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A

A4_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
A5_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
abort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
AbortableHSSFListener - Class in loci.poi.hssf.eventusermodel
Interface for use with the HSSFRequest and HSSFEventFactory.
AbortableHSSFListener() - Constructor for class loci.poi.hssf.eventusermodel.AbortableHSSFListener
 
abortableProcessEvents(HSSFRequest, InputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory
Processes a DocumentInputStream into essentially Record events.
abortableProcessRecord(Record) - Method in class loci.poi.hssf.eventusermodel.AbortableHSSFListener
Process an HSSF Record.
abortableProcessWorkbookEvents(HSSFRequest, POIFSFileSystem) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory
Processes a file into essentially record events.
About - Class in loci.plugins
Displays a small information dialog about the LOCI Plugins package.
About() - Constructor for class loci.plugins.About
 
about() - Static method in class loci.plugins.About
 
About - Class in loci.plugins.ome
Displays a small information dialog about the OME Plugins package.
About() - Constructor for class loci.plugins.ome.About
 
about() - Static method in class loci.plugins.ome.About
 
abs() - Method in class loci.plugins.util.RecordedImageProcessor
 
AbstractEscherHolderRecord - Class in loci.poi.hssf.record
The escher container record is used to hold escher records.
AbstractEscherHolderRecord() - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord
 
AbstractEscherHolderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord
Constructs a Bar record and sets its fields appropriately.
AbstractFunctionPtg - Class in loci.poi.hssf.record.formula
This class provides the base functionality for Excel sheet functions There are two kinds of function Ptgs - tFunc and tFuncVar Therefore, this class will have ONLY two subclasses
AbstractFunctionPtg() - Constructor for class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
AbstractLegacyAdapter<L,M> - Class in loci.legacy.adapter
Abstract superclass of all LegacyAdapter implementations.
AbstractLegacyAdapter() - Constructor for class loci.legacy.adapter.AbstractLegacyAdapter
 
AbstractNIOHandle - Class in loci.common
A legacy delegator to ome.scifio.io.AbstractNIOHandle.
AbstractNIOHandle() - Constructor for class loci.common.AbstractNIOHandle
 
AbstractNIOHandle - Class in ome.scifio.io
A wrapper for buffered NIO logic that implements the IRandomAccess interface.
AbstractNIOHandle() - Constructor for class ome.scifio.io.AbstractNIOHandle
 
AbstractOMEModelObject - Class in ome.xml.model
 
AbstractOMEModelObject() - Constructor for class ome.xml.model.AbstractOMEModelObject
 
AbstractOMEXMLMetadata - Class in loci.formats.ome
A utility class for constructing and manipulating OME-XML DOMs.
AbstractOMEXMLMetadata() - Constructor for class loci.formats.ome.AbstractOMEXMLMetadata
Creates a new OME-XML metadata object.
AbstractService - Class in loci.common.services
Source code: Trac, Gitweb
AbstractService() - Constructor for class loci.common.services.AbstractService
 
AbstractShape - Class in loci.poi.hssf.model
An abstract shape is the lowlevel model for a shape.
AbstractShape() - Constructor for class loci.poi.hssf.model.AbstractShape
 
accept(File) - Method in class loci.formats.gui.ComboFileFilter
Accepts files with the proper filename prefix.
accept(File) - Method in class loci.formats.gui.ExtensionFileFilter
Accepts files with the proper extensions.
accept(File) - Method in class loci.formats.gui.FormatFileFilter
Accepts files in accordance with the file format reader.
accept(File) - Method in class loci.formats.gui.NoExtensionFileFilter
Accepts files with no extension.
accept(String) - Method in class loci.formats.NumberFilter
Tests if a specified file should be included in a file list.
accept(File) - Method in class loci.formats.NumberFilter
Tests if a specified file should be included in a file list.
accumulate - Variable in class loci.formats.in.SDTInfo
 
AcquisitionMode - Enum in ome.xml.model.enums
 
AcquisitionModeEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for AcquisitionMode.
AcquisitionModeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler
 
actionPerformed(ActionEvent) - Method in class loci.formats.gui.CacheComponent
Handles combo box changes.
actionPerformed(ActionEvent) - Method in class loci.formats.gui.DataConverter
 
actionPerformed(ActionEvent) - Method in class loci.formats.gui.ImageViewer
Handles menu commands.
actionPerformed(ActionEvent) - Method in class loci.formats.tools.EditTiffG
 
actionPerformed(ActionEvent) - Method in class loci.plugins.config.ConfigWindow
 
actionPerformed(ActionEvent) - Method in class loci.plugins.in.SeriesDialog
 
actionPerformed(ActionEvent) - Method in class loci.plugins.shortcut.ShortcutPanel
Handles button presses.
actionPerformed(ActionEvent) - Method in class loci.plugins.util.DataBrowser
 
actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow
 
ACTIVE_PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord
 
ACTIVE_PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord
 
ACTIVE_PANE_UPER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord
 
ACTIVE_PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord
 
activeSrcHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The height of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.
activeSrcMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The X coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.
activeSrcMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The Y coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.
activeSrcWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The width of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.
AdapterTools - Class in loci.legacy.adapter
A collection of LegacyAdapters for wrapping (and thereby delegating) between Legacy classes and their Modern equivalents.
AdapterTools() - Constructor for class loci.legacy.adapter.AdapterTools
 
adcDE - Variable in class loci.formats.in.SDTInfo
ADC sample delay (SPC-930).
adcRE - Variable in class loci.formats.in.SDTInfo
 
adcZoom - Variable in class loci.formats.in.SDTInfo
 
add(IniTable) - Method in class loci.common.IniList
 
add(int, IniTable) - Method in class loci.common.IniList
 
add(byte) - Method in class loci.formats.codec.ByteVector
 
add(byte[]) - Method in class loci.formats.codec.ByteVector
 
add(byte[], int, int) - Method in class loci.formats.codec.ByteVector
 
add(double) - Method in class loci.plugins.util.RecordedImageProcessor
 
add(int) - Method in class loci.plugins.util.RecordedImageProcessor
 
add(int, Record) - Method in class loci.poi.hssf.model.WorkbookRecordList
 
add(int, double) - Method in class loci.poi.util.DoubleList
add the specfied value at the specified index
add(double) - Method in class loci.poi.util.DoubleList
Appends the specified element to the end of this list
add(int, int) - Method in class loci.poi.util.IntList
add the specfied value at the specified index
add(int) - Method in class loci.poi.util.IntList
Appends the specified element to the end of this list
add(Object) - Method in class loci.poi.util.IntMapper
Appends the specified element to the end of this list
add(int, short) - Method in class loci.poi.util.ShortList
add the specfied value at the specified index
add(short) - Method in class loci.poi.util.ShortList
Appends the specified element to the end of this list
add1DBits(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Get code for run and add to compressed bitstream.
add2DBits(byte[], int, int[][], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Place entry from mode table into compressed bitstream.
addAll(Collection<? extends IniTable>) - Method in class loci.common.IniList
 
addAll(int, Collection<? extends IniTable>) - Method in class loci.common.IniList
 
addAll(DoubleList) - Method in class loci.poi.util.DoubleList
Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.
addAll(int, DoubleList) - Method in class loci.poi.util.DoubleList
Inserts all of the elements in the specified collection into this list at the specified position.
addAll(IntList) - Method in class loci.poi.util.IntList
Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.
addAll(int, IntList) - Method in class loci.poi.util.IntList
Inserts all of the elements in the specified collection into this list at the specified position.
addAll(ShortList) - Method in class loci.poi.util.ShortList
Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.
addAll(int, ShortList) - Method in class loci.poi.util.ShortList
Inserts all of the elements in the specified collection into this list at the specified position.
addAllowedTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
Adds a TIFFTagSet object to the list of allowed tag sets.
addArea(int, short, int, short) - Method in class loci.poi.hssf.record.MergeCellsRecord
Add an area to consider a merged cell.
addBinData(BinData) - Method in class ome.xml.model.Mask
 
addBinData(BinData) - Method in class ome.xml.model.Pixels
 
addBooleanAnnotation(BooleanAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
addBreak(short, short, short) - Method in class loci.poi.hssf.record.PageBreakRecord
Adds the page break at the specified parameters
addBSERecord(EscherBSERecord) - Method in class loci.poi.hssf.model.Workbook
 
addByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer
Adds the specified data to the end of the byte array stream.
addCacheListener(CacheListener) - Method in class loci.formats.cache.Cache
 
addCacheListener(CacheListener) - Method in interface loci.formats.cache.CacheReporter
Adds a listener for status update events.
addCacheListener(CacheListener) - Method in class loci.formats.cache.CacheStrategy
 
addCellOffset(short) - Method in class loci.poi.hssf.record.DBCellRecord
 
addChannel(Channel) - Method in class ome.xml.model.Pixels
 
addChar(char, int) - Method in class loci.poi.hssf.usermodel.FontDetails
 
addChars(char[], int[]) - Method in class loci.poi.hssf.usermodel.FontDetails
 
AddCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
 
addCheckbox(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog
Adds a checkbox to the given dialog object corresponding to the boolean option identified by the specified key.
addChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty
Add a new child to the collection of children
addChild(Property) - Method in interface loci.poi.poifs.property.Parent
Add a new child to the collection of children
addChildRecord(EscherRecord) - Method in class loci.poi.ddf.EscherContainerRecord
 
addChildRecord(EscherRecord) - Method in class loci.poi.ddf.UnknownEscherRecord
 
addChoice(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog
Adds a choice to the given dialog object corresponding to the string option identified by the specified key.
addClass(Class<? extends T>) - Method in class loci.formats.ClassList
Adds the given class, which must be assignable to the base class, to the list.
addCluster(int, int) - Method in class loci.poi.ddf.EscherDggRecord
 
addColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette
Adds a new color into an empty color slot.
addColumn(Object) - Method in class mdbtools.dbengine.sql.Select
 
addComment(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
addCommentAnnotation(CommentAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
addDataset(Dataset) - Method in class ome.xml.model.OME
 
addDbcell(int) - Method in class loci.poi.hssf.record.IndexRecord
 
addDetector(Detector) - Method in class ome.xml.model.Instrument
 
addDichroic(Dichroic) - Method in class ome.xml.model.Instrument
 
addDoubleAnnotation(DoubleAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
addEntry(Comparable<Object>, DefaultListModel) - Static method in class loci.plugins.config.ConfigWindow
 
addEOFB(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Add an End-of-Facsimile-Block (EOFB == 0x001001) to the compressed bitstream.
addEOL(boolean, boolean, boolean, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Add an End-of-Line (EOL == 0x001) to the compressed bitstream with optional byte alignment.
addEscherProperty(EscherProperty) - Method in class loci.poi.ddf.EscherOptRecord
Add a property to this record.
addEscherRecord(int, EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
addEscherRecord(EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
addExperiment(Experiment) - Method in class ome.xml.model.OME
 
addExperimenter(Experimenter) - Method in class ome.xml.model.OME
 
addExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.OME
 
addFileAnnotation(FileAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
addFilter(Filter) - Method in class ome.xml.model.Instrument
 
addFilterSet(FilterSet) - Method in class ome.xml.model.Instrument
 
addFormatRun(UnicodeString.FormatRun) - Method in class loci.poi.hssf.record.UnicodeString
Adds a font run to the formatted string.
addGlobalMeta(String, Object) - Method in class loci.formats.FormatReader
Adds an entry to the global metadata table.
addGlobalMeta(String, boolean) - Method in class loci.formats.FormatReader
Adds an entry to the global metadata table.
addGlobalMeta(String, byte) - Method in class loci.formats.FormatReader
Adds an entry to the global metadata table.
addGlobalMeta(String, short) - Method in class loci.formats.FormatReader
Adds an entry to the global metadata table.
addGlobalMeta(String, int) - Method in class loci.formats.FormatReader
Adds an entry to the global metadata table.
addGlobalMeta(String, long) - Method in class loci.formats.FormatReader
Adds an entry to the global metadata table.
addGlobalMeta(String, float) - Method in class loci.formats.FormatReader
Adds an entry to the global metadata table.
addGlobalMeta(String, double) - Method in class loci.formats.FormatReader
Adds an entry to the global metadata table.
addGlobalMeta(String, char) - Method in class loci.formats.FormatReader
Adds an entry to the global metadata table.
addGlobalMetaList(String, Object) - Method in class loci.formats.FormatReader
 
addGroupBy(FQColumn) - Method in class mdbtools.dbengine.sql.Select
 
addImage(Image) - Method in class ome.xml.model.OME
 
addInfoRecord(ExtSSTInfoSubRecord) - Method in class loci.poi.hssf.record.ExtSSTRecord
 
addInstrument(Instrument) - Method in class ome.xml.model.OME
 
addLightSource(LightSource) - Method in class ome.xml.model.Instrument
 
addLightSourceSettings(LightSourceSettings) - Method in class ome.xml.model.MicrobeamManipulation
 
addListAnnotation(ListAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
addListener(HSSFListener, short) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest
add an event listener for a particular record type.
addListenerForAllRecords(HSSFListener) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest
This is the equivilent of calling addListener(myListener, sid) for EVERY record in the loci.poi.hssf.record package.
addLongAnnotation(LongAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
addMergedRegion(int, short, int, short) - Method in class loci.poi.hssf.model.Sheet
 
addMergedRegion(Region) - Method in class loci.poi.hssf.usermodel.HSSFSheet
adds a merged region of cells (hence those cells form one)
addMeta(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader
Adds an entry to the specified Hashtable.
addMetadataOnly(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService
Insert a MetadataOnly element under the Image specified by 'index' in the given OME-XML metadata object.
addMetadataOnly(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
 
addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experiment
 
addModelObject(String, OMEModelObject) - Method in interface ome.xml.model.OMEModel
 
addModelObject(String, OMEModelObject) - Method in class ome.xml.model.OMEModelImpl
 
addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in interface loci.formats.services.OMEXMLService
Adds ModuloAlong* annotations to the given OME-XML metadata object, using the given CoreMetadata object to determine modulo dimensions.
addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
 
addName(NameRecord) - Method in class loci.poi.hssf.model.Workbook
creates new name
addNode(Box) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
addNTP(int, int) - Method in class jj2000.j2k.codestream.reader.CBlkInfo
Adds the number of new truncation for specified layer.
addObjective(Objective) - Method in class ome.xml.model.Instrument
 
addOptPoint(float, int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo
Adds a new optimization point, with target bitrate 'brate' and with 'elyrs' (unoptimized) extra layers after it.
addOrderBy(OrderBy) - Method in class mdbtools.dbengine.sql.Select
 
addPicture(byte[], int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Adds a picture to the workbook.
addPlane(Plane) - Method in class ome.xml.model.Pixels
 
addPlate(Plate) - Method in class ome.xml.model.OME
 
addPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Plate
 
addPossible(String) - Method in class loci.plugins.prefs.StringOption
Adds a possible value to the list.
addProject(Project) - Method in class ome.xml.model.OME
 
addProperty(Property) - Method in class loci.poi.poifs.property.PropertyTable
Add a property to the list of properties we manage
AddPtg - Class in loci.poi.hssf.record.formula
Addition operator PTG the "+" binomial operator.
AddPtg() - Constructor for class loci.poi.hssf.record.formula.AddPtg
Creates new AddPtg
AddPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AddPtg
 
addReagent(Reagent) - Method in class ome.xml.model.Screen
 
addReference(OMEModelObject, Reference) - Method in interface ome.xml.model.OMEModel
 
addReference(OMEModelObject, Reference) - Method in class ome.xml.model.OMEModelImpl
 
addREFRecord(ExternSheetSubRecord) - Method in class loci.poi.hssf.record.ExternSheetRecord
adds REF struct (ExternSheetSubRecord)
addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
addROI(ROI) - Method in class ome.xml.model.OME
 
addRow(RowRecord) - Method in class loci.poi.hssf.model.Sheet
Adds a row record to the sheet
addRow(Object[]) - Method in class mdbtools.dbengine.MemoryData
Add a row of data
addScreen(Screen) - Method in class ome.xml.model.OME
 
addScrollBars(Container) - Static method in class loci.plugins.util.WindowTools
Adds AWT scroll bars to the given container.
addSection(Section) - Method in class loci.poi.hpsf.MutablePropertySet
Adds a section to this property set.
addSection(Section) - Method in class loci.poi.hpsf.SpecialPropertySet
 
addSeriesMeta(String, Object) - Method in class loci.formats.FormatReader
Adds an entry to the metadata table for the current series.
addSeriesMeta(String, boolean) - Method in class loci.formats.FormatReader
Adds an entry to the metadata table for the current series.
addSeriesMeta(String, byte) - Method in class loci.formats.FormatReader
Adds an entry to the metadata table for the current series.
addSeriesMeta(String, short) - Method in class loci.formats.FormatReader
Adds an entry to the metadata table for the current series.
addSeriesMeta(String, int) - Method in class loci.formats.FormatReader
Adds an entry to the metadata table for the current series.
addSeriesMeta(String, long) - Method in class loci.formats.FormatReader
Adds an entry to the metadata table for the current series.
addSeriesMeta(String, float) - Method in class loci.formats.FormatReader
Adds an entry to the metadata table for the current series.
addSeriesMeta(String, double) - Method in class loci.formats.FormatReader
Adds an entry to the metadata table for the current series.
addSeriesMeta(String, char) - Method in class loci.formats.FormatReader
Adds an entry to the metadata table for the current series.
addSeriesMetaList(String, Object) - Method in class loci.formats.FormatReader
 
addShape(Shape) - Method in class ome.xml.model.Union
 
addSheetReference(String, int) - Method in class loci.poi.hssf.util.SheetReferences
 
addShortOrLongField(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
addSSTString(UnicodeString) - Method in class loci.poi.hssf.model.Workbook
Adds a string to the SST table and returns its index (if its a duplicate just returns its index and update the counts) ASSUMES compressed unicode (meaning 8bit)
addSSTString(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Deprecated.
Do not call this method from your applications. Use the methods available in the HSSFRow to add string HSSFCells
addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.AbstractShape
Add standard properties to the opt record.
addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.CommentShape
Sets standard escher options for a comment.
addStatusListener(StatusListener) - Method in class loci.common.adapter.StatusReporterAdapter.LegacyWrapper
 
addStatusListener(StatusListener) - Method in class loci.common.adapter.StatusReporterAdapter.ModernWrapper
 
addStatusListener(StatusListener) - Method in interface loci.common.StatusReporter
 
addStatusListener(StatusListener) - Method in class loci.plugins.in.ImagePlusReader
 
addStatusListener(StatusListener) - Method in class loci.plugins.in.ImportProcess
 
addStatusListener(StatusListener) - Method in interface ome.scifio.common.StatusReporter
 
addString(UnicodeString) - Method in class loci.poi.hssf.record.SSTRecord
Add a string.
addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
Add a new string to the string table.
addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
Add a new string to the string table.
addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
Add a new string to the string table.
addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
Add a new string to the string table.
addSubRecord(int, Object) - Method in class loci.poi.hssf.record.ObjRecord
 
addSubRecord(Object) - Method in class loci.poi.hssf.record.ObjRecord
 
addTable(Object) - Method in class mdbtools.dbengine.sql.Select
 
addTagAnnotation(TagAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
addTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Adds an element to the group of TIFFTagSets of which this directory is aware.
addTermAnnotation(TermAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
addTiffData(TiffData) - Method in class ome.xml.model.Pixels
 
addTIFFField(TIFFField) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Adds a TIFF field to the directory.
addTimestampAnnotation(TimestampAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
addValueName(int, String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Adds a mnemonic name for a particular value that this tag's data may take on.
addValueRecord(int, CellValueRecordInterface) - Method in class loci.poi.hssf.model.Sheet
Adds a value record to the sheet's contained binary records (i.e.
addWell(Well) - Method in class ome.xml.model.Plate
 
addWellSample(WellSample) - Method in class ome.xml.model.Well
 
addXMLAnnotation(XMLAnnotation) - Method in class ome.xml.model.StructuredAnnotations
 
adjustmentValueChanged(AdjustmentEvent) - Method in class loci.plugins.util.DataBrowser
 
AffineTransform - Class in ome.xml.model
 
AffineTransform() - Constructor for class ome.xml.model.AffineTransform
Default constructor.
AffineTransform(Element, OMEModel) - Constructor for class ome.xml.model.AffineTransform
Constructs AffineTransform recursively from an XML DOM tree.
AffineTransform(AffineTransform) - Constructor for class ome.xml.model.AffineTransform
Copy constructor.
AFIReader - Class in loci.formats.in
AFIReader is the file format reader for Aperio AFI files.
AFIReader() - Constructor for class loci.formats.in.AFIReader
Constructs a new AFI reader.
afterRecordSerialize(int, short, int, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener
Fired after a record has been serialized.
afterRecordSerialize(int, short, int, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener
 
Aggregate - Interface in mdbtools.dbengine.functions
 
aggregateDrawingRecords(DrawingManager2) - Method in class loci.poi.hssf.model.Sheet
 
AggregateMetadata - Class in loci.formats.meta
A metadata store which delegates the actual storage to one or more sub metadata stores.
AggregateMetadata(List<BaseMetadata>) - Constructor for class loci.formats.meta.AggregateMetadata
Creates a new instance.
AggregateQuery - Class in mdbtools.dbengine.tasks
resolve the columns, num rows not the same
AggregateQuery(Task, Select, int[]) - Constructor for class mdbtools.dbengine.tasks.AggregateQuery
 
AIMReader - Class in loci.formats.in
AIMReader is the file format reader for .aim files.
AIMReader() - Constructor for class loci.formats.in.AIMReader
Constructs a new AIM reader.
AL3D_MAGIC_STRING - Static variable in class loci.formats.in.AliconaReader
 
AliconaReader - Class in loci.formats.in
AliconaReader is the file format reader for Alicona AL3D files.
AliconaReader() - Constructor for class loci.formats.in.AliconaReader
Constructs a new Alicona reader.
ALIGN_CENTER - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
center horizontal alignment
ALIGN_CENTER_SELECTION - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
center-selection? horizontal alignment
ALIGN_FILL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
fill? horizontal alignment
ALIGN_GENERAL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
general (normal) horizontal alignment
ALIGN_JUSTIFY - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
justified horizontal alignment
ALIGN_LEFT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
left-justified horizontal alignment
ALIGN_RIGHT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
right-justified horizontal alignment
ALL_DOMAINS - Static variable in class loci.formats.FormatTools
List of all supported domains.
allBlockLengths - Variable in class loci.formats.in.SDTInfo
 
allBlockOffsets - Variable in class loci.formats.in.SDTInfo
 
allocate(int...) - Static method in class loci.common.DataTools
Allocates a 1-dimensional byte array matching the product of the given sizes.
allocate(long, int) - Method in class loci.common.NIOByteBufferProvider
Allocates or maps the desired file data into memory.
allocate(int...) - Static method in class ome.scifio.common.DataTools
Allocates a 1-dimensional byte array matching the product of the given sizes.
allocate(long, int) - Method in class ome.scifio.io.NIOByteBufferProvider
Allocates or maps the desired file data into memory.
allocateDirect(long, int) - Method in class loci.common.NIOByteBufferProvider
Allocates memory and copies the desired file data into it.
allocateDirect(long, int) - Method in class ome.scifio.io.NIOByteBufferProvider
Allocates memory and copies the desired file data into it.
allocateMappedByteBuffer(long, int) - Method in class loci.common.NIOByteBufferProvider
Memory maps the desired file data into memory.
allocateMappedByteBuffer(long, int) - Method in class ome.scifio.io.NIOByteBufferProvider
Memory maps the desired file data into memory.
allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager
Allocates new shape id for the new drawing group id.
allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager2
Allocates new shape id for the new drawing group id.
allocateSpace(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter
Allocate space for a block of indices
allowShow - Variable in class loci.plugins.util.DataBrowser
 
ALPHA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
The value of the first lifting step coefficient
ALPHA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
The value of the first lifting step coefficient
alphabeticIndexCount(String) - Static method in class loci.formats.ResourceNamer
 
alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
alreadyChecked() - Method in class loci.formats.UpgradeChecker
Return true if an upgrade check has already been performed in this JVM session.
ALT_BARS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
ALT_BARS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Wide dots
alt_pg_buf - Variable in class mdbtools.libmdb.MdbHandle
 
ALT_ZVI - Static variable in class loci.common.DateTools
 
ALT_ZVI - Static variable in class ome.scifio.common.DateTools
 
ALT_ZVI_EPOCH - Static variable in class loci.common.DateTools
 
ALT_ZVI_EPOCH - Static variable in class ome.scifio.common.DateTools
 
ALTITUDE_REF_SEA_LEVEL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSAltitudeRef" tag.
ALTITUDE_REF_SEA_LEVEL_REFERENCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSAltitudeRef" tag.
AmiraParameters - Class in loci.formats.tools
AmiraParameters handles parsing and writing of AmiraMesh headers.
AmiraParameters(String) - Constructor for class loci.formats.tools.AmiraParameters
 
AmiraParameters(RandomAccessInputStream) - Constructor for class loci.formats.tools.AmiraParameters
 
AmiraReader - Class in loci.formats.in
This is a file format reader for AmiraMesh data.
AmiraReader() - Constructor for class loci.formats.in.AmiraReader
 
analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.
analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
A specific version of the analyze_hpf() method that works on int data.
analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
The general version of the analyze_hpf() method, it just calls the specialized version.
analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
An implementation of the analyze_hpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.
analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
A specific version of the analyze_hpf() method that works on int data.
analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
The general version of the analyze_hpf() method, it just calls the specialized version.
analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
An implementation of the analyze_hpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.
analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.
analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
A specific version of the analyze_lpf() method that works on int data.
analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
The general version of the analyze_lpf() method, it just calls the specialized version.
analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
An implementation of the analyze_lpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.
analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
A specific version of the analyze_lpf() method that works on int data.
analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
The general version of the analyze_lpf() method, it just calls the specialized version.
analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
An implementation of the analyze_lpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.
AnalyzeReader - Class in loci.formats.in
AnalyzeReader is the file format reader for Analyze 7.5 files.
AnalyzeReader() - Constructor for class loci.formats.in.AnalyzeReader
Constructs a new Analyze reader.
anbytes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Actual number of read bytes
ANCHOR_ID_CHART_TITLE - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
 
ANCHOR_ID_SERIES_OR_POINT - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
 
ANCHOR_ID_X_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
 
ANCHOR_ID_Y_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
 
ANCHOR_ID_Z_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
 
and(int) - Method in class loci.plugins.util.RecordedImageProcessor
 
AND - Static variable in class mdbtools.dbengine.sql.Condition
 
anGainExp - Variable in class jj2000.j2k.wavelet.Subband
The base 2 exponent of the analysis gain of the subband.
anim - Variable in class loci.formats.gui.ImageViewer
 
anim - Variable in class loci.plugins.util.DataBrowser
 
animate - Variable in class loci.plugins.util.DataBrowser
 
ANIMATION_KEY - Static variable in class loci.formats.gui.ImageViewer
 
Annotation - Class in ome.xml.model
 
Annotation() - Constructor for class ome.xml.model.Annotation
Default constructor.
Annotation(Element, OMEModel) - Constructor for class ome.xml.model.Annotation
Constructs Annotation recursively from an XML DOM tree.
Annotation(Annotation) - Constructor for class ome.xml.model.Annotation
Copy constructor.
AnnotationRef - Class in ome.xml.model
 
AnnotationRef() - Constructor for class ome.xml.model.AnnotationRef
Default constructor.
AnnotationRef(Element, OMEModel) - Constructor for class ome.xml.model.AnnotationRef
Constructs AnnotationRef recursively from an XML DOM tree.
AnnotationRef(AnnotationRef) - Constructor for class ome.xml.model.AnnotationRef
Copy constructor.
ANO_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
 
ANSI_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont
ANSI character set
AnWTFilter - Class in jj2000.j2k.wavelet.analysis
This abstract class defines the methods of all analysis wavelet filters.
AnWTFilter() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilter
 
AnWTFilterFloat - Class in jj2000.j2k.wavelet.analysis
This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for float data specifically.
AnWTFilterFloat() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
 
AnWTFilterFloatLift9x7 - Class in jj2000.j2k.wavelet.analysis
This class inherits from the analysis wavelet filter definition for int data.
AnWTFilterFloatLift9x7() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
 
AnWTFilterInt - Class in jj2000.j2k.wavelet.analysis
This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for int data specifically.
AnWTFilterInt() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterInt
 
AnWTFilterIntLift5x3 - Class in jj2000.j2k.wavelet.analysis
This class inherits from the analysis wavelet filter definition for int data.
AnWTFilterIntLift5x3() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
 
AnWTFilterSpec - Class in jj2000.j2k.wavelet.analysis
This class extends ModuleSpec class for analysis filters specification holding purpose.
AnWTFilterSpec(int, int, byte, QuantTypeSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
Constructs a new 'AnWTFilterSpec' for the specified number of components and tiles.
APERIO_IMAGE_DESCRIPTION_PREFIX - Static variable in class loci.formats.in.SVSReader
TIFF image description prefix for Aperio SVS files.
APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD
 
APLReader - Class in loci.formats.in
APLReader is the file format reader for Olympus APL files.
APLReader() - Constructor for class loci.formats.in.APLReader
Constructs a new APL reader.
APNGReader - Class in loci.formats.in
APNGReader is the file format reader for Animated Portable Network Graphics (APNG) images.
APNGReader() - Constructor for class loci.formats.in.APNGReader
Constructs a new APNGReader.
APNGWriter - Class in loci.formats.out
APNGWriter is the file format writer for PNG and APNG files.
APNGWriter() - Constructor for class loci.formats.out.APNGWriter
 
append(ILoggingEvent) - Method in class loci.plugins.util.IJStatusEchoer
 
appendChild(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
appendServerMap(String, String) - Static method in class loci.formats.in.FlexReader
Add the path 'realName' to the mapping for the server named 'alias'.
applicationData - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
applicationIDs - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
applyCalibration(ImagePlus) - Method in class loci.plugins.in.Calibrator
Applies spatial calibrations to an image stack.
applyColors(List<ImagePlus>) - Method in class loci.plugins.in.Colorizer
 
applyFont(int, int, short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
Applies a font to the specified characters of a string.
applyFont(int, int, HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
Applies a font to the specified characters of a string.
applyFont(HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
Sets the font of the entire string.
applyFont(short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
Applies the specified font to the entire string.
applyMethodStack(List<RecordedImageProcessor.MethodEntry>) - Method in class loci.plugins.util.RecordedImageProcessor
 
applyTable(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
 
arate - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Actual decoding rate in bpp
ArbROIMaskGenerator - Class in jj2000.j2k.roi.encoder
This class generates the ROI bit-mask when, at least, one ROI is not rectangular.
ArbROIMaskGenerator(ROI[], int, Quantizer) - Constructor for class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
The constructor of the arbitrary mask generator
arbShape - Variable in class jj2000.j2k.roi.encoder.ROI
Where or not the ROI shape is arbitrary
Arc - Class in ome.xml.model
 
Arc() - Constructor for class ome.xml.model.Arc
Default constructor.
Arc(Element, OMEModel) - Constructor for class ome.xml.model.Arc
Constructs Arc recursively from an XML DOM tree.
Arc(Arc) - Constructor for class ome.xml.model.Arc
Copy constructor.
ARCHIVE - Static variable in class loci.formats.in.FlexReader
 
ArcType - Enum in ome.xml.model.enums
 
ArcTypeEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for ArcType.
ArcTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ArcTypeEnumHandler
 
Area3DPtg - Class in loci.poi.hssf.record.formula
Title: Area 3D Ptg - 3D referecnce (Sheet + Area)
Area3DPtg() - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
Creates new AreaPtg
Area3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
 
Area3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
 
AreaAPtg - Class in loci.poi.hssf.record.formula
Specifies a rectangular area of cells A1:A4 for instance.
AreaAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
 
AreaAPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
 
AreaAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
 
AreaErrPtg - Class in loci.poi.hssf.record.formula
AreaErr - handles deleted cell area references.
AreaErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg
 
AreaFormatRecord - Class in loci.poi.hssf.record
The area format record is used to define the colours and patterns for an area.
AreaFormatRecord() - Constructor for class loci.poi.hssf.record.AreaFormatRecord
 
AreaFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaFormatRecord
Constructs a AreaFormat record and sets its fields appropriately.
AreaNAPtg - Class in loci.poi.hssf.record.formula
Specifies a rectangular area of cells A1:A4 for instance.
AreaNAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg
 
AreaNAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg
 
AreaNPtg - Class in loci.poi.hssf.record.formula
Specifies a rectangular area of cells A1:A4 for instance.
AreaNPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNPtg
 
AreaNPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNPtg
 
AreaNVPtg - Class in loci.poi.hssf.record.formula
Specifies a rectangular area of cells A1:A4 for instance.
AreaNVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg
 
AreaNVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg
 
AreaPtg - Class in loci.poi.hssf.record.formula
Specifies a rectangular area of cells A1:A4 for instance.
AreaPtg() - Constructor for class loci.poi.hssf.record.formula.AreaPtg
 
AreaPtg(String) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
 
AreaPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
 
AreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
 
AreaRecord - Class in loci.poi.hssf.record
The area record is used to define a area chart.
AreaRecord() - Constructor for class loci.poi.hssf.record.AreaRecord
 
AreaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaRecord
Constructs a Area record and sets its fields appropriately.
AreaReference - Class in loci.poi.hssf.util
 
AreaReference(String) - Constructor for class loci.poi.hssf.util.AreaReference
Create an area ref from a string representation
AreaVPtg - Class in loci.poi.hssf.record.formula
Specifies a rectangular area of cells A1:A4 for instance.
AreaVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
 
AreaVPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
 
AreaVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
 
ARFReader - Class in loci.formats.in
ARFReader is the file format reader for Axon Raw Format (ARF) files, produced by INDEC BioSystems's Imaging Workbench software.
ARFReader() - Constructor for class loci.formats.in.ARFReader
Constructs a new ARF reader.
arg - Variable in class loci.plugins.LociExporter
Argument passed to setup method.
args - Static variable in class loci.plugins.shortcut.ShortcutPanel
Details for installed LOCI plugins.
arraycopy(byte[], int, byte[], int, int) - Static method in class loci.poi.util.ArrayUtil
This is really a debugging version of System.arraycopy().
arrayMoveWithin(Object[], int, int, int) - Static method in class loci.poi.util.ArrayUtil
Moves a number of entries in an array to another point in the array, shifting those inbetween as required.
ArrayPtg - Class in loci.poi.hssf.record.formula
ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.
ArrayPtg() - Constructor for class loci.poi.hssf.record.formula.ArrayPtg
 
ArrayPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtg
 
ArrayPtgA - Class in loci.poi.hssf.record.formula
ArrayPtgA - handles arrays
ArrayPtgA() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA
 
ArrayPtgA(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA
 
ArrayPtgV - Class in loci.poi.hssf.record.formula
ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.
ArrayPtgV() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV
 
ArrayPtgV(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV
 
ArrayUtil - Class in jj2000.j2k.util
This class contains a colleaction of utility static methods for arrays.
ArrayUtil() - Constructor for class jj2000.j2k.util.ArrayUtil
 
ArrayUtil - Class in loci.poi.util
Utility classes for dealing with arrays.
ArrayUtil() - Constructor for class loci.poi.util.ArrayUtil
 
ARTIST - Static variable in class loci.formats.tiff.IFD
 
ascii - Variable in class loci.formats.tools.AmiraParameters
 
AsciiImage - Class in loci.formats.tools
A utility class for outputting a BufferedImage as ASCII text.
AsciiImage(BufferedImage) - Constructor for class loci.formats.tools.AsciiImage
 
asDateTime(DateTimeZone) - Method in class ome.xml.model.primitives.Timestamp
Returns the timestamp as a Joda DateTime type.
asInstant() - Method in class ome.xml.model.primitives.Timestamp
Returns the timestamp as a Joda DateTime type.
asRetrieve(MetadataStore) - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.asRetrieve(MetadataStore) instead.
asRetrieve(MetadataStore) - Method in interface loci.formats.services.OMEXMLService
Gets the given MetadataStore object as a MetadataRetrieve.
asRetrieve(MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
 
assertId(String, boolean, int) - Static method in class loci.formats.FormatTools
Asserts that the current file is either null, or not, according to the given flag.
assoicateShapeToObjRecord(EscherRecord, Record) - Method in class loci.poi.hssf.record.EscherAggregate
Associates an escher record to an OBJ record or a TXO record.
asStore(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService
Gets the given MetadataRetrieve object as a MetadataStore.
asStore(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
 
ASTRONOMY_DOMAIN - Static variable in class loci.formats.FormatTools
Identifies the astronomy domain.
asXMLElement(Document) - Method in class ome.xml.model.AbstractOMEModelObject
 
asXMLElement(Document, Element) - Method in class ome.xml.model.AbstractOMEModelObject
Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
asXMLElement(Document) - Method in class ome.xml.model.AffineTransform
 
asXMLElement(Document, Element) - Method in class ome.xml.model.AffineTransform
 
asXMLElement(Document) - Method in class ome.xml.model.Annotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Annotation
 
asXMLElement(Document) - Method in class ome.xml.model.AnnotationRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.AnnotationRef
 
asXMLElement(Document) - Method in class ome.xml.model.Arc
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Arc
 
asXMLElement(Document) - Method in class ome.xml.model.BasicAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.BasicAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.BinaryFile
 
asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryFile
 
asXMLElement(Document) - Method in class ome.xml.model.BinaryOnly
 
asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryOnly
 
asXMLElement(Document) - Method in class ome.xml.model.BinData
 
asXMLElement(Document, Element) - Method in class ome.xml.model.BinData
 
asXMLElement(Document) - Method in class ome.xml.model.BooleanAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.BooleanAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.Channel
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Channel
 
asXMLElement(Document) - Method in class ome.xml.model.ChannelRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ChannelRef
 
asXMLElement(Document) - Method in class ome.xml.model.CommentAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.CommentAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.Dataset
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Dataset
 
asXMLElement(Document) - Method in class ome.xml.model.DatasetRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.DatasetRef
 
asXMLElement(Document) - Method in class ome.xml.model.Detector
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Detector
 
asXMLElement(Document) - Method in class ome.xml.model.DetectorSettings
 
asXMLElement(Document, Element) - Method in class ome.xml.model.DetectorSettings
 
asXMLElement(Document) - Method in class ome.xml.model.Dichroic
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Dichroic
 
asXMLElement(Document) - Method in class ome.xml.model.DichroicRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.DichroicRef
 
asXMLElement(Document) - Method in class ome.xml.model.DoubleAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.DoubleAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.Ellipse
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Ellipse
 
asXMLElement(Document) - Method in class ome.xml.model.EmissionFilterRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.EmissionFilterRef
 
asXMLElement(Document) - Method in class ome.xml.model.ExcitationFilterRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ExcitationFilterRef
 
asXMLElement(Document) - Method in class ome.xml.model.Experiment
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Experiment
 
asXMLElement(Document) - Method in class ome.xml.model.Experimenter
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Experimenter
 
asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroup
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroup
 
asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroupRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroupRef
 
asXMLElement(Document) - Method in class ome.xml.model.ExperimenterRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterRef
 
asXMLElement(Document) - Method in class ome.xml.model.ExperimentRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimentRef
 
asXMLElement(Document) - Method in class ome.xml.model.External
 
asXMLElement(Document, Element) - Method in class ome.xml.model.External
 
asXMLElement(Document) - Method in class ome.xml.model.Filament
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Filament
 
asXMLElement(Document) - Method in class ome.xml.model.FileAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.FileAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.Filter
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Filter
 
asXMLElement(Document) - Method in class ome.xml.model.FilterRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.FilterRef
 
asXMLElement(Document) - Method in class ome.xml.model.FilterSet
 
asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSet
 
asXMLElement(Document) - Method in class ome.xml.model.FilterSetRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSetRef
 
asXMLElement(Document) - Method in class ome.xml.model.Image
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Image
 
asXMLElement(Document) - Method in class ome.xml.model.ImageRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ImageRef
 
asXMLElement(Document) - Method in class ome.xml.model.ImagingEnvironment
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ImagingEnvironment
 
asXMLElement(Document) - Method in class ome.xml.model.Instrument
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Instrument
 
asXMLElement(Document) - Method in class ome.xml.model.InstrumentRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.InstrumentRef
 
asXMLElement(Document) - Method in class ome.xml.model.Label
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Label
 
asXMLElement(Document) - Method in class ome.xml.model.Laser
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Laser
 
asXMLElement(Document) - Method in class ome.xml.model.Leader
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Leader
 
asXMLElement(Document) - Method in class ome.xml.model.LightEmittingDiode
 
asXMLElement(Document, Element) - Method in class ome.xml.model.LightEmittingDiode
 
asXMLElement(Document) - Method in class ome.xml.model.LightPath
 
asXMLElement(Document, Element) - Method in class ome.xml.model.LightPath
 
asXMLElement(Document, Element) - Method in class ome.xml.model.LightSource
 
asXMLElement(Document) - Method in class ome.xml.model.LightSourceSettings
 
asXMLElement(Document, Element) - Method in class ome.xml.model.LightSourceSettings
 
asXMLElement(Document) - Method in class ome.xml.model.Line
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Line
 
asXMLElement(Document) - Method in class ome.xml.model.ListAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ListAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.LongAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.LongAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.ManufacturerSpec
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ManufacturerSpec
 
asXMLElement(Document) - Method in class ome.xml.model.Mask
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Mask
 
asXMLElement(Document) - Method in class ome.xml.model.MetadataOnly
 
asXMLElement(Document, Element) - Method in class ome.xml.model.MetadataOnly
 
asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulation
 
asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulationRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulationRef
 
asXMLElement(Document) - Method in class ome.xml.model.Microscope
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Microscope
 
asXMLElement(Document) - Method in class ome.xml.model.NumericAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.NumericAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.Objective
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Objective
 
asXMLElement(Document) - Method in class ome.xml.model.ObjectiveSettings
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ObjectiveSettings
 
asXMLElement(Document) - Method in class ome.xml.model.OME
 
asXMLElement(Document, Element) - Method in class ome.xml.model.OME
 
asXMLElement(Document) - Method in interface ome.xml.model.OMEModelObject
Takes the entire object hierarchy and produces an XML DOM tree.
asXMLElement(Document) - Method in class ome.xml.model.Pixels
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Pixels
 
asXMLElement(Document) - Method in class ome.xml.model.Plane
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Plane
 
asXMLElement(Document) - Method in class ome.xml.model.Plate
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Plate
 
asXMLElement(Document) - Method in class ome.xml.model.PlateAcquisition
 
asXMLElement(Document, Element) - Method in class ome.xml.model.PlateAcquisition
 
asXMLElement(Document) - Method in class ome.xml.model.PlateRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.PlateRef
 
asXMLElement(Document) - Method in class ome.xml.model.Point
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Point
 
asXMLElement(Document) - Method in class ome.xml.model.Polygon
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Polygon
 
asXMLElement(Document) - Method in class ome.xml.model.Polyline
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Polyline
 
asXMLElement(Document) - Method in class ome.xml.model.Project
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Project
 
asXMLElement(Document) - Method in class ome.xml.model.ProjectRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ProjectRef
 
asXMLElement(Document) - Method in class ome.xml.model.Pump
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Pump
 
asXMLElement(Document) - Method in class ome.xml.model.Reagent
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Reagent
 
asXMLElement(Document) - Method in class ome.xml.model.ReagentRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ReagentRef
 
asXMLElement(Document) - Method in class ome.xml.model.Rectangle
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Rectangle
 
asXMLElement(Document) - Method in class ome.xml.model.Reference
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Reference
 
asXMLElement(Document) - Method in class ome.xml.model.Rights
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Rights
 
asXMLElement(Document) - Method in class ome.xml.model.ROI
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ROI
 
asXMLElement(Document) - Method in class ome.xml.model.ROIRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.ROIRef
 
asXMLElement(Document) - Method in class ome.xml.model.Screen
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Screen
 
asXMLElement(Document) - Method in class ome.xml.model.Settings
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Settings
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Shape
 
asXMLElement(Document) - Method in class ome.xml.model.StageLabel
 
asXMLElement(Document, Element) - Method in class ome.xml.model.StageLabel
 
asXMLElement(Document) - Method in class ome.xml.model.StructuredAnnotations
 
asXMLElement(Document, Element) - Method in class ome.xml.model.StructuredAnnotations
 
asXMLElement(Document) - Method in class ome.xml.model.TagAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.TagAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.TermAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.TermAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.TextAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.TextAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.TiffData
 
asXMLElement(Document, Element) - Method in class ome.xml.model.TiffData
 
asXMLElement(Document) - Method in class ome.xml.model.TimestampAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.TimestampAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.TransmittanceRange
 
asXMLElement(Document, Element) - Method in class ome.xml.model.TransmittanceRange
 
asXMLElement(Document) - Method in class ome.xml.model.TypeAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.TypeAnnotation
 
asXMLElement(Document) - Method in class ome.xml.model.Union
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Union
 
asXMLElement(Document) - Method in class ome.xml.model.UUID
 
asXMLElement(Document, Element) - Method in class ome.xml.model.UUID
 
asXMLElement(Document) - Method in class ome.xml.model.Well
 
asXMLElement(Document, Element) - Method in class ome.xml.model.Well
 
asXMLElement(Document) - Method in class ome.xml.model.WellSample
 
asXMLElement(Document, Element) - Method in class ome.xml.model.WellSample
 
asXMLElement(Document) - Method in class ome.xml.model.WellSampleRef
 
asXMLElement(Document, Element) - Method in class ome.xml.model.WellSampleRef
 
asXMLElement(Document) - Method in class ome.xml.model.XMLAnnotation
 
asXMLElement(Document, Element) - Method in class ome.xml.model.XMLAnnotation
 
ATTR_NAME - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
attrInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
AttrPtg - Class in loci.poi.hssf.record.formula
"Special Attributes" This seems to be a Misc Stuff and Junk record.
AttrPtg() - Constructor for class loci.poi.hssf.record.formula.AttrPtg
 
AttrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AttrPtg
 
authenticationCodes - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
AUTOMATIC - Static variable in class loci.poi.hssf.record.CalcModeRecord
automatically calculate formulas (1)
AUTOMATIC_EXCEPT_TABLES - Static variable in class loci.poi.hssf.record.CalcModeRecord
automatically calculate formulas except for tables (-1)
autoscale(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
Perform autoscaling on the given BufferedImage.
autoscale(BufferedImage, int, int) - Static method in class loci.formats.gui.AWTImageTools
Perform autoscaling on the given BufferedImage; map min to 0 and max to 255.
autoscale(byte[], int, int, int, boolean) - Static method in class loci.formats.ImageTools
Perform autoscaling on the given byte array; map min to 0 and max to 255.
autoscaleBox - Variable in class loci.plugins.in.MainDialog
 
autoSizeColumn(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Adjusts the column width to fit the contents.
autoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
 
autoUpdate - Variable in class loci.formats.cache.Cache
Whether the cache should automatically update when a parameter changes.
available() - Method in class loci.common.NIOInputStream
 
available() - Method in class loci.common.RandomAccessInputStream
 
available() - Method in class loci.poi.poifs.filesystem.DocumentInputStream
Returns the number of bytes that can be read (or skipped over) from this input stream without blocking by the next caller of a method for this input stream.
available() - Method in class loci.poi.util.BlockingInputStream
 
available() - Method in class ome.scifio.io.NIOInputStream
 
available() - Method in class ome.scifio.io.RandomAccessInputStream
 
AVI_MAGIC_STRING - Static variable in class loci.formats.in.AVIReader
 
AVIReader - Class in loci.formats.in
AVIReader is the file format reader for AVI files.
AVIReader() - Constructor for class loci.formats.in.AVIReader
Constructs a new AVI reader.
AVIWriter - Class in loci.formats.out
AVIWriter is the file format writer for AVI files.
AVIWriter() - Constructor for class loci.formats.out.AVIWriter
 
avoidUndeclaredNamespaces(String) - Static method in class loci.common.xml.XMLTools
Replaces NS:tag with NS_tag for undeclared namespaces
avoidUndeclaredNamespaces(String) - Static method in class ome.scifio.xml.XMLTools
Replaces NS:tag with NS_tag for undeclared namespaces
AWTImageTools - Class in loci.formats.gui
A utility class with convenience methods for manipulating images in BufferedImage form.
ax - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The horizontal coordinate of the image origin in the canvas system, on the reference grid.
AXIS_TYPE_AXIS_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
 
AXIS_TYPE_CATEGORY_OR_X_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
 
AXIS_TYPE_MAIN - Static variable in class loci.poi.hssf.record.AxisParentRecord
 
AXIS_TYPE_MAJOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
 
AXIS_TYPE_MINOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
 
AXIS_TYPE_SECONDARY - Static variable in class loci.poi.hssf.record.AxisParentRecord
 
AXIS_TYPE_SERIES_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
 
AXIS_TYPE_VALUE_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
 
AXIS_TYPE_WALLS_OR_FLOOR - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
 
AxisGuesser - Class in loci.formats
AxisGuesser guesses which blocks in a file pattern correspond to which dimensional axes (Z, T or C), potentially recommending an adjustment in dimension order within the files, depending on the confidence of each guess.
AxisGuesser(FilePattern, String, int, int, int, boolean) - Constructor for class loci.formats.AxisGuesser
Guesses dimensional axis assignments corresponding to the given file pattern, using the specified dimensional information from within each file as a guide.
AxisLineFormatRecord - Class in loci.poi.hssf.record
The axis line format record defines the axis type details.
AxisLineFormatRecord() - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord
 
AxisLineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord
Constructs a AxisLineFormat record and sets its fields appropriately.
AxisOptionsRecord - Class in loci.poi.hssf.record
The axis options record provides unit information and other various tidbits about the axis.
AxisOptionsRecord() - Constructor for class loci.poi.hssf.record.AxisOptionsRecord
 
AxisOptionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisOptionsRecord
Constructs a AxisOptions record and sets its fields appropriately.
AxisParentRecord - Class in loci.poi.hssf.record
The axis size and location NOTE: This source is automatically generated please do not modify this file.
AxisParentRecord() - Constructor for class loci.poi.hssf.record.AxisParentRecord
 
AxisParentRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisParentRecord
Constructs a AxisParent record and sets its fields appropriately.
AxisRecord - Class in loci.poi.hssf.record
The axis record defines the type of an axis.
AxisRecord() - Constructor for class loci.poi.hssf.record.AxisRecord
 
AxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisRecord
Constructs a Axis record and sets its fields appropriately.
axisTypes - Variable in class loci.formats.AxisGuesser
Guessed axis types.
AxisUsedRecord - Class in loci.poi.hssf.record
The number of axes used on a chart.
AxisUsedRecord() - Constructor for class loci.poi.hssf.record.AxisUsedRecord
 
AxisUsedRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisUsedRecord
Constructs a AxisUsed record and sets its fields appropriately.
ay - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The vertical coordinate of the image origin in the canvas system, on the reference grid.

B

ba - Variable in class mdbtools.libmdb.Holder
 
backend - Class in mdbtools.libmdb
 
backend() - Constructor for class mdbtools.libmdb.backend
 
backend_name - Variable in class mdbtools.libmdb.MdbFile
 
backend_name - Variable in class mdbtools.libmdb.MdbHandle
 
BACKGROUND_TABLE - Static variable in class loci.formats.in.LiFlimReader
 
backgroundColorIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
BackupRecord - Class in loci.poi.hssf.record
Title: Backup Record
BackupRecord() - Constructor for class loci.poi.hssf.record.BackupRecord
 
BackupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BackupRecord
Constructs a BackupRecord and sets its fields appropriately
BACKWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
 
baos - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
The ByteArrayOutputStream to store header data.
BarRecord - Class in loci.poi.hssf.record
The bar record is used to define a bar chart.
BarRecord() - Constructor for class loci.poi.hssf.record.BarRecord
 
BarRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BarRecord
Constructs a Bar record and sets its fields appropriately.
Base64Codec - Class in loci.formats.codec
Implements encoding (compress) and decoding (decompress) methods for Base64.
Base64Codec() - Constructor for class loci.formats.codec.Base64Codec
 
BaseCodec - Class in loci.formats.codec
BaseCodec contains default implementation and testing for classes implementing the Codec interface, and acts as a base class for any of the compression classes.
BaseCodec() - Constructor for class loci.formats.codec.BaseCodec
 
BaseHandler - Class in loci.common.xml
A legacy delegator class for ome.scifio.xml.BaseHandler.
BaseHandler() - Constructor for class loci.common.xml.BaseHandler
 
BaseHandler - Class in ome.scifio.xml
Top-level SAX handler.
BaseHandler() - Constructor for class ome.scifio.xml.BaseHandler
 
BaselineTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff
A class representing the set of tags found in the baseline TIFF specification as well as some common additional tags.
BaseMetadata - Interface in loci.formats.meta
A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.
basename - Variable in class loci.formats.in.ZeissTIFFHandler.Plane
 
BaseTiffReader - Class in loci.formats.in
BaseTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
BaseTiffReader(String, String) - Constructor for class loci.formats.in.BaseTiffReader
Constructs a new BaseTiffReader.
BaseTiffReader(String, String[]) - Constructor for class loci.formats.in.BaseTiffReader
Constructs a new BaseTiffReader.
BaseZeissReader - Class in loci.formats.in
BaseZeissReader contains common functionality required by readers for Zeiss AxioVision formats.
BaseZeissReader(String, String) - Constructor for class loci.formats.in.BaseZeissReader
Constructs a new ZeissZVI reader.
BaseZeissReader(String, String[]) - Constructor for class loci.formats.in.BaseZeissReader
Constructs a new ZeissZVI reader.
BaseZeissReader.Context - Enum in loci.formats.in
 
BaseZeissReader.Tag - Class in loci.formats.in
Content of a single tag from a Tags block.
BaseZeissReader.Tag(int, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag
Constructor.
BaseZeissReader.Tag(int, String, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag
Constructor.
BasicAnnotation - Class in ome.xml.model
 
BasicAnnotation() - Constructor for class ome.xml.model.BasicAnnotation
Default constructor.
BasicAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BasicAnnotation
Constructs BasicAnnotation recursively from an XML DOM tree.
BasicAnnotation(BasicAnnotation) - Constructor for class ome.xml.model.BasicAnnotation
Copy constructor.
BATBlock - Class in loci.poi.poifs.storage
A block of block allocation table entries.
BATManaged - Interface in loci.poi.poifs.filesystem
This interface defines behaviors for objects managed by the Block Allocation Table (BAT).
BDReader - Class in loci.formats.in
BDReader is the file format reader for BD Pathway datasets.
BDReader() - Constructor for class loci.formats.in.BDReader
Constructs a new ScanR reader.
BEBufferedRandomAccessFile - Class in jj2000.j2k.io
This class defines a Buffered Random Access File, where all I/O is considered to be big-endian, and extends the BufferedRandomAccessFile class.
BEBufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
Constructor.
BEBufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
Constructor.
BEBufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
Constructor.
BEBufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
Constructor.
beforeRecordSerialize(int, short, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener
Fired before a given escher record is serialized.
beforeRecordSerialize(int, short, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener
 
beginDecoding() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
This routine is called prior to a sequence of calls to the decode method, in order to allow any necessary tables or other structures to be initialized based on metadata values.
beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
Invokes the superclass method and then sets instance variables on the basis of the metadata set on this decompressor.
beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
 
beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
 
BeginRecord - Class in loci.poi.hssf.record
The begin record defines the start of a block of records for a (grpahing data object.
BeginRecord() - Constructor for class loci.poi.hssf.record.BeginRecord
 
BeginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BeginRecord
Constructs a BeginRecord record and sets its fields appropriately.
BETA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
The value of the second lifting step coefficient
BETA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
The value of the second lifting step coefficient
BF - Class in loci.plugins
Miscellaneous LOCI plugins utility methods.
BFVirtualStack - Class in loci.plugins.util
Subclass of VirtualStack that uses Bio-Formats to read planes on demand.
BFVirtualStack(String, IFormatReader, boolean, boolean, boolean) - Constructor for class loci.plugins.util.BFVirtualStack
 
bgrToRgb(byte[], boolean, int, int) - Static method in class loci.formats.ImageTools
 
BH_HEADER_CHKSUM - Static variable in class loci.formats.in.SDTInfo
 
BH_HEADER_NOT_VALID - Static variable in class loci.formats.in.SDTInfo
 
BH_HEADER_VALID - Static variable in class loci.formats.in.SDTInfo
 
BI_BITFIELDS - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
BI_JPEG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
BI_PNG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
BI_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
BI_RLE4 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
BI_RLE8 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
BiffViewer - Class in loci.poi.hssf.dev
Utillity for reading in BIFF8 records and displaying data from them.
BiffViewer(String[]) - Constructor for class loci.poi.hssf.dev.BiffViewer
Creates new BiffViewer
BIFormatReader - Class in loci.formats.in
BIFormatReader is the superclass for file format readers that use java.awt.image.BufferedImage as the native data type.
BIFormatReader(String, String) - Constructor for class loci.formats.in.BIFormatReader
Constructs a new BIFormatReader.
BIFormatReader(String, String[]) - Constructor for class loci.formats.in.BIFormatReader
Constructs a new BIFormatReader.
BIG - Static variable in class loci.formats.tiff.TiffConstants
 
BIG_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType
Identifier for big-endian byte ordering (i.e.
BIG_SPOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
BIG_SPOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Large spots
BIG_TIFF - Static variable in class loci.formats.tiff.IFD
 
BIG_TIFF_BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants
The number of bytes in each IFD entry of a BigTIFF file.
BIG_TIFF_MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants
 
BinaryDataInput - Interface in jj2000.j2k.io
This interface defines the input of binary data from streams and/or files.
BinaryDataOutput - Interface in jj2000.j2k.io
This interface defines the output of binary data to streams and/or files.
BinaryFile - Class in ome.xml.model
 
BinaryFile() - Constructor for class ome.xml.model.BinaryFile
Default constructor.
BinaryFile(Element, OMEModel) - Constructor for class ome.xml.model.BinaryFile
Constructs BinaryFile recursively from an XML DOM tree.
BinaryFile(BinaryFile) - Constructor for class ome.xml.model.BinaryFile
Copy constructor.
BinaryOnly - Class in ome.xml.model
 
BinaryOnly() - Constructor for class ome.xml.model.BinaryOnly
Default constructor.
BinaryOnly(Element, OMEModel) - Constructor for class ome.xml.model.BinaryOnly
Constructs BinaryOnly recursively from an XML DOM tree.
BinaryOnly(BinaryOnly) - Constructor for class ome.xml.model.BinaryOnly
Copy constructor.
BinaryTree - Class in loci.poi.util
Red-Black tree-based implementation of Map.
BinaryTree() - Constructor for class loci.poi.util.BinaryTree
Construct a new BinaryTree
BinaryTree(Map) - Constructor for class loci.poi.util.BinaryTree
Constructs a new BinaryTree from an existing Map, with keys and values sorted
bind_ptr - Variable in class mdbtools.libmdb.MdbColumn
 
BinData - Class in ome.xml.model
 
BinData() - Constructor for class ome.xml.model.BinData
Default constructor.
BinData(Element, OMEModel) - Constructor for class ome.xml.model.BinData
Constructs BinData recursively from an XML DOM tree.
BinData(BinData) - Constructor for class ome.xml.model.BinData
Copy constructor.
Binning - Enum in ome.xml.model.enums
 
BinningEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for Binning.
BinningEnumHandler() - Constructor for class ome.xml.model.enums.handlers.BinningEnumHandler
 
BioFormatsExtensionPrinter - Class in loci.formats.tools
This class is used to generate a text file containing all of the image file extensions supported by Bio-Formats.
BioFormatsExtensionPrinter() - Constructor for class loci.formats.tools.BioFormatsExtensionPrinter
 
BioRadGelReader - Class in loci.formats.in
BioRadGelReader is the file format reader for Bio-Rad gel files.
BioRadGelReader() - Constructor for class loci.formats.in.BioRadGelReader
Constructs a new Bio-Rad gel reader.
BioRadReader - Class in loci.formats.in
BioRadReader is the file format reader for Bio-Rad PIC files.
BioRadReader() - Constructor for class loci.formats.in.BioRadReader
Constructs a new BioRadReader.
BioRadSCNReader - Class in loci.formats.in
BioRadSCNReader is the reader for Bio-Rad .scn files Source code: Trac, Gitweb
BioRadSCNReader() - Constructor for class loci.formats.in.BioRadSCNReader
Constructs a new Bio-Rad .scn reader.
BitBuffer - Class in loci.formats.codec
A class for reading arbitrary numbers of bits from a byte array.
BitBuffer(byte[]) - Constructor for class loci.formats.codec.BitBuffer
Default constructor.
BitField - Class in loci.poi.util
Manage operations dealing with bit-mapped fields.
BitField(int) - Constructor for class loci.poi.util.BitField
Create a BitField instance
BitFieldFactory - Class in loci.poi.util
Returns immutable Btfield instances.
BitFieldFactory() - Constructor for class loci.poi.util.BitFieldFactory
 
BitFile - Class in com.sun.media.imageioimpl.common
Came from GIFEncoder initially.
BitFile(ImageOutputStream, boolean) - Constructor for class com.sun.media.imageioimpl.common.BitFile
 
BitOutputBuffer - Class in jj2000.j2k.codestream.writer
This class implements a buffer for writing bits, with the required bit stuffing policy for the packet headers.
BitOutputBuffer() - Constructor for class jj2000.j2k.codestream.writer.BitOutputBuffer
Creates a new BitOutputBuffer width a buffer of length 'SZ_INIT'.
bits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Output bit buffer.
BITS_PER_COMPONENT_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
BITS_PER_SAMPLE - Static variable in class loci.formats.tiff.IFD
 
BitsPerComponentBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is defined to represent a Bits Per Component Box of JPEG JP2 file format.
BitsPerComponentBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox
Counstructs a BitsPerComponentBox from the provided byte array containing the bit depths of each color component.
BitsPerComponentBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox
Constructs a BitsPerComponentBox based on the provide org.w3c.dom.Node.
bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
bitsPerPixel - Variable in class loci.formats.CoreMetadata
Number of valid bits per pixel.
bitsPerSample - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The value of the BitsPerSample tag.
bitsPerSample - Variable in class loci.formats.codec.CodecOptions
Number of bits per channel.
BitstreamReaderAgent - Class in jj2000.j2k.codestream.reader
This is the generic interface for bit stream reader agents.
BitstreamReaderAgent(HeaderDecoder, DecoderSpecs) - Constructor for class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Initializes members of this class.
BitWriter - Class in loci.formats.codec
A class for writing arbitrary numbers of bits to a byte array.
BitWriter() - Constructor for class loci.formats.codec.BitWriter
Constructs a new bit writer.
BitWriter(int) - Constructor for class loci.formats.codec.BitWriter
Constructs a new bit writer with the given initial buffer size.
BLACK - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
The CCITT numerical definition of black.
blankImage(int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Creates a blank image with the given dimensions and transfer type.
BlankRecord - Class in loci.poi.hssf.record
Title: Blank cell record
BlankRecord() - Constructor for class loci.poi.hssf.record.BlankRecord
Creates a new instance of BlankRecord
BlankRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BlankRecord
Constructs a BlankRecord and sets its fields appropriately
BLIP__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__BLIPTODISPLAY - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__BRIGHTNESSSETTING - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__CONTRASTSETTING - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__CROPFROMBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__CROPFROMLEFT - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__CROPFROMRIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__CROPFROMTOP - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__DOUBLEMOD - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__GAMMA - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__NOHITTESTPICTURE - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__PICTUREACTIVE - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__PICTUREBILEVEL - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__PICTUREFILLMOD - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__PICTUREGRAY - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__PICTUREID - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__PICTURELINE - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__PRINTBLIP - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__PRINTBLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__PRINTFLAGS - Static variable in class loci.poi.ddf.EscherProperties
 
BLIP__TRANSPARENTCOLOR - Static variable in class loci.poi.ddf.EscherProperties
 
BlkImgDataSrc - Interface in jj2000.j2k.image
This interface defines the methods to transfer image data in blocks, without following any particular order (random access).
BLOCK_END - Static variable in class loci.formats.FilePatternBlock
 
