltavisionReader

initProgressWatch(int, int, String) - Method in interface jj2000.j2k.util.ProgressWatch

Initialize the progress watching process

initReader(int, int) - Method in class loci.formats.FileStitcher

initStandardMetadata() - Method in class loci.formats.in.BaseTiffReader

Parses standard metadata.

initStandardMetadata() - Method in class loci.formats.in.DNGReader

initStandardMetadata() - Method in class loci.formats.in.FEITiffReader

initStandardMetadata() - Method in class loci.formats.in.FluoviewReader

initStandardMetadata() - Method in class loci.formats.in.ImaconReader

initStandardMetadata() - Method in class loci.formats.in.ImprovisionTiffReader

initStandardMetadata() - Method in class loci.formats.in.JPKReader

initStandardMetadata() - Method in class loci.formats.in.LeicaSCNReader

initStandardMetadata() - Method in class loci.formats.in.LEOReader

initStandardMetadata() - Method in class loci.formats.in.MetamorphReader

initStandardMetadata() - Method in class loci.formats.in.NDPIReader

initStandardMetadata() - Method in class loci.formats.in.NikonElementsTiffReader

initStandardMetadata() - Method in class loci.formats.in.NikonReader

initStandardMetadata() - Method in class loci.formats.in.NikonTiffReader

initStandardMetadata() - Method in class loci.formats.in.PyramidTiffReader

initStandardMetadata() - Method in class loci.formats.in.SEQReader

initStandardMetadata() - Method in class loci.formats.in.SimplePCITiffReader

initStandardMetadata() - Method in class loci.formats.in.SISReader

initStandardMetadata() - Method in class loci.formats.in.SlidebookTiffReader

initStandardMetadata() - Method in class loci.formats.in.SVSReader

initStandardMetadata() - Method in class loci.formats.in.TiffReader

initStandardMetadata() - Method in class loci.formats.in.TrestleReader

initSubbandsFields(int, SubbandSyn) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Initialises subbands fields, such as code-blocks dimension and number of magnitude bits, in the subband tree.

initTileComp(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Load options, length calculation type and termination type for each tile-component.

initVars(String) - Method in class loci.formats.in.BaseZeissReader

initVars(String) - Method in class loci.formats.in.ZeissTIFFReader

initVars(String) - Method in class loci.formats.in.ZeissZVIReader

IniWriter - Class in loci.common

A legacy delegator class for ome.scifio.common.IniWriter.

IniWriter() - Constructor for class loci.common.IniWriter

IniWriter - Class in ome.scifio.common

A simple writer for INI configuration files.

IniWriter() - Constructor for class ome.scifio.common.IniWriter

INK_NAMES - Static variable in class loci.formats.tiff.IFD

INK_SET - Static variable in class loci.formats.tiff.IFD

INK_SET_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "InkSet" tag.

INK_SET_NOT_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "InkSet" tag.

INNER - Static variable in class mdbtools.dbengine.sql.Join

inputOrder - Variable in class loci.formats.SwappableMetadata

Order in which dimensions are stored.

InputStreamAdapter - Class in com.sun.media.imageioimpl.plugins.clib

InputStreamAdapter(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

INRReader - Class in loci.formats.in

INRReader is the file format reader for INR files.

INRReader() - Constructor for class loci.formats.in.INRReader

Constructs a new INR reader.

insert(ImageProcessor, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

insertBefore(Node, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

insertCell(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

insertChartRecord() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Test only.

insertChartRecords(List) - Method in class loci.poi.hssf.usermodel.HSSFSheet

insertColumn(ColumnInfoRecord) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Inserts a column into the aggregate (at the end of the list).

insertColumn(int, ColumnInfoRecord) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Inserts a column into the aggregate (at the position specified by idx.

insertNode(PaletteBuilder.ColorNode, Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

insertRow(RowRecord) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

insertSST() - Method in class loci.poi.hssf.model.Workbook

use this function to add a Shared String Table to an existing sheet (say generated by a different java api) without an sst....

insertUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets

inspectViewable(Object, boolean, int, String) - Static method in class loci.poi.poifs.dev.POIFSViewEngine

Inspect an object that may be viewable, and drill down if told to

install(String, String) - Method in class loci.formats.UpgradeChecker

Download and install a JAR file from the given URL.

install(String) - Static method in class loci.plugins.Updater

Install the tools bundle which can be retrieved from the specified path.

installIndividualJars(String, String) - Method in class loci.formats.UpgradeChecker

Download and install all of the individual JAR files into the given directory.

InstallWizard - Class in loci.plugins.config

A wizard for walking users through installation of third party libraries and plugins used by the LOCI plugins.

InstallWizard() - Constructor for class loci.plugins.config.InstallWizard

Instrument - Class in ome.xml.model

Instrument() - Constructor for class ome.xml.model.Instrument

Default constructor.

Instrument(Element, OMEModel) - Constructor for class ome.xml.model.Instrument

Constructs Instrument recursively from an XML DOM tree.

Instrument(Instrument) - Constructor for class ome.xml.model.Instrument

Copy constructor.

InstrumentRef - Class in ome.xml.model

InstrumentRef() - Constructor for class ome.xml.model.InstrumentRef

Default constructor.

InstrumentRef(Element, OMEModel) - Constructor for class ome.xml.model.InstrumentRef

Constructs InstrumentRef recursively from an XML DOM tree.

InstrumentRef(InstrumentRef) - Constructor for class ome.xml.model.InstrumentRef

Copy constructor.

INT16 - Static variable in class loci.formats.FormatTools

Identifies the INT16 data type used to store pixel values.

INT32 - Static variable in class loci.formats.FormatTools

Identifies the INT32 data type used to store pixel values.

INT8 - Static variable in class loci.formats.FormatTools

Identifies the INT8 data type used to store pixel values.

INT_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

intArraySet(int[], int) - Static method in class jj2000.j2k.util.ArrayUtil

Reinitializes an int array to the given value in an optimized way.

IntegerField - Class in loci.poi.util

representation of an integer (32-bit) field at a fixed location within a byte array

IntegerField(int) - Constructor for class loci.poi.util.IntegerField

construct the IntegerField with its offset into its containing byte array

IntegerField(int, int) - Constructor for class loci.poi.util.IntegerField

construct the IntegerField with its offset into its containing byte array and initialize its value

IntegerField(int, byte[]) - Constructor for class loci.poi.util.IntegerField

Construct the IntegerField with its offset into its containing byte array and initialize its value from its byte array

IntegerField(int, int, byte[]) - Constructor for class loci.poi.util.IntegerField

construct the IntegerField with its offset into its containing byte array, initialize its value, and write the value to a byte array

IntegerSpec - Class in jj2000.j2k

This class extends ModuleSpec and is responsible of Integer specifications for each tile-component.

IntegerSpec(int, int, byte) - Constructor for class jj2000.j2k.IntegerSpec

Constructs a new 'IntegerSpec' for the specified number of tiles and components and with allowed type of specifications.

IntegerSpec(int, int, byte, J2KImageWriteParamJava, String, String) - Constructor for class jj2000.j2k.IntegerSpec

Constructs a new 'IntegerSpec' for the specified number of tiles and components, the allowed specifications type instance.

INTELLECTUAL_PROPERTY_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

intensity - Variable in class loci.formats.in.SDTReader

Whether to combine lifetime bins into single intensity image planes.

intent - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

intercept(List<IMethodInstance>, ITestContext) - Method in class loci.tests.testng.OrderingListener

InterfaceEndRecord - Class in loci.poi.hssf.record

Title: Interface End Record

InterfaceEndRecord() - Constructor for class loci.poi.hssf.record.InterfaceEndRecord

InterfaceEndRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.InterfaceEndRecord

Constructs an InterfaceEnd record and sets its fields appropriately.

InterfaceHdrRecord - Class in loci.poi.hssf.record

Title: Interface Header Record

InterfaceHdrRecord() - Constructor for class loci.poi.hssf.record.InterfaceHdrRecord

InterfaceHdrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.InterfaceHdrRecord

Constructs an Codepage record and sets its fields appropriately.

interlaced - Variable in class loci.formats.codec.MJPBCodecOptions

Indicates whether or not channels are interlaced.

interlaceFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

interleaved - Variable in class loci.formats.codec.CodecOptions

Indicates whether or not channels are interleaved.

interleaved - Variable in class loci.formats.CoreMetadata

True if channels are stored RGBRGBRGB...; false if channels are stored RRR...GGG...BBB...

interleaved - Variable in class loci.formats.FormatWriter

Whether the channels in an RGB image are interleaved.

INTEROPERABILITY_INDEX_R98 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

A value to be used with the "InteroperabilityIndex" tag.

INTEROPERABILITY_INDEX_THM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

A value to be used with the "InteroperabilityIndex" tag.

interpolate(short[], byte[], int[], int, int, boolean) - Static method in class loci.formats.ImageTools

intersection(Region) - Method in class loci.common.Region

intersection(Region) - Method in class ome.scifio.common.Region

Returns a Region representing the intersection of this Region with the given Region.

IntersectionPtg - Class in loci.poi.hssf.record.formula

IntersectionPtg() - Constructor for class loci.poi.hssf.record.formula.IntersectionPtg

IntersectionPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.IntersectionPtg

intersects(Region) - Method in class ome.scifio.common.Region

Returns true if this region intersects the given region.

intFormat(int, int) - Static method in class loci.formats.in.MetamorphReader

Formats an integer value with leading 0s if needed.

intFormatMax(int, int) - Static method in class loci.formats.in.MetamorphReader

Formats an integer with leading 0 using maximum sequence number.

IntList - Class in loci.poi.util

A List of int's; as full an implementation of the java.util.List interface as possible, with an eye toward minimal creation of objects the mimicry of List is as follows: if possible, operations designated 'optional' in the List interface are attempted wherever the List interface refers to an Object, substitute int wherever the List interface refers to a Collection or List, substitute IntList the mimicry is not perfect, however: operations involving Iterators or ListIterators are not supported remove(Object) becomes removeValue to distinguish it from remove(int index) subList is not supported

IntList() - Constructor for class loci.poi.util.IntList

create an IntList of default size

IntList(int) - Constructor for class loci.poi.util.IntList

IntList(IntList) - Constructor for class loci.poi.util.IntList

create a copy of an existing IntList

IntList(int, int) - Constructor for class loci.poi.util.IntList

create an IntList with a predefined initial size

IntList2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of integers.

IntList2d() - Constructor for class loci.poi.util.IntList2d

IntMapper - Class in loci.poi.util

A List of objects that are indexed AND keyed by an int; also allows for getting the index of a value in the list

IntMapper() - Constructor for class loci.poi.util.IntMapper

create an IntMapper of default size

IntMapper(int) - Constructor for class loci.poi.util.IntMapper

IntPtg - Class in loci.poi.hssf.record.formula

Integer (short intger) Stores a (java) short value in a formula

IntPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.IntPtg

IntPtg(String) - Constructor for class loci.poi.hssf.record.formula.IntPtg

intsToBytes(int[], boolean) - Static method in class loci.common.DataTools

Translates an array of int values into an array of byte values.

intsToBytes(int[], boolean) - Static method in class ome.scifio.common.DataTools

Translates an array of int values into an array of byte values.

intToBytes(int, boolean) - Static method in class loci.common.DataTools

Translates the int value into an array of four bytes.

intToBytes(int, boolean) - Static method in class ome.scifio.common.DataTools

Translates the int value into an array of four bytes.

intValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as an int.

INV_ICT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Identifier for the Inverse Irreversible Component Transformation (INV_ICT).

INV_RCT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Identifier for the Inverse Reversible Component Transformation (INV_RCT).

INVALID_LICENSE_MSG - Static variable in class loci.formats.services.LuraWaveServiceImpl

Message to display if an invalid LuraWave license code is given.

invalidateCache() - Static method in class loci.common.CaseInsensitiveLocation

Remove (invalidate) cached content all directories.

invalidateCache(File) - Static method in class loci.common.CaseInsensitiveLocation

Remove (invalidate) cached content for the specified directory.

invalidateCache() - Static method in class ome.scifio.io.CaseInsensitiveLocation

Remove (invalidate) cached content all directories.

invalidateCache(File) - Static method in class ome.scifio.io.CaseInsensitiveLocation

Remove (invalidate) cached content for the specified directory.

InvCompTransf - Class in jj2000.j2k.image.invcomptransf

This class apply inverse component transformations to the tiles depending on specification read from the codestream header.

InvCompTransf(BlkImgDataSrc, DecoderSpecs, int[]) - Constructor for class jj2000.j2k.image.invcomptransf.InvCompTransf

Constructs a new ForwCompTransf object that operates on the specified source of image data.

InveonReader - Class in loci.formats.in

InveonReader is the file format reader for Inveon files.

InveonReader() - Constructor for class loci.formats.in.InveonReader

Constructs a new Inveon reader.

inverseFill - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Whether bits are inserted in reverse order (TIFF FillOrder 2).

InverseWT - Class in jj2000.j2k.wavelet.synthesis

This abstract class extends the WaveletTransform one with the specifics of inverse wavelet transforms.

InverseWT(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InverseWT

Initializes this object with the given source of wavelet coefficients.

invert() - Method in class loci.plugins.util.RecordedImageProcessor

InvertedCMYKColorSpace - Class in com.sun.media.imageioimpl.common

Singleton class representing a simple, mathematically defined inverted CMYK color space.

invertLut() - Method in class loci.plugins.util.RecordedImageProcessor

invokeProtected(Object, String, Class<?>[], Object[]) - Method in class loci.utils.ProtectedMethodInvoker

This method attempts to invoke the provided methodName within the source object.

InvWT - Interface in jj2000.j2k.wavelet.synthesis

This interface extends the WaveletTransform with the specifics of inverse wavelet transforms.

InvWTAdapter - Class in jj2000.j2k.wavelet.synthesis

This class provides default implementation of the methods in the 'InvWT' interface.

InvWTAdapter(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Instantiates the 'InvWTAdapter' object using the specified 'MultiResImgData' source.

InvWTData - Interface in jj2000.j2k.wavelet.synthesis

This interface extends the MultiResImgData interface with the methods that are necessary for inverse wavelet data (i.e.

InvWTFull - Class in jj2000.j2k.wavelet.synthesis

This class implements the InverseWT with the full-page approach for int and float data.

InvWTFull(CBlkWTDataSrcDec, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTFull

Initializes this object with the given source of wavelet coefficients.

IOTester - Class in loci.tests

A class for testing RandomAccessInputStream's efficiency in various cases.

IOTester() - Constructor for class loci.tests.IOTester

IOUtils - Class in loci.poi.util

IPLabReader - Class in loci.formats.in

IPLabReader is the file format reader for IPLab (.IPL) files.

IPLabReader() - Constructor for class loci.formats.in.IPLabReader

Constructs a new IPLab reader.

IPW_MAGIC_BYTES - Static variable in class loci.formats.in.IPWReader

IPWReader - Class in loci.formats.in

IPWReader is the file format reader for Image-Pro Workspace (IPW) files.

IPWReader() - Constructor for class loci.formats.in.IPWReader

Constructs a new IPW reader.

IRandomAccess - Interface in loci.common

Legacy extension of ome.scifio.io.IRandomAccess.

IRandomAccess - Interface in ome.scifio.io

Interface for random access into structures (e.g., files or arrays).

IRandomAccessAdapter - Class in loci.common.adapter

As interfaces can not contain implementation, this class manages interface-level delegation between IRandomAccess and IRandomAccess

IRandomAccessAdapter() - Constructor for class loci.common.adapter.IRandomAccessAdapter

IRandomAccessAdapter.LegacyWrapper - Class in loci.common.adapter

This class can be used to wrap loci.common.IRandomAccess objects and be passed to API expecting an ome.scifio.io.IRandomAccess object.

IRandomAccessAdapter.LegacyWrapper(IRandomAccess) - Constructor for class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper

IRandomAccessAdapter.ModernWrapper - Class in loci.common.adapter

This class can be used to wrap ome.scifio.io.IRandomAccess objects and be passed to API expecting a loci.common.IRandomAccess object.

IRandomAccessAdapter.ModernWrapper(IRandomAccess) - Constructor for class loci.common.adapter.IRandomAccessAdapter.ModernWrapper

is - Variable in class loci.poi.util.BlockingInputStream

is_fixed - Variable in class mdbtools.libmdb.MdbColumn

IS_GLITCHED - Static variable in class loci.plugins.prefs.OptionsDialog

Flag indicating whether to invoke workaround for AWT refresh bug.

IS_JET3(MdbHandle) - Static method in class mdbtools.libmdb.macros

IS_JET4(MdbHandle) - Static method in class mdbtools.libmdb.macros

IS_STUB - Static variable in class com.luratech.lwf.lwfDecoder

is_text_type(int) - Static method in class mdbtools.mdb_export

isAbsolute() - Method in class loci.common.Location

Tests whether or not this path name is absolute.

isAbsolute() - Method in class ome.scifio.io.Location

Tests whether or not this path name is absolute.

isAccessibilityIgnored() - Method in class loci.common.ReflectedUniverse

Gets whether access modifiers (protected, private, etc.) are ignored.

isAccessibilityIgnored() - Method in class ome.scifio.common.ReflectedUniverse

Gets whether access modifiers (protected, private, etc.) are ignored.

isADateFormat(int, String) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a format ID and its format String, will check to see if the format represents a date format or not.

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord

isAfter(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

returns whether this cell is after the passed in cell

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord

isAllocated(int, int) - Method in class loci.poi.util.IntList2d

isAllSet(int) - Method in class loci.poi.util.BitField

Are all of the bits set or not? This is a stricter test than isSet, in that all of the bits in a multi-bit set must be set for this method to return true

isAscending() - Method in class mdbtools.dbengine.sql.OrderBy

isAttributeRequired(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

isAuto() - Method in class loci.poi.hssf.record.LineFormatRecord

automatic format

isAutoBackground() - Method in class loci.poi.hssf.record.TextRecord

isAutoColor() - Method in class loci.poi.hssf.record.TextRecord

true = automaticly selected colour, false = user-selected

isAutofill() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

whether object uses an automatic fill style

isAutoGeneratedText() - Method in class loci.poi.hssf.record.TextRecord

isAutoLabelDeleted() - Method in class loci.poi.hssf.record.TextRecord

isAutoline() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

whether object uses an automatic line style

isAutomatic() - Method in class loci.poi.hssf.record.AreaFormatRecord

automatic formatting

isAutomaticCategoryCrossing() - Method in class loci.poi.hssf.record.ValueRangeRecord

category crossing point is automatically selected

isAutomaticMajor() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic major unit selected

isAutomaticMaximum() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic maximum value selected

isAutomaticMinimum() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic minimum value selected

isAutomaticMinor() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic minor unit selected

isAutoPlotArea() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

??

isAutoPosition() - Method in class loci.poi.hssf.record.FrameRecord

excel calculates the position automatically

isAutoPosition() - Method in class loci.poi.hssf.record.LegendRecord

automatic positioning (1=docked)

isAutorotate() - Method in class loci.poi.hssf.record.TickRecord

automatically rotate the text

isAutoscale() - Method in class loci.plugins.in.ImporterOptions

isAutoSeries() - Method in class loci.poi.hssf.record.LegendRecord

excel 5 only (true)

isAutoSize() - Method in class loci.poi.hssf.record.FrameRecord

excel calculates the size automatically if true

isAutoTextBackground() - Method in class loci.poi.hssf.record.TickRecord

use the quote unquote automatic color for text background

isAutoTextColor() - Method in class loci.poi.hssf.record.TickRecord

use the quote unquote automatic color for text

isAutoXPositioning() - Method in class loci.poi.hssf.record.LegendRecord

position of legend on the x axis is automatic

isAutoYPositioning() - Method in class loci.poi.hssf.record.LegendRecord

position of legend on the y axis is automatic

isBaxcel() - Method in class loci.poi.hssf.record.formula.AttrPtg

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord

isBefore(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

returns whether this cell is before the passed in cell

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord

isBigTiff - Variable in class loci.formats.out.TiffWriter

Whether or not the output file is a BigTIFF file.

isBigTiff() - Method in class loci.formats.tiff.IFD

Gets whether this is a BigTIFF IFD.

isBigTiff() - Method in class loci.formats.tiff.TiffParser

Returns whether or not the current TIFF file contains BigTIFF data.

isBigTiff() - Method in class loci.formats.tiff.TiffSaver

Returns whether or not we are writing BigTIFF data.

isBinary(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

isBlipId() - Method in class loci.poi.ddf.EscherProperty

isBoolean() - Method in class loci.poi.hssf.record.BoolErrRecord

Indicates whether the call holds a boolean value

isBorder() - Method in class loci.poi.hssf.record.DatRecord

data table has a border

isBuiltInName() - Method in class loci.poi.hssf.record.NameRecord

Convenience Function to determine if the name is a built-in name

isBZip2File(String) - Static method in class loci.common.BZip2Handle

Returns true if the given filename is a BZip2 file.

isBZip2File(String) - Static method in class ome.scifio.io.BZip2Handle

Returns true if the given filename is a BZip2 file.

isCached() - Method in class com.sun.media.imageio.stream.RawImageInputStream

isCachedFile() - Method in class com.sun.media.imageio.stream.RawImageInputStream

isCachedMemory() - Method in class com.sun.media.imageio.stream.RawImageInputStream

isCellDateFormatted(HSSFCell) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Check if a cell contains a date Since dates are stored internally in Excel as double values we infer it is a date if it is formatted as such.

isCellInternalDateFormatted(HSSFCell) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Check if a cell contains a date, checking only for internal excel date formats.

isCellOk(String) - Method in class loci.poi.hssf.util.RangeAddress

isCertain() - Method in class loci.formats.AxisGuesser

Gets whether the guesser is confident that all axes are correct.

isChartTypeManuallyFormatted() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Has the chart type been manually formatted?

isColAbsolute() - Method in class loci.poi.hssf.util.CellReference

isColorLut() - Method in class loci.plugins.util.RecordedImageProcessor

isColorModeColorized() - Method in class loci.plugins.in.ImporterOptions

isColorModeComposite() - Method in class loci.plugins.in.ImporterOptions

isColorModeCustom() - Method in class loci.plugins.in.ImporterOptions

isColorModeDefault() - Method in class loci.plugins.in.ImporterOptions

isColorModeGrayscale() - Method in class loci.plugins.in.ImporterOptions

isColRelative() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

isColRelative() - Method in class loci.poi.hssf.record.formula.ReferencePtg

isColumnBroken(short) - Method in class loci.poi.hssf.model.Sheet

Queries if the specified column has a page break

isColumnBroken(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determines if there is a page break at the indicated column

isColumnGroupCollapsed(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

isColumnGroupHiddenByParent(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

isColumnHidden(short) - Method in class loci.poi.hssf.model.Sheet

Get the hidden property for a given column.

isColumnHidden(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Get the hidden state for a given column.

isCommandName() - Method in class loci.poi.hssf.record.NameRecord

isCompatibleRaster(Raster) - Method in class loci.formats.gui.Index16ColorModel

isCompatibleRaster(Raster) - Method in class loci.formats.gui.SignedColorModel

isCompatibleRaster(Raster) - Method in class loci.formats.gui.UnsignedIntColorModel

isComplex() - Method in class loci.poi.ddf.EscherProperty

isComplexFunction() - Method in class loci.poi.hssf.record.NameRecord

isCompressed() - Method in class loci.poi.ddf.EscherMetafileBlip

isCompressed() - Method in class loci.poi.ddf.EscherPictBlip

isCompressionLossless - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Whether the compression is lossless.

isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieves a value indicating whether the compression is lossless.

isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

isCompressionLossless - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Lossless flag for known compression types.

isCompSpecified(int) - Method in class jj2000.j2k.ModuleSpec

Whether or not specifications have been entered for the given component.

isCompTransfUsed() - Method in class jj2000.j2k.image.CompTransfSpec

Check if component transformation is used in any of the tiles.

isConcatenate() - Method in class loci.plugins.in.ImporterOptions

isContainerRecord() - Method in class loci.poi.ddf.EscherRecord

Determine whether this is a container record by inspecting the option field.

isContinueNext() - Method in class loci.poi.hssf.record.RecordInputStream

Returns true iif a Continue record is next in the excel stream

isCrossCategoryAxisAtMaximum() - Method in class loci.poi.hssf.record.ValueRangeRecord

category axis to cross at maximum value

isCrossesFarRight() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

axis crosses at the far right

isCS_sRGB() - Method in class loci.formats.gui.TwoChannelColorSpace

isCustomNumberFormat() - Method in class loci.poi.hssf.record.LinkedDataRecord

true if this object has a custom number format

isDataTable() - Method in class loci.poi.hssf.record.LegendRecord

1 if chart contains data table

isDataTypeOK(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns true if the given data type may be used for the data associated with this tag.

isDefaultBase() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default base unit

isDefaultCross() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default crossing point

isDefaultDateSettings() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use default date setttings for this axis

isDefaultMajor() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default major unit

isDefaultMaximum() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default maximum category

isDefaultMinimum() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default minimum category

isDefaultMinorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default minor unit

isDefaultPlotDimensions() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Indicates that the default area dimensions should be used.

isDeleteOK() - Method in class loci.poi.poifs.filesystem.DirectoryNode

extensions use this method to verify internal rules regarding deletion of the underlying store.

isDeleteOK() - Method in class loci.poi.poifs.filesystem.DocumentNode

extensions use this method to verify internal rules regarding deletion of the underlying store.

isDeleteOK() - Method in class loci.poi.poifs.filesystem.EntryNode

extensions use this method to verify internal rules regarding deletion of the underlying store.

isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns true if the quantizer of given tile-component uses derived quantization step sizes.

isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns true if given tile-component uses derived quantization step sizes.

isDerived(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec

Returns true if given tile-component uses derived quantization step size.

isDirectory() - Method in class loci.common.Location

Returns true if this pathname exists and represents a directory.

isDirectory() - Method in class loci.poi.poifs.property.DirectoryProperty

isDirectory() - Method in class loci.poi.poifs.property.DocumentProperty

isDirectory() - Method in class loci.poi.poifs.property.Property

isDirectory() - Method in class ome.scifio.io.Location

Returns true if this pathname exists and represents a directory.

isDirectoryEntry() - Method in class loci.poi.poifs.filesystem.DirectoryNode

is this a DirectoryEntry?

isDirectoryEntry() - Method in interface loci.poi.poifs.filesystem.Entry

is this a DirectoryEntry?

isDirectoryEntry() - Method in class loci.poi.poifs.filesystem.EntryNode

is this a DirectoryEntry?

isDisplayAsPercentage() - Method in class loci.poi.hssf.record.AreaRecord

results displayed as percentages

isDisplayAsPercentage() - Method in class loci.poi.hssf.record.BarRecord

display chart values as a percentage

isDisplayFormulas() - Method in class loci.poi.hssf.model.Sheet

Returns if formulas are displayed.

isDisplayFormulas() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns if formulas are displayed.

isDisplayGridlines() - Method in class loci.poi.hssf.model.Sheet

Returns if gridlines are displayed.

isDisplayGridlines() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns if gridlines are displayed.

isDisplayRowColHeadings() - Method in class loci.poi.hssf.model.Sheet

Returns if RowColHeadings are displayed.

isDisplayRowColHeadings() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns if RowColHeadings are displayed.

isDocumentEntry() - Method in class loci.poi.poifs.filesystem.DocumentNode

is this a DocumentEntry?

isDocumentEntry() - Method in interface loci.poi.poifs.filesystem.Entry

is this a DocumentEntry?

isDocumentEntry() - Method in class loci.poi.poifs.filesystem.EntryNode

is this a DocumentEntry?

isDocumentSummaryInformation() - Method in class loci.poi.hpsf.PropertySet

Checks whether this PropertySet is a Document Summary Information.

isDocumentSummaryInformation() - Method in class loci.poi.hpsf.SpecialPropertySet

isDoNotSizeWithWindow() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Do not size the chart when the window changes size

isDrawTicks() - Method in class loci.poi.hssf.record.LineFormatRecord

draw tick marks

isEmpty() - Method in class loci.common.IniList

isEmpty() - Method in class loci.common.IniTable

isEmpty() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

is this DirectoryEntry empty?

isEmpty() - Method in class loci.poi.poifs.filesystem.DirectoryNode

is this DirectoryEntry empty?

isEmpty() - Method in class loci.poi.util.DoubleList

Returns true if this list contains no elements.

isEmpty() - Method in class loci.poi.util.IntList

Returns true if this list contains no elements.

isEmpty() - Method in class loci.poi.util.ShortList

Returns true if this list contains no elements.

isEOFInBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Whether the end of the file is in the current buffer or not

isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService

Determine whether or not two OMEXMLMetadata objects are equal.

isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord

isEqual(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

returns whether this cell represents the same cell (NOT VALUE)

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord

isError() - Method in class loci.poi.hssf.record.BoolErrRecord

Indicates whether the call holds an error value

isExtendedText() - Method in class loci.poi.hssf.record.UnicodeString

isFalse() - Method in class loci.poi.ddf.EscherBoolProperty

Whether this boolean property is false

isFalseColor() - Method in class loci.formats.FileStitcher

isFalseColor() - Method in class loci.formats.FormatReader

isFalseColor() - Method in interface loci.formats.IFormatReader

Returns false if IFormatReader.isIndexed() is false, or if IFormatReader.isIndexed() is true and the lookup table represents "real" color data.

isFalseColor() - Method in class loci.formats.ImageReader

isFalseColor() - Method in class loci.formats.ReaderWrapper

isFalseColor() - Method in class loci.tests.testng.Configuration

isFiji() - Static method in class loci.plugins.Updater

Returns true if the current ImageJ instance is actually a Fiji instance.

isFile() - Method in class loci.common.Location

Returns true if this pathname exists and represents a regular file.

isFile() - Method in class ome.scifio.io.Location

Returns true if this pathname exists and represents a regular file.

isFilled() - Method in class loci.formats.ChannelFiller

Returns true if the indices are being factored out.

isFirstColRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg

isFirstColRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg

isFirstRowRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg

isFirstRowRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg

isFirstTime() - Method in class loci.plugins.in.ImporterOptions

isFixed() - Method in class loci.formats.FilePatternBlock

isFixedMap() - Method in class ome.metakit.ColumnMap

Return whether or not this map represents a fixed-type column.

isFloatingPoint(int) - Static method in class loci.formats.FormatTools

Determines whether the given pixel type is floating point or integer.

isForceThumbnails() - Method in class loci.plugins.in.ImporterOptions

isFormulaInShared(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord

isFreezePane() - Method in class loci.poi.hssf.util.PaneInformation

Returns true if this is a Freeze pane, false if it is a split pane.

isFullPlane(int, int, int, int) - Method in class loci.formats.FormatWriter

Returns true if the given rectangle coordinates correspond to a full image in the given series.

isFullyNonReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec

Check the irreversibility of the whole image.

isFullyReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec

Check the reversibility of the whole image.

isFunctionName() - Method in class loci.poi.hssf.record.NameRecord

isGenerated() - Method in class loci.poi.hssf.record.TextRecord

isGoto() - Method in class loci.poi.hssf.record.formula.AttrPtg

isGrayscaleMapping(IndexColorModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Tests whether the color indices represent a gray-scale image with the indicated number of bits over the color component range [0,255].

isGridsPrinted() - Method in class loci.poi.hssf.model.Sheet

get whether gridlines are printed.

isGridsPrinted() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether gridlines are printed.

isGroupFiles() - Method in class loci.formats.FileStitcher

isGroupFiles() - Method in class loci.formats.FormatReader

isGroupFiles() - Method in interface loci.formats.IFormatReader

Returns true if we should group files in multi-file formats.

isGroupFiles() - Method in class loci.formats.ImageReader

isGroupFiles() - Method in class loci.formats.ReaderWrapper

isGroupFiles() - Method in class loci.plugins.in.ImporterOptions

isGroupFiles(String[]) - Method in class loci.plugins.macro.LociFunctions

isGZipFile(String) - Static method in class loci.common.GZipHandle

Returns true if the given filename is a gzip file.

isGZipFile(String) - Static method in class ome.scifio.io.GZipHandle

Returns true if the given filename is a gzip file.

isHidden() - Method in class loci.common.Location

Returns true if the pathname is 'hidden'.

isHidden() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether the cell is hidden or not

isHidden() - Method in class ome.scifio.io.Location

Returns true if the pathname is 'hidden'.

isHiddenName() - Method in class loci.poi.hssf.record.NameRecord

isHorizontal() - Method in class loci.poi.hssf.record.BarRecord

true to display horizontal bar charts, false for vertical

isHorizontalBorder() - Method in class loci.poi.hssf.record.DatRecord

has a horizontal border

isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFChildAnchor

isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

isHTTP() - Method in class loci.plugins.in.ImporterOptions

isIFDPointer() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns true if this tag is used to point to an IFD structure containing additional tags.

isIgnoredFile(String, ConfigurationTree) - Static method in class loci.tests.testng.TestTools

Determines if the given file should be ignored by the test suite.

isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

isInCache(int[]) - Method in class loci.formats.cache.Cache

Returns true if the object at the given dimensional position is in the cache.

isInCache(int) - Method in class loci.formats.cache.Cache

Returns true if the object at the given index is in the cache.

isIndentNotParentAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the alignment in this XF instead of the parent XF.

isIndentNotParentBorder() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the border in this XF instead of the parent XF.

isIndentNotParentCellOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the locking/hidden in this XF instead of the parent XF.

isIndentNotParentFont() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the font in this XF instead of the parent XF.

isIndentNotParentFormat() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the format in this XF instead of the parent XF.

isIndentNotParentPattern() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the pattern in this XF instead of the parent XF.

isIndexed() - Method in class loci.formats.ChannelFiller

isIndexed() - Method in class loci.formats.ChannelMerger

isIndexed() - Method in class loci.formats.FileStitcher

isIndexed() - Method in class loci.formats.FormatReader

isIndexed() - Method in interface loci.formats.IFormatReader

Gets whether the image planes are indexed color.

isIndexed() - Method in class loci.formats.ImageReader

isIndexed() - Method in class loci.formats.ReaderWrapper

isIndexed(String[]) - Method in class loci.plugins.macro.LociFunctions

isIndexed() - Method in class loci.tests.testng.Configuration

isIndicesForGrayscale(byte[], byte[], byte[]) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Tests whether the color indices represent a gray-scale image.

isInstance(Class<?>, Object) - Static method in class loci.common.ReflectedUniverse

Returns whether the given object is compatible with the specified class for the purposes of reflection.

isInstance(Class<?>, Object) - Static method in class ome.scifio.common.ReflectedUniverse

Returns whether the given object is compatible with the specified class for the purposes of reflection.

isIntegral() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Indicates whether the value associated with the field is of integral data type.

isIntensity() - Method in class loci.formats.in.SDTReader

Gets whether the reader is combining each lifetime histogram into a summed intensity image plane.

isInterleaved() - Method in class loci.formats.ChannelMerger

isInterleaved() - Method in class loci.formats.FileStitcher

isInterleaved(int) - Method in class loci.formats.FileStitcher

isInterleaved() - Method in class loci.formats.FormatReader

isInterleaved(int) - Method in class loci.formats.FormatReader

isInterleaved() - Method in class loci.formats.FormatWriter

isInterleaved() - Method in interface loci.formats.IFormatReader

Gets whether or not the channels are interleaved.

isInterleaved(int) - Method in interface loci.formats.IFormatReader

Gets whether or not the given sub-channel is interleaved.

isInterleaved() - Method in interface loci.formats.IFormatWriter

Gets whether or not the channels in an image are interleaved.

isInterleaved() - Method in class loci.formats.ImageReader

isInterleaved(int) - Method in class loci.formats.ImageReader

isInterleaved() - Method in class loci.formats.ImageWriter

isInterleaved(int) - Method in class loci.formats.in.ICSReader

isInterleaved(int) - Method in class loci.formats.in.SDTReader

isInterleaved() - Method in class loci.formats.ReaderWrapper

isInterleaved(int) - Method in class loci.formats.ReaderWrapper

isInterleaved() - Method in class loci.formats.WriterWrapper

isInterleaved(String[]) - Method in class loci.plugins.macro.LociFunctions

isInterleaved() - Method in class loci.tests.testng.Configuration

isInterleavedSubC(Double, String[]) - Method in class loci.plugins.macro.LociFunctions

isInternalDateFormat(int) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a format ID this will check whether the format represents an internal excel date format or not.

isInValueSection() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

isInValueSection() - Method in class loci.poi.hssf.record.BlankRecord

isInValueSection() - Method in class loci.poi.hssf.record.BoolErrRecord

isInValueSection() - Method in class loci.poi.hssf.record.DBCellRecord

isInValueSection() - Method in class loci.poi.hssf.record.FormulaRecord

isInValueSection() - Method in class loci.poi.hssf.record.LabelRecord

isInValueSection() - Method in class loci.poi.hssf.record.LabelSSTRecord

isInValueSection() - Method in class loci.poi.hssf.record.NumberRecord

isInValueSection() - Method in class loci.poi.hssf.record.Record

DBCELL, ROW, VALUES all say yes

isInValueSection() - Method in class loci.poi.hssf.record.RKRecord

isInValueSection() - Method in class loci.poi.hssf.record.RowRecord

isInValueSection() - Method in class loci.poi.hssf.record.SharedFormulaRecord

Mirroring formula records so it is registered in the ValueRecordsAggregate

isInValueSection() - Method in class loci.poi.hssf.record.StringRecord

isInvert() - Method in class loci.poi.hssf.record.AreaFormatRecord

swap foreground and background colours when data is negative

isInvertedLut() - Method in class loci.plugins.util.RecordedImageProcessor

isInvertX() - Method in class loci.formats.in.PrairieMetadata

Gets whether the stage position X coordinates are inverted (i.e., left-to-right).

isInvertY() - Method in class loci.formats.in.PrairieMetadata

Gets whether the stage position Y coordinates are inverted (i.e., bottom-to-top).

isIsDate() - Method in class loci.poi.hssf.record.AxisOptionsRecord

this is a date axis

isItalic() - Method in class loci.poi.hssf.record.FontRecord

get whether the font is to be italics or not

isJPEG - Variable in class loci.formats.in.BaseZeissReader

isJVM64Bit() - Method in class loci.formats.gui.LegacyQTTools

Whether this JVM is 64-bit.

isKillable() - Method in class loci.plugins.util.RecordedImageProcessor

Deprecated.

isLabelAsPercentage() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show category label/value as percentage (pie charts only)

isLastColRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg

isLastColRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg

isLastRowRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg

isLastRowRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg

isLeaf - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

isLeaf(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

isLegacy() - Method in class loci.formats.DelegateReader

Gets whether to use the legacy reader by default.

isLicenseCodeException(FormatException) - Static method in class loci.plugins.util.LuraWave

Returns true if the given exception was cause by a missing or invalid LuraWave license code.

isLittleEndian() - Method in class loci.common.NIOInputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class loci.common.RandomAccessInputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class loci.common.RandomAccessOutputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class loci.formats.FileStitcher

isLittleEndian() - Method in class loci.formats.FormatReader

isLittleEndian() - Method in interface loci.formats.IFormatReader

Gets whether the data is in little-endian format.

isLittleEndian() - Method in class loci.formats.ImageReader

isLittleEndian() - Method in class loci.formats.ome.OmeisImporter

Deprecated.

Gets whether the local system uses little-endian byte order.

isLittleEndian() - Method in class loci.formats.ReaderWrapper

isLittleEndian() - Method in class loci.formats.tiff.IFD

Gets whether the TIFF information in this IFD is little-endian.

isLittleEndian() - Method in class loci.formats.tiff.TiffSaver

Returns whether or not we are writing little-endian data.

isLittleEndian(String[]) - Method in class loci.plugins.macro.LociFunctions

isLittleEndian() - Method in class loci.tests.testng.Configuration

isLittleEndian - Variable in class ome.scifio.io.NIOInputStream

Endianness of the stream.

isLittleEndian() - Method in class ome.scifio.io.NIOInputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class ome.scifio.io.RandomAccessInputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class ome.scifio.io.RandomAccessOutputStream

Gets the endianness of the stream.

isLoadedFromMemo() - Method in class loci.formats.Memoizer

isLocal() - Method in class loci.plugins.in.ImporterOptions

isLocked() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

true if object is locked when sheet has been protected

isLocked() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether the cell is locked or not

isLogarithmicScale() - Method in class loci.poi.hssf.record.ValueRangeRecord

use logarithmic scale

isLogUnsupportedTypes() - Static method in class loci.poi.hpsf.VariantSupport

Checks whether logging of unsupported variant types warning is turned on or off.

isLossless() - Method in class loci.formats.in.ND2Handler

isMacoutlined() - Method in class loci.poi.hssf.record.FontRecord

whether to use the mac outline font style thing (mac only) - Some mac person should comment this instead of me doing it (since I have no idea)

isMacro() - Method in class loci.poi.hssf.record.NameRecord

isMacshadowed() - Method in class loci.poi.hssf.record.FontRecord

whether to use the mac shado font style thing (mac only) - Some mac person should comment this instead of me doing it (since I have no idea)

isMetadataCollected() - Method in class loci.formats.FormatReader

Deprecated.

isMetadataCollected() - Method in interface loci.formats.IFormatReader

Deprecated.

Use IMetadataConfigurable.getMetadataOptions() instead.

isMetadataCollected() - Method in class loci.formats.ImageReader

Deprecated.

isMetadataCollected() - Method in class loci.formats.ReaderWrapper

Deprecated.

isMetadataCollected(Boolean[]) - Method in class loci.plugins.macro.LociFunctions

isMetadataComplete() - Method in class loci.formats.FormatReader

isMetadataComplete() - Method in interface loci.formats.IFormatReader

Returns true if this format's metadata is completely parsed.

isMetadataComplete() - Method in class loci.formats.ImageReader

isMetadataComplete() - Method in class loci.formats.ReaderWrapper

isMetadataComplete(String[]) - Method in class loci.plugins.macro.LociFunctions

isMetadataFiltered() - Method in class loci.formats.FormatReader

isMetadataFiltered() - Method in interface loci.formats.IFormatReader

Returns true if ugly metadata (entries with unprintable characters, and extremely large entries) are discarded from the metadata table.

isMetadataFiltered() - Method in class loci.formats.ImageReader

isMetadataFiltered() - Method in class loci.formats.ReaderWrapper

isMetadataFiltered(String[]) - Method in class loci.plugins.macro.LociFunctions

isMinMaxPopulated() - Method in class loci.formats.MinMaxCalculator

Returns true if the values returned by getChannelGlobalMinimum/Maximum can be trusted.

isModulo - Variable in class loci.formats.tools.MakeTestOmeTiff

isMultibyte() - Method in class loci.poi.hssf.record.FooterRecord

see the unicode flag

isMultibyte() - Method in class loci.poi.hssf.record.HeaderRecord

see the unicode flag

isND2Nikon() - Static method in class loci.plugins.util.LociPrefs

isNeeded() - Method in class loci.poi.hssf.record.RecalcIdRecord

isNode - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

Flag indicating whether this subband mask is a node or not

isNode - Variable in class jj2000.j2k.wavelet.Subband

True if it is a node in the tree, false if it is a leaf.

isNoFill() - Method in class loci.poi.hssf.usermodel.HSSFShape

isNonStandardICCColorSpace(ColorSpace) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Returns true if the given ColorSpace object is an instance of ICC_ColorSpace but is not one of the standard ColorSpaces returned by ColorSpace.getInstance().

isNormalized() - Method in class loci.formats.FormatReader

isNormalized() - Method in interface loci.formats.IFormatReader

Returns true if we should normalize float data.

isNormalized() - Method in class loci.formats.ImageReader

isNormalized() - Method in class loci.formats.ReaderWrapper

isNormalized(Boolean[]) - Method in class loci.plugins.macro.LociFunctions

isNotBigImage() - Method in class loci.tests.testng.OpenBytesPerformanceTest

ISO8601_FORMAT - Static variable in class loci.common.DateTools

ISO 8601 date output formatter without milliseconds.

ISO8601_FORMAT_MS - Static variable in class loci.common.DateTools

ISO 8601 date output formatter with milliseconds.

ISO8601_FORMAT_MS - Static variable in class ome.scifio.common.DateTools

ISO 8601 date output format with milliseconds.

ISO8601_FORMAT_MS - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output format with milliseconds.

ISO8601_FORMAT_S - Static variable in class ome.scifio.common.DateTools

ISO 8601 date output format without milliseconds.

ISO8601_FORMAT_S - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output format without milliseconds.

ISO8601_FORMATTER_MS - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output formatter with milliseconds.

ISO8601_FORMATTER_S - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output formatter without milliseconds.