BLOCK_SIZE - Static variable in class loci.poi.hssf.record.DBCellRecord
 
BLOCK_START - Static variable in class loci.formats.FilePatternBlock
 
BlockAllocationTableReader - Class in loci.poi.poifs.storage
This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.
BlockAllocationTableReader(int, int[], int, int, BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader
create a BlockAllocationTableReader for an existing filesystem.
BlockAllocationTableWriter - Class in loci.poi.poifs.storage
This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.
BlockAllocationTableWriter() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableWriter
create a BlockAllocationTableWriter
BlockingInputStream - Class in loci.poi.util
Implementation of a BlockingInputStream to provide data to RawDataBlock that expects data in 512 byte chunks.
BlockingInputStream(InputStream) - Constructor for class loci.poi.util.BlockingInputStream
 
blockLength - Variable in class loci.formats.in.SDTInfo
reserved2 now contains block (set) length.
BlockList - Interface in loci.poi.poifs.storage
Interface for lists of blocks that are mapped by block allocation tables
blockNo - Variable in class loci.formats.in.SDTInfo
Number of the block in the file.
blockType - Variable in class loci.formats.in.SDTInfo
See blockType defines below.
BlockWritable - Interface in loci.poi.poifs.storage
An interface for persisting block storage of POIFS components.
blue - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
blue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
blueX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
blueY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
blueZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
BMP_MAGIC_STRING - Static variable in class loci.formats.in.BMPReader
 
BMPConstants - Interface in com.sun.media.imageioimpl.plugins.bmp
 
BMPImageReader - Class in com.sun.media.imageioimpl.plugins.bmp
This class is the Java Image IO plugin reader for BMP images.
BMPImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
Constructs BMPImageReader from the provided ImageReaderSpi.
BMPImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.bmp
 
BMPImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
 
BMPImageWriteParam - Class in com.sun.media.imageio.plugins.bmp
A subclass of ImageWriteParam for encoding images in the BMP format.
BMPImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
Constructs a BMPImageWriteParam set to use a given Locale and with default values for all parameters.
BMPImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
Constructs an BMPImageWriteParam object with default values for all parameters and a null Locale.
BMPImageWriter - Class in com.sun.media.imageioimpl.plugins.bmp
The Java Image IO plugin writer for encoding a binary RenderedImage into a BMP format.
BMPImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
Constructs BMPImageWriter based on the provided ImageWriterSpi.
BMPImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.bmp
 
BMPImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
 
BMPMetadata - Class in com.sun.media.imageioimpl.plugins.bmp
 
BMPMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
BMPMetadata(IIOMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
BMPMetadataFormat - Class in com.sun.media.imageioimpl.plugins.bmp
 
BMPMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.bmp
 
BMPMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources
 
BMPReader - Class in loci.formats.in
BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
BMPReader() - Constructor for class loci.formats.in.BMPReader
Constructs a new BMP reader.
bmpVersion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
bms - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
By-pass mode specifications
BOFRecord - Class in loci.poi.hssf.record
Title: Beginning Of File
BOFRecord() - Constructor for class loci.poi.hssf.record.BOFRecord
Constructs an empty BOFRecord with no fields set.
BOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BOFRecord
Constructs a BOFRecord and sets its fields appropriately
BogusColorSpace - Class in com.sun.media.imageioimpl.common
A dummy ColorSpace to enable ColorModel for image data which do not have an innate color representation.
BogusColorSpace(int) - Constructor for class com.sun.media.imageioimpl.common.BogusColorSpace
Constructs a bogus ColorSpace.
BOLDWEIGHT_BOLD - Static variable in class loci.poi.hssf.usermodel.HSSFFont
Bold boldness (bold)
BOLDWEIGHT_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont
Normal boldness (not bold)
book - Variable in class loci.poi.hssf.usermodel.HSSFSheet
 
BookBoolRecord - Class in loci.poi.hssf.record
Title: Save External Links record (BookBool)
BookBoolRecord() - Constructor for class loci.poi.hssf.record.BookBoolRecord
 
BookBoolRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BookBoolRecord
Constructs a BookBoolRecord and sets its fields appropriately
BooleanAnnotation - Class in ome.xml.model
 
BooleanAnnotation() - Constructor for class ome.xml.model.BooleanAnnotation
Default constructor.
BooleanAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BooleanAnnotation
Constructs BooleanAnnotation recursively from an XML DOM tree.
BooleanAnnotation(BooleanAnnotation) - Constructor for class ome.xml.model.BooleanAnnotation
Copy constructor.
BooleanOption - Class in loci.plugins.prefs
A boolean option for one of the LOCI plugins.
BooleanOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.BooleanOption
Constructs a boolean option with the parameters from the given map.
BooleanOption(String, boolean, String, String, boolean) - Constructor for class loci.plugins.prefs.BooleanOption
Constructs a boolean option with the given parameters.
BoolErrRecord - Class in loci.poi.hssf.record
Creates new BoolErrRecord.
BoolErrRecord() - Constructor for class loci.poi.hssf.record.BoolErrRecord
Creates new BoolErrRecord
BoolErrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoolErrRecord
Constructs a BoolErr record and sets its fields appropriately.
BoolPtg - Class in loci.poi.hssf.record.formula
Boolean (boolean) Stores a (java) boolean value in a formula.
BoolPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.BoolPtg
 
BoolPtg(String) - Constructor for class loci.poi.hssf.record.formula.BoolPtg
 
BORDER - Static variable in class loci.plugins.shortcut.ShortcutPanel
Number of pixels for window border.
BORDER_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
dash-dot border
BORDER_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
dash-dot-dot border
BORDER_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
dash border
BORDER_DOTTED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
hair-line border
BORDER_DOUBLE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
double-line border
BORDER_HAIR - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
dot border
BORDER_MEDIUM - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Medium border
BORDER_MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
medium dash-dot border
BORDER_MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
medium dash-dot-dot border
BORDER_MEDIUM_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Medium dashed border
BORDER_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
No border
BORDER_SLANTED_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
slanted dash-dot border
BORDER_THICK - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Thick border
BORDER_THIN - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Thin border
BORDER_TYPE_REGULAR - Static variable in class loci.poi.hssf.record.FrameRecord
 
BORDER_TYPE_SHADOW - Static variable in class loci.poi.hssf.record.FrameRecord
 
bordL - Variable in class loci.formats.in.SDTInfo
 
bordU - Variable in class loci.formats.in.SDTInfo
 
BottomMargin - Static variable in class loci.poi.hssf.model.Sheet
 
BottomMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet
 
BottomMarginRecord - Class in loci.poi.hssf.record
Record for the bottom margin.
BottomMarginRecord() - Constructor for class loci.poi.hssf.record.BottomMarginRecord
 
BottomMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BottomMarginRecord
Constructs a BottomMargin record and sets its fields appropriately.
BoundSheetRecord - Class in loci.poi.hssf.record
Title: Bound Sheet Record (aka BundleSheet)
BoundSheetRecord() - Constructor for class loci.poi.hssf.record.BoundSheetRecord
 
BoundSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoundSheetRecord
Constructs a BoundSheetRecord and sets its fields appropriately
boundsheets - Variable in class loci.poi.hssf.model.Workbook
holds the "boundsheet" records (aka bundlesheet) so that they can have their reference to their "BOF" marker
Box - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is defined to create the box of JP2 file format.
Box(int, int, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Constructs a Box instance using the provided the box type and the box content in byte array format.
Box(int, int, long, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Constructs a Box instance using the provided the box type, the box extra length, and the box content in byte array format.
Box(ImageInputStream, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Constructs a Box instance from the provided ImageInputStream at the specified position.
Box(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Constructs a Box from an "unknown" Node.
BOX_SIZE - Static variable in class loci.formats.in.FakeReader
 
bpp - Variable in class loci.formats.in.BaseZeissReader
Number of bytes per pixel.
BRICKS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
BRICKS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Brick-like layout
BRIGHTNESS_VALUE - Static variable in class loci.formats.tiff.IFD
 
BrowserOptionsWindow - Class in loci.plugins.util
Extension of JFrame that allows the user to adjust caching settings.
BrowserOptionsWindow(String, Cache, String[]) - Constructor for class loci.plugins.util.BrowserOptionsWindow
 
BrukerReader - Class in loci.formats.in
BrukerReader is the file format reader for Bruker MRI files.
BrukerReader() - Constructor for class loci.formats.in.BrukerReader
Constructs a new Bruker reader.
BSTORE_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
 
BT_DIB - Static variable in class loci.poi.ddf.EscherBSERecord
 
BT_EMF - Static variable in class loci.poi.ddf.EscherBSERecord
 
BT_ERROR - Static variable in class loci.poi.ddf.EscherBSERecord
 
BT_JPEG - Static variable in class loci.poi.ddf.EscherBSERecord
 
BT_PICT - Static variable in class loci.poi.ddf.EscherBSERecord
 
BT_PNG - Static variable in class loci.poi.ddf.EscherBSERecord
 
BT_UNKNOWN - Static variable in class loci.poi.ddf.EscherBSERecord
 
BT_WMF - Static variable in class loci.poi.ddf.EscherBSERecord
 
BUBBLE_SERIES_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord
 
BUBBLE_SERIES_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord
 
BUBBLE_SERIES_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord
 
BUBBLE_SERIES_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord
 
BUF_DEF_LEN - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
The default initial buffer size
BUF_INC - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
The buffer increase size
buffer - Variable in class ome.scifio.io.ByteArrayHandle
Backing ByteBuffer.
buffer - Variable in class ome.scifio.io.NIOFileHandle
The buffer itself.
BufferedImageReader - Class in loci.formats.gui
A reader wrapper for reading image planes as BufferedImage objects.
BufferedImageReader() - Constructor for class loci.formats.gui.BufferedImageReader
Constructs a BufferedImageReader around a new image reader.
BufferedImageReader(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageReader
Constructs a BufferedImageReader with the given reader.
BufferedImageSource - Class in loci.formats.gui
Retrieves BufferedImages from a data source using Bio-Formats.
BufferedImageSource(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageSource
 
BufferedImageWriter - Class in loci.formats.gui
A writer wrapper for writing image planes from BufferedImage objects.
BufferedImageWriter() - Constructor for class loci.formats.gui.BufferedImageWriter
Constructs a BufferedImageWriter around a new image writer.
BufferedImageWriter(IFormatWriter) - Constructor for class loci.formats.gui.BufferedImageWriter
Constructs a BufferedImageWriter with the given writer.
BufferedRandomAccessFile - Class in jj2000.j2k.io
This class defines a Buffered Random Access File.
BufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
Constructor.
BufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
Constructor.
BufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
Constructor.
BufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
Constructor.
bufferSize - Variable in class ome.scifio.io.NIOFileHandle
The buffer size.
bufferStartPosition - Variable in class ome.scifio.io.NIOFileHandle
The absolute position of the start of the buffer.
bugaddr - Static variable in class jj2000.j2k.JJ2KInfo
The bug reporting e-mail address
BUILD - Static variable in class loci.poi.hssf.record.BOFRecord
suggested default 0x10d3
BUILD_YEAR - Static variable in class loci.poi.hssf.record.BOFRecord
suggested default 0x07CC (1996)
buildExtensions() - Method in class loci.plugins.macro.MacroFunctions
Builds the list of extensions, using reflection, from public methods of this class.
buildFileChooser(IFormatHandler) - Static method in class loci.formats.gui.GUITools
Constructs a file chooser for the given file format handler.
buildFileChooser(IFormatHandler, boolean) - Static method in class loci.formats.gui.GUITools
Constructs a file chooser for the given file format handler.
buildFileChooser(FileFilter[]) - Static method in class loci.formats.gui.GUITools
Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter.
buildFileChooser(FileFilter[], boolean) - Static method in class loci.formats.gui.GUITools
Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter, if one is not already specified.
buildFileFilters(IFormatHandler) - Static method in class loci.formats.gui.GUITools
Constructs a list of file filters for the given file format handler.
buildFontCharactersProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
 
buildFontHeightProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
 
buildFontWidthsProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
 
buildFunction(Function, Object) - Method in class mdbtools.dbengine.Tests
 
buildFunction(Aggregate, Object) - Method in class mdbtools.dbengine.Tests
 
buildPalette() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
BUILTIN_AUTO_ACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BUILTIN_AUTO_CLOSE - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BUILTIN_AUTO_DEACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BUILTIN_AUTO_OPEN - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BUILTIN_CONSOLIDATE_AREA - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BUILTIN_CRITERIA - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BUILTIN_DATA_FORM - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BUILTIN_DATABASE - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BUILTIN_PRINT_AREA - Static variable in class loci.poi.hssf.record.NameRecord
 
BUILTIN_PRINT_TITLE - Static variable in class loci.poi.hssf.record.NameRecord
 
BUILTIN_RECORDER - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BUILTIN_SHEET_TITLE - Static variable in class loci.poi.hssf.record.NameRecord
Included for completeness sake, not implemented
BurleighReader - Class in loci.formats.in
BurleighReader is the file format reader for Burleigh .img files.
BurleighReader() - Constructor for class loci.formats.in.BurleighReader
Constructs a new Burleigh reader.
BYTE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
 
ByteArrayHandle - Class in loci.common
Legacy delegator class for ome.scifio.io.ByteArrayHandle.
ByteArrayHandle(byte[]) - Constructor for class loci.common.ByteArrayHandle
Creates a random access byte stream to read from, and write to, the bytes specified by the byte[] argument.
ByteArrayHandle(ByteBuffer) - Constructor for class loci.common.ByteArrayHandle
 
ByteArrayHandle(int) - Constructor for class loci.common.ByteArrayHandle
Creates a random access byte stream to read from, and write to.
ByteArrayHandle() - Constructor for class loci.common.ByteArrayHandle
Creates a random access byte stream to write to a byte array.
ByteArrayHandle - Class in ome.scifio.io
A wrapper for a byte array that implements the IRandomAccess interface.
ByteArrayHandle(byte[]) - Constructor for class ome.scifio.io.ByteArrayHandle
Creates a random access byte stream to read from, and write to, the bytes specified by the byte[] argument.
ByteArrayHandle(ByteBuffer) - Constructor for class ome.scifio.io.ByteArrayHandle
 
ByteArrayHandle(int) - Constructor for class ome.scifio.io.ByteArrayHandle
Creates a random access byte stream to read from, and write to.
ByteArrayHandle() - Constructor for class ome.scifio.io.ByteArrayHandle
Creates a random access byte stream to write to a byte array.
byteArraySet(byte[], byte) - Static method in class jj2000.j2k.util.ArrayUtil
Reinitializes a byte array to the given value in an optimized way.
ByteArraySource - Class in loci.formats.cache
Retrieves byte arrays from a data source (e.g., a file) using Bio-Formats.
ByteArraySource(IFormatReader) - Constructor for class loci.formats.cache.ByteArraySource
Constructs a byte array source from the given Bio-Formats reader.
ByteArraySource(String) - Constructor for class loci.formats.cache.ByteArraySource
Constructs a byte array source that draws from the given file.
byteBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
Buffer of bytes containing the part of the file that is currently being accessed
byteBufferChanged - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
Boolean keeping track of whether the byte buffer has been changed since it was read.
byteBufferProvider - Variable in class ome.scifio.io.NIOFileHandle
Provider class for NIO byte buffers, allocated or memory mapped.
byteCount - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The number of bytes of data from the source ImageInputStream to be decompressed.
ByteField - Class in loci.poi.util
representation of a byte (8-bit) field at a fixed location within a byte array
ByteField(int) - Constructor for class loci.poi.util.ByteField
construct the ByteField with its offset into its containing byte array and a default value of 0
ByteField(int, byte) - Constructor for class loci.poi.util.ByteField
construct the ByteField with its offset into its containing byte array and initialize its value
ByteField(int, byte[]) - Constructor for class loci.poi.util.ByteField
Construct the ByteField with its offset into its containing byte array and initialize its value from its byte array
ByteField(int, byte, byte[]) - Constructor for class loci.poi.util.ByteField
construct the ByteField with its offset into its containing byte array, initialize its value, and write its value to its byte array
ByteInputBuffer - Class in jj2000.j2k.entropy.decoder
This class provides a byte input facility from byte buffers.
ByteInputBuffer(byte[]) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer
Creates a new byte array input stream that reads data from the specified byte array.
ByteInputBuffer(byte[], int, int) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer
Creates a new byte array input stream that reads data from the specified byte array.
byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
 
byteOrder - Variable in class loci.poi.hpsf.PropertySet
Specifies this PropertySet's byte order.
byteOrdering - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
 
ByteOutputBuffer - Class in jj2000.j2k.entropy.encoder
This class provides a buffering output stream similar to ByteArrayOutputStream, with some additional methods.
ByteOutputBuffer() - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer
Creates a new byte array output stream.
ByteOutputBuffer(int) - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer
Creates a new byte array output stream, with a buffer capacity of the specified size, in bytes.
bytes - Variable in class loci.formats.tiff.TiffSaver
Output bytes.
bytes - Variable in class loci.poi.hpsf.ClassID
The bytes making out the class ID in correct order, i.e.
BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants
The number of bytes in each IFD entry.
bytesToDouble(byte[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a double.
bytesToDouble(byte[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 8 bytes of a byte array beyond the given offset to a double.
bytesToDouble(byte[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 8 bytes of a byte array to a double.
bytesToDouble(short[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a double.
bytesToDouble(short[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 8 bytes of a byte array beyond the given offset to a double.
bytesToDouble(short[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 8 bytes of a byte array to a double.
bytesToDouble(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a double.
bytesToDouble(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 8 bytes of a byte array beyond the given offset to a double.
bytesToDouble(byte[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 8 bytes of a byte array to a double.
bytesToDouble(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a double.
bytesToDouble(short[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 8 bytes of a byte array beyond the given offset to a double.
bytesToDouble(short[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 8 bytes of a byte array to a double.
bytesToFloat(byte[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a float.
bytesToFloat(byte[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 4 bytes of a byte array beyond a given offset to a float.
bytesToFloat(byte[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 4 bytes of a byte array to a float.
bytesToFloat(short[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array beyond a given offset to a float.
bytesToFloat(short[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 4 bytes of a byte array beyond a given offset to a float.
bytesToFloat(short[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 4 bytes of a byte array to a float.
bytesToFloat(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a float.
bytesToFloat(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 4 bytes of a byte array beyond a given offset to a float.
bytesToFloat(byte[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 4 bytes of a byte array to a float.
bytesToFloat(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array beyond a given offset to a float.
bytesToFloat(short[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 4 bytes of a byte array beyond a given offset to a float.
bytesToFloat(short[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 4 bytes of a byte array to a float.
bytesToHex(byte[]) - Static method in class loci.common.DataTools
Translates the given byte array into a String of hexadecimal digits.
bytesToHex(byte[]) - Static method in class ome.scifio.common.DataTools
Translates the given byte array into a String of hexadecimal digits.
bytesToInt(byte[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to an int.
bytesToInt(byte[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 4 bytes of a byte array beyond the given offset to an int.
bytesToInt(byte[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 4 bytes of a byte array to an int.
bytesToInt(short[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to an int.
bytesToInt(short[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 4 bytes of a byte array beyond the given offset to an int.
bytesToInt(short[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 4 bytes of a byte array to an int.
bytesToInt(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to an int.
bytesToInt(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 4 bytes of a byte array beyond the given offset to an int.
bytesToInt(byte[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 4 bytes of a byte array to an int.
bytesToInt(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to an int.
bytesToInt(short[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 4 bytes of a byte array beyond the given offset to an int.
bytesToInt(short[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 4 bytes of a byte array to an int.
bytesToLong(byte[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a long.
bytesToLong(byte[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 8 bytes of a byte array beyond the given offset to a long.
bytesToLong(byte[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 8 bytes of a byte array to a long.
bytesToLong(short[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a long.
bytesToLong(short[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 8 bytes of a byte array beyond the given offset to a long.
bytesToLong(short[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 8 bytes of a byte array to a long.
bytesToLong(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a long.
bytesToLong(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 8 bytes of a byte array beyond the given offset to a long.
bytesToLong(byte[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 8 bytes of a byte array to a long.
bytesToLong(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a long.
bytesToLong(short[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 8 bytes of a byte array beyond the given offset to a long.
bytesToLong(short[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 8 bytes of a byte array to a long.
bytesToShort(byte[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a short.
bytesToShort(byte[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 2 bytes of a byte array beyond the given offset to a short.
bytesToShort(byte[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 2 bytes of a byte array to a short.
bytesToShort(short[], int, int, boolean) - Static method in class loci.common.DataTools
Translates up to the first len bytes of a byte array byond the given offset to a short.
bytesToShort(short[], int, boolean) - Static method in class loci.common.DataTools
Translates up to the first 2 bytes of a byte array byond the given offset to a short.
bytesToShort(short[], boolean) - Static method in class loci.common.DataTools
Translates up to the first 2 bytes of a byte array to a short.
bytesToShort(byte[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array beyond the given offset to a short.
bytesToShort(byte[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 2 bytes of a byte array beyond the given offset to a short.
bytesToShort(byte[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 2 bytes of a byte array to a short.
bytesToShort(short[], int, int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first len bytes of a byte array byond the given offset to a short.
bytesToShort(short[], int, boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 2 bytes of a byte array byond the given offset to a short.
bytesToShort(short[], boolean) - Static method in class ome.scifio.common.DataTools
Translates up to the first 2 bytes of a byte array to a short.
byteTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
 
byteValue() - Method in class loci.formats.tiff.TiffRational
Returns the value of the specified number as a byte.
ByteVector - Class in loci.formats.codec
A growable array of bytes.
ByteVector() - Constructor for class loci.formats.codec.ByteVector
 
ByteVector(int) - Constructor for class loci.formats.codec.ByteVector
 
ByteVector(byte[]) - Constructor for class loci.formats.codec.ByteVector
 
BZip2Handle - Class in loci.common
Legacy delegator class for ome.scifio.io.BZip2Handle.
BZip2Handle(String) - Constructor for class loci.common.BZip2Handle
Construct a new BZip2Handle corresponding to the given file.
BZip2Handle - Class in ome.scifio.io
StreamHandle implementation for reading from BZip2-compressed files or byte arrays.
BZip2Handle(String) - Constructor for class ome.scifio.io.BZip2Handle
Construct a new BZip2Handle corresponding to the given file.

C

C - Static variable in class loci.formats.AxisGuesser
Prefix endings indicating channel dimension.
c - Variable in class loci.formats.tools.AmiraParameters
 
C01_MAGIC_BYTES - Static variable in class loci.formats.in.CellomicsReader
 
C_AXIS - Static variable in class loci.formats.AxisGuesser
Axis type for channels.
C_KEY - Static variable in class loci.formats.in.LiFlimReader
 
C_STRING - Static variable in class loci.formats.in.SDTInfo
 
Cache - Class in loci.formats.cache
Cache provides a means of managing subsets of large collections of image planes in memory.
Cache(ICacheStrategy, ICacheSource, boolean) - Constructor for class loci.formats.cache.Cache
Constructs an object cache with the given cache strategy and source.
cache - Variable in class loci.formats.cache.Cache
Master array containing cached objects.
cache - Variable in class loci.plugins.util.BFVirtualStack
 
CacheComponent - Class in loci.formats.gui
GUI component for managing a cache.
CacheComponent(Cache, String[]) - Constructor for class loci.formats.gui.CacheComponent
Creates a cache GUI component.
CacheComponent(Cache, String[], String) - Constructor for class loci.formats.gui.CacheComponent
Creates a cache GUI component with the ability to change between the various source types (mainly for debugging purposes).
CacheConsole - Class in loci.formats.tools
CacheConsole provides an interactive interpreter for testing the Bio-Formats caching implementation.
cacheDirectoryListings(boolean) - Static method in class loci.common.Location
Turn cacheing of directory listings on or off.
cacheDirectoryListings(boolean) - Static method in class ome.scifio.io.Location
Turn cacheing of directory listings on or off.
CacheEvent - Class in loci.formats.cache
A event indicating a cache update.
CacheEvent(Object, int) - Constructor for class loci.formats.cache.CacheEvent
Constructs a cache event.
CacheEvent(Object, int, int) - Constructor for class loci.formats.cache.CacheEvent
Constructs a cache event.
CacheException - Exception in loci.formats.cache
CacheException is the exception thrown when something goes wrong performing a cache operation.
CacheException() - Constructor for exception loci.formats.cache.CacheException
 
CacheException(String) - Constructor for exception loci.formats.cache.CacheException
 
CacheException(String, Throwable) - Constructor for exception loci.formats.cache.CacheException
 
CacheException(Throwable) - Constructor for exception loci.formats.cache.CacheException
 
CacheIndicator - Class in loci.formats.gui
Indicator GUI component showing which planes are currently in the cache for a given dimensional axis at a particular dimensional position.
CacheIndicator(Cache, int) - Constructor for class loci.formats.gui.CacheIndicator
Creates a new cache indicator for the given cache.
CacheIndicator(Cache, int, Component, int, int) - Constructor for class loci.formats.gui.CacheIndicator
Creates a new cache indicator.
CacheListener - Interface in loci.formats.cache
A listener for cache updates.
CacheReporter - Interface in loci.formats.cache
Interface for components capable of reporting cache updates.
CacheSource - Class in loci.formats.cache
Superclass of cache sources that retrieve image planes from a data source (e.g., a file) using Bio-Formats.
CacheSource(IFormatReader) - Constructor for class loci.formats.cache.CacheSource
Constructs a cache source from the given Bio-Formats reader.
CacheSource(String) - Constructor for class loci.formats.cache.CacheSource
Constructs a cache source that draws from the given file.
CacheStrategy - Class in loci.formats.cache
Superclass of cache strategies.
CacheStrategy(int[]) - Constructor for class loci.formats.cache.CacheStrategy
Constructs a cache strategy.
cacheUpdated(CacheEvent) - Method in interface loci.formats.cache.CacheListener
Called when cache is updated.
cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheComponent
Updates GUI to match latest cache state.
cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheIndicator
 
CacheUpdater - Class in loci.formats.cache
Thread responsible for updating the cache (loading and dropping planes) in the background.
CacheUpdater(Cache) - Constructor for class loci.formats.cache.CacheUpdater
 
CalcCountRecord - Class in loci.poi.hssf.record
Title: Calc Count Record Description: Specifies the maximum times the gui should perform a formula recalculation.
CalcCountRecord() - Constructor for class loci.poi.hssf.record.CalcCountRecord
 
CalcCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcCountRecord
Constructs a CalcCountRecord and sets its fields appropriately
calcExtSSTRecordSize() - Method in class loci.poi.hssf.record.SSTRecord
Calculates the size in bytes of the EXTSST record as it would be if the record was serialized.
calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.
calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf
Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.
CalcModeRecord - Class in loci.poi.hssf.record
Title: Calc Mode Record
CalcModeRecord() - Constructor for class loci.poi.hssf.record.CalcModeRecord
 
CalcModeRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcModeRecord
Constructs a CalcModeRecord and sets its fields appropriately
calcPhotons - Variable in class loci.formats.in.SDTInfo
No of photons.
calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
Calculates the parameters of the SubbandAn objects that depend on the Quantizer.
calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
Calculates the parameters of the SubbandAn objects that depend on the Quantizer.
calcSize(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock
Calculate the storage size of a set of SmallDocumentBlocks
calculateStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock
Calculate how many BATBlocks are needed to hold a specified number of BAT entries.
calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock
Calculate how many XBATBlocks are needed to hold a specified number of BAT entries.
Calibrator - Class in loci.plugins.in
Logic for calibrating images.
Calibrator(ImportProcess) - Constructor for class loci.plugins.in.Calibrator
 
CALLOUT__CALLOUTACCENTBAR - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__CALLOUTANGLE - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__CALLOUTDROPSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__CALLOUTDROPTYPE - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__CALLOUTLENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__CALLOUTMINUSX - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__CALLOUTMINUSY - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__CALLOUTTEXTBORDER - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__CALLOUTTYPE - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__DROPAUTO - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__ISCALLOUT - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__LENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
 
CALLOUT__XYCALLOUTGAP - Static variable in class loci.poi.ddf.EscherProperties
 
CAN_GROUP - Static variable in class loci.formats.FormatTools
 
CAN_GROUP - Static variable in interface loci.formats.IFormatReader
 
cancel() - Method in class loci.plugins.in.ImportProcess
Cancels the import process.
canceled - Variable in class loci.plugins.LociImporter
Flag indicating whether last operation was canceled.
canceled - Variable in class loci.plugins.Slicer
Flag indicating whether last operation was canceled.
canceled - Variable in class loci.plugins.Updater
Flag indicating whether last operation was canceled.
canChangePattern() - Method in class loci.formats.FileStitcher
 
canCloseReader - Variable in class loci.formats.gui.ImageViewer
 
canCreatePalette(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
Returns true if PaletteBuilder is able to create palette for given image type.
canCreatePalette(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
Returns true if PaletteBuilder is able to create palette for given rendered image.
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
 
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
 
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
 
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
 
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
 
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
 
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
 
canDoQT() - Method in class loci.formats.gui.LegacyQTTools
Whether QuickTime is available to this JVM.
canDoStacks() - Method in class loci.formats.FormatWriter
 
canDoStacks() - Method in interface loci.formats.IFormatWriter
Reports whether the writer can save multiple images to a single file.
canDoStacks() - Method in class loci.formats.ImageWriter
 
canDoStacks() - Method in class loci.formats.out.APNGWriter
 
canDoStacks() - Method in class loci.formats.out.AVIWriter
 
canDoStacks() - Method in class loci.formats.out.ICSWriter
 
canDoStacks() - Method in class loci.formats.out.JavaWriter
 
canDoStacks() - Method in class loci.formats.out.JPEG2000Writer
Overridden to indicate that stacks are not supported.
canDoStacks() - Method in class loci.formats.out.LegacyQTWriter
 
canDoStacks() - Method in class loci.formats.out.OMEXMLWriter
 
canDoStacks() - Method in class loci.formats.out.QTWriter
 
canDoStacks() - Method in class loci.formats.out.TiffWriter
 
canDoStacks() - Method in class loci.formats.out.WlzWriter
 
canDoStacks() - Method in class loci.formats.WriterWrapper
 
canDoStacks() - Method in class loci.ome.io.OMEWriter
 
canDoUpgradeCheck() - Method in class loci.formats.UpgradeChecker
Return whether or not we are ever allowed to perform an upgrade check.
canEncodeImage(ImageWriter, ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Checks that the provided ImageWriter can encode the provided ImageTypeSpecifier or not.
canEncodeImage(ImageWriter, ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Checks that the provided ImageWriter can encode the provided ColorModel and SampleModel.
canEncodeImage(int, ColorModel, SampleModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
canEncodeImage(int, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
 
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
 
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
 
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
 
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
 
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
 
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
 
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
 
canFitInMemory(long) - Static method in class loci.tests.testng.TestTools
Returns true if a byte buffer of the given size will fit in memory.
canImport(JComponent, DataFlavor[]) - Method in class loci.plugins.shortcut.ShortcutTransferHandler
 
canInsertEmpty(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
canInsertImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
canMerge() - Method in class loci.formats.ChannelMerger
Determines whether the channels in the file can be merged.
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
 
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
 
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
 
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
 
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
 
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
 
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
 
CANNOT_GROUP - Static variable in class loci.formats.FormatTools
 
CANNOT_GROUP - Static variable in interface loci.formats.IFormatReader
 
CanonRawReader - Class in loci.formats.in
CanonRawReader is the file format reader for Canon RAW files.
CanonRawReader() - Constructor for class loci.formats.in.CanonRawReader
Constructs a new Canon RAW reader.
canRead() - Method in class loci.common.Location
If the underlying location is a URL, this method will return true if the URL exists.
canRead(String) - Method in class loci.formats.itk.ITKBridgePipes
Tests whether the given file path can be parsed by Bio-Formats.
canRead() - Method in class ome.scifio.io.Location
If the underlying location is a URL, this method will return true if the URL exists.
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
canReplacePixels(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
canWrite() - Method in class loci.common.Location
If the underlying location is a URL, this method will always return false.
canWrite(String) - Method in class loci.formats.itk.ITKBridgePipes
Tests whether the given file path can be written by Bio-Formats.
canWrite() - Method in class ome.scifio.io.Location
If the underlying location is a URL, this method will always return false.
canWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
 
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
 
canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
CAPTURE_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
CaseInsensitiveLocation - Class in loci.common
Legacy delegator class for CaseInsensitiveLocation Source code: Trac, Gitweb
CaseInsensitiveLocation(String) - Constructor for class loci.common.CaseInsensitiveLocation
 
CaseInsensitiveLocation(File) - Constructor for class loci.common.CaseInsensitiveLocation
 
CaseInsensitiveLocation(String, String) - Constructor for class loci.common.CaseInsensitiveLocation
 
CaseInsensitiveLocation(CaseInsensitiveLocation, String) - Constructor for class loci.common.CaseInsensitiveLocation
 
CaseInsensitiveLocation - Class in ome.scifio.io
Case insensitive variant of Location.
CaseInsensitiveLocation(String) - Constructor for class ome.scifio.io.CaseInsensitiveLocation
 
CaseInsensitiveLocation(File) - Constructor for class ome.scifio.io.CaseInsensitiveLocation
 
CaseInsensitiveLocation(String, String) - Constructor for class ome.scifio.io.CaseInsensitiveLocation
 
CaseInsensitiveLocation(CaseInsensitiveLocation, String) - Constructor for class ome.scifio.io.CaseInsensitiveLocation
 
cat(byte[][]) - Static method in class loci.poi.hpsf.Util
Concatenates the contents of several byte arrays into a single one.
Catalog - Class in mdbtools.libmdb
 
Catalog() - Constructor for class mdbtools.libmdb.Catalog
 
catalog - Variable in class mdbtools.libmdb.MdbHandle
 
CATEGORY_DATA_TYPE_ALL_TEXT_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
CATEGORY_DATA_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord
 
CATEGORY_DATA_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord
 
CATEGORY_DATA_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord
 
CATEGORY_DATA_TYPE_SHOW_LABELS_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
CATEGORY_DATA_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord
 
CATEGORY_DATA_TYPE_VALUE_AND_PERCENTAGE_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
CategorySeriesAxisRecord - Class in loci.poi.hssf.record
This record refers to a category or series axis and is used to specify label/tickmark frequency.
CategorySeriesAxisRecord() - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord
 
CategorySeriesAxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord
Constructs a CategorySeriesAxis record and sets its fields appropriately.
cbLength - Variable in class jj2000.j2k.codestream.reader.PktInfo
The length of the code-block in this packet (in bytes)
cblk - Variable in class jj2000.j2k.codestream.PrecInfo
Code-blocks belonging to this precinct in each subbands of the resolution level
CBlkCoordInfo - Class in jj2000.j2k.codestream
This class is used to store the coordinates of code-blocks.
CBlkCoordInfo() - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo
Constructor.
CBlkCoordInfo(int, int) - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo
Constructor.
CBlkInfo - Class in jj2000.j2k.codestream.reader
This class contains location of code-blocks' piece of codewords (there is one piece per layer) and some other information.
CBlkInfo(int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.reader.CBlkInfo
Constructs a new instance with specified number of layers and code-block coordinates.
CBlkQuantDataSrcDec - Interface in jj2000.j2k.quantization.dequantizer
This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis, fro the decoder side.
CBlkQuantDataSrcEnc - Interface in jj2000.j2k.quantization.quantizer
This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis.
CBlkRateDistStats - Class in jj2000.j2k.entropy.encoder
This class stores coded (compressed) code-blocks with their associated rate-distortion statistics.
CBlkRateDistStats() - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats
Creates a new CBlkRateDistStats object without allocating any space for 'truncRates', 'truncSlopes', 'truncDists' and 'truncIdxs' or 'data'.
CBlkRateDistStats(int, int, int, byte[], int[], double[], boolean[], int, boolean) - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats
Creates a new CBlkRateDistStats object and initializes the valid truncation points, their rates and their slopes, from the 'rates' and 'dist' arrays.
cblks - Variable in class jj2000.j2k.decoder.DecoderSpecs
Code-blocks sizes specification
CBlkSizeSpec - Class in jj2000.j2k.entropy
This class extends ModuleSpec class for code-blocks sizes holding purposes.
CBlkSizeSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec
Creates a new CBlkSizeSpec object for the specified number of tiles and components.
CBlkSizeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec
Creates a new CBlkSizeSpec object for the specified number of tiles and components and the ParameterList instance.
CBlkWTData - Class in jj2000.j2k.wavelet.analysis
This is a generic abstract class to store a code-block of wavelet data, be it quantized or not.
CBlkWTData() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTData
 
CBlkWTDataFloat - Class in jj2000.j2k.wavelet.analysis
This is an implementation of the 'CBlkWTData' abstract class for 32 bit floating point data (float).
CBlkWTDataFloat() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
 
CBlkWTDataInt - Class in jj2000.j2k.wavelet.analysis
This is an implementation of the 'CBlkWTData' abstract class for signed 32 bit integer data.
CBlkWTDataInt() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
 
CBlkWTDataSrc - Interface in jj2000.j2k.wavelet.analysis
This abstract class defines methods to transfer wavelet data in a code-block by code-block basis.
CBlkWTDataSrcDec - Interface in jj2000.j2k.wavelet.synthesis
This abstract class defines methods to transfer wavelet data in a code-block by code-block basis, for the decoder side.
cbOff - Variable in class jj2000.j2k.codestream.reader.PktInfo
The code-block offset in the codestream (for this packet)
CBZip2InputStream - Class in loci.common
Legacy delegator class for ome.scifio.io.CBZip2InputStream.
CBZip2InputStream(InputStream) - Constructor for class loci.common.CBZip2InputStream
Constructs a new CBZip2InputStream which decompresses bytes read from the specified stream.
CBZip2InputStream - Class in ome.scifio.io
An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.
CBZip2InputStream(InputStream) - Constructor for class ome.scifio.io.CBZip2InputStream
Constructs a new CBZip2InputStream which decompresses bytes read from the specified stream.
ccoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
 
ccom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM
 
ce - Variable in class jj2000.j2k.entropy.Progression
Component index for the end of a progression.
CELL_LENGTH - Static variable in class loci.formats.tiff.IFD
 
CELL_TYPE_BLANK - Static variable in class loci.poi.hssf.usermodel.HSSFCell
Blank Cell type (3)
CELL_TYPE_BOOLEAN - Static variable in class loci.poi.hssf.usermodel.HSSFCell
Boolean Cell type (4)
CELL_TYPE_ERROR - Static variable in class loci.poi.hssf.usermodel.HSSFCell
Error Cell type (5)
CELL_TYPE_FORMULA - Static variable in class loci.poi.hssf.usermodel.HSSFCell
Formula Cell type (2)
CELL_TYPE_NUMERIC - Static variable in class loci.poi.hssf.usermodel.HSSFCell
Numeric Cell type (0)
CELL_TYPE_STRING - Static variable in class loci.poi.hssf.usermodel.HSSFCell
String Cell type (1)
CELL_WIDTH - Static variable in class loci.formats.tiff.IFD
 
cellIterator() - Method in class loci.poi.hssf.usermodel.HSSFRow
 
CellomicsReader - Class in loci.formats.in
Reader for Cellomics C01 files.
CellomicsReader() - Constructor for class loci.formats.in.CellomicsReader
Constructs a new Cellomics reader.
CellReference - Class in loci.poi.hssf.util
 
CellReference(String) - Constructor for class loci.poi.hssf.util.CellReference
 
CellReference(int, int) - Constructor for class loci.poi.hssf.util.CellReference
 
CellReference(int, int, boolean, boolean) - Constructor for class loci.poi.hssf.util.CellReference
 
cells - Variable in class loci.poi.hssf.model.Sheet
 
CellSensReader - Class in loci.formats.in
CellSensReader is the file format reader for cellSens .vsi files.
CellSensReader() - Constructor for class loci.formats.in.CellSensReader
Constructs a new cellSens reader.
CellValueRecordInterface - Interface in loci.poi.hssf.record
The cell value record interface is implemented by all classes of type Record that contain cell values.
CellVoyagerReader - Class in loci.formats.in
A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope ( http://www.yokogawa.com/scanner/products/cv1000e.htm).
CellVoyagerReader() - Constructor for class loci.formats.in.CellVoyagerReader
 
CellWorxReader - Class in loci.formats.in
CellWorxReader is the file format reader for CellWorx .pnl files.
CellWorxReader() - Constructor for class loci.formats.in.CellWorxReader
Constructs a new CellWorx reader.
CENTER - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
CENTER_SELECTION - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
CENTERED_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
 
cepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
 
certain - Variable in class loci.formats.AxisGuesser
Whether the guesser is confident that all axis types are correct.
CF_BITMAP - Static variable in class loci.poi.hpsf.Thumbnail
Clipboard Format - Bitmap
CF_DIB - Static variable in class loci.poi.hpsf.Thumbnail
Clipboard Format - Device Independent Bitmap
CF_ENHMETAFILE - Static variable in class loci.poi.hpsf.Thumbnail
Clipboard Format - Enhanced Windows metafile format
CF_METAFILEPICT - Static variable in class loci.poi.hpsf.Thumbnail
Clipboard Format - Windows metafile format.
CFA_PATTERN - Static variable in class loci.formats.tiff.IFD
 
cfdHF - Variable in class loci.formats.in.SDTInfo
 
cfdLH - Variable in class loci.formats.in.SDTInfo
 
cfdLL - Variable in class loci.formats.in.SDTInfo
 
cfdZC - Variable in class loci.formats.in.SDTInfo
 
CFG_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
 
CFG_SUFFIX - Static variable in class loci.formats.in.PrairieReader
 
CFTAG_FMTID - Static variable in class loci.poi.hpsf.Thumbnail
Clipboard Format Tag - Format ID
CFTAG_MACINTOSH - Static variable in class loci.poi.hpsf.Thumbnail
Clipboard Format Tag - Macintosh clipboard format
CFTAG_NODATA - Static variable in class loci.poi.hpsf.Thumbnail
Clipboard Format Tag - No Data
CFTAG_WINDOWS - Static variable in class loci.poi.hpsf.Thumbnail
Clipboard Format Tag - Windows clipboard format
chan - Variable in class loci.formats.in.SDTInfo
Routing channel number.
changedUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets
 
changeName(Property, String) - Method in class loci.poi.poifs.property.DirectoryProperty
Change a Property's name
changeOutputFile(String) - Method in class loci.formats.FormatWriter
 
changeOutputFile(String) - Method in interface loci.formats.IFormatWriter
Switch the output file for the current dataset.
changeOutputFile(String) - Method in class loci.formats.ImageWriter
 
changeOutputFile(String) - Method in class loci.formats.WriterWrapper
 
chanMax - Variable in class loci.formats.MinMaxCalculator
Max values for each channel.
chanMin - Variable in class loci.formats.MinMaxCalculator
Min values for each channel.
CHANNEL - Static variable in class loci.formats.FormatTools
Identifies the Channel dimensional type, representing a generic channel dimension.
channel - Variable in class ome.scifio.io.NIOFileHandle
The file channel backed by the random access file.
channel - Variable in class ome.scifio.io.NIOInputStream
The file channel backed by the random access file.
Channel - Class in ome.xml.model
 
Channel() - Constructor for class ome.xml.model.Channel
Default constructor.
Channel(Element, OMEModel) - Constructor for class ome.xml.model.Channel
Constructs Channel recursively from an XML DOM tree.
Channel(Channel) - Constructor for class ome.xml.model.Channel
Copy constructor.
CHANNEL_DEFINITION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
CHANNEL_NAME - Static variable in class loci.formats.FormatTools
 
CHANNEL_NUM - Static variable in class loci.formats.FormatTools
 
channelColors - Variable in class loci.formats.in.BaseZeissReader
 
ChannelDefinitionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is designed to represent a Channel Definition Box of JPEG JP2 file format.
ChannelDefinitionBox(ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
Constructs a ChannelDefinitionBox based on the provided ColorModel.
ChannelDefinitionBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
Constructs a ChannelDefinitionBox based on the provided content in byte array.
ChannelDefinitionBox(short[], short[], short[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
Constructs a ChannelDefinitionBox based on the provided channel definitions.
ChannelDefinitionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
Constructs a ChannelDefinitionBox based on the provided org.w3c.dom.Node.
ChannelFiller - Class in loci.formats
For indexed color data representing true color, factors out the indices, replacing them with the color table values directly.
ChannelFiller() - Constructor for class loci.formats.ChannelFiller
Constructs a ChannelFiller around a new image reader.
ChannelFiller(IFormatReader) - Constructor for class loci.formats.ChannelFiller
Constructs a ChannelFiller with a given reader.
ChannelImageInputStreamSpi - Class in com.sun.media.imageioimpl.stream
 
ChannelImageInputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
 
ChannelImageOutputStreamSpi - Class in com.sun.media.imageioimpl.stream
 
ChannelImageOutputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
 
channelIndices - Variable in class loci.formats.in.BaseZeissReader
 
ChannelMerger - Class in loci.formats
Logic to automatically merge channels in a file.
ChannelMerger() - Constructor for class loci.formats.ChannelMerger
Constructs a ChannelMerger around a new image reader.
ChannelMerger(IFormatReader) - Constructor for class loci.formats.ChannelMerger
Constructs a ChannelMerger with the given reader.
channelName - Variable in class loci.formats.in.BaseZeissReader
 
channelName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
 
ChannelRef - Class in ome.xml.model
 
ChannelRef() - Constructor for class ome.xml.model.ChannelRef
Default constructor.
ChannelRef(Element, OMEModel) - Constructor for class ome.xml.model.ChannelRef
Constructs ChannelRef recursively from an XML DOM tree.
ChannelRef(ChannelRef) - Constructor for class ome.xml.model.ChannelRef
Copy constructor.
channels - Variable in class loci.formats.codec.CodecOptions
Number of channels.
channels - Variable in class loci.formats.in.SDTInfo
 
channels - Variable in class loci.formats.in.SDTReader
Number of spectral channels.
ChannelSeparator - Class in loci.formats
Logic to automatically separate the channels in a file.
ChannelSeparator() - Constructor for class loci.formats.ChannelSeparator
Constructs a ChannelSeparator around a new image reader.
ChannelSeparator(IFormatReader) - Constructor for class loci.formats.ChannelSeparator
Constructs a ChannelSeparator with the given reader.
chanStore - Variable in class loci.formats.in.SDTReader
 
characterCellHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
characterCellWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
characters(char[], int, int) - Method in class loci.formats.in.FlexReader.FlexHandler
 
characters(char[], int, int) - Method in class loci.formats.in.ZeissTIFFHandler
 
ChartFormatRecord - Class in loci.poi.hssf.record
Class ChartFormatRecord
ChartFormatRecord() - Constructor for class loci.poi.hssf.record.ChartFormatRecord
 
ChartFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartFormatRecord
Constructs a ChartFormatRecord record and sets its fields appropriately.
ChartRecord - Class in loci.poi.hssf.record
The chart record is used to define the location and size of a chart.
ChartRecord() - Constructor for class loci.poi.hssf.record.ChartRecord
 
ChartRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartRecord
Constructs a Chart record and sets its fields appropriately.
check(int) - Method in class loci.poi.util.CommonsLogger
Check if a logger is enabled to log at the specified level
check(int) - Method in class loci.poi.util.NullLogger
Check if a logger is enabled to log at the specified level
check(int) - Method in class loci.poi.util.POILogger
Check if a logger is enabled to log at the specified level
check(int) - Method in class loci.poi.util.SystemOutLogger
Check if a logger is enabled to log at the specified level
checkBufferSize(IFormatReader, int) - Static method in class loci.formats.FormatTools
 
checkBufferSize(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools
Checks that the given buffer size is large enough to hold a w * h image as returned by the given reader.
checkClass(String) - Static method in class loci.plugins.util.LibraryChecker
Checks whether the given class is available.
checkClassDependency(Class<? extends Object>) - Method in class loci.common.services.AbstractService
Checks a given class dependency at runtime to ensure that a given class will be available.
checkClassDependency(Class<? extends Object>) - Method in class loci.formats.services.WlzServiceImpl
 
checkDimsLoc(Record, int) - Method in class loci.poi.hssf.model.Sheet
in the event the record is a dimensions record, resets both the loc index and dimsloc index
checkExternSheet(int) - Method in class loci.poi.hssf.model.Workbook
returns the extern sheet number for specific sheet number , if this sheet doesn't exist in extern sheet , add it
checkHeader() - Method in class loci.formats.tiff.TiffParser
Checks the TIFF header.
checkImageJ() - Static method in class loci.plugins.util.LibraryChecker
Checks whether ImageJ is new enough for the LOCI plugins.
checkImageJ(String, String) - Static method in class loci.plugins.util.LibraryChecker
Returns true the current ImageJ version is greater than or equal to the specified version.
checkImageJ(String, String, String) - Static method in class loci.plugins.util.LibraryChecker
Returns true the current ImageJ version is greater than or equal to the specified version.
checkJava() - Static method in class loci.plugins.util.LibraryChecker
Checks for a new enough version of the Java Runtime Environment.
checkKey(String, String) - Method in class loci.plugins.in.ImporterOptions
Tests whether the given boolean key is set in the specified options.
checkLatest(String, String) - Static method in class loci.plugins.config.InstallWizard
 
checkLibrary(LibraryChecker.Library, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
Checks for a required library.
checkLibrary(String, String, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
Checks whether the given class is available; if not, adds the specified JAR file name to the hash set (presumably to report it missing to the user).
checkMarkerLength(DataInputStream, String) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Checks that the marker segment length is correct.
checkMissing(HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
Reports missing libraries in the given hash set to the user.
checkObsoleteOptions() - Method in class loci.plugins.in.ImporterOptions
Handles obsolete macro keys, for backward compatibility.
checkParams(int, byte[], int, int, int, int) - Method in class loci.formats.FormatWriter
Ensure that the arguments that are being passed to saveBytes(...) are valid.
checkPlaneNumber(IFormatReader, int) - Static method in class loci.formats.FormatTools
Checks that the given plane number is valid for the given reader.
checkPlaneParameters(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools
Convenience method for checking that the plane number, tile size and buffer sizes are all valid for the given reader.
checkPredTerm() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
Checks for past errors in the decoding process using the predictable error resilient termination.
checkQTLibrary() - Method in class loci.formats.gui.LegacyQTTools
Checks whether QTJava is available, throwing an exception if not.
checkReadParamBandSettingsWrapper(ImageReadParam, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
Wrapper for the protected method checkReadParamBandSettings.
checkRecordPosition() - Method in class loci.poi.hssf.record.RecordInputStream
 
checkSuffix(String, String) - Static method in class loci.formats.FormatHandler
Performs suffix matching for the given filename.
checkSuffix(String, String[]) - Static method in class loci.formats.FormatHandler
Performs suffix matching for the given filename.
checkTargetErrors() - Method in class jj2000.j2k.util.ThreadPool
Checks that no error or runtime exception in any target have occurred so far.
checkTileSize(IFormatReader, int, int, int, int) - Static method in class loci.formats.FormatTools
Checks that the given tile size is valid for the given reader.
checkValidId(String) - Static method in class loci.common.Location
Checks that the given id points at a valid data stream.
checkValidId(String) - Static method in class ome.scifio.io.Location
Checks that the given id points at a valid data stream.
Child - Interface in loci.poi.poifs.property
This interface defines methods for finding and setting sibling Property instances
childCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
chksum - Variable in class loci.formats.in.SDTInfo
 
CI_SERVER - Static variable in class loci.formats.UpgradeChecker
Location of the OME continuous integration server.
cIndex - Variable in class loci.formats.in.BaseZeissReader
 
cIndex - Variable in class loci.plugins.util.DataBrowser
 
CLASS_ARRAY - Static variable in class loci.poi.hssf.record.formula.Ptg
 
CLASS_REF - Static variable in class loci.poi.hssf.record.formula.Ptg
 
CLASS_VALUE - Static variable in class loci.poi.hssf.record.formula.Ptg
 
ClassID - Class in loci.poi.hpsf
Represents a class ID (16 bytes).
ClassID(byte[], int) - Constructor for class loci.poi.hpsf.ClassID
Creates a ClassID and reads its value from a byte array.
ClassID() - Constructor for class loci.poi.hpsf.ClassID
Creates a ClassID and initializes its value with 0x00 bytes.
classID - Variable in class loci.poi.hpsf.PropertySet
Specifies this PropertySet's "classID" field.
ClassList<T> - Class in loci.formats
ClassList is a list of classes for use with ImageReader or ImageWriter, parsed from a configuration file such as readers.txt or writers.txt.
ClassList(Class<T>) - Constructor for class loci.formats.ClassList
Constructs a list of classes, initially empty.
ClassList(String, Class<T>) - Constructor for class loci.formats.ClassList
Constructs a list of classes from the given configuration file.
ClassList(String, Class<T>, Class<?>) - Constructor for class loci.formats.ClassList
Constructs a list of classes from the given configuration file.
CLEAN_FAX_DATA_ERRORS_CORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
A value to be used with the "CleanFaxData" tag.
CLEAN_FAX_DATA_ERRORS_UNCORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
A value to be used with the "CleanFaxData" tag.
CLEAN_FAX_DATA_NO_ERRORS - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
A value to be used with the "CleanFaxData" tag.
cleanStaleCacheEntries() - Static method in class loci.common.Location
Remove any cached directory listings that have expired.
cleanStaleCacheEntries() - Static method in class ome.scifio.io.Location
Remove any cached directory listings that have expired.
cleanup() - Method in class loci.formats.Memoizer
 
cleanup() - Method in class loci.tests.testng.SubResolutionTest
 
clear() - Method in class loci.common.IniList
 
clear() - Method in class loci.common.IniTable
 
clear() - Method in class loci.formats.codec.ByteVector
 
clear() - Method in class loci.legacy.adapter.AbstractLegacyAdapter
 
clear() - Method in interface loci.legacy.adapter.LegacyAdapter
Resets any mappings in this adapter.
clear() - Method in class loci.poi.hpsf.MutableSection
Removes all properties from the section including 0 (dictionary) and 1 (codepage).
clear() - Method in class loci.poi.hssf.record.EscherAggregate
 
clear() - Method in class loci.poi.util.BinaryTree
Removes all mappings from this map
clear(int) - Method in class loci.poi.util.BitField
Clear the bits.
clear() - Method in class loci.poi.util.DoubleList
Removes all of the elements from this list.
clear() - Method in class loci.poi.util.IntList
Removes all of the elements from this list.
clear() - Method in class loci.poi.util.ShortList
Removes all of the elements from this list.
clearByte(byte) - Method in class loci.poi.util.BitField
Clear the bits.
clearDestImage() - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
 
clearDirectoryListingsCache() - Static method in class loci.common.Location
Clear the directory listings cache.
clearDirectoryListingsCache() - Static method in class ome.scifio.io.Location
Clear the directory listings cache.
clearEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
clearFormatting() - Method in class loci.poi.hssf.record.UnicodeString
 
clearFormatting() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
Removes any formatting that may have been applied to the string.
clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
clearSections() - Method in class loci.poi.hpsf.MutablePropertySet
Removes all sections from this property set.
clearSections() - Method in class loci.poi.hpsf.SpecialPropertySet
 
clearSeries() - Method in class loci.plugins.in.ImporterOptions
 
clearShort(short) - Method in class loci.poi.util.BitField
Clear the bits.
clearSubRecords() - Method in class loci.poi.hssf.record.ObjRecord
 