ISO8601_PARSER - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date input formatter.

ISO_SPEED_RATINGS - Static variable in class loci.formats.tiff.IFD

isOMERO - Variable in class loci.ome.io.OMECredentials

isOMERO() - Method in class loci.plugins.in.ImporterOptions

isOMEXMLMetadata(Object) - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.isOMEXMLMetadata(Object) instead.

isOMEXMLMetadata(Object) - Method in interface loci.formats.services.OMEXMLService

Checks whether the given object is an OME-XML metadata object.

isOMEXMLMetadata(Object) - Method in class loci.formats.services.OMEXMLServiceImpl

isOMEXMLRoot(Object) - Static method in class loci.formats.MetadataTools

Deprecated.

This method is not thread-safe; use OMEXMLService.isOMEXMLRoot(Object) instead.

isOMEXMLRoot(Object) - Method in interface loci.formats.services.OMEXMLService

Checks whether the given object is an OME-XML root object.

isOMEXMLRoot(Object) - Method in class loci.formats.services.OMEXMLServiceImpl

isOptimizedChoose() - Method in class loci.poi.hssf.record.formula.AttrPtg

isOptimizedIf() - Method in class loci.poi.hssf.record.formula.AttrPtg

isOrderCertain() - Method in class loci.formats.FileStitcher

isOrderCertain() - Method in class loci.formats.FormatReader

isOrderCertain() - Method in interface loci.formats.IFormatReader

Gets whether the dimension order and sizes are known, or merely guesses.

isOrderCertain() - Method in class loci.formats.ImageReader

isOrderCertain() - Method in class loci.formats.ReaderWrapper

isOrderCertain(String[]) - Method in class loci.plugins.macro.LociFunctions

isOriginalMetadataPopulated() - Method in class loci.formats.FormatReader

isOriginalMetadataPopulated() - Method in interface loci.formats.IFormatReader

Returns true if we should save proprietary metadata in the MetadataStore.

isOriginalMetadataPopulated() - Method in class loci.formats.ImageReader

isOriginalMetadataPopulated() - Method in class loci.formats.ReaderWrapper

isOriginalMetadataPopulated(Boolean[]) - Method in class loci.plugins.macro.LociFunctions

isOriginalSigned(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns true if the original data of the specified component was signed.

isOrigSig - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

An array specifying, for each component,if the data was signed or not

isOrigSigned(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns true if the data read was originally signed in the specified component, false if not.

isOrigSigned(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns true if the data read was originally signed in the specified component, false if not.

isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns true if the data read was originally signed in the specified component, false if not.

isot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT

isPacketWritable() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns true if the current packet is writable i.e.

isPictQTJava() - Static method in class loci.plugins.util.LociPrefs

isPlotVisibleOnly() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Only show visible cells on the chart.

isPossible(String, String) - Method in class loci.plugins.prefs.OptionsList

Gets whether the specified value is a possible one for the string option with the given key.

isPrintable() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

object appears when printed

isPrintGridlines() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns whether gridlines are printed.

isPropertySetStream(InputStream) - Static method in class loci.poi.hpsf.PropertySet

Checks whether an InputStream is in the Horrible Property Set Format.

isPropertySetStream(byte[], int, int) - Static method in class loci.poi.hpsf.PropertySet

Checks whether a byte array is in the Horrible Property Set Format.

isProtected() - Method in class loci.poi.hssf.model.Sheet

isPseudoColorLut() - Method in class loci.plugins.util.RecordedImageProcessor

isPure() - Method in class loci.poi.hpsf.CustomProperties

Tells whether this CustomProperties instance is pure or one or more properties of the underlying low-level property set has been dropped.

isQTExpired() - Method in class loci.formats.gui.LegacyQTTools

Whether QuickTime for Java has expired.

isQTQTJava() - Static method in class loci.plugins.util.LociPrefs

isQuiet() - Method in class loci.plugins.in.ImporterOptions

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

ISRandomAccessIO - Class in jj2000.j2k.util

This class implements a wrapper to turn an InputStream into a RandomAccessIO.

ISRandomAccessIO(InputStream, int, int, int) - Constructor for class jj2000.j2k.util.ISRandomAccessIO

Creates a new RandomAccessIO wrapper for the given InputStream 'is'.

ISRandomAccessIO(InputStream) - Constructor for class jj2000.j2k.util.ISRandomAccessIO

Creates a new RandomAccessIO wrapper for the given InputStream 'is'.

isRawCodestream() - Method in class loci.formats.in.JPEG2000MetadataParser

Whether or not the codestream is raw and not JP2 boxed.

isReaderEnabled(Class<? extends IFormatReader>) - Static method in class loci.plugins.util.LociPrefs

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

isReadWrite - Variable in class ome.scifio.io.NIOFileHandle

Whether or not the file is opened read/write.

isRegex() - Method in class loci.formats.FilePattern

Returns whether or not this pattern is a regular expression.

isReserved() - Method in class loci.poi.hssf.record.ValueRangeRecord

reserved, must equal 1 (excel dev.

isReserved1() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

reserved field

isReversed() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

categories are displayed in reverse order

isReversible(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the reversibility of the tile-component data that is provided by the object.

isReversible() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns true if this transform is reversible in current tile.

isReversible() - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns true if this transform is reversible in current tile.

isReversible(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns true if the quantized data is reversible, for the specified tile-component.

isReversible(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec

Check the reversibility of the given tile-component.

isReversible(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Since ROI scaling is always a reversible operation, it calls isReversible() method of it source (the quantizer module).

isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the reversibility of the filter.

isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the reversibility of the filter.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Check the reversibility of filters contained is the given tile-component.

isReversible(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the reversibility of the given tile-component.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the reversibility of the wavelet transform for the specified component and tile.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the reversibility of the wavelet transform for the specified component, in the current tile.

isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the reversibility of the filter.

isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the reversibility of the filter.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Check the reversibility of filters contained is the given tile-component.

isReversible() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the reversibility of the filter.

isReversible(int, int) - Method in interface jj2000.j2k.wavelet.WaveletTransform

Returns the reversibility of the wavelet transform for the specified component and tile.

isRGB() - Method in class loci.formats.ChannelFiller

isRGB() - Method in class loci.formats.ChannelMerger

isRGB() - Method in class loci.formats.ChannelSeparator

isRGB() - Method in class loci.formats.FileStitcher

isRGB() - Method in class loci.formats.FormatReader

isRGB() - Method in interface loci.formats.IFormatReader

Checks if the image planes in the file have more than one channel per IFormatReader.openBytes(int) call.

isRGB() - Method in class loci.formats.ImageReader

isRGB() - Method in class loci.formats.ReaderWrapper

isRGB() - Method in interface loci.formats.services.WlzService

Gets boolean for whether image is colour or not.

isRGB() - Method in class loci.formats.services.WlzServiceImpl

isRGB() - Method in class loci.tests.testng.Configuration

isRichText() - Method in class loci.poi.hssf.record.UnicodeString

isROIinPkt() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Tells if there was ROI information in the last written packet

isRoot() - Method in class loci.poi.poifs.filesystem.EntryNode

is this the root of the tree?

isRowAbsolute() - Method in class loci.poi.hssf.util.CellReference

isRowBroken(int) - Method in class loci.poi.hssf.model.Sheet

Queries if the specified row has a page break

isRowBroken(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determines if there is a page break at the indicated row

isRowGroupCollapsed(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

isRowGroupHiddenByParent(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

isRowRelative() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

isRowRelative() - Method in class loci.poi.hssf.record.formula.ReferencePtg

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSameAsFullWT(int, int, int) - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.

isSaved() - Method in class loci.plugins.prefs.Option

Gets whether option should be saved to ImageJ preferences file.

isSaved(String) - Method in class loci.plugins.prefs.OptionsList

Gets whether the option with the given key is saved to the ImageJ preferences file.

isSavedToMemo() - Method in class loci.formats.Memoizer

isSDTIntensity() - Static method in class loci.plugins.util.LociPrefs

isSemiVolatile() - Method in class loci.poi.hssf.record.formula.AttrPtg

isSeriesOn(int) - Method in class loci.plugins.in.ImporterOptions

isSet(String) - Method in class loci.plugins.prefs.OptionsList

Gets the value of the boolean option with the given key.

isSet(int) - Method in class loci.poi.util.BitField

Is the field set or not? This is most commonly used for a single-bit field, which is often used to represent a boolean value; the results of using it for a multi-bit field is to determine whether *any* of its bits are set

isSetByDefault(String) - Method in class loci.plugins.prefs.OptionsList

Gets the default value of the boolean option with the given key.

isShadow() - Method in class loci.poi.hssf.record.AreaRecord

display a shadow for the chart

isShadow() - Method in class loci.poi.hssf.record.BarRecord

display a shadow for the chart

isSharedFormula() - Method in class loci.poi.hssf.record.FormulaRecord

isSheetNameOk() - Method in class loci.poi.hssf.util.RangeAddress

isSheetNameOk(String) - Static method in class loci.poi.hssf.util.RangeAddress

isShowActual() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show actual value of the data point

isShowBubbleSizes() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

??

isShowBubbleSizes() - Method in class loci.poi.hssf.record.TextRecord

isShowCategoryLabelAsPercentage() - Method in class loci.poi.hssf.record.TextRecord

isShowKey() - Method in class loci.poi.hssf.record.TextRecord

true = draw legend

isShowLabel() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

display category label

isShowLabel() - Method in class loci.poi.hssf.record.TextRecord

isShowMetadata() - Method in class loci.plugins.in.ImporterOptions

isShowOMEXML() - Method in class loci.plugins.in.ImporterOptions

isShowPercent() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show value as percentage of total (pie charts only)

isShowSeriesKey() - Method in class loci.poi.hssf.record.DatRecord

shows the series key

isShowValue() - Method in class loci.poi.hssf.record.TextRecord

false = text is category label

isShowValueAsPercentage() - Method in class loci.poi.hssf.record.TextRecord

isSigned(int) - Static method in class loci.formats.FormatTools

Determines whether the given pixel type is signed or unsigned.

isSingleFile(String) - Method in class loci.formats.FormatReader

isSingleFile(String) - Method in interface loci.formats.IFormatReader

Returns true if this is a single-file format.

isSingleFile(String) - Method in class loci.formats.ImageReader

isSingleFile(String) - Method in class loci.formats.in.AFIReader

isSingleFile(String) - Method in class loci.formats.in.AnalyzeReader

isSingleFile(String) - Method in class loci.formats.in.APLReader

isSingleFile(String) - Method in class loci.formats.in.BDReader

isSingleFile(String) - Method in class loci.formats.in.BioRadReader

isSingleFile(String) - Method in class loci.formats.in.BrukerReader

isSingleFile(String) - Method in class loci.formats.in.CellSensReader

isSingleFile(String) - Method in class loci.formats.in.CellVoyagerReader

isSingleFile(String) - Method in class loci.formats.in.DeltavisionReader

isSingleFile(String) - Method in class loci.formats.in.FakeReader

isSingleFile(String) - Method in class loci.formats.in.FlexReader

isSingleFile(String) - Method in class loci.formats.in.FujiReader

isSingleFile(String) - Method in class loci.formats.in.FV1000Reader

isSingleFile(String) - Method in class loci.formats.in.HitachiReader

isSingleFile(String) - Method in class loci.formats.in.ICSReader

isSingleFile(String) - Method in class loci.formats.in.ImagicReader

isSingleFile(String) - Method in class loci.formats.in.InCellReader

isSingleFile(String) - Method in class loci.formats.in.L2DReader

isSingleFile(String) - Method in class loci.formats.in.LeicaReader

isSingleFile(String) - Method in class loci.formats.in.MetamorphReader

isSingleFile(String) - Method in class loci.formats.in.MIASReader

isSingleFile(String) - Method in class loci.formats.in.MicromanagerReader

isSingleFile(String) - Method in class loci.formats.in.NDPISReader

isSingleFile(String) - Method in class loci.formats.in.NiftiReader

isSingleFile(String) - Method in class loci.formats.in.NRRDReader

isSingleFile(String) - Method in class loci.formats.in.OMETiffReader

isSingleFile(String) - Method in class loci.formats.in.OperettaReader

isSingleFile(String) - Method in class loci.formats.in.PerkinElmerReader

isSingleFile(String) - Method in class loci.formats.in.PrairieReader

isSingleFile(String) - Method in class loci.formats.in.ScanrReader

isSingleFile(String) - Method in class loci.formats.in.ScreenReader

isSingleFile(String) - Method in class loci.formats.in.TCSReader

isSingleFile(String) - Method in class loci.formats.in.TillVisionReader

isSingleFile(String) - Method in class loci.formats.in.VisitechReader

isSingleFile(String) - Method in class loci.formats.in.ZeissLSMReader

isSingleFile(String) - Method in class loci.formats.in.ZeissTIFFReader

isSingleFile(String) - Method in class loci.formats.ReaderWrapper

isSmall(int) - Static method in class loci.poi.poifs.property.Property

does the length indicate a small document?

isSmoothedLine() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show smooth line

isSpace() - Method in class loci.poi.hssf.record.formula.AttrPtg

isSpecifyRanges() - Method in class loci.plugins.in.ImporterOptions

isSplitChannels() - Method in class loci.plugins.in.ImporterOptions

isSplitFocalPlanes() - Method in class loci.plugins.in.ImporterOptions

isSplitTimepoints() - Method in class loci.plugins.in.ImporterOptions

isStacked() - Method in class loci.poi.hssf.record.AreaRecord

series is stacked

isStacked() - Method in class loci.poi.hssf.record.BarRecord

stack displayed values

isString16bit(int) - Method in class loci.poi.hssf.record.SSTRecord

isStruckout() - Method in class loci.poi.hssf.record.FontRecord

get whether the font is to be stricken out or not

isSum() - Method in class loci.poi.hssf.record.formula.AttrPtg

isSummaryInformation() - Method in class loci.poi.hpsf.PropertySet

Checks whether this PropertySet represents a Summary Information.

isSummaryInformation() - Method in class loci.poi.hpsf.SpecialPropertySet

isSupportedType(int) - Method in class loci.formats.FormatWriter

isSupportedType(int) - Method in interface loci.formats.IFormatWriter

Checks if the given pixel type is supported.

isSupportedType(int) - Method in class loci.formats.ImageWriter

isSupportedType(int) - Method in class loci.formats.WriterWrapper

isSwapDimensions() - Method in class loci.plugins.in.ImporterOptions

isTermPass - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Array of flags indicating terminated passes (valid or non-valid truncation points).

isTextLocked() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Text has been locked

isThisType(String, boolean) - Method in class loci.formats.DelegateReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.DelegateReader

isThisType(String) - Method in class loci.formats.FormatHandler

Checks if a file matches the type of this format handler.

isThisType(String, boolean) - Method in class loci.formats.FormatReader

Checks if a file matches the type of this format reader.

isThisType(byte[]) - Method in class loci.formats.FormatReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.FormatReader

isThisType(String) - Method in class loci.formats.FormatReader

isThisType(String) - Method in interface loci.formats.IFormatHandler

Checks if the given string is a valid filename for this file format.

isThisType(String, boolean) - Method in interface loci.formats.IFormatReader

Checks if the given file is a valid instance of this file format.

isThisType(byte[]) - Method in interface loci.formats.IFormatReader

Checks if the given block is a valid header for this file format.

isThisType(RandomAccessInputStream) - Method in interface loci.formats.IFormatReader

Checks if the given stream is a valid stream for this file format.

isThisType(String, boolean) - Method in class loci.formats.ImageReader

isThisType(byte[]) - Method in class loci.formats.ImageReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.ImageReader

isThisType(String) - Method in class loci.formats.ImageReader

isThisType(String) - Method in class loci.formats.ImageWriter

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AFIReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AliconaReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AmiraReader

isThisType(String, boolean) - Method in class loci.formats.in.AnalyzeReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AnalyzeReader

isThisType(String, boolean) - Method in class loci.formats.in.APLReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.APNGReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ARFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AVIReader

isThisType(String, boolean) - Method in class loci.formats.in.BDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadGelReader

isThisType(String, boolean) - Method in class loci.formats.in.BioRadReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadSCNReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BMPReader

isThisType(String, boolean) - Method in class loci.formats.in.BrukerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BrukerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BurleighReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CanonRawReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CellomicsReader

isThisType(String, boolean) - Method in class loci.formats.in.CellVoyagerReader

isThisType(String, boolean) - Method in class loci.formats.in.CellWorxReader

isThisType(String, boolean) - Method in class loci.formats.in.DeltavisionReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DeltavisionReader

isThisType(String, boolean) - Method in class loci.formats.in.DicomReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DicomReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DNGReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.Ecat7Reader

isThisType(String, boolean) - Method in class loci.formats.in.FakeReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEIReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEITiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FluoviewReader

isThisType(String, boolean) - Method in class loci.formats.in.FujiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FujiReader

isThisType(String, boolean) - Method in class loci.formats.in.FV1000Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FV1000Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanDM2Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GelReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GIFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HISReader

isThisType(String, boolean) - Method in class loci.formats.in.HitachiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HitachiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HRDGDFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImaconReader

isThisType(String, boolean) - Method in class loci.formats.in.ImagicReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisHDFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IMODReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImprovisionTiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImspectorReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCell3000Reader

isThisType(String, boolean) - Method in class loci.formats.in.InCellReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCellReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.INRReader

isThisType(String, boolean) - Method in class loci.formats.in.InveonReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InveonReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPLabReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPWReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IvisionReader

isThisType(String, boolean) - Method in class loci.formats.in.JEOLReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JEOLReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPEG2000Reader

isThisType(String, boolean) - Method in class loci.formats.in.JPKReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPXReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KhorosReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KodakReader

isThisType(String, boolean) - Method in class loci.formats.in.L2DReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.L2DReader

isThisType(String, boolean) - Method in class loci.formats.in.LegacyND2Reader

isThisType(String, boolean) - Method in class loci.formats.in.LeicaReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LeicaReader

isThisType(String, boolean) - Method in class loci.formats.in.LeicaSCNReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LEOReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LIFReader

isThisType(String, boolean) - Method in class loci.formats.in.MetamorphReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphTiffReader

isThisType(String, boolean) - Method in class loci.formats.in.MIASReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MIASReader

isThisType(String, boolean) - Method in class loci.formats.in.MicromanagerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MicromanagerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MinimalTiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MNGReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MolecularImagingReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRCReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRWReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeND2Reader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeQTReader

isThisType(String, boolean) - Method in class loci.formats.in.NDPIReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NDPISReader

isThisType(String, boolean) - Method in class loci.formats.in.NiftiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NiftiReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonElementsTiffReader

isThisType(String, boolean) - Method in class loci.formats.in.NikonReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonTiffReader

isThisType(String, boolean) - Method in class loci.formats.in.NRRDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NRRDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OBFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMETiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMEXMLReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabRawReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabReader

isThisType(String, boolean) - Method in class loci.formats.in.OperettaReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OperettaReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OxfordInstrumentsReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCIReader

isThisType(String, boolean) - Method in class loci.formats.in.PCORAWReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCORAWReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCXReader

isThisType(String, boolean) - Method in class loci.formats.in.PDSReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PDSReader

isThisType(String, boolean) - Method in class loci.formats.in.PerkinElmerReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PGMReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PhotoshopTiffReader

isThisType(String, boolean) - Method in class loci.formats.in.PrairieReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PrairieReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PSDReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PyramidTiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SBIGReader

isThisType(String, boolean) - Method in class loci.formats.in.ScanrReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScanrReader

isThisType(String, boolean) - Method in class loci.formats.in.ScreenReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScreenReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SEQReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SIFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SimplePCITiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SISReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookTiffReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SMCameraReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SpiderReader

isThisType(String, boolean) - Method in class loci.formats.in.SVSReader

isThisType(String, boolean) - Method in class loci.formats.in.TCSReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TCSReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TextReader

isThisType(String, boolean) - Method in class loci.formats.in.TillVisionReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TopometrixReader

isThisType(String, boolean) - Method in class loci.formats.in.TrestleReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TrestleReader

isThisType(String, boolean) - Method in class loci.formats.in.UnisokuReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.UnisokuReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VarianFDFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VGSAMReader

isThisType(String, boolean) - Method in class loci.formats.in.VisitechReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityClippingReader

isThisType(String, boolean) - Method in class loci.formats.in.VolocityReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.WATOPReader

isThisType(String, boolean) - Method in class loci.formats.in.WlzReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissCZIReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissLSMReader

isThisType(String, boolean) - Method in class loci.formats.in.ZeissTIFFReader

isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader

isThisType(String, boolean) - Method in class loci.formats.ReaderWrapper

isThisType(byte[]) - Method in class loci.formats.ReaderWrapper

isThisType(RandomAccessInputStream) - Method in class loci.formats.ReaderWrapper

isThisType(String) - Method in class loci.formats.ReaderWrapper

isThisType(String) - Method in class loci.formats.WriterWrapper

isThisType(RandomAccessInputStream) - Method in class loci.ome.io.OMEReader

isThisType(String) - Method in class loci.ome.io.OMEReader

isThisType(String, boolean) - Method in class loci.ome.io.OmeroReader

isThisType(String, String[]) - Method in class loci.plugins.macro.LociFunctions

isThisTypeFast(String, String[]) - Method in class loci.plugins.macro.LociFunctions

isThumbnailSeries() - Method in class loci.formats.FileStitcher

isThumbnailSeries() - Method in class loci.formats.FormatReader

isThumbnailSeries() - Method in interface loci.formats.IFormatReader

Gets whether the current series is a lower resolution copy of a different series.

isThumbnailSeries() - Method in class loci.formats.ImageReader

isThumbnailSeries() - Method in class loci.formats.ReaderWrapper

isTiffImageIO() - Static method in class loci.plugins.util.LociPrefs

isTileCompSpecified(int, int) - Method in class jj2000.j2k.ModuleSpec

Whether or not a tile-component specification has been defined

isTiled() - Method in class loci.formats.tiff.IFD

isTileSpecified(int) - Method in class jj2000.j2k.ModuleSpec

Whether or not specifications have been entered for the given tile.

isTimeSeries() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets whether this Sequence should be considered a time series.

isTopDown() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Returns the value of the topDown parameter.

isTrue() - Method in class loci.poi.ddf.EscherBoolProperty

Whether this boolean property is true

isUnCompressedUnicode() - Method in class loci.poi.hssf.record.LabelRecord

is this uncompressed unicode (16bit)? Or just 8-bit compressed?

isUnCompressedUnicode() - Method in class loci.poi.hssf.record.StringRecord

is this uncompressed unicode (16bit)? Or just 8-bit compressed?

isUngroupFiles() - Method in class loci.plugins.in.ImporterOptions

isUnicodeString(String) - Static method in class loci.poi.util.StringUtil

Checks to see if a given String needs to be represented as Unicode

isUnknown() - Method in class loci.poi.hssf.record.LineFormatRecord

book marks this as reserved = 0 but it seems to do something

isUsedFile(String) - Method in class loci.formats.FormatReader

Returns true if the given file name is in the used files list.

isUseExcel4Colors() - Method in class loci.poi.hssf.record.DataFormatRecord

set true to use excel 4 colors.

isUsing1904DateWindowing() - Method in class loci.poi.hssf.model.Workbook

Whether date windowing is based on 1/2/1904 or 1/1/1900.

isUsingPatternIds() - Method in class loci.formats.FileStitcher

Gets whether the reader is using file patterns for IDs.

isValid() - Method in class loci.formats.FilePattern

Gets whether the file pattern string is valid.

isValidExcelDate(double) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a double, checks if it is a valid Excel date.

isValidHeader() - Method in class loci.formats.tiff.TiffParser

Tests this stream to see if it represents a TIFF file.

isValidRange(int, int, int) - Static method in class loci.formats.tools.FakeImage

isValue() - Method in class loci.poi.hssf.record.BlankRecord

isValue() - Method in class loci.poi.hssf.record.BoolErrRecord

isValue() - Method in class loci.poi.hssf.record.FormulaRecord

isValue() - Method in class loci.poi.hssf.record.LabelRecord

isValue() - Method in class loci.poi.hssf.record.LabelSSTRecord

isValue() - Method in class loci.poi.hssf.record.NumberRecord

isValue() - Method in class loci.poi.hssf.record.Record

tells whether this type of record contains a value

isValue() - Method in class loci.poi.hssf.record.RKRecord

isValue() - Method in class loci.poi.hssf.record.SharedFormulaRecord

Register it in the ValueRecordsAggregate so it can go into the FormulaRecordAggregate

isValueAxisCrossing() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

set true to indicate axis crosses between categories and false to cross axis midway

isValuesInReverse() - Method in class loci.poi.hssf.record.ValueRangeRecord

values are reverses in graph

isVersionChecking() - Method in class loci.formats.Memoizer

Returns whether or not version checking is done based upon major/minor version numbers.

isVertical() - Method in class loci.poi.hssf.record.LegendRecord

vertical or horizontal legend (1 or 0 respectively).

isVertical() - Method in class loci.poi.hssf.record.TextRecord

true = text is vertical

isVerticalBorder() - Method in class loci.poi.hssf.record.DatRecord

has vertical border

isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFChildAnchor

isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

isViewBrowser() - Method in class loci.plugins.in.ImporterOptions

isViewHyperstack() - Method in class loci.plugins.in.ImporterOptions

isViewImage5D() - Method in class loci.plugins.in.ImporterOptions

isViewNone() - Method in class loci.plugins.in.ImporterOptions

isViewStandard() - Method in class loci.plugins.in.ImporterOptions

isViewView5D() - Method in class loci.plugins.in.ImporterOptions

isVirtual() - Method in class loci.plugins.in.ImporterOptions

isVisible() - Method in class loci.poi.hssf.usermodel.HSSFComment

Sets whether this comment is visible.

isWarning() - Method in class loci.common.StatusEvent

Returns whether or not this is a warning event.

isWarning() - Method in class ome.scifio.common.StatusEvent

Returns whether or not this is a warning event.

isWindowless() - Method in class loci.plugins.in.ImporterOptions

isWindowless() - Method in class loci.plugins.in.ImportProcess

isWindowless(IFormatReader) - Static method in class loci.plugins.util.LociPrefs

Gets whether windowless mode should be used when opening this reader's currently initialized dataset.

isZipFile(String) - Static method in class loci.common.ZipHandle

Returns true if the given filename is a Zip file.

isZipFile(String) - Static method in class ome.scifio.io.ZipHandle

Returns true if the given filename is a Zip file.

isZlib - Variable in class loci.formats.in.BaseZeissReader

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ConfigWindow

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ND2Widgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.PictWidgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.QTWidgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.SDTWidgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.config.TiffDelegateWidgets

itemStateChanged(ItemEvent) - Method in class loci.plugins.in.MainDialog

Handles toggling of mutually exclusive options.

itemStateChanged(ItemEvent) - Method in class loci.plugins.in.SwapDialog

IterationRecord - Class in loci.poi.hssf.record

Title: Iteration Record

IterationRecord() - Constructor for class loci.poi.hssf.record.IterationRecord

IterationRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.IterationRecord

Constructs an Iteration record and sets its fields appropriately.

iterator() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

Returns an Iterator over the TIFF fields.

iterator() - Method in class loci.common.IniList

iterator() - Method in class loci.poi.hssf.model.WorkbookRecordList

iterator() - Method in class loci.poi.util.IntMapper

ITKBridgePipes - Class in loci.formats.itk

ITKBridgePipes is a Java console application that listens for "commands" on stdin and issues results on stdout.

ITKBridgePipes() - Constructor for class loci.formats.itk.ITKBridgePipes

IvisionReader - Class in loci.formats.in

IvisionReader is the file format reader for IVision (.IPM) files.

IvisionReader() - Constructor for class loci.formats.in.IvisionReader

Constructs a new Ivision reader.

J

J2KImageReader - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is the Java Image IO plugin reader for JPEG 2000 JP2 image file format.

J2KImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Constructs J2KImageReader from the provided ImageReaderSpi.

J2KImageReaderResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KImageReaderResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources

J2KImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

J2KImageReadParam - Class in com.sun.media.imageio.plugins.jpeg2000

A subclass of ImageReadParam for reading images in the JPEG 2000 format.

J2KImageReadParam() - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Constructs a default instance of J2KImageReadParam.

J2KImageReadParamJava - Class in com.sun.media.imageioimpl.plugins.jpeg2000

A subclass of ImageReadParam for reading images in the JPEG 2000 format.

J2KImageReadParamJava() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Constructs a default instance of J2KImageReadParamJava.

J2KImageReadParamJava(ImageReadParam) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

J2KImageWriteParam - Class in com.sun.media.imageio.plugins.jpeg2000

A subclass of ImageWriteParam for writing images in the JPEG 2000 format.

J2KImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Constructor which sets the Locale.

J2KImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Constructs a J2KImageWriteParam object with default values for all parameters.

J2KImageWriteParamJava - Class in com.sun.media.imageioimpl.plugins.jpeg2000

A subclass of ImageWriteParam for writing images in the JPEG 2000 format.

J2KImageWriteParamJava(RenderedImage, Locale) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructor to set locales.

J2KImageWriteParamJava(IIOImage, ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructor to set locales.

J2KImageWriteParamJava() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructs a J2KImageWriteParamJava object with default values for all parameters.

J2KImageWriteParamJava(RenderedImage) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructs a J2KImageWriteParamJava object with default values for all parameters.

J2KImageWriteParamJava(Raster) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructs a J2KImageWriteParamJava object with default values for all parameters.

J2KImageWriter - Class in com.sun.media.imageioimpl.plugins.jpeg2000

The Java Image IO plugin writer for encoding a RenderedImage into a JPEG 2000 part 1 file (JP2) format.

J2KImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

Constructs J2KImageWriter based on the provided ImageWriterSpi.

J2KImageWriterResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KImageWriterResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources

J2KImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

J2KMetadata - Class in com.sun.media.imageioimpl.plugins.jpeg2000

Metadata for the J2K plug-in.

J2KMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructor containing code shared by other constructors.

J2KMetadata(ImageInputStream, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

J2KMetadata(ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructs a default stream J2KMetadata object appropriate for the given write parameters.

J2KMetadata(ImageTypeSpecifier, ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructs a default image J2KMetadata object appropriate for the given image type and write parameters.

J2KMetadata(ColorModel, SampleModel, int, int, ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructs a default image J2KMetadata object appropriate for the given image type and write parameters.

J2KMetadataFormat - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources

J2KReadState - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KReadState(ImageInputStream, J2KImageReadParamJava, J2KMetadata, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Constructs J2KReadState.

J2KReadState(ImageInputStream, J2KImageReadParamJava, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Constructs J2KReadState.

J2KRenderedImage - Class in com.sun.media.imageioimpl.plugins.jpeg2000

J2KRenderedImage(ImageInputStream, J2KImageReadParamJava, J2KMetadata, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

J2KRenderedImage(ImageInputStream, J2KImageReadParamJava, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

J2KRenderedImage(J2KReadState) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

JAIIIOService - Interface in loci.formats.services

Interface defining methods for reading data using JAI Image I/O.

JAIIIOServiceImpl - Class in loci.formats.services

Implementation of JAIIIOService for reading and writing JPEG-2000 data.

JAIIIOServiceImpl() - Constructor for class loci.formats.services.JAIIIOServiceImpl

Default constructor.

JavaWriter - Class in loci.formats.out

JavaWriter is the file format writer for Java source code.

JavaWriter() - Constructor for class loci.formats.out.JavaWriter

JEOLReader - Class in loci.formats.in

JEOLReader is the file format reader for JEOL files.

JEOLReader() - Constructor for class loci.formats.in.JEOLReader

Constructs a new JEOL reader.

jj2000.j2k - package jj2000.j2k

jj2000.j2k.codestream - package jj2000.j2k.codestream

jj2000.j2k.codestream.reader - package jj2000.j2k.codestream.reader

jj2000.j2k.codestream.writer - package jj2000.j2k.codestream.writer

jj2000.j2k.decoder - package jj2000.j2k.decoder

jj2000.j2k.entropy - package jj2000.j2k.entropy

jj2000.j2k.entropy.decoder - package jj2000.j2k.entropy.decoder

jj2000.j2k.entropy.encoder - package jj2000.j2k.entropy.encoder

jj2000.j2k.fileformat - package jj2000.j2k.fileformat

jj2000.j2k.fileformat.reader - package jj2000.j2k.fileformat.reader

jj2000.j2k.fileformat.writer - package jj2000.j2k.fileformat.writer

jj2000.j2k.image - package jj2000.j2k.image

jj2000.j2k.image.forwcomptransf - package jj2000.j2k.image.forwcomptransf

jj2000.j2k.image.input - package jj2000.j2k.image.input

jj2000.j2k.image.invcomptransf - package jj2000.j2k.image.invcomptransf

jj2000.j2k.io - package jj2000.j2k.io

jj2000.j2k.quantization - package jj2000.j2k.quantization

jj2000.j2k.quantization.dequantizer - package jj2000.j2k.quantization.dequantizer

jj2000.j2k.quantization.quantizer - package jj2000.j2k.quantization.quantizer

jj2000.j2k.roi - package jj2000.j2k.roi

jj2000.j2k.roi.encoder - package jj2000.j2k.roi.encoder

jj2000.j2k.util - package jj2000.j2k.util

jj2000.j2k.wavelet - package jj2000.j2k.wavelet

jj2000.j2k.wavelet.analysis - package jj2000.j2k.wavelet.analysis

jj2000.j2k.wavelet.synthesis - package jj2000.j2k.wavelet.synthesis

JJ2KExceptionHandler - Class in jj2000.j2k

This class handles exceptions.

JJ2KExceptionHandler() - Constructor for class jj2000.j2k.JJ2KExceptionHandler

JJ2KInfo - Class in jj2000.j2k

This class holds general JJ2000 information, such as the version number, copyright, contact address, etc.

JJ2KInfo() - Constructor for class jj2000.j2k.JJ2KInfo

join(AbstractEscherHolderRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Big drawing group records are split but it's easier to deal with them as a whole group so we need to join them together.

Join - Class in mdbtools.dbengine.sql

Join() - Constructor for class mdbtools.dbengine.sql.Join

JP2_HEADER_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

JP2_SIGNATURE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

Main boxes

JPEG2000BoxType - Enum in loci.formats.codec

An enumeration of JPEG 2000 box types.

JPEG2000Codec - Class in loci.formats.codec

This class implements JPEG 2000 compression and decompression.

JPEG2000Codec() - Constructor for class loci.formats.codec.JPEG2000Codec

JPEG2000CodecOptions - Class in loci.formats.codec

Options for compressing and decompressing JPEG-2000 data.

JPEG2000CodecOptions() - Constructor for class loci.formats.codec.JPEG2000CodecOptions

Creates a new instance.

JPEG2000CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.JPEG2000CodecOptions

Creates a new instance with options.

Jpeg2000GrindTest - Class in loci.tests.testng

Test grinding in a multi-threaded environment a JPEG-2000 encoded TIFF.

Jpeg2000GrindTest() - Constructor for class loci.tests.testng.Jpeg2000GrindTest

JPEG2000MetadataParser - Class in loci.formats.in

A parser for JPEG 2000 metadata.

JPEG2000MetadataParser(RandomAccessInputStream) - Constructor for class loci.formats.in.JPEG2000MetadataParser

Constructs a new JPEG2000MetadataParser.

JPEG2000MetadataParser(RandomAccessInputStream, long) - Constructor for class loci.formats.in.JPEG2000MetadataParser

Constructs a new JPEG2000MetadataParser.

JPEG2000Reader - Class in loci.formats.in

JPEG2000Reader is the file format reader for JPEG-2000 images.

JPEG2000Reader() - Constructor for class loci.formats.in.JPEG2000Reader

Constructs a new JPEG2000Reader.

JPEG2000SegmentMarker - Enum in loci.formats.codec

An enumeration of JPEG 2000 segment markers.

JPEG2000Writer - Class in loci.formats.out

JPEG2000Writer is the file format writer for JPEG2000 files.

JPEG2000Writer() - Constructor for class loci.formats.out.JPEG2000Writer

Creates a new instance.

JPEG_AC_TABLES - Static variable in class loci.formats.tiff.IFD

JPEG_DC_TABLES - Static variable in class loci.formats.tiff.IFD

JPEG_INTERCHANGE_FORMAT - Static variable in class loci.formats.tiff.IFD

JPEG_INTERCHANGE_FORMAT_LENGTH - Static variable in class loci.formats.tiff.IFD

JPEG_LOSSLESS_PREDICTORS - Static variable in class loci.formats.tiff.IFD

JPEG_POINT_TRANSFORMS - Static variable in class loci.formats.tiff.IFD

JPEG_PROC - Static variable in class loci.formats.tiff.IFD

JPEG_PROC_BASELINE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "JPEGProc" tag.

JPEG_PROC_LOSSLESS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "JPEGProc" tag.

JPEG_Q_TABLES - Static variable in class loci.formats.tiff.IFD

JPEG_RESTART_INTERVAL - Static variable in class loci.formats.tiff.IFD

JPEG_TABLES - Static variable in class loci.formats.tiff.IFD

JPEGCodec - Class in loci.formats.codec

This class implements JPEG compression and decompression.

JPEGCodec() - Constructor for class loci.formats.codec.JPEGCodec

JPEGParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

ImageWriteParam for JPEG writer.

JPEGParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

JPEGReader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

JPEGReader - Class in loci.formats.in

JPEGReader is the file format reader for JPEG images.

JPEGReader() - Constructor for class loci.formats.in.JPEGReader

Constructs a new JPEGReader.

JPEGStreamMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Stream metadata equivalent to a tables-only stream such as in the JPEGTables.

JPEGTileDecoder - Class in loci.formats.codec

Source code: Trac, Gitweb

JPEGTileDecoder() - Constructor for class loci.formats.codec.JPEGTileDecoder

JPEGTurboService - Interface in loci.formats.services

Source code: Trac, Gitweb

JPEGTurboServiceImpl - Class in loci.formats.services

Based upon the NDPI to OME-TIFF converter by Matthias Baldauf: http://matthias-baldauf.at/software/ndpi_converter/ Source code: Trac, Gitweb

JPEGTurboServiceImpl() - Constructor for class loci.formats.services.JPEGTurboServiceImpl

JPEGWriter - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

The JPEG writer.

JPEGWriter - Class in loci.formats.out

JPEGWriter is the file format writer for JPEG files.

JPEGWriter() - Constructor for class loci.formats.out.JPEGWriter

JPKReader - Class in loci.formats.in

JPKReader is the file format reader for JPK Instruments files.

JPKReader() - Constructor for class loci.formats.in.JPKReader

Constructs a new JPK reader.

JPXReader - Class in loci.formats.in

JPXReader is the file format reader for JPX (3D JPEG-2000) images.

JPXReader() - Constructor for class loci.formats.in.JPXReader

Constructs a new JPX Reader.

JUSTIFY - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

jvm64Bit - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating 64-bit JVM (does not support QTJava).

JVM_64BIT_MSG - Static variable in class loci.formats.gui.LegacyQTTools

K

key - Variable in class loci.plugins.prefs.Option

Key name for ImageJ preferences file.

KEY_AUTOSCALE - Static variable in class loci.plugins.in.ImporterOptions

KEY_COLOR_MODE - Static variable in class loci.plugins.in.ImporterOptions

KEY_CONCATENATE - Static variable in class loci.plugins.in.ImporterOptions

KEY_CROP - Static variable in class loci.plugins.in.ImporterOptions

KEY_FIRST - Static variable in class loci.plugins.in.ImporterOptions

KEY_FORCE_THUMBS - Static variable in class loci.plugins.in.ImporterOptions

KEY_GROUP_FILES - Static variable in class loci.plugins.in.ImporterOptions

KEY_ID - Static variable in class loci.plugins.in.ImporterOptions

KEY_LOCATION - Static variable in class loci.plugins.in.ImporterOptions

KEY_OPEN_ALL_SERIES - Static variable in class loci.plugins.in.ImporterOptions

KEY_PREFIX - Static variable in class loci.plugins.prefs.Option

Prefix to use for all LOCI plugins preferences.

KEY_QUIET - Static variable in class loci.plugins.in.ImporterOptions

KEY_SHOW_METADATA - Static variable in class loci.plugins.in.ImporterOptions

KEY_SHOW_OME_XML - Static variable in class loci.plugins.in.ImporterOptions

KEY_SHOW_ROIS - Static variable in class loci.plugins.in.ImporterOptions

KEY_SPECIFY_RANGES - Static variable in class loci.plugins.in.ImporterOptions

KEY_SPLIT_C - Static variable in class loci.plugins.in.ImporterOptions

KEY_SPLIT_T - Static variable in class loci.plugins.in.ImporterOptions

KEY_SPLIT_Z - Static variable in class loci.plugins.in.ImporterOptions

KEY_STACK_FORMAT - Static variable in class loci.plugins.in.ImporterOptions

KEY_STACK_ORDER - Static variable in class loci.plugins.in.ImporterOptions

KEY_STITCH_TILES - Static variable in class loci.plugins.in.ImporterOptions

KEY_SWAP_DIMS - Static variable in class loci.plugins.in.ImporterOptions

KEY_UNGROUP_FILES - Static variable in class loci.plugins.in.ImporterOptions

KEY_UPGRADE_CHECK - Static variable in class loci.plugins.in.ImporterOptions

KEY_VIRTUAL - Static variable in class loci.plugins.in.ImporterOptions

KEY_WINDOWLESS - Static variable in class loci.plugins.in.ImporterOptions

keyPressed(KeyEvent) - Method in class loci.formats.gui.ImageViewer

Handles key presses.

keyReleased(KeyEvent) - Method in class loci.formats.gui.ImageViewer

keys(Hashtable<String, Object>) - Static method in class loci.formats.MetadataTools

Gets a sorted list of keys from the given hashtable.

keySet() - Method in class loci.common.IniTable

keySet() - Method in class loci.poi.util.BinaryTree

Returns a set view of the keys contained in this map.

keySetByValue() - Method in class loci.poi.util.BinaryTree

Returns a set view of the keys contained in this map.

keyTyped(KeyEvent) - Method in class loci.formats.gui.ImageViewer

KH - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the high-pass subband normalization factor

KH - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the high-pass subband normalization factor

KHOROS_MAGIC_BYTES - Static variable in class loci.formats.in.KhorosReader

KhorosReader - Class in loci.formats.in

Reader for Khoros XV files.

KhorosReader() - Constructor for class loci.formats.in.KhorosReader

Constructs a new Khoros reader.

kind - Variable in class loci.formats.out.ImageIOWriter

kkd_pg - Variable in class mdbtools.libmdb.MdbCatalogEntry

kkd_rowid - Variable in class mdbtools.libmdb.MdbCatalogEntry

KL - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the low-pass subband normalization factor

KL - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the low-pass subband normalization factor

KNOWN_VERSIONS - Static variable in class loci.formats.in.LiFlimReader

KodakReader - Class in loci.formats.in

KodakReader is the file format reader for Kodak Molecular Imaging .bip files.

KodakReader() - Constructor for class loci.formats.in.KodakReader

Constructs a new Kodak reader.

kryo - Variable in class loci.formats.Memoizer.KryoDeser

L

L2DReader - Class in loci.formats.in

L2DReader is the file format reader for Li-Cor L2D datasets.

L2DReader() - Constructor for class loci.formats.in.L2DReader

Construct a new L2D reader.

l2Norm - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The L2-norm of the synthesis basis waveform of this subband, applicable to "leafs" only.

label - Variable in class loci.plugins.prefs.Option

Label describing the option, for use with ImageJ dialogs.

Label - Class in ome.xml.model

Label() - Constructor for class ome.xml.model.Label

Default constructor.

Label(Element, OMEModel) - Constructor for class ome.xml.model.Label

Constructs Label recursively from an XML DOM tree.

Label(Label) - Constructor for class ome.xml.model.Label

Copy constructor.

LabelRecord - Class in loci.poi.hssf.record

Label Record - read only support for strings stored directly in the cell..

LabelRecord() - Constructor for class loci.poi.hssf.record.LabelRecord

Creates new LabelRecord

LabelRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LabelRecord

Constructs an Label record and sets its fields appropriately.

labels - Variable in class loci.formats.Modulo

labels - Variable in class loci.plugins.config.FormatEntry

LabelSSTRecord - Class in loci.poi.hssf.record

Title: Label SST Record

LabelSSTRecord() - Constructor for class loci.poi.hssf.record.LabelSSTRecord

LabelSSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LabelSSTRecord

Constructs an LabelSST record and sets its fields appropriately.