ClearTable(int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
 
clearTargetErrors() - Method in class jj2000.j2k.util.ThreadPool
Clears the current target error conditions, if any.
cLengths - Variable in class loci.formats.CoreMetadata
Deprecated.
cLengths - Variable in class loci.plugins.util.DataBrowser
 
clip(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
clip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
clone() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Clones the directory and all the fields contained therein.
clone() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
clone() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
clone() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
clone() - Method in class jj2000.j2k.ModuleSpec
 
clone() - Method in class loci.common.IniList
 
clone() - Method in class loci.common.IniTable
 
clone() - Method in class loci.formats.CoreMetadata
 
clone(IFormatReader, int) - Method in class loci.formats.CoreMetadata
 
clone() - Method in class loci.formats.SwappableMetadata
 
clone(IFormatReader, int) - Method in class loci.formats.SwappableMetadata
 
clone() - Method in class loci.poi.ddf.EscherRecord
Escher records may need to be clonable in the future.
clone() - Method in class loci.poi.ddf.EscherTextboxRecord
 
clone() - Method in class loci.poi.ddf.UnknownEscherRecord
 
clone() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
clone() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
Performs a deep clone of the record
clone() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
clone() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
Performs a deep clone of the record
clone() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
Performs a deep clone of the record
clone() - Method in class loci.poi.hssf.record.AreaFormatRecord
 
clone() - Method in class loci.poi.hssf.record.AreaRecord
 
clone() - Method in class loci.poi.hssf.record.AxisLineFormatRecord
 
clone() - Method in class loci.poi.hssf.record.AxisOptionsRecord
 
clone() - Method in class loci.poi.hssf.record.AxisParentRecord
 
clone() - Method in class loci.poi.hssf.record.AxisRecord
 
clone() - Method in class loci.poi.hssf.record.AxisUsedRecord
 
clone() - Method in class loci.poi.hssf.record.BarRecord
 
clone() - Method in class loci.poi.hssf.record.BlankRecord
 
clone() - Method in class loci.poi.hssf.record.BOFRecord
 
clone() - Method in class loci.poi.hssf.record.BoolErrRecord
 
clone() - Method in class loci.poi.hssf.record.BottomMarginRecord
 
clone() - Method in class loci.poi.hssf.record.CalcCountRecord
 
clone() - Method in class loci.poi.hssf.record.CalcModeRecord
 
clone() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
 
clone() - Method in interface loci.poi.hssf.record.CellValueRecordInterface
 
clone() - Method in class loci.poi.hssf.record.ChartRecord
 
clone() - Method in class loci.poi.hssf.record.ColumnInfoRecord
 
clone() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
clone() - Method in class loci.poi.hssf.record.ContinueRecord
Clone this record.
clone() - Method in class loci.poi.hssf.record.DataFormatRecord
 
clone() - Method in class loci.poi.hssf.record.DatRecord
 
clone() - Method in class loci.poi.hssf.record.DefaultColWidthRecord
 
clone() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
clone() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
 
clone() - Method in class loci.poi.hssf.record.DeltaRecord
 
clone() - Method in class loci.poi.hssf.record.DimensionsRecord
 
clone() - Method in class loci.poi.hssf.record.EndSubRecord
 
clone() - Method in class loci.poi.hssf.record.EOFRecord
 
clone() - Method in class loci.poi.hssf.record.FilePassRecord
 
clone() - Method in class loci.poi.hssf.record.FileSharingRecord
Clone this record.
clone() - Method in class loci.poi.hssf.record.FontBasisRecord
 
clone() - Method in class loci.poi.hssf.record.FontIndexRecord
 
clone() - Method in class loci.poi.hssf.record.FooterRecord
 
clone() - Method in class loci.poi.hssf.record.formula.AddPtg
 
clone() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
clone() - Method in class loci.poi.hssf.record.formula.AreaAPtg
 
clone() - Method in class loci.poi.hssf.record.formula.AreaErrPtg
 
clone() - Method in class loci.poi.hssf.record.formula.AreaNAPtg
 
clone() - Method in class loci.poi.hssf.record.formula.AreaNPtg
 
clone() - Method in class loci.poi.hssf.record.formula.AreaNVPtg
 
clone() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
clone() - Method in class loci.poi.hssf.record.formula.AreaVPtg
 
clone() - Method in class loci.poi.hssf.record.formula.ArrayPtg
 
clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgA
 
clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgV
 
clone() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
clone() - Method in class loci.poi.hssf.record.formula.BoolPtg
 
clone() - Method in class loci.poi.hssf.record.formula.ConcatPtg
 
clone() - Method in class loci.poi.hssf.record.formula.DividePtg
 
clone() - Method in class loci.poi.hssf.record.formula.EqualPtg
 
clone() - Method in class loci.poi.hssf.record.formula.ErrPtg
 
clone() - Method in class loci.poi.hssf.record.formula.ExpPtg
 
clone() - Method in class loci.poi.hssf.record.formula.FuncPtg
 
clone() - Method in class loci.poi.hssf.record.formula.FuncVarPtg
 
clone() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
 
clone() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg
Implementation of clone method from Object
clone() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
 
clone() - Method in class loci.poi.hssf.record.formula.IntPtg
 
clone() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
 
clone() - Method in class loci.poi.hssf.record.formula.LessThanPtg
Implementation of clone method from Object
clone() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
 
clone() - Method in class loci.poi.hssf.record.formula.MemErrPtg
 
clone() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
 
clone() - Method in class loci.poi.hssf.record.formula.MissingArgPtg
 
clone() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
 
clone() - Method in class loci.poi.hssf.record.formula.NamePtg
 
clone() - Method in class loci.poi.hssf.record.formula.NameXPtg
 
clone() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
 
clone() - Method in class loci.poi.hssf.record.formula.NumberPtg
 
clone() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
 
clone() - Method in class loci.poi.hssf.record.formula.PercentPtg
 
clone() - Method in class loci.poi.hssf.record.formula.PowerPtg
 
clone() - Method in class loci.poi.hssf.record.formula.Ptg
 
clone() - Method in class loci.poi.hssf.record.formula.RangePtg
 
clone() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
clone() - Method in class loci.poi.hssf.record.formula.RefAPtg
 
clone() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
clone() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
 
clone() - Method in class loci.poi.hssf.record.formula.RefNAPtg
 
clone() - Method in class loci.poi.hssf.record.formula.RefNPtg
 
clone() - Method in class loci.poi.hssf.record.formula.RefNVPtg
 
clone() - Method in class loci.poi.hssf.record.formula.RefVPtg
 
clone() - Method in class loci.poi.hssf.record.formula.StringPtg
 
clone() - Method in class loci.poi.hssf.record.formula.SubtractPtg
 
clone() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
 
clone() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
 
clone() - Method in class loci.poi.hssf.record.formula.UnionPtg
 
clone() - Method in class loci.poi.hssf.record.formula.UnknownPtg
 
clone() - Method in class loci.poi.hssf.record.FormulaRecord
 
clone() - Method in class loci.poi.hssf.record.FrameRecord
 
clone() - Method in class loci.poi.hssf.record.GridsetRecord
 
clone() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord
 
clone() - Method in class loci.poi.hssf.record.GutsRecord
 
clone() - Method in class loci.poi.hssf.record.HCenterRecord
 
clone() - Method in class loci.poi.hssf.record.HeaderRecord
 
clone() - Method in class loci.poi.hssf.record.IndexRecord
 
clone() - Method in class loci.poi.hssf.record.IterationRecord
 
clone() - Method in class loci.poi.hssf.record.LabelRecord
 
clone() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
clone() - Method in class loci.poi.hssf.record.LeftMarginRecord
 
clone() - Method in class loci.poi.hssf.record.LegendRecord
 
clone() - Method in class loci.poi.hssf.record.LineFormatRecord
 
clone() - Method in class loci.poi.hssf.record.LinkedDataFormulaField
 
clone() - Method in class loci.poi.hssf.record.LinkedDataRecord
 
clone() - Method in class loci.poi.hssf.record.MergeCellsRecord
 
clone() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
 
clone() - Method in class loci.poi.hssf.record.NumberRecord
 
clone() - Method in class loci.poi.hssf.record.ObjectLinkRecord
 
clone() - Method in class loci.poi.hssf.record.ObjectProtectRecord
 
clone() - Method in class loci.poi.hssf.record.ObjRecord
 
clone() - Method in class loci.poi.hssf.record.PageBreakRecord
 
clone() - Method in class loci.poi.hssf.record.PaneRecord
 
clone() - Method in class loci.poi.hssf.record.PasswordRecord
Clone this record.
clone() - Method in class loci.poi.hssf.record.PlotAreaRecord
 
clone() - Method in class loci.poi.hssf.record.PlotGrowthRecord
 
clone() - Method in class loci.poi.hssf.record.PrintGridlinesRecord
 
clone() - Method in class loci.poi.hssf.record.PrintHeadersRecord
 
clone() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
clone() - Method in class loci.poi.hssf.record.ProtectRecord
 
clone() - Method in class loci.poi.hssf.record.Record
 
clone() - Method in class loci.poi.hssf.record.RefModeRecord
 
clone() - Method in class loci.poi.hssf.record.RightMarginRecord
 
clone() - Method in class loci.poi.hssf.record.RKRecord
 
clone() - Method in class loci.poi.hssf.record.RowRecord
 
clone() - Method in class loci.poi.hssf.record.SaveRecalcRecord
 
clone() - Method in class loci.poi.hssf.record.ScenarioProtectRecord
 
clone() - Method in class loci.poi.hssf.record.SCLRecord
 
clone() - Method in class loci.poi.hssf.record.SelectionRecord
 
clone() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
 
clone() - Method in class loci.poi.hssf.record.SeriesIndexRecord
 
clone() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
 
clone() - Method in class loci.poi.hssf.record.SeriesListRecord
 
clone() - Method in class loci.poi.hssf.record.SeriesRecord
 
clone() - Method in class loci.poi.hssf.record.SeriesTextRecord
 
clone() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
 
clone() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
clone() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
 
clone() - Method in class loci.poi.hssf.record.StringRecord
 
clone() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
clone() - Method in class loci.poi.hssf.record.TextRecord
 
clone() - Method in class loci.poi.hssf.record.TickRecord
 
clone() - Method in class loci.poi.hssf.record.TopMarginRecord
 
clone() - Method in class loci.poi.hssf.record.UnicodeString
 
clone() - Method in class loci.poi.hssf.record.UnitsRecord
 
clone() - Method in class loci.poi.hssf.record.UnknownRecord
Unlike the other Record.clone methods this is a shallow clone
clone() - Method in class loci.poi.hssf.record.ValueRangeRecord
 
clone() - Method in class loci.poi.hssf.record.VCenterRecord
 
clone() - Method in class loci.poi.hssf.record.WindowTwoRecord
 
clone() - Method in class loci.poi.hssf.record.WSBoolRecord
 
clone() - Method in class mdbtools.libmdb.MdbColumn
 
clone() - Method in class mdbtools.libmdb.MdbSarg
 
cloneNode(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
cloneSheet() - Method in class loci.poi.hssf.model.Sheet
Clones the low level records of this sheet and returns the new sheet instance.
cloneSheet(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
create an HSSFSheet from an existing sheet in the HSSFWorkbook.
close() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
Invokes the superclass method and sets the internal reference to the source FileChannel to null.
close() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
Invokes the superclass method, writes any unwritten data, and sets the internal reference to the source FileChannel to null.
close() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
close() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
 
close() - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter
 
close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
 
close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
 
close() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
Closes the underlying resource (file, stream, network connection, etc.).
close() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
Writes the EOC marker and closes the underlying stream.
close() - Method in class jj2000.j2k.image.input.ImgReader
Closes the underlying file or network connection from where the image data is being read.
close() - Method in class jj2000.j2k.image.input.ImgReaderPGM
Closes the underlying RandomAccessFile from where the image data is being read.
close() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
Closes the buffered random access file
close() - Method in interface jj2000.j2k.io.RandomAccessIO
Closes the I/O stream.
close() - Method in class jj2000.j2k.util.ISRandomAccessIO
Closes this object for reading as well as the wrapped InputStream, if not already closed.
close() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper
 
close() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper
 
close() - Method in class loci.common.ByteArrayHandle
 
close() - Method in class loci.common.CBZip2InputStream
 
close() - Method in class loci.common.FileHandle
 
close() - Method in interface loci.common.IRandomAccess
Closes this random access stream and releases any system resources associated with the stream.
close() - Method in class loci.common.NIOFileHandle
 
close() - Method in class loci.common.NIOInputStream
Closes the streams.
close() - Method in class loci.common.RandomAccessInputStream
Closes the streams.
close() - Method in class loci.common.RandomAccessOutputStream
 
close() - Method in class loci.common.StreamHandle
 
close() - Method in class loci.common.ZipHandle
 
close(boolean) - Method in class loci.formats.ChannelSeparator
 
close() - Method in class loci.formats.codec.JPEGTileDecoder
 
close(boolean) - Method in class loci.formats.DelegateReader
 
close() - Method in class loci.formats.FileStitcher
 
close(boolean) - Method in class loci.formats.FileStitcher
 
close(boolean) - Method in class loci.formats.FormatReader
 
close() - Method in class loci.formats.FormatReader
 
close() - Method in class loci.formats.FormatWriter
 
close() - Method in class loci.formats.gui.BufferedImageWriter
 
close() - Method in class loci.formats.gui.PreviewPane
Closes the underlying image reader.
close(boolean) - Method in interface loci.formats.IFormatReader
Closes the currently open file.
close(boolean) - Method in class loci.formats.ImageReader
 
close() - Method in class loci.formats.ImageReader
 
close() - Method in class loci.formats.ImageWriter
 
close(boolean) - Method in class loci.formats.in.AFIReader
 
close(boolean) - Method in class loci.formats.in.AIMReader
 
close(boolean) - Method in class loci.formats.in.AliconaReader
 
close(boolean) - Method in class loci.formats.in.AnalyzeReader
 
close(boolean) - Method in class loci.formats.in.APLReader
 
close(boolean) - Method in class loci.formats.in.APNGReader
 
close(boolean) - Method in class loci.formats.in.AVIReader
 
close(boolean) - Method in class loci.formats.in.BaseZeissReader
 
close(boolean) - Method in class loci.formats.in.BDReader
 
close(boolean) - Method in class loci.formats.in.BioRadReader
 
close(boolean) - Method in class loci.formats.in.BioRadSCNReader
 
close(boolean) - Method in class loci.formats.in.BMPReader
 
close(boolean) - Method in class loci.formats.in.BrukerReader
 
close(boolean) - Method in class loci.formats.in.BurleighReader
 
close(boolean) - Method in class loci.formats.in.CanonRawReader
 
close(boolean) - Method in class loci.formats.in.CellomicsReader
 
close(boolean) - Method in class loci.formats.in.CellSensReader
 
close(boolean) - Method in class loci.formats.in.CellWorxReader
 
close(boolean) - Method in class loci.formats.in.DeltavisionReader
 
close(boolean) - Method in class loci.formats.in.DicomReader
 
close(boolean) - Method in class loci.formats.in.DNGReader
 
close(boolean) - Method in class loci.formats.in.EPSReader
 
close(boolean) - Method in class loci.formats.in.FakeReader
 
close(boolean) - Method in class loci.formats.in.FEIReader
 
close(boolean) - Method in class loci.formats.in.FEITiffReader
 
close(boolean) - Method in class loci.formats.in.FitsReader
 
close(boolean) - Method in class loci.formats.in.FlexReader
 
close(boolean) - Method in class loci.formats.in.FluoviewReader
 
close(boolean) - Method in class loci.formats.in.FujiReader
 
close(boolean) - Method in class loci.formats.in.FV1000Reader
 
close(boolean) - Method in class loci.formats.in.GatanDM2Reader
 
close(boolean) - Method in class loci.formats.in.GatanReader
 
close(boolean) - Method in class loci.formats.in.GIFReader
 
close(boolean) - Method in class loci.formats.in.HamamatsuVMSReader
 
close(boolean) - Method in class loci.formats.in.HitachiReader
 
close(boolean) - Method in class loci.formats.in.HRDGDFReader
 
close(boolean) - Method in class loci.formats.in.ICSReader
 
close(boolean) - Method in class loci.formats.in.ImaconReader
 
close(boolean) - Method in class loci.formats.in.ImageIOReader
 
close(boolean) - Method in class loci.formats.in.ImagicReader
 
close(boolean) - Method in class loci.formats.in.ImarisHDFReader
 
close(boolean) - Method in class loci.formats.in.ImarisReader
 
close(boolean) - Method in class loci.formats.in.IMODReader
 
close(boolean) - Method in class loci.formats.in.ImprovisionTiffReader
 
close(boolean) - Method in class loci.formats.in.ImspectorReader
 
close(boolean) - Method in class loci.formats.in.InCell3000Reader
 
close(boolean) - Method in class loci.formats.in.InCellReader
 
close(boolean) - Method in class loci.formats.in.InveonReader
 
close(boolean) - Method in class loci.formats.in.IPLabReader
 
close(boolean) - Method in class loci.formats.in.IPWReader
 
close(boolean) - Method in class loci.formats.in.IvisionReader
 
close(boolean) - Method in class loci.formats.in.JEOLReader
 
close(boolean) - Method in class loci.formats.in.JPEG2000Reader
 
close(boolean) - Method in class loci.formats.in.JPEGReader
 
close(boolean) - Method in class loci.formats.in.JPXReader
 
close(boolean) - Method in class loci.formats.in.KhorosReader
 
close(boolean) - Method in class loci.formats.in.KodakReader
 
close(boolean) - Method in class loci.formats.in.L2DReader
 
close(boolean) - Method in class loci.formats.in.LegacyQTReader
 
close(boolean) - Method in class loci.formats.in.LeicaReader
 
close(boolean) - Method in class loci.formats.in.LeicaSCNReader
 
close(boolean) - Method in class loci.formats.in.LiFlimReader
 
close(boolean) - Method in class loci.formats.in.LIFReader
 
close(boolean) - Method in class loci.formats.in.LIMReader
 
close(boolean) - Method in class loci.formats.in.MetamorphReader
 
close(boolean) - Method in class loci.formats.in.MIASReader
 
close(boolean) - Method in class loci.formats.in.MicromanagerReader
 
close(boolean) - Method in class loci.formats.in.MINCReader
 
close(boolean) - Method in class loci.formats.in.MinimalTiffReader
 
close(boolean) - Method in class loci.formats.in.MNGReader
 
close(boolean) - Method in class loci.formats.in.MolecularImagingReader
 
close(boolean) - Method in class loci.formats.in.MRCReader
 
close(boolean) - Method in class loci.formats.in.MRWReader
 
close(boolean) - Method in class loci.formats.in.NAFReader
 
close(boolean) - Method in class loci.formats.in.NativeND2Reader
 
close(boolean) - Method in class loci.formats.in.NativeQTReader
 
close(boolean) - Method in class loci.formats.in.NDPIReader
 
close(boolean) - Method in class loci.formats.in.NDPISReader
 
close(boolean) - Method in class loci.formats.in.NiftiReader
 
close(boolean) - Method in class loci.formats.in.NikonElementsTiffReader
 
close(boolean) - Method in class loci.formats.in.NikonReader
 
close(boolean) - Method in class loci.formats.in.NikonTiffReader
 
close(boolean) - Method in class loci.formats.in.NRRDReader
 
close(boolean) - Method in class loci.formats.in.OBFReader
 
close(boolean) - Method in class loci.formats.in.OMETiffReader
 
close(boolean) - Method in class loci.formats.in.OMEXMLReader
 
close(boolean) - Method in class loci.formats.in.OpenlabRawReader
 
close(boolean) - Method in class loci.formats.in.OpenlabReader
 
close(boolean) - Method in class loci.formats.in.OperettaReader
 
close(boolean) - Method in class loci.formats.in.PCIReader
 
close(boolean) - Method in class loci.formats.in.PCORAWReader
 
close(boolean) - Method in class loci.formats.in.PCXReader
 
close(boolean) - Method in class loci.formats.in.PDSReader
 
close(boolean) - Method in class loci.formats.in.PerkinElmerReader
 
close(boolean) - Method in class loci.formats.in.PGMReader
 
close(boolean) - Method in class loci.formats.in.PhotoshopTiffReader
 
close(boolean) - Method in class loci.formats.in.PictReader
 
close(boolean) - Method in class loci.formats.in.PrairieReader
 
close(boolean) - Method in class loci.formats.in.PSDReader
 
close(boolean) - Method in class loci.formats.in.QuesantReader
 
close(boolean) - Method in class loci.formats.in.RHKReader
 
close(boolean) - Method in class loci.formats.in.SBIGReader
 
close(boolean) - Method in class loci.formats.in.ScanrReader
 
close(boolean) - Method in class loci.formats.in.ScreenReader
 
close(boolean) - Method in class loci.formats.in.SDTReader
 
close(boolean) - Method in class loci.formats.in.SIFReader
 
close(boolean) - Method in class loci.formats.in.SimplePCITiffReader
 
close(boolean) - Method in class loci.formats.in.SISReader
 
close(boolean) - Method in class loci.formats.in.SlidebookReader
 
close(boolean) - Method in class loci.formats.in.SlidebookTiffReader
 
close(boolean) - Method in class loci.formats.in.SpiderReader
 
close(boolean) - Method in class loci.formats.in.SVSReader
 
close(boolean) - Method in class loci.formats.in.TargaReader
 
close(boolean) - Method in class loci.formats.in.TCSReader
 
close(boolean) - Method in class loci.formats.in.TextReader
 
close(boolean) - Method in class loci.formats.in.TiffReader
 
close(boolean) - Method in class loci.formats.in.TileJPEGReader
 
close(boolean) - Method in class loci.formats.in.TillVisionReader
 
close(boolean) - Method in class loci.formats.in.TopometrixReader
 
close(boolean) - Method in class loci.formats.in.TrestleReader
 
close(boolean) - Method in class loci.formats.in.UBMReader
 
close(boolean) - Method in class loci.formats.in.UnisokuReader
 
close(boolean) - Method in class loci.formats.in.VarianFDFReader
 
close(boolean) - Method in class loci.formats.in.VisitechReader
 
close(boolean) - Method in class loci.formats.in.VolocityClippingReader
 
close(boolean) - Method in class loci.formats.in.VolocityReader
 
close(boolean) - Method in class loci.formats.in.WlzReader
 
close(boolean) - Method in class loci.formats.in.ZeissCZIReader
 
close(boolean) - Method in class loci.formats.in.ZeissLSMReader
 
close(boolean) - Method in class loci.formats.in.ZeissTIFFReader
 
close(boolean) - Method in class loci.formats.in.ZeissZVIReader
 
close(boolean) - Method in class loci.formats.in.ZipReader
 
close() - Method in class loci.formats.Memoizer
 
close(boolean) - Method in class loci.formats.Memoizer
 
close() - Method in interface loci.formats.Memoizer.Deser
 
close() - Method in class loci.formats.Memoizer.KryoDeser
 
close(boolean) - Method in class loci.formats.MinMaxCalculator
 
close() - Method in class loci.formats.out.APNGWriter
 
close() - Method in class loci.formats.out.AVIWriter
 
close() - Method in class loci.formats.out.ICSWriter
 
close() - Method in class loci.formats.out.JavaWriter
 
close() - Method in class loci.formats.out.LegacyQTWriter
 
close() - Method in class loci.formats.out.OMETiffWriter
 
close() - Method in class loci.formats.out.OMEXMLWriter
 
close() - Method in class loci.formats.out.QTWriter
 
close() - Method in class loci.formats.out.TiffWriter
 
close() - Method in class loci.formats.out.WlzWriter
 
close(boolean) - Method in class loci.formats.ReaderWrapper
 
close() - Method in class loci.formats.ReaderWrapper
 
close() - Method in interface loci.formats.services.JPEGTurboService
 
close() - Method in class loci.formats.services.JPEGTurboServiceImpl
 
close() - Method in interface loci.formats.services.MDBService
Close the currently initialized file.
close() - Method in class loci.formats.services.MDBServiceImpl
 
close() - Method in interface loci.formats.services.MetakitService
 
close() - Method in class loci.formats.services.MetakitServiceImpl
 
close() - Method in interface loci.formats.services.NetCDFService
Closes and resets the service.
close() - Method in class loci.formats.services.NetCDFServiceImpl
 
close() - Method in interface loci.formats.services.POIService
Close the current POI file system.
close() - Method in class loci.formats.services.POIServiceImpl
 
close() - Method in interface loci.formats.services.WlzService
Closes the file.
close() - Method in class loci.formats.services.WlzServiceImpl
 
close() - Method in class loci.formats.tiff.OnDemandLongArray
 
close() - Method in class loci.formats.WriterWrapper
 
close(boolean) - Method in class loci.ome.io.OMEReader
 
close() - Method in class loci.ome.io.OMEReader
 
close(boolean) - Method in class loci.ome.io.OmeroReader
 
close() - Method in class loci.ome.io.OMEWriter
 
close() - Method in class loci.plugins.config.TextAreaWriter
Closing a TextAreaWriter does nothing.
close() - Method in class loci.plugins.macro.LociFunctions
 
close() - Method in class loci.plugins.util.VirtualImagePlus
 
close() - Method in class loci.plugins.util.VirtualReader
 
close() - Method in class loci.poi.poifs.filesystem.DocumentInputStream
Closes this input stream and releases any system resources associated with the stream.
close() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream
Closes this output stream and releases any system resources associated with this stream.
close() - Method in class loci.poi.util.BlockingInputStream
 
close() - Method in class loci.tests.testng.FormatReaderTest
 
close() - Method in class mdbtools.examples.MemoryRandomAccess
 
close() - Method in class mdbtools.jdbc2.File
 
close() - Method in class mdbtools.libmdb.MdbFile
 
close() - Method in class mdbtools.libmdb.MdbHandle
 
close() - Method in interface mdbtools.publicapi.RandomAccess
 
close() - Method in class ome.metakit.MetakitReader
Close the reader and release any resources in use.
close() - Method in class ome.scifio.io.ByteArrayHandle
 
close() - Method in class ome.scifio.io.CBZip2InputStream
 
close() - Method in class ome.scifio.io.FileHandle
 
close() - Method in interface ome.scifio.io.IRandomAccess
Closes this random access stream and releases any system resources associated with the stream.
close() - Method in class ome.scifio.io.NIOFileHandle
 
close() - Method in class ome.scifio.io.NIOInputStream
Closes the streams.
close() - Method in class ome.scifio.io.RandomAccessInputStream
Closes the streams.
close() - Method in class ome.scifio.io.RandomAccessOutputStream
 
close() - Method in class ome.scifio.io.StreamHandle
 
close() - Method in class ome.scifio.io.ZipHandle
 
CLOSED_CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty
 
CLOSED_POLYGON - Static variable in class loci.poi.ddf.EscherShapePathProperty
 
closeFile() - Method in class loci.formats.tools.MakeDatasetStructureTable
Close the output file.
closeFileOnly() - Method in class loci.plugins.macro.LociFunctions
 
cm - Variable in class loci.formats.FormatWriter
Default color model.
COBOL - Static variable in class loci.common.DateTools
 
COBOL - Static variable in class ome.scifio.common.DateTools
 
COBOL_EPOCH - Static variable in class loci.common.DateTools
 
COBOL_EPOCH - Static variable in class ome.scifio.common.DateTools
 
coc - Variable in class jj2000.j2k.codestream.HeaderInfo
Reference to the COC marker segments found in main and first tile-part header.
COC - Static variable in interface jj2000.j2k.codestream.Markers
Coding style component (COC): 0xFF53
cod - Variable in class jj2000.j2k.codestream.HeaderInfo
Reference to the COD marker segments found in main and first tile-part header.
COD - Static variable in interface jj2000.j2k.codestream.Markers
Coding style default (COD): 0xFF52
codeBlockSize - Variable in class loci.formats.codec.JPEG2000CodecOptions
The maximum code-block size to use per tile-component as it would be provided to: J2KImageWriteParam.setCodeBlockSize(int[]) (WRITE).
Codec - Interface in loci.formats.codec
This class is an interface for any kind of compression or decompression.
codec - Variable in class loci.formats.out.LegacyQTWriter
The codec to use.
codec - Variable in class loci.formats.out.QTWriter
The codec to use.
CODEC_ANIMATION - Static variable in class loci.formats.out.QTWriter
Value indicating Animation codec.
CODEC_CINEPAK - Static variable in class loci.formats.out.QTWriter
Value indicating Cinepak codec.
CODEC_H_263 - Static variable in class loci.formats.out.QTWriter
Value indicating H.263 codec.
CODEC_MOTION_JPEG_B - Static variable in class loci.formats.out.QTWriter
Value indicating Motion JPEG-B codec.
CODEC_MPEG_4 - Static variable in class loci.formats.out.QTWriter
Value indicating MPEG-4 codec.
CODEC_RAW - Static variable in class loci.formats.out.QTWriter
Value indicating Raw codec.
CODEC_SORENSON - Static variable in class loci.formats.out.QTWriter
Value indicating Sorenson codec.
CODEC_SORENSON_3 - Static variable in class loci.formats.out.QTWriter
Value indicating Sorenson 3 codec.
CodecOptions - Class in loci.formats.codec
Options for compressing and decompressing data.
CodecOptions() - Constructor for class loci.formats.codec.CodecOptions
Construct a new CodecOptions.
CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.CodecOptions
Construct a new CodecOptions using the given CodecOptions.
CodedCBlk - Class in jj2000.j2k.entropy
This is the generic class to store coded (compressed) code-block.
CodedCBlk() - Constructor for class jj2000.j2k.entropy.CodedCBlk
Creates a new CodedCBlk object wit the default values and without allocating any space for its members.
CodedCBlk(int, int, int, byte[]) - Constructor for class jj2000.j2k.entropy.CodedCBlk
Creates a new CodedCBlk object with the specified values.
CodedCBlkDataSrcDec - Interface in jj2000.j2k.entropy.decoder
This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.
CodedCBlkDataSrcEnc - Interface in jj2000.j2k.entropy.encoder
This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.
CodedEnum - Interface in loci.common.enumeration
A legacy wrapper interface for ome.scifio.enumeration.CodedEnum Source code: Trac, Gitweb
CodedEnum - Interface in ome.scifio.enumeration
Enumeration which is coded.
CodedEnumAdapter - Class in loci.common.adapter
As interfaces can not contain implementation, this class manages interface-level delegation between CodedEnum and CodedEnum
CodedEnumAdapter() - Constructor for class loci.common.adapter.CodedEnumAdapter
 
CodedEnumAdapter.LegacyWrapper - Class in loci.common.adapter
This class can be used to wrap loci.common.enumeration.CodedEnum objects and be passed to API expecting an ome.scifio.enumeration.CodedEnum object.
CodedEnumAdapter.LegacyWrapper(CodedEnum) - Constructor for class loci.common.adapter.CodedEnumAdapter.LegacyWrapper
 
CodedEnumAdapter.ModernWrapper - Class in loci.common.adapter
This class can be used to wrap ome.scifio.enumeration.CodedEnum objects and be passed to API expecting a loci.common.enumeration.CodedEnum object.
CodedEnumAdapter.ModernWrapper(CodedEnum) - Constructor for class loci.common.adapter.CodedEnumAdapter.ModernWrapper
 
CODEPAGE - Static variable in class loci.poi.hssf.record.CodepageRecord
the likely correct value for CODEPAGE (at least for US versions).
CODEPAGE - Static variable in class loci.poi.hssf.record.InterfaceHdrRecord
suggested (and probably correct) default
CodepageRecord - Class in loci.poi.hssf.record
Title: Codepage Record
CodepageRecord() - Constructor for class loci.poi.hssf.record.CodepageRecord
 
CodepageRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CodepageRecord
Constructs a CodepageRecord and sets its fields appropriately
codepageToEncoding(int) - Static method in class loci.poi.hpsf.VariantSupport
Turns a codepage number into the equivalent character encoding's name.
CodestreamManipulator - Class in jj2000.j2k.util
This class takes a legal JPEG 2000 codestream and performs some manipulation on it.
CodestreamManipulator(File, int, int, boolean, boolean, boolean, boolean) - Constructor for class jj2000.j2k.util.CodestreamManipulator
Instantiates a codestream manipulator..
CodestreamWriter - Class in jj2000.j2k.codestream.writer
This is the abstract class for writing to a bit stream.
CodestreamWriter(int) - Constructor for class jj2000.j2k.codestream.writer.CodestreamWriter
Allocates this object and initializes the maximum numner of bytes.
codeSymbol(int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
This function performs the arithmetic encoding of one symbol.
codeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
This function performs the arithmetic encoding of several symbols together.
col_fixed_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
 
col_from - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion
upper right hand corner col
col_num - Variable in class mdbtools.libmdb.MdbColumn
 
col_num_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
 
col_prec - Variable in class mdbtools.libmdb.MdbColumn
 
col_scale - Variable in class mdbtools.libmdb.MdbColumn
 
col_size - Variable in class mdbtools.libmdb.MdbColumn
 
col_size_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
 
col_to - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion
lower right hand corner col
col_type - Variable in class mdbtools.libmdb.MdbColumn
 
colBreaks - Variable in class loci.poi.hssf.model.Sheet
 
colCount - Variable in class loci.formats.in.BaseZeissReader
 
collapseColInfoRecords(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
collapseColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
collapseRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
Color - Class in ome.xml.model.primitives
Primitive type that represents an RGBA color.
Color(Integer) - Constructor for class ome.xml.model.primitives.Color
 
Color(int, int, int, int) - Constructor for class ome.xml.model.primitives.Color
 
COLOR_MAP - Static variable in class loci.formats.tiff.IFD
 
COLOR_MODE_COLORIZED - Static variable in class loci.plugins.in.ImporterOptions
 
COLOR_MODE_COMPOSITE - Static variable in class loci.plugins.in.ImporterOptions
 
COLOR_MODE_CUSTOM - Static variable in class loci.plugins.in.ImporterOptions
 
COLOR_MODE_DEFAULT - Static variable in class loci.plugins.in.ImporterOptions
 
COLOR_MODE_GRAYSCALE - Static variable in class loci.plugins.in.ImporterOptions
 
COLOR_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont
normal type of black color.
COLOR_RED - Static variable in class loci.poi.hssf.usermodel.HSSFFont
Dark Red color
COLOR_SPACE - Static variable in class loci.formats.tiff.IFD
 
COLOR_SPACE_SRGB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ColorSpace" tag.
COLOR_SPACE_UNCALIBRATED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ColorSpace" tag.
colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
A TIFFColorConverter object describing the color space of the encoded pixel data, or null.
colorCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
ColorDialog - Class in loci.plugins.in
Bio-Formats Importer custom color chooser dialog box.
ColorDialog(ImportProcess) - Constructor for class loci.plugins.in.ColorDialog
 
Colorizer - Class in loci.plugins.in
Logic for colorizing images.
Colorizer(ImportProcess) - Constructor for class loci.plugins.in.Colorizer
 
colorMap - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The value of the ColorMap tag.
colorModeChoice - Variable in class loci.plugins.in.MainDialog
 
colorModel - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
The image's ColorModel.
colorModel - Variable in class loci.formats.codec.CodecOptions
Color model to use when constructing an image (WRITE).
colorResolution - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
colorsImportant - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
colorSpace - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
ColorSpecificationBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is defined to represent a Color Specification Box of JPEG JP2 file format.
ColorSpecificationBox(byte, byte, byte, int, ICC_Profile) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
Creates a ColorSpecificationBox from the provided data elements.
ColorSpecificationBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
Creates a ColorSpecificationBox from the provided byte array.
ColorSpecificationBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
Constructs a ColorSpecificationBox based on the provided org.w3c.dom.Node.
colorsUsed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
colorTableSizes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
COLOUR_SPECIFICATION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
colT - Variable in class loci.formats.in.SDTInfo
 
column - Variable in class loci.formats.tools.AmiraParameters
 
Column - Class in ome.metakit
Class representing a column in a Metakit database file.
Column(String) - Constructor for class ome.metakit.Column
Construct a new column from the given string representation.
ColumnComparator - Class in mdbtools.dbengine
Compare the values from a column in two rows
ColumnComparator() - Constructor for class mdbtools.dbengine.ColumnComparator
 
ColumnInfoRecord - Class in loci.poi.hssf.record
Title: ColumnInfo Record
ColumnInfoRecord() - Constructor for class loci.poi.hssf.record.ColumnInfoRecord
 
ColumnInfoRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ColumnInfoRecord
Constructs a ColumnInfo record and sets its fields appropriately
ColumnInfoRecordsAggregate - Class in loci.poi.hssf.record.aggregates
 
ColumnInfoRecordsAggregate() - Constructor for class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
ColumnMap - Class in ome.metakit
Class representating a column mapping in a Metakit database file.
ColumnMap(Column, RandomAccessInputStream, int) - Constructor for class ome.metakit.ColumnMap
 
columns - Variable in class loci.poi.hssf.model.Sheet
 
columns - Variable in class mdbtools.libmdb.MdbTableDef
 
ColumnTest - Class in mdbtools.tests
 
ColumnTest() - Constructor for class mdbtools.tests.ColumnTest
 
com - Variable in class jj2000.j2k.codestream.HeaderInfo
Reference to the COM marker segments found in main and tile-part headers.
COM - Static variable in interface jj2000.j2k.codestream.Markers
Comment (COM): 0xFF64
com.luratech.lwf - package com.luratech.lwf
 
com.sun.media.imageio.plugins.bmp - package com.sun.media.imageio.plugins.bmp
Package containing the public classes used by the Sun BMP plug-in for the Image I/O Framework.
com.sun.media.imageio.plugins.jpeg2000 - package com.sun.media.imageio.plugins.jpeg2000
Package containing the public classes used by the Sun JPEG 2000 plug-in for the Image I/O Framework.
com.sun.media.imageio.plugins.pnm - package com.sun.media.imageio.plugins.pnm
Package containing the public classes used by the Sun PNM plug-in for the Image I/O Framework.
com.sun.media.imageio.plugins.tiff - package com.sun.media.imageio.plugins.tiff
Package containing the public classes used by the TIFF plug-in for the Image I/O Framework.
com.sun.media.imageio.stream - package com.sun.media.imageio.stream
Provides ImageInputStream and ImageOutputStream classes for use with the Java Image I/O Framework.
com.sun.media.imageioimpl.common - package com.sun.media.imageioimpl.common
 
com.sun.media.imageioimpl.plugins.bmp - package com.sun.media.imageioimpl.plugins.bmp
 
com.sun.media.imageioimpl.plugins.clib - package com.sun.media.imageioimpl.plugins.clib
 
com.sun.media.imageioimpl.plugins.gif - package com.sun.media.imageioimpl.plugins.gif
 
com.sun.media.imageioimpl.plugins.jpeg - package com.sun.media.imageioimpl.plugins.jpeg
 
com.sun.media.imageioimpl.plugins.jpeg2000 - package com.sun.media.imageioimpl.plugins.jpeg2000
 
com.sun.media.imageioimpl.plugins.pcx - package com.sun.media.imageioimpl.plugins.pcx
 
com.sun.media.imageioimpl.plugins.png - package com.sun.media.imageioimpl.plugins.png
 
com.sun.media.imageioimpl.plugins.pnm - package com.sun.media.imageioimpl.plugins.pnm
 
com.sun.media.imageioimpl.plugins.raw - package com.sun.media.imageioimpl.plugins.raw
 
com.sun.media.imageioimpl.plugins.tiff - package com.sun.media.imageioimpl.plugins.tiff
 
com.sun.media.imageioimpl.plugins.wbmp - package com.sun.media.imageioimpl.plugins.wbmp
 
com.sun.media.imageioimpl.stream - package com.sun.media.imageioimpl.stream
 
com.sun.media.jai.imageioimpl - package com.sun.media.jai.imageioimpl
 
com.sun.media.jai.operator - package com.sun.media.jai.operator
Provides JAI operations which read and write images using the Java Image I/O Framework.
ComboFileFilter - Class in loci.formats.gui
A file filter that recognizes files from a union of other filters.
ComboFileFilter(FileFilter[], String) - Constructor for class loci.formats.gui.ComboFileFilter
Constructs a new filter from a list of other filters.
CommentAnnotation - Class in ome.xml.model
 
CommentAnnotation() - Constructor for class ome.xml.model.CommentAnnotation
Default constructor.
CommentAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.CommentAnnotation
Constructs CommentAnnotation recursively from an XML DOM tree.
CommentAnnotation(CommentAnnotation) - Constructor for class ome.xml.model.CommentAnnotation
Copy constructor.
comments - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
comments - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
CommentShape - Class in loci.poi.hssf.model
Represents a cell comment.
CommentShape(HSSFComment, int) - Constructor for class loci.poi.hssf.model.CommentShape
Creates the low-level records for a comment.
commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
Writes the header data to the bit stream, if it has not been already done.
commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
Writes the header data in the codestream and actualize ndata with the header length.
CommonObjectDataSubRecord - Class in loci.poi.hssf.record
The common object data record is used to store all common preferences for an excel object.
CommonObjectDataSubRecord() - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord
 
CommonObjectDataSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord
Constructs a CommonObjectData record and sets its fields appropriately.
CommonsLogger - Class in loci.poi.util
A logger class that strives to make it as easy as possible for developers to write log calls, while simultaneously making those calls as cheap as possible by performing lazy evaluation of the log message.
CommonsLogger() - Constructor for class loci.poi.util.CommonsLogger
 
comp - Variable in class jj2000.j2k.roi.encoder.ROI
The components for which the ROI is relevant
COMP_POS_RES_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType
The bit stream is Component/Position/Resolution/Layer progressive : 4
COMPANION_SUFFIXES - Static variable in class loci.formats.in.TiffReader
 
compare(Object, Object) - Method in class loci.formats.cache.CacheStrategy
Default comparator orders dimensional positions based on distance from the current position, taking into account axis priorities and planar ordering.
compare(Object, Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator
compare method.
compareTo(Object) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Compares this TIFFField with another TIFFField by comparing the tags.
compareTo(Object) - Method in class loci.formats.gui.ComboFileFilter
Compares two FileFilter objects alphanumerically.
compareTo(Object) - Method in class loci.formats.gui.ExtensionFileFilter
Compares two FileFilter objects alphanumerically.
compareTo(Object) - Method in class loci.formats.gui.FormatFileFilter
Compares two FileFilter objects alphanumerically.
compareTo(Object) - Method in class loci.formats.gui.NoExtensionFileFilter
Compares two FileFilter objects alphanumerically.
compareTo(Object) - Method in class loci.formats.tiff.TiffIFDEntry
 
compareTo(TiffRational) - Method in class loci.formats.tiff.TiffRational
Compares this object with the specified object for order.
compareTo(Object) - Method in class loci.plugins.config.FormatEntry
 
compareTo(Object) - Method in class loci.plugins.config.LibraryEntry
 
compareTo(ThumbLoader.SeriesInfo) - Method in class loci.plugins.in.ThumbLoader.SeriesInfo
 
compareTo(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
compareTo(Object) - Method in class loci.poi.hssf.record.BlankRecord
 
compareTo(Object) - Method in class loci.poi.hssf.record.BoolErrRecord
 
compareTo(Object) - Method in class loci.poi.hssf.record.FormulaRecord
 
compareTo(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
compareTo(Object) - Method in class loci.poi.hssf.record.NumberRecord
 
compareTo(Object) - Method in class loci.poi.hssf.record.RowRecord
 
compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString
 
compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun
 
compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
Compares one rich text string to another.
compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow
 
compareTo(Region) - Method in class loci.poi.hssf.util.Region
Compares that the given region is the same less than or greater than this region.
compareTo(Object) - Method in class loci.poi.hssf.util.Region
 
compDef - Variable in class jj2000.j2k.ModuleSpec
The default value for each component.
COMPLEX - Static variable in class loci.poi.ddf.EscherShapePathProperty
 
COMPONENT_MAPPING_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
ComponentMappingBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is defined to represent a Color Specification Box of JPEG JP2 file format.
ComponentMappingBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
Constructs a ComponentMappingBox from the provided content byte array.
ComponentMappingBox(short[], byte[], byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
Constructs a ComponentMappingBox from the provided component mapping.
ComponentMappingBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
Constructs a ComponentMappingBox based on the provided org.w3c.dom.Node.
COMPONENTS_CONFIGURATION - Static variable in class loci.formats.tiff.IFD
 
COMPONENTS_CONFIGURATION_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_CB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_CR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_DOES_NOT_EXIST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_G - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_R - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_Y - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ComponentsConfiguration" tag.
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Composes the content byte array from the data elements.
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
 
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
 
composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
Append newString to the end of oldString.
composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
Append newString to the end of oldString.
compress(byte[], int, int) - Method in class com.sun.media.imageioimpl.common.LZWCompressor
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.Base64Codec
 
compress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec
2D data block encoding default implementation.
compress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec
Compresses a block of data.
compress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec
Compresses a block of data.
compress(byte[], CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec
The CodecOptions parameter should have the following fields set: width height bitsPerSample channels interleaved littleEndian lossless
compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEGCodec
The CodecOptions parameter should have the following fields set: width height channels bitsPerSample interleaved littleEndian signed
compress(byte[], CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZOCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZWCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.MJPBCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSRLECodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSVideoCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.NikonCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.PackbitsCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.RPZACodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.TargaRLECodec
 
compress(byte[], CodecOptions) - Method in class loci.formats.codec.ZlibCodec
 
compress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression
Encodes a strip of data.
compress(byte[]) - Static method in class loci.poi.ddf.EscherBlipWMFRecord
Compress the contents of the provided array
compressBuffer(int, byte[], int, int, int, int) - Method in class loci.formats.out.JPEG2000Writer
Compresses the buffer.
CompressDecompressTest - Class in loci.tests.testng
Tests the various codec used to compress and decompress data.
CompressDecompressTest() - Constructor for class loci.tests.testng.CompressDecompressTest
 
compressed - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
 
COMPRESSED_BITS_PER_PIXEL - Static variable in class loci.formats.tiff.IFD
 
compression - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The value of the Compression tag.
compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
compression - Variable in class loci.formats.FormatWriter
Current compression type.
COMPRESSION - Static variable in class loci.formats.tiff.IFD
 
Compression - Enum in ome.xml.model.enums
 
COMPRESSION_CCITT_RLE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
COMPRESSION_CCITT_T_4 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
COMPRESSION_CCITT_T_6 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
COMPRESSION_DEFLATE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
COMPRESSION_GZIP - Static variable in class loci.formats.in.LiFlimReader
 
COMPRESSION_J2K - Static variable in class loci.formats.out.TiffWriter
 
COMPRESSION_J2K_LOSSY - Static variable in class loci.formats.out.TiffWriter
 
COMPRESSION_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
COMPRESSION_JPEG - Static variable in class loci.formats.out.TiffWriter
 
COMPRESSION_KEY - Static variable in class loci.formats.in.LiFlimReader
 
COMPRESSION_LZW - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
COMPRESSION_LZW - Static variable in class loci.formats.out.TiffWriter
 
COMPRESSION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
COMPRESSION_NONE - Static variable in class loci.formats.in.LiFlimReader
 
COMPRESSION_OLD_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
COMPRESSION_PACKBITS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
COMPRESSION_SUFFIXES - Static variable in class loci.formats.FormatHandler
Suffixes for supported compression types.
COMPRESSION_UNCOMPRESSED - Static variable in class loci.formats.out.TiffWriter
 
COMPRESSION_ZLIB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "Compression" tag.
CompressionEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for Compression.
CompressionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CompressionEnumHandler
 
compressionNumbers - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
Compression tag values for known compression types.
compressionTagValue - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
The value to be assigned to the TIFF Compression tag in the TIFF image metadata.
compressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
The name of the compression type supported by this compressor.
CompressionType - Enum in loci.formats.codec
An enumeration of compression types.
compressionTypeNames - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
compressionTypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
Known TIFF compression types.
compressionTypes - Variable in class loci.formats.FormatWriter
Available compression types.
compressionTypes - Variable in class loci.formats.ImageWriter
Compression types for all file format writers.
CompTransfSpec - Class in jj2000.j2k.image
This class extends ModuleSpec class in order to hold tile specifications for component transformation
CompTransfSpec(int, int, byte) - Constructor for class jj2000.j2k.image.CompTransfSpec
Constructs an empty 'CompTransfSpec' with specified number of tile and components.
computeAxisLengths() - Method in class loci.formats.FileStitcher
Computes axis length arrays, and total axis lengths.
computeIndices(int) - Method in class loci.formats.FileStitcher
Gets the file index, and image index into that file, corresponding to the given global image index.
computeRegionsWrapper(ImageReadParam, boolean, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
Wrapper for the protected method computeRegions.
computeRegionsWrapper(ImageReadParam, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
Wrapper for the protected method computeRegions.
ConCat - Class in mdbtools.dbengine.functions
 
ConCat() - Constructor for class mdbtools.dbengine.functions.ConCat
 
concatenate(List<ImagePlus>) - Method in class loci.plugins.in.Concatenator
Concatenates the list of images as appropriate.
concatenateBox - Variable in class loci.plugins.in.MainDialog
 
Concatenator - Class in loci.plugins.in
Logic for concatenating multiple images together.
Concatenator() - Constructor for class loci.plugins.in.Concatenator
 
ConcatPtg - Class in loci.poi.hssf.record.formula
 
ConcatPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ConcatPtg
 
ConcatPtg() - Constructor for class loci.poi.hssf.record.formula.ConcatPtg
 
CONCURRENCY_PROP_NAME - Static variable in class jj2000.j2k.util.ThreadPool
The name of the property that sets the concurrency level: jj2000.j2k.util.ThreadPool.concurrency
Condition - Class in mdbtools.dbengine.sql
 
Condition() - Constructor for class mdbtools.dbengine.sql.Condition
 
configTree - Static variable in class loci.tests.testng.FormatReaderTest
Configuration tree structure containing dataset metadata.
configTree - Static variable in class loci.tests.testng.FormatWriterTest
Configuration tree structure containing dataset metadata.
Configuration - Class in loci.tests.testng
Source code: Trac, Gitweb
Configuration(String, String) - Constructor for class loci.tests.testng.Configuration
 
Configuration(IFormatReader, String) - Constructor for class loci.tests.testng.Configuration
 
ConfigurationTree - Class in loci.tests.testng
Stores configuration data about files in a directory structure.
ConfigurationTree(String) - Constructor for class loci.tests.testng.ConfigurationTree
Creates a new configuration tree rooted at the given directory in the file system.
ConfigWindow - Class in loci.plugins.config
A window for managing configuration of the LOCI plugins.
ConfigWindow() - Constructor for class loci.plugins.config.ConfigWindow
 
Constants - Class in loci.common
Legacy delegator class for ome.scifio.common.Constants.
Constants() - Constructor for class loci.common.Constants
 
Constants - Class in loci.poi.hpsf
Defines constants of general use.
Constants() - Constructor for class loci.poi.hpsf.Constants
 
Constants - Class in mdbtools.libmdb
copied from mdbtools.h
Constants() - Constructor for class mdbtools.libmdb.Constants
 
Constants - Class in ome.scifio.common
Constants that are used within many classes in loci.common.
Constants() - Constructor for class ome.scifio.common.Constants
 
construct(int, List) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
constructDialog() - Method in class loci.plugins.in.ColorDialog
 
constructDialog() - Method in class loci.plugins.in.CropDialog
 
constructDialog() - Method in class loci.plugins.in.FilePatternDialog
 
constructDialog() - Method in class loci.plugins.in.IdDialog
 
constructDialog() - Method in class loci.plugins.in.ImporterDialog
 
constructDialog() - Method in class loci.plugins.in.LocationDialog
 
constructDialog() - Method in class loci.plugins.in.MainDialog
 
constructDialog() - Method in class loci.plugins.in.MemoryDialog
 
constructDialog() - Method in class loci.plugins.in.RangeDialog
 
constructDialog() - Method in class loci.plugins.in.SeriesDialog
 
constructDialog() - Method in class loci.plugins.in.SwapDialog
 
constructDialog() - Method in class loci.plugins.in.UpgradeDialog
 
constructImage(int, int, int, int, boolean, boolean, DataBuffer) - Static method in class loci.formats.gui.AWTImageTools
Creates an image with the given DataBuffer.
constructImage(int, int, int, int, boolean, boolean, DataBuffer, ColorModel) - Static method in class loci.formats.gui.AWTImageTools
Creates an image with the given DataBuffer.
constructLoader() - Static method in class loci.formats.gui.LegacyQTTools
 
contains(Object) - Method in class loci.common.IniList
 
contains(int, short) - Method in class loci.poi.hssf.util.Region
Answers: "is the row/column inside this range?"
contains(double) - Method in class loci.poi.util.DoubleList
Returns true if this list contains the specified element.
contains(int) - Method in class loci.poi.util.IntList
Returns true if this list contains the specified element.
contains(short) - Method in class loci.poi.util.ShortList
Returns true if this list contains the specified element.
containsAll(Collection<?>) - Method in class loci.common.IniList
 
containsAll(DoubleList) - Method in class loci.poi.util.DoubleList
Returns true if this list contains all of the elements of the specified collection.
containsAll(IntList) - Method in class loci.poi.util.IntList
Returns true if this list contains all of the elements of the specified collection.
containsAll(ShortList) - Method in class loci.poi.util.ShortList
Returns true if this list contains all of the elements of the specified collection.
containsKey(Object) - Method in class loci.common.IniTable
 
containsKey(Object) - Method in class loci.poi.util.BinaryTree
Returns true if this map contains a mapping for the specified key.
containsPoint(int, int) - Method in class ome.scifio.common.Region
Returns true if the point specified by the given X and Y coordinates is contained within this region.
containsTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Determines whether a TIFF field with the given tag number is contained in this directory.
containsValue(int[], int) - Static method in class loci.common.DataTools
Returns true if the given value is contained in the given array.
containsValue(Object) - Method in class loci.common.IniTable
 
containsValue(Object) - Method in class loci.poi.util.BinaryTree
Returns true if this map maps one or more keys to the specified value.
containsValue(int[], int) - Static method in class ome.scifio.common.DataTools
Returns true if the given value is contained in the given array.
CONTIGUOUS_CODESTREAM_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
ContinueRecord - Class in loci.poi.hssf.record
Title: Continue Record - Helper class used primarily for SST Records
ContinueRecord() - Constructor for class loci.poi.hssf.record.ContinueRecord
default constructor
ContinueRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ContinueRecord
Main constructor -- kinda dummy because we don't validate or fill fields
CONTRAST - Static variable in class loci.formats.tiff.IFD
 
CONTRAST_HARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "Contrast" tag.
CONTRAST_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "Contrast" tag.
CONTRAST_SOFT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "Contrast" tag.
ContrastMethod - Enum in ome.xml.model.enums
 
ContrastMethodEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for ContrastMethod.
ContrastMethodEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ContrastMethodEnumHandler
 
ControlPtg - Class in loci.poi.hssf.record.formula
 
ControlPtg() - Constructor for class loci.poi.hssf.record.formula.ControlPtg
 
ConversionTest - Class in loci.tests.testng
 
ConversionTest() - Constructor for class loci.tests.testng.ConversionTest
 
convert(String, String) - Static method in class loci.formats.FormatTools
Convenience method for converting the specified input file to the specified output file.
convert(IFormatReader, IFormatWriter, String) - Static method in class loci.formats.FormatTools
Convenience method for writing all of the images and metadata obtained from the specified IFormatReader into the specified IFormatWriter.
convert(long, RandomAccessInputStream, int, int, int) - Static method in class loci.poi.poifs.storage.DocumentBlock
convert a single long array into an array of DocumentBlock instances
convert(byte[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock
convert a single long array into an array of SmallDocumentBlock instances
convert(BlockWritable[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock
Factory for creating SmallDocumentBlocks from DocumentBlocks
ConvertAnchor - Class in loci.poi.hssf.model
$Id: ConvertAnchor.java 562536 2007-08-03 18:09:41Z yegor $
ConvertAnchor() - Constructor for class loci.poi.hssf.model.ConvertAnchor
 
convertDate(long, int) - Static method in class loci.common.DateTools
Converts the given timestamp into an ISO8601 date.
convertDate(long, int, String) - Static method in class loci.common.DateTools
Converts the given timestamp into a date string with the given format.
convertDate(long, int, String, boolean) - Static method in class loci.common.DateTools
Converts the given timestamp into a date string with the given format.
convertDate(long, int) - Static method in class ome.scifio.common.DateTools
Converts the given timestamp into an ISO8601 date.
convertDate(long, int, String) - Static method in class ome.scifio.common.DateTools
Converts the given timestamp into a date string with the given format.
convertDate(long, int, String, boolean) - Static method in class ome.scifio.common.DateTools
Converts the given timestamp into a date string with the given format.
convertFactor - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
The value by which the absolute value of the data has to be divided in order to get the real absolute value.
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
Creates a default image metadata object and merges in the supplied metadata.
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
 
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
 
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
 
convertMetadata(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter
Copies information from a metadata retrieval object (source) into a metadata store (destination).
convertMetadata(String, MetadataStore) - Method in interface loci.formats.services.OMEXMLService
Converts information from an OME-XML string (source) into a metadata store (destination).
convertMetadata(MetadataRetrieve, MetadataStore) - Method in interface loci.formats.services.OMEXMLService
Copies information from a metadata retrieval object (source) into a metadata store (destination).
convertMetadata(String, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
 
convertMetadata(MetadataRetrieve, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
 
convertObjectToString(Object) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Converts the provided object to String
convertRenderedImage(RenderedImage) - Static method in class loci.formats.gui.AWTImageTools
Converts a java.awt.image.RenderedImage into a java.awt.image.BufferedImage.
convertSharedFormulaRecord(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord
Creates a non shared formula from the shared formula counter part
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
Creates a default stream metadata object and merges in the supplied metadata.
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
 
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
 
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
 
convertToByte(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
 
convertToExpMantissa(float) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer
Converts the floating point value to its exponent-mantissa representation.
convertToFloat() - Method in class loci.plugins.util.RecordedImageProcessor
 
convertToRGB() - Method in class loci.plugins.util.RecordedImageProcessor
 
convertToShort(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
 
convolve(float[], int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
convolve3x3(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
 
coordinates - Variable in class loci.formats.in.BaseZeissReader
 
CoordInfo - Class in jj2000.j2k.codestream
This class is used to store the coordinates of objects such as code-blocks or precincts.
CoordInfo(int, int, int, int) - Constructor for class jj2000.j2k.codestream.CoordInfo
Constructor.
CoordInfo() - Constructor for class jj2000.j2k.codestream.CoordInfo
Empty contructor
copy(byte[], int, int, byte[], int) - Static method in class loci.poi.hpsf.Util
Copies a part of a byte array into another byte array.
copy(byte[], int, int) - Static method in class loci.poi.hpsf.Util
Copies bytes from a source byte array into a new byte array.
copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
copyBinDataList() - Method in class ome.xml.model.Mask
 
copyBinDataList() - Method in class ome.xml.model.Pixels
 
copyBits(ImageProcessor, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
copyBooleanAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
copyChannelList() - Method in class ome.xml.model.Pixels
 
copyCommentAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Copies an arbitrary rectangular region of the RenderedImage into a caller-supplied WritableRaster.
copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
copyDatasetList() - Method in class ome.xml.model.OME
 
copyDetectorList() - Method in class ome.xml.model.Instrument
 
copyDichroicList() - Method in class ome.xml.model.Instrument
 
copyDoubleAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
copyExperimenterGroupList() - Method in class ome.xml.model.OME
 
copyExperimenterList() - Method in class ome.xml.model.OME
 
copyExperimentList() - Method in class ome.xml.model.OME
 
copyFileAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
copyFilterList() - Method in class ome.xml.model.Instrument
 
copyFilterSetList() - Method in class ome.xml.model.Instrument
 
copyImageList() - Method in class ome.xml.model.OME
 
copyInstrumentList() - Method in class ome.xml.model.OME
 
copyInt(byte[], int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Copies that four bytes of an integer into the byte array.
copyLightSourceList() - Method in class ome.xml.model.Instrument
 
copyLightSourceSettingsList() - Method in class ome.xml.model.MicrobeamManipulation
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Annotation
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Channel
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Dataset
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Experimenter
 
copyLinkedAnnotationList() - Method in class ome.xml.model.ExperimenterGroup
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Image
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Pixels
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Plane
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Plate
 
copyLinkedAnnotationList() - Method in class ome.xml.model.PlateAcquisition
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Project
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Reagent
 
copyLinkedAnnotationList() - Method in class ome.xml.model.ROI
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Screen
 
copyLinkedAnnotationList() - Method in class ome.xml.model.Well
 
copyLinkedAnnotationList() - Method in class ome.xml.model.WellSample
 
copyLinkedChannelList() - Method in class ome.xml.model.Annotation
 
copyLinkedChannelList() - Method in class ome.xml.model.FilterSet
 
copyLinkedDatasetList() - Method in class ome.xml.model.Annotation
 
copyLinkedDatasetList() - Method in class ome.xml.model.Experimenter
 
copyLinkedDatasetList() - Method in class ome.xml.model.ExperimenterGroup
 
copyLinkedDatasetList() - Method in class ome.xml.model.Image
 
copyLinkedDatasetList() - Method in class ome.xml.model.Project
 
copyLinkedEmissionFilterList() - Method in class ome.xml.model.FilterSet
 
copyLinkedEmissionFilterList() - Method in class ome.xml.model.LightPath
 
copyLinkedExcitationFilterList() - Method in class ome.xml.model.FilterSet
 
copyLinkedExcitationFilterList() - Method in class ome.xml.model.LightPath
 
copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Annotation
 
copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Experimenter
 
copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Leader
 
copyLinkedExperimenterList() - Method in class ome.xml.model.Annotation
 
copyLinkedExperimenterList() - Method in class ome.xml.model.ExperimenterGroup
 
copyLinkedExperimentList() - Method in class ome.xml.model.Experimenter
 
copyLinkedFilterSetEmissionFilterList() - Method in class ome.xml.model.Filter
 
copyLinkedFilterSetExcitationFilterList() - Method in class ome.xml.model.Filter
 
copyLinkedFilterSetList() - Method in class ome.xml.model.Dichroic
 
copyLinkedImageList() - Method in class ome.xml.model.Annotation
 
copyLinkedImageList() - Method in class ome.xml.model.Dataset
 
copyLinkedImageList() - Method in class ome.xml.model.Experiment
 
copyLinkedImageList() - Method in class ome.xml.model.Experimenter
 
copyLinkedImageList() - Method in class ome.xml.model.ExperimenterGroup
 
copyLinkedImageList() - Method in class ome.xml.model.Instrument
 
copyLinkedImageList() - Method in class ome.xml.model.MicrobeamManipulation
 
copyLinkedImageList() - Method in class ome.xml.model.ROI
 
copyLinkedLaserList() - Method in class ome.xml.model.Pump
 
copyLinkedLeaderList() - Method in class ome.xml.model.ExperimenterGroup
 
copyLinkedLightPathEmissionFilterList() - Method in class ome.xml.model.Filter
 
copyLinkedLightPathExcitationFilterList() - Method in class ome.xml.model.Filter
 
copyLinkedLightPathList() - Method in class ome.xml.model.Dichroic
 
copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Experimenter
 
copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Image
 
copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.ROI
 
copyLinkedPixelsList() - Method in class ome.xml.model.Annotation
 
copyLinkedPlaneList() - Method in class ome.xml.model.Annotation
 
copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.Annotation
 
copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.WellSample
 
copyLinkedPlateList() - Method in class ome.xml.model.Annotation
 
copyLinkedPlateList() - Method in class ome.xml.model.Screen
 
copyLinkedProjectList() - Method in class ome.xml.model.Annotation
 
copyLinkedProjectList() - Method in class ome.xml.model.Dataset
 
copyLinkedProjectList() - Method in class ome.xml.model.Experimenter
 
copyLinkedProjectList() - Method in class ome.xml.model.ExperimenterGroup
 
copyLinkedReagentList() - Method in class ome.xml.model.Annotation
 
copyLinkedROIList() - Method in class ome.xml.model.Annotation
 
copyLinkedROIList() - Method in class ome.xml.model.Image
 
copyLinkedROIList() - Method in class ome.xml.model.MicrobeamManipulation
 
copyLinkedScreenList() - Method in class ome.xml.model.Annotation
 
copyLinkedScreenList() - Method in class ome.xml.model.Plate
 
copyLinkedWellList() - Method in class ome.xml.model.Annotation
 
copyLinkedWellList() - Method in class ome.xml.model.Reagent
 
copyLinkedWellSampleList() - Method in class ome.xml.model.Annotation
 
copyLinkedWellSampleList() - Method in class ome.xml.model.Image
 
copyLinkedWellSampleList() - Method in class ome.xml.model.PlateAcquisition
 
copyListAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
copyLongAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
copyMicrobeamManipulationList() - Method in class ome.xml.model.Experiment
 
copyNodes(POIFSFileSystem, POIFSFileSystem, List) - Method in class loci.poi.POIDocument
Copies nodes from one POIFS to the other minus the excepts
copyObjectiveList() - Method in class ome.xml.model.Instrument
 
copyPlaneList() - Method in class ome.xml.model.Pixels
 
copyPlateAcquisitionList() - Method in class ome.xml.model.Plate
 
copyPlateList() - Method in class ome.xml.model.OME
 
copyProjectList() - Method in class ome.xml.model.OME
 
copyReagentList() - Method in class ome.xml.model.Screen
 
copyright - Static variable in class jj2000.j2k.JJ2KInfo
The copyright message string.
COPYRIGHT - Static variable in class loci.formats.tiff.IFD
 
copyROIList() - Method in class ome.xml.model.OME
 
copyScaled(BufferedImage, BufferedImage, Object) - Static method in class loci.formats.gui.AWTImageTools
Copies the source image into the target, applying scaling.
copyScreenList() - Method in class ome.xml.model.OME
 
copyShapeList() - Method in class ome.xml.model.Union
 
copyTagAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
copyTermAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
copyTiffDataList() - Method in class ome.xml.model.Pixels
 
copyTimestampAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
copyWellList() - Method in class ome.xml.model.Plate
 
copyWellSampleList() - Method in class ome.xml.model.Well
 
copyXMLAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
 
core - Variable in class loci.formats.FormatReader
Core metadata values.
coreIndex - Variable in class loci.formats.FormatReader
The number of the current series.
coreIndexToSeries(int) - Method in class loci.formats.FileStitcher
 
coreIndexToSeries(int) - Method in class loci.formats.FormatReader
 
coreIndexToSeries(int) - Method in interface loci.formats.IFormatReader
Returns the series corresponding to the specified core index.
coreIndexToSeries(int) - Method in class loci.formats.ImageReader
 
coreIndexToSeries(int) - Method in class loci.formats.ReaderWrapper
 
CoreMetadata - Class in loci.formats
Encompasses core metadata values.
CoreMetadata() - Constructor for class loci.formats.CoreMetadata
 
CoreMetadata(IFormatReader, int) - Constructor for class loci.formats.CoreMetadata
 
CoreMetadata(CoreMetadata) - Constructor for class loci.formats.CoreMetadata
 
Correction - Enum in ome.xml.model.enums
 
CorrectionEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for Correction.
CorrectionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CorrectionEnumHandler
 
CorruptedCodestreamException - Exception in jj2000.j2k.codestream
Thsi exception is thrown whenever an illegal value is read from a bit stream.
CorruptedCodestreamException() - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException
Constructs a new CorruptedCodestreamException exception with no detail message.
CorruptedCodestreamException(String) - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException
Constructs a new CorruptedCodestreamException exception with the specified detail message.
cortime - Variable in class loci.formats.in.SDTInfo
Correlation time [ms].
COUNT - Static variable in class loci.poi.hssf.record.FnGroupCountRecord
suggested default (14 dec)
Count - Class in mdbtools.dbengine.functions
 
Count() - Constructor for class mdbtools.dbengine.functions.Count
 
countBlocks() - Method in interface loci.poi.poifs.filesystem.BATManaged
Return the number of BigBlock's this instance uses
countBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument
Return the number of BigBlock's this instance uses
countBlocks() - Method in class loci.poi.poifs.property.PropertyTable
Return the number of BigBlock's this instance uses
countBlocks() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter
Return the number of BigBlock's this instance uses
countBlocks() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter
Return the number of BigBlock's this instance uses
countImages() - Method in class loci.formats.in.BaseZeissReader
 
countImages() - Method in class loci.formats.in.ZeissTIFFReader
 
countImages() - Method in class loci.formats.in.ZeissZVIReader
 
countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
Total count of all children and their children's children.
countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShape
Count of all children and their childrens children.
countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
Count of all children and their childrens children.
CountryRecord - Class in loci.poi.hssf.record
Title: Country Record (aka WIN.INI country)
CountryRecord() - Constructor for class loci.poi.hssf.record.CountryRecord
 
CountryRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CountryRecord
Constructs a CountryRecord and sets its fields appropriately
CP_037 - Static variable in class loci.poi.hpsf.Constants
Codepage 037, a special case
CP_EUC_JP - Static variable in class loci.poi.hpsf.Constants
Codepage for EUC-JP
CP_EUC_KR - Static variable in class loci.poi.hpsf.Constants
Codepage for EUC-KR
CP_GB18030 - Static variable in class loci.poi.hpsf.Constants
Codepage for GB18030
CP_GB2312 - Static variable in class loci.poi.hpsf.Constants
Codepage for GB2312
CP_GBK - Static variable in class loci.poi.hpsf.Constants
Codepage for GBK, aka MS936
CP_ISO_2022_JP1 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-2022-JP
CP_ISO_2022_JP2 - Static variable in class loci.poi.hpsf.Constants
Another codepage for ISO-2022-JP
CP_ISO_2022_JP3 - Static variable in class loci.poi.hpsf.Constants
Yet another codepage for ISO-2022-JP
CP_ISO_2022_KR - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-2022-KR
CP_ISO_8859_1 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-8859-1
CP_ISO_8859_2 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-8859-2
CP_ISO_8859_3 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-8859-3
CP_ISO_8859_4 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-8859-4
CP_ISO_8859_5 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-8859-5
CP_ISO_8859_6 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-8859-6
CP_ISO_8859_7 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-8859-7
CP_ISO_8859_8 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-8859-8
CP_ISO_8859_9 - Static variable in class loci.poi.hpsf.Constants
Codepage for ISO-8859-9
CP_JOHAB - Static variable in class loci.poi.hpsf.Constants
Codepage for Johab
CP_KOI8_R - Static variable in class loci.poi.hpsf.Constants
Codepage for KOI8-R
CP_MAC_ARABIC - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Arabic (Java: MacArabic)
CP_MAC_CENTRAL_EUROPE - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Central Europe (Latin-2) (Java: MacCentralEurope)
CP_MAC_CHINESE_SIMPLE - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Chinese Simplified (Java: unknown - use EUC_CN, ISO2022_CN_GB, MS936 or cp935)
CP_MAC_CHINESE_TRADITIONAL - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Chinese Traditional (Java: unknown - use Big5, MS950, or cp937)
CP_MAC_CROATIAN - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Croatian (Java: MacCroatian)
CP_MAC_CYRILLIC - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Cyrillic (Java: MacCyrillic)
CP_MAC_GREEK - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Greek (Java: MacGreek)
CP_MAC_HEBREW - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Hebrew (Java: MacHebrew)
CP_MAC_ICELAND - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Iceland (Java: MacIceland)
CP_MAC_JAPAN - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Japan (Java: unknown - use SJIS, cp942 or cp943)
CP_MAC_KOREAN - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Korean (Java: unknown - use EUC_KR or cp949)
CP_MAC_ROMAN - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Roman (Java: MacRoman)
CP_MAC_ROMANIA - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Romanian (Java: MacRomania)
CP_MAC_THAI - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Thai (Java: MacThai)
CP_MAC_TURKISH - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Turkish (Java: MacTurkish)
CP_MAC_UKRAINE - Static variable in class loci.poi.hpsf.Constants
Codepage for Macintosh Ukrainian (Java: MacUkraine)
CP_MS949 - Static variable in class loci.poi.hpsf.Constants
Codepage for MS949
CP_SJIS - Static variable in class loci.poi.hpsf.Constants
Codepage for SJIS
CP_UNICODE - Static variable in class loci.poi.hpsf.Constants
Codepage for Unicode
CP_US_ACSII - Static variable in class loci.poi.hpsf.Constants
Codepage for US-ASCII
CP_US_ASCII2 - Static variable in class loci.poi.hpsf.Constants
Another codepage for US-ASCII
CP_UTF16 - Static variable in class loci.poi.hpsf.Constants
Codepage for UTF-16
CP_UTF16_BE - Static variable in class loci.poi.hpsf.Constants
Codepage for UTF-16 big-endian
CP_UTF8 - Static variable in class loci.poi.hpsf.Constants
Codepage for UTF-8
CP_WINDOWS_1250 - Static variable in class loci.poi.hpsf.Constants
Codepage for Windows 1250
CP_WINDOWS_1251 - Static variable in class loci.poi.hpsf.Constants
Codepage for Windows 1251
CP_WINDOWS_1252 - Static variable in class loci.poi.hpsf.Constants
Codepage for Windows 1252
CP_WINDOWS_1253 - Static variable in class loci.poi.hpsf.Constants
Codepage for Windows 1253
CP_WINDOWS_1254 - Static variable in class loci.poi.hpsf.Constants
Codepage for Windows 1254
CP_WINDOWS_1255 - Static variable in class loci.poi.hpsf.Constants
Codepage for Windows 1255
CP_WINDOWS_1256 - Static variable in class loci.poi.hpsf.Constants
Codepage for Windows 1256
CP_WINDOWS_1257 - Static variable in class loci.poi.hpsf.Constants
Codepage for Windows 1257
CP_WINDOWS_1258 - Static variable in class loci.poi.hpsf.Constants
Codepage for Windows 1258
cqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC
 
CRC - Class in loci.common
Legacy delegator class for ome.scifio.common.CRC.
CRC() - Constructor for class loci.common.CRC
 
CRC - Class in ome.scifio.common
A simple class the hold and calculate the CRC for sanity checking of the data.
CRC() - Constructor for class ome.scifio.common.CRC
 
CRC_32_TABLE - Static variable in class loci.common.CRC
 
CRC_32_TABLE - Static variable in class ome.scifio.common.CRC
 
create(InputStream) - Static method in class loci.poi.hpsf.PropertySetFactory
Creates the most specific PropertySet from an InputStream.
create() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
create(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
create() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
create() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
create(String, Properties) - Static method in class loci.poi.hssf.usermodel.FontDetails
Create an instance of FontDetails by loading them from the provided property object.
createAggregate(List, int, DrawingManager2) - Static method in class loci.poi.hssf.record.EscherAggregate
Collapses the drawing records into an aggregate.
createAnchor(HSSFAnchor) - Method in class loci.poi.hssf.model.AbstractShape
Creates an escher anchor record from a HSSFAnchor.
createAnchor(HSSFAnchor) - Static method in class loci.poi.hssf.model.ConvertAnchor
 
createArrayForType(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
Creates an array appropriate for the indicated data type.
createBackup() - Method in class loci.poi.hssf.model.Workbook
creates the Backup record with backup set to 0.
createBATBlocks(int[], int) - Static method in class loci.poi.poifs.storage.BATBlock
Create an array of BATBlocks from an array of int block allocation table entries
createBlank(int, short) - Method in class loci.poi.hssf.model.Sheet
create a BLANK record (does not add it to the records contained in this sheet)
createBlocks(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter
Create the BATBlocks we need
createBOF() - Method in class loci.poi.hssf.model.Sheet
creates the BOF record
createBOF() - Method in class loci.poi.hssf.model.Workbook
creates the BOF record
createBookBool() - Method in class loci.poi.hssf.model.Workbook
creates the BookBool record with saveLinkValues set to 0.
createBoundSheet(int) - Method in class loci.poi.hssf.model.Workbook
create a "bound sheet" or "bundlesheet" (depending who you ask) record Always sets the sheet's bof to 0.
createBox(int, Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Creates a Box object with the provided type based on the provided Node object based on reflection.
createBuilder() - Static method in class ome.scifio.xml.XMLTools
Creates a new DocumentBuilder via DocumentBuilderFactory or logs and throws a RuntimeException.
createBuiltInName(byte, int) - Method in class loci.poi.hssf.model.Workbook
Generates a NameRecord to represent a built-in region
createCalcCount() - Method in class loci.poi.hssf.model.Sheet
creates the CalcCount record and sets it to 0x64 (default number of iterations)
createCalcMode() - Method in class loci.poi.hssf.model.Sheet
creates the CalcMode record and sets it to 1 (automatic formula caculation)
createCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow
Use this to create new cells within the row and return it.
createCell(short, int) - Method in class loci.poi.hssf.usermodel.HSSFRow
Use this to create new cells within the row and return it.
createCellFromRecord(CellValueRecordInterface) - Method in class loci.poi.hssf.usermodel.HSSFRow
create a high level HSSFCell object from an existing low level record.
createCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
create a new Cell style and add it to the workbook's style table
createCellXF() - Method in class loci.poi.hssf.model.Workbook
creates a new Cell-type Extneded Format Record and adds it to the end of ExtendedFormatRecords collection
createCodepage() - Method in class loci.poi.hssf.model.Workbook
creates the Codepage record containing the constant stored in CODEPAGE
createColInfo() - Method in class loci.poi.hssf.model.Sheet
creates the ColumnInfo Record and sets it to a default column/width
createColInfo() - Static method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
creates the ColumnInfo Record and sets it to a default column/width
createColorModel(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Creates a ColorModel that may be used with the specified SampleModel.
createColorModel(ColorSpace, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
createComment(HSSFAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
Constructs a cell comment.
createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.Index16ColorModel
 
createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.SignedColorModel
 
createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel
 
createCountry() - Method in class loci.poi.hssf.model.Workbook
Creates the Country record with the default country set to 1 and current country set to 7 in case of russian locale ("ru_RU") and 1 otherwise
created - Variable in class loci.formats.out.QTWriter
Time the file was created.
createData() - Method in class loci.tests.IOTester
 
createDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Returns the instance of HSSFDataFormat for this workbook.
createDateWindow1904() - Method in class loci.poi.hssf.model.Workbook
creates the DateWindow1904 record with windowing set to 0.
createDefaultColWidth() - Method in class loci.poi.hssf.model.Sheet
creates the DefaultColWidth Record and sets it to 8
createDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet
creates the DefaultRowHeight Record and sets its options to 0 and rowheight to 0xff
createDelta() - Method in class loci.poi.hssf.model.Sheet
creates the Delta record and sets it to 0.0010 (default accuracy)
createDequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the dequantizer parameters.
createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager
 
createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager2
 
createDimensions() - Method in class loci.poi.hssf.model.Sheet
creates the Dimensions Record and sets it to bogus values (you should set this yourself or let the high level API do it for you)
createDirectory(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
create a new DirectoryEntry
createDirectory(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode
create a new DirectoryEntry
createDirectory(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
create a new DirectoryEntry in the root directory
createDocument(String, RandomAccessInputStream) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
create a new DocumentEntry
createDocument(String, int, POIFSWriterListener) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
create a new DocumentEntry; the data will be provided later
createDocument(String, RandomAccessInputStream) - Method in class loci.poi.poifs.filesystem.DirectoryNode
create a new DocumentEntry
createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.DirectoryNode
create a new DocumentEntry; the data will be provided later
createDocument(RandomAccessInputStream, String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
Create a new document to be added to the root directory
createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
create a new DocumentEntry in the root entry; the data will be provided later
createDocument() - Static method in class ome.scifio.xml.XMLTools
createDocumentInputStream(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
open a document in the root entry's list of entries
createDrawingGroup() - Method in class loci.poi.hssf.model.Workbook
Creates a drawing group record.
createDrawingPatriarch() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Creates the toplevel drawing patriarch.
createDSF() - Method in class loci.poi.hssf.model.Workbook
creates the DSF record containing a 0 since HSSF can't even create Dual Stream Files
createEntropyDecoder(CodedCBlkDataSrcDec, J2KImageReadParamJava) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Creates and returns the entropy decoder corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.
createEOF() - Method in class loci.poi.hssf.model.Sheet
creates the EOF record
createEOF() - Method in class loci.poi.hssf.model.Workbook
creates the EOF record
createExtendedFormat(int) - Method in class loci.poi.hssf.model.Workbook
Creates an ExtendedFormatRecord object
createExtendedFormat() - Method in class loci.poi.hssf.model.Workbook
creates an default cell type ExtendedFormatRecord object.
createExtendedSST() - Method in class loci.poi.hssf.model.Workbook
Creates the ExtendedSST record with numstrings per bucket set to 0x8.
createExternSheet() - Method in class loci.poi.hssf.model.Workbook
creates a new extern sheet record
createExtSSTRecord(int) - Method in class loci.poi.hssf.record.SSTRecord
Creates an extended string record based on the current contents of the current SST record.
createFnGroupCount() - Method in class loci.poi.hssf.model.Workbook
creates the FnGroupCount record containing the Magic number constant of 14.
createFont() - Method in class loci.poi.hssf.model.Workbook
creates a Font record with the following magic values:
createFont() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
create a new Font and add it to the workbook's font table
createFooter() - Method in class loci.poi.hssf.model.Sheet
creates the Footer Record and sets it to nothing/0 length
createFormat(int) - Method in class loci.poi.hssf.model.Workbook
Creates a FormatRecord object
createFormat(String) - Method in class loci.poi.hssf.model.Workbook
Creates a FormatRecord, inserts it, and returns the index code.
createFormula(int, short, String) - Method in class loci.poi.hssf.model.Sheet
Attempts to parse the formula into PTGs and create a formula record DOES NOT WORK YET
createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.model.Sheet
Creates a split (freezepane).
createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Creates a split (freezepane).
createFreezePane(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Creates a split (freezepane).
createFromMetadata(IIOMetadata) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Creates a TIFFDirectory instance from the contents of an image metadata object.
createFromMetadataNode(TIFFTagSet, Node) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
Creates a TIFFField from a TIFF native image metadata node.
createGridset() - Method in class loci.poi.hssf.model.Sheet
creates the Gridset record and sets it to true (user has mucked with the gridlines)
createGroup(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
Creates a new group record stored under this patriarch.
createGroup(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
Create another group under this group.
createGuts() - Method in class loci.poi.hssf.model.Sheet
creates the Guts record and sets leftrow/topcol guttter and rowlevelmax/collevelmax to 0
createHCenter() - Method in class loci.poi.hssf.model.Sheet
creates the HCenter Record and sets it to false (don't horizontally center)
createHeader() - Method in class loci.poi.hssf.model.Sheet
creates the Header Record and sets it to nothing/0 length
createHideObj() - Method in class loci.poi.hssf.model.Workbook
creates the HideObj record with hide object set to 0.
createImage(String, List<ImageProcessor>) - Static method in class loci.plugins.in.ImagePlusReader
Creates an ImagePlus from the given image processors.
createImage(String, ImageStack, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader
Creates an ImagePlus from the given image stack.
createImage() - Method in class loci.plugins.util.RecordedImageProcessor
 
createIndex() - Method in class loci.poi.hssf.model.Sheet
creates the Index record - not currently used
createIndexColorModel(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
Creates an palette representing colors from given image img.
createIndexedImage(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
Creates an image representing given image src using IndexColorModel.
createInputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
 
createInstance(RandomAccessIO, HeaderDecoder, J2KImageReadParamJava, DecoderSpecs, boolean, HeaderInfo) - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Creates a bit stream reader of the correct type that works on the provided RandomAccessIO, with the special parameters from the parameter list.
createInstance(CBlkQuantDataSrcEnc, J2KImageWriteParamJava, CBlkSizeSpec, PrecinctSizeSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec) - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder
Creates a EntropyCoder object for the appropriate entropy coding parameters in the parameter list 'pl', and having 'src' as the source of quantized data.
createInstance(CodedCBlkDataSrcEnc, float, CodestreamWriter, J2KImageWriteParamJava) - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
Creates a PostCompRateAllocator object for the appropriate rate allocation parameters in the parameter list 'pl', having 'src' as the source of entropy coded data, 'rate' as the target bitrate and 'bw' as the bit stream writer object.
createInstance(CBlkWTDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.quantization.quantizer.Quantizer
Creates a Quantizer object for the appropriate type of quantization specified in the options in the parameter list 'pl', and having 'src' as the source of data to be quantized.
createInstance(Quantizer, J2KImageWriteParamJava) - Static method in class jj2000.j2k.roi.encoder.ROIScaler
Creates a ROIScaler object.
createInstance(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Static method in class jj2000.j2k.roi.ROIDeScaler
Creates a ROIDeScaler object.
createInstance(BlkImgDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT
Creates a ForwardWT object with the specified filters, and with other options specified in the parameter list 'pl'.
createInstance(CBlkWTDataSrcDec, DecoderSpecs) - Static method in class jj2000.j2k.wavelet.synthesis.InverseWT
Creates an InverseWT object that works on the data type of the source, with the special additional parameters from the parameter list.
createInstances() - Method in class loci.tests.testng.FormatReaderTestFactory
 
createInstances() - Method in class loci.tests.testng.FormatWriterTestFactory
 
createInterfaceEnd() - Method in class loci.poi.hssf.model.Workbook
creates the InterfaceEnd record
createInterfaceHdr() - Method in class loci.poi.hssf.model.Workbook
creates the InterfaceHdr record
createIteration() - Method in class loci.poi.hssf.model.Sheet
creates the Iteration record and sets it to false (don't iteratively calculate formulas)
createLabelSST(int, short, int) - Method in class loci.poi.hssf.model.Sheet
Create a LABELSST Record (does not add it to the records contained in this sheet)
createLogFile() - Static method in class loci.tests.testng.TestTools
Creates a new log file.
createLSID(String, int...) - Static method in class loci.formats.MetadataTools
Constructs an LSID, given the object type and indices.
createMergedCells() - Method in class loci.poi.hssf.model.Sheet
 
createMMS() - Method in class loci.poi.hssf.model.Workbook
creates an MMS record
createName() - Method in class loci.poi.hssf.model.Workbook
creates new name
createName() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
creates a new named range and add it to the model
createNewDocument() - Method in class loci.formats.ome.AbstractOMEXMLMetadata
 
createNewFile() - Method in class loci.common.Location
Creates a new empty file named by this Location's path name iff a file with this name does not already exist.
createNewFile() - Method in class ome.scifio.io.Location
Creates a new empty file named by this Location's path name iff a file with this name does not already exist.
createNewFont() - Method in class loci.poi.hssf.model.Workbook
creates a new font record and adds it to the "font table".
createNumber(int, short, double) - Method in class loci.poi.hssf.model.Sheet
Create a NUMBER Record (does not add it to the records contained in this sheet)
createObjectProtect() - Method in class loci.poi.hssf.model.Sheet
creates an ObjectProtect record with protect set to false.
createOMEXMLMetadata() - Static method in class loci.formats.MetadataTools
Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.
createOMEXMLMetadata(String) - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.createOMEXMLMetadata(String) instead.
createOMEXMLMetadata(String, String) - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.createOMEXMLMetadata(String, String) instead.
createOMEXMLMetadata() - Method in interface loci.formats.services.OMEXMLService
Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.
createOMEXMLMetadata(String) - Method in interface loci.formats.services.OMEXMLService
Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.
createOMEXMLMetadata(String, String) - Method in interface loci.formats.services.OMEXMLService
Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.
createOMEXMLMetadata() - Method in class loci.formats.services.OMEXMLServiceImpl
 
createOMEXMLMetadata(String) - Method in class loci.formats.services.OMEXMLServiceImpl
 
createOMEXMLMetadata(String, String) - Method in class loci.formats.services.OMEXMLServiceImpl
 
createOMEXMLRoot(String) - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.createOMEXMLRoot(String) instead.
createOMEXMLRoot(String) - Method in interface loci.formats.services.OMEXMLService
Constructs an OME root node.
createOMEXMLRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl
 
createOutputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
 
createPalette() - Method in class loci.poi.hssf.model.Workbook
Creates a palette record initialized to the default palette
createParsedExpressionTokens(short, RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg
 
createPassword() - Method in class loci.poi.hssf.model.Sheet
creates a Password record with password set to 00.
createPassword() - Method in class loci.poi.hssf.model.Workbook
creates the Password record with password set to 0.
createPasswordRev4() - Method in class loci.poi.hssf.model.Workbook
creates the PasswordRev4 record with password set to 0.
createPicture(HSSFClientAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
Creates a picture.
createPicture(HSSFChildAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
Creates a picture.
createPolygon(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
Creates a polygon
createPolygon(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
Creates a polygon
createPrecision() - Method in class loci.poi.hssf.model.Workbook
creates the Precision record with precision set to true.
createPrintGridlines() - Method in class loci.poi.hssf.model.Sheet
creates the PrintGridlines record and sets it to false (that makes for ugly sheets).
createPrintHeaders() - Method in class loci.poi.hssf.model.Sheet
creates the PrintHeaders record and sets it to false (we don't create headers yet so why print them)
createPrintSetup() - Method in class loci.poi.hssf.model.Sheet
creates the PrintSetup Record and sets it to defaults and marks it invalid
createProcessor(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
createProperties(byte[], int, short) - Method in class loci.poi.ddf.EscherPropertyFactory
Create new properties from a byte array.
createPropertyBlockArray(List, int) - Static method in class loci.poi.poifs.storage.PropertyBlock
Create an array of PropertyBlocks from an array of Property instances, creating empty Property instances to make up any shortfall
createProtect() - Method in class loci.poi.hssf.model.Sheet
creates a Protect record with protect set to false.
createProtect() - Method in class loci.poi.hssf.model.Workbook
creates the Protect record with protect set to false.
createProtectionRev4() - Method in class loci.poi.hssf.model.Workbook
creates the ProtectionRev4 record with protect set to false.
createPtg(RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg
 
createRawImage() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
Creates a BufferedImage whose underlying data array will be suitable for holding the raw decoded output of the decodeRaw method.
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
 
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
 
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
 
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
 
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
 
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
 
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
 
createRecord(byte[], int) - Method in class loci.poi.ddf.DefaultEscherRecordFactory
Generates an escher record including the any children contained under that record.
createRecord(byte[], int) - Method in interface loci.poi.ddf.EscherRecordFactory
Create a new escher record from the data provided.
createRecord(RecordInputStream) - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory
create a record, if there are MUL records than multiple records are returned digested into the non-mul form.
createRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.RecordFactory
Deprecated.
 
createRecords(InputStream, boolean) - Static method in class loci.poi.hssf.dev.BiffViewer
Create an array of records from an input stream
createRecords(InputStream) - Static method in class loci.poi.hssf.record.RecordFactory
Deprecated.
Create an array of records from an input stream
createRefMode() - Method in class loci.poi.hssf.model.Sheet
creates the RefMode record and sets it to A1 Mode (default reference mode)
createRefreshAll() - Method in class loci.poi.hssf.model.Workbook
creates the RefreshAll record with refreshAll set to true.
createROIDeScaler(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Creates and returns the ROIDeScaler corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.
createRoot() - Method in class loci.formats.meta.AggregateMetadata
 
createRoot() - Method in class loci.formats.meta.DummyMetadata
 
createRoot() - Method in class loci.formats.meta.FilterMetadata
 
createRoot() - Method in interface loci.formats.meta.MetadataStore
 
createRoot() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
createRow(int) - Method in class loci.poi.hssf.model.Sheet
Create a row record.
createRow(int) - Static method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
Create a row record.
createRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Create a new row within the sheet and return the high level representation
createSaveRecalc() - Method in class loci.poi.hssf.model.Sheet
creates the SaveRecalc record and sets it to true (recalculate before saving)
createScenarioProtect() - Method in class loci.poi.hssf.model.Sheet
creates a ScenarioProtect record with protect set to false.
createSelection() - Method in class loci.poi.hssf.model.Sheet
Creates the Selection record and sets it to nothing selected
createShape(HSSFShape, int) - Static method in class loci.poi.hssf.model.AbstractShape
Create a new shape object used to create the escher records.
createShape(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
Create a new simple shape under this group.
createSheet(List, int, int) - Static method in class loci.poi.hssf.model.Sheet
read support (offset used as starting point for search) for low level API.
createSheet(List, int) - Static method in class loci.poi.hssf.model.Sheet
read support (offset = 0) Same as createSheet(Record[] recs, int, int) only the record offset is assumed to be 0.
createSheet() - Static method in class loci.poi.hssf.model.Sheet
Creates a sheet with all the usual records minus values and the "index" record (not required).
createSheet() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.
createSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.
createSimpleShape(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
Creates a simple shape.
createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.model.Sheet
Creates a split pane.
createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Creates a split pane.
createSST() - Method in class loci.poi.hssf.model.Workbook
Creates the SST record with no strings and the unique/num string set to 0
createStack(List<ImageProcessor>, List<String>, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader
Creates an image stack from the given image processors.
createStyle(int) - Method in class loci.poi.hssf.model.Workbook
Creates a StyleRecord object
createSubRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.SubRecord
 
createTabId() - Method in class loci.poi.hssf.model.Workbook
creates the TabId record containing an array of 0,1,2.
createTempFile(String, String) - Static method in class loci.poi.util.TempFile
Creates a temporary file.
createTextbox(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
Constructs a textbox under the patriarch.
createTextbox(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
Create a new textbox under this group.
createUseSelFS() - Method in class loci.poi.hssf.model.Workbook
Creates the UseSelFS object with the use natural language flag set to 0 (false)
createVCenter() - Method in class loci.poi.hssf.model.Sheet
creates the VCenter Record and sets it to false (don't horizontally center)
createWindowOne() - Method in class loci.poi.hssf.model.Workbook
creates the WindowOne record with the following magic values:
createWindowProtect() - Method in class loci.poi.hssf.model.Workbook
creates the WindowProtect record with protect set to false.
createWindowTwo() - Method in class loci.poi.hssf.model.Sheet
creates the WindowTwo Record and sets it to:
createWorkbook(List) - Static method in class loci.poi.hssf.model.Workbook
read support for low level API.
createWorkbook() - Static method in class loci.poi.hssf.model.Workbook
Creates an empty workbook object with three blank sheets and all the empty fields.
createWriteAccess() - Method in class loci.poi.hssf.model.Workbook
creates the WriteAccess record containing the logged in user's name
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
 
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
 
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
 
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
 
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
 
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
 
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
 
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
 
createWSBool() - Method in class loci.poi.hssf.model.Sheet
creates the WSBoolRecord and sets its values to defaults
createXBATBlocks(int[], int, int) - Static method in class loci.poi.poifs.storage.BATBlock
Create an array of XBATBlocks from an array of int block allocation table entries
crg - Variable in class jj2000.j2k.codestream.HeaderInfo
Reference to the CRG marker segment found in main header
CRG - Static variable in interface jj2000.j2k.codestream.Markers
Component registration (CRG): 0xFF63
CRG_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
Flag bit for CRG marker segment found
crgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN
 
crop() - Method in class loci.plugins.util.RecordedImageProcessor
 
cropBox - Variable in class loci.plugins.in.MainDialog
 
CropDialog - Class in loci.plugins.in
Bio-Formats Importer crop options dialog box.
CropDialog(ImportProcess) - Constructor for class loci.plugins.in.CropDialog
Creates a crop options dialog for the Bio-Formats Importer.
crossChan - Variable in class loci.formats.in.SDTInfo
Cross FCS routing channel number when chan = crossChan and mod == crossMod - Auto FCS otherwise - Cross FCS.
CrosshairStrategy - Class in loci.formats.cache
A crosshair strategy caches planes extending from the the current dimensional position along each individual axis, but not combinations of axes.
CrosshairStrategy(int[]) - Constructor for class loci.formats.cache.CrosshairStrategy
Constructs a crosshair strategy.
crossMod - Variable in class loci.formats.in.SDTInfo
Cross FCS module number.
crossMtResol - Variable in class loci.formats.in.SDTInfo
Macro time clock of cross FCS module in 0.1 ns units.
cs - Variable in class jj2000.j2k.entropy.Progression
Component index for the start of a progression
CS_2C - Static variable in class loci.formats.gui.TwoChannelColorSpace
 
CSB_APPROX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
CSB_ENUM_GREY - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
CSB_ENUM_SRGB - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
CSB_ENUM_YCC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
CSB_METH - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
Colour Specification Box Fields
CSB_PREC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
cScroll - Variable in class loci.plugins.util.DataBrowser
 
csiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
cSlider - Variable in class loci.formats.gui.ImageViewer
 
cSliders - Variable in class loci.plugins.util.DataBrowser
 
cspoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
 
css - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
Causal stripes specifications
CSV_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
 
ctp - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
The cumulative number of truncation points
cts - Variable in class jj2000.j2k.decoder.DecoderSpecs
The component transformation specifications
ctX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The current tile horizontal index
ctY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The current tile vertical index
cTypes - Variable in class loci.formats.CoreMetadata
Deprecated.
culx - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The horizontal coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.
culy - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The vertical coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.
cur_pg - Variable in class mdbtools.libmdb.MdbHandle
 
cur_pg_num - Variable in class mdbtools.libmdb.MdbTableDef
 
cur_phys_pg - Variable in class mdbtools.libmdb.MdbTableDef
 
cur_pos - Variable in class mdbtools.libmdb.MdbHandle
 
cur_row - Variable in class mdbtools.libmdb.MdbTableDef
 
cur_value_len - Variable in class mdbtools.libmdb.MdbColumn
 
cur_value_start - Variable in class mdbtools.libmdb.MdbColumn
 
curCycle - Variable in class loci.formats.in.SDTInfo
Current cycle (accumulation cycle in FLOW mode) - (if multi-cycle measurement).
curPage - Variable in class loci.formats.in.SDTInfo
Current measured page.
current - Variable in class loci.formats.ImageWriter
Current form index.
currentId - Variable in class loci.formats.FormatHandler
Name of current file.
currentId - Variable in class loci.formats.ImageWriter
Name of current file.
currentLength - Variable in class loci.poi.hssf.record.RecordInputStream
 
currentPos - Variable in class loci.formats.cache.Cache
Current dimensional position.
currentRow - Variable in class mdbtools.dbengine.MemoryData
 
currentSid - Variable in class loci.poi.hssf.record.RecordInputStream
 
currLevel - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
 
currSize - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
 
curStep - Variable in class loci.formats.in.SDTInfo
Current step (if multi-step measurement).
curve - Variable in class loci.formats.codec.NikonCodecOptions
 
CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty
 
CUSTOM - Static variable in interface jj2000.j2k.wavelet.FilterTypes
User-defined filter: -1
CUSTOM_RENDERED - Static variable in class loci.formats.tiff.IFD
 
CUSTOM_RENDERED_CUSTOM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "CustomRendered" tag.
CUSTOM_RENDERED_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "CustomRendered" tag.
CustomField - Interface in loci.poi.hssf.record
 
CustomProperties - Class in loci.poi.hpsf
Maintains the instances of CustomProperty that belong to a DocumentSummaryInformation.
CustomProperties() - Constructor for class loci.poi.hpsf.CustomProperties
 
CustomProperty - Class in loci.poi.hpsf
This class represents custum properties in the document summary information stream.
CustomProperty() - Constructor for class loci.poi.hpsf.CustomProperty
Creates an empty CustomProperty.
CustomProperty(Property) - Constructor for class loci.poi.hpsf.CustomProperty
Creates a CustomProperty without a name by copying the underlying Property' attributes.
CustomProperty(Property, String) - Constructor for class loci.poi.hpsf.CustomProperty
Creates a CustomProperty with a name.
cycles - Variable in class loci.formats.in.SDTInfo
Cycles (accumulation cycles in FLOW mode).

D

DAILY_BUILD - Static variable in class loci.formats.UpgradeChecker
Location of the JAR artifacts for Bio-Formats' daily build.
DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
data - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
 
data - Variable in class jj2000.j2k.entropy.CodedCBlk
The compressed data
data - Variable in class jj2000.j2k.image.DataBlkFloat
The array where the data is stored
data - Variable in class jj2000.j2k.image.DataBlkInt
The array where the data is stored
data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
The array where the data is stored
data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
The array where the data is stored
data - Variable in class loci.poi.hssf.record.RecordInputStream
 
Data - Interface in mdbtools.dbengine
Data represents a set of rows containing data
Data - Class in mdbtools.libmdb
 
Data() - Constructor for class mdbtools.libmdb.Data
 
DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo
For normal .sdt files (setup + data).
DATA_LABEL_PLACEMENT_ABOVE - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_AUTO - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_AXIS - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_BELOW - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_CHART_DEPENDENT - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_INSIDE - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_OUTSIDE - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_RIGHT - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_USER_MOVED - Static variable in class loci.poi.hssf.record.TextRecord
 
DataBlk - Class in jj2000.j2k.image
This is a generic abstract class to store data from a block of an image.
DataBlk() - Constructor for class jj2000.j2k.image.DataBlk
 
DataBlkFloat - Class in jj2000.j2k.image
This is an implementation of the DataBlk interface for 32 bit floating point data (float).
DataBlkFloat() - Constructor for class jj2000.j2k.image.DataBlkFloat
Creates a DataBlkFloat with 0 dimensions and no data array (i.e.
DataBlkFloat(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkFloat
Creates a DataBlkFloat with the specified dimensions and position.
DataBlkFloat(DataBlkFloat) - Constructor for class jj2000.j2k.image.DataBlkFloat
Copy constructor.
DataBlkInt - Class in jj2000.j2k.image
This is an implementation of the DataBlk interface for signed 32 bit integral data.
DataBlkInt() - Constructor for class jj2000.j2k.image.DataBlkInt
Creates a DataBlkInt with 0 dimensions and no data array (i.e.
DataBlkInt(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkInt
Creates a DataBlkInt with the specified dimensions and position.
DataBlkInt(DataBlkInt) - Constructor for class jj2000.j2k.image.DataBlkInt
Copy constructor.
dataBlockLength - Variable in class loci.formats.in.SDTInfo
 
dataBlockOffs - Variable in class loci.formats.in.SDTInfo
Offset of the first data block.
DataBrowser - Class in loci.plugins.util
Extension of StackWindow with additional UI trimmings for animation, virtual stack caching options, metadata, and general beautification.
DataBrowser(ImagePlus) - Constructor for class loci.plugins.util.DataBrowser
 
DataBrowser(ImagePlus, ImageCanvas, String[], int[]) - Constructor for class loci.plugins.util.DataBrowser
 
DataBrowser(ImagePlus, ImageCanvas, String[], int[], XMLWindow) - Constructor for class loci.plugins.util.DataBrowser
 
DataConverter - Class in loci.formats.gui
A utility for reorganizing and converting QuickTime movies, TIFF series and other 4D datasets.
DataConverter() - Constructor for class loci.formats.gui.DataConverter
 
DataEntryURLBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is defined to represent a Data Entry URL Box of JPEG JP2 file format.
DataEntryURLBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
Constructs a DataEntryURLBox from its content data.
DataEntryURLBox(byte, byte[], String) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
Constructs a DataEntryURLBox from its data elements.
DataEntryURLBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
Constructs a DataEntryURLBox from a Node.
DataFormatRecord - Class in loci.poi.hssf.record
The data format record is used to index into a series.
DataFormatRecord() - Constructor for class loci.poi.hssf.record.DataFormatRecord
 
DataFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DataFormatRecord
Constructs a DataFormat record and sets its fields appropriately.
dataOffs - Variable in class loci.formats.in.SDTInfo
Offset of the data block from the beginning of the file.
Dataset - Class in ome.xml.model
 
Dataset() - Constructor for class ome.xml.model.Dataset
Default constructor.
Dataset(Element, OMEModel) - Constructor for class ome.xml.model.Dataset
Constructs Dataset recursively from an XML DOM tree.
Dataset(Dataset) - Constructor for class ome.xml.model.Dataset
Copy constructor.
datasetDescription - Variable in class loci.formats.FormatReader
Short description of the structure of the dataset.
DatasetRef - Class in ome.xml.model
 
DatasetRef() - Constructor for class ome.xml.model.DatasetRef
Default constructor.
DatasetRef(Element, OMEModel) - Constructor for class ome.xml.model.DatasetRef
Constructs DatasetRef recursively from an XML DOM tree.
DatasetRef(DatasetRef) - Constructor for class ome.xml.model.DatasetRef
Copy constructor.
DataSource - Interface in mdbtools.dbengine
DataSource represents the data store.
DataTools - Class in loci.common
A legacy delegator class for ome.scifio.common.DataTools.
DataTools - Class in ome.scifio.common
A utility class with convenience methods for reading, writing and decoding words.
DATATYPE_INT16 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_INT32 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_INT8 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_KEY - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_REAL32 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_REAL64 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_UINT16 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_UINT32 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_UINT8 - Static variable in class loci.formats.in.LiFlimReader
 
DATE - Static variable in class loci.formats.FormatTools
Date on which this release was built.
date - Variable in class loci.formats.in.SDTInfo
Date of creation.
date() - Static method in class loci.poi.hssf.usermodel.HSSFFooter
Returns the string representing the current date
date() - Static method in class loci.poi.hssf.usermodel.HSSFHeader
Returns the string representing the current date
DATE_FORMAT - Static variable in class loci.formats.in.DeltavisionReader
 
DATE_FORMAT - Static variable in class loci.formats.in.FV1000Reader
 
DATE_FORMAT - Static variable in class loci.formats.in.GelReader
 
DATE_FORMAT - Static variable in class loci.formats.in.IvisionReader
 
DATE_FORMAT - Static variable in class loci.formats.in.L2DReader
 
DATE_FORMAT - Static variable in class loci.formats.in.MicromanagerReader
 
DATE_FORMAT - Static variable in class loci.formats.in.PerkinElmerReader
 
DATE_FORMAT - Static variable in class loci.formats.in.TCSReader
 
DATE_FORMATS - Static variable in class loci.formats.in.BaseTiffReader
 
DATE_FORMATS - Static variable in class loci.formats.in.ICSReader
 
DATE_TIME - Static variable in class loci.formats.tiff.IFD
 
DATE_TIME_DIGITIZED - Static variable in class loci.formats.tiff.IFD
 
DATE_TIME_FORMAT - Static variable in class loci.formats.in.GelReader
 
DATE_TIME_ORIGINAL - Static variable in class loci.formats.tiff.IFD
 
dateToFileTime(Date) - Static method in class loci.poi.hpsf.Util
Converts a Date into a filetime.
DateTools - Class in loci.common
A legacy delegator class for ome.scifio.common.DateTools.
DateTools - Class in ome.scifio.common
A utility class with convenience methods for working with dates.
DateWindow1904Record - Class in loci.poi.hssf.record
Title: Date Window 1904 Flag record
DateWindow1904Record() - Constructor for class loci.poi.hssf.record.DateWindow1904Record
 
DateWindow1904Record(RecordInputStream) - Constructor for class loci.poi.hssf.record.DateWindow1904Record
Constructs a DateWindow1904 record and sets its fields appropriately.
DatRecord - Class in loci.poi.hssf.record
The dat record is used to store options for the chart.
DatRecord() - Constructor for class loci.poi.hssf.record.DatRecord
 
DatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DatRecord
Constructs a Dat record and sets its fields appropriately.
db_passwd - Variable in class mdbtools.libmdb.MdbFile
 
DBCELL_CAPACITY - Static variable in class loci.poi.hssf.record.IndexRecord
 
DBCellRecord - Class in loci.poi.hssf.record
Title: DBCell Record Description: Used by Excel and other MS apps to quickly find rows in the sheets.
DBCellRecord() - Constructor for class loci.poi.hssf.record.DBCellRecord
 
DBCellRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DBCellRecord
Constructs a DBCellRecord and sets its fields appropriately
DC_OFFSET - Static variable in class jj2000.j2k.image.input.ImgReaderPGM
DC offset value used when reading image
deadTimeComp - Variable in class loci.formats.in.SDTInfo
 
debug(String) - Static method in class loci.plugins.BF
 
DEBUG - Static variable in class loci.poi.util.POILogger
 
DebugTools - Class in loci.common
A legacy delegator class for ome.scifio.common.DebugTools.
DebugTools - Class in ome.scifio.common
A utility class with convenience methods for debugging.
DEC_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
The identifier for "component default" specified decomposition
DEC_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
The identifier for "main default" specified decomposition
DEC_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
The identifier for "tile and component specific" specified decomposition
DEC_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
The identifier for "tile specific default" specified decomposition
DecLyrdCBlk - Class in jj2000.j2k.entropy.decoder
This class stores coded (compressed) code-blocks that are organized in layers.
DecLyrdCBlk() - Constructor for class jj2000.j2k.entropy.decoder.DecLyrdCBlk
 
decode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
Decodes the input bit stream (located in the ImageInputStream stream, at offset offset, and continuing for byteCount bytes) into the output BufferedImage image.
decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
 
decode(byte[], int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
 
decode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
 
decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor
 
decode(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil
 
decode() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
Convert raw data to escher records.
decodeDate(int) - Static method in class loci.formats.in.MetamorphReader
Converts a Julian date value into a human-readable string.
decodeNextScanline(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
decodeNumber(int) - Static method in class loci.poi.hssf.util.RKUtil
Do the dirty work of decoding; made a private static method to facilitate testing the algorithm
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
Decodes the source data into the provided byte array b, starting at the offset given by dstOffset.
decodeRaw(short[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
Decodes the source data into the provided short array s, starting at the offset given by dstOffset.
decodeRaw(int[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
Decodes the source data into the provided int array i, starting at the offset given by dstOffset.
decodeRaw(float[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
Decodes the source data into the provided float array f, starting at the offset given by dstOffset.
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
 
decodeRLE() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
DecoderSpecs - Class in jj2000.j2k.decoder
This class holds references to each module specifications used in the decoding chain.
DecoderSpecs(int, int) - Constructor for class jj2000.j2k.decoder.DecoderSpecs
Initialize all members with the given number of tiles and components.
decodeSymbol(int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder
Arithmetically decodes one symbol from the bit stream with the given context and returns its decoded value.
decodeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder
This function performs the arithmetic decoding.
decodeT4() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
decodeT6() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
decodeTime(int) - Static method in class loci.formats.in.MetamorphReader
Converts a time value in milliseconds into a human-readable string.
decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class com.luratech.lwf.lwfDecoder
 
decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in interface loci.formats.services.LuraWaveService
decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl
 
decodeToMemoryGray8(byte[], int, int, int) - Method in class com.luratech.lwf.lwfDecoder
 
decodeToMemoryGray8(byte[], int, int, int) - Method in interface loci.formats.services.LuraWaveService
decodeToMemoryGray8(byte[], int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.Base64Codec
 
decompress(byte[]) - Method in class loci.formats.codec.BaseCodec
 
decompress(byte[][]) - Method in class loci.formats.codec.BaseCodec
 
decompress(byte[], CodecOptions) - Method in class loci.formats.codec.BaseCodec
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.BaseCodec
 
decompress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec
2D data block decoding default implementation.
decompress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec
Decompresses a block of data.
decompress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec
Decompresses a block of data.
decompress(byte[]) - Method in interface loci.formats.codec.Codec
Decompresses a block of data.
decompress(byte[][]) - Method in interface loci.formats.codec.Codec
Decompresses a block of data.
decompress(RandomAccessInputStream, CodecOptions) - Method in interface loci.formats.codec.Codec
Decompresses data from the given RandomAccessInputStream.
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
The CodecOptions parameter must be an instance of HuffmanCodecOptions, and should have the following fields set: table bitsPerSample maxBytes
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec
The CodecOptions parameter should have the following fields set: interleaved littleEndian
decompress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec
The CodecOptions parameter should have the following fields set: interleaved littleEndian
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEGCodec
The CodecOptions parameter should have the following fields set: interleaved littleEndian
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec
The CodecOptions parameter should have the following fields set: interleaved littleEndian
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec
 
decompress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec
The CodecOptions parameter should have the following fields set: maxBytes
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZOCodec
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZWCodec
The CodecOptions parameter should have the following fields set: maxBytes
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MJPBCodec
The CodecOptions parameter must be an instance of MJPBCodecOptions, and should have the following fields set: interlaced width height bitsPerSample littleEndian interleaved
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSRLECodec
The CodecOptions parameter should have the following fields set: width height previousImage
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSVideoCodec
The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.NikonCodec
The CodecOptions parameter must be an instance of NikonCodecOptions, and should have the following fields set: lossy vPredictor curve split bitsPerSample maxBytes width height
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PackbitsCodec
The CodecOptions parameter should have the following fields set: maxBytes
decompress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.QTRLECodec
 
decompress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec
The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.RPZACodec
The CodecOptions parameter should have the following fields set: width height
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.TargaRLECodec
The CodecOptions parameter should have the following fields set: maxBytes CodecOptions.bitsPerSample
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.ZlibCodec
 
decompress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression
Decodes a strip of data.
decompress(byte[], int, int) - Static method in class loci.poi.ddf.EscherBlipWMFRecord
Decompresses a byte array.
decSpec - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The decoder specifications
decSpec - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
The decoder specifications
def - Variable in class jj2000.j2k.ModuleSpec
Default value for each tile-component
DEF_BUF_LEN - Static variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter
The default buffer length, 1024 bytes
DEF_THREADS_NUM - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
The default value for the property in THREADS_PROP_NAME: 0
default_backend - Variable in class mdbtools.libmdb.MdbFile
 
default_backend - Variable in class mdbtools.libmdb.MdbHandle
 
DEFAULT_BLOCK_SIZE - Static variable in class ome.scifio.io.NIOInputStream
Block size to use when searching through the stream.
DEFAULT_BLOCK_SIZE - Static variable in class ome.scifio.io.RandomAccessInputStream
Block size to use when searching through the stream.
DEFAULT_BUCKET_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTRecord
 
DEFAULT_BYTES_PER_STRIP - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
DEFAULT_CALLER - Static variable in class loci.formats.UpgradeChecker
Value of "bioformats.caller" for Bio-Formats utilities.
DEFAULT_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont
Default character set.
DEFAULT_DIMENSION_ORDER - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_DISPLAY_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
DEFAULT_HEADER - Static variable in class ome.scifio.common.IniTable
Default header name when no header is available.
DEFAULT_MINIMUM_ELAPSED - Static variable in class loci.formats.Memoizer
Default value for Memoizer.minimumElapsed if none is provided in the constructor.
DEFAULT_PIXEL_TYPE - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_PORT - Static variable in class loci.ome.io.OmeroReader
 
DEFAULT_RANGE - Static variable in class loci.formats.cache.CacheStrategy
Default cache range.
DEFAULT_RGB_CHANNEL_COUNT - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_C - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_T - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_X - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_Y - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_Z - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.DocumentSummaryInformation
The document name a document summary information stream usually has in a POIFS filesystem.
DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.SummaryInformation
The document name a summary information stream usually has in a POIFS filesystem.
DEFAULT_VALUE - Static variable in class loci.poi.hssf.record.DeltaRecord
 
defaultBufferSize - Static variable in class ome.scifio.io.NIOFileHandle
Default NIO buffer size to facilitate buffered I/O.
defaultcolwidth - Variable in class loci.poi.hssf.model.Sheet
 
DefaultColWidthRecord - Class in loci.poi.hssf.record
Title: Default Column Width Record
DefaultColWidthRecord() - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord
 
DefaultColWidthRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord
Constructs a DefaultColumnWidth record and sets its fields appropriately.
DefaultDataLabelTextPropertiesRecord - Class in loci.poi.hssf.record
The default data label text properties record identifies the text characteristics of the preceeding text record.
DefaultDataLabelTextPropertiesRecord() - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
DefaultDataLabelTextPropertiesRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
Constructs a DefaultDataLabelTextProperties record and sets its fields appropriately.
DefaultEscherRecordFactory - Class in loci.poi.ddf
Generates escher records when provided the byte array containing those records.
DefaultEscherRecordFactory() - Constructor for class loci.poi.ddf.DefaultEscherRecordFactory
Creates an instance of the escher record factory
DefaultMetadataOptions - Class in loci.formats.in
Source code: Trac, Gitweb
DefaultMetadataOptions() - Constructor for class loci.formats.in.DefaultMetadataOptions
 
DefaultMetadataOptions(MetadataLevel) - Constructor for class loci.formats.in.DefaultMetadataOptions
 
defaultMinMax(int) - Static method in class loci.formats.FormatTools
Get the default range for the specified pixel type.
defaultrowheight - Variable in class loci.poi.hssf.model.Sheet
 
DefaultRowHeightRecord - Class in loci.poi.hssf.record
Title: Default Row Height Record Description: Row height for rows with undefined or not explicitly defined heights.
DefaultRowHeightRecord() - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord
 
DefaultRowHeightRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord
Constructs a DefaultRowHeight record and sets its fields appropriately.
defaultRWBufferSize - Static variable in class ome.scifio.io.NIOFileHandle
Default NIO buffer size to facilitate buffered I/O for read/write streams.
defaultValue - Variable in class loci.plugins.prefs.BooleanOption
The option's default value.
defaultValue - Variable in class loci.plugins.prefs.DoubleOption
The option's default value.
defaultValue - Variable in class loci.plugins.prefs.StringOption
The option's default value.
delayTime - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
DelegateReader - Class in loci.formats
DelegateReader is a file format reader that selects which reader to use for a format if there are two readers which handle the same format.
DelegateReader(String, String) - Constructor for class loci.formats.DelegateReader
Constructs a new delegate reader.
DelegateReader(String, String[]) - Constructor for class loci.formats.DelegateReader
Constructs a new delegate reader.
delete() - Method in class loci.common.Location
Deletes this file.
delete() - Method in interface loci.poi.poifs.filesystem.Entry
Delete this Entry.
delete() - Method in class loci.poi.poifs.filesystem.EntryNode
Delete this Entry.
delete() - Method in class ome.scifio.io.Location
Deletes this file.
deleteChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty
Delete a Property
DeletedArea3DPtg - Class in loci.poi.hssf.record.formula
Title: Deleted Area 3D Ptg - 3D referecnce (Sheet + Area)
DeletedArea3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg
Creates new DeletedArea3DPtg
DeletedArea3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg
 
deleteData(String) - Method in class loci.tests.IOTester
 
DeletedRef3DPtg - Class in loci.poi.hssf.record.formula
Title: Deleted Reference 3D Ptg
DeletedRef3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg
Creates new DeletedRef3DPtg
DeletedRef3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg
 
deleteOnExit() - Method in class loci.common.Location
Request that this file be deleted when the JVM terminates.
deleteOnExit() - Method in class ome.scifio.io.Location
Request that this file be deleted when the JVM terminates.
DELTA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
The value of the fourth lifting step coefficient
DELTA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
The value of the fourth lifting step coefficient
DeltaRecord - Class in loci.poi.hssf.record
Title: Delta Record
DeltaRecord() - Constructor for class loci.poi.hssf.record.DeltaRecord
 
DeltaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DeltaRecord
Constructs a Delta record and sets its fields appropriately.
DeltavisionReader - Class in loci.formats.in
DeltavisionReader is the file format reader for Deltavision files.
DeltavisionReader() - Constructor for class loci.formats.in.DeltavisionReader
Constructs a new Deltavision reader.
denom - Variable in class loci.formats.tiff.TiffRational
Components of the rational's fractional representation.
DependencyException - Exception in loci.common.services
Exception thrown when there is an object instantiation error or error processing dependencies.
DependencyException(String) - Constructor for exception loci.common.services.DependencyException
Default constructor.
DependencyException(String, Class<? extends Service>) - Constructor for exception loci.common.services.DependencyException
Default constructor.
DependencyException(String, Class<? extends Service>, Throwable) - Constructor for exception loci.common.services.DependencyException
Default constructor.
DependencyException(Throwable) - Constructor for exception loci.common.services.DependencyException
Default constructor.
depth - Variable in class loci.formats.tools.AmiraParameters
 
Dequantizer - Class in jj2000.j2k.quantization.dequantizer
This is the abstract class from which all dequantizers must inherit.
Dequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Constructor for class jj2000.j2k.quantization.dequantizer.Dequantizer
Initializes the source of compressed data.
DequantizerParams - Class in jj2000.j2k.quantization.dequantizer
This is the generic ineterface for dequantization parameters.
DequantizerParams() - Constructor for class jj2000.j2k.quantization.dequantizer.DequantizerParams
 
derived - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Whether or not the components in the current tile uses a derived quantization step size (only relevant in non reversible quantization mode).
DEST_DISTANCE_REF_KILOMETERS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSDestDistanceRef" tag.
DEST_DISTANCE_REF_KNOTS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSDestDistanceRef" tag.
DEST_DISTANCE_REF_MILES - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSDestDistanceRef" tag.
destinationBands - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The sequence of destination bands to receive the source data.
Detector - Class in ome.xml.model
 
Detector() - Constructor for class ome.xml.model.Detector
Default constructor.
Detector(Element, OMEModel) - Constructor for class ome.xml.model.Detector
Constructs Detector recursively from an XML DOM tree.
Detector(Detector) - Constructor for class ome.xml.model.Detector
Copy constructor.
detectorGain - Variable in class loci.formats.in.BaseZeissReader
 
detectorOffset - Variable in class loci.formats.in.BaseZeissReader
 
DetectorSettings - Class in ome.xml.model
 
DetectorSettings() - Constructor for class ome.xml.model.DetectorSettings
Default constructor.
DetectorSettings(Element, OMEModel) - Constructor for class ome.xml.model.DetectorSettings
Constructs DetectorSettings recursively from an XML DOM tree.
DetectorSettings(DetectorSettings) - Constructor for class ome.xml.model.DetectorSettings
Copy constructor.
DetectorType - Enum in ome.xml.model.enums
 
DetectorTypeEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for DetectorType.
DetectorTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DetectorTypeEnumHandler
 
detType - Variable in class loci.formats.in.SDTInfo
Detector type (SPC-930 in camera mode).
DG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
 
DGG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
 
DIAMONDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DIAMONDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Diamonds
Dichroic - Class in ome.xml.model
 
Dichroic() - Constructor for class ome.xml.model.Dichroic
Default constructor.
Dichroic(Element, OMEModel) - Constructor for class ome.xml.model.Dichroic
Constructs Dichroic recursively from an XML DOM tree.
Dichroic(Dichroic) - Constructor for class ome.xml.model.Dichroic
Copy constructor.
DichroicRef - Class in ome.xml.model
 
DichroicRef() - Constructor for class ome.xml.model.DichroicRef
Default constructor.
DichroicRef(Element, OMEModel) - Constructor for class ome.xml.model.DichroicRef
Constructs DichroicRef recursively from an XML DOM tree.
DichroicRef(DichroicRef) - Constructor for class ome.xml.model.DichroicRef
Copy constructor.
DICOM_MAGIC_STRING - Static variable in class loci.formats.in.DicomReader
 
DicomReader - Class in loci.formats.in
DicomReader is the file format reader for DICOM files.
DicomReader() - Constructor for class loci.formats.in.DicomReader
Constructs a new DICOM reader.
dictionary - Variable in class loci.poi.hpsf.Section
Maps property IDs to section-private PID strings.
difference(byte[], IFD) - Static method in enum loci.formats.tiff.TiffCompression
Performs in-place differencing according to the given predictor value.
DIFFERENTIAL_CORRECTION_APPLIED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSDifferential" tag.
DIFFERENTIAL_CORRECTION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSDifferential" tag.
DIGITAL_ZOOM_RATIO - Static variable in class loci.formats.tiff.IFD
 
dilate() - Method in class loci.plugins.util.RecordedImageProcessor
 
dimensionOrder - Variable in class loci.formats.CoreMetadata
Order in which dimensions are stored.
DimensionOrder - Enum in ome.xml.model.enums
 
DimensionOrderEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for DimensionOrder.
DimensionOrderEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DimensionOrderEnumHandler
 
DimensionsRecord - Class in loci.poi.hssf.record
Title: Dimensions Record
DimensionsRecord() - Constructor for class loci.poi.hssf.record.DimensionsRecord
 
DimensionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DimensionsRecord
Constructs a Dimensions record and sets its fields appropriately.
DimensionSwapper - Class in loci.formats
Handles swapping the dimension order of an image series.
DimensionSwapper() - Constructor for class loci.formats.DimensionSwapper
Constructs a DimensionSwapper around a new image reader.
DimensionSwapper(IFormatReader) - Constructor for class loci.formats.DimensionSwapper
Constructs a DimensionSwapper with the given reader.
dimOrder - Variable in class loci.formats.AxisGuesser
Original ordering of internal dimensional axes.
dims - Variable in class loci.poi.hssf.model.Sheet
 
dimsloc - Variable in class loci.poi.hssf.model.Sheet
 
DIRECTION_REF_MAGNETIC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSTrackRef", "GPSImgDirectionRef", and "GPSDestBearingRef" tags.
DIRECTION_REF_TRUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSTrackRef", "GPSImgDirectionRef", and "GPSDestBearingRef" tags.
DIRECTORY_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants
 
DirectoryEntry - Interface in loci.poi.poifs.filesystem
This interface defines methods specific to Directory objects managed by a Filesystem instance.
DirectoryNode - Class in loci.poi.poifs.filesystem
Simple implementation of DirectoryEntry
DirectoryProperty - Class in loci.poi.poifs.property
Directory property
DirectoryProperty(String) - Constructor for class loci.poi.poifs.property.DirectoryProperty
Default constructor
DirectoryProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DirectoryProperty
reader constructor
DirectoryProperty.PropertyComparator - Class in loci.poi.poifs.property
 
DirectoryProperty.PropertyComparator() - Constructor for class loci.poi.poifs.property.DirectoryProperty.PropertyComparator
 
display(PrintWriter, int) - Method in class loci.poi.ddf.EscherContainerRecord
 
display(PrintWriter, int) - Method in class loci.poi.ddf.EscherRecord
The display methods allows escher variables to print the record names according to their hierarchy.
DISPLAY_MODE_OPAQUE - Static variable in class loci.poi.hssf.record.TextRecord
 
DISPLAY_MODE_TRANSPARENT - Static variable in class loci.poi.hssf.record.TextRecord
 
displayDataBrowser(ImagePlus) - Method in class loci.plugins.in.DisplayHandler
 
displayDialog(GenericDialog) - Method in class loci.plugins.in.IdDialog
Asks user whether Bio-Formats should automatically check for upgrades, and if so, checks for an upgrade and prompts user to install it.
displayDialog(GenericDialog) - Method in class loci.plugins.in.ImporterDialog
Displays the dialog, or grabs values from macro options.
displayDialog(GenericDialog) - Method in class loci.plugins.in.SeriesDialog
 
displayDialog(GenericDialog) - Method in class loci.plugins.in.UpgradeDialog
Asks user whether Bio-Formats should automatically check for upgrades, and if so, checks for an upgrade and prompts user to install it.
DisplayHandler - Class in loci.plugins.in
Logic for displaying images and metadata onscreen using ImageJ.
DisplayHandler(ImportProcess) - Constructor for class loci.plugins.in.DisplayHandler
 
displayImage(ImagePlus) - Method in class loci.plugins.in.DisplayHandler
Displays the given image according to the configured options.
displayImage5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler
 
displayImages(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler
Displays the given images according to the configured options.
displayNormal(ImagePlus) - Method in class loci.plugins.in.DisplayHandler
Displays in a normal ImageJ window.
displayOMEXML() - Method in class loci.plugins.in.DisplayHandler
Displays OME-XML metadata in a tree in its own window.
displayOriginalMetadata() - Method in class loci.plugins.in.DisplayHandler
Displays standard metadata in a table in its own window.
displayROIs(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler
 
displayView5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler
 
disposalMethod - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
dispose() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
dispose() - Method in class loci.formats.gui.CacheComponent
 
dispose() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
distance(int, int) - Method in class loci.formats.cache.CacheStrategy
Computes the distance from the given axis value to the axis center, taking into account the axis ordering scheme.
dither - Variable in class loci.formats.in.SDTInfo
 
DividePtg - Class in loci.poi.hssf.record.formula
This PTG implements the standard binomial divide "/"
DividePtg() - Constructor for class loci.poi.hssf.record.formula.DividePtg
Creates new AddPtg
DividePtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DividePtg
 
DIVIDER - Static variable in class loci.tests.testng.TestTools
 
dl - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk
The coded (compressed) data length.
DLL_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo
For .sdt files created using DLL function SPC_save_data_to_sdtfile (no setup, only data).
dls - Variable in class jj2000.j2k.decoder.DecoderSpecs
Number of decomposition levels specifications
DM3_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader
 
DM4_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader
 
DNGReader - Class in loci.formats.in
DNGReader is the file format reader for Canon DNG (TIFF) files.
DNGReader() - Constructor for class loci.formats.in.DNGReader
Constructs a new DNG reader.
doCodestreamManipulation() - Method in class jj2000.j2k.util.CodestreamManipulator
This method performs the actual manipulation of the codestream which is the reparsing for tile parts and packed packet headers
doCrop() - Method in class loci.plugins.in.ImporterOptions
 
document - Variable in class loci.poi.POITextExtractor
The POIDocument that's open
DOCUMENT_NAME - Static variable in class loci.formats.tiff.IFD
 
DOCUMENT_SUMMARY_INFORMATION_ID - Static variable in class loci.poi.hpsf.wellknown.SectionIDMap
The DocumentSummaryInformation's first and second sections' format ID.
DOCUMENT_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants
 
DocumentBlock - Class in loci.poi.poifs.storage
A block of document data.
DocumentBlock(RawDataBlock, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock
create a document block from a raw data block
DocumentBlock(RandomAccessInputStream, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock
Create a single instance initialized with data.
DocumentDescriptor - Class in loci.poi.poifs.filesystem
Class DocumentDescriptor
DocumentDescriptor(POIFSDocumentPath, String) - Constructor for class loci.poi.poifs.filesystem.DocumentDescriptor
Trivial constructor
DocumentEntry - Interface in loci.poi.poifs.filesystem
This interface defines methods specific to Document objects managed by a Filesystem instance.
DocumentInputStream - Class in loci.poi.poifs.filesystem
This class provides methods to read a DocumentEntry managed by a Filesystem instance.
DocumentInputStream(DocumentEntry, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream
Create an InputStream from the specified DocumentEntry
DocumentInputStream(POIFSDocument, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream
Create an InputStream from the specified Document
DocumentNode - Class in loci.poi.poifs.filesystem
Simple implementation of DocumentEntry
DocumentOutputStream - Class in loci.poi.poifs.filesystem
This class provides a wrapper over an OutputStream so that Document writers can't accidently go over their size limits
DocumentProperty - Class in loci.poi.poifs.property
Trivial extension of Property for POIFSDocuments
DocumentProperty(String, int) - Constructor for class loci.poi.poifs.property.DocumentProperty
Constructor
DocumentProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DocumentProperty
reader constructor
DocumentSummaryInformation - Class in loci.poi.hpsf
Convenience class representing a DocumentSummary Information stream in a Microsoft Office document.
DocumentSummaryInformation(PropertySet) - Constructor for class loci.poi.hpsf.DocumentSummaryInformation
Creates a DocumentSummaryInformation from a given PropertySet.
doesContainsSheetName(String, int) - Method in class loci.poi.hssf.model.Workbook
Determines whether a workbook contains the privided sheet name.
domains - Variable in class loci.formats.FormatReader
List of domains in which this format is used.
doStitchTiles() - Method in class loci.plugins.in.ImporterOptions
 
DOT - Static variable in class loci.formats.ResourceNamer
 
DOT_RANGE - Static variable in class loci.formats.tiff.IFD
 
doTest() - Method in class loci.tests.testng.Configuration
 
DOTTED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DotTestListener - Class in loci.tests.testng
A TestNG listener that displays a "." for each passed test, an "F" for each failure and an "S" for each skip.
DotTestListener() - Constructor for class loci.tests.testng.DotTestListener
 
DOUBLE - Static variable in class loci.formats.FormatTools
Identifies the DOUBLE data type used to store pixel values.
DOUBLE - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DOUBLE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
 
DoubleAnnotation - Class in ome.xml.model
 
DoubleAnnotation() - Constructor for class ome.xml.model.DoubleAnnotation
Default constructor.
DoubleAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.DoubleAnnotation
Constructs DoubleAnnotation recursively from an XML DOM tree.
DoubleAnnotation(DoubleAnnotation) - Constructor for class ome.xml.model.DoubleAnnotation
Copy constructor.
DoubleList - Class in loci.poi.util
A List of double's; as full an implementation of the java.util.List interface as possible, with an eye toward minimal creation of objects the mimicry of List is as follows: if possible, operations designated 'optional' in the List interface are attempted wherever the List interface refers to an Object, substitute double wherever the List interface refers to a Collection or List, substitute DoubleList the mimicry is not perfect, however: operations involving Iterators or ListIterators are not supported remove(Object) becomes removeValue to distinguish it from remove(int index) subList is not supported
DoubleList() - Constructor for class loci.poi.util.DoubleList
create an DoubleList of default size
DoubleList(DoubleList) - Constructor for class loci.poi.util.DoubleList
create a copy of an existing DoubleList
DoubleList(int) - Constructor for class loci.poi.util.DoubleList
create an DoubleList with a predefined initial size
DoubleList2d - Class in loci.poi.util
Provides an interface for interacting with 2d arrays of doubles.
DoubleList2d() - Constructor for class loci.poi.util.DoubleList2d
 
DoubleOption - Class in loci.plugins.prefs
A double option for one of the LOCI plugins.
DoubleOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.DoubleOption
Constructs a double option with the parameters from the given map.
DoubleOption(String, boolean, String, String, double) - Constructor for class loci.plugins.prefs.DoubleOption
Constructs a double option with the given parameters.
doublesToBytes(double[], boolean) - Static method in class loci.common.DataTools
Translates an array of double values into an array of byte values.
doublesToBytes(double[], boolean) - Static method in class ome.scifio.common.DataTools
Translates an array of double values into an array of byte values.
doubleToBytes(double, boolean) - Static method in class loci.common.DataTools
Translates the double value into an array of eight bytes.
doubleToBytes(double, boolean) - Static method in class ome.scifio.common.DataTools
Translates the double value into an array of eight bytes.
doubleValue() - Method in class loci.formats.tiff.TiffRational
Returns the value of the specified number as a double.
doUpgradeCheck() - Method in class loci.plugins.in.ImporterOptions
 
download(URLConnection) - Static method in class loci.plugins.config.InstallWizard
 
download(URLConnection, File) - Static method in class loci.plugins.config.InstallWizard
 
draw(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
draw(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
draw3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawBytes(byte[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawChars(char[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawDot(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawDot2(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
Deprecated. 
drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
DrawingDump - Class in loci.poi.util
Dump out the aggregated escher records
DrawingDump() - Constructor for class loci.poi.util.DrawingDump
 
DrawingGroupRecord - Class in loci.poi.hssf.record
 
DrawingGroupRecord() - Constructor for class loci.poi.hssf.record.DrawingGroupRecord
 
DrawingGroupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingGroupRecord
 
DrawingManager - Class in loci.poi.hssf.model
Provides utilities to manage drawing groups.
DrawingManager(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager
 
DrawingManager2 - Class in loci.poi.hssf.model
Provides utilities to manage drawing groups.
DrawingManager2(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager2
 
DrawingRecord - Class in loci.poi.hssf.record
 
DrawingRecord() - Constructor for class loci.poi.hssf.record.DrawingRecord
 
DrawingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecord
 
DrawingRecordForBiffViewer - Class in loci.poi.hssf.record
This is purely for the biff viewer.
DrawingRecordForBiffViewer() - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer
 
DrawingRecordForBiffViewer(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer
 
DrawingSelectionRecord - Class in loci.poi.hssf.record
 
DrawingSelectionRecord() - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord
 
DrawingSelectionRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord
 
drawLine(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawRect(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawString(String) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawString(String, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
DSFRecord - Class in loci.poi.hssf.record
Title: Double Stream Flag Record
DSFRecord() - Constructor for class loci.poi.hssf.record.DSFRecord
 
DSFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DSFRecord
Constructs a DBCellRecord and sets its fields appropriately.
dsInf - Variable in class loci.poi.POIDocument
Holds further metadata on our document
dstHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The height of the region of the destination image to be written.
dstMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The X coordinate of the upper left pixel to be written in the destination image.
dstMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The Y coordinate of the upper left pixel to be written in the destination image.
dstWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The width of the region of the destination image to be written.
dstXOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The horizontal destination offset used, along with sourceXOffset and subsampleX, to map between horizontal source and destination pixel coordinates.
dstYOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The vertical destination offset used, along with sourceYOffset and subsampleY, to map between horizontal source and destination pixel coordinates.
DummyGraphics2d - Class in loci.poi.hssf.usermodel
 
DummyGraphics2d() - Constructor for class loci.poi.hssf.usermodel.DummyGraphics2d
 
DummyMetadata - Class in loci.formats.meta
A dummy implementation for MetadataStore and MetadataRetrieve that is used when no other metadata implementations are available.
DummyMetadata() - Constructor for class loci.formats.meta.DummyMetadata
 
dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWCompressor
 
dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
 
dump(byte[], int, int, PrintStream) - Method in class loci.poi.ddf.EscherDump
Decodes the escher stream from a byte array and dumps the results to a print stream.
dump(int, byte[], PrintStream) - Method in class loci.poi.ddf.EscherDump
 
dump(byte[], long, OutputStream, int, int) - Static method in class loci.poi.util.HexDump
dump an array of bytes to an OutputStream
dump(byte[], long, OutputStream, int) - Static method in class loci.poi.util.HexDump
dump an array of bytes to an OutputStream
dump(byte[], long, int) - Static method in class loci.poi.util.HexDump
dump an array of bytes to a String
dump(InputStream, PrintStream, int, int) - Static method in class loci.poi.util.HexDump
Dumps bytesToDump bytes to an output stream.
dump() - Method in class mdbtools.dbengine.MemoryData
 
dumpDrawingGroupRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Spits out a list of all the drawing records in the workbook.
dumpDrawingRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Aggregates the drawing records and dumps the escher record hierarchy to the standard output.
dumpOld(long, InputStream, PrintStream) - Method in class loci.poi.ddf.EscherDump
This version of dump is a translation from the open office escher dump routine.
dumpXML() - Method in class loci.formats.ome.AbstractOMEXMLMetadata
Dumps the given OME-XML DOM tree to a string.
dumpXML() - Method in interface loci.formats.ome.OMEXMLMetadata
Dumps the given OME-XML DOM tree to a string.
dumpXML() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
dumpXML(String, Document, Element) - Static method in class ome.scifio.xml.XMLTools
Dumps the given OME-XML DOM tree to a string.
dumpXML(String, Document, Element, boolean) - Static method in class ome.scifio.xml.XMLTools
Dumps the given OME-XML DOM tree to a string.
duplicate(Class<? extends IFormatReader>) - Method in class loci.formats.ReaderWrapper
Performs a deep copy of the reader, including nested wrapped readers.
duplicate(Class<? extends IFormatWriter>) - Method in class loci.formats.WriterWrapper
Performs a deep copy of the writer, including nested wrapped writers.
duplicate() - Method in class loci.plugins.util.RecordedImageProcessor
 