Laser - Class in ome.xml.model

Laser() - Constructor for class ome.xml.model.Laser

Default constructor.

Laser(Element, OMEModel) - Constructor for class ome.xml.model.Laser

Constructs Laser recursively from an XML DOM tree.

Laser(Laser) - Constructor for class ome.xml.model.Laser

Copy constructor.

LaserMedium - Enum in ome.xml.model.enums

LaserMediumEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for LaserMedium.

LaserMediumEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LaserMediumEnumHandler

LaserType - Enum in ome.xml.model.enums

LaserTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for LaserType.

LaserTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LaserTypeEnumHandler

lastId - Variable in class loci.formats.gui.PreviewPane

Last ID loaded.

lastIndexOf(Object) - Method in class loci.common.IniList

lastIndexOf(double) - Method in class loci.poi.util.DoubleList

Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.

lastIndexOf(int) - Method in class loci.poi.util.IntList

Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.

lastIndexOf(short) - Method in class loci.poi.util.ShortList

Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.

lastLengthPos - Variable in class loci.poi.hssf.record.UnicodeString.UnicodeRecordStats

lastModified() - Method in class loci.common.Location

Return the last modification time of this file, in milliseconds since the UNIX epoch.

lastModified() - Method in class ome.scifio.io.Location

Return the last modification time of this file, in milliseconds since the UNIX epoch.

lastPlane - Variable in class loci.formats.in.BaseZeissReader

lastPlane - Variable in class loci.formats.in.MinimalTiffReader

LATEST_VERSION - Static variable in class loci.formats.services.OMEXMLServiceImpl

Latest OME-XML version namespace.

LATITUDE_REF_NORTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLatitudeRef" and "GPSDestLatitudeRef" tags.

LATITUDE_REF_SOUTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLatitudeRef" and "GPSDestLatitudeRef" tags.

layerIdx - Variable in class jj2000.j2k.codestream.reader.PktInfo

The layer associated with the current code-block in this packet.

layers - Variable in class loci.formats.in.BaseZeissReader

layers - Variable in class loci.formats.in.ZeissTIFFHandler

LayersInfo - Class in jj2000.j2k.entropy.encoder

This class stores the specification of a layer distribution in the bit stream.

LayersInfo(float) - Constructor for class jj2000.j2k.entropy.encoder.LayersInfo

Creates a new LayersInfo object.

LAYOUT_TABLE - Static variable in class loci.formats.in.LiFlimReader

lblockNo - Variable in class loci.formats.in.SDTInfo

Long blockNo - see remarks below.

lcm(int, int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Least Common Multiple (LCM) of two strictly positive integer numbers.

lcm(int[]) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Least Common Multiple (LCM) of several positive integer numbers.

lcoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

lcod - Variable in class jj2000.j2k.codestream.HeaderInfo.COD

lcom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM

lcrg - Variable in class jj2000.j2k.codestream.HeaderInfo.CRG

lcs - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The length calculation specifications

LCS_CALIBRATED_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

LCS_sRGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

LCS_WINDOWS_COLOR_SPACE - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

Leader - Class in ome.xml.model

Leader() - Constructor for class ome.xml.model.Leader

Default constructor.

Leader(Element, OMEModel) - Constructor for class ome.xml.model.Leader

Constructs Leader recursively from an XML DOM tree.

Leader(Leader) - Constructor for class ome.xml.model.Leader

Copy constructor.

LEAST_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Least Dots

LEFT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

LeftMargin - Static variable in class loci.poi.hssf.model.Sheet

LeftMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

LeftMarginRecord - Class in loci.poi.hssf.record

Record for the left margin.

LeftMarginRecord() - Constructor for class loci.poi.hssf.record.LeftMarginRecord

LeftMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LeftMarginRecord

Constructs a LeftMargin record and sets its fields appropriately.

legacy - Variable in class loci.formats.out.QTWriter

Legacy QuickTime writer.

LegacyAdapter<L,M> - Interface in loci.legacy.adapter

This interface represents adapter classes for delegating between equivalent "Legacy" and "Modern" classes.

LegacyND2Reader - Class in loci.formats.in

LegacyND2Reader is a file format reader for Nikon ND2 files that uses the Nikon ND2 SDK - it is only usable on Windows machines.

LegacyND2Reader() - Constructor for class loci.formats.in.LegacyND2Reader

LegacyQTReader - Class in loci.formats.in

LegacyQTReader is a file format reader for QuickTime movie files.

LegacyQTReader() - Constructor for class loci.formats.in.LegacyQTReader

Constructs a new QT reader.

LegacyQTTools - Class in loci.formats.gui

Utility class for working with QuickTime for Java.

LegacyQTTools() - Constructor for class loci.formats.gui.LegacyQTTools

LegacyQTWriter - Class in loci.formats.out

LegacyQTWriter is a file format writer for QuickTime movies.

LegacyQTWriter() - Constructor for class loci.formats.out.LegacyQTWriter

legacyReader - Variable in class loci.formats.DelegateReader

Legacy reader.

legacyReaderInitialized - Variable in class loci.formats.DelegateReader

Flag indicating that the legacy reader was successfully initialized.

LEGAL_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

LegendRecord - Class in loci.poi.hssf.record

Defines a legend for a chart.

LegendRecord() - Constructor for class loci.poi.hssf.record.LegendRecord

LegendRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LegendRecord

Constructs a Legend record and sets its fields appropriately.

LEI_SUFFIX - Static variable in class loci.formats.in.LeicaReader

LeicaHandler - Class in loci.formats.in

SAX handler for parsing XML in Leica LIF and Leica TCS files.

LeicaHandler(MetadataStore, MetadataLevel) - Constructor for class loci.formats.in.LeicaHandler

LeicaReader - Class in loci.formats.in

LeicaReader is the file format reader for Leica files.

LeicaReader() - Constructor for class loci.formats.in.LeicaReader

Constructs a new Leica reader.

LeicaSCNReader - Class in loci.formats.in

LeicaSCNReader is the file format reader for Leica SCN TIFF files.

LeicaSCNReader() - Constructor for class loci.formats.in.LeicaSCNReader

Constructs a new LeicaSCN reader.

len - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Length of each piece of code-block's codewords

length() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

Returns the number of bytes currently in the FileChannel.

length() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Returns the number of bytes currently in the FileChannel.

length() - Method in class com.sun.media.imageio.stream.RawImageInputStream

length() - Method in class com.sun.media.imageio.stream.SegmentedImageInputStream

length - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Box length, extra length, type and content data array

length() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Returns the length of the data stream.

length() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the current length of the stream, in bytes, taking into account any buffering.

length() - Method in interface jj2000.j2k.io.RandomAccessIO

Returns the current length of the stream, in bytes, taking into account any buffering.

length() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the length of the stream.

length() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper

length() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper

length() - Method in class loci.common.ByteArrayHandle

length() - Method in class loci.common.FileHandle

length() - Method in interface loci.common.IRandomAccess

Returns the length of this stream.

length() - Method in class loci.common.Location

length() - Method in class loci.common.NIOFileHandle

length() - Method in class loci.common.NIOInputStream

Gets the number of bytes in the file.

length() - Method in class loci.common.RandomAccessInputStream

Gets the number of bytes in the file.

length() - Method in class loci.common.RandomAccessOutputStream

Returns the length of the file.

length() - Method in class loci.common.StreamHandle

length() - Method in class loci.formats.cache.CacheStrategy

Shortcut for computing total number of positions.

length() - Method in class loci.formats.Modulo

LENGTH - Static variable in class loci.poi.hpsf.ClassID

The number of bytes occupied by this object in the byte stream.

length() - Method in class loci.poi.hpsf.ClassID

length() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

length() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

Length - Class in mdbtools.dbengine.functions

Length is the sql length function When passed a string it returns the length of the string

Length() - Constructor for class mdbtools.dbengine.functions.Length

length() - Method in class mdbtools.examples.MemoryRandomAccess

length() - Method in class mdbtools.jdbc2.File

length() - Method in interface mdbtools.publicapi.RandomAccess

length() - Method in class ome.scifio.io.ByteArrayHandle

length() - Method in class ome.scifio.io.FileHandle

length() - Method in interface ome.scifio.io.IRandomAccess

Returns the length of this stream.

length() - Method in class ome.scifio.io.Location

length() - Method in class ome.scifio.io.NIOFileHandle

length() - Method in class ome.scifio.io.NIOInputStream

Gets the number of bytes in the file.

length - Variable in class ome.scifio.io.RandomAccessInputStream

length() - Method in class ome.scifio.io.RandomAccessInputStream

Gets the number of bytes in the file.

length() - Method in class ome.scifio.io.RandomAccessOutputStream

Returns the length of the file.

length - Variable in class ome.scifio.io.StreamHandle

Length of the stream.

length() - Method in class ome.scifio.io.StreamHandle

LENGTH_0 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 0 bytes.

LENGTH_2 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 2 bytes.

LENGTH_4 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 4 bytes.

LENGTH_8 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 8 bytes.

LENGTH_LAZY - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Identifier for the lazy length calculation.

LENGTH_LAZY_GOOD - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Identifier for a very simple length calculation.

LENGTH_NEAR_OPT - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Identifier for the near optimal length calculation.

LENGTH_UNKNOWN - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length that is unknown to HPSF yet.

LENGTH_VARIABLE - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a variable length.

lengths - Variable in class loci.formats.cache.CacheStrategy

Length of each dimensional axis.

LEO_TAG - Static variable in class loci.formats.in.LEOReader

LEOReader - Class in loci.formats.in

LEOReader is the file format reader for LEO EM files.

LEOReader() - Constructor for class loci.formats.in.LEOReader

Constructs a new LEO reader.

LESS_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Less Dots

LESS_THAN - Static variable in class mdbtools.dbengine.sql.Equation

LESS_THAN_OR_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation

LessEqualPtg - Class in loci.poi.hssf.record.formula

Ptg class to implement less than or equal

LessEqualPtg() - Constructor for class loci.poi.hssf.record.formula.LessEqualPtg

Creates new LessEqualPtg

LessEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.LessEqualPtg

LessThanPtg - Class in loci.poi.hssf.record.formula

Less than operator PTG "<".

LessThanPtg() - Constructor for class loci.poi.hssf.record.formula.LessThanPtg

Constructor.

LessThanPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.LessThanPtg

Constructor.

LETTER_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

level - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

level - Variable in class jj2000.j2k.wavelet.Subband

The level in the tree to which this subband belongs, which is the number of wavelet decompositions performed to produce this subband.

lh - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child LH

libClass - Variable in class loci.plugins.config.LibraryEntry

LibraryChecker - Class in loci.plugins.util

Utility methods for verifying that classes are present and versions are correct.

LibraryChecker.Library - Enum in loci.plugins.util

List of possible libraries for which to check.

LibraryEntry - Class in loci.plugins.config

A list entry for the configuration window's Libraries tab.

LibraryEntry(PrintWriter, HashMap<String, String>) - Constructor for class loci.plugins.config.LibraryEntry

LibraryEntry(PrintWriter, String, String, String, String, String, String, String) - Constructor for class loci.plugins.config.LibraryEntry

license - Variable in class loci.plugins.config.LibraryEntry

LICENSE_PROPERTY - Static variable in class loci.formats.services.LuraWaveServiceImpl

System property to check for the LuraWave license code.

LIF_MAGIC_BYTE - Static variable in class loci.formats.in.LIFReader

LIF_MEMORY_BYTE - Static variable in class loci.formats.in.LIFReader

LIFETIME - Static variable in class loci.formats.FormatTools

Identifies the Lifetime dimensional type, representing a dimension consisting of a lifetime histogram.

LIFF_MAGIC_BYTES - Static variable in class loci.formats.in.OpenlabReader

LiFlimReader - Class in loci.formats.in

LiFlimReader is the file format reader for LI-FLIM files.

LiFlimReader() - Constructor for class loci.formats.in.LiFlimReader

Constructs a new LI-FLIM reader.

LIFReader - Class in loci.formats.in

LIFReader is the file format reader for Leica LIF files.

LIFReader() - Constructor for class loci.formats.in.LIFReader

Constructs a new Leica LIF reader.

LIGHT_SOURCE - Static variable in class loci.formats.tiff.IFD

LIGHT_SOURCE_CLOUDY_WEATHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_COOL_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D50 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D55 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D65 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D75 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_DAY_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_DAYLIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_DAYLIGHT_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_FINE_WEATHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_FLASH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_ISO_STUDIO_TUNGSTEN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_OTHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_SHADE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_STANDARD_LIGHT_A - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_STANDARD_LIGHT_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_STANDARD_LIGHT_C - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_TUNGSTEN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LightEmittingDiode - Class in ome.xml.model

LightEmittingDiode() - Constructor for class ome.xml.model.LightEmittingDiode

Default constructor.

LightEmittingDiode(Element, OMEModel) - Constructor for class ome.xml.model.LightEmittingDiode

Constructs LightEmittingDiode recursively from an XML DOM tree.

LightEmittingDiode(LightEmittingDiode) - Constructor for class ome.xml.model.LightEmittingDiode

Copy constructor.

LightPath - Class in ome.xml.model

LightPath() - Constructor for class ome.xml.model.LightPath

Default constructor.

LightPath(Element, OMEModel) - Constructor for class ome.xml.model.LightPath

Constructs LightPath recursively from an XML DOM tree.

LightPath(LightPath) - Constructor for class ome.xml.model.LightPath

Copy constructor.

LightSource - Class in ome.xml.model

LightSource() - Constructor for class ome.xml.model.LightSource

Default constructor.

LightSource(Element, OMEModel) - Constructor for class ome.xml.model.LightSource

Constructs LightSource recursively from an XML DOM tree.

LightSource(LightSource) - Constructor for class ome.xml.model.LightSource

Copy constructor.

LightSourceSettings - Class in ome.xml.model

LightSourceSettings() - Constructor for class ome.xml.model.LightSourceSettings

Default constructor.

LightSourceSettings(Element, OMEModel) - Constructor for class ome.xml.model.LightSourceSettings

Constructs LightSourceSettings recursively from an XML DOM tree.

LightSourceSettings(LightSourceSettings) - Constructor for class ome.xml.model.LightSourceSettings

Copy constructor.

LIMReader - Class in loci.formats.in

LIMReader is the file format reader for Laboratory Imaging/Nikon LIM files.

LIMReader() - Constructor for class loci.formats.in.LIMReader

Constructs a new LIM reader.

Line - Class in ome.xml.model

Line() - Constructor for class ome.xml.model.Line

Default constructor.

Line(Element, OMEModel) - Constructor for class ome.xml.model.Line

Constructs Line recursively from an XML DOM tree.

Line(Line) - Constructor for class ome.xml.model.Line

Copy constructor.

LINE_OF_STRAIGHT_SEGMENTS - Static variable in class loci.poi.ddf.EscherShapePathProperty

LINE_PATTERN_DARK_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_DASH - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_DASH_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_LIGHT_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_MEDIUM_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_NONE - Static variable in class loci.poi.hssf.record.LineFormatRecord

LINE_PATTERN_SOLID - Static variable in class loci.poi.hssf.record.LineFormatRecord

LineCap - Enum in ome.xml.model.enums

LineCapEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for LineCap.

LineCapEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LineCapEnumHandler

linediv - Variable in class loci.formats.in.SDTInfo

Line predivider = 2 ** (linediv).

LineFormatRecord - Class in loci.poi.hssf.record

Describes a line format record.

LineFormatRecord() - Constructor for class loci.poi.hssf.record.LineFormatRecord

LineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LineFormatRecord

Constructs a LineFormat record and sets its fields appropriately.

LineShape - Class in loci.poi.hssf.model

Represents a line shape and creates all the line specific low level records.

LINESTYLE__ANYLINE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__ARROWHEADSOK - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__BACKCOLOR - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__COLOR - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__CRMOD - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLBLIP - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLBLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLBLIPNAME - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLDZTYPE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLHEIGHT - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__FILLWIDTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__HITLINETEST - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEDASHING - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEDASHSTYLE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEENDARROWHEAD - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEENDARROWLENGTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEENDARROWWIDTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEENDCAPSTYLE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEESTARTARROWLENGTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEFILLSHAPE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEJOINSTYLE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEMITERLIMIT - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINESTARTARROWHEAD - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINESTARTARROWWIDTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINESTYLE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINETYPE - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__LINEWIDTH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__NOLINEDRAWDASH - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE__OPACITY - Static variable in class loci.poi.ddf.EscherProperties

LINESTYLE_DASHDOTDOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DASHDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DASHDOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DASHGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DASHSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_DOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_LONGDASHDOTDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_LONGDASHDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_LONGDASHGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINESTYLE_SOLID - Static variable in class loci.poi.hssf.usermodel.HSSFShape

lineTo(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

LINEWIDTH_DEFAULT - Static variable in class loci.poi.hssf.usermodel.HSSFShape

LINEWIDTH_ONE_PT - Static variable in class loci.poi.hssf.usermodel.HSSFShape

link(Reference, OMEModelObject) - Method in class ome.xml.model.AbstractOMEModelObject

link(Reference, OMEModelObject) - Method in class ome.xml.model.AffineTransform

link(Reference, OMEModelObject) - Method in class ome.xml.model.Annotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.AnnotationRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Arc

link(Reference, OMEModelObject) - Method in class ome.xml.model.BasicAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.BinaryFile

link(Reference, OMEModelObject) - Method in class ome.xml.model.BinaryOnly

link(Reference, OMEModelObject) - Method in class ome.xml.model.BinData

link(Reference, OMEModelObject) - Method in class ome.xml.model.BooleanAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Channel

link(Reference, OMEModelObject) - Method in class ome.xml.model.ChannelRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.CommentAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Dataset

link(Reference, OMEModelObject) - Method in class ome.xml.model.DatasetRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Detector

link(Reference, OMEModelObject) - Method in class ome.xml.model.DetectorSettings

link(Reference, OMEModelObject) - Method in class ome.xml.model.Dichroic

link(Reference, OMEModelObject) - Method in class ome.xml.model.DichroicRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.DoubleAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Ellipse

link(Reference, OMEModelObject) - Method in class ome.xml.model.EmissionFilterRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExcitationFilterRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Experiment

link(Reference, OMEModelObject) - Method in class ome.xml.model.Experimenter

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterGroup

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterGroupRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimentRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.External

link(Reference, OMEModelObject) - Method in class ome.xml.model.Filament

link(Reference, OMEModelObject) - Method in class ome.xml.model.FileAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Filter

link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterSet

link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterSetRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Image

link(Reference, OMEModelObject) - Method in class ome.xml.model.ImageRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.ImagingEnvironment

link(Reference, OMEModelObject) - Method in class ome.xml.model.Instrument

link(Reference, OMEModelObject) - Method in class ome.xml.model.InstrumentRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Label

link(Reference, OMEModelObject) - Method in class ome.xml.model.Laser

link(Reference, OMEModelObject) - Method in class ome.xml.model.Leader

link(Reference, OMEModelObject) - Method in class ome.xml.model.LightEmittingDiode

link(Reference, OMEModelObject) - Method in class ome.xml.model.LightPath

link(Reference, OMEModelObject) - Method in class ome.xml.model.LightSource

link(Reference, OMEModelObject) - Method in class ome.xml.model.LightSourceSettings

link(Reference, OMEModelObject) - Method in class ome.xml.model.Line

link(Reference, OMEModelObject) - Method in class ome.xml.model.ListAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.LongAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.ManufacturerSpec

link(Reference, OMEModelObject) - Method in class ome.xml.model.Mask

link(Reference, OMEModelObject) - Method in class ome.xml.model.MetadataOnly

link(Reference, OMEModelObject) - Method in class ome.xml.model.MicrobeamManipulation

link(Reference, OMEModelObject) - Method in class ome.xml.model.MicrobeamManipulationRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Microscope

link(Reference, OMEModelObject) - Method in class ome.xml.model.NumericAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Objective

link(Reference, OMEModelObject) - Method in class ome.xml.model.ObjectiveSettings

link(Reference, OMEModelObject) - Method in class ome.xml.model.OME

link(Reference, OMEModelObject) - Method in interface ome.xml.model.OMEModelObject

Link a given OME model object to this model object.

link(Reference, OMEModelObject) - Method in class ome.xml.model.Pixels

link(Reference, OMEModelObject) - Method in class ome.xml.model.Plane

link(Reference, OMEModelObject) - Method in class ome.xml.model.Plate

link(Reference, OMEModelObject) - Method in class ome.xml.model.PlateAcquisition

link(Reference, OMEModelObject) - Method in class ome.xml.model.PlateRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Point

link(Reference, OMEModelObject) - Method in class ome.xml.model.Polygon

link(Reference, OMEModelObject) - Method in class ome.xml.model.Polyline

link(Reference, OMEModelObject) - Method in class ome.xml.model.Project

link(Reference, OMEModelObject) - Method in class ome.xml.model.ProjectRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Pump

link(Reference, OMEModelObject) - Method in class ome.xml.model.Reagent

link(Reference, OMEModelObject) - Method in class ome.xml.model.ReagentRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Rectangle

link(Reference, OMEModelObject) - Method in class ome.xml.model.Reference

link(Reference, OMEModelObject) - Method in class ome.xml.model.Rights

link(Reference, OMEModelObject) - Method in class ome.xml.model.ROI

link(Reference, OMEModelObject) - Method in class ome.xml.model.ROIRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.Screen

link(Reference, OMEModelObject) - Method in class ome.xml.model.Settings

link(Reference, OMEModelObject) - Method in class ome.xml.model.Shape

link(Reference, OMEModelObject) - Method in class ome.xml.model.StageLabel

link(Reference, OMEModelObject) - Method in class ome.xml.model.StructuredAnnotations

link(Reference, OMEModelObject) - Method in class ome.xml.model.TagAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.TermAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.TextAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.TiffData

link(Reference, OMEModelObject) - Method in class ome.xml.model.TimestampAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.TransmittanceRange

link(Reference, OMEModelObject) - Method in class ome.xml.model.TypeAnnotation

link(Reference, OMEModelObject) - Method in class ome.xml.model.Union

link(Reference, OMEModelObject) - Method in class ome.xml.model.UUID

link(Reference, OMEModelObject) - Method in class ome.xml.model.Well

link(Reference, OMEModelObject) - Method in class ome.xml.model.WellSample

link(Reference, OMEModelObject) - Method in class ome.xml.model.WellSampleRef

link(Reference, OMEModelObject) - Method in class ome.xml.model.XMLAnnotation

LINK_TYPE_CATEGORIES - Static variable in class loci.poi.hssf.record.LinkedDataRecord

LINK_TYPE_TITLE_OR_TEXT - Static variable in class loci.poi.hssf.record.LinkedDataRecord

LINK_TYPE_VALUES - Static variable in class loci.poi.hssf.record.LinkedDataRecord

linkAnnotation(Annotation) - Method in class ome.xml.model.Annotation

linkAnnotation(Annotation) - Method in class ome.xml.model.Channel

linkAnnotation(Annotation) - Method in class ome.xml.model.Dataset

linkAnnotation(Annotation) - Method in class ome.xml.model.Experimenter

linkAnnotation(Annotation) - Method in class ome.xml.model.ExperimenterGroup

linkAnnotation(Annotation) - Method in class ome.xml.model.Image

linkAnnotation(Annotation) - Method in class ome.xml.model.Pixels

linkAnnotation(Annotation) - Method in class ome.xml.model.Plane

linkAnnotation(Annotation) - Method in class ome.xml.model.Plate

linkAnnotation(Annotation) - Method in class ome.xml.model.PlateAcquisition

linkAnnotation(Annotation) - Method in class ome.xml.model.Project

linkAnnotation(Annotation) - Method in class ome.xml.model.Reagent

linkAnnotation(Annotation) - Method in class ome.xml.model.ROI

linkAnnotation(Annotation) - Method in class ome.xml.model.Screen

linkAnnotation(Annotation) - Method in class ome.xml.model.Well

linkAnnotation(Annotation) - Method in class ome.xml.model.WellSample

linkChannel(Channel) - Method in class ome.xml.model.Annotation

linkChannel(Channel) - Method in class ome.xml.model.FilterSet

linkDataset(Dataset) - Method in class ome.xml.model.Annotation

linkDataset(Dataset) - Method in class ome.xml.model.Experimenter

linkDataset(Dataset) - Method in class ome.xml.model.ExperimenterGroup

linkDataset(Dataset) - Method in class ome.xml.model.Image

linkDataset(Dataset) - Method in class ome.xml.model.Project

linkDichroic(Dichroic) - Method in class ome.xml.model.FilterSet

linkDichroic(Dichroic) - Method in class ome.xml.model.LightPath

LinkedDataFormulaField - Class in loci.poi.hssf.record

Not implemented yet.

LinkedDataFormulaField() - Constructor for class loci.poi.hssf.record.LinkedDataFormulaField

LinkedDataRecord - Class in loci.poi.hssf.record

Describes a linked data record.

LinkedDataRecord() - Constructor for class loci.poi.hssf.record.LinkedDataRecord

LinkedDataRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LinkedDataRecord

Constructs a LinkedData record and sets its fields appropriately.

linkEmissionFilter(Filter) - Method in class ome.xml.model.FilterSet

linkEmissionFilter(Filter) - Method in class ome.xml.model.LightPath

linkExcitationFilter(Filter) - Method in class ome.xml.model.FilterSet

linkExcitationFilter(Filter) - Method in class ome.xml.model.LightPath

linkExperiment(Experiment) - Method in class ome.xml.model.Experimenter

linkExperiment(Experiment) - Method in class ome.xml.model.Image

linkExperimenter(Experimenter) - Method in class ome.xml.model.Annotation

linkExperimenter(Experimenter) - Method in class ome.xml.model.Dataset

linkExperimenter(Experimenter) - Method in class ome.xml.model.Experiment

linkExperimenter(Experimenter) - Method in class ome.xml.model.ExperimenterGroup

linkExperimenter(Experimenter) - Method in class ome.xml.model.Image

linkExperimenter(Experimenter) - Method in class ome.xml.model.MicrobeamManipulation

linkExperimenter(Experimenter) - Method in class ome.xml.model.Project

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Annotation

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Dataset

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Experimenter

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Image

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Leader

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Project

linkFilterSet(FilterSet) - Method in class ome.xml.model.Channel

linkFilterSet(FilterSet) - Method in class ome.xml.model.Dichroic

linkFilterSetEmissionFilter(FilterSet) - Method in class ome.xml.model.Filter

linkFilterSetExcitationFilter(FilterSet) - Method in class ome.xml.model.Filter

linkImage(Image) - Method in class ome.xml.model.Annotation

linkImage(Image) - Method in class ome.xml.model.Dataset

linkImage(Image) - Method in class ome.xml.model.Experiment

linkImage(Image) - Method in class ome.xml.model.Experimenter

linkImage(Image) - Method in class ome.xml.model.ExperimenterGroup

linkImage(Image) - Method in class ome.xml.model.Instrument

linkImage(Image) - Method in class ome.xml.model.MicrobeamManipulation

linkImage(Image) - Method in class ome.xml.model.ROI

linkImage(Image) - Method in class ome.xml.model.WellSample

linkInstrument(Instrument) - Method in class ome.xml.model.Image

linkLaser(Laser) - Method in class ome.xml.model.Pump

linkLeader(Experimenter) - Method in class ome.xml.model.ExperimenterGroup

linkLightPath(LightPath) - Method in class ome.xml.model.Dichroic

linkLightPathEmissionFilter(LightPath) - Method in class ome.xml.model.Filter

linkLightPathExcitationFilter(LightPath) - Method in class ome.xml.model.Filter

linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experimenter

linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Image

linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.ROI

linkPixels(Pixels) - Method in class ome.xml.model.Annotation

linkPlane(Plane) - Method in class ome.xml.model.Annotation

linkPlate(Plate) - Method in class ome.xml.model.Annotation

linkPlate(Plate) - Method in class ome.xml.model.Screen

linkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Annotation

linkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.WellSample

linkProject(Project) - Method in class ome.xml.model.Annotation

linkProject(Project) - Method in class ome.xml.model.Dataset

linkProject(Project) - Method in class ome.xml.model.Experimenter

linkProject(Project) - Method in class ome.xml.model.ExperimenterGroup

linkPump(LightSource) - Method in class ome.xml.model.Laser

linkReagent(Reagent) - Method in class ome.xml.model.Annotation

linkReagent(Reagent) - Method in class ome.xml.model.Well

linkROI(ROI) - Method in class ome.xml.model.Annotation

linkROI(ROI) - Method in class ome.xml.model.Image

linkROI(ROI) - Method in class ome.xml.model.MicrobeamManipulation

linkScreen(Screen) - Method in class ome.xml.model.Annotation

linkScreen(Screen) - Method in class ome.xml.model.Plate

linkWell(Well) - Method in class ome.xml.model.Annotation

linkWell(Well) - Method in class ome.xml.model.Reagent

linkWellSample(WellSample) - Method in class ome.xml.model.Annotation

linkWellSample(WellSample) - Method in class ome.xml.model.Image

linkWellSample(WellSample) - Method in class ome.xml.model.PlateAcquisition

list - Variable in class loci.common.IniList

list(boolean) - Method in class loci.common.Location

Return a list of all of the files in this directory.

list() - Method in class loci.common.Location

Return a list of file names in this directory.

list(boolean) - Method in class ome.scifio.io.Location

Return a list of all of the files in this directory.

list() - Method in class ome.scifio.io.Location

Return a list of file names in this directory.

List2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of objects.

List2d() - Constructor for class loci.poi.util.List2d

ListAnnotation - Class in ome.xml.model

ListAnnotation() - Constructor for class ome.xml.model.ListAnnotation

Default constructor.

ListAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.ListAnnotation

Constructs ListAnnotation recursively from an XML DOM tree.

ListAnnotation(ListAnnotation) - Constructor for class ome.xml.model.ListAnnotation

Copy constructor.

listeners - Variable in class loci.formats.cache.Cache

List of cache event listeners.

listeners - Variable in class loci.formats.cache.CacheStrategy

List of cache event listeners.

listeners - Variable in class loci.plugins.in.ImagePlusReader

listeners() - Method in class loci.poi.hssf.eventmodel.EventRecordFactory

used for unit tests to test the registration of record listeners.

listFiles() - Method in class loci.common.Location

Return a list of absolute files in this directory.

listFiles() - Method in class ome.scifio.io.Location

Return a list of absolute files in this directory.

listing - Variable in class ome.scifio.io.Location.ListingsResult

listIterator() - Method in class loci.common.IniList

listIterator(int) - Method in class loci.common.IniList

ListManagedBlock - Interface in loci.poi.poifs.storage

An interface for blocks managed by a list that works with a BlockAllocationTable to keep block sequences straight

LITTLE - Static variable in class loci.formats.tiff.TiffConstants

LITTLE_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType

Identifier for little-endian byte ordering (i.e.

LITTLE_ENDIAN - Static variable in class loci.formats.tiff.IFD

littleEndian - Variable in class loci.formats.codec.CodecOptions

Indicates endianness of pixel data.

littleEndian - Variable in class loci.formats.CoreMetadata

Indicates whether or not each pixel's bytes are in little endian order.

littleEndian - Variable in class loci.formats.tools.AmiraParameters

LittleEndian - Class in loci.poi.util

a utility class for handling little-endian numbers, which the 80x86 world is replete with.

LittleEndian.BufferUnderrunException - Exception in loci.poi.util

Exception to handle buffer underruns

LittleEndianConsts - Interface in loci.poi.util

a repository for constants shared by classes within this package

ll - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child LL

LM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the light microscopy domain.

LoadData - Class in mdbtools.dbengine.tasks

Load any data from a table into data

LoadData(Table) - Constructor for class mdbtools.dbengine.tasks.LoadData

LOADER - Static variable in class loci.formats.gui.LegacyQTTools

This custom class loader searches additional paths for the QTJava.zip library.

loader - Variable in class loci.formats.gui.PreviewPane

Thumbnail loading thread.

loader - Variable in class ome.scifio.common.ReflectedUniverse

Class loader for imported classes.

loaderAlive - Variable in class loci.formats.gui.PreviewPane

Flag indicating whether loader thread should keep running.

loadId - Variable in class loci.formats.gui.PreviewPane

Current ID to load.

loadImage(Image) - Static method in class loci.formats.gui.AWTImageTools

Ensures the given AWT image is fully loaded.

loadLibrary() - Static method in class jj2000.j2k.util.NativeServices

Loads the shared library implementing the native methods of this class and returns true on success.

loadMemo() - Method in class loci.formats.Memoizer

loadOption() - Method in class loci.plugins.prefs.BooleanOption

loadOption() - Method in class loci.plugins.prefs.DoubleOption

loadOption() - Method in class loci.plugins.prefs.Option

Loads the option's value from the ImageJ preferences file.

loadOption() - Method in class loci.plugins.prefs.StringOption

loadOptions() - Method in class loci.plugins.prefs.OptionsList

Loads option values from the ImageJ preferences file.

loadReader() - Method in interface loci.formats.Memoizer.Deser

loadReader() - Method in class loci.formats.Memoizer.KryoDeser

loadReleaseVersion() - Method in interface loci.formats.Memoizer.Deser

loadReleaseVersion() - Method in class loci.formats.Memoizer.KryoDeser

loadRevision() - Method in interface loci.formats.Memoizer.Deser

loadRevision() - Method in class loci.formats.Memoizer.KryoDeser

loadStart(File) - Method in interface loci.formats.Memoizer.Deser

loadStart(File) - Method in class loci.formats.Memoizer.KryoDeser

loadStop() - Method in interface loci.formats.Memoizer.Deser

loadStop() - Method in class loci.formats.Memoizer.KryoDeser

loadThumb(BufferedImageReader, int, Panel, boolean) - Static method in class loci.plugins.in.ThumbLoader

loadVersion() - Method in interface loci.formats.Memoizer.Deser

loadVersion() - Method in class loci.formats.Memoizer.KryoDeser

loc - Variable in class loci.common.Location

localColorTable - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

Location - Class in loci.common

A legacy delegator class for ome.scifio.io.Location.

Location(String) - Constructor for class loci.common.Location

Location(File) - Constructor for class loci.common.Location

Location(String, String) - Constructor for class loci.common.Location

Location(Location, String) - Constructor for class loci.common.Location

Location() - Constructor for class loci.common.Location

Location - Class in ome.scifio.io

Pseudo-extension of java.io.File that supports reading over HTTP.

Location(String) - Constructor for class ome.scifio.io.Location

Location(File) - Constructor for class ome.scifio.io.Location

Location(String, String) - Constructor for class ome.scifio.io.Location

Location(Location, String) - Constructor for class ome.scifio.io.Location

Location.ListingsResult - Class in ome.scifio.io

LOCATION_HTTP - Static variable in class loci.plugins.in.ImporterOptions

LOCATION_LOCAL - Static variable in class loci.plugins.in.ImporterOptions

LOCATION_OMERO - Static variable in class loci.plugins.in.ImporterOptions

LocationDialog - Class in loci.plugins.in

Bio-Formats Importer location chooser dialog box.

LocationDialog(ImportProcess) - Constructor for class loci.plugins.in.LocationDialog

Creates a location chooser dialog for the Bio-Formats Importer.

loci.common - package loci.common

loci.common.adapter - package loci.common.adapter

loci.common.enumeration - package loci.common.enumeration

loci.common.services - package loci.common.services

loci.common.xml - package loci.common.xml

loci.formats - package loci.formats

Bio-Formats: a library for reading and writing popular microscopy file formats.

loci.formats.cache - package loci.formats.cache

Package containing Bio-Formats caching logic, for managing subsets of large collections of image planes in memory.

loci.formats.codec - package loci.formats.codec

Package containing Bio-Formats compression and decompression logic.

loci.formats.gui - package loci.formats.gui

Package containing Bio-Formats graphical user interface code.

loci.formats.in - package loci.formats.in

Package containing Bio-Formats file format readers.

loci.formats.itk - package loci.formats.itk

loci.formats.meta - package loci.formats.meta

Package containing core Bio-Formats metadata interfaces for the OME data model.

loci.formats.ome - package loci.formats.ome

Package containing Bio-Formats OME-related logic for OME-XML metadata, and database import, upload and download.

loci.formats.out - package loci.formats.out

Package containing Bio-Formats file format writers.

loci.formats.services - package loci.formats.services

loci.formats.tiff - package loci.formats.tiff

Package containing Bio-Formats TIFF code of general utility.

loci.formats.tools - package loci.formats.tools

Package containing utility methods corresponding to the Bio-Formats command line tools.

loci.legacy.adapter - package loci.legacy.adapter

loci.ome.io - package loci.ome.io

OME I/O: a library for OME database import, upload and download.

loci.ome.io.services - package loci.ome.io.services

loci.plugins - package loci.plugins

LOCI Plugins: a collection of plugins for ImageJ, including the Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, Data Browser and Stack Slicer.

loci.plugins.config - package loci.plugins.config

LOCI Plugins Configuration plugin for ImageJ.

loci.plugins.in - package loci.plugins.in

Bio-Formats Importer plugin for ImageJ.

loci.plugins.macro - package loci.plugins.macro

Bio-Formats Macro Extensions plugin for ImageJ.

loci.plugins.ome - package loci.plugins.ome

OME Plugins: a collection of plugins for ImageJ, including the Download from OME and Upload to OME plugins.

loci.plugins.out - package loci.plugins.out

Bio-Formats Exporter plugin for ImageJ.

loci.plugins.prefs - package loci.plugins.prefs

Classes for managing LOCI plugins preferences.

loci.plugins.shortcut - package loci.plugins.shortcut

LOCI Plugins Shortcut Window plugin for ImageJ.

loci.plugins.util - package loci.plugins.util

Utility classes and methods for the LOCI plugins for ImageJ.

loci.poi - package loci.poi

loci.poi.ddf - package loci.poi.ddf

This package contains classes for decoding the Microsoft Office Drawing format otherwise known as escher henceforth known in POI as the Dreadful Drawing Format.

loci.poi.dev - package loci.poi.dev

loci.poi.hpsf - package loci.poi.hpsf

loci.poi.hpsf.wellknown - package loci.poi.hpsf.wellknown

Specific support for DocumentSummaryInformation, SummaryInformation types.

loci.poi.hssf.dev - package loci.poi.hssf.dev

DEV package serves two purposes.

loci.poi.hssf.eventmodel - package loci.poi.hssf.eventmodel

loci.poi.hssf.eventusermodel - package loci.poi.hssf.eventusermodel

HSSF eventmodel Package provides an event-based API for reading HSSF files.

loci.poi.hssf.extractor - package loci.poi.hssf.extractor

loci.poi.hssf.model - package loci.poi.hssf.model

Provides low level API structures for reading, writing, modifying XLS files.

loci.poi.hssf.record - package loci.poi.hssf.record

Record package contains class representations for XLS binary strutures.

loci.poi.hssf.record.aggregates - package loci.poi.hssf.record.aggregates

record aggregates are not real "records" but collections of records that act as a single record.

loci.poi.hssf.record.formula - package loci.poi.hssf.record.formula

formula package contains binary PTG structures used in Formulas

loci.poi.hssf.usermodel - package loci.poi.hssf.usermodel

usermodel package maps HSSF low level strutures to familiar workbook/sheet model

loci.poi.hssf.util - package loci.poi.hssf.util

util package contains tools needed for writing HSSF files that are not necesarily "real" HSSF concepts.

loci.poi.poifs.common - package loci.poi.poifs.common

common package contains constants and other classes shared across all POIFS subpackages

loci.poi.poifs.dev - package loci.poi.poifs.dev

DEV package serves two purposes.

loci.poi.poifs.eventfilesystem - package loci.poi.poifs.eventfilesystem

The eventfilesystem is an efficient method for reading OLE 2 CDF files.

loci.poi.poifs.filesystem - package loci.poi.poifs.filesystem

filesystem package maps OLE 2 Compound document files to a more familiar filesystem interface.

loci.poi.poifs.property - package loci.poi.poifs.property

property package contains high and low level Property structures for POIFS.

loci.poi.poifs.storage - package loci.poi.poifs.storage

storage package contains low level binary structures for POIFS's implementation of the OLE 2 Compound Document Format.

loci.poi.util - package loci.poi.util

Top-level util package are classes that are useful throughout the project.

loci.tests - package loci.tests

Base package for automated and manual testing of the LOCI software packages.

loci.tests.testng - package loci.tests.testng

Package for automated testing of the LOCI software packages using TestNG.

loci.utils - package loci.utils

LociConfig - Class in loci.plugins.config

An ImageJ plugin for displaying the LOCI plugins configuration dialog.

LociConfig() - Constructor for class loci.plugins.config.LociConfig

LociExporter - Class in loci.plugins

ImageJ plugin for writing files using the OME Bio-Formats package.

LociExporter() - Constructor for class loci.plugins.LociExporter

LociFunctions - Class in loci.plugins.macro

This class provides macro extensions for ImageJ for Bio-Formats and other LOCI tools.

LociFunctions() - Constructor for class loci.plugins.macro.LociFunctions

LociImporter - Class in loci.plugins

ImageJ plugin for reading files using the OME Bio-Formats package.

LociImporter() - Constructor for class loci.plugins.LociImporter

LociInstaller - Class in loci.plugins.config

An ImageJ plugin for installing and upgrading libraries related to the LOCI plugins.

LociInstaller() - Constructor for class loci.plugins.config.LociInstaller

LociPrefs - Class in loci.plugins.util

Utility methods for ImageJ preferences for LOCI plugins.

LociUploader - Class in loci.plugins.ome

ImageJ plugin for uploading images to an OME server.

LociUploader() - Constructor for class loci.plugins.ome.LociUploader

LOG - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

log() - Method in class loci.plugins.util.RecordedImageProcessor

log(int, Object) - Method in class loci.poi.util.CommonsLogger

Log a message

log(int, Object) - Method in class loci.poi.util.NullLogger

Log a message

log(int, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message

log(int, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object) - Method in class loci.poi.util.POILogger

log(int, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message

log(int, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object) - Method in class loci.poi.util.SystemOutLogger

Log a message

log2(int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the floor of the log, base 2, of 'x'.

Log4jTools - Class in ome.scifio.common

A utility class with convenience methods for log4j.

LogbackTools - Class in ome.scifio.common

A utility class with convenience methods for logback.

logFormatted(int, String, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

logFormatted(int, String, Object, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

LOGGER - Static variable in class loci.formats.codec.BaseCodec

LOGGER - Static variable in class loci.formats.codec.JPEGTileDecoder

LOGGER - Static variable in class loci.formats.FormatHandler

LOGGER - Static variable in class loci.formats.FormatTools

LOGGER - Static variable in class loci.formats.in.BaseTiffReader

Logger for this class.

LOGGER - Static variable in class loci.formats.ome.AbstractOMEXMLMetadata

logger - Variable in class loci.poi.POIDocument

For our own logging use

logicalScreenHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

logicalScreenWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

login(OMECredentials) - Static method in class loci.ome.io.OMEUtils

Login to an OME/OMERO server.

logout(boolean) - Static method in class loci.ome.io.OMEUtils

Log out of OME/OMERO server.

logout() - Method in class loci.plugins.ome.OMEPlugin

Logout of OME database

LONG_DATE_FORMAT - Static variable in class loci.formats.in.MetamorphReader

LONG_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

LongAnnotation - Class in ome.xml.model

LongAnnotation() - Constructor for class ome.xml.model.LongAnnotation

Default constructor.

LongAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.LongAnnotation

Constructs LongAnnotation recursively from an XML DOM tree.

LongAnnotation(LongAnnotation) - Constructor for class ome.xml.model.LongAnnotation

Copy constructor.

LongField - Class in loci.poi.util

representation of a long (16-bit) field at a fixed location within a byte array

LongField(int) - Constructor for class loci.poi.util.LongField

construct the LongField with its offset into its containing byte array

LongField(int, long) - Constructor for class loci.poi.util.LongField

construct the LongField with its offset into its containing byte array and initialize its value

LongField(int, byte[]) - Constructor for class loci.poi.util.LongField

Construct the LongField with its offset into its containing byte array and initialize its value from its byte array

LongField(int, long, byte[]) - Constructor for class loci.poi.util.LongField

construct the LongField with its offset into its containing byte array, initialize its value, and write the value to a byte array

LONGITUDE_REF_EAST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLongitudeRef" and "GPSDestLongitudeRef" tags.