DV_MAGIC_BYTES_1 - Static variable in class loci.formats.in.DeltavisionReader
 
DV_MAGIC_BYTES_2 - Static variable in class loci.formats.in.DeltavisionReader
 
dwt - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
Reference to the DWT module

E

ealDE - Variable in class loci.formats.in.SDTInfo
 
EBCOTRateAllocator - Class in jj2000.j2k.entropy.encoder
This implements the EBCOT post compression rate allocation algorithm.
EBCOTRateAllocator(CodedCBlkDataSrcEnc, LayersInfo, CodestreamWriter, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
Initializes the EBCOT rate allocator of entropy coded data.
ECAT7_MAGIC - Static variable in class loci.formats.in.Ecat7Reader
 
Ecat7Reader - Class in loci.formats.in
Ecat7Reader is the file format reader for ECAT 7 files.
Ecat7Reader() - Constructor for class loci.formats.in.Ecat7Reader
Constructs a new ECAT7 reader.
ecopts - Variable in class jj2000.j2k.decoder.DecoderSpecs
The Entropy decoder options specifications
ECS_GRAY - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
 
ECS_sRGB - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
The enumerated color space defined in JP2 file format.
ECS_YCC - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
 
EditTiffG - Class in loci.formats.tools
Provides a GUI for editing TIFF file comments.
EditTiffG() - Constructor for class loci.formats.tools.EditTiffG
 
EFBiffViewer - Class in loci.poi.hssf.dev
 
EFBiffViewer() - Constructor for class loci.poi.hssf.dev.EFBiffViewer
Creates a new instance of EFBiffViewer
elementInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
Ellipse - Class in ome.xml.model
 
Ellipse() - Constructor for class ome.xml.model.Ellipse
Default constructor.
Ellipse(Element, OMEModel) - Constructor for class ome.xml.model.Ellipse
Constructs Ellipse recursively from an XML DOM tree.
Ellipse(Ellipse) - Constructor for class ome.xml.model.Ellipse
Copy constructor.
EM_DOMAIN - Static variable in class loci.formats.FormatTools
Identifies the electron microscopy domain.
EmbeddedObjectRefSubRecord - Class in loci.poi.hssf.record
A sub-record within the OBJ record which stores a reference to an object stored in a separate entry within the OLE2 compound file.
EmbeddedObjectRefSubRecord() - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
EmbeddedObjectRefSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
Constructs an EmbeddedObjectRef record and sets its fields appropriately.
EmissionFilterRef - Class in ome.xml.model
 
EmissionFilterRef() - Constructor for class ome.xml.model.EmissionFilterRef
Default constructor.
EmissionFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.EmissionFilterRef
Constructs EmissionFilterRef recursively from an XML DOM tree.
EmissionFilterRef(EmissionFilterRef) - Constructor for class ome.xml.model.EmissionFilterRef
Copy constructor.
EMPTY_INTERPOLATED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord
 
EMPTY_NOT_PLOTTED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord
 
EMPTY_ZERO - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord
 
emWavelength - Variable in class loci.formats.in.BaseZeissReader
 
enableIJLogging(boolean) - Static method in class ome.scifio.common.DebugTools
 
enableIJLogging(boolean, Appender<ILoggingEvent>) - Static method in class ome.scifio.common.LogbackTools
 
enableLogging(String) - Static method in class loci.common.DebugTools
Attempts to enable SLF4J logging via Logback without an external configuration file.
enableLogging(String) - Static method in class ome.scifio.common.DebugTools
Attempts to enable SLF4J logging via logback without an external configuration file.
enableLogging(String) - Static method in class ome.scifio.common.Log4jTools
Attempts to enable SLF4J logging via log4j without an external configuration file.
enableLogging(String) - Static method in class ome.scifio.common.LogbackTools
Attempts to enable SLF4J logging via logback without an external configuration file.
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
Encodes the supplied image data, writing to the currently set ImageOutputStream.
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor
 
encode(int, int, int, BitOutputBuffer) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
Encodes information for the specified element of the tree, given the threshold and sends it to the 'out' stream.
encode1D(byte[], int, int, int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
One-dimensionally encode a row of data using CCITT Huffman compression.
encodeMainHeader() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
Write main header.
encodePacket(int, int, int, int, CBlkRateDistStats[][], int[][], BitOutputBuffer, byte[], int) - Method in class jj2000.j2k.codestream.writer.PktEncoder
Encodes a packet and returns the buffer containing the encoded packet header.
encodeRLE(byte[], int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor
Encode a row of data using Modified Huffman Compression also known as CCITT RLE (Run Lenth Encoding).
encodeT4(boolean, boolean, byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor
Encode a buffer of data using CCITT T.4 Compression also known as Group 3 facsimile compression.
encodeT6(byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor
Encode a buffer of data using CCITT T.6 Compression also known as Group 4 facsimile compression.
encodeTilePartHeader(int, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
Writes tile-part header.
ENCODING - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
 
ENCODING - Static variable in class loci.common.Constants
 
ENCODING - Static variable in class ome.scifio.common.Constants
 
encoding - Variable in class ome.scifio.io.RandomAccessInputStream
 
ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFCell
 
ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook
Deprecated.
POI will now properly handle unicode strings without forceing an encoding
ENCODING_UNCHANGED - Static variable in class loci.poi.hssf.usermodel.HSSFCell
 
ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFCell
 
ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook
Deprecated.
POI will now properly handle unicode strings without forceing an encoding
end - Variable in class loci.formats.Modulo
 
END_OF_CHAIN - Static variable in interface loci.poi.poifs.common.POIFSConstants
 
endDocument() - Method in class loci.formats.in.ND2Handler
 
endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter
Returns the string representing the end double underline
endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader
Returns the string representing the end double underline
endElement(String, String, String) - Method in class loci.formats.in.FlexReader.FlexHandler
 
endElement(String, String, String) - Method in class loci.formats.in.LeicaHandler
 
endElement(String, String, String, Attributes) - Method in class loci.formats.in.ND2Handler
 
endElement(String, String, String) - Method in class loci.formats.in.ZeissTIFFHandler
 
EndianType - Interface in jj2000.j2k.io
This interface defines constants for the two types of byte ordering: little- and big-endian.
endInsertEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
EndRecord - Class in loci.poi.hssf.record
The end record defines the end of a block of records for a (Graphing) data object.
EndRecord() - Constructor for class loci.poi.hssf.record.EndRecord
 
EndRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndRecord
Constructs a EndRecord record and sets its fields appropriately.
endReplacePixels() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
EndSubRecord - Class in loci.poi.hssf.record
The end data record is used to denote the end of the subrecords.
EndSubRecord() - Constructor for class loci.poi.hssf.record.EndSubRecord
 
EndSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndSubRecord
Constructs a End record and sets its fields appropriately.
endTime - Variable in class loci.formats.in.SDTInfo
Macro time of the last photon.
endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter
Returns the string representing the end underline
endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader
Returns the string representing the end underline
endWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
Engine - Class in mdbtools.dbengine
Engine is the entry point into a java based database backend The datastore for the data is un-important since the engine communiates with the data via a set of defined interfaces.
Engine() - Constructor for class mdbtools.dbengine.Engine
 
ensureCapacity(int) - Method in class loci.common.IniList
 
entriesPerBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock
 
entriesPerXBATBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock
 
EntropyCoder - Class in jj2000.j2k.entropy.encoder
This abstract class provides the general interface for block-based entropy encoders.
EntropyCoder(CBlkQuantDataSrcEnc) - Constructor for class jj2000.j2k.entropy.encoder.EntropyCoder
Initializes the source of quantized wavelet coefficients.
EntropyDecoder - Class in jj2000.j2k.entropy.decoder
This is the abstract class from which all entropy decoders must inherit.
EntropyDecoder(CodedCBlkDataSrcDec) - Constructor for class jj2000.j2k.entropy.decoder.EntropyDecoder
Initializes the source of compressed data.
Entry - Interface in loci.poi.poifs.filesystem
This interface provides access to an object managed by a Filesystem instance.
entry - Variable in class mdbtools.libmdb.MdbTableDef
 
EntryNode - Class in loci.poi.poifs.filesystem
Abstract implementation of Entry Extending classes should override isDocument() or isDirectory(), as appropriate Extending classes must override isDeleteOK()
EntryNode(Property, DirectoryNode) - Constructor for class loci.poi.poifs.filesystem.EntryNode
create a DocumentNode.
entrySet() - Method in class loci.common.IniTable
 
entrySet() - Method in class loci.poi.util.BinaryTree
Returns a set view of the mappings contained in this map.
entrySetByValue() - Method in class loci.poi.util.BinaryTree
Returns a set view of the mappings contained in this map.
entryToString(Object, String) - Static method in class loci.formats.tools.AmiraParameters
 
Enumeration - Interface in ome.xml.model.enums
Abstract superclass for all enumerations.
EnumerationException - Exception in ome.xml.model.enums
EnumerationException is the exception thrown when an enumeration is invalid or not found.
EnumerationException() - Constructor for exception ome.xml.model.enums.EnumerationException
 
EnumerationException(String) - Constructor for exception ome.xml.model.enums.EnumerationException
 
EnumerationException(String, Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException
 
EnumerationException(Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException
 
EnumException - Exception in loci.common.enumeration
A legacy wrapper class for ome.scifio.enumeration.EnumException.
EnumException() - Constructor for exception loci.common.enumeration.EnumException
 
EnumException(String) - Constructor for exception loci.common.enumeration.EnumException
 
EnumException(String, Throwable) - Constructor for exception loci.common.enumeration.EnumException
 
EnumException(Throwable) - Constructor for exception loci.common.enumeration.EnumException
 
EnumException - Exception in ome.scifio.enumeration
Source code: Trac, Gitweb
EnumException() - Constructor for exception ome.scifio.enumeration.EnumException
 
EnumException(String) - Constructor for exception ome.scifio.enumeration.EnumException
 
EnumException(String, Throwable) - Constructor for exception ome.scifio.enumeration.EnumException
 
EnumException(Throwable) - Constructor for exception ome.scifio.enumeration.EnumException
 
ENVELOPE_10_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
ENVELOPE_CS_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
ENVELOPE_DL_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
ENVELOPE_MONARCH_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
EOC - Static variable in interface jj2000.j2k.codestream.Markers
End of codestream (EOC): 0xFFD9
eof() - Method in class loci.poi.poifs.storage.RawDataBlock
When we read the data, did we hit end of file?
EOF_ERROR_MSG - Static variable in class loci.common.AbstractNIOHandle
Error message to be used when instantiating an EOFException.
EOF_ERROR_MSG - Static variable in class ome.scifio.io.AbstractNIOHandle
Error message to be used when instantiating an EOFException.
eofLoc - Variable in class loci.poi.hssf.model.Sheet
 
EOFRecord - Class in loci.poi.hssf.record
End Of File record.
EOFRecord() - Constructor for class loci.poi.hssf.record.EOFRecord
 
EOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EOFRecord
Constructs a EOFRecord record and sets its fields appropriately.
EOI - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
EOL - Static variable in class loci.poi.util.HexDump
 
EPH - Static variable in interface jj2000.j2k.codestream.Markers
End of packet header (EPH): 0xFF92
EPH_LENGTH - Static variable in interface jj2000.j2k.codestream.Markers
Length of EPH marker (in bytes)
ephs - Variable in class jj2000.j2k.decoder.DecoderSpecs
The End of Packet Headers (EPH) markers specifications
EPOCH_DIFF - Static variable in class loci.poi.hpsf.Util
The difference between the Windows epoch (1601-01-01 00:00:00) and the Unix epoch (1970-01-01 00:00:00) in milliseconds: 11644473600000L.
EPSILON - Static variable in class loci.common.Constants
 
EPSILON - Static variable in class ome.scifio.common.Constants
 
EPSReader - Class in loci.formats.in
Reader is the file format reader for Encapsulated PostScript (EPS) files.
EPSReader() - Constructor for class loci.formats.in.EPSReader
Constructs a new EPS reader.
EPSWriter - Class in loci.formats.out
EPSWriter is the file format writer for Encapsulated PostScript (EPS) files.
EPSWriter() - Constructor for class loci.formats.out.EPSWriter
 
epxDiv - Variable in class loci.formats.in.SDTInfo
 
equal(byte[], byte[]) - Static method in class loci.poi.hpsf.Util
Checks whether two byte arrays a and b are equal.
EqualPtg - Class in loci.poi.hssf.record.formula
 
EqualPtg() - Constructor for class loci.poi.hssf.record.formula.EqualPtg
Creates new AddPtg
EqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.EqualPtg
 
equalReaders(IFormatReader, IFormatReader) - Static method in class loci.formats.FormatTools
Check if the two given readers are equal.
equals(Object) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
 
equals(Object) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
 
equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Tests if the 'obj' object is the same filter as this one.
equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Tests if the 'obj' object is the same filter as this one.
equals(Object) - Method in class loci.common.AbstractNIOHandle
 
equals(Object) - Method in class loci.common.adapter.CodedEnumAdapter.LegacyWrapper
 
equals(Object) - Method in class loci.common.adapter.CodedEnumAdapter.ModernWrapper
 
equals(Object) - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper
 
equals(Object) - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper
 
equals(Object) - Method in class loci.common.adapter.StatusListenerAdapter.LegacyWrapper
 
equals(Object) - Method in class loci.common.adapter.StatusListenerAdapter.ModernWrapper
 
equals(Object) - Method in class loci.common.adapter.StatusReporterAdapter.LegacyWrapper
 
equals(Object) - Method in class loci.common.adapter.StatusReporterAdapter.ModernWrapper
 
equals(Object) - Method in class loci.common.CBZip2InputStream
 
equals(Object) - Method in class loci.common.CRC
 
equals(Object) - Method in exception loci.common.enumeration.EnumException
 
equals(Object) - Method in class loci.common.FileHandle
 
equals(Object) - Method in exception loci.common.HandleException
 
equals(Object) - Method in class loci.common.IniList
 
equals(Object) - Method in class loci.common.IniParser
 
equals(Object) - Method in class loci.common.IniTable
 
equals(Object) - Method in class loci.common.IniWriter
 
equals(Object) - Method in class loci.common.Location
 
equals(Object) - Method in class loci.common.RandomAccessInputStream
 
equals(Object) - Method in class loci.common.RandomAccessOutputStream
 
equals(Object) - Method in class loci.common.ReflectedUniverse
 
equals(Object) - Method in exception loci.common.ReflectException
 
equals(Object) - Method in class loci.common.Region
 
equals(Object) - Method in class loci.common.StreamHandle
 
equals(Object) - Method in class loci.common.xml.BaseHandler
 
equals(Object) - Method in class loci.common.xml.ParserErrorHandler
 
equals(Object) - Method in class loci.common.xml.ValidationErrorHandler
 
equals(Node, Node) - Method in class loci.formats.services.OMEXMLServiceImpl
Compares two Elements for equality.
equals(Object) - Method in class loci.formats.tiff.TiffRational
Indicates whether some other object is "equal to" this one.
equals(Object) - Method in class loci.plugins.config.FormatEntry
 
equals(Object) - Method in class loci.plugins.prefs.OptionsList
 
equals(Object) - Method in class loci.poi.ddf.EscherComplexProperty
Determine whether this property is equal to another property.
equals(Object) - Method in class loci.poi.ddf.EscherSimpleProperty
Returns true if one escher property is equal to another.
equals(Object) - Method in class loci.poi.hpsf.ClassID
Checks whether this ClassID is equal to another object.
equals(Object) - Method in class loci.poi.hpsf.Property
Compares two properties.
equals(Object) - Method in class loci.poi.hpsf.PropertySet
Returns true if the PropertySet is equal to the specified parameter, else false.
equals(Object) - Method in class loci.poi.hpsf.Section
Checks whether this section is equal to another object.
equals(Object) - Method in class loci.poi.hpsf.SpecialPropertySet
 
equals(Collection, Collection) - Static method in class loci.poi.hpsf.Util
Checks whether two collections are equal.
equals(Object[], Object[]) - Static method in class loci.poi.hpsf.Util
Compares to object arrays with regarding the objects' order.
equals(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
equals(Object) - Method in class loci.poi.hssf.record.BlankRecord
 
equals(Object) - Method in class loci.poi.hssf.record.BoolErrRecord
 
equals(Object) - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
equals(Object) - Method in class loci.poi.hssf.record.FormulaRecord
 
equals(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
equals(Object) - Method in class loci.poi.hssf.record.NumberRecord
 
equals(Object) - Method in class loci.poi.hssf.record.RowRecord
 
equals(Object) - Method in class loci.poi.hssf.record.SSTRecord
 
equals(Object) - Method in class loci.poi.hssf.record.UnicodeString
Our handling of equals is inconsistent with compareTo.
equals(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun
 
equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
 
equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow
 
equals(Region) - Method in class loci.poi.hssf.util.Region
 
equals(Object) - Method in class loci.poi.poifs.filesystem.DocumentDescriptor
equality.
equals(Object) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath
equality.
equals(Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator
Object equality, implemented as object identity
equals(Object) - Method in class loci.poi.util.DoubleList
Compares the specified object with this list for equality.
equals(Object) - Method in class loci.poi.util.IntList
Compares the specified object with this list for equality.
equals(Object) - Method in class loci.poi.util.ShortList
Compares the specified object with this list for equality.
equals(Object) - Method in class loci.tests.testng.Configuration
 
equals(Object) - Method in class mdbtools.dbengine.sql.Condition
 
EQUALS - Static variable in class mdbtools.dbengine.sql.Equation
 
equals(Object) - Method in class mdbtools.dbengine.sql.Equation
 
equals(Object) - Method in class mdbtools.dbengine.sql.FQColumn
 
equals(Object) - Method in class mdbtools.dbengine.sql.Join
 
equals(Object) - Method in class ome.scifio.common.Region
 
equals(Object) - Method in class ome.scifio.io.Location
 
equals(Object) - Method in class ome.xml.model.primitives.PrimitiveType
 
equalsContents(Object) - Method in class loci.poi.hpsf.CustomProperty
Compares two custom properties for equality.
equalStrips - Variable in class loci.formats.in.MinimalTiffReader
 
Equation - Class in mdbtools.dbengine.sql
 
Equation() - Constructor for class mdbtools.dbengine.sql.Equation
 
ERFListener - Interface in loci.poi.hssf.eventmodel
An ERFListener is registered with the EventRecordFactory.
erode() - Method in class loci.plugins.util.RecordedImageProcessor
 
ERROR - Static variable in interface jj2000.j2k.util.MsgLogger
Severity of message.
error(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler
 
error(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler
 
ERROR - Static variable in class loci.poi.util.POILogger
 
error(SAXParseException) - Method in class ome.scifio.xml.ParserErrorHandler
 
error(SAXParseException) - Method in class ome.scifio.xml.ValidationErrorHandler
 
ERROR_DIV_0 - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_NA - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_NAME - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_NULL - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_NUM - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_REF - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_VALUE - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ErrPtg - Class in loci.poi.hssf.record.formula
 
ErrPtg() - Constructor for class loci.poi.hssf.record.formula.ErrPtg
Creates new ErrPtg
ErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ErrPtg
 
ers - Variable in class jj2000.j2k.decoder.DecoderSpecs
The error resilience specifications concerning the entropy decoder
ERS_SEG_SYMBOLS - Static variable in interface jj2000.j2k.codestream.Markers
The "segmentation symbols used" flag within Sers: 2
ERS_SOP - Static variable in interface jj2000.j2k.codestream.Markers
The "SOP marker segments used" flag within Sers: 1
escapeXML(String) - Static method in class loci.common.xml.XMLTools
Escape special characters.
escapeXML(String) - Static method in class ome.scifio.xml.XMLTools
Escape special characters.
EscherAggregate - Class in loci.poi.hssf.record
This class is used to aggregate the MSODRAWING and OBJ record combinations.
EscherAggregate(DrawingManager2) - Constructor for class loci.poi.hssf.record.EscherAggregate
 
EscherArrayProperty - Class in loci.poi.ddf
Escher array properties are the most wierd construction ever invented with all sorts of special cases.
EscherArrayProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty
 
EscherArrayProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty
 
EscherBitmapBlip - Class in loci.poi.ddf
 
EscherBitmapBlip() - Constructor for class loci.poi.ddf.EscherBitmapBlip
 
EscherBlipRecord - Class in loci.poi.ddf
 
EscherBlipRecord() - Constructor for class loci.poi.ddf.EscherBlipRecord
 
EscherBlipWMFRecord - Class in loci.poi.ddf
The blip record is used to hold details about large binary objects that occur in escher such as JPEG, GIF, PICT and WMF files.
EscherBlipWMFRecord() - Constructor for class loci.poi.ddf.EscherBlipWMFRecord
 
EscherBoolProperty - Class in loci.poi.ddf
Represents a boolean property.
EscherBoolProperty(short, int) - Constructor for class loci.poi.ddf.EscherBoolProperty
Create an instance of an escher boolean property.
EscherBSERecord - Class in loci.poi.ddf
The BSE record is related closely to the EscherBlipRecord and stores extra information about the blip.
EscherBSERecord() - Constructor for class loci.poi.ddf.EscherBSERecord
 
EscherChildAnchorRecord - Class in loci.poi.ddf
The escher child achor record is used to specify the position of a shape under an existing group.
EscherChildAnchorRecord() - Constructor for class loci.poi.ddf.EscherChildAnchorRecord
 
EscherClientAnchorRecord - Class in loci.poi.ddf
The escher client anchor specifies which rows and cells the shape is bound to as well as the offsets within those cells.
EscherClientAnchorRecord() - Constructor for class loci.poi.ddf.EscherClientAnchorRecord
 
EscherClientDataRecord - Class in loci.poi.ddf
The EscherClientDataRecord is used to store client specific data about the position of a shape within a container.
EscherClientDataRecord() - Constructor for class loci.poi.ddf.EscherClientDataRecord
 
EscherComplexProperty - Class in loci.poi.ddf
A complex property differs from a simple property in that the data can not fit inside a 32 bit integer.
EscherComplexProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty
Create a complex property using the property id and a byte array containing the complex data value.
EscherComplexProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty
Create a complex property using the property number, a flag to indicate whether this is a blip reference and the complex property data.
EscherContainerRecord - Class in loci.poi.ddf
Escher container records store other escher records as children.
EscherContainerRecord() - Constructor for class loci.poi.ddf.EscherContainerRecord
 
EscherDggRecord - Class in loci.poi.ddf
This record defines the drawing groups used for a particular sheet.
EscherDggRecord() - Constructor for class loci.poi.ddf.EscherDggRecord
 
EscherDggRecord.FileIdCluster - Class in loci.poi.ddf
 
EscherDggRecord.FileIdCluster(int, int) - Constructor for class loci.poi.ddf.EscherDggRecord.FileIdCluster
 
EscherDgRecord - Class in loci.poi.ddf
This record simply holds the number of shapes in the drawing group and the last shape id used for this drawing group.
EscherDgRecord() - Constructor for class loci.poi.ddf.EscherDgRecord
 
EscherDump - Class in loci.poi.ddf
Used to dump the contents of escher records to a PrintStream.
EscherDump() - Constructor for class loci.poi.ddf.EscherDump
 
EscherGraphics - Class in loci.poi.hssf.usermodel
Translates Graphics calls into escher calls.
EscherGraphics(HSSFShapeGroup, HSSFWorkbook, Color, float) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics
Construct an escher graphics object.
EscherGraphics2d - Class in loci.poi.hssf.usermodel
Translates Graphics2d calls into escher calls.
EscherGraphics2d(EscherGraphics) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics2d
Constructs one escher graphics object from an escher graphics object.
EscherMetafileBlip - Class in loci.poi.ddf
 
EscherMetafileBlip() - Constructor for class loci.poi.ddf.EscherMetafileBlip
 
EscherOptRecord - Class in loci.poi.ddf
The opt record is used to store property values for a shape.
EscherOptRecord() - Constructor for class loci.poi.ddf.EscherOptRecord
 
EscherPictBlip - Class in loci.poi.ddf
 
EscherPictBlip() - Constructor for class loci.poi.ddf.EscherPictBlip
 
EscherProperties - Class in loci.poi.ddf
Provides a list of all known escher properties including the description and type.
EscherProperties() - Constructor for class loci.poi.ddf.EscherProperties
 
EscherProperty - Class in loci.poi.ddf
This is the abstract base class for all escher properties.
EscherProperty(short) - Constructor for class loci.poi.ddf.EscherProperty
The id is distinct from the actual property number.
EscherProperty(short, boolean, boolean) - Constructor for class loci.poi.ddf.EscherProperty
Constructs a new escher property.
EscherPropertyFactory - Class in loci.poi.ddf
Generates a property given a reference into the byte array storing that property.
EscherPropertyFactory() - Constructor for class loci.poi.ddf.EscherPropertyFactory
 
EscherPropertyMetaData - Class in loci.poi.ddf
This class stores the type and description of an escher property.
EscherPropertyMetaData(String) - Constructor for class loci.poi.ddf.EscherPropertyMetaData
 
EscherPropertyMetaData(String, byte) - Constructor for class loci.poi.ddf.EscherPropertyMetaData
 
EscherRecord - Class in loci.poi.ddf
The base abstract record from which all escher records are defined.
EscherRecord() - Constructor for class loci.poi.ddf.EscherRecord
Create a new instance
EscherRecordFactory - Interface in loci.poi.ddf
The escher record factory interface allows for the creation of escher records from a pointer into a data array.
EscherRGBProperty - Class in loci.poi.ddf
A color property.
EscherRGBProperty(short, int) - Constructor for class loci.poi.ddf.EscherRGBProperty
 
EscherSerializationListener - Interface in loci.poi.ddf
Interface for listening to escher serialization events.
EscherShapePathProperty - Class in loci.poi.ddf
Defines the constants for the various possible shape paths.
EscherShapePathProperty(short, int) - Constructor for class loci.poi.ddf.EscherShapePathProperty
 
EscherSimpleProperty - Class in loci.poi.ddf
A simple property is of fixed length and as a property number in addition to a 32-bit value.
EscherSimpleProperty(short, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty
The id is distinct from the actual property number.
EscherSimpleProperty(short, boolean, boolean, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty
Constructs a new escher property.
EscherSpgrRecord - Class in loci.poi.ddf
The spgr record defines information about a shape group.
EscherSpgrRecord() - Constructor for class loci.poi.ddf.EscherSpgrRecord
 
EscherSplitMenuColorsRecord - Class in loci.poi.ddf
A list of the most recently used colours for the drawings contained in this document.
EscherSplitMenuColorsRecord() - Constructor for class loci.poi.ddf.EscherSplitMenuColorsRecord
 
EscherSpRecord - Class in loci.poi.ddf
Together the the EscherOptRecord this record defines some of the basic properties of a shape.
EscherSpRecord() - Constructor for class loci.poi.ddf.EscherSpRecord
 
EscherTextboxRecord - Class in loci.poi.ddf
Holds data from the parent application.
EscherTextboxRecord() - Constructor for class loci.poi.ddf.EscherTextboxRecord
 
evalFile(String) - Method in class loci.formats.in.ZeissTIFFReader
Evaluate the metadata of a TIFF/XML file collection, and return this to the user.
EventRecordFactory - Class in loci.poi.hssf.eventmodel
Event-based record factory.
EventRecordFactory() - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory
Construct an abortable EventRecordFactory.
EventRecordFactory(boolean) - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory
Create an EventRecordFactory
ExcelExtractor - Class in loci.poi.hssf.extractor
A text extractor for Excel files.
ExcelExtractor(HSSFWorkbook) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor
 
ExcelExtractor(POIFSFileSystem) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor
 
ExcitationFilterRef - Class in ome.xml.model
 
ExcitationFilterRef() - Constructor for class ome.xml.model.ExcitationFilterRef
Default constructor.
ExcitationFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExcitationFilterRef
Constructs ExcitationFilterRef recursively from an XML DOM tree.
ExcitationFilterRef(ExcitationFilterRef) - Constructor for class ome.xml.model.ExcitationFilterRef
Copy constructor.
exec(String) - Method in class loci.common.ReflectedUniverse
Executes a command in the universe.
exec(String) - Method in class ome.scifio.common.ReflectedUniverse
Executes a command in the universe.
execute() - Method in class loci.plugins.in.ImportProcess
Performs the import preparation process, notifying status listeners at each step.
execute(SQL) - Method in class mdbtools.dbengine.Engine
execute is used to tell the engine to do something
execute(Object) - Method in interface mdbtools.dbengine.functions.Aggregate
 
execute(Object) - Method in class mdbtools.dbengine.functions.ConCat
take two strings stick them together and return the result
execute(Object) - Method in class mdbtools.dbengine.functions.Count
 
execute(Object) - Method in interface mdbtools.dbengine.functions.Function
given the data for a column execute the function
execute(Object) - Method in class mdbtools.dbengine.functions.Length
execute the length function of a string
execute(Object) - Method in class mdbtools.dbengine.functions.Lower
convert column to lowercase
execute(Object) - Method in class mdbtools.dbengine.functions.Max
 
execute(Object) - Method in class mdbtools.dbengine.functions.Min
 
execute(Object) - Method in class mdbtools.dbengine.functions.Sum
 
execute(Object) - Method in class mdbtools.dbengine.functions.Upper
convert column to uppercase
execute() - Method in class mdbtools.dbengine.SelectEngine
 
executeCommand(String) - Method in class loci.formats.itk.ITKBridgePipes
Executes the given command line.
EXECUTIVE_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
EXIF - Static variable in class loci.formats.tiff.IFD
 
EXIF_VERSION - Static variable in class loci.formats.tiff.IFD
 
EXIF_VERSION_2_1 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
An array of bytes containing the values {'0', '2', '1', '0'} to be used with the "EXIFVersion" tag to indicate EXIF version 2.1.
EXIF_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
An array of bytes containing the values {'0', '2', '2', '0'} to be used with the "EXIFVersion" tag to indicate EXIF version 2.2.
EXIFGPSTagSet - Class in com.sun.media.imageio.plugins.tiff
A class representing the tags found in an EXIF GPS Info IFD.
EXIFInteroperabilityTagSet - Class in com.sun.media.imageio.plugins.tiff
A class representing the tags found in an EXIF Interoperability IFD.
EXIFParentTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff
A class containing the TIFF tags used to reference the EXIF and GPS IFDs.
EXIFTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff
A class representing the tags found in an EXIF IFD.
exists() - Method in class loci.common.Location
Returns whether or not the pathname exists.
exists() - Method in class ome.scifio.io.Location
Returns whether or not the pathname exists.
exit() - Method in class loci.formats.itk.ITKBridgePipes
 
exit() - Method in class loci.formats.tools.EditTiffG
 
exp - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams
The quantization step "exponent" value, for each resolution level and subband, as it appears in the codestream.
exp() - Method in class loci.plugins.util.RecordedImageProcessor
 
expandCode(byte[], int, short, int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
If expanded data doesnt fit into array only what will fit is written to buf and the return value indicates how much of the expanded code has been written to the buf.
expandColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
expandRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
Experiment - Class in ome.xml.model
 
Experiment() - Constructor for class ome.xml.model.Experiment
Default constructor.
Experiment(Element, OMEModel) - Constructor for class ome.xml.model.Experiment
Constructs Experiment recursively from an XML DOM tree.
Experiment(Experiment) - Constructor for class ome.xml.model.Experiment
Copy constructor.
Experimenter - Class in ome.xml.model
 
Experimenter() - Constructor for class ome.xml.model.Experimenter
Default constructor.
Experimenter(Element, OMEModel) - Constructor for class ome.xml.model.Experimenter
Constructs Experimenter recursively from an XML DOM tree.
Experimenter(Experimenter) - Constructor for class ome.xml.model.Experimenter
Copy constructor.
ExperimenterGroup - Class in ome.xml.model
 
ExperimenterGroup() - Constructor for class ome.xml.model.ExperimenterGroup
Default constructor.
ExperimenterGroup(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroup
Constructs ExperimenterGroup recursively from an XML DOM tree.
ExperimenterGroup(ExperimenterGroup) - Constructor for class ome.xml.model.ExperimenterGroup
Copy constructor.
ExperimenterGroupRef - Class in ome.xml.model
 
ExperimenterGroupRef() - Constructor for class ome.xml.model.ExperimenterGroupRef
Default constructor.
ExperimenterGroupRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroupRef
Constructs ExperimenterGroupRef recursively from an XML DOM tree.
ExperimenterGroupRef(ExperimenterGroupRef) - Constructor for class ome.xml.model.ExperimenterGroupRef
Copy constructor.
ExperimenterRef - Class in ome.xml.model
 
ExperimenterRef() - Constructor for class ome.xml.model.ExperimenterRef
Default constructor.
ExperimenterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterRef
Constructs ExperimenterRef recursively from an XML DOM tree.
ExperimenterRef(ExperimenterRef) - Constructor for class ome.xml.model.ExperimenterRef
Copy constructor.
ExperimentRef - Class in ome.xml.model
 
ExperimentRef() - Constructor for class ome.xml.model.ExperimentRef
Default constructor.
ExperimentRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimentRef
Constructs ExperimentRef recursively from an XML DOM tree.
ExperimentRef(ExperimentRef) - Constructor for class ome.xml.model.ExperimentRef
Copy constructor.
ExperimentType - Enum in ome.xml.model.enums
 
ExperimentTypeEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for ExperimentType.
ExperimentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler
 
EXPIRED_QT_MSG - Static variable in class loci.formats.gui.LegacyQTTools
 
expiredQT - Variable in class loci.formats.gui.LegacyQTTools
Flag indicating QuickTime for Java has expired.
Exporter - Class in loci.plugins.out
Core logic for the Bio-Formats Exporter ImageJ plugin.
Exporter(LociExporter, ImagePlus) - Constructor for class loci.plugins.out.Exporter
 
EXPOSURE_BIAS_VALUE - Static variable in class loci.formats.tiff.IFD
 
EXPOSURE_INDEX - Static variable in class loci.formats.tiff.IFD
 
EXPOSURE_MODE - Static variable in class loci.formats.tiff.IFD
 
EXPOSURE_MODE_AUTO_BRACKET - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureMode" tag.
EXPOSURE_MODE_AUTO_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureMode" tag.
EXPOSURE_MODE_MANUAL_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureMode" tag.
EXPOSURE_PROGRAM - Static variable in class loci.formats.tiff.IFD
 
EXPOSURE_PROGRAM_ACTION_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_PROGRAM_APERTURE_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_PROGRAM_CREATIVE_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_PROGRAM_LANDSCAPE_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_PROGRAM_MANUAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_PROGRAM_MAX_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_PROGRAM_NORMAL_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_PROGRAM_NOT_DEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_PROGRAM_PORTRAIT_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_PROGRAM_SHUTTER_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "ExposureProgram" tag.
EXPOSURE_TIME - Static variable in class loci.formats.tiff.IFD
EXIF tags.
exposureTime - Variable in class loci.formats.in.BaseZeissReader
 
ExpPtg - Class in loci.poi.hssf.record.formula
 
ExpPtg() - Constructor for class loci.poi.hssf.record.formula.ExpPtg
Creates new ExpPtg
ExpPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ExpPtg
Creates new ExpPtg
ExtendedFormatRecord - Class in loci.poi.hssf.record
Title: Extended Format Record Description: Probably one of the more complex records.
ExtendedFormatRecord() - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord
Constructor ExtendedFormatRecord
ExtendedFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord
Constructs an ExtendedFormat record and sets its fields appropriately.
ExtensionFileFilter - Class in loci.formats.gui
A file filter based on file extensions, for use with a JFileChooser.
ExtensionFileFilter(String, String) - Constructor for class loci.formats.gui.ExtensionFileFilter
Constructs a new filter that accepts the given extension.
ExtensionFileFilter(String[], String) - Constructor for class loci.formats.gui.ExtensionFileFilter
Constructs a new filter that accepts the given extensions.
extensions - Variable in class loci.plugins.macro.MacroFunctions
 
External - Class in ome.xml.model
 
External() - Constructor for class ome.xml.model.External
Default constructor.
External(Element, OMEModel) - Constructor for class ome.xml.model.External
Constructs External recursively from an XML DOM tree.
External(External) - Constructor for class ome.xml.model.External
Copy constructor.
externSheet - Variable in class loci.poi.hssf.model.Workbook
Holds the Extern Sheet with references to bound sheets
ExternSheetRecord - Class in loci.poi.hssf.record
Title: Extern Sheet
ExternSheetRecord() - Constructor for class loci.poi.hssf.record.ExternSheetRecord
 
ExternSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetRecord
Constructs a Extern Sheet record and sets its fields appropriately.
ExternSheetSubRecord - Class in loci.poi.hssf.record
Title: A sub Record for Extern Sheet
ExternSheetSubRecord() - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord
a Constractor for making new sub record
ExternSheetSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord
Constructs a Extern Sheet Sub Record record and sets its fields appropriately.
extHdrFields - Variable in class loci.formats.in.DeltavisionReader
Initialize an array of Extended Header Field structures.
EXTRA_SAMPLES - Static variable in class loci.formats.tiff.IFD
 
EXTRA_SAMPLES_ASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "ExtraSamples" tag.
EXTRA_SAMPLES_UNASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "ExtraSamples" tag.
EXTRA_SAMPLES_UNSPECIFIED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "ExtraSamples" tag.
extract(ListManagedBlock[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock
create a list of SmallDocumentBlock's from raw data
extractCoreMetaData() - Method in class loci.formats.tools.AmiraParameters
 
extractText(byte[]) - Static method in class mdbtools.libmdb.Util
 
extractTilePartMarkSeg(short, RandomAccessIO, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
This method extracts a marker segment in a tile-part header and stores it into a byte buffer for the second pass.
extraLength - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
 
extraSamples - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The value of the ExtraSamples tag.
ExtSSTInfoSubRecord - Class in loci.poi.hssf.record
Extended SST table info subrecord
ExtSSTInfoSubRecord() - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord
Creates new ExtSSTInfoSubRecord
ExtSSTInfoSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
ExtSSTRecord - Class in loci.poi.hssf.record
Title: Extended Static String Table
ExtSSTRecord() - Constructor for class loci.poi.hssf.record.ExtSSTRecord
 
ExtSSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTRecord
Constructs a EOFRecord record and sets its fields appropriately.
exWavelength - Variable in class loci.formats.in.BaseZeissReader
 

F

f - Variable in class mdbtools.libmdb.MdbHandle
 
F_KEY - Static variable in class loci.formats.in.LiFlimReader
 
F_NUMBER - Static variable in class loci.formats.tiff.IFD
 
FacilityManager - Class in jj2000.j2k.util
This class manages common facilities for mutithreading environments, It can register different facilities for each thread, and also a default one, so that they can be referred by static methods, while possibly having different ones for different threads.
FacilityManager() - Constructor for class jj2000.j2k.util.FacilityManager
 
FAKE_EXT - Static variable in class loci.formats.ResourceNamer
 
FakeImage - Class in loci.formats.tools
Generates fake image structures.
FakeImage(Location) - Constructor for class loci.formats.tools.FakeImage
 
FakeReader - Class in loci.formats.in
FakeReader is the file format reader for faking input data.
FakeReader() - Constructor for class loci.formats.in.FakeReader
Constructs a new fake reader.
FALSE - Static variable in class loci.poi.hssf.record.UseSelFSRecord
 
falseColor - Variable in class loci.formats.CoreMetadata
Indicates whether or not we can ignore the color map (if present).
fastCodeSymbols(int, int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
This method performs the coding of the symbol 'bit', using context 'ctxt', 'n' times, using the MQ-coder speedup mode if possible.
fastDecodeSymbols(int[], int, int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder
Decodes 'n' symbols from the bit stream using the same context 'ctxt'.
FATAL - Static variable in class loci.poi.util.POILogger
 
fatalError(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler
 
fatalError(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler
 
fatalError(SAXParseException) - Method in class ome.scifio.xml.ParserErrorHandler
 
fatalError(SAXParseException) - Method in class ome.scifio.xml.ValidationErrorHandler
 
FaxTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff
A class representing the extra tags found in a TIFF-F (RFC 2036) file.
FCS_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo
For .sdt files created in FIFO mode (setup, data blocks = Decay, FCS, FIDA, FILDA & MCS curves for each used routing channel).
fcsDecayCalc - Variable in class loci.formats.in.SDTInfo
Bit 0 = 1 - decay curve calculated.
fcsPoints - Variable in class loci.formats.in.SDTInfo
No of FCS values.
fcsType - Variable in class loci.formats.in.SDTInfo
0 - linear FCS with log binning (100 bins/log) when bit 15 = 1 (0x8000) - Multi-Tau FCS where bits 14-0 = ktau parameter.
fd - Variable in class mdbtools.libmdb.MdbFile
 
FEI_MAGIC_STRING - Static variable in class loci.formats.in.FEIReader
 
FEIReader - Class in loci.formats.in
FEIReader is the file format reader for FEI and Philips .img files.
FEIReader() - Constructor for class loci.formats.in.FEIReader
Constructs a new FEI reader.
FEITiffReader - Class in loci.formats.in
FEITiffReader is the file format reader for TIFF files produced by various FEI software.
FEITiffReader() - Constructor for class loci.formats.in.FEITiffReader
 
fetchBlocks(int) - Method in interface loci.poi.poifs.storage.BlockList
get the blocks making up a particular stream in the list.
fidaPoints - Variable in class loci.formats.in.SDTInfo
No of FIDA values.
fidaTime - Variable in class loci.formats.in.SDTInfo
Interval time [ms] for FIDA histogram.
FIELD - Static variable in class loci.formats.ResourceNamer
 
field_1_gridset_flag - Variable in class loci.poi.hssf.record.GridsetRecord
 
field_1_num_args - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
field_1_precision - Variable in class loci.poi.hssf.record.PrecisionRecord
 
field_1_recalcids - Variable in class loci.poi.hssf.record.RecalcIdRecord
 
field_1_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_1_stream_id_offset - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_1_tabids - Variable in class loci.poi.hssf.record.TabIdRecord
 
field_1_zero - Variable in class loci.poi.hssf.record.IndexRecord
 
field_2_first_row - Variable in class loci.poi.hssf.record.IndexRecord
 
field_2_fnc_index - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
field_2_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_2_unknown - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_3_last_row_add1 - Variable in class loci.poi.hssf.record.IndexRecord
 
field_3_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_3_unicode_len - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_4_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_4_unicode_flag - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_4_zero - Variable in class loci.poi.hssf.record.IndexRecord
 
field_5_dbcells - Variable in class loci.poi.hssf.record.IndexRecord
 
field_5_ole_classname - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_5_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_6_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_6_stream_id - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_7_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_pictureData - Variable in class loci.poi.ddf.EscherBlipRecord
 
fifoTyp - Variable in class loci.formats.in.SDTInfo
 
Filament - Class in ome.xml.model
 
Filament() - Constructor for class ome.xml.model.Filament
Default constructor.
Filament(Element, OMEModel) - Constructor for class ome.xml.model.Filament
Constructs Filament recursively from an XML DOM tree.
Filament(Filament) - Constructor for class ome.xml.model.Filament
Copy constructor.
FilamentType - Enum in ome.xml.model.enums
 
FilamentTypeEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for FilamentType.
FilamentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilamentTypeEnumHandler
 
fildaPoints - Variable in class loci.formats.in.SDTInfo
No of FILDA values.
fildaTime - Variable in class loci.formats.in.SDTInfo
Interval time [ms] for FILDA histogram.
file() - Static method in class loci.poi.hssf.usermodel.HSSFFooter
Returns the string representing the current file name
file() - Static method in class loci.poi.hssf.usermodel.HSSFHeader
Returns the string representing the current file name
File - Class in mdbtools.jdbc2
 
File(String) - Constructor for class mdbtools.jdbc2.File
 
file - Class in mdbtools.libmdb
 
file() - Constructor for class mdbtools.libmdb.file
 
file - Variable in class ome.scifio.io.NIOInputStream
The file.
file - Variable in class ome.scifio.io.RandomAccessInputStream
The file name.
file - Variable in class ome.scifio.io.StreamHandle
Name of the open stream.
FILE_SOURCE - Static variable in class loci.formats.tiff.IFD
 
FILE_SOURCE_DSC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "FileSource" tag.
FILE_TYPE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
FileAnnotation - Class in ome.xml.model
 
FileAnnotation() - Constructor for class ome.xml.model.FileAnnotation
Default constructor.
FileAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.FileAnnotation
Constructs FileAnnotation recursively from an XML DOM tree.
FileAnnotation(FileAnnotation) - Constructor for class ome.xml.model.FileAnnotation
Copy constructor.
FileBitstreamReaderAgent - Class in jj2000.j2k.codestream.reader
This class reads the bit stream (with the help of HeaderDecoder for tile headers and PktDecoder for packets header and body) and retrives location of all code-block's codewords.
FileBitstreamReaderAgent(HeaderDecoder, RandomAccessIO, DecoderSpecs, J2KImageReadParamJava, boolean, HeaderInfo) - Constructor for class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
Reads all tiles headers and keep offset of their first packet.
FileChannelImageInputStream - Class in com.sun.media.imageio.stream
A class which implements ImageInputStream using a FileChannel as the eventual data source.
FileChannelImageInputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageInputStream
Constructs a FileChannelImageInputStream from a FileChannel.
FileChannelImageOutputStream - Class in com.sun.media.imageio.stream
A class which implements ImageOutputStream using a FileChannel as the eventual data destination.
FileChannelImageOutputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageOutputStream
Constructs a FileChannelImageOutputStream from a FileChannel.
FileCodestreamWriter - Class in jj2000.j2k.codestream.writer
This class implements a CodestreamWriter for Java streams.
FileCodestreamWriter(File, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter
Opens the file 'file' for writing the bit stream, using the 'he' header encoder.
FileCodestreamWriter(String, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter
Opens the file named 'fname' for writing the bit stream, using the 'he' header encoder.
FileCodestreamWriter(OutputStream, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter
Uses the output stream 'os' for writing the bit stream, using the 'he' header encoder.
FileFormatBoxes - Interface in jj2000.j2k.fileformat
This class contains all the markers used in the JPEG 2000 Part I file format
FileFormatReader - Class in jj2000.j2k.fileformat.reader
This class reads the file format wrapper that may or may not exist around a valid JPEG 2000 codestream.
FileFormatReader(RandomAccessIO, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.reader.FileFormatReader
The constructor of the FileFormatReader
FileFormatWriter - Class in jj2000.j2k.fileformat.writer
This class writes the file format wrapper that may or may not exist around a valid JPEG 2000 codestream.
FileFormatWriter(File, ImageOutputStream, int, int, int, int[], int, ColorModel, SampleModel, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.writer.FileFormatWriter
The constructor of the FileFormatWriter.
fileGroupOption(String) - Method in class loci.formats.FormatReader
 
fileGroupOption(String) - Method in interface loci.formats.IFormatReader
Returns an int indicating that we cannot, must, or might group the files in a given dataset.
fileGroupOption(String) - Method in class loci.formats.ImageReader
 
fileGroupOption(String) - Method in class loci.formats.in.AFIReader
 
fileGroupOption(String) - Method in class loci.formats.in.AnalyzeReader
 
fileGroupOption(String) - Method in class loci.formats.in.APLReader
 
fileGroupOption(String) - Method in class loci.formats.in.BDReader
 
fileGroupOption(String) - Method in class loci.formats.in.BioRadReader
 
fileGroupOption(String) - Method in class loci.formats.in.BrukerReader
 
fileGroupOption(String) - Method in class loci.formats.in.CellomicsReader
 
fileGroupOption(String) - Method in class loci.formats.in.CellSensReader
 
fileGroupOption(String) - Method in class loci.formats.in.CellVoyagerReader
 
fileGroupOption(String) - Method in class loci.formats.in.DicomReader
 
fileGroupOption(String) - Method in class loci.formats.in.FlexReader
 
fileGroupOption(String) - Method in class loci.formats.in.FujiReader
 
fileGroupOption(String) - Method in class loci.formats.in.FV1000Reader
 
fileGroupOption(String) - Method in class loci.formats.in.HitachiReader
 
fileGroupOption(String) - Method in class loci.formats.in.ICSReader
 
fileGroupOption(String) - Method in class loci.formats.in.ImagicReader
 
fileGroupOption(String) - Method in class loci.formats.in.InCellReader
 
fileGroupOption(String) - Method in class loci.formats.in.L2DReader
 
fileGroupOption(String) - Method in class loci.formats.in.LeicaReader
 
fileGroupOption(String) - Method in class loci.formats.in.MetamorphReader
 
fileGroupOption(String) - Method in class loci.formats.in.MIASReader
 
fileGroupOption(String) - Method in class loci.formats.in.MicromanagerReader
 
fileGroupOption(String) - Method in class loci.formats.in.NDPIReader
 
fileGroupOption(String) - Method in class loci.formats.in.NDPISReader
 
fileGroupOption(String) - Method in class loci.formats.in.NiftiReader
 
fileGroupOption(String) - Method in class loci.formats.in.NRRDReader
 
fileGroupOption(String) - Method in class loci.formats.in.OMETiffReader
 
fileGroupOption(String) - Method in class loci.formats.in.OperettaReader
 
fileGroupOption(String) - Method in class loci.formats.in.PerkinElmerReader
 
fileGroupOption(String) - Method in class loci.formats.in.PrairieReader
 
fileGroupOption(String) - Method in class loci.formats.in.ScanrReader
 
fileGroupOption(String) - Method in class loci.formats.in.ScreenReader
 
fileGroupOption(String) - Method in class loci.formats.in.SVSReader
 
fileGroupOption(String) - Method in class loci.formats.in.TCSReader
 
fileGroupOption(String) - Method in class loci.formats.in.TillVisionReader
 
fileGroupOption(String) - Method in class loci.formats.in.TrestleReader
 
fileGroupOption(String) - Method in class loci.formats.in.VisitechReader
 
fileGroupOption(String) - Method in class loci.formats.in.ZeissLSMReader
 
fileGroupOption(String) - Method in class loci.formats.in.ZeissTIFFReader
 
fileGroupOption(String) - Method in class loci.formats.ReaderWrapper
 
fileGroupOption(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
FileHandle - Class in loci.common
A legacy delegator class for ome.scifio.io.FileHandle.
FileHandle(File, String) - Constructor for class loci.common.FileHandle
Creates a random access file stream to read from, and optionally to write to, the file specified by the File argument.
FileHandle(String, String) - Constructor for class loci.common.FileHandle
Creates a random access file stream to read from, and optionally to write to, a file with the specified name.
FileHandle - Class in ome.scifio.io
A wrapper for RandomAccessFile that implements the IRandomAccess interface.
FileHandle(File, String) - Constructor for class ome.scifio.io.FileHandle
Creates a random access file stream to read from, and optionally to write to, the file specified by the File argument.
FileHandle(String, String) - Constructor for class ome.scifio.io.FileHandle
Creates a random access file stream to read from, and optionally to write to, a file with the specified name.
FileHandleTest - Class in loci.tests.testng
Checks that no file handles are open after closing a reader.
FileHandleTest() - Constructor for class loci.tests.testng.FileHandleTest
 
FileInfo - Class in loci.formats
Encompasses basic metadata about a file.
FileInfo() - Constructor for class loci.formats.FileInfo
 
filename - Variable in class loci.formats.FileInfo
Absolute path to this file.
filename - Variable in class loci.formats.gui.ImageViewer
 
filename - Variable in class loci.formats.tiff.TiffSaver
Output filename.
filename - Variable in class mdbtools.libmdb.MdbFile
 
filename - Variable in class ome.scifio.io.NIOInputStream
The file name.
FILENAME_FORMAT - Static variable in class loci.common.DateTools
Human readable timestamp filename string
FILENAME_FORMAT - Static variable in class ome.scifio.common.DateTools
Human readable timestamp filename string
FilePassRecord - Class in loci.poi.hssf.record
Title: File Pass Record
FilePassRecord() - Constructor for class loci.poi.hssf.record.FilePassRecord
 
FilePassRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FilePassRecord
Constructs a FILEPASS record and sets its fields appropriately.
FilePattern - Class in loci.formats
FilePattern is a collection of methods for handling file patterns, a way of succinctly representing a collection of files meant to be part of the same data series.
FilePattern(Location) - Constructor for class loci.formats.FilePattern
Creates a pattern object using the given file as a template.
FilePattern(String, String) - Constructor for class loci.formats.FilePattern
Creates a pattern object using the given filename and directory path as a template.
FilePattern(String) - Constructor for class loci.formats.FilePattern
Creates a pattern object for files with the given pattern string.
FilePatternBlock - Class in loci.formats
FilePatternBlock represents a single block in a FilePattern.
FilePatternBlock(String) - Constructor for class loci.formats.FilePatternBlock
 
FilePatternDialog - Class in loci.plugins.in
Bio-Formats Importer file pattern dialog box.
FilePatternDialog(ImportProcess) - Constructor for class loci.plugins.in.FilePatternDialog
Creates a file pattern dialog for the Bio-Formats Importer.
fileReader - Variable in class loci.formats.gui.ImageViewer
Reader for files on disk.
files - Variable in class loci.formats.in.LeicaReader
Array of image file names.
files - Variable in class loci.formats.in.PerkinElmerReader
List of files to open.
files - Variable in class loci.formats.in.ZeissZVIReader
 
fileSave - Variable in class loci.formats.gui.ImageViewer
 
FileSharingRecord - Class in loci.poi.hssf.record
Title: FileSharing
FileSharingRecord() - Constructor for class loci.poi.hssf.record.FileSharingRecord
 
FileSharingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FileSharingRecord
Constructs a FileSharing record and sets its fields appropriately.
FileStitcher - Class in loci.formats
Logic to stitch together files with similar names.
FileStitcher() - Constructor for class loci.formats.FileStitcher
Constructs a FileStitcher around a new image reader.
FileStitcher(boolean) - Constructor for class loci.formats.FileStitcher
Constructs a FileStitcher around a new image reader.
FileStitcher(IFormatReader) - Constructor for class loci.formats.FileStitcher
Constructs a FileStitcher with the given reader.
FileStitcher(IFormatReader, boolean) - Constructor for class loci.formats.FileStitcher
Constructs a FileStitcher with the given reader.
filesystem - Variable in class loci.poi.POIDocument
The open POIFS FileSystem that contains our document
filetimeToDate(int, int) - Static method in class loci.poi.hpsf.Util
Converts a Windows FILETIME into a Date.
filetimeToDate(long) - Static method in class loci.poi.hpsf.Util
Converts a Windows FILETIME into a Date.
FileTypeBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is defined to represent a File Type Box of JPEG JP2 file format.
FileTypeBox(int, int, int[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
Constructs a FileTypeBox from the provided brand, minor version and compatibility list.
FileTypeBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
Constructs a FileTypeBox from the provided byte array.
FileTypeBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
Constructs a FileTypeBox from org.w3c.dom.Node.
fileView - Variable in class loci.formats.gui.ImageViewer
 
fileWriter - Variable in class loci.formats.gui.ImageViewer
Writer for files on disk.
fill() - Method in class loci.plugins.util.RecordedImageProcessor
 
fill(ImageProcessor) - Method in class loci.plugins.util.RecordedImageProcessor
 
FILL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
fill(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fill(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
fill(List, int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock
fill out a List of SmallDocumentBlocks so that it fully occupies a set of big blocks
fill3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
FILL__ANGLE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__BACKOPACITY - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__CRMOD - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__DZTYPE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLBACKCOLOR - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLCOLOR - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLED - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLOPACITY - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLTYPE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FOCUS - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__HEIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__HITTESTFILL - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__NOFILLHITTEST - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__ORIGINX - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__ORIGINY - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__PATTERNTEXTURE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__RECTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__RECTLEFT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__RECTRIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__RECTTOP - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHADECOLORS - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHADEPRESET - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHADETYPE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHAPE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHAPEORIGINX - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHAPEORIGINY - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__TOBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__TOLEFT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__TORIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__TOTOP - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__USERECT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__WIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
FILL_ORDER - Static variable in class loci.formats.tiff.IFD
 
FILL_ORDER_LEFT_TO_RIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "FillOrder" tag.
FILL_ORDER_RIGHT_TO_LEFT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "FillOrder" tag.
fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
fillBasedOnBands(int, boolean, short[], short[], short[]) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
Fills the channel definitions into the arrays based on the number of components and isPremultiplied.
fillBits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
EOL padding flag: 1 if fill bits have been added before an EOL such that the EOL ends on a byte boundary, 0 otherwise.
filled - Variable in class loci.formats.ChannelFiller
Whether to fill in the indices.
fillField(RecordInputStream) - Method in interface loci.poi.hssf.record.CustomField
Populates this fields data from the byte array passed in.
fillField(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataFormulaField
 
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBitmapBlip
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipWMFRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBSERecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherChildAnchorRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientAnchorRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientDataRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherContainerRecord
 
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDggRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDgRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherMetafileBlip
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherOptRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherPictBlip
This method deserializes the record from a byte array.
fillFields(byte[], EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord
Delegates to fillFields(byte[], int, EscherRecordFactory)
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord
The contract of this method is to deserialize an escher record including it's children.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpgrRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherTextboxRecord
This method deserializes the record from a byte array.
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.UnknownEscherRecord
This method deserializes the record from a byte array.
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
You never fill an aggregate
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
You never fill an aggregate
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
You never fill an aggregate
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisLineFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisOptionsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisParentRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisUsedRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BackupRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BarRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BeginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BlankRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BOFRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BookBoolRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoolErrRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BottomMarginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoundSheetRecord
UTF8: sid + len + bof + flags + len(str) + unicode + str 2 + 2 + 4 + 2 + 1 + 1 + len(str) UNICODE: sid + len + bof + flags + len(str) + unicode + str 2 + 2 + 4 + 2 + 1 + 1 + 2 * len(str)
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcCountRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcModeRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CodepageRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ColumnInfoRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ContinueRecord
Fill the fields.
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CountryRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DataFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DateWindow1904Record
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DBCellRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultColWidthRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DeltaRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DimensionsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DrawingRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DSFRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EOFRecord
 
fillFields(byte[], short, int) - Method in class loci.poi.hssf.record.EscherAggregate
Unused since this is an aggregate record.
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtendedFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetRecord
called by the constructor, should set class level fields.
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FilePassRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FileSharingRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FnGroupCountRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontBasisRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontIndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FooterRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormulaRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FrameRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GridsetRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GroupMarkerSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GutsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HCenterRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HeaderRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HideObjRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceEndRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceHdrRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IterationRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LeftMarginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LegendRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LineFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MergeCellsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MMSRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulBlankRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulRKRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NameRecord
called by the constructor, should set class level fields.
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteRecord
Read the record data from the supplied RecordInputStream
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteStructureSubRecord
Read the record data from the supplied RecordInputStream
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectLinkRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PageBreakRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaletteRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaneRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRev4Record
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotAreaRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotGrowthRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrecisionRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintGridlinesRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintHeadersRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintSetupRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectionRev4Record
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RecalcIdRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.Record
called by the constructor, should set class level fields.
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefModeRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefreshAllRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RightMarginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RKRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RowRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SaveRecalcRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ScenarioProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SCLRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SelectionRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesIndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesLabelsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesListRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesTextRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SharedFormulaRecord
Shared formulas are to treated like unknown records, and as a result d
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SheetPropertiesRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SSTRecord
Fill the fields from the data
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StringRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StyleRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SupBookRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TabIdRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TickRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TopMarginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnicodeString
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnitsRecord
 
fillFields(byte[], short) - Method in class loci.poi.hssf.record.UnknownRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnknownRecord
called by the constructor, should set class level fields.
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UseSelFSRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ValueRangeRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.VCenterRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowOneRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowTwoRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteAccessRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WSBoolRecord
 
fillInIFD(IFD) - Method in class loci.formats.tiff.TiffParser
Fill in IFD entries that are stored at an arbitrary offset.
fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.BaseZeissReader
Read and store basic dimensions in model
fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader
 
fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader
 
fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.BaseZeissReader
Read and store basic dimensions in model
fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader
 
fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.BaseZeissReader
Read and store basic dimensions in model
fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader
 
fillMetadataPass4(MetadataStore) - Method in class loci.formats.in.BaseZeissReader
Read and store basic dimensions in model
fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.BaseZeissReader
Read and store basic dimensions in model
fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader
 
fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader
 
fillMetadataPass6(MetadataStore) - Method in class loci.formats.in.BaseZeissReader
Read and store basic dimensions in model
fillMetadataPass7(MetadataStore) - Method in class loci.formats.in.BaseZeissReader
Store basic dimensions in model
fillOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
The logical order of bits within a byte.
fillOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
fillPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor
 
fillPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
Fills a (closed) polygon, as defined by a pair of arrays, which hold the x and y coordinates.
fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
Fills a (closed) polygon, as defined by a pair of arrays, which hold the x and y coordinates.
fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
FillRule - Enum in ome.xml.model.enums
 
FillRuleEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for FillRule.
FillRuleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FillRuleEnumHandler
 
filter(int) - Method in class loci.plugins.util.RecordedImageProcessor
 
Filter - Class in ome.xml.model
 
Filter() - Constructor for class ome.xml.model.Filter
Default constructor.
Filter(Element, OMEModel) - Constructor for class ome.xml.model.Filter
Constructs Filter recursively from an XML DOM tree.
Filter(Filter) - Constructor for class ome.xml.model.Filter
Copy constructor.
FILTER_53 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
The filter for lossless compression.
FILTER_97 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
The filter for lossy compression.
FILTER_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec
The identifier for "component default" specified filters
FILTER_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec
The identifier for "main default" specified filters
FILTER_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTFilterSpec
The identifier for "tile and component specific" specified filters
FILTER_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec
The identifier for "tile specific default" specified filters
FilterData - Class in mdbtools.dbengine.tasks
filter a given result set by a given constraint
FilterData(Task, Object, int[]) - Constructor for class mdbtools.dbengine.tasks.FilterData
 
filterMetadata - Variable in class loci.formats.FormatReader
Whether or not to filter out invalid metadata.
FilterMetadata - Class in loci.formats.meta
An implementation of MetadataStore that removes unprintable characters from metadata values before storing them in a delegate MetadataStore.
FilterMetadata(MetadataStore, boolean) - Constructor for class loci.formats.meta.FilterMetadata
 
filterPixels(String, String, String, String, String, boolean) - Static method in class loci.ome.io.OMEUtils
Filter available pixels to match given criteria.
FilterRef - Class in ome.xml.model
 
FilterRef() - Constructor for class ome.xml.model.FilterRef
Default constructor.
FilterRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterRef
Constructs FilterRef recursively from an XML DOM tree.
FilterRef(FilterRef) - Constructor for class ome.xml.model.FilterRef
Copy constructor.
FilterSet - Class in ome.xml.model
 
FilterSet() - Constructor for class ome.xml.model.FilterSet
Default constructor.
FilterSet(Element, OMEModel) - Constructor for class ome.xml.model.FilterSet
Constructs FilterSet recursively from an XML DOM tree.
FilterSet(FilterSet) - Constructor for class ome.xml.model.FilterSet
Copy constructor.
FilterSetRef - Class in ome.xml.model
 
FilterSetRef() - Constructor for class ome.xml.model.FilterSetRef
Default constructor.
FilterSetRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterSetRef
Constructs FilterSetRef recursively from an XML DOM tree.
FilterSetRef(FilterSetRef) - Constructor for class ome.xml.model.FilterSetRef
Copy constructor.
FilterType - Enum in ome.xml.model.enums
 
FilterTypeEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for FilterType.
FilterTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilterTypeEnumHandler
 
FilterTypes - Interface in jj2000.j2k.wavelet
This interface defines the identifiers for the different types of filters that are supported.
finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
 
finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
 
finalize() - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
Prints the timing information, if collected, and calls 'finalize' on the super class.
finalize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
Prints the timing information, if collected, and calls 'finalize' on the super class.
finalize() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
Prints the timing information, if collected, and calls 'finalize' on the super class.
finalize() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
findCellComment(Sheet, int, int) - Static method in class loci.poi.hssf.usermodel.HSSFCell
Cell comment finder.
FindCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
 
findColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette
Finds the first occurance of a given color
findColorIndex(PaletteBuilder.ColorNode, Color) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
findColumnIdx(int, int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
findEdges() - Method in class loci.plugins.util.RecordedImageProcessor
 
findEndOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
findEndOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Sheet
Returns the first occurance of a record matching a particular sid.
findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Workbook
Returns the first occurance of a record matching a particular sid.
findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Sheet
Finds the first occurance of a record matching a particular sid and returns it's position.
findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Workbook
Returns the index of a record matching a particular sid.
findFont(short, short, short, String, boolean, boolean, short, byte) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Finds a font that matches the one with the supplied attributes
findNextRecordBySid(short, int) - Method in class loci.poi.hssf.model.Workbook
Returns the next occurance of a record matching a particular sid.
findPaletteEntry(PaletteBuilder.ColorNode, int, byte[], byte[], byte[]) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
findPattern(String) - Static method in class loci.formats.FilePattern
Identifies the group pattern from a given file within that group.
findPattern(Location) - Static method in class loci.formats.FilePattern
Identifies the group pattern from a given file within that group.
findPattern(File) - Static method in class loci.formats.FilePattern
Identifies the group pattern from a given file within that group.
findPattern(String, String) - Static method in class loci.formats.FilePattern
Identifies the group pattern from a given file within that group.
findPattern(String, String, String[]) - Static method in class loci.formats.FilePattern
Identifies the group pattern from a given file within that group.
findPattern(String, String, String[], int[]) - Static method in class loci.formats.FilePattern
Identifies the group pattern from a given file within that group.
findPattern(String[]) - Static method in class loci.formats.FilePattern
Generate a pattern from a list of file names.
findPattern(String) - Method in class loci.formats.FileStitcher
 
findPatterns(String) - Method in class loci.formats.FileStitcher
Finds the file pattern for the given ID, based on the state of the file stitcher.
findSeriesPatterns(String) - Static method in class loci.formats.FilePattern
 
findSeriesPatterns(String, String, String[]) - Static method in class loci.formats.FilePattern
 
findSheetNameFromExternSheet(short) - Method in class loci.poi.hssf.model.Workbook
finds the sheet name by his extern sheet index
findSimilarColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette
Finds the closest matching color in the custom palette.
findStartOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
findStartOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
findString(String...) - Method in class loci.common.NIOInputStream
Reads a string ending with one of the given terminating substrings.
findString(boolean, String...) - Method in class loci.common.NIOInputStream
Reads or skips a string ending with one of the given terminating substrings.
findString(int, String...) - Method in class loci.common.NIOInputStream
Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(boolean, int, String...) - Method in class loci.common.NIOInputStream
Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(String...) - Method in class loci.common.RandomAccessInputStream
Reads a string ending with one of the given terminating substrings.
findString(boolean, String...) - Method in class loci.common.RandomAccessInputStream
Reads or skips a string ending with one of the given terminating substrings.
findString(int, String...) - Method in class loci.common.RandomAccessInputStream
Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(boolean, int, String...) - Method in class loci.common.RandomAccessInputStream
Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(String...) - Method in class ome.scifio.io.NIOInputStream
Reads a string ending with one of the given terminating substrings.
findString(boolean, String...) - Method in class ome.scifio.io.NIOInputStream
Reads or skips a string ending with one of the given terminating substrings.
findString(int, String...) - Method in class ome.scifio.io.NIOInputStream
Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(boolean, int, String...) - Method in class ome.scifio.io.NIOInputStream
Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(String...) - Method in class ome.scifio.io.RandomAccessInputStream
Reads a string ending with one of the given terminating substrings.
findString(boolean, String...) - Method in class ome.scifio.io.RandomAccessInputStream
Reads or skips a string ending with one of the given terminating substrings.
findString(int, String...) - Method in class ome.scifio.io.RandomAccessInputStream
Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(boolean, int, String...) - Method in class ome.scifio.io.RandomAccessInputStream
Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.
FINE_DOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
FINE_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Small fine dots
finish(ImportProcess) - Method in class loci.plugins.in.Importer
 
finishLengthCalculation(int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
Terminates the calculation of the required length for each coding pass.
finishPixels(int) - Method in class loci.formats.ome.OmeisImporter
Deprecated.
Instructs OMEIS to process the Pixels file corresponding to the given pixels ID.
FIRST_BYPASS_PASS_IDX - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions
The index of the first "raw" pass, if bypass mode is on.
FIRST_COLOR_INDEX - Static variable in class loci.poi.hssf.record.PaletteRecord
The byte index of the first color
first_data_pg - Variable in class mdbtools.libmdb.MdbTableDef
 
firstDataStream - Variable in class loci.formats.tools.AmiraParameters
 
FitsReader - Class in loci.formats.in
FitsReader is the file format reader for Flexible Image Transport System (FITS) images.
FitsReader() - Constructor for class loci.formats.in.FitsReader
Constructs a new FitsReader.
FixedField - Interface in loci.poi.util
behavior of a field at a fixed location within a byte array
FLAG_BACKGROUND - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_CHILD - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_CONNECTOR - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_DELETED - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_FLIPHORIZ - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_FLIPVERT - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_GROUP - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_HASSHAPETYPE - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_HAVEANCHOR - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_HAVEMASTER - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_OLESHAPE - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_PATRIARCH - Static variable in class loci.poi.ddf.EscherSpRecord
 
flags - Variable in class loci.formats.in.SDTInfo
Scan clocks bits 2-0 (frame, line, pixel), rates_read - bit 15.
FLASH - Static variable in class loci.formats.tiff.IFD
 
FLASH_DID_NOT_FIRE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "Flash" tag, indicating that the flash did not fire.
FLASH_ENERGY - Static variable in class loci.formats.tiff.IFD
 
FLASH_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "Flash" tag, indicating that the flash fired, but the strobe return status is unknown.
FLASH_MASK_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A mask to be used with the "Flash" tag, indicating that the flash fired.
FLASH_MASK_FUNCTION_NOT_PRESENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A mask to be used with the "Flash" tag, indicating no flash function present.
FLASH_MASK_MODE_AUTO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A mask to be used with the "Flash" tag, indicating auto mode.
FLASH_MASK_MODE_FLASH_FIRING - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A mask to be used with the "Flash" tag, indicating compulsory flash firing mode.
FLASH_MASK_MODE_FLASH_SUPPRESSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A mask to be used with the "Flash" tag, indicating compulsory flash suppression mode.
FLASH_MASK_RED_EYE_REDUCTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A mask to be used with the "Flash" tag, indicating red-eye reduction supported.
FLASH_MASK_RETURN_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A mask to be used with the "Flash" tag, indicating strobe return light detected.
FLASH_MASK_RETURN_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A mask to be used with the "Flash" tag, indicating strobe return light not detected.
FLASH_PIX_VERSION - Static variable in class loci.formats.tiff.IFD
 
FLASH_STROBE_RETURN_LIGHT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "Flash" tag, indicating that the flash fired, and the strobe return light was detected.
FLASH_STROBE_RETURN_LIGHT_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "Flash" tag, indicating that the flash fired, but the strobe return light was not detected.
flattenedResolutions - Variable in class loci.formats.FormatReader
Whether or not resolutions are flattened.
flattenHashtables() - Method in class loci.formats.FormatReader
 
flattenIntoHashMap() - Method in class loci.common.IniList
Flattens all of the INI tables into a single HashMap whose keys are of the format "[table name] table key".
flattenIntoHashMap() - Method in class ome.scifio.common.IniList
Flattens all of the INI tables into a single HashMap whose keys are of the format "[table name] table key".
flbckX - Variable in class loci.formats.in.SDTInfo
 
flbckY - Variable in class loci.formats.in.SDTInfo
 
FLEX - Static variable in class loci.formats.in.FlexReader
Custom IFD entry for Flex XML.
FLEX_SUFFIX - Static variable in class loci.formats.in.FlexReader
 
FlexReader - Class in loci.formats.in
FlexReader is a file format reader for Evotec Flex files.
FlexReader() - Constructor for class loci.formats.in.FlexReader
Constructs a new Flex reader.
FlexReader.FlexHandler - Class in loci.formats.in
SAX handler for parsing XML.
FlexReader.FlexHandler(Vector<String>, Vector<String>, MetadataStore, boolean, int) - Constructor for class loci.formats.in.FlexReader.FlexHandler
 
FlexReader.MeaHandler - Class in loci.formats.in
SAX handler for parsing XML from .mea files.
FlexReader.MeaHandler() - Constructor for class loci.formats.in.FlexReader.MeaHandler
 
FlexReader.ResHandler - Class in loci.formats.in
SAX handler for parsing XML from .res files.
FlexReader.ResHandler() - Constructor for class loci.formats.in.FlexReader.ResHandler
 
FlexWidgets - Class in loci.plugins.config
Custom widgets for configuring Bio-Formats Flex support.
FlexWidgets() - Constructor for class loci.plugins.config.FlexWidgets
 
FLIM_DOMAIN - Static variable in class loci.formats.FormatTools
Identifies the fluorescence-lifetime domain.
flipHorizontal() - Method in class loci.plugins.util.RecordedImageProcessor
 
flipVertical() - Method in class loci.plugins.util.RecordedImageProcessor
 
FLOAT - Static variable in class loci.formats.FormatTools
Identifies the FLOAT data type used to store pixel values.
floatsToBytes(float[], boolean) - Static method in class loci.common.DataTools
Translates an array of float values into an array of byte values.
floatsToBytes(float[], boolean) - Static method in class ome.scifio.common.DataTools
Translates an array of float values into an array of byte values.
floatToBytes(float, boolean) - Static method in class loci.common.DataTools
Translates the float value into an array of four bytes.
floatToBytes(float, boolean) - Static method in class ome.scifio.common.DataTools
Translates the float value into an array of four bytes.
floatValue() - Method in class loci.formats.tiff.TiffRational
Returns the value of the specified number as a float.
FLOW_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo
For .sdt files created automatically in Continuous Flow mode measurement (no setup, only data).
FluoviewReader - Class in loci.formats.in
FluoviewReader is the file format reader for Olympus Fluoview TIFF files AND Andor Bio-imaging Division (ABD) TIFF files.
FluoviewReader() - Constructor for class loci.formats.in.FluoviewReader
Constructs a new Fluoview TIFF reader.
flush() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
flush() - Method in class com.sun.media.imageioimpl.common.BitFile
 
flush() - Method in class com.sun.media.imageioimpl.common.LZWCompressor
Indicate to compressor that no more data to go so write out any remaining buffered data.
flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
A null operation as writing is not supported.
flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
flush() - Method in interface jj2000.j2k.io.BinaryDataOutput
Any data that has been buffered must be written, and the stream should be realigned at the byte level.
flush() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
Any data that has been buffered must be written (including buffering at the bit level), and the stream should be realigned at the byte level.
flush() - Method in class jj2000.j2k.util.ISRandomAccessIO
Does nothing since this class does not implement data output.
flush() - Method in interface jj2000.j2k.util.MsgLogger
Writes any buffered data from the println() method to the device.
flush() - Method in class jj2000.j2k.util.StreamMsgLogger
Writes any buffered data from the print() and println() methods to the device.
flush() - Method in class loci.common.RandomAccessOutputStream
 
flush() - Method in class loci.plugins.config.TextAreaWriter
Flushing a TextAreaWriter does nothing .
flush() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream
Flushes this output stream and forces any buffered output bytes to be written out.
flush() - Method in class ome.scifio.io.RandomAccessOutputStream
 
flushBefore(long) - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
fmt - Variable in class mdbtools.libmdb.MdbHandle
 
FnGroupCountRecord - Class in loci.poi.hssf.record
Title: Function Group Count Record
FnGroupCountRecord() - Constructor for class loci.poi.hssf.record.FnGroupCountRecord
 
FnGroupCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FnGroupCountRecord
Constructs a FnGroupCount record and sets its fields appropriately.
FOCAL_LENGTH - Static variable in class loci.formats.tiff.IFD
 
FOCAL_LENGTH_35MM_FILM - Static variable in class loci.formats.tiff.IFD
 
FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class loci.formats.tiff.IFD
 
FOCAL_PLANE_RESOLUTION_UNIT_CENTIMETER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "FocalPlaneXResolution" tag.
FOCAL_PLANE_RESOLUTION_UNIT_INCH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "FocalPlaneXResolution" tag.
FOCAL_PLANE_RESOLUTION_UNIT_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "FocalPlaneResolutionUnit" tag.
FOCAL_PLANE_X_RESOLUTION - Static variable in class loci.formats.tiff.IFD
 
FOCAL_PLANE_Y_RESOLUTION - Static variable in class loci.formats.tiff.IFD
 
focusGained(FocusEvent) - Method in class loci.plugins.in.MainDialog
Handles information pane updates when component focus changes.
focusLost(FocusEvent) - Method in class loci.plugins.in.MainDialog
 
font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFFooter
Returns the string that represents the change in font.
font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFHeader
Returns the string that represents the change in font.
FONT_ARIAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont
Arial font
FontBasisRecord - Class in loci.poi.hssf.record
The font basis record stores various font metrics.
FontBasisRecord() - Constructor for class loci.poi.hssf.record.FontBasisRecord
 
FontBasisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontBasisRecord
Constructs a FontBasis record and sets its fields appropriately.
FontDetails - Class in loci.poi.hssf.usermodel
Stores width and height details about a font.
FontDetails(String, int) - Constructor for class loci.poi.hssf.usermodel.FontDetails
Construct the font details with the given name and height.
FontFamily - Enum in ome.xml.model.enums
 
FontFamilyEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for FontFamily.
FontFamilyEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontFamilyEnumHandler
 
FontIndexRecord - Class in loci.poi.hssf.record
The font index record indexes into the font table for the text record.
FontIndexRecord() - Constructor for class loci.poi.hssf.record.FontIndexRecord
 
FontIndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontIndexRecord
Constructs a FontIndex record and sets its fields appropriately.
FontRecord - Class in loci.poi.hssf.record
Title: Font Record - descrbes a font in the workbook (index = 0-3,5-infinity - skip 4)
FontRecord() - Constructor for class loci.poi.hssf.record.FontRecord
 
FontRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontRecord
Constructs a Font record and sets its fields appropriately.
fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFFooter
Returns the string that represents the change in font size.
fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFHeader
Returns the string that represents the change in font size.
FontStyle - Enum in ome.xml.model.enums
 
FontStyleEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for FontStyle.
FontStyleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontStyleEnumHandler
 
footer - Variable in class loci.poi.hssf.model.Sheet
 
FooterRecord - Class in loci.poi.hssf.record
Title: Footer Record
FooterRecord() - Constructor for class loci.poi.hssf.record.FooterRecord
 
FooterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FooterRecord
Constructs a FooterRecord record and sets its fields appropriately.
force - Variable in class ome.scifio.common.ReflectedUniverse
Whether to force our way past restrictive access modifiers.
forEachTile(TestTools.TileLoopIteration, int, int, int, int, int, int, int) - Static method in class loci.tests.testng.TestTools
Iterates over every tile in a given pixel buffer based on the over arching dimensions and a requested maximum tile width and height.
format - Variable in class loci.formats.FormatHandler
Name of this file format.
format - Variable in class loci.poi.hpsf.PropertySet
Specifies this PropertySet's format.
format(String, Object[]) - Static method in class loci.poi.util.StringUtil
Apply printf() like formatting to a string.
FORMAT_MASK - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData
 
formatDate(String, String) - Static method in class loci.common.DateTools
Formats the given date as an ISO 8601 date.
formatDate(String, String, boolean) - Static method in class loci.common.DateTools
Formats the given date as an ISO 8601 date.
formatDate(String, String[]) - Static method in class loci.common.DateTools
Formats the given date as an ISO 8601 date.
formatDate(String, String[], boolean) - Static method in class loci.common.DateTools
Formats the given date as an ISO 8601 date.
formatDate(String, String) - Static method in class ome.scifio.common.DateTools
Formats the given date as an ISO 8601 date.
formatDate(String, String, boolean) - Static method in class ome.scifio.common.DateTools
Formats the given date as an ISO 8601 date.
formatDate(String, String[]) - Static method in class ome.scifio.common.DateTools
Formats the given date as an ISO 8601 date.
formatDate(String, String[], boolean) - Static method in class ome.scifio.common.DateTools
Formats the given date as an ISO 8601 date.
FormatEntry - Class in loci.plugins.config
A list entry for the configuration window's Formats tab.
FormatEntry(PrintWriter, Object) - Constructor for class loci.plugins.config.FormatEntry
 
FormatException - Exception in loci.formats
FormatException is the exception thrown when something goes wrong performing a file format operation.
FormatException() - Constructor for exception loci.formats.FormatException
 
FormatException(String) - Constructor for exception loci.formats.FormatException
 
FormatException(String, Throwable) - Constructor for exception loci.formats.FormatException
 
FormatException(Throwable) - Constructor for exception loci.formats.FormatException
 
FormatFileFilter - Class in loci.formats.gui
A file filter for a biological file format, for use with a JFileChooser.
FormatFileFilter(IFormatReader) - Constructor for class loci.formats.gui.FormatFileFilter
Constructs a new filter that accepts files of the given reader's type.
FormatFileFilter(IFormatReader, boolean) - Constructor for class loci.formats.gui.FormatFileFilter
Constructs a new filter that accepts files of the given reader's type, allowing the reader to open files only if the allowOpen flag is set.
FormatHandler - Class in loci.formats
Abstract superclass of all biological file format readers and writers.
FormatHandler(String, String) - Constructor for class loci.formats.FormatHandler
Constructs a format handler with the given name and default suffix.
FormatHandler(String, String[]) - Constructor for class loci.formats.FormatHandler
Constructs a format handler with the given name and default suffixes.
formatID - Variable in class loci.poi.hpsf.Section
The section's format ID, Section.getFormatID().
formatIterator() - Method in class loci.poi.hssf.record.UnicodeString
 
formatLabel - Variable in class loci.formats.gui.PreviewPane
Labels containing thumbnail and dimensional information.
FormatReader - Class in loci.formats
Abstract superclass of all biological file format readers.
FormatReader(String, String) - Constructor for class loci.formats.FormatReader
Constructs a format reader with the given name and default suffix.
FormatReader(String, String[]) - Constructor for class loci.formats.FormatReader
Constructs a format reader with the given name and default suffixes.
FormatReaderTest - Class in loci.tests.testng
TestNG tester for Bio-Formats file format readers.
FormatReaderTest(String, float, boolean) - Constructor for class loci.tests.testng.FormatReaderTest
 
FormatReaderTestFactory - Class in loci.tests.testng
Factory for scanning a directory structure and generating instances of FormatReaderTest based on the image files found.
FormatReaderTestFactory() - Constructor for class loci.tests.testng.FormatReaderTestFactory
 
FormatRecord - Class in loci.poi.hssf.record
Title: Format Record
FormatRecord() - Constructor for class loci.poi.hssf.record.FormatRecord
 
FormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormatRecord
Constructs a Format record and sets its fields appropriately.
FORMATS - Static variable in class loci.formats.in.GelReader
 
formats - Variable in class loci.poi.hssf.model.Workbook
 
formatText - Variable in class loci.formats.gui.PreviewPane
 
formatTip - Variable in class loci.formats.gui.PreviewPane
 
FormatTools - Class in loci.formats
A utility class for format reader and writer implementations.
FormatWriter - Class in loci.formats
Abstract superclass of all biological file format writers.
FormatWriter(String, String) - Constructor for class loci.formats.FormatWriter
Constructs a format writer with the given name and default suffix.
FormatWriter(String, String[]) - Constructor for class loci.formats.FormatWriter
Constructs a format writer with the given name and default suffixes.
FormatWriterTest - Class in loci.tests.testng
TestNG tester for Bio-Formats file format writers.
FormatWriterTest(String) - Constructor for class loci.tests.testng.FormatWriterTest
 
FormatWriterTestFactory - Class in loci.tests.testng
Factory for scanning a directory structure and generating instances of FormatWriterTest based on the image files found.
FormatWriterTestFactory() - Constructor for class loci.tests.testng.FormatWriterTestFactory
 
FORMULA_TYPE_ARRAY - Static variable in class loci.poi.hssf.model.FormulaParser
 
FORMULA_TYPE_CELL - Static variable in class loci.poi.hssf.model.FormulaParser
 
FORMULA_TYPE_CONDFOMRAT - Static variable in class loci.poi.hssf.model.FormulaParser
 
FORMULA_TYPE_NAMEDRANGE - Static variable in class loci.poi.hssf.model.FormulaParser
 
FORMULA_TYPE_SHARED - Static variable in class loci.poi.hssf.model.FormulaParser
 
FormulaParser - Class in loci.poi.hssf.model
This class parses a formula string into a List of tokens in RPN order.
FormulaParser(String, Workbook) - Constructor for class loci.poi.hssf.model.FormulaParser
Create the formula parser, with the string that is to be parsed against the supplied workbook.
FormulaRecord - Class in loci.poi.hssf.record
Formula Record.
FormulaRecord() - Constructor for class loci.poi.hssf.record.FormulaRecord
Creates new FormulaRecord
FormulaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormulaRecord
Constructs a Formula record and sets its fields appropriately.
FormulaRecordAggregate - Class in loci.poi.hssf.record.aggregates
The formula record aggregate is used to join together the formula record and it's (optional) string record and (optional) Shared Formula Record (template reads, excel optimization).
FormulaRecordAggregate(FormulaRecord, StringRecord) - Constructor for class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
FormulaViewer - Class in loci.poi.hssf.dev
FormulaViewer - finds formulas in a BIFF8 file and attempts to read them/display data from them.
FormulaViewer() - Constructor for class loci.poi.hssf.dev.FormulaViewer
Creates new FormulaViewer
FORW_ICT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Identifier for the Forward Irreversible Component Transformation (FORW_ICT).
FORW_RCT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Identifier for the Forward Reversible Component Transformation (FORW_RCT).
FORWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
 
ForwardWT - Class in jj2000.j2k.wavelet.analysis
This abstract class represents the forward wavelet transform functional block.
ForwardWT(ImgData) - Constructor for class jj2000.j2k.wavelet.analysis.ForwardWT
Initializes this object for the specified number of tiles 'nt' and components 'nc'.
ForwCompTransf - Class in jj2000.j2k.image.forwcomptransf
This class apply component transformations to the tiles depending on user specifications.
ForwCompTransf(BlkImgDataSrc, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Constructs a new ForwCompTransf object that operates on the specified source of image data.
ForwCompTransfSpec - Class in jj2000.j2k.image.forwcomptransf
This class extends CompTransfSpec class in order to hold encoder specific aspects of CompTransfSpec.
ForwCompTransfSpec(int, int, byte, AnWTFilterSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec
Constructs a new 'ForwCompTransfSpec' for the specified number of components and tiles and the arguments of optName option.
ForwWT - Interface in jj2000.j2k.wavelet.analysis
This interface extends the WaveletTransform with the specifics of forward wavelet transforms.
ForwWTDataProps - Interface in jj2000.j2k.wavelet.analysis
This interface extends the ImgData interface with methods that are necessary for forward wavelet data (i.e.
ForwWTFull - Class in jj2000.j2k.wavelet.analysis
This class implements the ForwardWT with the full-page approach to be used either with integer or floating-point filters
ForwWTFull(BlkImgDataSrc, J2KImageWriteParamJava, int, int) - Constructor for class jj2000.j2k.wavelet.analysis.ForwWTFull
Initializes this object with the given source of image data and with all the decompositon parameters
fp - Variable in class loci.formats.AxisGuesser
File pattern identifying dimensional axis blocks.
fp - Variable in class ome.scifio.io.StreamHandle
Current position within the stream.
fps - Variable in class loci.formats.FormatWriter
Frame rate to use when writing in frames per second, if applicable.
fps - Variable in class loci.formats.gui.ImageViewer
 
fpsSpin - Variable in class loci.plugins.util.DataBrowser
 
FQColumn - Class in mdbtools.dbengine.sql
 
FQColumn(int, int) - Constructor for class mdbtools.dbengine.sql.FQColumn
 
FrameRecord - Class in loci.poi.hssf.record
The frame record indicates whether there is a border around the displayed text of a chart.
FrameRecord() - Constructor for class loci.poi.hssf.record.FrameRecord
 
FrameRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FrameRecord
Constructs a Frame record and sets its fields appropriately.
FREE_BYTE_COUNTS - Static variable in class loci.formats.tiff.IFD
 
FREE_OFFSETS - Static variable in class loci.formats.tiff.IFD
 
freeTree(PaletteBuilder.ColorNode) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
FREQUENCY - Static variable in class loci.formats.FormatTools
Identifies the Frequency dimensional type, representing a dimension consisting of frequencies.
fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace
 
fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
 
fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
 
fromCIEXYZ(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace
 
fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFColorConverter
Converts an RGB triple into the native color space of this TIFFColorConverter, and stores the result in the first three entries of the result array.
fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace
 
fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
 
fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
 
fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
 
fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
 
fromRGB(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace
 
fromString(String) - Static method in enum ome.xml.model.enums.AcquisitionMode
 
fromString(String) - Static method in enum ome.xml.model.enums.ArcType
 
fromString(String) - Static method in enum ome.xml.model.enums.Binning
 
fromString(String) - Static method in enum ome.xml.model.enums.Compression
 
fromString(String) - Static method in enum ome.xml.model.enums.ContrastMethod
 
fromString(String) - Static method in enum ome.xml.model.enums.Correction
 
fromString(String) - Static method in enum ome.xml.model.enums.DetectorType
 
fromString(String) - Static method in enum ome.xml.model.enums.DimensionOrder
 
fromString(String) - Static method in enum ome.xml.model.enums.ExperimentType
 
fromString(String) - Static method in enum ome.xml.model.enums.FilamentType
 
fromString(String) - Static method in enum ome.xml.model.enums.FillRule
 
fromString(String) - Static method in enum ome.xml.model.enums.FilterType
 
fromString(String) - Static method in enum ome.xml.model.enums.FontFamily
 
fromString(String) - Static method in enum ome.xml.model.enums.FontStyle
 
fromString(String) - Static method in enum ome.xml.model.enums.IlluminationType
 
fromString(String) - Static method in enum ome.xml.model.enums.Immersion
 
fromString(String) - Static method in enum ome.xml.model.enums.LaserMedium
 
fromString(String) - Static method in enum ome.xml.model.enums.LaserType
 
fromString(String) - Static method in enum ome.xml.model.enums.LineCap
 
fromString(String) - Static method in enum ome.xml.model.enums.Marker
 
fromString(String) - Static method in enum ome.xml.model.enums.Medium
 
fromString(String) - Static method in enum ome.xml.model.enums.MicrobeamManipulationType
 
fromString(String) - Static method in enum ome.xml.model.enums.MicroscopeType
 
fromString(String) - Static method in enum ome.xml.model.enums.NamingConvention
 
fromString(String) - Static method in enum ome.xml.model.enums.PixelType
 
fromString(String) - Static method in enum ome.xml.model.enums.Pulse
 
FT_BR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
File Type Fields
ftpIdx - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk
The index of the first truncation point returned
FujiReader - Class in loci.formats.in
FujiReader is the file format reader for Fuji LAS 3000 datasets.
FujiReader() - Constructor for class loci.formats.in.FujiReader
Constructs a new Fuji reader.
FuncPtg - Class in loci.poi.hssf.record.formula
 
FuncPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncPtg
Creates new function pointer from a byte array usually called while reading an excel file.
Function - Interface in mdbtools.dbengine.functions
All functions must implement this
functionData - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
FunctionDef - Class in mdbtools.dbengine.sql
A defination of a function, used in the parse tree
FunctionDef() - Constructor for class mdbtools.dbengine.sql.FunctionDef
 
FuncVarPtg - Class in loci.poi.hssf.record.formula
 
FuncVarPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg
Creates new function pointer from a byte array usually called while reading an excel file.
FuncVarPtg(String, byte) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg
Create a function ptg from a string tokenised by the parser
FV1000_MAGIC_STRING_1 - Static variable in class loci.formats.in.FV1000Reader
 
FV1000_MAGIC_STRING_2 - Static variable in class loci.formats.in.FV1000Reader
 
FV1000_SUFFIXES - Static variable in class loci.formats.in.FV1000Reader
 
FV1000Reader - Class in loci.formats.in
FV1000Reader is the file format reader for Fluoview FV 1000 OIB and Fluoview FV 1000 OIF files.
FV1000Reader() - Constructor for class loci.formats.in.FV1000Reader
Constructs a new FV1000 reader.

G

GAIN_CONTROL - Static variable in class loci.formats.tiff.IFD
 
GAIN_CONTROL_HIGH_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "GainControl" tag.
GAIN_CONTROL_HIGH_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "GainControl" tag.
GAIN_CONTROL_LOW_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "GainControl" tag.
GAIN_CONTROL_LOW_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "GainControl" tag.
GAIN_CONTROL_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "GainControl" tag.
GAMMA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
The value of the third lifting step coefficient
GAMMA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
The value of the third lifting step coefficient
gamma(double) - Method in class loci.plugins.util.RecordedImageProcessor
 
gammaBlue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
gammaGreen - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
gammaRed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
GatanDM2Reader - Class in loci.formats.in
GatanDM2Reader is the file format reader for Gatan .dm2 files.
GatanDM2Reader() - Constructor for class loci.formats.in.GatanDM2Reader
Constructs a new Gatan .dm2 reader.
GatanReader - Class in loci.formats.in
GatanReader is the file format reader for Gatan files.
GatanReader() - Constructor for class loci.formats.in.GatanReader
Constructs a new Gatan reader.
gb - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Number of guard bits off all component in the current tile.
gbs - Variable in class jj2000.j2k.decoder.DecoderSpecs
Number of guard bits specifications
gcd(int, int) - Static method in class jj2000.j2k.util.MathUtil
Method that calculates the Greatest Common Divisor (GCD) of two positive integer numbers.
gcd(int[]) - Static method in class jj2000.j2k.util.MathUtil
Method that calculates the Greatest Common Divisor (GCD) of several positive integer numbers.
GEL_DOMAIN - Static variable in class loci.formats.FormatTools
Identifies the gel and blot imaging domain.
GelReader - Class in loci.formats.in
GelReader is the file format reader for Molecular Dynamics GEL TIFF files.
GelReader() - Constructor for class loci.formats.in.GelReader
Constructs a new GEL reader.
GENERAL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
generateScreen(int, int, int, int, int) - Method in class loci.formats.tools.FakeImage
Creates a fake SPW file/directory structure.
genericProcessEvents(HSSFRequest, RecordInputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory
Processes a DocumentInputStream into essentially Record events.
GEOMETRY__3DOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST10VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST2VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST3VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST4VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST5VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST6VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST7VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST8VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST9VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUSTVALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__BOTTOM - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__FILLOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__FILLSHADESHAPEOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__GEOTEXTOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__LEFT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__LINEOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__RIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__SEGMENTINFO - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__SHADOWok - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__SHAPEPATH - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__TOP - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__VERTICES - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__ALIGNMENTONCURVE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__BOLDFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__CHARBOUNDINGBOX - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__DEFAULTPOINTSIZE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__FONTFAMILYNAME - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__HASTEXTEFFECT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__ITALICFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__KERNCHARACTERS - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__NOMEASUREALONGPATH - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__REVERSEROWORDER - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__ROTATECHARACTERS - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__RTFTEXT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__SCALETEXTONPATH - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__SHADOWFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__SMALLCAPSFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__STRETCHCHARHEIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__STRETCHTOFITSHAPE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__STRIKETHROUGHFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__TEXTSPACING - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__TIGHTORTRACK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__UNDERLINEFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__UNICODE - Static variable in class loci.poi.ddf.EscherProperties
 
GeoTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff
A class representing the tags found in a GeoTIFF IFD.
get(int) - Method in class loci.common.IniList
 
get(Object) - Method in class loci.common.IniTable
 
get(int) - Method in class loci.formats.codec.ByteVector
 
get(int) - Static method in enum loci.formats.codec.CompressionType
Retrieves the compression by reverse lookup of its "code".
get(int) - Static method in enum loci.formats.codec.JPEG2000BoxType
Retrieves the box type by reverse lookup of its "code".
get(int) - Static method in enum loci.formats.codec.JPEG2000SegmentMarker
Retrieves the segment marker by reverse lookup of its "code".
get(int) - Static method in enum loci.formats.tiff.IFDType
Retrieves a IFD type by reverse lookup of its "code".
get(int) - Method in class loci.formats.tiff.OnDemandLongArray
 
get(int) - Static method in enum loci.formats.tiff.PhotoInterp
Retrieves a photometric interpretation by reverse lookup of its "code".
get(int) - Static method in enum loci.formats.tiff.TiffCompression
Retrieves a TIFF compression instance by code.
get(int) - Method in class loci.plugins.util.RecordedImageProcessor
 
get(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
get(String) - Method in class loci.poi.hpsf.CustomProperties
Gets a named value from the custom properties.
get(long) - Method in class loci.poi.hpsf.wellknown.PropertyIDMap
Gets the ID string for an ID from the PropertyIDMap.
get(byte[]) - Method in class loci.poi.hpsf.wellknown.SectionIDMap
Returns the PropertyIDMap for a given section format ID.
get(Object) - Method in class loci.poi.hpsf.wellknown.SectionIDMap
Deprecated.
get(int) - Method in class loci.poi.hssf.model.WorkbookRecordList
 
get(Object) - Method in class loci.poi.util.BinaryTree
Returns the value to which this map maps the specified key.
get() - Method in class loci.poi.util.ByteField
get the ByteField's current value
get(int) - Method in class loci.poi.util.DoubleList
Returns the element at the specified position in this list.
get(int, int) - Method in class loci.poi.util.DoubleList2d
 
get() - Method in class loci.poi.util.IntegerField
get the IntegerField's current value
get(int) - Method in class loci.poi.util.IntList
Returns the element at the specified position in this list.
get(int, int) - Method in class loci.poi.util.IntList2d
 
get(int) - Method in class loci.poi.util.IntMapper
 
get(int, int) - Method in class loci.poi.util.List2d
 
get() - Method in class loci.poi.util.LongField
get the LongField's current value
get() - Method in class loci.poi.util.ShortField
get the ShortField's current value
get(int) - Method in class loci.poi.util.ShortList
Returns the element at the specified position in this list.
get(String) - Method in class loci.tests.testng.ConfigurationTree
Retrieves the Configuration object corresponding to the given file.
get(int) - Method in interface mdbtools.dbengine.Data
get the data at a certain column
get(int) - Method in class mdbtools.dbengine.MemoryData
get the data at a certain column
get123Prefix() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get some old holdover from lotus 123.
get16BitLookupTable() - Method in class loci.formats.ChannelFiller
 
get16BitLookupTable() - Method in class loci.formats.DelegateReader
 
get16BitLookupTable() - Method in class loci.formats.FileStitcher
 
get16BitLookupTable() - Method in class loci.formats.FormatReader
 
get16BitLookupTable() - Method in interface loci.formats.IFormatReader
Gets the 16-bit color lookup table associated with the most recently opened image.
get16BitLookupTable() - Method in class loci.formats.ImageReader
 
get16BitLookupTable() - Method in class loci.formats.in.BaseZeissReader
 
get16BitLookupTable() - Method in class loci.formats.in.DicomReader
 
get16BitLookupTable() - Method in class loci.formats.in.FakeReader
 
get16BitLookupTable() - Method in class loci.formats.in.FV1000Reader
 
get16BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader
 
get16BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader
 
get16BitLookupTable() - Method in class loci.formats.in.InCellReader
 
get16BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader
 
get16BitLookupTable() - Method in class loci.formats.in.JPXReader
 
get16BitLookupTable() - Method in class loci.formats.in.LeicaReader
 
get16BitLookupTable() - Method in class loci.formats.in.LIFReader
 
get16BitLookupTable() - Method in class loci.formats.in.MIASReader
 
get16BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader
 
get16BitLookupTable() - Method in class loci.formats.in.NativeND2Reader
 
get16BitLookupTable() - Method in class loci.formats.in.OMETiffReader
 
get16BitLookupTable() - Method in class loci.formats.in.PDSReader
 
get16BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader
 
get16BitLookupTable() - Method in class loci.formats.in.ScreenReader
 
get16BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader
 
get16BitLookupTable() - Method in class loci.formats.in.TCSReader
 
get16BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader
 
get16BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader
 
get16BitLookupTable() - Method in class loci.formats.in.ZipReader
 
get16BitLookupTable() - Method in class loci.formats.ReaderWrapper
 
get26Sys(String) - Method in class loci.poi.hssf.util.RangeAddress
 
get8BitLookupTable() - Method in class loci.formats.ChannelFiller
 
get8BitLookupTable() - Method in class loci.formats.DelegateReader
 
get8BitLookupTable() - Method in class loci.formats.FileStitcher
 
get8BitLookupTable() - Method in class loci.formats.FormatReader
 
get8BitLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools
Converts an IndexColorModel to a 2D byte array.
get8BitLookupTable() - Method in interface loci.formats.IFormatReader
Gets the 8-bit color lookup table associated with the most recently opened image.
get8BitLookupTable() - Method in class loci.formats.ImageReader
 
get8BitLookupTable() - Method in class loci.formats.in.AmiraReader
 
get8BitLookupTable() - Method in class loci.formats.in.APNGReader
 
get8BitLookupTable() - Method in class loci.formats.in.AVIReader
 
get8BitLookupTable() - Method in class loci.formats.in.BaseZeissReader
 
get8BitLookupTable() - Method in class loci.formats.in.BioRadReader
 
get8BitLookupTable() - Method in class loci.formats.in.BMPReader
 
get8BitLookupTable() - Method in class loci.formats.in.DicomReader
 
get8BitLookupTable() - Method in class loci.formats.in.FakeReader
 
get8BitLookupTable() - Method in class loci.formats.in.GIFReader
 
get8BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader
 
get8BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader
 
get8BitLookupTable() - Method in class loci.formats.in.InCellReader
 
get8BitLookupTable() - Method in class loci.formats.in.IPWReader
 
get8BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader
 
get8BitLookupTable() - Method in class loci.formats.in.JPXReader
 
get8BitLookupTable() - Method in class loci.formats.in.KhorosReader
 
get8BitLookupTable() - Method in class loci.formats.in.LeicaReader
 
get8BitLookupTable() - Method in class loci.formats.in.LIFReader
 
get8BitLookupTable() - Method in class loci.formats.in.MIASReader
 
get8BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader
 
get8BitLookupTable() - Method in class loci.formats.in.NativeND2Reader
 
get8BitLookupTable() - Method in class loci.formats.in.OMETiffReader
 
get8BitLookupTable() - Method in class loci.formats.in.OpenlabReader
 
get8BitLookupTable() - Method in class loci.formats.in.PCXReader
 
get8BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader
 
get8BitLookupTable() - Method in class loci.formats.in.PictReader
 
get8BitLookupTable() - Method in class loci.formats.in.PSDReader
 
get8BitLookupTable() - Method in class loci.formats.in.ScreenReader
 
get8BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader
 
get8BitLookupTable() - Method in class loci.formats.in.TargaReader
 
get8BitLookupTable() - Method in class loci.formats.in.TCSReader
 
get8BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader
 
get8BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader
 
get8BitLookupTable() - Method in class loci.formats.in.ZipReader
 
get8BitLookupTable() - Method in class loci.formats.ReaderWrapper
 
getA00() - Method in class ome.xml.model.AffineTransform
 
getA01() - Method in class ome.xml.model.AffineTransform
 
getA02() - Method in class ome.xml.model.AffineTransform
 
getA10() - Method in class ome.xml.model.AffineTransform
 
getA11() - Method in class ome.xml.model.AffineTransform
 
getA12() - Method in class ome.xml.model.AffineTransform
 
getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
This method wraps the protected method abortRequested to allow the abortions be monitored by J2KReadState.
getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
This method wraps the protected method abortRequested to allow the abortions be monitored by J2KRenderedImage.
getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
This method wraps the protected method abortRequested to allow the abortions be monitored by J2KReadState.
getAbsoluteFile() - Method in class loci.common.Location
 
getAbsoluteFile() - Method in class ome.scifio.io.Location
 
getAbsolutePath() - Method in class loci.common.Location
 
getAbsolutePath() - Method in class ome.scifio.io.Location
 
getAbsoluteTime() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the absoluteTime associated with this Frame.
getAccessTimeMillis() - Method in class loci.tests.testng.Configuration
 
getAcquisitionDate() - Method in class ome.xml.model.Image
 
getAcquisitionMode(String) - Method in class loci.formats.FormatReader
Retrieves an AcquisitionMode enumeration value for the given String.
getAcquisitionMode() - Method in class ome.xml.model.Channel
 
getActiveCellCol() - Method in class loci.poi.hssf.model.Sheet
Returns the active column
getActiveCellCol() - Method in class loci.poi.hssf.record.SelectionRecord
get the active cell's col
getActiveCellRef() - Method in class loci.poi.hssf.record.SelectionRecord
get the active cell's reference number
getActiveCellRow() - Method in class loci.poi.hssf.model.Sheet
Returns the active row
getActiveCellRow() - Method in class loci.poi.hssf.record.SelectionRecord
get the active cell's row
getActiveChannels() - Method in class loci.formats.in.PrairieMetadata
Gets the list of active channel indices, in sorted order.
getActivePane() - Method in class loci.poi.hssf.record.PaneRecord
Get the active pane field for the Pane record.
getActivePane() - Method in class loci.poi.hssf.util.PaneInformation
Returns the active pane
getActualNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Return the actual number of read bytes.
getActualRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Return the actual decoding rate in bits per pixel.
getActualSizeOfElements(short) - Static method in class loci.poi.ddf.EscherArrayProperty
Sometimes the element size is stored as a negative number.
getAdapter(Class<T>) - Static method in class loci.legacy.adapter.AdapterTools
Looks up the adapter instance
getAddMenuCount() - Method in class loci.poi.hssf.record.MMSRecord
get number of add menu options (should be 0)
getAddress() - Method in class loci.poi.hssf.util.RangeAddress
 
getAdjustedIndex(int) - Method in class loci.formats.FileStitcher
Gets the local reader index for use with the given image plane.
getAdjustedOrder() - Method in class loci.formats.AxisGuesser
Gets the adjusted dimension order.
getAdtlDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get for diagonal borders? No idea (its a palette color for the other function we didn't know what was?)
getAdtlDiagLineStyle() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the diagonal border line style? Who the heck ever heard of a diagonal border?
getAdtlFillPattern() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the additional fill pattern
getAdtlPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the additional palette options bitmask (see individual bit getter methods that reference this method)
getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher
 
getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader
 
getAdvancedSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader
Returns an array of FileInfo objects representing the files needed to open the current series.
getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader
 
getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
 
getAdvancedUsedFiles(boolean) - Method in class loci.formats.FileStitcher
 
getAdvancedUsedFiles(boolean) - Method in class loci.formats.FormatReader
 
getAdvancedUsedFiles(boolean) - Method in interface loci.formats.IFormatReader
Returns an array of FileInfo objects representing the files needed to open this dataset.
getAdvancedUsedFiles(boolean) - Method in class loci.formats.ImageReader
 
getAdvancedUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
 
getAirPressure() - Method in class ome.xml.model.ImagingEnvironment
 
getAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the horizontal alignment of the cell.
getAlignment() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the type of horizontal alignment for the cell
getAlignmentOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the alignment options bitmask.
getAlignROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets alignROI
getAllChannels(boolean) - Static method in class loci.ome.io.OMEUtils
Get the channel count of every accessible image on the server.
getAllDates(boolean) - Static method in class loci.ome.io.OMEUtils
Get the creation date of each accessible image on the server.
getAllDescriptions(boolean) - Static method in class loci.ome.io.OMEUtils
Get the description of each accessible image on the server.
getAllEmbeddedObjects() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Gets all embedded OLE2 objects from the Workbook.
getAllExperimenters(boolean) - Static method in class loci.ome.io.OMEUtils
Get the names of every experimenter in the database.
getAllHeights(boolean) - Static method in class loci.ome.io.OMEUtils
Get the height of every accessible image on the server.
getAllIDs(boolean) - Static method in class loci.ome.io.OMEUtils
Get all of the image IDs.
getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory
 
getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.record.RecordFactory
Deprecated.
 
getAllNames(boolean) - Static method in class loci.ome.io.OMEUtils
Get the name of each accessible image on the server.
getAllowedTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
Returns a List containing the allowed TIFFTagSet objects.
getAllPictures() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Gets all pictures from the Workbook.
getAllThumbnails(boolean) - Static method in class loci.ome.io.OMEUtils
Get the thumbnail for each accessible image on the server.
getAllTs(boolean) - Static method in class loci.ome.io.OMEUtils
Get the number of timepoints in each accessible image on the server.
getAllTypes(boolean) - Static method in class loci.ome.io.OMEUtils
Get the pixel type of each accessible image on the server.
getAllWidths(boolean) - Static method in class loci.ome.io.OMEUtils
Get the width of every accessible image on the server.
getAllZs(boolean) - Static method in class loci.ome.io.OMEUtils
Get the number of Z slices in each accessible image on the server.
getAlpha(int) - Method in class loci.formats.gui.Index16ColorModel
 
getAlpha(int) - Method in class loci.formats.gui.SignedColorModel
 
getAlpha(Object) - Method in class loci.formats.gui.SignedColorModel
 
getAlpha(int) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getAlpha(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getAlpha() - Method in class ome.xml.model.primitives.Color
Returns the alpha component of this color.
getAlphas() - Method in class loci.formats.gui.Index16ColorModel
Return the array of alpha color components.
getAlternateExpression() - Method in class loci.poi.hssf.record.WSBoolRecord
whether alternate expression evaluation is on
getAlternateExpression() - Method in class loci.poi.hssf.usermodel.HSSFSheet
whether alternate expression evaluation is on
getAlternateFormula() - Method in class loci.poi.hssf.record.WSBoolRecord
whether alternative formula entry is on
getAlternateFormula() - Method in class loci.poi.hssf.usermodel.HSSFSheet
whether alternative formula entry is on
getAlternateMD5() - Method in class loci.tests.testng.Configuration
 
getAmplificationGain() - Method in class ome.xml.model.Detector
 
getAnchor() - Method in class loci.poi.hssf.usermodel.HSSFShape
 
getAnchorHeightInPoints(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
Calculates the height of a client anchor in points.
getAnchorId() - Method in class loci.poi.hssf.record.ObjectLinkRecord
Get the anchor id field for the ObjectLink record.
getAnchorType() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
Gets the anchor type
getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the negative support of the high-pass analysis filter.
getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the negative support of the high-pass analysis filter.
getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the negative support of the high-pass analysis filter.
getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the negative support of the high-pass analysis filter.
getAnHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the negative support of the high-pass analysis filter.
getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the positive support of the high-pass analysis filter.
getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the positive support of the high-pass analysis filter.
getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the positive support of the high-pass analysis filter.
getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the positive support of the high-pass analysis filter.
getAnHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the positive support of the high-pass analysis filter.
getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the negative support of the low-pass analysis filter.
getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the negative support of the low-pass analysis filter.
getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the negative support of the low-pass analysis filter.
getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the negative support of the low-pass analysis filter.
getAnLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the negative support of the low-pass analysis filter.
getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the positive support of the low-pass analysis filter.
getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the positive support of the low-pass analysis filter.
getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the positive support of the low-pass analysis filter.
getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the positive support of the low-pass analysis filter.
getAnLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the positive support of the low-pass analysis filter.
getAnnotator() - Method in class ome.xml.model.Annotation
 
getAnSubbandTree(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
Returns a reference to the root of subband tree structure representing the subband decomposition for the specified tile-component.
getAnSubbandTree(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component.
getAnSubbandTree(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler
Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component.
getAnSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps
Returns a reference to the root of subband tree structure representing the subband decomposition for the specified tile-component.
getAnSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component of the source.
getApplicationName() - Method in class loci.poi.hpsf.SummaryInformation
Returns the application name (or null).
getApproximationAccuracy() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
Returns ApproximationAccuracy.
getArabic() - Method in class loci.poi.hssf.record.WindowTwoRecord
is this arabic?
getArcID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getArcID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getArcID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getArcID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getArcLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getArcLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getArcLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getArcLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getArcManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getArcManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getArcManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getArcManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getArcModel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getArcModel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getArcModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getArcModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getArcPower(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getArcPower(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getArcPower(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getArcPower(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getArcSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getArcSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getArcSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getArcSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getArcType(String) - Method in class loci.formats.FormatReader
Retrieves an ArcType enumeration value for the given String.
getArcType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getArcType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getArcType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getArcType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getArea() - Method in class loci.poi.hssf.util.Region
 
getAreaAt(int) - Method in class loci.poi.hssf.record.MergeCellsRecord
return the MergedRegion at the given index.
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaAPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNAPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNVPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaVPtg
 
getAreaReference(Workbook) - Method in class loci.poi.hssf.record.NameRecord
gets the reference , the area only (range)
getArgument() - Method in class mdbtools.dbengine.sql.FunctionDef
 
getArray(String, int[], int[]) - Method in interface loci.formats.services.NetCDFService
Retrieves an HDF path's values.
getArray(String, int[], int[]) - Method in class loci.formats.services.NetCDFServiceImpl
 
getAsBytes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns the data as an uninterpreted array of bytes.
getAsChars() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns TIFFTag.TIFF_SHORT data as an array of chars (unsigned 16-bit integers).
getAsDouble(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns data in any format as a double.
getAsDoubles() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns TIFFTag.TIFF_DOUBLE data as an array of doubles (64-bit floating-point values).
getAsFloat(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns data in any format as a float.
getAsFloats() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns TIFFTag.TIFF_FLOAT data as an array of floats (32-bit floating-point values).
getAsInt(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns data in any format as an int.
getAsInts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns TIFFTag.TIFF_SLONG data as an array of ints (signed 32-bit integers).
getAsLong(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns data in any format as a long.
getAsLongs() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns TIFFTag.TIFF_LONG or TIFF_IFD_POINTER data as an array of longs (signed 64-bit integers).
getAsMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Converts the directory to a metadata object.
getAsNativeNode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns the TIFFField as a node named either "TIFFField" or "TIFFIFD" as described in the TIFF native image metadata specification.
getAsRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns a TIFFTag.TIFF_RATIONAL data item as a two-element array of ints.
getAsRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns TIFFTag.TIFF_RATIONAL data as an array of 2-element arrays of longs.
getAsShorts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns TIFFTag.TIFF_SSHORT data as an array of shorts (signed 16-bit integers).
getAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
Returns the association which associates a color channel to a color component in the color space of the image.
getAsSRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns a TIFFTag.TIFF_SRATIONAL data item as a two-element array of ints.
getAsSRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns TIFFTag.TIFF_SRATIONAL data as an array of 2-element arrays of ints.
getAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns a TIFFTag.TIFF_ASCII value as a String.
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
getAttenuation() - Method in class ome.xml.model.LightSourceSettings
 
getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Extracts the value of the attribute from name.
getAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getAttributeDataType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeDefaultValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeDescription(String, String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeEnumerations(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeList() - Method in interface loci.formats.services.NetCDFService
Retrieves an exhaustive list of the HDF paths for all attributes in the HDF document.
getAttributeList() - Method in class loci.formats.services.NetCDFServiceImpl
 
getAttributeListMaxLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeListMinLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeMaxValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeMinValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributes() - Method in class loci.poi.hssf.record.FontRecord
get the font attributes (see individual bit getters that reference this method)
getAttributeValue(String) - Method in interface loci.formats.services.NetCDFService
Retrieves an attribute's value.
getAttributeValue(String) - Method in class loci.formats.services.NetCDFServiceImpl
 
getAttributeValueType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAuthor() - Method in class loci.poi.hpsf.SummaryInformation
Returns the author (or null).
getAuthor() - Method in class loci.poi.hssf.record.NoteRecord
Name of the original comment author
getAuthor() - Method in class loci.poi.hssf.usermodel.HSSFComment
Name of the original comment author
getAutobreaks() - Method in class loci.poi.hssf.record.WSBoolRecord
show automatic page breaks or not
getAutobreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet
show automatic page breaks or not
getAutoContinue() - Method in class loci.poi.hssf.record.RecordInputStream
 
getAutoscaleInfo() - Method in class loci.plugins.in.ImporterOptions
 
getAutoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
 
getAutoThreshold(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
 
getAxisCount(int) - Method in class loci.formats.AxisGuesser
Gets the number of axes in the pattern of the given type.
getAxisCountC() - Method in class loci.formats.AxisGuesser
Gets the number of C axes in the pattern.
getAxisCountS() - Method in class loci.formats.AxisGuesser
Gets the number of S axes in the pattern.
getAxisCountT() - Method in class loci.formats.AxisGuesser
Gets the number of T axes in the pattern.
getAxisCountZ() - Method in class loci.formats.AxisGuesser
Gets the number of Z axes in the pattern.
getAxisGuesser() - Method in class loci.formats.FileStitcher
Gets the axis guesser object used to guess which dimensional axes are which.
getAxisType(String) - Static method in class loci.formats.AxisGuesser
Returns a best guess of the given label's axis type.
getAxisType() - Method in class loci.poi.hssf.record.AxisLineFormatRecord
Get the axis type field for the AxisLineFormat record.
getAxisType() - Method in class loci.poi.hssf.record.AxisParentRecord
Get the axis type field for the AxisParent record.
getAxisType() - Method in class loci.poi.hssf.record.AxisRecord
Get the axis type field for the Axis record.
getAxisTypes() - Method in class loci.formats.AxisGuesser
Gets the guessed axis type for each dimensional block.
getAxisTypes() - Method in class loci.formats.FileStitcher
Gets the axis type for each dimensional block.
getBackcolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord
Get the backcolor index field for the AreaFormat record.
getBackground() - Method in class loci.poi.hssf.record.TickRecord
Get the background field for the Tick record.
getBackground() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getBackgroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord
Get the background color field for the AreaFormat record.
getBackgroundValue() - Method in class loci.plugins.util.RecordedImageProcessor
 
getBackup() - Method in class loci.poi.hssf.record.BackupRecord
get the backup flag
getBackupFlag() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
determine whether the Excel GUI will backup the workbook when saving.
getBackuppos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getBackupRecord() - Method in class loci.poi.hssf.model.Workbook
Returns the position of the backup record.
getBadFontHeight() - Method in class loci.poi.hssf.record.RowRecord
get whether the font and row height are not compatible
getBandSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
getBarSpace() - Method in class loci.poi.hssf.record.BarRecord
Get the bar space field for the Bar record.
getBaseReader() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.READER.
getBaseUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Get the base unit field for the AxisOptions record.
getBATArray() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getBATCount() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getBestIndex(Color) - Method in class loci.plugins.util.RecordedImageProcessor
 
getBigBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument
 
getBigBlockSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.BATBlock
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.DocumentBlock
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.HeaderBlockWriter
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.PropertyBlock
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlockList
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.SmallDocumentBlock
 
getBigEndian() - Method in class ome.xml.model.BinData
 
getBigEndian() - Method in class ome.xml.model.Pixels
 
getBinaryFile() - Method in class ome.xml.model.FileAnnotation
 
getBinaryFileFileName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBinaryFileFileName(int) - Method in class loci.formats.meta.DummyMetadata
 
getBinaryFileFileName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBinaryFileFileName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBinaryFileMIMEType(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBinaryFileMIMEType(int) - Method in class loci.formats.meta.DummyMetadata
 
getBinaryFileMIMEType(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBinaryFileMIMEType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBinaryFileSize(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBinaryFileSize(int) - Method in class loci.formats.meta.DummyMetadata
 
getBinaryFileSize(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBinaryFileSize(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBinaryOnly() - Method in class ome.xml.model.OME
 
getBinaryOnlyMetadataFile(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBinaryOnlyMetadataFile(int) - Method in class loci.formats.meta.DummyMetadata
 
getBinaryOnlyMetadataFile(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBinaryOnlyMetadataFile(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBinaryOnlyUUID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBinaryOnlyUUID(int) - Method in class loci.formats.meta.DummyMetadata
 
getBinaryOnlyUUID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBinaryOnlyUUID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBinData() - Method in class ome.xml.model.BinaryFile
 
getBinData(int) - Method in class ome.xml.model.Mask
 
getBinData(int) - Method in class ome.xml.model.Pixels
 
getBinning(String) - Method in class loci.formats.FormatReader
Retrieves an Binning enumeration value for the given String.
getBinning() - Method in class loci.formats.in.MetamorphHandler
 
getBinning() - Method in class ome.xml.model.DetectorSettings
 
getBinnings() - Method in class loci.formats.in.ND2Handler
 
getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox
Returns the bit depths for all the image components.
getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Returns the bit depth for all the image components.
getBitDepth() - Method in class loci.formats.in.PrairieMetadata
Gets the bitDepth recorded in the configuration.
getBitDepths() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
Return the bit depths for all the color components.
getBitOffset() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
getBits(int) - Method in class loci.formats.codec.BitBuffer
Returns an int value representing the value of the bits read from the byte array, from the current position.
getBitsPerPixel() - Method in class loci.formats.FileStitcher
 
getBitsPerPixel() - Method in class loci.formats.FormatReader
 
getBitsPerPixel() - Method in interface loci.formats.IFormatReader
Gets the number of valid bits per pixel.
getBitsPerPixel() - Method in class loci.formats.ImageReader
 
getBitsPerPixel() - Method in class loci.formats.ReaderWrapper
 
getBitsPerSample() - Method in class loci.formats.tiff.IFD
Retrieves the image's bits per sample (TIFF tag BitsPerSample) from a given TIFF IFD.
getBlipRecord() - Method in class loci.poi.ddf.EscherBSERecord
 
getBlipType(byte) - Method in class loci.poi.ddf.EscherBSERecord
Retrieve the string representation given a blip id.
getBlipTypeMacOS() - Method in class loci.poi.ddf.EscherBSERecord
The expected blip type under MacOS (failure to match this blip type will result in Excel converting to this format).
getBlipTypeWin32() - Method in class loci.poi.ddf.EscherBSERecord
The expected blip type under windows (failure to match this blip type will result in Excel converting to this format).
getBlock(int) - Method in class loci.formats.FilePattern
Gets the specified numerical block.
getBlock() - Method in class loci.formats.FilePatternBlock
 
getBlockAligned() - Method in class jj2000.j2k.roi.encoder.ROIScaler
This function returns the blockAligned flag
getBlocks() - Method in class loci.formats.FilePattern
Gets each numerical block.
getBlocks() - Method in class loci.poi.poifs.storage.RawDataBlockList
 
getBlocks() - Method in class loci.poi.poifs.storage.SmallDocumentBlockList
 
getBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlock
 
getBlue(int) - Method in class loci.formats.gui.Index16ColorModel
 
getBlue(int) - Method in class loci.formats.gui.SignedColorModel
 
getBlue(Object) - Method in class loci.formats.gui.SignedColorModel
 
getBlue(int) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getBlue(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getBlue() - Method in class loci.poi.ddf.EscherRGBProperty
 
getBlue() - Method in class ome.xml.model.primitives.Color
Returns the blue component of this color.
getBlues() - Method in class loci.formats.gui.Index16ColorModel
Return the array of blue color components.
getBoldWeight() - Method in class loci.poi.hssf.record.FontRecord
get the bold weight for this font (100-1000dec or 0x64-0x3e8).
getBoldweight() - Method in class loci.poi.hssf.usermodel.HSSFFont
get the boldness to use
getBooleanAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getBooleanAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBooleanAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getBooleanAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBooleanAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBooleanAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getBooleanAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getBooleanAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBooleanAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBooleanAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBooleanAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getBooleanAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBooleanAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBooleanAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getBooleanAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getBooleanAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getBooleanAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBooleanAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBooleanAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getBooleanAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBooleanAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBooleanAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBooleanAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getBooleanAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBooleanAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBooleanAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBooleanAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getBooleanAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBooleanAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBooleanAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata
 
getBooleanAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata
 
getBooleanAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getBooleanAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getBooleanCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell
get the value of the cell as a boolean.
getBooleanOption(String) - Method in class loci.plugins.prefs.OptionsList
Gets the boolean option with the given key.
getBooleanValue() - Method in class loci.poi.hssf.record.BoolErrRecord
get the value for the cell
getBorderBottom() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the borderline style for the bottom border
getBorderBottom() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the type of border to use for the bottom border of the cell
getBorderLeft() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the borderline style for the left border
getBorderLeft() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the type of border to use for the left border of the cell
getBorderOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the border options bitmask (see the corresponding bit getter methods that reference back to this one)
getBorderRight() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the borderline style for the right border
getBorderRight() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the type of border to use for the right border of the cell
getBorderTop() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the borderline style for the top border
getBorderTop() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the type of border to use for the top border of the cell
getBorderType() - Method in class loci.poi.hssf.record.FrameRecord
Get the border type field for the Frame record.
getBottomBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the color to use for the left border
getBottomBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the palette index for the bottom border
getBoundaryHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Retrieve the boundary height of the metafile drawing commands
getBoundaryLeft() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Retrieve the left boundary of the metafile drawing commands
getBoundaryTop() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Retrieve the top boundary of the metafile drawing commands
getBoundaryWidth() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Retrieve the boundary width of the metafile drawing commands
getBounds() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns a Rectangle indicating the image bounds.
getBounds() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getBounds() - Method in class loci.poi.ddf.EscherPictBlip
 
getBoundWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFCell
Returns the Workbook that this Cell is bound to
getBoxClass(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Returns the Box class for the box with the provided type.
getBranchIndex(Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
getBrand() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
Returns the brand of this file type box.
getBreak(short) - Method in class loci.poi.hssf.record.PageBreakRecord
Retrieves the region at the row/column indicated
getBreaksIterator() - Method in class loci.poi.hssf.record.PageBreakRecord
 
getBSERecord(int) - Method in class loci.poi.hssf.model.Workbook
 
getBspos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getBubbleSeriesType() - Method in class loci.poi.hssf.record.SeriesRecord
Get the bubble series type field for the Series record.
getBucketSSTOffset() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
getBuffer() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer
Returns the byte buffer.
getBuffer() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
Returns the byte-buffer used to store the codestream header.
getBufferedImage() - Method in class loci.plugins.util.RecordedImageProcessor
 
getBufferLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
Returns the number of bytes used in the codestream header's buffer.
getBufferSize() - Method in class loci.common.NIOFileHandle
Gets the current buffer size.
getBufferSize() - Method in class ome.scifio.io.NIOFileHandle
Gets the current buffer size.
getBuild() - Method in class loci.poi.hssf.record.BOFRecord
get the build that wrote this file
getBuildDate(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getBuildYear() - Method in class loci.poi.hssf.record.BOFRecord
Year of the build that wrote this file
getBuiltin() - Method in class loci.poi.hssf.record.StyleRecord
if this is a builtin style get the number of the built in style
getBuiltinFormat(String) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat
get the format index that matches the given format string
getBuiltinFormat(short) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat
get the format string that matches the given format index
getBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat
 
getBuiltInName() - Method in class loci.poi.hssf.record.NameRecord
Gets the Built In Name
getBypass() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets bypass
getByte(int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
Returns the byte buffered at the given position in the buffer.
getByteArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian
Copy a portion of a byte array
getByteArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Gets the byte array from an IIOMetadataNode.
getByteBuffer() - Method in class loci.common.ByteArrayHandle
Gets the byte buffer backing this handle.
getByteBuffer() - Method in class ome.scifio.io.ByteArrayHandle
Gets the byte buffer backing this handle.
getByteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the byte count or 0 if the DocumentSummaryInformation does not contain a byte count.
getByteElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Gets its byte value from an IIOMetadataNode.
getByteInputBuffer() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
Returns the underlying 'ByteInputBuffer' from where the MQ coded input bytes are read.
getByteOrder() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
getByteOrder() - Method in class loci.poi.hpsf.PropertySet
Returns the property set stream's low-level "byte order" field.
getByteOrder() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getByteOrdering() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
 
getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataInput
Returns the endianess (i.e., byte ordering) of the implementing class.
getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataOutput
Returns the endianness (i.e., byte ordering) of the implementing class.
getByteOrdering() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
Returns the endianess (i.e., byte ordering) of the implementing class.
getByteOrdering() - Method in class jj2000.j2k.util.ISRandomAccessIO
Returns the endianess (i.e., byte ordering) of multi-byte I/O operations.
getBytes() - Method in class loci.common.ByteArrayHandle
Gets the byte array backing this FileHandle.
getBytes(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of unsigned bytes, one per channel.
getBytes(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of unsigned bytes, one per channel.
getBytes(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of unsigned bytes, one per channel.
getBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools
Get the bytes from an image, merging the channels as necessary.
getBytes() - Method in class loci.poi.hpsf.ClassID
Gets the bytes making out the class ID.
getBytes() - Method in class loci.poi.hssf.record.formula.Ptg
 