LONGITUDE_REF_WEST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLongitudeRef" and "GPSDestLongitudeRef" tags.

longsToBytes(long[], boolean) - Static method in class loci.common.DataTools

Translates an array of long values into an array of byte values.

longsToBytes(long[], boolean) - Static method in class ome.scifio.common.DataTools

Translates an array of long values into an array of byte values.

longToBytes(long, boolean) - Static method in class loci.common.DataTools

Translates the long value into an array of eight bytes.

longToBytes(long, boolean) - Static method in class ome.scifio.common.DataTools

Translates the long value into an array of eight bytes.

longValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a long.

lookup - Variable in class loci.formats.in.PictReader

Color lookup table for palette color images.

lookupIndex(String) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

lookupName(short) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

lossless - Variable in class loci.formats.codec.CodecOptions

Used with codecs allowing lossy and lossless compression.

LosslessJPEGCodec - Class in loci.formats.codec

Decompresses lossless JPEG images.

LosslessJPEGCodec() - Constructor for class loci.formats.codec.LosslessJPEGCodec

LOW_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy

Lower - Class in mdbtools.dbengine.functions

Lower() - Constructor for class mdbtools.dbengine.functions.Lower

lpoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

lqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

lqcd - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD

lrgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN

lrxs - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask

The lower right x coordinates of the applicable ROIs

lrys - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask

The lower right y coordinates of the applicable ROIs

lsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

lsot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT

LUMA_BLUE - Static variable in enum loci.formats.tiff.PhotoInterp

LUMA_GREEN - Static variable in enum loci.formats.tiff.PhotoInterp

LUMA_RED - Static variable in enum loci.formats.tiff.PhotoInterp

Default luminance values for YCbCr data.

LuraWave - Class in loci.plugins.util

Utility methods for dealing with proprietary LuraWave licensing.

LuraWaveCodec - Class in loci.formats.codec

This class provides LuraWave decompression, using LuraWave's Java decoding library.

LuraWaveCodec() - Constructor for class loci.formats.codec.LuraWaveCodec

LuraWaveService - Interface in loci.formats.services

Source code: Trac, Gitweb

LuraWaveServiceImpl - Class in loci.formats.services

Source code: Trac, Gitweb

LuraWaveServiceImpl() - Constructor for class loci.formats.services.LuraWaveServiceImpl

Default constructor.

LUT_LENGTH - Static variable in class loci.formats.in.BioRadReader

lutLength - Variable in class loci.formats.ChannelFiller

Number of LUT components.

lvls - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder

The number of levels in the tag tree

lvls - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The number of levels in the tag tree

lw - Variable in class jj2000.j2k.util.MsgPrinter

The line width to use

lwfDecoder - Class in com.luratech.lwf

Stub of the Luratech LuraWave® Java decoder class.

lwfDecoder(InputStream, String, String) - Constructor for class com.luratech.lwf.lwfDecoder

LY_RES_COMP_POS_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType

The bit stream is Layer/Resolution/Component/Position progressive : 0

lye - Variable in class jj2000.j2k.entropy.Progression

The index of the last layer.

lyepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

LZOCodec - Class in loci.formats.codec

This class implements LZO decompression.

LZOCodec() - Constructor for class loci.formats.codec.LZOCodec

LZWCodec - Class in loci.formats.codec

This is an optimized LZW codec for use with TIFF files.

LZWCodec() - Constructor for class loci.formats.codec.LZWCodec

LZWCompressor - Class in com.sun.media.imageioimpl.common

Modified from original LZWCompressor to change interface to passing a buffer of data to be compressed.

LZWCompressor(ImageOutputStream, int, boolean) - Constructor for class com.sun.media.imageioimpl.common.LZWCompressor

LZWStringTable - Class in com.sun.media.imageioimpl.common

General purpose LZW String Table.

LZWStringTable() - Constructor for class com.sun.media.imageioimpl.common.LZWStringTable

Constructor allocate memory for string store data

M

m - Variable in class jj2000.j2k.entropy.CodedCBlk

The vertical index of the code-block, within the subband.

m - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The vertical index of the code-block, within the subband

MAC_OS_X - Static variable in class loci.formats.gui.LegacyQTTools

MacroFunctions - Class in loci.plugins.macro

Convenience class that simplifies implemention of ImageJ macro extensions.

MacroFunctions() - Constructor for class loci.plugins.macro.MacroFunctions

macros - Class in mdbtools.libmdb

macros() - Constructor for class mdbtools.libmdb.macros

magbits - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The number of magnitude bits in the integer representation.

magbits - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The number of magnitude bits

MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants

main(String[]) - Static method in class loci.common.ReflectedUniverse

Allows exploration of a reflected universe in an interactive environment.

main(String[]) - Static method in class loci.formats.AxisGuesser

Method for testing pattern guessing logic.

main(String[]) - Static method in class loci.formats.codec.BitBuffer

Testing method.

main(String[]) - Static method in class loci.formats.codec.BitWriter

Tests the BitWriter class.

main(String[]) - Static method in class loci.formats.FilePattern

Method for testing file pattern logic.

main(String[]) - Static method in class loci.formats.gui.DataConverter

main(String[]) - Static method in class loci.formats.gui.ImageViewer

main(String[]) - Static method in class loci.formats.gui.XMLWindow

main(String[]) - Static method in class loci.formats.in.CellVoyagerReader

main(String[]) - Static method in class loci.formats.itk.ITKBridgePipes

main(String[]) - Static method in class loci.formats.ome.OmeisImporter

Deprecated.

Run ./omebf with a list of file IDs to import those IDs.

main(String[]) - Static method in class loci.formats.tools.AmiraParameters

main(String[]) - Static method in class loci.formats.tools.BioFormatsExtensionPrinter

main(String[]) - Static method in class loci.formats.tools.CacheConsole

Interactive interpreter for testing Bio-Formats caching implementation.

main(String[]) - Static method in class loci.formats.tools.EditTiffG

main(String[]) - Static method in class loci.formats.tools.MakeDatasetStructureTable

main(String[]) - Static method in class loci.formats.tools.MakeTestOmeTiff

main(String[]) - Static method in class loci.formats.tools.PrintDomains

main(String[]) - Static method in class loci.formats.tools.PrintFormatTable

main(String[]) - Static method in class loci.formats.tools.TiffComment

main(String[]) - Static method in class loci.formats.tools.UpgradeCheck

main(String[]) - Static method in class loci.formats.tools.XMLIndent

main(String[]) - Static method in class loci.formats.tools.XMLValidate

main(String[]) - Static method in class loci.ome.io.OmeroReader

A simple command line tool for downloading images from OMERO.

main(String[]) - Static method in class loci.ome.io.OMEWriter

main(String[]) - Static method in class loci.plugins.About

main(String[]) - Static method in class loci.plugins.config.LociConfig

main(String[]) - Static method in class loci.plugins.in.Importer

Main method, for testing.

main(String[]) - Static method in class loci.plugins.ome.About

main(String[]) - Static method in class loci.poi.ddf.EscherDump

A simple test stub.

main(String[]) - Static method in class loci.poi.dev.RecordGenerator

The main program for the RecordGenerator class

main(String[]) - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

For the most basic testing.

main(String[]) - Static method in class loci.poi.hssf.dev.BiffViewer

Method main with 1 argument just run straight biffview against given file

main(String[]) - Static method in class loci.poi.hssf.dev.EFBiffViewer

main(String[]) - Static method in class loci.poi.hssf.dev.FormulaViewer

Method main pass me a filename and I'll try and parse the formulas from it

main(String[]) - Static method in class loci.poi.hssf.dev.HSSF

Method main Given 1 argument takes that as the filename, inputs it and dumps the cell values/types out to sys.out given 2 arguments where the second argument is the word "write" and the first is the filename - writes out a sample (test) spreadsheet (see public HSSF(String filename, boolean write)).

main - Variable in class loci.poi.hssf.record.PageBreakRecord.Break

main(String[]) - Static method in class loci.poi.hssf.record.RKRecord

Debugging main()

main(String[]) - Static method in class loci.poi.poifs.dev.POIFSViewer

Display the contents of multiple POIFS files

main(String[]) - Static method in class loci.poi.poifs.eventfilesystem.POIFSReader

read in files

main(String[]) - Static method in class loci.poi.poifs.filesystem.POIFSFileSystem

read in a file and write it back out again

main(String[]) - Static method in class loci.poi.util.DrawingDump

main(String[]) - Static method in class loci.poi.util.HexDump

main(String[]) - Static method in class loci.tests.ImageTester

main(String[]) - Static method in class loci.tests.IOTester

main(String[]) - Static method in class loci.tests.OmeroReaderTest

main(String[]) - Static method in class loci.tests.SingularityTest

main(String[]) - Static method in class loci.tests.ZipTester

main(String[]) - Static method in class mdbtools.dbengine.Tests

main(String[]) - Static method in class mdbtools.examples.mdb_tables

main(String[]) - Static method in class mdbtools.libmdb06util.mdbver

main(String[]) - Static method in class mdbtools.mdb_export

main(String[]) - Static method in class mdbtools.mdb_schema

main(String[]) - Static method in class mdbtools.mdb_tables

main(String[]) - Static method in class mdbtools.tests.ColumnTest

main(String[]) - Static method in class ome.scifio.common.ReflectedUniverse

Allows exploration of a reflected universe in an interactive environment.

main_tagset - Variable in class loci.formats.in.ZeissTIFFHandler

MainDialog - Class in loci.plugins.in

Bio-Formats Importer general options dialog box.

MainDialog(ImportProcess) - Constructor for class loci.plugins.in.MainDialog

Creates a general options dialog for the Bio-Formats Importer.

mainHeadOff - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The offset of the main header in the input stream

MAKE - Static variable in class loci.formats.tiff.IFD

make24Bits(Object, int, int, boolean, boolean) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to a 3 x (width * height) byte array.

make24Bits(Object, int, int, boolean, boolean, Double, Double) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to a 3 x (width * height) byte array.

make24Bits(Object, int, int, boolean) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to an int array, i.e.

make24Bits(Object, int, int, boolean, Double, Double) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to an int array, i.e.

makeBuffered(Image) - Static method in class loci.formats.gui.AWTImageTools

Creates a buffered image from the given AWT image object.

makeBuffered(Image, ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Creates a buffered image possessing the given color model, from the specified AWT image object.

makeBufferedImageReader(IFormatReader) - Static method in class loci.formats.gui.BufferedImageReader

Converts the given reader into a BufferedImageReader, wrapping if needed.

makeBufferedImageWriter(IFormatWriter) - Static method in class loci.formats.gui.BufferedImageWriter

Converts the given writer into a BufferedImageWriter, wrapping if needed.

makeChannelFiller(IFormatReader) - Static method in class loci.formats.ChannelFiller

Converts the given reader into a ChannelFiller, wrapping if needed.

makeChannelMerger(IFormatReader) - Static method in class loci.formats.ChannelMerger

Converts the given reader into a ChannelMerger, wrapping if needed.

makeChannelSeparator(IFormatReader) - Static method in class loci.formats.ChannelSeparator

Converts the given reader into a ChannelSeparator, wrapping if needed.

makeColorModel(int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets a color model for the given number of color components.

makeColorSpace(int) - Static method in class loci.formats.gui.AWTImageTools

Gets a color space for the given number of color components.

makeCompactGrid(Container, int, int, int, int, int, int) - Static method in class loci.plugins.config.SpringUtilities

Aligns the first rows * cols components of parent in a grid.

makeCompatible(BufferedImage, GraphicsConfiguration) - Static method in class loci.formats.gui.AWTImageTools

Creates a buffered image compatible with the given graphics configuration, using the given buffered image as a source.

makeDataArray(byte[], int, boolean, boolean) - Static method in class loci.common.DataTools

Convert a byte array to the appropriate 1D primitive type array.

makeDataArray(byte[], int, boolean, boolean, boolean) - Static method in class loci.common.DataTools

Deprecated.

Use DataTools.makeDataArray(byte[], int, boolean, boolean) regardless of signedness.

makeDataArray(byte[], int, boolean, boolean) - Static method in class ome.scifio.common.DataTools

Convert a byte array to the appropriate 1D primitive type array.

makeDataArray(byte[], int, boolean, boolean, boolean) - Static method in class ome.scifio.common.DataTools

Deprecated.

Use DataTools.makeDataArray(byte[], int, boolean, boolean) regardless of signedness.

makeDataArray2D(byte[], int, boolean, boolean, int) - Static method in class loci.common.DataTools

Convert a byte array to the appropriate 2D primitive type array.

makeDataArray2D(byte[], int, boolean, boolean, int) - Static method in class ome.scifio.common.DataTools

Convert a byte array to the appropriate 2D primitive type array.

MakeDatasetStructureTable - Class in loci.formats.tools

Utility class for generating a table containing the dataset structure for every supported format.

MakeDatasetStructureTable() - Constructor for class loci.formats.tools.MakeDatasetStructureTable

makeDimensionSwapper(IFormatReader) - Static method in class loci.formats.DimensionSwapper

Converts the given reader into a DimensionSwapper, wrapping if needed.

makeDummySlider() - Static method in class loci.plugins.util.DataBrowser

makeFilterMetadata() - Method in class loci.formats.FormatReader

Return a properly configured loci.formats.meta.FilterMetadata.

makeGrid(Container, int, int, int, int, int, int) - Static method in class loci.plugins.config.SpringUtilities

Aligns the first rows * cols components of parent in a grid.

makeHeavyPanel(Component) - Static method in class loci.plugins.util.DataBrowser

Makes AWT play nicely with Swing components.

makeImage(byte[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel byte data.

makeImage(short[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel short data.

makeImage(int[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel int data.

makeImage(float[], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel float data.

makeImage(double[], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel double data.

makeImage(byte[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given byte data.

makeImage(short[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given short data.

makeImage(int[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given int data.

makeImage(float[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given float data.

makeImage(double[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given double data.

makeImage(byte[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given byte data.

makeImage(short[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given short data.

makeImage(int[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given int data.

makeImage(float[][], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-precision floating point data.

makeImage(double[][], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given double-precision floating point data.

makeImage(byte[], boolean, MetadataRetrieve, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given raw byte array, obtaining the dimensional parameters from the specified metadata object.

makeImage(byte[], int, int, int, boolean, int, boolean, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given raw byte array, performing any necessary type conversions.

makeImage(byte[][], int, int, int, boolean, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given raw byte array, performing any necessary type conversions.

makeImageProcessorReader(IFormatReader) - Static method in class loci.plugins.util.ImageProcessorReader

Converts the given reader into a ImageProcessorReader, wrapping if needed.

makeImageReader() - Static method in class loci.plugins.util.LociPrefs

Creates an image reader according to the current configuration settings, including which format readers are currently enabled, as well as format-specific configuration settings.

makeJTree(Document) - Static method in class loci.formats.gui.XMLCellRenderer

Constructs a Swing JTree that displays the given XML DOM document.

makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This function generates the ROI mask for one tile-component.

makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

This function generates the ROI mask for the entire tile.

makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This function generates the ROI mask for the entire tile.

makeMinMaxCalculator(IFormatReader) - Static method in class loci.formats.MinMaxCalculator

Converts the given reader into a MinMaxCalculator, wrapping if needed.

makeModuloElement(Document) - Method in class loci.formats.meta.ModuloAnnotation

makeOmeTiff(String...) - Method in class loci.formats.tools.MakeTestOmeTiff

makeOmeTiff(String, CoreMetadata) - Method in class loci.formats.tools.MakeTestOmeTiff

makeOriginalMetadata(Document) - Method in class loci.formats.meta.OriginalMetadataAnnotation

MAKER_NOTE - Static variable in class loci.formats.tiff.IFD

makeRGBImage(byte[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

makeRGBImage(byte[][], int, int) - Static method in class loci.formats.gui.AWTImageTools

makerNoteOffset - Variable in class loci.formats.in.NikonReader

Offset to the Nikon Maker Note.

makeSamples() - Method in class loci.formats.tools.MakeTestOmeTiff

makeSaneDimensionOrder(String) - Static method in class loci.formats.MetadataTools

Adjusts the given dimension order as needed so that it contains exactly one of each of the following characters: 'X', 'Y', 'Z', 'C', 'T'.

makeSigned(byte[]) - Static method in class loci.common.DataTools

makeSigned(short[]) - Static method in class loci.common.DataTools

makeSigned(int[]) - Static method in class loci.common.DataTools

makeSigned(byte[]) - Static method in class ome.scifio.common.DataTools

makeSigned(short[]) - Static method in class ome.scifio.common.DataTools

makeSigned(int[]) - Static method in class ome.scifio.common.DataTools

MakeTestOmeTiff - Class in loci.formats.tools

Creates sample OME-TIFF datasets according to the given parameters.

MakeTestOmeTiff() - Constructor for class loci.formats.tools.MakeTestOmeTiff

makeTextField() - Static method in class loci.plugins.config.ConfigWindow

makeTileStitcher(IFormatReader) - Static method in class loci.formats.TileStitcher

Converts the given reader into a TileStitcher, wrapping if needed.

makeUnsigned(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Converts the given BufferedImage into an image with unsigned pixel data.

makeupCodes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Black and white make-up code table.

makeupCodesBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Make-up codes for black runs.

makeupCodesWhite - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Make-up codes for white runs.

MANUAL - Static variable in class loci.poi.hssf.record.CalcModeRecord

manually calculate formulas (0)

MANUFACTURER - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

ManufacturerSpec - Class in ome.xml.model

ManufacturerSpec() - Constructor for class ome.xml.model.ManufacturerSpec

Default constructor.

ManufacturerSpec(Element, OMEModel) - Constructor for class ome.xml.model.ManufacturerSpec

Constructs ManufacturerSpec recursively from an XML DOM tree.

ManufacturerSpec(ManufacturerSpec) - Constructor for class ome.xml.model.ManufacturerSpec

Copy constructor.

map - Variable in class loci.formats.tools.AmiraParameters

map_base_pg - Variable in class mdbtools.libmdb.MdbTableDef

map_sz - Variable in class mdbtools.libmdb.MdbFile

map_sz - Variable in class mdbtools.libmdb.MdbTableDef

mapFile(String, IRandomAccess) - Static method in class loci.common.Location

Maps the given id to the given IRandomAccess object.

mapFile(String) - Static method in class loci.tests.testng.TestTools

Map the given file into memory.

mapFile(String, IRandomAccess) - Static method in class ome.scifio.io.Location

Maps the given id to the given IRandomAccess object.

mapId(String, String) - Static method in class loci.common.Location

Maps the given id to an actual filename on disk.

mapId(String, String) - Static method in class ome.scifio.io.Location

Maps the given id to an actual filename on disk.

mapMode - Variable in class ome.scifio.io.NIOFileHandle

The default map mode for the file.

mapServer(String, String) - Static method in class loci.formats.in.FlexReader

Map the server named 'alias' to the path 'realName'.

mapServer(String, String[]) - Static method in class loci.formats.in.FlexReader

Map the server named 'alias' to the paths in 'realNames'.

mapServersFromConfigurationFile(String) - Static method in class loci.formats.in.FlexReader

Read a configuration file with lines of the form: <server alias>=<real server name> and call mapServer(String, String) accordingly.

Margin - Interface in loci.poi.hssf.record

The margin interface is a parent used to define left, right, top and bottom margins.

margins - Variable in class loci.poi.hssf.model.Sheet

mark() - Method in class com.sun.media.imageio.stream.RawImageInputStream

mark(int) - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

mark(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

mark(int) - Method in class loci.common.NIOInputStream

mark(int) - Method in class loci.common.RandomAccessInputStream

mark(int) - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Marks the current position in this input stream.

mark(int) - Method in class loci.poi.util.BlockingInputStream

mark(int) - Method in class ome.scifio.io.NIOInputStream

mark(int) - Method in class ome.scifio.io.RandomAccessInputStream

mark - Variable in class ome.scifio.io.StreamHandle

Marked position within the stream.

markedPos - Variable in class ome.scifio.io.RandomAccessInputStream

Marker - Enum in ome.xml.model.enums

MarkerEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Marker.

MarkerEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MarkerEnumHandler

Markers - Interface in jj2000.j2k.codestream

This interface defines the values of the different markers in the JPEG 2000 codestream.

markSupported() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

markSupported() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

markSupported() - Method in class loci.common.NIOInputStream

markSupported() - Method in class loci.common.RandomAccessInputStream

markSupported() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Tests if this input stream supports the mark and reset methods.

markSupported() - Method in class loci.poi.util.BlockingInputStream

markSupported() - Method in class ome.scifio.io.NIOInputStream

markSupported() - Method in class ome.scifio.io.RandomAccessInputStream

MarkUnsupportedException - Exception in loci.poi.hpsf

This exception is thrown if an InputStream does not support the InputStream.mark(int) operation.

MarkUnsupportedException() - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

MarkUnsupportedException(String) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

MarkUnsupportedException(Throwable) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

MarkUnsupportedException(String, Throwable) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

Mask - Class in ome.xml.model

Mask() - Constructor for class ome.xml.model.Mask

Default constructor.

Mask(Element, OMEModel) - Constructor for class ome.xml.model.Mask

Constructs Mask recursively from an XML DOM tree.

Mask(Mask) - Constructor for class ome.xml.model.Mask

Copy constructor.

maskPGM - Variable in class jj2000.j2k.roi.encoder.ROI

ImgReaderPGM object with the arbrtrary ROI

masterClock - Variable in class loci.formats.in.SDTInfo

Use or not Master Clock (SPC140 multi-module).

MathUtil - Class in jj2000.j2k.util

This class contains a collection of utility methods fro mathematical operations.

MathUtil() - Constructor for class jj2000.j2k.util.MathUtil

max(double) - Method in class loci.plugins.util.RecordedImageProcessor

Max - Class in mdbtools.dbengine.functions

Max() - Constructor for class mdbtools.dbengine.functions.Max

MAX_APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD

MAX_BUCKETS - Static variable in class loci.poi.hssf.record.ExtSSTRecord

MAX_CB_AREA - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The maximum code-block area (width x height).

MAX_CB_DIM - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The maximum code-block dimension.

MAX_COMP_BITDEPTH - Static variable in interface jj2000.j2k.codestream.Markers

The maximum number of component bitdepth

MAX_COMPONENTS - Static variable in class loci.plugins.in.SeriesDialog

MAX_DATATYPE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

The numerically largest constant representing a TIFF data type.

MAX_EL_COPYING - Static variable in class jj2000.j2k.util.ArrayUtil

The maximum array size to do element by element copying, larger arrays are copyied in a n optimized way.