getBytes() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Method getBytes - get the bytes of just the HSSF portions of the XLS file.
getBytes() - Method in class ome.scifio.io.ByteArrayHandle
Gets the byte array backing this FileHandle.
getBytesPerElement() - Method in enum loci.formats.tiff.IFDType
Retrieves the number of bytes per element.
getBytesPerPixel(int) - Static method in class loci.formats.FormatTools
Retrieves how many bytes per pixel the current plane or section has.
getBytesPerPixel(String) - Static method in class loci.formats.FormatTools
Retrieves the number of bytes per pixel in the current plane.
getBytesPerPixel(int) - Method in class loci.formats.in.LegacyND2Reader
 
getBytesPerSample() - Method in class loci.formats.tiff.IFD
Retrieves the image's bytes per sample (derived from tag BitsPerSample) from this IFD.
getC() - Method in class loci.formats.gui.ImageViewer
Gets the C value of the currently displayed image.
getCache() - Method in class loci.formats.gui.CacheComponent
 
getCache() - Method in class loci.plugins.util.BFVirtualStack
 
getCacheListeners() - Method in class loci.formats.cache.Cache
 
getCacheListeners() - Method in interface loci.formats.cache.CacheReporter
Gets a list of all registered status update listeners.
getCacheListeners() - Method in class loci.formats.cache.CacheStrategy
 
getCacheOfSavedSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Retrieve the cache of the saved size
getCacheOfSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Retrieve the cache of the metafile size
getCalcMode() - Method in class loci.poi.hssf.record.CalcModeRecord
get the calc mode flag for formulas
getCalibratedMagnification() - Method in class ome.xml.model.Objective
 
getCalibrationTable() - Method in class loci.plugins.util.RecordedImageProcessor
 
getCameraModel() - Method in class loci.formats.in.ND2Handler
 
getCanonicalFile() - Method in class loci.common.Location
 
getCanonicalFile() - Method in class ome.scifio.io.Location
 
getCanonicalPath() - Method in class loci.common.Location
Returns the canonical path to this file.
getCanonicalPath() - Method in class ome.scifio.io.Location
Returns the canonical path to this file.
getCategory() - Method in class loci.formats.in.BaseZeissReader.Tag
 
getCategory() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the category (or null).
getCategoryAxisCross() - Method in class loci.poi.hssf.record.ValueRangeRecord
Get the category axis cross field for the ValueRange record.
getCategoryDataType() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
Get the category data type field for the DefaultDataLabelTextProperties record.
getCategoryDataType() - Method in class loci.poi.hssf.record.SeriesRecord
Get the category data type field for the Series record.
getCategorySpace() - Method in class loci.poi.hssf.record.BarRecord
Get the category space field for the Bar record.
getCausalCXInfo() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets causalCXInfo
getCBegin(int) - Method in class loci.plugins.in.ImporterOptions
 
getCBegin(int) - Method in class loci.plugins.in.ImportProcess
 
getCBlkHeight(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec
Returns the code-block height: for the specified tile/component for the specified tile for the specified component default value The value returned depends on the value of the variable 'type' which can take the following values : SPEC_DEF -> Default value is returned.
getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
Returns the code-block height for the specified tile and component.
getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
Returns the code-block height for the specified tile and component.
getCBlkInfo() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
Gets the reference to the CBlkInfo array
getCBlkWidth(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec
Returns the code-block width : for the specified tile/component for the specified tile for the specified component default value The value returned depends on the value of the variable 'type' which can take the following values :
SPEC_DEF -> Default value is returned.
getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
Returns the code-block width for the specified tile and component.
getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
Returns the code-block width for the specified tile and component.
getCbULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the vertical code-block partition origin.
getCbULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the horizontal code-block partition origin.Allowable values are 0 and 1, nothing else.
getCbULX() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder
Returns the horizontal code-block partition origin.
getCbULX() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
Returns the horizontal offset of the code-block partition.
getCbULX() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer
Returns the horizontal code-block partition origin.
getCbULX() - Method in class jj2000.j2k.quantization.quantizer.Quantizer
Returns the horizontal offset of the code-block partition.
getCbULX() - Method in class jj2000.j2k.roi.encoder.ROIScaler
Returns the horizontal offset of the code-block partition.
getCbULX() - Method in class jj2000.j2k.roi.ROIDeScaler
Returns the horizontal code-block partition origin.
getCbULX() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps
Returns the horizontal offset of the code-block partition.
getCbULX() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the horizontal offset of the code-block partition.
getCbULX() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData
Returns the horizontal code-block partition origin.
getCbULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the vertical code-block partition origin.
getCbULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the vertical code-block partition origin.
getCbULY() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder
Returns the vertical code-block partition origin.
getCbULY() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
Returns the vertical offset of the code-block partition.
getCbULY() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer
Returns the vertical code-block partition origin.
getCbULY() - Method in class jj2000.j2k.quantization.quantizer.Quantizer
Returns the vertical offset of the code-block partition.
getCbULY() - Method in class jj2000.j2k.roi.encoder.ROIScaler
Returns the vertical offset of the code-block partition.
getCbULY() - Method in class jj2000.j2k.roi.ROIDeScaler
Returns the vertical code-block partition origin.
getCbULY() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps
Returns the vertical offset of the code-block partition.
getCbULY() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the vertical offset of the code-block partition.
getCbULY() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData
Returns the vertical code-block partition origin Allowable values are 0 and 1, nothing else.
getCCount(int) - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.SERIES.
getCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow
get the hssfcell representing a given column (logical cell) 0-based.
getCellComment() - Method in class loci.poi.hssf.usermodel.HSSFCell
Returns comment associated with this cell
getCellComment(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Returns cell comment for the specified row and column
getCellFormula() - Method in class loci.poi.hssf.usermodel.HSSFCell
 
getCellNum() - Method in class loci.poi.hssf.usermodel.HSSFCell
get the cell's number within the row
getCellOffsetAt(int) - Method in class loci.poi.hssf.record.DBCellRecord
return the cell offset in the array
getCellOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
gets the options bitmask - you can also use corresponding option bit getters (see other methods that reference this one)
getCells() - Method in class loci.poi.hssf.util.AreaReference
return the cell references that define this area
getCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFCell
get the style for the cell.
getCellStyleAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
get the cell style object at the given index
getCellType() - Method in class loci.poi.hssf.usermodel.HSSFCell
get the cells type (numeric, formula or string)
getCellValueRecord() - Method in class loci.poi.hssf.usermodel.HSSFCell
Should only be used by HSSFSheet and friends.
getCEnd(int) - Method in class loci.plugins.in.ImporterOptions
 
getCEnd(int) - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getCenter() - Method in class loci.poi.hssf.usermodel.HSSFFooter
Get the center of the footer.
getCenter() - Method in class loci.poi.hssf.usermodel.HSSFHeader
Get the center of the header.
getChannel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
Returns the defined channels.
getChannel() - Method in class loci.formats.in.PrairieMetadata.PFile
Gets the channel associated with this File.
getChannel(int) - Method in class ome.xml.model.Pixels
 
getChannelAcquisitionMode(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelAcquisitionMode(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelAcquisitionMode(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelAcquisitionMode(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelColors() - Method in class loci.formats.in.ND2Handler
 
getChannelContrastMethod(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelContrastMethod(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelContrastMethod(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelContrastMethod(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelCount() - Method in class loci.formats.in.SDTReader
Gets the number of spectral channels.
getChannelCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelCount() - Method in class loci.tests.testng.Configuration
 
getChannelDimCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getChannelDimLength(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getChannelDimLengths() - Method in class loci.formats.ChannelFiller
 
getChannelDimLengths() - Method in class loci.formats.DimensionSwapper
 
getChannelDimLengths() - Method in class loci.formats.FileStitcher
 
getChannelDimLengths() - Method in class loci.formats.FormatReader
 
getChannelDimLengths() - Method in interface loci.formats.IFormatReader
Deprecated. 
getChannelDimLengths() - Method in class loci.formats.ImageReader
 
getChannelDimLengths() - Method in class loci.formats.in.ICSReader
 
getChannelDimLengths() - Method in class loci.formats.ReaderWrapper
 
getChannelDimType(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getChannelDimTypes() - Method in class loci.formats.ChannelFiller
 
getChannelDimTypes() - Method in class loci.formats.DimensionSwapper
 
getChannelDimTypes() - Method in class loci.formats.FileStitcher
 
getChannelDimTypes() - Method in class loci.formats.FormatReader
 
getChannelDimTypes() - Method in interface loci.formats.IFormatReader
Deprecated. 
getChannelDimTypes() - Method in class loci.formats.ImageReader
 
getChannelDimTypes() - Method in class loci.formats.in.ICSReader
 
getChannelDimTypes() - Method in class loci.formats.ReaderWrapper
 
getChannelEmissionWavelength(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelEmissionWavelength(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelEmissionWavelength(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelEmissionWavelength(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelExcitationWavelength(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelExcitationWavelength(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelExcitationWavelength(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelExcitationWavelength(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelFiller() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getChannelFilterSetRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelFilterSetRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelFilterSetRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelFilterSetRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelFluor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelFluor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelFluor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelFluor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelGlobalMaximum(int) - Method in class loci.formats.MinMaxCalculator
Retrieves a specified channel's global maximum.
getChannelGlobalMinimum(int) - Method in class loci.formats.MinMaxCalculator
Retrieves a specified channel's global minimum.
getChannelID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelIlluminationType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelIlluminationType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelIlluminationType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelIlluminationType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelKnownMaximum(int) - Method in class loci.formats.MinMaxCalculator
Retrieves the specified channel's maximum based on the images that have been read.
getChannelKnownMinimum(int) - Method in class loci.formats.MinMaxCalculator
Retrieves the specified channel's minimum based on the images that have been read.
getChannelLabel(int) - Method in class loci.formats.in.TextReader
Gets the label for the given channel.
getChannelLightSourceSettingsAttenuation(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelLightSourceSettingsAttenuation(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelLightSourceSettingsAttenuation(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelLightSourceSettingsAttenuation(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelLightSourceSettingsID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelLightSourceSettingsID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelLightSourceSettingsID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelLightSourceSettingsID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelLightSourceSettingsWavelength(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelLightSourceSettingsWavelength(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelLightSourceSettingsWavelength(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelLightSourceSettingsWavelength(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getChannelName() - Method in class loci.formats.in.MetamorphHandler
 
getChannelName() - Method in class loci.formats.in.PrairieMetadata.PFile
Gets the channelName associated with this File.
getChannelName(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelName(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelName(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelName(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelName(int) - Method in class loci.tests.testng.Configuration
 
getChannelNames() - Method in class loci.formats.in.ND2Handler
 
getChannelNDFilter(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelNDFilter(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelNDFilter(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelNDFilter(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelPinholeSize(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelPinholeSize(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelPinholeSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelPinholeSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelPockelCellSetting(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelPockelCellSetting(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelPockelCellSetting(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelPockelCellSetting(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannels(int) - Method in class loci.formats.in.LegacyND2Reader
 
getChannelSamplesPerPixel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getChannelSamplesPerPixel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getChannelSamplesPerPixel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getChannelSamplesPerPixel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getChannelSeparator() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getCharacterPos() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun
 
getCharCount() - Method in class loci.poi.hpsf.SummaryInformation
Returns the character count or 0 if the SummaryInformation does not contain a char count.
getCharCount() - Method in class loci.poi.hssf.record.UnicodeString
get the number of characters in the string
getCharPart(String) - Method in class loci.poi.hssf.util.RangeAddress
 
getCharset() - Method in class loci.poi.hssf.record.FontRecord
get the character set
getCharSet() - Method in class loci.poi.hssf.usermodel.HSSFFont
get character-set to use.
getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
Get the chart group index field for the SeriesChartGroupIndex record.
getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
Get the chart group index field for the SeriesToChartGroup record.
getCharWidth(char) - Method in class loci.poi.hssf.usermodel.FontDetails
Retrieves the width of the specified character.
getCheckboxes(GenericDialog) - Static method in class loci.plugins.util.WindowTools
 
getChild() - Method in class loci.plugins.util.RecordedImageProcessor
 
getChild(int) - Method in class loci.poi.ddf.EscherRecord
Returns the indexed child record.
getChildById(short) - Method in class loci.poi.ddf.EscherContainerRecord
 
getChildIndex() - Method in class loci.poi.poifs.property.Property
Get the child property (its index in the Property Table)
getChildNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getChildPolicy(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getChildRecords() - Method in class loci.poi.ddf.EscherContainerRecord
 
getChildRecords() - Method in class loci.poi.ddf.EscherRecord
 
getChildRecords() - Method in class loci.poi.ddf.UnknownEscherRecord
 
getChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
Returns a list of all shapes contained by the patriarch.
getChildren() - Method in interface loci.poi.hssf.usermodel.HSSFShapeContainer
 
getChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
Return all children contained by this shape.
getChildren() - Method in class loci.poi.poifs.property.DirectoryProperty
Get an iterator over the children of this Parent; all elements are instances of Property.
getChildren() - Method in interface loci.poi.poifs.property.Parent
Get an iterator over the children of this Parent; all elements are instances of Property.
getChildrenByTagName(Element, String) - Static method in class ome.xml.model.AbstractOMEModelObject
Retrieves all the children of an element that have a given tag name.
getChoices(GenericDialog) - Static method in class loci.plugins.util.WindowTools
 
getClasses() - Method in class loci.formats.ClassList
Gets the list of classes as an array.
getClassID() - Method in class loci.poi.hpsf.PropertySet
Returns the property set stream's low-level "class ID" field.
getClassID() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getClip() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getClipboardFormat() - Method in class loci.poi.hpsf.Thumbnail
Returns an int representing the Clipboard Format
getClipboardFormatTag() - Method in class loci.poi.hpsf.Thumbnail
Returns an int representing the Clipboard Format Tag
getClipBounds() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getClipBounds(Rectangle) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getClipRect() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getClipRect() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getCO2Percent() - Method in class ome.xml.model.ImagingEnvironment
 
getCode() - Method in class loci.common.adapter.CodedEnumAdapter.LegacyWrapper
 
getCode() - Method in class loci.common.adapter.CodedEnumAdapter.ModernWrapper
 
getCode() - Method in interface loci.common.enumeration.CodedEnum
Retrieves the integer "code" for this enumeration.
getCode() - Method in enum loci.formats.codec.CompressionType
Implemented as specified by the CodedEnum I/F.
getCode() - Method in enum loci.formats.codec.JPEG2000BoxType
Implemented as specified by the CodedEnum I/F.
getCode() - Method in enum loci.formats.codec.JPEG2000SegmentMarker
Implemented as specified by the CodedEnum I/F.
getCode() - Method in enum loci.formats.tiff.IFDType
 
getCode() - Method in enum loci.formats.tiff.PhotoInterp
 
getCode() - Method in enum loci.formats.tiff.TiffCompression
 
getCode() - Method in interface ome.scifio.enumeration.CodedEnum
Retrieves the integer "code" for this enumeration.
getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
Returns the specified coded code-block, for the specified component, in the current tile.
getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in interface jj2000.j2k.entropy.decoder.CodedCBlkDataSrcDec
Returns the specified coded code-block, for the specified component, in the current tile.
getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
Returns the specified code-block in the current tile for the specified component, as a copy (see below).
getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec
Returns the specified code-block in the current tile for the specified component, as a copy (see below).
getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer
Returns the specified code-block in the current tile for the specified component, as a copy (see below).
getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler
Returns the specified code-block in the current tile for the specified component, as a copy (see below).
getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec
Returns the specified code-block in the current tile for the specified component, as a copy (see below).
getCodeBlockSize() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets codeBlockSize.
getCodeBlockSize() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets codeBlockSize
getCodecName() - Method in enum loci.formats.tiff.TiffCompression
Retrieves the name of the TIFF compression codec.
getCodecOptions() - Method in class loci.formats.tiff.TiffParser
Retrieves the current set of codec options being used to decompress pixel data.
getCodepage() - Method in class loci.poi.hpsf.CustomProperties
Gets the codepage.
getCodepage() - Method in class loci.poi.hpsf.Section
Gets the section's codepage, if any.
getCodepage() - Method in class loci.poi.hssf.record.CodepageRecord
get the codepage for this workbook
getCodepage() - Method in class loci.poi.hssf.record.InterfaceHdrRecord
get the codepage for the file
getCodeSegSymbol() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets codeSegSymbol
getCodestreamOffset() - Method in class loci.formats.in.JPEG2000MetadataParser
Retrieves the offset to the first contiguous codestream.
getCodestreamPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the pixel type as specified in the header.
getCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
This method creates and returns an array of positions to contiguous codestreams in the file
getCodestreamSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the number of channels the image has as specified in the header.
getCodestreamSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the width of the image as specified in the header.
getCodestreamSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the height of the image as specified in the header.
getCol() - Method in class loci.poi.hssf.util.CellReference
 
getCol1() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The column number for the top-left position.
getCol1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
getCol2() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The column of the bottom right corner of this shape.
getCol2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
getColapsed() - Method in class loci.poi.hssf.record.RowRecord
get whether or not to colapse this row
getColInfo(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
getCollapsed() - Method in class loci.poi.hssf.record.ColumnInfoRecord
get whether the cells are collapsed
getColLevelMax() - Method in class loci.poi.hssf.record.GutsRecord
get the maximum outline level for the col gutter.
getColor(short) - Method in class loci.poi.hssf.record.PaletteRecord
Returns the color value at a given index
getColor() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getColor() - Method in class loci.poi.hssf.usermodel.HSSFFont
get the color for the font
getColor(short) - Method in class loci.poi.hssf.usermodel.HSSFPalette
Retrieves the color at a given index
getColor() - Method in class ome.xml.model.Channel
 
getColor() - Method in class ome.xml.model.Well
 
getColor1() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getColor2() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getColor3() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getColor4() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
Returns the currently set TIFFColorConverter object, or null if none is set.
getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
Returns the current TIFFColorConverter object that will be used to perform color conversion when writing the image, or null if none is set.
getColorMode() - Method in class loci.plugins.in.ImporterOptions
 
getColorModeInfo() - Method in class loci.plugins.in.ImporterOptions
 
getColorModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the ColorModel of the image.
getColorModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getColorModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getColorModel() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
Returns the color model created from the palette box.
getColorModel() - Method in class loci.formats.FormatWriter
 
getColorModel() - Method in interface loci.formats.IFormatWriter
Gets the color model.
getColorModel() - Method in class loci.formats.ImageWriter
 
getColorModel() - Method in class loci.formats.WriterWrapper
 
getColorModel() - Method in class loci.plugins.util.RecordedImageProcessor
 
getColorModes() - Method in class loci.plugins.in.ImporterOptions
 
getColorPaletteIndex() - Method in class loci.poi.hssf.record.FontRecord
get the font's color palette index
getColourPaletteIndex() - Method in class loci.poi.hssf.record.LineFormatRecord
Get the colour palette index field for the LineFormat record.
getColumn(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getColumn() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getColumn() - Method in class loci.poi.hssf.record.BlankRecord
get the column this cell defines within the row
getColumn() - Method in class loci.poi.hssf.record.BoolErrRecord
 
getColumn() - Method in interface loci.poi.hssf.record.CellValueRecordInterface
get the column this cell defines within the row
getColumn() - Method in class loci.poi.hssf.record.formula.ExpPtg
 
getColumn() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getColumn() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getColumn() - Method in class loci.poi.hssf.record.FormulaRecord
 
getColumn() - Method in class loci.poi.hssf.record.LabelRecord
 
getColumn() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
getColumn() - Method in class loci.poi.hssf.record.NoteRecord
Return the column that contains the comment
getColumn() - Method in class loci.poi.hssf.record.NumberRecord
 
getColumn() - Method in class loci.poi.hssf.record.RKRecord
 
getColumn() - Method in class loci.poi.hssf.usermodel.HSSFComment
Return the column of the cell that contains the comment
getColumn() - Method in class mdbtools.dbengine.sql.FQColumn
 
getColumn(int) - Method in class mdbtools.dbengine.sql.Select
 
getColumn() - Method in class ome.xml.model.Well
 
getColumNames(int) - Method in interface loci.formats.services.MetakitService
 
getColumNames(int) - Method in class loci.formats.services.MetakitServiceImpl
 
getColumnBreaks() - Method in class loci.poi.hssf.model.Sheet
Returns all the column page breaks
getColumnBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Retrieves all the vertical page breaks
getColumnCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg
 
getColumnCount() - Method in class mdbtools.dbengine.sql.Select
 
getColumnCount() - Method in interface mdbtools.dbengine.Table
 
getColumnFrom() - Method in class loci.poi.hssf.util.Region
get the upper left hand corner column number
getColumnName(int) - Method in interface mdbtools.dbengine.Table
 
getColumnNames(String) - Method in interface loci.formats.services.MetakitService
 
getColumnNames(String) - Method in class loci.formats.services.MetakitServiceImpl
 
getColumnNames(int) - Method in class ome.metakit.MetakitReader
Retrieve the name of every column in the table with the given index.
getColumnNames(String) - Method in class ome.metakit.MetakitReader
Retrieve the name of every column in the named table.
getColumnNamingConvention() - Method in class ome.xml.model.Plate
 
getColumnRaw() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getColumnRaw() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getColumns() - Method in class ome.xml.model.Plate
 
getColumnTo() - Method in class loci.poi.hssf.util.Region
get the lower right hand corner column number
getColumnTypes(int) - Method in interface loci.formats.services.MetakitService
 
getColumnTypes(String) - Method in interface loci.formats.services.MetakitService
 
getColumnTypes(int) - Method in class loci.formats.services.MetakitServiceImpl
 
getColumnTypes(String) - Method in class loci.formats.services.MetakitServiceImpl
 
getColumnTypes(int) - Method in class ome.metakit.MetakitReader
Retrieve the type for every column in the table with the given index.
getColumnTypes(String) - Method in class ome.metakit.MetakitReader
Retrieve the type for every column in the named table.
getColumnWidth(short) - Method in class loci.poi.hssf.model.Sheet
get the width of a given column in units of 1/20th of a point width (twips?)
getColumnWidth() - Method in class loci.poi.hssf.record.ColumnInfoRecord
get the columns' width in 1/256 of a character width
getColumnWidth(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet
get the width (in units of 1/256th of a character width )
getColWidth() - Method in class loci.poi.hssf.record.DefaultColWidthRecord
get the default column width
getComment() - Method in class loci.formats.tiff.IFD
Convenience method for obtaining the ImageDescription from this IFD.
getComment() - Method in class loci.formats.tiff.TiffParser
Convenience method for obtaining a stream's first ImageDescription.
getCommentAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getCommentAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getCommentAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getCommentAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getCommentAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getCommentAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getCommentAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getCommentAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getCommentAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getCommentAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getCommentAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getCommentAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getCommentAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getCommentAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getCommentAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getCommentAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getCommentAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getCommentAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getCommentAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getCommentAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getCommentAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getCommentAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getCommentAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getCommentAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getCommentAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getCommentAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getCommentAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getCommentAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getCommentAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getCommentAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata
 
getCommentAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata
 
getCommentAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getCommentAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getComments() - Method in class loci.formats.in.JPEG2000MetadataParser
Retrieves the list of comments stored in the file.
getComments() - Method in class loci.poi.hpsf.SummaryInformation
Returns the comments (or null).
getCompany() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the company (or null).
getCompatibilityList() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
Returns the compatibilty list of this file type box.
getCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Apply forward component transformation associated with the current tile.
getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component, using the 'transfer type' specified in the block given as argument.
getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
Apply inverse component transformation associated with the current tile.
getCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
Returns a block of image data containing the specifed rectangular area, in the specified component, as a copy (see below).
getCompDef(int) - Method in class jj2000.j2k.ModuleSpec
Gets default value of the specified component.
getCompHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the height in pixels of the specified component in the current tile.
getCompImgHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the height in pixels of the specified component in the overall image.
getCompImgHeight(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getCompImgHeight(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the height in pixels of the specified component in the overall image, for the given (component) resolution level.
getCompImgHeight(int) - Method in interface jj2000.j2k.image.ImgData
Returns the height in pixels of the specified component in the overall image.
getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the height in pixels of the specified component in the overall image.
getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the height in pixels of the specified component in the overall image.
getCompImgHeight(int) - Method in class jj2000.j2k.image.input.ImgReader
Returns the height in pixels of the specified component in the overall image.
getCompImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the height in pixels of the specified component in the overall image.
getCompImgHeight(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the height in pixels of the specified component in the overall image, for the given resolution level.
getCompImgHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the height in pixels of the specified component in the overall image, for the given resolution level.
getCompImgWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the width in pixels of the specified component in the overall image.
getCompImgWidth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
Width of the specified tile-component
getCompImgWidth(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the width in pixels of the specified component in the overall image, for the given (component) resolution level.
getCompImgWidth(int) - Method in interface jj2000.j2k.image.ImgData
Returns the width in pixels of the specified component in the overall image.
getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the width in pixels of the specified component in the overall image.
getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the width in pixels of the specified component in the overall image.
getCompImgWidth(int) - Method in class jj2000.j2k.image.input.ImgReader
Returns the width in pixels of the specified component in the overall image.
getCompImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the width in pixels of the specified component in the overall image.
getCompImgWidth(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the width in pixels of the specified component in the overall image, for the given resolution level.
getCompImgWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the width in pixels of the specified component in the overall image, for the given resolution level.
getComplexData() - Method in class loci.poi.ddf.EscherComplexProperty
Get the complex data value.
getComponent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
 
getComponent(int) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath
get the specified component
getComponentAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
 
getComponentTransformation() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets componentTransformation.
getComponentTransformation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets componentTransformation
getComponentType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
 
getComposite() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getComposite() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getCompressedSize() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getCompressedSize() - Method in class loci.poi.ddf.EscherPictBlip
 
getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.BoundSheetRecord
get whether or not to interperate the Sheetname as compressed unicode (8/16 bit) (This is undocumented but can be found as Q187919 on the Microsoft(tm) Support site)
getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.NameRecord
gets the name compressed Unicode flag
getCompression() - Method in enum loci.formats.codec.CompressionType
Returns the compression.
getCompression(String) - Method in class loci.formats.FormatReader
Retrieves an Compression enumeration value for the given String.
getCompression() - Method in class loci.formats.FormatWriter
 
getCompression() - Method in interface loci.formats.IFormatWriter
Gets the current compression type.
getCompression() - Method in class loci.formats.ImageWriter
 
getCompression() - Method in class loci.formats.tiff.IFD
Retrieves the image's compression type (TIFF tag Compression) from this IFD.
getCompression() - Method in class loci.formats.WriterWrapper
 
getCompression() - Method in class ome.xml.model.BinData
 
getCompression() - Method in class ome.xml.model.External
 
getCompressionCodecOptions(IFD) - Method in enum loci.formats.tiff.TiffCompression
Creates a set of codec options for compression.
getCompressionCodecOptions(IFD, CodecOptions) - Method in enum loci.formats.tiff.TiffCompression
Creates a set of codec options for compression.
getCompressionFlag() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Is the contents of the blip compressed?
getCompressionTagValue() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
Retrieve the value to be assigned to the TIFF Compression tag in the TIFF image metadata.
getCompressionType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
Retrieve the name of the compression type supported by this compressor.
getCompressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Returns the compression type.
getCompressionTypes() - Method in class loci.formats.FormatWriter
 
getCompressionTypes() - Method in interface loci.formats.IFormatWriter
Gets the available compression types.
getCompressionTypes() - Method in class loci.formats.ImageWriter
 
getCompressionTypes() - Method in class loci.formats.WriterWrapper
 
getCompSubsX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the component subsampling factor in the horizontal direction, for the specified component.
getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the component subsampling factor in the horizontal direction, for the specified component.
getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the component sub-sampling factor, with respect to the reference grid, along the horizontal direction for the specified component.
getCompSubsX(int) - Method in interface jj2000.j2k.image.ImgData
Returns the component subsampling factor in the horizontal direction, for the specified component.
getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the component subsampling factor in the horizontal direction, for the specified component.
getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the component subsampling factor in the horizontal direction, for the specified component.
getCompSubsX(int) - Method in class jj2000.j2k.image.input.ImgReader
Returns the component subsampling factor in the horizontal direction, for the specified component.
getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the component subsampling factor in the horizontal direction, for the specified component.
getCompSubsX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the component subsampling factor in the horizontal direction, for the specified component.
getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the component subsampling factor in the horizontal direction, for the specified component.
getCompSubsY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the component subsampling factor in the vertical direction, for the specified component.
getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the component subsampling factor in the vertical direction, for the specified component.
getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the component sub-sampling factor, with respect to the reference grid, along the vertical direction for the specified component.
getCompSubsY(int) - Method in interface jj2000.j2k.image.ImgData
Returns the component subsampling factor in the vertical direction, for the specified component.
getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the component subsampling factor in the vertical direction, for the specified component.
getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the component subsampling factor in the vertical direction, for the specified component.
getCompSubsY(int) - Method in class jj2000.j2k.image.input.ImgReader
Returns the component subsampling factor in the vertical direction, for the specified component.
getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the component subsampling factor in the vertical direction, for the specified component.
getCompSubsY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the component subsampling factor in the vertical direction, for the specified component.
getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the component subsampling factor in the vertical direction, for the specified component.
getCompULX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the horizontal coordinate of the upper-left corner of the active tile, with respect to the canvas origin, in the component coordinates, for the specified component.
getCompULX(int) - Method in interface jj2000.j2k.image.ImgData
Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.
getCompULX(int) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.
getCompULX(int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.
getCompULX(int) - Method in class jj2000.j2k.image.input.ImgReader
Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.
getCompULX(int) - Method in class jj2000.j2k.image.Tiler
Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.
getCompULX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.
getCompULY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the vertical coordinate of the upper-left corner of the active tile, with respect to the canvas origin, in the component coordinates, for the specified component.
getCompULY(int) - Method in interface jj2000.j2k.image.ImgData
Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.
getCompULY(int) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.
getCompULY(int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.
getCompULY(int) - Method in class jj2000.j2k.image.input.ImgReader
Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.
getCompULY(int) - Method in class jj2000.j2k.image.Tiler
Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.
getCompULY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.
getCompWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the width in pixels of the specified component in the current tile.
getConcatenateInfo() - Method in class loci.plugins.in.ImporterOptions
 
getConfig(String) - Method in class loci.formats.in.PrairieMetadata
Gets the value of the given configuration Key.
getConfig() - Method in class loci.formats.in.PrairieMetadata
Gets a read-only map of configuration key/value pairs.
getContent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Returns the box content in byte array.
getContents() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources
 
getContrastMethod(String) - Method in class loci.formats.FormatReader
Retrieves an ContrastMethod enumeration value for the given String.
getContrastMethod() - Method in class ome.xml.model.Channel
 
getCopies() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getCopies() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the number of copies.
getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.COD
 
getCopy(int) - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a copy of this object
getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getCopy() - Method in class jj2000.j2k.decoder.DecoderSpecs
Returns a copy of the current object.
getCopy() - Method in class jj2000.j2k.ModuleSpec
 
getCoreIndex() - Method in class loci.formats.FileStitcher
 
getCoreIndex() - Method in class loci.formats.FormatReader
 
getCoreIndex() - Method in interface loci.formats.IFormatReader
Return the index into CoreMetadata of the current resolution/series.
getCoreIndex() - Method in class loci.formats.ImageReader
 
getCoreIndex() - Method in class loci.formats.ReaderWrapper
 
getCoreMetadata() - Method in class loci.formats.DimensionSwapper
Deprecated. 
getCoreMetadata() - Method in class loci.formats.FileStitcher
Deprecated. 
getCoreMetadata() - Method in class loci.formats.FormatReader
Deprecated. 
getCoreMetadata() - Method in interface loci.formats.IFormatReader
Deprecated.
Use #getCoreMetadataList instead.
getCoreMetadata() - Method in class loci.formats.ImageReader
Deprecated. 
getCoreMetadata() - Method in class loci.formats.ReaderWrapper
Deprecated. 
getCoreMetadataList() - Method in class loci.formats.DimensionSwapper
 
getCoreMetadataList() - Method in class loci.formats.FileStitcher
 
getCoreMetadataList() - Method in class loci.formats.FormatReader
 
getCoreMetadataList() - Method in interface loci.formats.IFormatReader
Obtains the core metadata values for the current file.
getCoreMetadataList() - Method in class loci.formats.ImageReader
 
getCoreMetadataList() - Method in class loci.formats.in.LeicaHandler
 
getCoreMetadataList() - Method in class loci.formats.in.ND2Handler
 
getCoreMetadataList() - Method in class loci.formats.ReaderWrapper
 
getCorrection(String) - Method in class loci.formats.FormatReader
Retrieves an Correction enumeration value for the given String.
getCorrection() - Method in class loci.formats.in.ND2Handler
 
getCorrection() - Method in class ome.xml.model.Objective
 
getCorrectionCollar() - Method in class ome.xml.model.ObjectiveSettings
 
getCount() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns the number of data items present in the field.
getCount() - Method in class loci.formats.FilePattern
 
getCount() - Method in class loci.poi.hssf.record.FnGroupCountRecord
get the number of built-in functions
getCreateDateTime() - Method in class loci.poi.hpsf.SummaryInformation
Returns the creation time (or null).
getCreator() - Method in class ome.xml.model.OME
 
getCropInfo() - Method in class loci.plugins.in.ImporterOptions
 
getCropRegion(int) - Method in class loci.plugins.in.ImporterOptions
 
getCropRegion(int) - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getCrossingPoint() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Get the crossing point field for the AxisOptions record.
getCrossingPoint() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
Get the crossing point field for the CategorySeriesAxis record.
getCStep(int) - Method in class loci.plugins.in.ImporterOptions
 
getCStep(int) - Method in class loci.plugins.in.ImportProcess
 
getCurrentColorModel() - Method in class loci.plugins.util.RecordedImageProcessor
 
getCurrentCountry() - Method in class loci.poi.hssf.record.CountryRecord
gets the current country
getCurrentFile() - Method in class loci.formats.FormatReader
 
getCurrentFile() - Method in interface loci.formats.IFormatReader
Returns the current file.
getCurrentFile() - Method in class loci.formats.ImageReader
 
getCurrentFile() - Method in class loci.formats.ReaderWrapper
 
getCurrentFile() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getCurrentFile(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getCurrentPos() - Method in class loci.formats.cache.Cache
Gets the current dimensional position.
getCustomColor(int, int) - Method in class loci.plugins.in.ImporterOptions
 
getCustomColorKey(int, int) - Method in class loci.plugins.in.ImporterOptions
 
getCustomMenuLength() - Method in class loci.poi.hssf.record.NameRecord
gets the custom menu length
getCustomMenuText() - Method in class loci.poi.hssf.record.NameRecord
get the custom menu text
getCustomPalette() - Method in class loci.poi.hssf.model.Workbook
Returns the custom palette in use for this workbook; if a custom palette record does not exist, then it is created.
getCustomPalette() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
 
getCustomProperties() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Gets the custom properties.
getCutIn(Integer) - Static method in class loci.formats.FormatTools
 
getCutIn() - Method in class ome.xml.model.TransmittanceRange
 
getCutInTolerance() - Method in class ome.xml.model.TransmittanceRange
 
getCutOut(Integer) - Static method in class loci.formats.FormatTools
 
getCutOut() - Method in class ome.xml.model.TransmittanceRange
 
getCutOutTolerance() - Method in class ome.xml.model.TransmittanceRange
 
getCycle() - Method in class loci.formats.in.PrairieMetadata.Sequence
Gets the cycle associated with this Sequence.
getCycleCount() - Method in class loci.formats.in.PrairieMetadata
Gets the number of recorded cycles.
getCycleMax() - Method in class loci.formats.in.PrairieMetadata
Gets the maximum cycle value.
getCycleMin() - Method in class loci.formats.in.PrairieMetadata
Gets the minimum cycle value.
getData() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns a reference to the data object associated with the field.
getData() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the entire image in a single Raster.
getData(Rectangle) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns an arbitrary rectangular region of the RenderedImage in a Raster.
getData() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
Returns the UUID data of this box.
getData() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getData(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getData() - Method in class jj2000.j2k.image.DataBlk
Returns the array containing the data, or null if there is no data.
getData() - Method in class jj2000.j2k.image.DataBlkFloat
Returns the array containing the data, or null if there is no data array.
getData() - Method in class jj2000.j2k.image.DataBlkInt
Returns the array containing the data, or null if there is no data array.
getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData
Returns the array containing the data, or null if there is no data.
getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
Returns the array containing the data, or null if there is no data array.
getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
Returns the array containing the data, or null if there is no data array.
getData() - Method in class loci.formats.gui.SignedByteBuffer
 
getData(int) - Method in class loci.formats.gui.SignedByteBuffer
 
getData() - Method in class loci.formats.gui.SignedShortBuffer
 
getData(int) - Method in class loci.formats.gui.SignedShortBuffer
 
getData() - Method in class loci.formats.gui.UnsignedIntBuffer
 
getData(int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getData() - Method in class loci.poi.ddf.EscherBlipWMFRecord
The BLIP data
getData() - Method in class loci.poi.ddf.EscherTextboxRecord
Returns any extra data associated with this record.
getData() - Method in class loci.poi.ddf.UnknownEscherRecord
 
getData() - Method in class loci.poi.hssf.record.ContinueRecord
get the data for continuation
getData() - Method in class loci.poi.hssf.record.DrawingRecord
 
getData() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getData() - Method in class loci.poi.hssf.usermodel.HSSFPictureData
Gets the picture data.
getData() - Method in interface loci.poi.poifs.storage.ListManagedBlock
Get the data from the block
getData() - Method in class loci.poi.poifs.storage.RawDataBlock
Get the data from the block
getData() - Method in class loci.poi.poifs.storage.SmallDocumentBlock
Get the data from the block
getData() - Method in interface mdbtools.dbengine.Table
 
getDataElements(int, Object) - Method in class loci.formats.gui.Index16ColorModel
 
getDataElements(int, Object) - Method in class loci.formats.gui.SignedColorModel
 
getDataElements(int, Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getDataFloat() - Method in class jj2000.j2k.image.DataBlkFloat
Returns the array containing the data, or null if there is no data array.
getDataFloat() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
Returns the array containing the data, or null if there is no data array.
getDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the index of the format
getDataFormatString(Workbook) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
Get the contents of the format string, by looking up the DataFormat against the supplied workbook
getDataInt() - Method in class jj2000.j2k.image.DataBlkInt
Returns the array containing the data, or null if there is no data array.
getDataInt() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
Returns the array containing the data, or null if there is no data array.
getDataLabelPlacement() - Method in class loci.poi.hssf.record.TextRecord
 
getDataset(int) - Method in class ome.xml.model.OME
 
getDatasetAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetCount() - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetCount() - Method in class loci.formats.meta.DummyMetadata
 
getDatasetCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetExperimenterGroupRef(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetExperimenterGroupRef(int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetExperimenterGroupRef(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetExperimenterGroupRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetExperimenterRef(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetExperimenterRef(int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetExperimenterRef(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetExperimenterRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetID(int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetImageRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetImageRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetImageRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetImageRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetImageRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetImageRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetImageRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetImageRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetName(int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDatasetRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getDatasetRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDatasetRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDatasetStructureDescription() - Method in class loci.formats.FormatReader
 
getDatasetStructureDescription() - Method in interface loci.formats.IFormatReader
Returns a short description of the dataset structure.
getDatasetStructureDescription() - Method in class loci.formats.ImageReader
 
getDatasetStructureDescription() - Method in class loci.formats.ReaderWrapper
 
getDataType() - Method in class jj2000.j2k.image.DataBlk
Returns the data type of the DataBlk object, as defined in this class.
getDataType() - Method in class jj2000.j2k.image.DataBlkFloat
Returns the identifier of this data type, TYPE_FLOAT, as defined in DataBlk.
getDataType() - Method in class jj2000.j2k.image.DataBlkInt
Returns the identifier of this data type, TYPE_INT, as defined in DataBlk.
getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_FLOAT for this class.
getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_INT for this class.
getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData
Returns the data type of the CBlkWTData object, as defined in the DataBlk class.
getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
Returns the identifier of this data type, TYPE_FLOAT, as defined in DataBlk.
getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
Returns the data type of this object, always DataBlk.TYPE_INT.
getDataType(int, int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc
Return the data type of this CBlkWTDataSrc for the given component in the current tile.
getDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Return the data type of this CBlkWTDataSrc.
getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat
Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_FLOAT for this class.
getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt
Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_INT for this class.
getDataType() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the type of data on which this filter works, as defined in the DataBlk interface.
getDataTypes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Returns a bit mask indicating the set of data types that may be used to store the data associated with the tag.
getDate() - Method in class loci.formats.in.MetamorphHandler
 
getDate() - Method in class loci.formats.in.ND2Handler
 
getDate() - Method in class loci.formats.in.PrairieMetadata
Gets the date of the acquisition.
getDate() - Method in class loci.tests.testng.Configuration
 
getDateCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell
get the value of the cell as a date.
getDatestamp() - Method in class loci.formats.in.SVSReader
 
getDbcellAt(int) - Method in class loci.poi.hssf.record.IndexRecord
 
getDebugInfo() - Method in class loci.poi.hssf.record.UnicodeString
return a character representation of the fields of this record
getDecoderSpecs() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Return the DecoderSpecs instance filled when reading the headers
getDecodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam
Gets decodingRate.
getDecomp(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT
Returns the wavelet tree decomposition.
getDecomp(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the wavelet tree decomposition.
getDecompLevels(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT
Returns the number of decomposition levels that are applied to obtain the LL band, in the specified tile-component.
getDecompLevels(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the number of decomposition levels that are applied to the LL band, in the specified tile-component.
getDecompositionLevel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets decompositionLevel
getDecompType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec
Returns the decomposition type to be used in component 'n' and tile 't'.
getDecSpecType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec
Returns the type of specification for the decomposition in the specified component and tile.
getDefault() - Method in class jj2000.j2k.ModuleSpec
Gets default value for this module.
getDefault() - Method in class loci.plugins.prefs.BooleanOption
Gets the default value of the option.
getDefault() - Method in class loci.plugins.prefs.DoubleOption
Gets the default value of the option.
getDefault() - Method in class loci.plugins.prefs.StringOption
Gets the default value of the option.
getDefaultColorModel() - Method in class loci.plugins.util.RecordedImageProcessor
 
getDefaultColumnWidth() - Method in class loci.poi.hssf.model.Sheet
get the default column width for the sheet (if the columns do not define their own width)
getDefaultColumnWidth() - Method in class loci.poi.hssf.usermodel.HSSFSheet
get the default column width for the sheet (if the columns do not define their own width) in characters
getDefaultConfiguration() - Static method in class loci.formats.gui.AWTImageTools
Gets the default graphics configuration for the environment.
getDefaultCountry() - Method in class loci.poi.hssf.record.CountryRecord
gets the default country
getDefaultCustomColor(int) - Method in class loci.plugins.in.ImporterOptions
 
getDefaultHeader() - Method in class loci.poi.hssf.record.WindowTwoRecord
get whether the window should display a default header
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AddPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ArrayPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.BoolPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ErrPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ExpPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg
Get the default operands class value
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.IntPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.LessThanPtg
Get the default operands class value
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MissingArgPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NamePtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NameXPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NumberPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.OperationPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.PercentPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ptg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.StringPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnknownPtg
 
getDefaultOptions() - Static method in class loci.formats.codec.CodecOptions
Return CodecOptions with reasonable default values.
getDefaultOptions() - Static method in class loci.formats.codec.JPEG2000CodecOptions
Return JPEG2000CodecOptions with reasonable default values.
getDefaultOptions(CodecOptions) - Static method in class loci.formats.codec.JPEG2000CodecOptions
Return JPEG2000CodecOptions using the given CodecOptions as the default.
getDefaultReaderClasses() - Static method in class loci.formats.ImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet
get the default row height for the sheet (if the rows do not define their own height)
getDefaultRowHeight() - Method in class loci.poi.hssf.usermodel.HSSFSheet
get the default row height for the sheet (if the rows do not define their own height) in twips (1/20 of a point)
getDefaultRowHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFSheet
get the default row height for the sheet (if the rows do not define their own height) in points.
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
 
getDefaultValue(String) - Method in class loci.plugins.prefs.OptionsList
Gets the default value of the string option with the given key.
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
getDefaultWriterClasses() - Static method in class loci.formats.ImageWriter
 
getDefinitionLength() - Method in class loci.poi.hssf.record.NameRecord
get the definition length
getDelMenuCount() - Method in class loci.poi.hssf.record.MMSRecord
get number of add del options (should be 0)
getDeltaT() - Method in class ome.xml.model.Plane
 
getDenominator() - Method in class loci.formats.tiff.TiffRational
Gets this number's denominator.
getDenominator() - Method in class loci.poi.hssf.record.SCLRecord
Get the denominator field for the SCL record.
getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.DequantizerParams
Returns the type of the dequantizer for which the parameters are.
getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams
Returns the type of the dequantizer for which the parameters are.
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
 
getDescription() - Method in class loci.formats.gui.ComboFileFilter
Returns the filter's description.
getDescription() - Method in class loci.formats.gui.ExtensionFileFilter
Gets the filter's description.
getDescription() - Method in class loci.formats.gui.FormatFileFilter
Gets the filter's description.
getDescription() - Method in class loci.formats.gui.NoExtensionFileFilter
Gets the filter's description.
getDescription() - Method in class loci.poi.ddf.EscherPropertyMetaData
 
getDescription() - Method in class ome.xml.model.Annotation
 
getDescription() - Method in class ome.xml.model.Dataset
 
getDescription() - Method in class ome.xml.model.Experiment
 
getDescription() - Method in class ome.xml.model.ExperimenterGroup
 
getDescription() - Method in class ome.xml.model.Image
 
getDescription() - Method in class ome.xml.model.MicrobeamManipulation
 
getDescription() - Method in class ome.xml.model.Plate
 
getDescription() - Method in class ome.xml.model.PlateAcquisition
 
getDescription() - Method in class ome.xml.model.Project
 
getDescription() - Method in class ome.xml.model.Reagent
 
getDescription() - Method in class ome.xml.model.ROI
 
getDescription() - Method in class ome.xml.model.Screen
 
getDescriptionText() - Method in class loci.poi.hssf.record.NameRecord
gets the description text
getDescriptionTextLength() - Method in class loci.poi.hssf.record.NameRecord
gets the description text length
getDeser() - Method in class loci.formats.Memoizer
Returns a configured Kryo instance.
getDestination(ImageReadParam, Iterator, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getDestinationRegion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getDestinationType(ImageReadParam, Iterator) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Gets the destination image type.
getDetector(int) - Method in class loci.tests.testng.Configuration
 
getDetector() - Method in class ome.xml.model.DetectorSettings
 
getDetector(int) - Method in class ome.xml.model.Instrument
 
getDetectorAmplificationGain(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorAmplificationGain(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorAmplificationGain(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorAmplificationGain(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorGain(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorGain(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorGain(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorGain(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorModel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorModel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorOffset(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorOffset(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorOffset(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorOffset(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorSettings() - Method in class ome.xml.model.Channel
 
getDetectorSettingsBinning(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorSettingsBinning(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorSettingsBinning(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorSettingsBinning(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorSettingsGain(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorSettingsGain(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorSettingsGain(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorSettingsGain(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorSettingsID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorSettingsID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorSettingsID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorSettingsID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorSettingsIntegration(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorSettingsIntegration(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorSettingsIntegration(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorSettingsIntegration(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorSettingsOffset(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorSettingsOffset(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorSettingsOffset(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorSettingsOffset(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorSettingsReadOutRate(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorSettingsReadOutRate(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorSettingsReadOutRate(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorSettingsReadOutRate(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorSettingsVoltage(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorSettingsVoltage(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorSettingsVoltage(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorSettingsVoltage(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorSettingsZoom(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorSettingsZoom(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorSettingsZoom(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorSettingsZoom(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorType(String) - Method in class loci.formats.FormatReader
Retrieves an DetectorType enumeration value for the given String.
getDetectorType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorVoltage(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorVoltage(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorVoltage(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorVoltage(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDetectorZoom(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDetectorZoom(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDetectorZoom(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDetectorZoom(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getDgg() - Method in class loci.poi.hssf.model.DrawingManager
 
getDgg() - Method in class loci.poi.hssf.model.DrawingManager2
 
getDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
Not sure what this is for (maybe fill lines?) 1 = down, 2 = up, 3 = both, 0 for none..
getDialog() - Method in class loci.poi.hssf.record.WSBoolRecord
get whether sheet is a dialog sheet or not
getDialog() - Method in class loci.poi.hssf.usermodel.HSSFSheet
get whether sheet is a dialog sheet or not
getDichroic(int) - Method in class ome.xml.model.Instrument
 
getDichroicCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDichroicCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getDichroicCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDichroicCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDichroicID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDichroicID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDichroicID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDichroicID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDichroicLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDichroicLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDichroicLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDichroicLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDichroicManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDichroicManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDichroicManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDichroicManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDichroicModel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDichroicModel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDichroicModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDichroicModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDichroicSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDichroicSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDichroicSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDichroicSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDictionary() - Method in class loci.poi.hpsf.Section
Gets the section's dictionary.
getDigitPart(String) - Method in class loci.poi.hssf.util.RangeAddress
 
getDim() - Method in class loci.poi.hssf.util.AreaReference
return the dimensions of this area
getDimension(String) - Method in interface loci.formats.services.NetCDFService
Retrieves the length of a dimension.
getDimension(String) - Method in class loci.formats.services.NetCDFServiceImpl
 
getDimensionOrder() - Method in class loci.formats.ChannelMerger
 
getDimensionOrder() - Method in class loci.formats.ChannelSeparator
 
getDimensionOrder() - Method in class loci.formats.DimensionSwapper
 
getDimensionOrder() - Method in class loci.formats.FileStitcher
 
getDimensionOrder() - Method in class loci.formats.FormatReader
 
getDimensionOrder(String) - Method in class loci.formats.FormatReader
Retrieves an DimensionOrder enumeration value for the given String.
getDimensionOrder() - Method in interface loci.formats.IFormatReader
Gets a five-character string representing the dimension order in which planes will be returned.
getDimensionOrder() - Method in class loci.formats.ImageReader
 
getDimensionOrder() - Method in class loci.formats.ReaderWrapper
 
getDimensionOrder(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getDimensionOrder() - Method in class loci.tests.testng.Configuration
 
getDimensionOrder() - Method in class ome.xml.model.Pixels
 
getDimensionSwapper() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getDimsLoc() - Method in class loci.poi.hssf.model.Sheet
get the location of the DimensionsRecord (which is the last record before the value section)
getDirectory() - Method in class loci.poi.hssf.usermodel.HSSFObjectData
Gets the object data.
getDisplayedTab() - Method in class loci.poi.hssf.record.WindowOneRecord
get the displayed tab number
getDisplayedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
sets the first tab that is displayed in the list of tabs in excel.
getDisplayFormulas() - Method in class loci.poi.hssf.record.WindowTwoRecord
get whether the window should display formulas
getDisplayGridlines() - Method in class loci.poi.hssf.record.WindowTwoRecord
get whether the window should display gridlines
getDisplayGuts() - Method in class loci.poi.hssf.record.WindowTwoRecord
get whether the outline symbols are displaed
getDisplayGuts() - Method in class loci.poi.hssf.record.WSBoolRecord
get whether to display the guts or not
getDisplayGuts() - Method in class loci.poi.hssf.usermodel.HSSFSheet
get whether to display the guts or not
getDisplayHorizontalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord
get whether to display the horizontal scrollbar or not
getDisplayMode() - Method in class loci.poi.hssf.record.TextRecord
Get the display mode field for the Text record.
getDisplayRowColHeadings() - Method in class loci.poi.hssf.record.WindowTwoRecord
get whether the window should display row and column headings
getDisplayTabs() - Method in class loci.poi.hssf.record.WindowOneRecord
get whether to display the tabs or not
getDisplayVerticalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord
get whether to display the vertical scrollbar or not
getDisplayZeros() - Method in class loci.poi.hssf.record.WindowTwoRecord
get whether the window should display zero values
getDocparts() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the doc parts (or null) when this method is implemented.
getDocument() - Method in class loci.formats.gui.XMLWindow
Gets the XML document currently being displayed within the window.
getDocument() - Method in class loci.poi.poifs.filesystem.DocumentNode
get the POIFSDocument
getDocument() - Method in class loci.poi.poifs.property.DocumentProperty
get the POIFSDocument
getDocumentBytes(String) - Method in interface loci.formats.services.POIService
Retrieve all of the raw bytes that correspond to the given file name.
getDocumentBytes(String, int) - Method in interface loci.formats.services.POIService
Retrieve at most 'length' bytes that correspond to the given file name.
getDocumentBytes(String) - Method in class loci.formats.services.POIServiceImpl
 
getDocumentBytes(String, int) - Method in class loci.formats.services.POIServiceImpl
 
getDocumentList() - Method in interface loci.formats.services.POIService
Retrieve a list of all files in the current POI file system.
getDocumentList() - Method in class loci.formats.services.POIServiceImpl
 
getDocumentStream(String) - Method in interface loci.formats.services.POIService
Retrieve a RandomAccessInputStream corresponding to the given file name.
getDocumentStream(String) - Method in class loci.formats.services.POIServiceImpl
 
getDocumentSummaryInformation() - Method in class loci.poi.POIDocument
Fetch the Document Summary Information of the document
getDocumentSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap
Returns the Document Summary Information properties singleton.
getDomains() - Method in class loci.formats.FormatReader
 
getDomains() - Method in interface loci.formats.IFormatReader
Returns the list of domains represented by the current file.
getDomains() - Method in class loci.formats.ImageReader
 
getDomains() - Method in class loci.formats.in.CellomicsReader
 
getDomains() - Method in class loci.formats.in.ICSReader
 
getDomains() - Method in class loci.formats.in.MetamorphTiffReader
 
getDomains() - Method in class loci.formats.in.NiftiReader
 
getDomains() - Method in class loci.formats.in.OMETiffReader
 
getDomains() - Method in class loci.formats.in.OMEXMLReader
 
getDomains() - Method in class loci.formats.ReaderWrapper
 
getDouble(byte[], int) - Static method in class loci.poi.util.LittleEndian
get a double value from a byte array, reads it in little endian format then converts the resulting revolting IEEE 754 (curse them) floating point number to a happy java double
getDouble(byte[]) - Static method in class loci.poi.util.LittleEndian
get a double value from the beginning of a byte array
getDoubleAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getDoubleAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDoubleAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getDoubleAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDoubleAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDoubleAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getDoubleAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getDoubleAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDoubleAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDoubleAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDoubleAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getDoubleAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDoubleAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDoubleAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getDoubleAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getDoubleAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getDoubleAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDoubleAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDoubleAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getDoubleAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDoubleAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDoubleAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDoubleAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getDoubleAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDoubleAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDoubleAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDoubleAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getDoubleAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDoubleAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDoubleAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata
 
getDoubleAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata
 
getDoubleAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getDoubleAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getDoubles(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of doubles, one per channel.
getDoubles(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of doubles, one per channel.
getDoubles(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of doubles, one per channel.
getDraft() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getDraft() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the draft mode.
getDrawAreaHeight() - Method in class loci.poi.hssf.usermodel.HSSFPolygon
 
getDrawAreaWidth() - Method in class loci.poi.hssf.usermodel.HSSFPolygon
 
getDrawingGroupId() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster
 
getDrawingGroupId() - Method in class loci.poi.ddf.EscherDgRecord
Gets the drawing group id for this record.
getDrawingManager() - Method in class loci.poi.hssf.model.Workbook
 
getDrawingsSaved() - Method in class loci.poi.ddf.EscherDggRecord
 
getDsf() - Method in class loci.poi.hssf.record.DSFRecord
get the DSF flag
getDT(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getDX(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getDx1() - Method in class loci.poi.ddf.EscherChildAnchorRecord
Retrieves offset within the parent coordinate space for the top left point.
getDx1() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The x offset within the top-left cell.
getDx1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
getDx2() - Method in class loci.poi.ddf.EscherChildAnchorRecord
Retrieves offset within the parent coordinate space for the bottom right point.
getDx2() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The x offset withing the cell for the bottom-right corner of this shape.
getDx2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
getDY(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getDy1() - Method in class loci.poi.ddf.EscherChildAnchorRecord
Gets offset within the parent coordinate space for the top left point.
getDy1() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The y offset within the top-left corner of the current shape.
getDy1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
getDy2() - Method in class loci.poi.ddf.EscherChildAnchorRecord
Gets the offset within the parent coordinate space for the bottom right point.
getDy2() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The y offset withing the cell for the bottom-right corner of this shape.
getDy2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
getDZ(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getEditTime() - Method in class loci.poi.hpsf.SummaryInformation
Returns the total time spent in editing the document (or 0).
getEffectiveSizeC() - Method in class loci.formats.FormatReader
 
getEffectiveSizeC() - Method in interface loci.formats.IFormatReader
Gets the effective size of the C dimension, guaranteeing that getEffectiveSizeC() * getSizeZ() * getSizeT() == getImageCount() regardless of the result of isRGB().
getEffectiveSizeC() - Method in class loci.formats.ImageReader
 
getEffectiveSizeC() - Method in class loci.formats.ReaderWrapper
 
getEffectiveSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getElem(int) - Method in class loci.formats.gui.SignedByteBuffer
 
getElem(int, int) - Method in class loci.formats.gui.SignedByteBuffer
 
getElem(int, int) - Method in class loci.formats.gui.SignedShortBuffer
 
getElem(int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElem(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElemDouble(int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElemDouble(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElement(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getElement(int) - Method in class loci.poi.ddf.EscherArrayProperty
 
getElementDescription(String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getElementMaxChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getElementMinChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.
getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.
getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.
getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.
getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.
getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox
This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.
getElements() - Method in class loci.formats.FilePattern
 
getElements() - Method in class loci.formats.FilePatternBlock
 
getElementSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
getElemFloat(int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElemFloat(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getEllipseFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseLocked(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseRadiusX(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseRadiusX(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseRadiusX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseRadiusX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseRadiusY(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseRadiusY(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseRadiusY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseRadiusY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseText(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseText(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseTheC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseTheT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseTransform(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseVisible(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseX(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseX(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEllipseY(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getEllipseY(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getEllipseY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getEllipseY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getEmail() - Method in class ome.xml.model.Experimenter
 
getEmission() - Method in class loci.formats.in.SVSReader
 
getEmissionWavelength(Integer) - Static method in class loci.formats.FormatTools
 
getEmissionWavelength(int) - Method in class loci.tests.testng.Configuration
 
getEmissionWavelength() - Method in class ome.xml.model.Channel
 
getEmissionWavelengths() - Method in class loci.formats.in.ND2Handler
 
getEmpty() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
Get the empty field for the SheetProperties record.
getEncoding() - Method in class loci.poi.hssf.usermodel.HSSFCell
Deprecated.
As of 3-Jan-06 POI now automatically handles Unicode without forcing the encoding.
getEncodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets encodingRate.
getEncodingRate() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets encodingRate
getEndRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
Returns the physical row number of the end row in a block
getEndTime() - Method in class ome.xml.model.PlateAcquisition
 
getEntity() - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.BinningEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler
 
getEntity() - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler
Retrieve the entity corresponding to this handler.
getEntity() - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.MediumEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.PulseEnumHandler
 
getEntries() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
get an iterator of the Entry instances contained directly in this instance (in other words, children only; no grandchildren etc.)
getEntries() - Method in class loci.poi.poifs.filesystem.DirectoryNode
get an iterator of the Entry instances contained directly in this instance (in other words, children only; no grandchildren etc.)
getEntry(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
get a specified Entry by name
getEntry(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode
get a specified Entry by name
getEntryCount() - Method in class loci.common.ZipHandle
Returns the number of entries.
getEntryCount() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
find out how many Entry instances are contained directly within this DirectoryEntry
getEntryCount() - Method in class loci.poi.poifs.filesystem.DirectoryNode
find out how many Entry instances are contained directly within this DirectoryEntry
getEntryCount() - Method in class ome.scifio.io.ZipHandle
Returns the number of entries.
getEntryName() - Method in class loci.common.ZipHandle
Get the name of the backing Zip entry.
getEntryName() - Method in class ome.scifio.io.ZipHandle
Get the name of the backing Zip entry.
getEnumeratedColorSpace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
Returns the enumerated color space.
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.BinningEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler
 
getEnumeration(String) - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler
Attempt to find an enumeration from a list of enumeration values.
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MediumEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PulseEnumHandler
 
getEofLoc() - Method in class loci.poi.hssf.model.Sheet
 
getEPH() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets EPH.
getEPH() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets EPH
getEqualsToIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord
 
getEquation() - Method in class mdbtools.dbengine.sql.Join
 
getErrorCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell
get the value of the cell as an error code.
getErrorCount() - Method in class loci.common.xml.ValidationErrorHandler
 
getErrorCount() - Method in class ome.scifio.xml.ValidationErrorHandler
 
getErrorMessage() - Method in class loci.formats.FilePattern
Gets the file pattern error message, if any.
getErrorValue() - Method in class loci.poi.hssf.record.BoolErrRecord
get the error value for the cell
getEscherProperties() - Method in class loci.poi.ddf.EscherOptRecord
The list of properties stored by this record.
getEscherProperty(int) - Method in class loci.poi.ddf.EscherOptRecord
The list of properties stored by this record.
getEscherRecord(int) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getEscherTextbox() - Method in class loci.poi.hssf.model.TextboxShape
 
getEvent() - Method in class loci.common.StatusEvent
 
getExcelDate(Date) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil
Given a Date, converts it into a double representing its internal Excel representation, which is the number of days since 1/1/1900.
getExcitation() - Method in class loci.formats.in.SVSReader
 
getExcitationWavelength(Integer) - Static method in class loci.formats.FormatTools
 
getExcitationWavelength(int) - Method in class loci.tests.testng.Configuration
 
getExcitationWavelength() - Method in class ome.xml.model.Channel
 
getExcitationWavelengths() - Method in class loci.formats.in.ND2Handler
 
getExFormatAt(int) - Method in class loci.poi.hssf.model.Workbook
gets the ExtendedFormatRecord at the given 0-based index
getExifIFDs() - Method in class loci.formats.tiff.TiffParser
Returns EXIF IFDs.
getExifTagName(int) - Static method in class loci.formats.in.BaseTiffReader
 
getExperiment() - Method in class ome.xml.model.MicrobeamManipulation
 
getExperiment(int) - Method in class ome.xml.model.OME
 
getExperimentCount() - Method in class loci.formats.meta.AggregateMetadata
 
getExperimentCount() - Method in class loci.formats.meta.DummyMetadata
 
getExperimentCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimentCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimentDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimentDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimentDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimentDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenter(int) - Method in class ome.xml.model.OME
 
getExperimenterAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterCount() - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterCount() - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterEmail(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterEmail(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterEmail(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterEmail(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterFirstName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterFirstName(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterFirstName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterFirstName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterGroup(int) - Method in class ome.xml.model.OME
 
getExperimenterGroupAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterGroupAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterGroupAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterGroupAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterGroupAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterGroupAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterGroupAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterGroupAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterGroupCount() - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterGroupCount() - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterGroupCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterGroupCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterGroupDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterGroupDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterGroupDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterGroupDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterGroupExperimenterRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterGroupExperimenterRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterGroupExperimenterRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterGroupExperimenterRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterGroupExperimenterRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterGroupExperimenterRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterGroupExperimenterRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterGroupExperimenterRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterGroupID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterGroupID(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterGroupID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterGroupID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterGroupLeader(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterGroupLeader(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterGroupLeader(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterGroupLeader(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterGroupName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterGroupName(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterGroupName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterGroupName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterID(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterInstitution(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterInstitution(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterInstitution(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterInstitution(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterLastName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterLastName(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterLastName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterLastName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterMiddleName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterMiddleName(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterMiddleName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterMiddleName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimenterUserName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimenterUserName(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimenterUserName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimenterUserName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimentExperimenterRef(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimentExperimenterRef(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimentExperimenterRef(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimentExperimenterRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimentID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimentID(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimentID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimentID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExperimentType(String) - Method in class loci.formats.FormatReader
Retrieves an ExperimentType enumeration value for the given String.
getExperimentType(int) - Method in class loci.formats.meta.AggregateMetadata
 
getExperimentType(int) - Method in class loci.formats.meta.DummyMetadata
 
getExperimentType(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getExperimentType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getExposures() - Method in class loci.formats.in.MetamorphHandler
 