MAX_HEADER_SIZE - Static variable in class loci.formats.in.QuesantReader

MAX_INT - Static variable in class jj2000.j2k.IntegerSpec

The largest value of type int

MAX_LPPM - Static variable in interface jj2000.j2k.codestream.Markers

Maximum length of PPM marker segment

MAX_LPPT - Static variable in interface jj2000.j2k.codestream.Markers

Maximum length of PPT marker segment

MAX_OVERHEAD - Static variable in class ome.scifio.io.RandomAccessInputStream

Maximum size of the buffer used by the DataInputStream.

MAX_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy

MAX_RECORD_DATA_SIZE - Static variable in class loci.poi.hssf.record.RecordInputStream

Maximum size of a single record (minus the 4 byte header) without a continue

MAX_ROW_NUMBER - Static variable in class loci.poi.hssf.record.RowRecord

The maximum row number that excel can handle (zero bazed) ie 65536 rows is max number of rows.

MAX_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD

MAX_SEARCH_SIZE - Static variable in class ome.scifio.io.NIOInputStream

Maximum number of bytes to search when searching through the stream.

MAX_SEARCH_SIZE - Static variable in class ome.scifio.io.RandomAccessInputStream

Maximum number of bytes to search when searching through the stream.

MAX_SERIES_THUMBS - Static variable in class loci.plugins.in.SeriesDialog

MAX_SERIES_TOGGLES - Static variable in class loci.plugins.in.SeriesDialog

MAX_TRIES - Static variable in class loci.plugins.util.LuraWave

maxAdcRate - Variable in class loci.formats.in.SDTInfo

maxByte - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

The maximum number of bytes that can be read from the buffer

maxBytes - Variable in class jj2000.j2k.codestream.writer.CodestreamWriter

The maximum number of bytes that can be written to the bit stream

maxBytes - Variable in class loci.formats.codec.CodecOptions

If compressing, this is the maximum number of raw bytes to compress.

maxCfdRate - Variable in class loci.formats.in.SDTInfo

(-1.0 - not set).

maxImgRes - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The maximum available image resolution level

maximum - Variable in class ome.scifio.common.StatusEvent

Current progress maximum.

MAXLEVEL - Static variable in class com.sun.media.imageioimpl.common.PaletteBuilder

maximum of tree depth

maxNodes - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

MaxShiftSpec - Class in jj2000.j2k.roi

This class contains the maxshift scaling value for each tile-component.

MaxShiftSpec(int, int, byte, String) - Constructor for class jj2000.j2k.roi.MaxShiftSpec

Constructs a 'ModuleSpec' object, initializing all the components and tiles to the 'SPEC_DEF' spec type, for the specified number of components and tiles.

maxSyncRate - Variable in class loci.formats.in.SDTInfo

Maximum rates during the measurement.

maxTacRate - Variable in class loci.formats.in.SDTInfo

maxValue() - Method in class loci.plugins.util.RecordedImageProcessor

mcsPoints - Variable in class loci.formats.in.SDTInfo

No of MCS values.

mcsTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for MCS histogram.

md5(byte[], int, int, int, int, int, int, int) - Static method in class loci.tests.testng.TestTools

Calculate the MD5 of a byte array.

md5(byte[], int, int) - Static method in class loci.tests.testng.TestTools

Calculate the MD5 of a byte array.

md5(byte[]) - Static method in class loci.tests.testng.TestTools

Calculate the MD5 of a byte array.

mdb - Variable in class mdbtools.libmdb.MdbCatalogEntry

mdb_access_types - Static variable in class mdbtools.libmdb.backend

mdb_add_sarg(MdbColumn, MdbSarg) - Static method in class mdbtools.libmdb.Sargs

mdb_alloc_catalog(MdbHandle) - Static method in class mdbtools.libmdb.mem

mdb_alloc_file() - Static method in class mdbtools.libmdb.mem

mdb_alloc_handle() - Static method in class mdbtools.libmdb.mem

mdb_alloc_tabledef(MdbCatalogEntry) - Static method in class mdbtools.libmdb.mem

MDB_ANY - Static variable in class mdbtools.libmdb.Constants

mdb_backends - Static variable in class mdbtools.libmdb.backend

mdb_bind_column(MdbTableDef, int, Holder) - Static method in class mdbtools.libmdb.Data

MDB_BIND_SIZE - Static variable in class mdbtools.libmdb.Constants

MDB_BOOL - Static variable in class mdbtools.libmdb.Constants

MDB_BYTE - Static variable in class mdbtools.libmdb.Constants

MDB_CATALOG_PG - Static variable in class mdbtools.libmdb.Constants

mdb_col_to_string(MdbHandle, int, int, int) - Static method in class mdbtools.libmdb.Data

MDB_DATABASE_PROPERTY - Static variable in class mdbtools.libmdb.Constants

MDB_DOUBLE - Static variable in class mdbtools.libmdb.Constants

MDB_EQUAL - Static variable in class mdbtools.libmdb.Constants

mdb_export - Class in mdbtools

mdb_export() - Constructor for class mdbtools.mdb_export

mdb_fetch_row(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_find_end_of_row(MdbHandle, int) - Static method in class mdbtools.libmdb.Data

MDB_FLOAT - Static variable in class mdbtools.libmdb.Constants

MDB_FORM - Static variable in class mdbtools.libmdb.Constants

mdb_free_catalog(MdbHandle) - Static method in class mdbtools.libmdb.mem

mdb_free_handle(MdbHandle) - Static method in class mdbtools.libmdb.mem

mdb_get_byte(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_coltype_string(MdbBackend, int) - Static method in class mdbtools.libmdb.backend

mdb_get_double(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_int16(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_int24(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_int32(MdbHandle, int) - Static method in class mdbtools.libmdb.file

mdb_get_single(MdbHandle, int) - Static method in class mdbtools.libmdb.file

MDB_GT - Static variable in class mdbtools.libmdb.Constants

MDB_GTEQ - Static variable in class mdbtools.libmdb.Constants

mdb_init() - Static method in class mdbtools.libmdb.mem

mdb_init_backends() - Static method in class mdbtools.libmdb.backend

MDB_INT - Static variable in class mdbtools.libmdb.Constants

MDB_ISNULL - Static variable in class mdbtools.libmdb.Constants

MDB_LIKE - Static variable in class mdbtools.libmdb.Constants

MDB_LINKED_TABLE - Static variable in class mdbtools.libmdb.Constants

MDB_LONGINT - Static variable in class mdbtools.libmdb.Constants

MDB_LT - Static variable in class mdbtools.libmdb.Constants

MDB_LTEQ - Static variable in class mdbtools.libmdb.Constants

MDB_MACRO - Static variable in class mdbtools.libmdb.Constants

MDB_MAX_COLS - Static variable in class mdbtools.libmdb.Constants

MDB_MAX_IDX_COLS - Static variable in class mdbtools.libmdb.Constants

MDB_MAX_OBJ_NAME - Static variable in class mdbtools.libmdb.Constants

MDB_MEMO - Static variable in class mdbtools.libmdb.Constants

MDB_MEMO_OVERHEAD - Static variable in class mdbtools.libmdb.Constants

mdb_memo_to_string(MdbHandle, int, int) - Static method in class mdbtools.libmdb.Data

MDB_MODULE - Static variable in class mdbtools.libmdb.Constants

MDB_MONEY - Static variable in class mdbtools.libmdb.Constants

mdb_money_to_string(MdbHandle, int) - Static method in class mdbtools.libmdb.Money

MDB_NOTNULL - Static variable in class mdbtools.libmdb.Constants

MDB_NUMERIC - Static variable in class mdbtools.libmdb.Constants

MDB_OLE - Static variable in class mdbtools.libmdb.Constants

mdb_open(RandomAccess) - Static method in class mdbtools.libmdb.file

mdb_oracle_types - Static variable in class mdbtools.libmdb.backend

MDB_PGSIZE - Static variable in class mdbtools.libmdb.Constants

MDB_PGSIZE - Static variable in class mdbtools.libmdb.MdbHandle

mdb_postgres_types - Static variable in class mdbtools.libmdb.backend

MDB_QUERY - Static variable in class mdbtools.libmdb.Constants

mdb_read_alt_pg(MdbHandle, long) - Static method in class mdbtools.libmdb.file

mdb_read_catalog(MdbHandle, int) - Static method in class mdbtools.libmdb.Catalog

mdb_read_columns(MdbTableDef) - Static method in class mdbtools.libmdb.Table

mdb_read_next_dpg(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_read_next_dpg_by_map0(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_read_next_dpg_by_map1(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_read_pg(MdbHandle, long) - Static method in class mdbtools.libmdb.file

mdb_read a wrapper for read that bails if anything is wrong

mdb_read_row(MdbTableDef, int) - Static method in class mdbtools.libmdb.Data

mdb_read_table(MdbCatalogEntry) - Static method in class mdbtools.libmdb.Table

MDB_RELATIONSHIP - Static variable in class mdbtools.libmdb.Constants

MDB_REPID - Static variable in class mdbtools.libmdb.Constants

MDB_REPORT - Static variable in class mdbtools.libmdb.Constants

mdb_rewind_table(MdbTableDef) - Static method in class mdbtools.libmdb.Data

mdb_schema - Class in mdbtools

mdb_schema() - Constructor for class mdbtools.mdb_schema

MDB_SDATETIME - Static variable in class mdbtools.libmdb.Constants

mdb_set_default_backend(MdbHandle, String) - Static method in class mdbtools.libmdb.backend

MDB_SUFFIX - Static variable in class loci.formats.in.ZeissLSMReader

mdb_swap_pgbuf(MdbHandle) - Static method in class mdbtools.libmdb.file

mdb_sybase_types - Static variable in class mdbtools.libmdb.backend

MDB_SYSTEM_TABLE - Static variable in class mdbtools.libmdb.Constants

MDB_TABLE - Static variable in class mdbtools.libmdb.Constants

mdb_tables - Class in mdbtools.examples

mdb_tables() - Constructor for class mdbtools.examples.mdb_tables

mdb_tables - Class in mdbtools

mdb_tables() - Constructor for class mdbtools.mdb_tables

mdb_test_int(MdbSarg, int) - Static method in class mdbtools.libmdb.Sargs

mdb_test_sarg(MdbHandle, MdbColumn, MdbSarg, int, int) - Static method in class mdbtools.libmdb.Sargs

mdb_test_sargs(MdbHandle, MdbColumn, int, int) - Static method in class mdbtools.libmdb.Sargs

MDB_TEXT - Static variable in class mdbtools.libmdb.Constants

MDB_UNKNOWN_09 - Static variable in class mdbtools.libmdb.Constants

MDB_UNKNOWN_0A - Static variable in class mdbtools.libmdb.Constants

mdb_xfer_bound_bool(MdbHandle, MdbColumn, boolean) - Static method in class mdbtools.libmdb.Data

mdb_xfer_bound_data(MdbHandle, int, MdbColumn, int) - Static method in class mdbtools.libmdb.Data

mdb_xfer_bound_ole(MdbHandle, int, MdbColumn, int) - Static method in class mdbtools.libmdb.Data

MdbAny - Class in mdbtools.libmdb

MdbAny() - Constructor for class mdbtools.libmdb.MdbAny

MdbBackend - Class in mdbtools.libmdb

MdbBackend() - Constructor for class mdbtools.libmdb.MdbBackend

MdbCatalogEntry - Class in mdbtools.libmdb

MdbCatalogEntry() - Constructor for class mdbtools.libmdb.MdbCatalogEntry

MdbColumn - Class in mdbtools.libmdb

MdbColumn() - Constructor for class mdbtools.libmdb.MdbColumn

MdbFile - Class in mdbtools.libmdb

MdbFile() - Constructor for class mdbtools.libmdb.MdbFile

MdbFormatConstants - Class in mdbtools.libmdb

MdbFormatConstants() - Constructor for class mdbtools.libmdb.MdbFormatConstants

MdbHandle - Class in mdbtools.libmdb

MdbHandle() - Constructor for class mdbtools.libmdb.MdbHandle

MdbJet3Constants - Static variable in class mdbtools.libmdb.MdbFormatConstants

MdbJet4Constants - Static variable in class mdbtools.libmdb.MdbFormatConstants

MdbSarg - Class in mdbtools.libmdb

MdbSarg() - Constructor for class mdbtools.libmdb.MdbSarg

MDBService - Interface in loci.formats.services

Interface defining methods for parsing MDB database files.

MDBServiceImpl - Class in loci.formats.services

Implementation of MDBService for parsing MDB database files.

MDBServiceImpl() - Constructor for class loci.formats.services.MDBServiceImpl

Default constructor.

MdbStatistics - Class in mdbtools.libmdb

MdbStatistics() - Constructor for class mdbtools.libmdb.MdbStatistics

MdbTableDef - Class in mdbtools.libmdb

MdbTableDef() - Constructor for class mdbtools.libmdb.MdbTableDef

mdbtools - package mdbtools

mdbtools.dbengine - package mdbtools.dbengine

mdbtools.dbengine.functions - package mdbtools.dbengine.functions

mdbtools.dbengine.sql - package mdbtools.dbengine.sql

mdbtools.dbengine.tasks - package mdbtools.dbengine.tasks

mdbtools.examples - package mdbtools.examples

mdbtools.jdbc2 - package mdbtools.jdbc2

mdbtools.libmdb - package mdbtools.libmdb

mdbtools.libmdb06util - package mdbtools.libmdb06util

mdbtools.publicapi - package mdbtools.publicapi

mdbtools.tests - package mdbtools.tests

mdbver - Class in mdbtools.libmdb06util

mdbver() - Constructor for class mdbtools.libmdb06util.mdbver

mdl - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The maximum number of decompostion levels for each component of the current tile.

MEA_SUFFIX - Static variable in class loci.formats.in.FlexReader

measDescBlockLength - Variable in class loci.formats.in.SDTInfo

measDescBlockNo - Variable in class loci.formats.in.SDTInfo

Number of the measurement description block corresponding to this data block.

measDescBlockOffs - Variable in class loci.formats.in.SDTInfo

measMode - Variable in class loci.formats.in.SDTInfo

MEASURE_MODE_2D - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSMeasureMode" tag.

MEASURE_MODE_3D - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSMeasureMode" tag.

MEASUREMENT_SUFFIXES - Static variable in class loci.formats.in.FlexReader

medianFilter() - Method in class loci.plugins.util.RecordedImageProcessor

MEDICAL_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the medical imaging domain.

MEDIUM - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

Medium - Enum in ome.xml.model.enums

MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

MEDIUM_DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

MEDIUM_DATE_FORMAT - Static variable in class loci.formats.in.MetamorphReader

MediumEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Medium.

MediumEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MediumEnumHandler

mem - Class in mdbtools.libmdb

mem() - Constructor for class mdbtools.libmdb.mem

MemAreaPtg - Class in loci.poi.hssf.record.formula

MemAreaPtg() - Constructor for class loci.poi.hssf.record.formula.MemAreaPtg

Creates new MemAreaPtg

MemAreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemAreaPtg

memBank - Variable in class loci.formats.in.SDTInfo

MemErrPtg - Class in loci.poi.hssf.record.formula

MemErrPtg() - Constructor for class loci.poi.hssf.record.formula.MemErrPtg

Creates new MemErrPtg

MemErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemErrPtg

MemFuncPtg - Class in loci.poi.hssf.record.formula

MemFuncPtg() - Constructor for class loci.poi.hssf.record.formula.MemFuncPtg

MemFuncPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemFuncPtg

Creates new function pointer from a byte array usually called while reading an excel file.

Memoizer - Class in loci.formats

ReaderWrapper implementation which caches the state of the delegate (including and other ReaderWrapper instances) after setId has been called.

Memoizer() - Constructor for class loci.formats.Memoizer

Constructs a memoizer around a new image reader.

Memoizer(long) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around a new image reader.

Memoizer(long, File) - Constructor for class loci.formats.Memoizer

Memoizer(IFormatReader) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around the given reader.

Memoizer(IFormatReader, long) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around the given reader.

Memoizer(IFormatReader, long, File) - Constructor for class loci.formats.Memoizer

Memoizer.Deser - Interface in loci.formats

Memoizer.KryoDeser - Class in loci.formats

Memoizer.KryoDeser() - Constructor for class loci.formats.Memoizer.KryoDeser

MemoryData - Class in mdbtools.dbengine

An implementation of Data that stores the complete result in memory

MemoryData() - Constructor for class mdbtools.dbengine.MemoryData

MemoryData(Data, int) - Constructor for class mdbtools.dbengine.MemoryData

MemoryDialog - Class in loci.plugins.in

Bio-Formats Importer memory usage confirmation dialog box.

MemoryDialog(ImportProcess) - Constructor for class loci.plugins.in.MemoryDialog

Creates a memory confirmation dialog for the Bio-Formats Importer.

MemoryRandomAccess - Class in mdbtools.examples

MemoryRandomAccess(byte[]) - Constructor for class mdbtools.examples.MemoryRandomAccess

merge(Map<String, Object>, Map<String, Object>, String) - Static method in class loci.formats.MetadataTools

Merges the given lists of metadata, prepending the specified prefix for the destination keys.

MergeCellsRecord - Class in loci.poi.hssf.record

Title: Merged Cells Record
Description: Optional record defining a square area of cells to "merged" into one cell.

MergeCellsRecord() - Constructor for class loci.poi.hssf.record.MergeCellsRecord

MergeCellsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MergeCellsRecord

Constructs a MergedCellsRecord and sets its fields appropriately

MergeCellsRecord.MergedRegion - Class in loci.poi.hssf.record

this is a low level representation of a MergedRegion of cells.

MergeCellsRecord.MergedRegion(int, int, short, short) - Constructor for class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

create a merged region all in one stroke.

mergeChannels(BufferedImage[]) - Static method in class loci.formats.gui.AWTImageTools

Merges the given images into a single multi-channel image.

merged - Variable in class loci.poi.hssf.model.Sheet

mergedRecords - Variable in class loci.poi.hssf.model.Sheet

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

meta - Variable in class loci.plugins.in.ImportProcess

metadata - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The IIOMetadata object containing metadata for the current image.

metadata - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The IIOMetadata object containing metadata for the current image.

metadata - Variable in class loci.formats.FormatReader

Hashtable containing metadata key/value pairs.

metadata - Variable in class loci.plugins.util.DataBrowser

metadataComplete - Variable in class loci.formats.CoreMetadata

Indicates whether or not we are confident that all of the metadata stored within the file has been parsed.

MetadataConverter - Class in loci.formats.meta

A utility class containing a method for piping a source MetadataRetrieve object into a destination MetadataStore.

MetadataLevel - Enum in loci.formats.in

Source code: Trac, Gitweb

MetadataOnly - Class in ome.xml.model

MetadataOnly() - Constructor for class ome.xml.model.MetadataOnly

Default constructor.

MetadataOnly(Element, OMEModel) - Constructor for class ome.xml.model.MetadataOnly

Constructs MetadataOnly recursively from an XML DOM tree.

MetadataOnly(MetadataOnly) - Constructor for class ome.xml.model.MetadataOnly

Copy constructor.

metadataOptions - Variable in class loci.formats.FormatReader

Metadata parsing options.

MetadataOptions - Interface in loci.formats.in

Source code: Trac, Gitweb

metadataRetrieve - Variable in class loci.formats.FormatWriter

Current metadata retrieval object.

MetadataRetrieve - Interface in loci.formats.meta

A proxy whose responsibility it is to extract biological image data from a particular storage medium.

MetadataRoot - Interface in loci.formats.meta

Abstract metadata root node.

metadataStore - Variable in class loci.formats.FormatReader

Current metadata store.

MetadataStore - Interface in loci.formats.meta

A proxy whose responsibility it is to marshal biological image data into a particular storage medium.

MetadataTools - Class in loci.formats

A utility class for working with metadata objects, including MetadataStore, MetadataRetrieve, and OME-XML strings.

MetakitException - Exception in ome.metakit

MetakitException is the exception thrown when something goes wrong when reading a Metakit database file.

MetakitException() - Constructor for exception ome.metakit.MetakitException

MetakitException(String) - Constructor for exception ome.metakit.MetakitException

MetakitException(String, Throwable) - Constructor for exception ome.metakit.MetakitException

MetakitException(Throwable) - Constructor for exception ome.metakit.MetakitException

MetakitReader - Class in ome.metakit

Top-level reader for Metakit database files.

MetakitReader(String) - Constructor for class ome.metakit.MetakitReader

MetakitReader(RandomAccessInputStream) - Constructor for class ome.metakit.MetakitReader

MetakitService - Interface in loci.formats.services

Interface defining methods for interacting with the OME Metakit library.

MetakitServiceImpl - Class in loci.formats.services

Implementation of MetakitService for interacting with the OME Metakit library.

MetakitServiceImpl() - Constructor for class loci.formats.services.MetakitServiceImpl

MetakitTools - Class in ome.metakit

Utility methods for working with Metakit database files.

MetakitTools() - Constructor for class ome.metakit.MetakitTools

MetamorphHandler - Class in loci.formats.in

MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.

MetamorphHandler() - Constructor for class loci.formats.in.MetamorphHandler

MetamorphHandler(Hashtable) - Constructor for class loci.formats.in.MetamorphHandler

MetamorphReader - Class in loci.formats.in

Reader is the file format reader for Metamorph STK files.

MetamorphReader() - Constructor for class loci.formats.in.MetamorphReader

Constructs a new Metamorph reader.

MetamorphTiffReader - Class in loci.formats.in

MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.

MetamorphTiffReader() - Constructor for class loci.formats.in.MetamorphTiffReader

Constructs a new Metamorph TIFF reader.

metaWindow - Variable in class loci.plugins.util.DataBrowser

METERING_MODE - Static variable in class loci.formats.tiff.IFD

METERING_MODE_AVERAGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_CENTER_WEIGHTED_AVERAGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_MAX_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_MIN_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_MULTI_SPOT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_OTHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_PARTIAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_PATTERN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_SPOT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

MIASReader - Class in loci.formats.in

MIASReader is the file format reader for Maia Scientific MIAS-2 datasets.

MIASReader() - Constructor for class loci.formats.in.MIASReader

Constructs a new MIAS reader.

MicrobeamManipulation - Class in ome.xml.model

MicrobeamManipulation() - Constructor for class ome.xml.model.MicrobeamManipulation

Default constructor.

MicrobeamManipulation(Element, OMEModel) - Constructor for class ome.xml.model.MicrobeamManipulation

Constructs MicrobeamManipulation recursively from an XML DOM tree.

MicrobeamManipulation(MicrobeamManipulation) - Constructor for class ome.xml.model.MicrobeamManipulation

Copy constructor.

MicrobeamManipulationRef - Class in ome.xml.model