getExposureTime() - Method in class loci.formats.in.SVSReader
 
getExposureTime(int) - Method in class loci.tests.testng.Configuration
 
getExposureTime() - Method in class ome.xml.model.Plane
 
getExposureTimes() - Method in class loci.formats.in.ND2Handler
 
getExpressionLength() - Method in class loci.poi.hssf.record.FormulaRecord
get the length (in number of tokens) of the expression
getExpressionLength() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getExtendedRst() - Method in class loci.poi.hssf.record.UnicodeString
 
getExtension() - Method in class loci.formats.gui.ExtensionFileFilter
Gets the filter's first valid extension.
getExtensionFunctions() - Method in class loci.plugins.macro.MacroFunctions
 
getExtensions() - Method in class loci.formats.gui.ExtensionFileFilter
Gets the filter's valid extensions.
getExternal() - Method in class ome.xml.model.BinaryFile
 
getExternalDescription() - Method in class ome.xml.model.Well
 
getExternalIdentifier() - Method in class ome.xml.model.Plate
 
getExternalIdentifier() - Method in class ome.xml.model.Well
 
getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getExternSheetNumber() - Method in class loci.poi.hssf.record.NameRecord
gets the extern sheet number
getExternsheetPos() - Method in class loci.poi.hssf.model.WorkbookRecordList
Returns the externsheetPos.
getExtraLayers(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo
Returns the number of extra layers to add after the optimization point 'n', but before optimization point 'n+1'.
getExtraLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Returns the box extra length.
getf(int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getf(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getFailureClass() - Method in exception loci.common.services.DependencyException
Returns the class that was used during a failed instantiation.
getFamily() - Method in class loci.poi.hssf.record.FontRecord
get the font family (TODO)
getFieldIndex() - Method in class loci.formats.in.ND2Handler
 
getFieldIndex() - Method in class ome.xml.model.Plate
 
getFieldName(Class<?>, int) - Static method in class loci.common.DebugTools
This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.
getFieldName(int) - Static method in class loci.formats.tiff.IFD
This method uses reflection to scan the values of this class's static fields, returning the first matching field's name.
getFieldName(Class<?>, int) - Static method in class ome.scifio.common.DebugTools
This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.
getFilamentID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilamentID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilamentID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilamentID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilamentLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilamentLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilamentLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilamentLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilamentManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilamentManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilamentManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilamentManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilamentModel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilamentModel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilamentModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilamentModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilamentPower(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilamentPower(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilamentPower(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilamentPower(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilamentSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilamentSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilamentSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilamentSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilamentType(String) - Method in class loci.formats.FormatReader
Retrieves an FilamentType enumeration value for the given String.
getFilamentType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilamentType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilamentType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilamentType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFile(int) - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the File with the given channel.
getFile(int, int, int) - Method in class loci.formats.in.PrairieMetadata
Gets the Frame at the given (cycle, index, channel).
getFile(int, int) - Method in class loci.formats.in.PrairieMetadata.Sequence
Gets the Frame at the given (cycle, index, channel).
getFile() - Method in interface loci.formats.services.NetCDFService
Retrieves the current initialized file path.
getFile() - Method in class loci.formats.services.NetCDFServiceImpl
 
getFile() - Method in class loci.tests.testng.Configuration
 
getFileAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getFileAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getFileAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getFileAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFileAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFileAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFileAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFileAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFileAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFileAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getFileAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getFileAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFileAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFileAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getFileAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getFileAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getFileAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFileAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getFileAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getFileAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFileAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFileAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getFileAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getFileAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFileAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFileAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getFileAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getFileAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFileAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFileChannel() - Method in class loci.common.NIOFileHandle
Gets the FileChannel from this FileHandle.
getFileChannel() - Method in class ome.scifio.io.NIOFileHandle
Gets the FileChannel from this FileHandle.
getFileIdClusters() - Method in class loci.poi.ddf.EscherDggRecord
 
getFileInfo(int) - Method in class loci.formats.ome.OmeisImporter
Deprecated.
Gets information about the file corresponding to the given file ID.
getFilename(int, int, IFormatReader, String) - Static method in class loci.formats.FormatTools
 
getFilename() - Method in class loci.formats.in.PrairieMetadata.PFile
Gets the filename associated with this File.
getFileName() - Method in class ome.xml.model.BinaryFile
 
getFileName() - Method in class ome.xml.model.UUID
 
getFilenames(String, IFormatReader) - Static method in class loci.formats.FormatTools
 
getFilePattern() - Method in class loci.formats.AxisGuesser
Gets the file pattern.
getFilePattern() - Method in class loci.formats.FileStitcher
Gets the file pattern object used to build the list of files.
getFilePointer() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper
 
getFilePointer() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper
 
getFilePointer() - Method in class loci.common.ByteArrayHandle
 
getFilePointer() - Method in class loci.common.FileHandle
 
getFilePointer() - Method in interface loci.common.IRandomAccess
Returns the current offset in this stream.
getFilePointer() - Method in class loci.common.NIOFileHandle
 
getFilePointer() - Method in class loci.common.NIOInputStream
Gets the current (absolute) file pointer.
getFilePointer() - Method in class loci.common.RandomAccessInputStream
Gets the current (absolute) file pointer.
getFilePointer() - Method in class loci.common.RandomAccessOutputStream
Returns the current offset within the stream.
getFilePointer() - Method in class loci.common.StreamHandle
 
getFilePointer() - Method in class ome.scifio.io.ByteArrayHandle
 
getFilePointer() - Method in class ome.scifio.io.FileHandle
 
getFilePointer() - Method in interface ome.scifio.io.IRandomAccess
Returns the current offset in this stream.
getFilePointer() - Method in class ome.scifio.io.NIOFileHandle
 
getFilePointer() - Method in class ome.scifio.io.NIOInputStream
Gets the current (absolute) file pointer.
getFilePointer() - Method in class ome.scifio.io.RandomAccessInputStream
Gets the current (absolute) file pointer.
getFilePointer() - Method in class ome.scifio.io.RandomAccessOutputStream
Returns the current offset within the stream.
getFilePointer() - Method in class ome.scifio.io.StreamHandle
 
getFiles() - Method in class loci.formats.FilePattern
Gets a listing of all files matching the given file pattern.
getFiles(String, List, ConfigurationTree, String) - Static method in class loci.tests.testng.TestTools
Recursively generate a list of files to test.
getFiles(String, List, ConfigurationTree, String, String[]) - Static method in class loci.tests.testng.TestTools
Recursively generate a list of files to test.
getFiles(String, List, ConfigurationTree, String, String[], String) - Static method in class loci.tests.testng.TestTools
Recursively generate a list of files to test.
getFileSharing() - Method in class loci.poi.hssf.model.Workbook
 
getFileSize(String) - Method in interface loci.formats.services.POIService
Retrieve the total number of bytes in the given file.
getFileSize(String) - Method in class loci.formats.services.POIServiceImpl
 
getFileStitcher() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getFileTimestamp() - Static method in class loci.common.DateTools
Returns a timestamp for the current timezone in a format suitable for a filename in a locale-independent format ("YYYY-MM-DD_HH-MM-SS")
getFileTimestamp() - Static method in class ome.scifio.common.DateTools
Returns a timestamp for the current timezone in a format suitable for a filename in a locale-independent format ("YYYY-MM-DD_HH-MM-SS")
getFillBackground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the background palette color index
getFillBackgroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the background fill color
getFillByte() - Static method in class loci.poi.poifs.storage.DocumentBlock
 
getFillColor() - Method in class loci.poi.hssf.usermodel.HSSFShape
The color used to fill this shape.
getFillColor() - Method in class ome.xml.model.Shape
 
getFillForeground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the foreground palette color index
getFillForegroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the foreground fill color
getFillPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the fill palette options bitmask (see indivdual bit getters that reference this method)
getFillPattern() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the fill pattern (??) - set to 1 to fill with foreground color
getFillRule(String) - Method in class loci.formats.FormatReader
Retrieves an FillRule enumeration value for the given String.
getFillRule() - Method in class ome.xml.model.Shape
 
getFilter() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets filters.
getFilter() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Filter should always be 0
getFilter(int) - Method in class ome.xml.model.Instrument
 
getFilterCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterFilterWheel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterFilterWheel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterFilterWheel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterFilterWheel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterModel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterModel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets filters
getFilters() - Method in class loci.formats.gui.ComboFileFilter
Gets the list of file filters forming this filter combination.
getFilterSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSet(int) - Method in class ome.xml.model.Instrument
 
getFilterSetCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetDichroicRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetDichroicRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetDichroicRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetDichroicRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetEmissionFilterRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetEmissionFilterRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetEmissionFilterRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetEmissionFilterRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetEmissionFilterRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetEmissionFilterRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetEmissionFilterRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetEmissionFilterRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetExcitationFilterRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetExcitationFilterRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetExcitationFilterRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetExcitationFilterRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetExcitationFilterRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetExcitationFilterRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetExcitationFilterRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetExcitationFilterRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetModel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetModel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterSetSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterSetSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterSetSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterSetSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
Returns the type of filter used according to the FilterTypes interface.
getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the type of filter used according to the FilterTypes interface(W9x7).
getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the type of filter used according to the FilterTypes interface (W5x3).
getFilterType(String) - Method in class loci.formats.FormatReader
Retrieves an FilterType enumeration value for the given String.
getFilterType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getFilterType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getFilterType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getFilterType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getFilterWheel() - Method in class ome.xml.model.Filter
 
getFinalCRC() - Method in class loci.common.CRC
 
getFinalCRC() - Method in class ome.scifio.common.CRC
 
getFirst() - Method in class loci.formats.FilePattern
 
getFirst() - Method in class loci.formats.FilePatternBlock
 
getFirstC() - Method in class ome.xml.model.TiffData
 
getFirstCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getFirstCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow
get the number of the first cell contained in this row.
getFirstChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getFirstCodeStreamLength() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
This method returns the length of the first contiguous codestreams in the file
getFirstCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
This method returns the position of the first contiguous codestreams in the file
getFirstCol() - Method in class loci.poi.hssf.record.DimensionsRecord
get the first column number for the sheet
getFirstCol() - Method in class loci.poi.hssf.record.RowRecord
get the logical col number for the first cell this row (0 based index)
getFirstColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord
get the first column this record defines formatting info for
getFirstColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getFirstColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getFirstColumn() - Method in class loci.poi.hssf.record.MulBlankRecord
starting column (first cell this holds in the row)
getFirstColumn() - Method in class loci.poi.hssf.record.MulRKRecord
starting column (first cell this holds in the row)
getFirstColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference
 
getFirstColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getFirstFile() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the first File of the Sequence.
getFirstFrame() - Method in class loci.formats.in.PrairieMetadata.Sequence
Gets the first Frame of the Sequence.
getFirstIFD() - Method in class loci.formats.tiff.TiffParser
Gets the first IFD within the TIFF file, or null if the input source is not a valid TIFF file.
getFirstIFDEntry(int) - Method in class loci.formats.tiff.TiffParser
Retrieve a given entry from the first IFD in the stream.
getFirstName() - Method in class ome.xml.model.Experimenter
 
getFirstOffset() - Method in class loci.formats.tiff.TiffParser
Gets offset to the first IFD, or -1 if stream is not TIFF.
getFirstRow() - Method in class loci.poi.hssf.record.DimensionsRecord
get the first row number for the sheet
getFirstRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getFirstRow() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getFirstRow() - Method in class loci.poi.hssf.record.IndexRecord
 
getFirstRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference
 
getFirstRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getFirstRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getFirstRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet
gets the first row on the sheet
getFirstSection() - Method in class loci.poi.hpsf.PropertySet
Gets the PropertySet's first section.
getFirstSection() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getFirstSequence() - Method in class loci.formats.in.PrairieMetadata
Gets the first Sequence.
getFirstT() - Method in class ome.xml.model.TiffData
 
getFirstTimeInfo() - Method in class loci.plugins.in.ImporterOptions
 
getFirstZ() - Method in class ome.xml.model.TiffData
 
getFitHeight() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getFitHeight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the number of pages high to fit the sheet in.
getFitToPage() - Method in class loci.poi.hssf.record.WSBoolRecord
fit to page option is on
getFitToPage() - Method in class loci.poi.hssf.usermodel.HSSFSheet
fit to page option is on
getFitWidth() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getFitWidth() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the number of pages wide to fit sheet in.
getFixedPoint(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the position of the fixed point in the specified component (i.e.
getFixedPoint(int) - Method in interface jj2000.j2k.image.BlkImgDataSrc
Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.
getFixedPoint(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Returns the position of the fixed point in the specified component.
getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataConverter
Returns the position of the fixed point in the specified component.
getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the position of the fixed point in the specified component.
getFixedPoint(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
Returns the position of the fixed point in the specified component (i.e.
getFixedPoint(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
Returns the position of the fixed point in the specified component.
getFixedPoint(int) - Method in class jj2000.j2k.image.Tiler
Returns the position of the fixed point in the specified component.
getFixedPoint(int) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer
Returns the position of the fixed point in the output data for the specified component.
getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc
Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.
getFixedPoint(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the position of the fixed point in the specified component.
getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec
Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.
getFixedPoint(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
Returns the position of the fixed point in the specified component.
getFlag() - Method in class loci.poi.ddf.EscherClientAnchorRecord
0 = Move and size with Cells, 2 = Move but don't size with cells, 3 = Don't move or size with cells.
getFlag() - Method in class loci.poi.hssf.record.SupBookRecord
 
getFlag() - Method in class loci.poi.hssf.record.UseSelFSRecord
returns whether we use natural language formulas or not
getFlags() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
Returns the Flags data element.
getFlags() - Method in class loci.poi.ddf.EscherSpRecord
The flags that apply to this shape.
getFlags() - Method in class loci.poi.hssf.record.NoteRecord
Options flags.
getFlags() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
Get the flags field for the SheetProperties record.
getFlexFiles() - Method in class loci.formats.in.FlexReader.MeaHandler
 
getFloatArray() - Method in class loci.plugins.util.RecordedImageProcessor
 
getFloats(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of floats, one per channel.
getFloats(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of floats, one per channel.
getFloats(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of floats, one per channel.
getFluor() - Method in class ome.xml.model.Channel
 
getFlushedPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
getFnGroup() - Method in class loci.poi.hssf.record.NameRecord
 
getFont() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getFontAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
get the font at the given index number
getFontAtIndex(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
Returns the font in use at a particular index.
getFontFamily(String) - Method in class loci.formats.FormatReader
Retrieves an FontFamily enumeration value for the given String.
getFontFamily() - Method in class ome.xml.model.Shape
 
getFontHeight() - Method in class loci.poi.hssf.record.FontRecord
gets the height of the font in 1/20th point units
getFontHeight() - Method in class loci.poi.hssf.usermodel.HSSFFont
get the font height in unit's of 1/20th of a point.
getFontHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFFont
get the font height
getFontIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the index to the FONT record (which font to use 0 based)
getFontIndex() - Method in class loci.poi.hssf.record.FontIndexRecord
Get the font index field for the FontIndex record.
getFontIndex() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun
 
getFontIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
 
getFontMetrics() - Method in class loci.plugins.util.RecordedImageProcessor
 
getFontMetrics() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getFontName() - Method in class loci.poi.hssf.record.FontRecord
get the name of the font
getFontName() - Method in class loci.poi.hssf.usermodel.FontDetails
 
getFontName() - Method in class loci.poi.hssf.usermodel.HSSFFont
get the name for the font (i.e.
getFontNameLength() - Method in class loci.poi.hssf.record.FontRecord
get the length of the fontname string
getFontOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
Gets the font used in a particular formatting run.
getFontpos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getFontRecordAt(int) - Method in class loci.poi.hssf.model.Workbook
gets the font record at the given index in the font table.
getFontRenderContext() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getFontRenderContext() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getFontSize(Integer) - Static method in class loci.formats.FormatTools
 
getFontSize() - Method in class ome.xml.model.Shape
 
getFontStyle(String) - Method in class loci.formats.FormatReader
Retrieves an FontStyle enumeration value for the given String.
getFontStyle() - Method in class ome.xml.model.Shape
 
getFooter(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable
 
getFooter() - Method in class loci.poi.hssf.model.Sheet
Returns the FooterRecord.
getFooter() - Method in class loci.poi.hssf.record.FooterRecord
get the footer string
getFooter() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Gets the user model for the document footer.
getFooterLength() - Method in class loci.poi.hssf.record.FooterRecord
get the length of the footer string
getFooterMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getFooterMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the footer margin.
getForceThumbnailsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getForecolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord
Get the forecolor index field for the AreaFormat record.
getForegroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord
Get the foreground color field for the AreaFormat record.
getFormat() - Method in class loci.formats.FormatHandler
 
getFormat() - Method in interface loci.formats.IFormatHandler
Gets the name of this file format.
getFormat(String) - Method in class loci.formats.ImageReader
Gets a string describing the file format for the given file.
getFormat() - Method in class loci.formats.ImageReader
 
getFormat(String) - Method in class loci.formats.ImageWriter
Gets a string describing the file format for the given file.
getFormat() - Method in class loci.formats.ImageWriter
 
getFormat() - Method in class loci.formats.ReaderWrapper
 
getFormat() - Method in class loci.formats.WriterWrapper
 
getFormat(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
getFormat() - Method in class loci.poi.hpsf.PropertySet
Returns the property set stream's low-level "format" field.
getFormat() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getFormat(String, boolean) - Method in class loci.poi.hssf.model.Workbook
Returns a format index that matches the passed in format.
getFormat() - Method in class loci.poi.hssf.record.LineFormatRecord
Get the format field for the LineFormat record.
getFormat(String) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat
get the format index that matches the given format string.
getFormat(short) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat
get the format string that matches the given format index
getFormatFlags() - Method in class loci.poi.hssf.record.AreaFormatRecord
Get the format flags field for the AreaFormat record.
getFormatFlags() - Method in class loci.poi.hssf.record.AreaRecord
Get the format flags field for the Area record.
getFormatFlags() - Method in class loci.poi.hssf.record.BarRecord
Get the format flags field for the Bar record.
getFormatFlags() - Method in class loci.poi.hssf.record.DataFormatRecord
Get the format flags field for the DataFormat record.
getFormatFlags() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
Get the format flags field for the SeriesLabels record.
getFormatID() - Method in class loci.poi.hpsf.Section
Returns the format ID.
getFormatIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the index to the Format record (which FORMAT to use 0-based)
getFormatIndex() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
Get the format index field for the NumberFormatIndex record.
getFormatLine(PrintFormatTable.PrintStyles, String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable
 
getFormatName() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getFormatRun(int) - Method in class loci.poi.hssf.record.UnicodeString
 
getFormatRunCount() - Method in class loci.poi.hssf.record.UnicodeString
 
getFormats() - Method in class loci.poi.hssf.model.Workbook
Returns the list of FormatRecords in the workbook.
getFormatString() - Method in class loci.poi.hssf.record.FormatRecord
get the format string
getFormatted() - Method in class loci.poi.hssf.record.RowRecord
get whether the row has been formatted (even if its got all blank cells)
getFormattingRunLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Get the formatting run length field for the TextObjectBase record.
getFormulaOfLink() - Method in class loci.poi.hssf.record.LinkedDataRecord
Get the formula of link field for the LinkedData record.
getFormulaRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getFormulaTokens() - Method in class loci.poi.hssf.record.LinkedDataFormulaField
 
getFrame(int, int) - Method in class loci.formats.in.PrairieMetadata
Gets the Frame at the given (cycle and index).
getFrame(int) - Method in class loci.formats.in.PrairieMetadata.Sequence
Gets the Frame with the given index.
getFramesPerSecond() - Method in class loci.formats.FormatWriter
 
getFramesPerSecond() - Method in interface loci.formats.IFormatWriter
Gets the frames per second to use when writing.
getFramesPerSecond() - Method in class loci.formats.ImageWriter
 
getFramesPerSecond() - Method in class loci.formats.WriterWrapper
 
getFreezePanes() - Method in class loci.poi.hssf.record.WindowTwoRecord
get whether the window should freeze panes
getFreezePanesNoSplit() - Method in class loci.poi.hssf.record.WindowTwoRecord
freeze unsplit panes or not
getFrequencyMultiplication() - Method in class ome.xml.model.Laser
 
getFromCell() - Method in class loci.poi.hssf.util.RangeAddress
 
getFromCompressedUnicode(byte[], int, int) - Static method in class loci.poi.util.StringUtil
Read 8 bit data (in ISO-8859-1 codepage) into a (unicode) Java String and return.
getFromUnicodeBE(byte[], int, int) - Static method in class loci.poi.util.StringUtil
Given a byte array of 16-bit unicode characters in big endian format (most important byte first), return a Java String representation of it.
getFromUnicodeBE(byte[]) - Static method in class loci.poi.util.StringUtil
Given a byte array of 16-bit unicode characters in big endian format (most important byte first), return a Java String representation of it.
getFromUnicodeLE(byte[], int, int) - Static method in class loci.poi.util.StringUtil
Given a byte array of 16-bit unicode characters in Little Endian format (most important byte last), return a Java String representation of it.
getFromUnicodeLE(byte[]) - Static method in class loci.poi.util.StringUtil
Given a byte array of 16-bit unicode characters in little endian format (most important byte last), return a Java String representation of it.
getFullPrecision() - Method in class loci.poi.hssf.record.PrecisionRecord
get whether to use full precision or just skew all you figures all to hell.
getFunction() - Method in class mdbtools.dbengine.sql.FunctionDef
 
getFunctionIndex() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getGain() - Method in class loci.formats.in.MetamorphHandler
 
getGain(int) - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the cth gain for this Frame.
getGain() - Method in class ome.xml.model.Detector
 
getGain() - Method in class ome.xml.model.DetectorSettings
 
getGains() - Method in class loci.formats.in.ND2Handler
 
getGlobalCRC() - Method in class loci.common.CRC
 
getGlobalCRC() - Method in class ome.scifio.common.CRC
 
getGlobalMeta(String) - Method in class loci.formats.FormatReader
Gets a value from the global metadata table.
getGlobalMetadata() - Method in class loci.formats.FormatReader
 
getGlobalMetadata() - Method in interface loci.formats.IFormatReader
Obtains the hashtable containing the metadata field/value pairs from the current file.
getGlobalMetadata() - Method in class loci.formats.ImageReader
 
getGlobalMetadata() - Method in class loci.formats.in.LeicaHandler
 
getGlobalMetadata() - Method in class loci.formats.ReaderWrapper
 
getGreen(int) - Method in class loci.formats.gui.Index16ColorModel
 
getGreen(int) - Method in class loci.formats.gui.SignedColorModel
 
getGreen(Object) - Method in class loci.formats.gui.SignedColorModel
 
getGreen(int) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getGreen(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getGreen() - Method in class loci.poi.ddf.EscherRGBProperty
 
getGreen() - Method in class ome.xml.model.primitives.Color
Returns the green component of this color.
getGreens() - Method in class loci.formats.gui.Index16ColorModel
Return the array of green color components.
getGridset() - Method in class loci.poi.hssf.record.GridsetRecord
get whether the gridlines are shown during printing.
getGridsetRecord() - Method in class loci.poi.hssf.model.Sheet
Gets the gridset record for this sheet.
getGroupBy(int) - Method in class mdbtools.dbengine.sql.Select
 
getGroupByCount() - Method in class mdbtools.dbengine.sql.Select
 
getGroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getGuardBits() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets guardBits
getHandle(String) - Static method in class loci.common.Location
Gets an IRandomAccess object that can read from the given file.
getHandle(String, boolean) - Static method in class loci.common.Location
Gets an IRandomAccess object that can read from or write to the given file.
getHandle(String, boolean, boolean) - Static method in class loci.common.Location
Gets an IRandomAccess object that can read from or write to the given file.
getHandle(String) - Static method in class ome.scifio.io.Location
Gets an IRandomAccess object that can read from the given file.
getHandle(String, boolean) - Static method in class ome.scifio.io.Location
Gets an IRandomAccess object that can read from or write to the given file.
getHandle(String, boolean, boolean) - Static method in class ome.scifio.io.Location
Gets an IRandomAccess object that can read from or write to the given file.
getHashSHA1() - Method in class ome.xml.model.Plane
 
getHCenter() - Method in class loci.poi.hssf.record.HCenterRecord
get whether or not to horizonatally center this sheet.
getHeader() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getHeader(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable
 
getHeader() - Method in class loci.poi.hssf.model.Sheet
Returns the HeaderRecord.
getHeader() - Method in class loci.poi.hssf.record.HeaderRecord
get the header string
getHeader() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Gets the user model for the document header.
getHeaderColor() - Method in class loci.poi.hssf.record.WindowTwoRecord
get the palette index for the header color
getHeaderLength() - Method in class loci.poi.hssf.record.HeaderRecord
get the length of the header string
getHeaderMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getHeaderMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the header margin.
getHeaderPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the pixel type as specified in the header.
getHeaders() - Method in class ome.scifio.common.IniList
Gets the table names (headers) in the list.
getHeaderSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the number of channels the image has as specified in the header.
getHeaderSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the width of the image as specified in the header.
getHeaderSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the height of the image as specified in the header.
getHeadingPair() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the heading pair (or null) when this method is implemented.
getHeight() - Method in class com.luratech.lwf.lwfDecoder
 
getHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the height of the image.
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Returns the height of the image.
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getHeight() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getHeight() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder
Returns the number of leafs along the vertical direction.
getHeight() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
Returns the number of leafs along the vertical direction.
getHeight() - Method in class loci.formats.codec.JPEGTileDecoder
 
getHeight(int) - Method in class loci.formats.in.LegacyND2Reader
 
getHeight() - Method in interface loci.formats.services.LuraWaveService
getHeight() - Method in class loci.formats.services.LuraWaveServiceImpl
 
getHeight(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack
 
getHeight() - Method in class loci.plugins.util.BFVirtualStack
 
getHeight() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Retrieve the height of the metafile in EMU's (English Metric Units).
getHeight() - Method in class loci.poi.hssf.record.AxisParentRecord
Get the height field for the AxisParent record.
getHeight() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getHeight() - Method in class loci.poi.hssf.record.ChartRecord
Get the height field for the Chart record.
getHeight() - Method in class loci.poi.hssf.record.RowRecord
get the height of the row
getHeight() - Method in class loci.poi.hssf.record.TextRecord
Get the height field for the Text record.
getHeight() - Method in class loci.poi.hssf.record.WindowOneRecord
get the height of the window
getHeight() - Method in class loci.poi.hssf.usermodel.FontDetails
 
getHeight() - Method in class loci.poi.hssf.usermodel.HSSFRow
get the row's height or ff (-1) for undefined/default-height in twips (1/20th of a point)
getHeight() - Method in class loci.poi.hssf.util.RangeAddress
 
getHeight() - Method in class ome.xml.model.Mask
 
getHeight() - Method in class ome.xml.model.Rectangle
 
getHeightBasis() - Method in class loci.poi.hssf.record.FontBasisRecord
Get the height basis field for the FontBasis record.
getHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFRow
get the row's height or ff (-1) for undefined/default-height in points (20*getHeight())
getHelpTopicLength() - Method in class loci.poi.hssf.record.NameRecord
gets the help topic length
getHelpTopicText() - Method in class loci.poi.hssf.record.NameRecord
get the help topic text
getHexString(byte[]) - Static method in class loci.common.DataTools
Deprecated.
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AQUA
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLACK
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BROWN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORAL
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GOLD
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIME
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.MAROON
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PINK
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PLUM
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.RED
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROSE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TAN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TEAL
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.WHITE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW
 
getHexString(byte[]) - Static method in class ome.scifio.common.DataTools
Deprecated.
getHFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
Returns the horizontal analysis filters to be used in component 'n' and tile 't'.
getHFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
Returns the horizontal analysis filters to be used in component 'n' and tile 't'.
getHH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
Returns the HH child subband of this subband.
getHH() - Method in class jj2000.j2k.wavelet.Subband
Returns the HH child subband of this subband.
getHH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
Returns the HH child subband of this subband.
getHidden() - Method in class loci.poi.hssf.record.ColumnInfoRecord
get whether or not these cells are hidden
getHidden() - Method in class loci.poi.hssf.record.WindowOneRecord
get whether the window is hidden or not
getHidden() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get whether the cell's using this style are to be hidden
getHiddenCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the hidden count or 0 if the DocumentSummaryInformation does not contain a hidden count.
getHideObj() - Method in class loci.poi.hssf.record.HideObjRecord
get hide object options
getHistogram() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHistogramMax() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHistogramMin() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHistogramSize() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHistoryBitMask() - Method in class loci.poi.hssf.record.BOFRecord
get the history bit mask (not very useful)
getHL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
Returns the HL (horizontal high-pass) child subband of this subband.
getHL() - Method in class jj2000.j2k.wavelet.Subband
Returns the HL (horizontal high-pass) child subband of this subband.
getHL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
Returns the HL (horizontal high-pass) child subband of this subband.
getHorAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT
Returns the horizontal analysis wavelet filters used in each level, for the specified tile-component.
getHorAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the horizontal analysis wavelet filters used in each level, for the specified component and tile.
getHorizontalAlignment() - Method in class loci.poi.hssf.record.TextRecord
Get the horizontal alignment field for the Text record.
getHorizontalHold() - Method in class loci.poi.hssf.record.WindowOneRecord
get the horizontal position of the window (in 1/20ths of a point)
getHorizontallyCenter() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Determine whether printed output for this sheet will be horizontally centered.
getHorizontalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
Return the horizontal resolution.
getHorizontalScale() - Method in class loci.poi.hssf.record.PlotGrowthRecord
Get the horizontalScale field for the PlotGrowth record.
getHorizontalSplitPosition() - Method in class loci.poi.hssf.util.PaneInformation
Returns the horizontal position of the split.
getHorizontalSplitTopRow() - Method in class loci.poi.hssf.util.PaneInformation
For a horizontal split returns the top row in the BOTTOM pane.
getHorizontalTextAlignment() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getHorWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
This function returns the horizontal wavelet filter relevant to this subband
getHorWFilter() - Method in class jj2000.j2k.wavelet.Subband
This function returns the horizontal wavelet filter relevant to this subband
getHorWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
This function returns the horizontal wavelet filter relevant to this subband
getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.
getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.
getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.
getHPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
Returns the equivalent high-pass synthesis waveform of a cascade of filters, given the syhthesis waveform of the previous stage.
gethref() - Method in class ome.xml.model.External
 
getHResolution() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getHResolution() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the horizontal resolution.
getHtmlFooter() - Static method in class loci.formats.tools.PrintFormatTable
 
getHtmlFormatLine(String, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable
 
getHtmlHeader() - Static method in class loci.formats.tools.PrintFormatTable
 
getHumidity() - Method in class ome.xml.model.ImagingEnvironment
 
getICCProfile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
Returns the ICC color profile in this color specification box.
getIconic() - Method in class loci.poi.hssf.record.WindowOneRecord
get whether the window has been iconized or not
getId() - Method in class loci.plugins.in.ImporterOptions
 
getId() - Method in class loci.poi.ddf.EscherProperty
 
getID() - Method in class loci.poi.hpsf.Property
Returns the property's ID.
getId() - Method in class loci.poi.hssf.record.SeriesTextRecord
Get the id field for the SeriesText record.
getID() - Method in class loci.tests.testng.FormatReaderTest
 
getID() - Method in class ome.xml.model.Annotation
 
getID() - Method in class ome.xml.model.AnnotationRef
 
getID() - Method in class ome.xml.model.Channel
 
getID() - Method in class ome.xml.model.ChannelRef
 
getID() - Method in class ome.xml.model.Dataset
 
getID() - Method in class ome.xml.model.DatasetRef
 
getID() - Method in class ome.xml.model.Detector
 
getID() - Method in class ome.xml.model.DetectorSettings
 
getID() - Method in class ome.xml.model.Dichroic
 
getID() - Method in class ome.xml.model.DichroicRef
 
getID() - Method in class ome.xml.model.Experiment
 
getID() - Method in class ome.xml.model.Experimenter
 
getID() - Method in class ome.xml.model.ExperimenterGroup
 
getID() - Method in class ome.xml.model.ExperimenterGroupRef
 
getID() - Method in class ome.xml.model.ExperimenterRef
 
getID() - Method in class ome.xml.model.ExperimentRef
 
getID() - Method in class ome.xml.model.Filter
 
getID() - Method in class ome.xml.model.FilterRef
 
getID() - Method in class ome.xml.model.FilterSet
 
getID() - Method in class ome.xml.model.FilterSetRef
 
getID() - Method in class ome.xml.model.Image
 
getID() - Method in class ome.xml.model.ImageRef
 
getID() - Method in class ome.xml.model.Instrument
 
getID() - Method in class ome.xml.model.InstrumentRef
 
getID() - Method in class ome.xml.model.Leader
 
getID() - Method in class ome.xml.model.LightSource
 
getID() - Method in class ome.xml.model.LightSourceSettings
 
getID() - Method in class ome.xml.model.MicrobeamManipulation
 
getID() - Method in class ome.xml.model.MicrobeamManipulationRef
 
getID() - Method in class ome.xml.model.Objective
 
getID() - Method in class ome.xml.model.ObjectiveSettings
 
getID() - Method in class ome.xml.model.Pixels
 
getID() - Method in class ome.xml.model.Plate
 
getID() - Method in class ome.xml.model.PlateAcquisition
 
getID() - Method in class ome.xml.model.PlateRef
 
getID() - Method in class ome.xml.model.Project
 
getID() - Method in class ome.xml.model.ProjectRef
 
getID() - Method in class ome.xml.model.Pump
 
getID() - Method in class ome.xml.model.Reagent
 
getID() - Method in class ome.xml.model.ReagentRef
 
getID() - Method in class ome.xml.model.Reference
Retrieves the reference's target object ID.
getID() - Method in class ome.xml.model.ROI
 
getID() - Method in class ome.xml.model.ROIRef
 
getID() - Method in class ome.xml.model.Screen
 
getID() - Method in class ome.xml.model.Shape
 
getID() - Method in class ome.xml.model.Well
 
getID() - Method in class ome.xml.model.WellSample
 
getID() - Method in class ome.xml.model.WellSampleRef
 
getIdInfo() - Method in class loci.plugins.in.ImporterOptions
 
getIdLocation() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.READER.
getIdMap() - Static method in class loci.common.Location
Return the id mapping.
getIdMap() - Static method in class ome.scifio.io.Location
Return the id mapping.
getIdName() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.READER.
getIFD(long) - Method in class loci.formats.tiff.TiffParser
Gets the IFD stored at the given offset.
getIFD() - Method in class ome.xml.model.TiffData
 
getIFDIntArray(int) - Method in class loci.formats.tiff.IFD
Gets the given directory entry values in int format from this IFD, performing some error checking.
getIFDIntValue(int) - Method in class loci.formats.tiff.IFD
Gets the given directory entry value in int format from this IFD, or -1 if the given directory does not exist.
getIFDIntValue(int, int) - Method in class loci.formats.tiff.IFD
Gets the given directory entry value in int format from this IFD, performing some error checking.
getIFDLongArray(int) - Method in class loci.formats.tiff.IFD
Gets the given directory entry values in long format from this IFD, performing some error checking.
getIFDLongValue(int, long) - Method in class loci.formats.tiff.IFD
Gets the given directory entry value in long format from this IFD, performing some error checking.
getIFDOffsets() - Method in class loci.formats.tiff.TiffParser
Gets the offsets to every IFD in the file.
getIFDRationalValue(int) - Method in class loci.formats.tiff.IFD
Gets the given directory entry value in rational format from this IFD, performing some error checking.
getIFDs() - Method in class loci.formats.in.MinimalTiffReader
Gets the list of IFDs associated with the current TIFF's image planes.
getIFDs() - Method in class loci.formats.tiff.TiffParser
Returns all IFDs in the file.
getIFDShortArray(int) - Method in class loci.formats.tiff.IFD
Gets the given directory entry values in short format from this IFD, performing some error checking.
getIFDStringValue(int) - Method in class loci.formats.tiff.IFD
Gets the given directory entry value as a string from this IFD, performing some error checking.
getIFDTagName(int) - Static method in class loci.formats.tiff.IFD
Gets the name of the IFD tag encoded by the given number.
getIFDTextValue(int) - Method in class loci.formats.tiff.IFD
Gets the given directory entry value as a string (regardless of type).
getIFDValue(int) - Method in class loci.formats.tiff.IFD
Gets the given directory entry value from this IFD.
getIFDValue(int, Class) - Method in class loci.formats.tiff.IFD
Gets the given directory entry value from this IFD, performing some error checking.
getIFDValue(TiffIFDEntry) - Method in class loci.formats.tiff.TiffParser
Retrieve the value corresponding to the given TiffIFDEntry.
getIlluminationType(String) - Method in class loci.formats.FormatReader
Retrieves an IlluminationType enumeration value for the given String.
getIlluminationType() - Method in class ome.xml.model.Channel
 
getImage() - Method in class loci.formats.gui.ImageViewer
Gets the currently displayed image.
getImage(byte[], int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getImage(int) - Method in class ome.xml.model.OME
 
getImageAcquisitionDate(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageAcquisitionDate(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageAcquisitionDate(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageAcquisitionDate(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getImageAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageCount() - Method in class loci.formats.ChannelMerger
 
getImageCount() - Method in class loci.formats.ChannelSeparator
 
getImageCount() - Method in class loci.formats.FileStitcher
 
getImageCount() - Method in class loci.formats.FormatReader
 
getImageCount() - Method in interface loci.formats.IFormatReader
Determines the number of image planes in the current file.
getImageCount() - Method in class loci.formats.ImageReader
 
getImageCount() - Method in class loci.formats.meta.AggregateMetadata
 
getImageCount() - Method in class loci.formats.meta.DummyMetadata
 
getImageCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageCount() - Method in class loci.formats.ReaderWrapper
 
getImageCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getImageCreationDate() - Method in class loci.formats.in.BaseTiffReader
Retrieves the image creation date.
getImageCreationDate(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getImageDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageDescription() - Method in class loci.tests.testng.Configuration
 
getImageDimension(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
Retrieves the dimnsion of the imageIndexth image.
getImageExperimenterGroupRef(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageExperimenterGroupRef(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageExperimenterGroupRef(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageExperimenterGroupRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageExperimenterRef(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageExperimenterRef(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageExperimenterRef(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageExperimenterRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageExperimentRef(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageExperimentRef(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageExperimentRef(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageExperimentRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageID(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageIndex() - Method in class loci.formats.gui.ImageViewer
Gets the index of the currently displayed image.
getImageInstrumentRef(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageInstrumentRef(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageInstrumentRef(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageInstrumentRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageLength() - Method in class loci.formats.tiff.IFD
Retrieves the image's length (TIFF tag ImageLength) from a given TIFF IFD.
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getImageMicrobeamManipulationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageMicrobeamManipulationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getImageMicrobeamManipulationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageMicrobeamManipulationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageName() - Method in class loci.formats.in.MetamorphHandler
 
getImageName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageName(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageName() - Method in class loci.tests.testng.Configuration
 
getImageOffset(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
Retrieves the image offset of the imageIndexth image.
getImageReader() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.READER.
getImageROIRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageROIRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getImageROIRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageROIRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImageROIRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImageROIRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getImageROIRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImageROIRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImagesPerFile(String, IFormatReader) - Static method in class loci.formats.FormatTools
 
getImageType() - Method in class com.sun.media.imageio.stream.RawImageInputStream
Retrieves the image type.
getImageType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getImageWidth() - Method in class loci.formats.tiff.IFD
Retrieves the image's width (TIFF tag ImageWidth) from a given TIFF IFD.
getImagingDevice() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the imaging device associated with this Frame.
getImagingEnvironment() - Method in class ome.xml.model.Image
 
getImagingEnvironmentAirPressure(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImagingEnvironmentAirPressure(int) - Method in class loci.formats.meta.DummyMetadata
 
getImagingEnvironmentAirPressure(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImagingEnvironmentAirPressure(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImagingEnvironmentCO2Percent(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImagingEnvironmentCO2Percent(int) - Method in class loci.formats.meta.DummyMetadata
 
getImagingEnvironmentCO2Percent(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImagingEnvironmentCO2Percent(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImagingEnvironmentHumidity(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImagingEnvironmentHumidity(int) - Method in class loci.formats.meta.DummyMetadata
 
getImagingEnvironmentHumidity(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImagingEnvironmentHumidity(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImagingEnvironmentTemperature(int) - Method in class loci.formats.meta.AggregateMetadata
 
getImagingEnvironmentTemperature(int) - Method in class loci.formats.meta.DummyMetadata
 
getImagingEnvironmentTemperature(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getImagingEnvironmentTemperature(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getImgHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the overall height of the image in pixels.
getImgHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the overall height of the image in pixels, for the given resolution level.
getImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the image height in the reference grid.
getImgHeight() - Method in interface jj2000.j2k.image.ImgData
Returns the overall height of the image in pixels.
getImgHeight() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the overall height of the image in pixels.
getImgHeight() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the overall height of the image in pixels.
getImgHeight() - Method in class jj2000.j2k.image.input.ImgReader
Returns the overall height of the image in pixels.
getImgHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the overall height of the image in pixels.
getImgHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the overall height of the image in pixels, for the given resolution level.
getImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the overall height of the image in pixels, for the given resolution level.
getImgRes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the image resolution level to reconstruct from the codestream.
getImgULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.
getImgULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Return the horizontal upper-left coordinate of the image in the reference grid.
getImgULX() - Method in interface jj2000.j2k.image.ImgData
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULX() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULX() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULX() - Method in class jj2000.j2k.image.input.ImgReader
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULX() - Method in class jj2000.j2k.image.Tiler
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.
getImgULX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.
getImgULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.
getImgULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Return the vertical upper-left coordinate of the image in the reference grid.
getImgULY() - Method in interface jj2000.j2k.image.ImgData
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULY() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULY() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULY() - Method in class jj2000.j2k.image.input.ImgReader
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULY() - Method in class jj2000.j2k.image.Tiler
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.
getImgULY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.
getImgULY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.
getImgWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the overall width of the image in pixels.
getImgWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the overall width of the image in pixels, for the given (image) resolution level.
getImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the image width in the reference grid.
getImgWidth() - Method in interface jj2000.j2k.image.ImgData
Returns the overall width of the image in pixels.
getImgWidth() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the overall width of the image in pixels.
getImgWidth() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the overall width of the image in pixels.
getImgWidth() - Method in class jj2000.j2k.image.input.ImgReader
Returns the overall width of the image in pixels.
getImgWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the overall width of the image in pixels.
getImgWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the overall width of the image in pixels, for the given resolution level.
getImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the overall width of the image in pixels, for the given resolution level.
getImmersion(String) - Method in class loci.formats.FormatReader
Retrieves an Immersion enumeration value for the given String.
getImmersion() - Method in class loci.formats.in.ND2Handler
 
getImmersion() - Method in class loci.formats.in.PrairieMetadata.Frame
Extracts the immersion from the objective lens string.
getImmersion() - Method in class ome.xml.model.Objective
 
getImplementationType(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the implementation type of this wavelet transform, WT_IMPL_FULL (full-page based transform).
getImplementationType(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
Returns the implementation type of this wavelet transform, WT_IMPL_FULL (full-page based transform).
getImplementationType(int) - Method in interface jj2000.j2k.wavelet.WaveletTransform
Returns the implementation type of this wavelet transform (WT_IMPL_LINE or WT_IMPL_FRAME) for the specified component, in the current tile.
getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.
getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.
getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.
getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.
getImplType() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.
getIndent() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get indention (not sure of the units, think its spaces)
getIndention() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the number of spaces to indent the text in the cell
getIndentionOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the indent options bitmask (see corresponding bit getters that reference this field)
getIndex() - Method in class loci.formats.cache.CacheEvent
Gets the index relevant to the cache update, if any.
getIndex(int, int, int) - Method in class loci.formats.ChannelMerger
 
getIndex(int, int, int) - Method in class loci.formats.ChannelSeparator
 
getIndex(int, int, int) - Method in class loci.formats.DimensionSwapper
 
getIndex(int, int, int) - Method in class loci.formats.FileStitcher
 
getIndex(int, int, int) - Method in class loci.formats.FormatReader
 
getIndex(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools
Gets the rasterized index corresponding to the given Z, C and T coordinates.
getIndex(String, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools
Gets the rasterized index corresponding to the given Z, C and T coordinates.
getIndex(int, int, int) - Method in interface loci.formats.IFormatReader
Gets the rasterized index corresponding to the given Z, C and T coordinates.
getIndex(int, int, int) - Method in class loci.formats.ImageReader
 
getIndex() - Method in class loci.formats.in.BaseZeissReader.Tag
 
getIndex() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the index associated with this Frame.
getIndex(int, int, int) - Method in class loci.formats.ReaderWrapper
 
getIndex(Double, Double, Double, Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getIndex() - Method in class loci.poi.hssf.record.SeriesIndexRecord
Get the index field for the SeriesIndex record.
getIndex() - Method in class loci.poi.hssf.record.StyleRecord
get the entire index field (including the type) (see bit getters that reference this method)
getIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the index within the HSSFWorkbook (sequence within the collection of ExtnededFormat objects)
getIndex() - Method in class loci.poi.hssf.usermodel.HSSFFont
get the index within the HSSFWorkbook (sequence within the collection of Font objects)
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AQUA
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLACK
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BROWN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORAL
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GOLD
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIME
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.MAROON
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PINK
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PLUM
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.RED
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROSE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TAN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TEAL
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.WHITE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW
 
getIndex() - Method in class loci.poi.poifs.property.Property
get the index for this Property
getIndex(Object) - Method in class loci.poi.util.IntMapper
 
getIndex() - Method in class ome.xml.model.WellSample
 
getIndexCode() - Method in class loci.poi.hssf.record.FormatRecord
get the format index code (for built in formats)
getIndexColorModel() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
getIndexCount() - Method in class loci.formats.in.PrairieMetadata.Sequence
Gets the number of recorded indices at this Sequence.
getIndexedImage() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
getIndexHash() - Static method in class loci.poi.hssf.util.HSSFColor
this function returns all colors in a hastable.
getIndexMax() - Method in class loci.formats.in.PrairieMetadata.Sequence
Gets the maximum index value.
getIndexMin() - Method in class loci.formats.in.PrairieMetadata.Sequence
Gets the minimum index value.
getIndexNumberFmtRecord() - Method in class loci.poi.hssf.record.LinkedDataRecord
Get the index number fmt record field for the LinkedData record.
getIndexOfColorValue() - Method in class loci.poi.hssf.record.TextRecord
Get the index of color value field for the Text record.
getIndexOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
The index within the string to which the specified formatting run applies.
getIndexToFirstSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord
gets the index to first sheet from supbook
getIndexToFontTable() - Method in class loci.poi.hssf.record.FontBasisRecord
Get the index to font table field for the FontBasis record.
getIndexToLastSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord
gets the index to last sheet in supbook
getIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord
Convenience method to retrieve the index the name refers to.
getIndexToSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord
gets the index to sup book
getInfo() - Method in class loci.formats.in.SDTReader
Gets object containing SDT header information.
getInfo() - Method in class loci.plugins.prefs.Option
Gets documentation about the option.
getInfo(String) - Method in class loci.plugins.prefs.OptionsList
Gets the documentation for the option with the given key.
getInfoRecordAt(int) - Method in class loci.poi.hssf.record.ExtSSTRecord
 
getINI() - Method in class loci.tests.testng.Configuration
 
getInputOrder() - Method in class loci.formats.DimensionSwapper
 
getInputOrder(int) - Method in class loci.plugins.in.ImporterOptions
 
getInputStream() - Method in class loci.common.NIOInputStream
Returns the underlying InputStream.
getInputStream() - Method in class loci.common.ZipHandle
Returns the DataInputStream corresponding to the backing Zip entry.
getInputStream(String) - Method in interface loci.formats.services.POIService
Retrieve an InputStream corresponding to the given file name.
getInputStream(String) - Method in class loci.formats.services.POIServiceImpl
 
getInputStream() - Method in class ome.scifio.io.NIOInputStream
Returns the underlying InputStream.
getInputStream() - Method in class ome.scifio.io.ZipHandle
Returns the DataInputStream corresponding to the backing Zip entry.
getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
Returns a shared instance of a BaselineTIFFTagSet.
getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
Returns a shared instance of an EXIFGPSTagSet.
getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
Returns the shared instance of EXIFInteroperabilityTagSet.
getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet
Returns a shared instance of an EXIFParentTIFFTagSet.
getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
Returns a shared instance of an EXIFTIFFTagSet.
getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
Returns a shared instance of a FaxTIFFTagSet.
getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
Returns a shared instance of a GeoTIFFTagSet.
getInstance() - Static method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
 
getInstance() - Static method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
 
getInstance(Class<T>) - Method in class loci.common.services.ServiceFactory
Retrieves an instance of a given service.
getInstance(int) - Static method in class loci.formats.gui.TwoChannelColorSpace
 
getInstance() - Method in class loci.poi.ddf.EscherRecord
Returns the instance part of the option record.
getInstance() - Static method in class loci.poi.hpsf.wellknown.SectionIDMap
Returns the singleton instance of the default SectionIDMap.
getInstance() - Static method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
getInstance(int) - Static method in class loci.poi.util.BitFieldFactory
 
getInstitution() - Method in class ome.xml.model.Experimenter
 
getInstrument() - Method in class ome.xml.model.Detector
 
getInstrument() - Method in class ome.xml.model.Dichroic
 
getInstrument() - Method in class ome.xml.model.Filter
 
getInstrument() - Method in class ome.xml.model.FilterSet
 
getInstrument() - Method in class ome.xml.model.LightSource
 
getInstrument() - Method in class ome.xml.model.Objective
 
getInstrument(int) - Method in class ome.xml.model.OME
 
getInstrumentCount() - Method in class loci.formats.meta.AggregateMetadata
 
getInstrumentCount() - Method in class loci.formats.meta.DummyMetadata
 
getInstrumentCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getInstrumentCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getInstrumentID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getInstrumentID(int) - Method in class loci.formats.meta.DummyMetadata
 
getInstrumentID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getInstrumentID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getInt(byte[], int) - Static method in class loci.poi.util.LittleEndian
get an int value from a byte array
getInt(byte[]) - Static method in class loci.poi.util.LittleEndian
get an int value from the beginning of a byte array
getIntArray() - Method in class loci.plugins.util.RecordedImageProcessor
 
getIntArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Gets the integer array from an IIOMetadataNode.
getIntegration() - Method in class ome.xml.model.DetectorSettings
 
getIntElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Gets its integer value from an IIOMetadataNode.
getIntellectualProperty() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Returns the IntellectualProperty flag.
getInterleaved() - Method in class ome.xml.model.Pixels
 
getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
Returns the specified code-block in the current tile for the specified component (as a reference or copy).
getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec
Returns the specified code-block in the current tile for the specified component (as a reference or copy).
getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer
Returns the specified code-block in the current tile for the specified component (as a reference or copy).
getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler
Returns the specified code-block in the current tile for the specified component (as a reference or copy).
getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec
Returns the specified code-block in the current tile for the specified component (as a reference or copy).
getInternCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.
getInternCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Apply the component transformation associated with the current tile.
getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component, using the 'transfer type' defined in the block given as argument.
getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.
getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
Apply the inverse component transformation associated with the current tile.
getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler
Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.
getInternCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
Returns a block of image data containing the specifed rectangular area, in the specified component, as a reference to the internal buffer (see below).
getInterpolate() - Method in class loci.plugins.util.RecordedImageProcessor
 
getInterpolatedPixel(double, double) - Method in class loci.plugins.util.RecordedImageProcessor
 
getInts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of signed integers, one per channel.
getInts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of signed integers, one per channel.
getInts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of signed integers, one per channel.
getIris() - Method in class ome.xml.model.Objective
 
getItalic() - Method in class loci.poi.hssf.usermodel.HSSFFont
get whether to use italics or not
getIteration() - Method in class loci.poi.hssf.record.IterationRecord
get whether or not to iterate for calculations
getIterations() - Method in class loci.poi.hssf.record.CalcCountRecord
get the number of iterations to perform
getIterator() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
getIterator() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getIterator() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getJavaDate(double) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil
Given a excel date, converts it into a Date.
getJavaDate(double, boolean) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil
Given an Excel date with either 1900 or 1904 date windowing, converts it to a java.util.Date.
getJDKImageReaderWriterSPI(ServiceRegistry, String, boolean) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
getJustifyLast() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
Dunno.
getKerSpecType(int) - Method in class jj2000.j2k.wavelet.WTFilterSpec
Returns the type of specification for the filters in the specified component and tile.
getKey() - Method in class loci.formats.in.BaseZeissReader.Tag
 
getKey(int) - Method in class loci.formats.in.BaseZeissReader.Tag
Return the string corresponding to the given ID.
getKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation
 
getKey() - Method in class loci.plugins.prefs.Option
Gets the option's key name.
getKeyboardShortcut() - Method in class loci.poi.hssf.record.NameRecord
returns the keyboard shortcut
getKeyForValue(Object) - Method in class loci.poi.util.BinaryTree
Returns the key to which this map maps the specified value.
getKeywords() - Method in class loci.poi.hpsf.SummaryInformation
Returns the keywords (or null).
getLabel() - Method in class loci.plugins.prefs.Option
Gets label describing the option.
getLabel(String) - Method in class loci.plugins.prefs.OptionsList
Gets the label for the option with the given key.
getLabelColorRgb() - Method in class loci.poi.hssf.record.TickRecord
Get the label color rgb field for the Tick record.
getLabelFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
Get the label frequency field for the CategorySeriesAxis record.
getLabelID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelLocked(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelPosition() - Method in class loci.poi.hssf.record.TickRecord
Get the label position field for the Tick record.
getLabels() - Method in class loci.plugins.config.FlexWidgets
 
getLabels() - Method in interface loci.plugins.config.IFormatWidgets
 
getLabels() - Method in class loci.plugins.config.ND2Widgets
 
getLabels() - Method in class loci.plugins.config.PictWidgets
 
getLabels() - Method in class loci.plugins.config.QTWidgets
 
getLabels() - Method in class loci.plugins.config.SDTWidgets
 
getLabels() - Method in class loci.plugins.config.TiffDelegateWidgets
 
getLabelStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelText(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelText(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelTheC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelTheT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelTransform(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelVisible(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelX(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelX(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLabelY(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLabelY(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLabelY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLabelY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLandscape() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getLandscape() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the landscape mode.
getLaserFrequencyMultiplication(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserFrequencyMultiplication(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserFrequencyMultiplication(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserFrequencyMultiplication(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserLaserMedium(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserLaserMedium(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserLaserMedium(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserLaserMedium(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserMedium(String) - Method in class loci.formats.FormatReader
Retrieves an LaserMedium enumeration value for the given String.
getLaserMedium() - Method in class ome.xml.model.Laser
 
getLaserModel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserModel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserPockelCell(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserPockelCell(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserPockelCell(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserPockelCell(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserPower() - Method in class loci.formats.in.PrairieMetadata
Gets the laserPower_0 recorded in the configuration.
getLaserPower(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserPower(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserPower(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserPower(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserPulse(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserPulse(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserPulse(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserPulse(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserPump(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserPump(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserPump(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserPump(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserRepetitionRate(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserRepetitionRate(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserRepetitionRate(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserRepetitionRate(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserTuneable(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserTuneable(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserTuneable(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserTuneable(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserType(String) - Method in class loci.formats.FormatReader
Retrieves an LaserType enumeration value for the given String.
getLaserType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLaserWavelength(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLaserWavelength(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLaserWavelength(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLaserWavelength(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLast() - Method in class loci.formats.FilePattern
 
getLast() - Method in class loci.formats.FilePatternBlock
 
getLastAuthor() - Method in class loci.poi.hpsf.SummaryInformation
Returns the last author (or null).
getLastBodyBuf() - Method in class jj2000.j2k.codestream.writer.PktEncoder
Returns the buffer of the body of the last encoded packet.
getLastBodyLen() - Method in class jj2000.j2k.codestream.writer.PktEncoder
Returns the length of the body of the last encoded packet, in bytes.
getLastCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getLastCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow
gets the number of the last cell contained in this row PLUS ONE.
getLastChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getLastCol() - Method in class loci.poi.hssf.record.DimensionsRecord
get the last col number for the sheet
getLastCol() - Method in class loci.poi.hssf.record.RowRecord
get the logical col number for the last cell this row plus one (0 based index)
getLastColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord
get the last column this record defines formatting info for
getLastColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getLastColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getLastColumn() - Method in class loci.poi.hssf.record.MulBlankRecord
ending column (last cell this holds in the row)
getLastColumn() - Method in class loci.poi.hssf.record.MulRKRecord
ending column (last cell this holds in the row)
getLastColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference
 
getLastColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getLastMSOSPID() - Method in class loci.poi.ddf.EscherDgRecord
The last shape id used in this drawing group.
getLastName() - Method in class ome.xml.model.Experimenter
 
getLastPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getLastPrinted() - Method in class loci.poi.hpsf.SummaryInformation
Returns the last printed time (or null).
getLastRow() - Method in class loci.poi.hssf.record.DimensionsRecord
get the last row number for the sheet
getLastRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getLastRow() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getLastRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference
 
getLastRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getLastRowAdd1() - Method in class loci.poi.hssf.record.IndexRecord
 
getLastRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getLastRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet
gets the last row on the sheet
getLastSaveDateTime() - Method in class loci.poi.hpsf.SummaryInformation
Returns the last save time (or null).
getLatestVersion() - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.getLatestVersion() instead.
getLatestVersion() - Method in interface loci.formats.services.OMEXMLService
Retrieves the latest supported version of the OME-XML schema.
getLatestVersion() - Method in class loci.formats.services.OMEXMLServiceImpl
 
getLayers() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets layers
getLeaderCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getLeaderCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getLeaderCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLeaderCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLeafChildCount() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
getLeft() - Method in class loci.poi.hssf.usermodel.HSSFFooter
Get the left side of the footer.
getLeft() - Method in class loci.poi.hssf.usermodel.HSSFHeader
Get the left side of the header.
getLeft() - Method in class mdbtools.dbengine.sql.Condition
 
getLeft() - Method in class mdbtools.dbengine.sql.Equation
 
getLeft() - Method in class mdbtools.dbengine.sql.Join
 
getLeftBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the color to use for the left border
getLeftBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the palette index for the left border color
getLeftCol() - Method in class loci.poi.hssf.model.Sheet
 
getLeftCol() - Method in class loci.poi.hssf.record.WindowTwoRecord
get the leftmost column displayed in the window
getLeftCol() - Method in class loci.poi.hssf.usermodel.HSSFSheet
The left col in the visible view when the sheet is first viewed after opening it in a viewer
getLeftColumn() - Method in class loci.poi.hssf.record.PaneRecord
Get the left column field for the Pane record.
getLeftRowGutter() - Method in class loci.poi.hssf.record.GutsRecord
get the size of the gutter that appears at the left of the rows
getLeftToRight() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getLeftToRight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the left to right print order.
getLegacy(M) - Method in class loci.legacy.adapter.AbstractLegacyAdapter
 
getLegacy(M) - Method in interface loci.legacy.adapter.LegacyAdapter
Used to retrieve the legacy instance associated with a given modern instance.
getLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Returns the box length.
getLength() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getLength() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer
Returns the current length of the buffer, in bytes.
getLength() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
Returns the current length of the entire bit stream.
getLength() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
Returns the current length of the entire bit stream.
getLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
Returns the length of the header.
getLength() - Method in class loci.poi.hssf.record.RecordInputStream
 
getLength() - Method in class loci.poi.poifs.storage.RawDataBlock
 
getLength() - Method in class ome.xml.model.BinData
 
getLengths() - Method in class loci.formats.cache.CacheStrategy
 
getLengths() - Method in interface loci.formats.cache.ICacheStrategy
Gets the lengths of all the axes.
getLenRefSubexpression() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
 
getLensNA() - Method in class ome.xml.model.Objective
 
getLetter() - Method in class loci.formats.ResourceNamer
Returns a String representing a single letter (in the case where the class instance has been initialized with a resource count lower than 26) or a concatenation of two letters (if resource count is higher than 26).
getLevels(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec
Returns the decomposition number of levels in component 'n' and tile 't'.
getLH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
Returns the LH (vertical high-pass) child subband of this subband.
getLH() - Method in class jj2000.j2k.wavelet.Subband
Returns the LH (vertical high-pass) child subband of this subband.
getLH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
Returns the LH (vertical high-pass) child subband of this subband.
getLicenseCode() - Method in interface loci.formats.services.LuraWaveService
Retrieves the current license code as a string.
getLicenseCode() - Method in class loci.formats.services.LuraWaveServiceImpl
 
getLightEmittingDiodeID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightEmittingDiodeID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightEmittingDiodeID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightEmittingDiodeID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightEmittingDiodeLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightEmittingDiodeLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightEmittingDiodeLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightEmittingDiodeLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightEmittingDiodeManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightEmittingDiodeManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightEmittingDiodeManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightEmittingDiodeManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightEmittingDiodeModel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightEmittingDiodeModel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightEmittingDiodeModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightEmittingDiodeModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightEmittingDiodePower(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightEmittingDiodePower(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightEmittingDiodePower(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightEmittingDiodePower(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightEmittingDiodeSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightEmittingDiodeSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightEmittingDiodeSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightEmittingDiodeSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightPath() - Method in class ome.xml.model.Channel
 
getLightPathDichroicRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightPathDichroicRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightPathDichroicRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightPathDichroicRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightPathEmissionFilterRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightPathEmissionFilterRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightPathEmissionFilterRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightPathEmissionFilterRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightPathEmissionFilterRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightPathEmissionFilterRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightPathEmissionFilterRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightPathEmissionFilterRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightPathExcitationFilterRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightPathExcitationFilterRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightPathExcitationFilterRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightPathExcitationFilterRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightPathExcitationFilterRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightPathExcitationFilterRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightPathExcitationFilterRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightPathExcitationFilterRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightSource(int) - Method in class loci.tests.testng.Configuration
 
getLightSource(int) - Method in class ome.xml.model.Instrument
 
getLightSource() - Method in class ome.xml.model.LightSourceSettings
 
getLightSourceCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightSourceCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getLightSourceCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightSourceCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLightSourceSettings() - Method in class ome.xml.model.Channel
 
getLightSourceSettings(int) - Method in class ome.xml.model.MicrobeamManipulation
 
getLightSourceType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLightSourceType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLightSourceType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLightSourceType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLimit() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent
 
getLine(double, double, double, double) - Method in class loci.plugins.util.RecordedImageProcessor
 
getLineCap(String) - Method in class loci.formats.FormatReader
Retrieves an LineCap enumeration value for the given String.
getLineCap() - Method in class ome.xml.model.Shape
 
getLineColor() - Method in class loci.poi.hssf.record.LineFormatRecord
Get the line color field for the LineFormat record.
getLineCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the line count or 0 if the DocumentSummaryInformation does not contain a line count.
getLineFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineLocked(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineMarkerEnd(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineMarkerEnd(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineMarkerEnd(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineMarkerEnd(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineMarkerStart(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineMarkerStart(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineMarkerStart(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineMarkerStart(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLinePattern() - Method in class loci.poi.hssf.record.LineFormatRecord
Get the line pattern field for the LineFormat record.
getLinesPerFrame() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the lines per frame for this Frame.
getLineStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineStyle() - Method in class loci.poi.hssf.usermodel.HSSFShape
 
getLineStyleColor() - Method in class loci.poi.hssf.usermodel.HSSFShape
The color applied to the lines of this shape.
getLineText(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineText(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineTheC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineTheT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineTransform(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineVisible(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineWidth() - Method in class jj2000.j2k.util.MsgPrinter
Returns the line width that is used for formatting.
getLineWidth() - Method in class loci.poi.hssf.usermodel.HSSFShape
 
getLineX1(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineX1(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineX1(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineX1(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineX2(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineX2(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineX2(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineX2(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineY1(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineY1(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineY1(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineY1(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLineY2(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLineY2(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLineY2(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLineY2(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLink1() - Method in class loci.poi.hssf.record.ObjectLinkRecord
Get the link 1 field for the ObjectLink record.
getLink2() - Method in class loci.poi.hssf.record.ObjectLinkRecord
Get the link 2 field for the ObjectLink record.
getLinkedAnnotation(int) - Method in class ome.xml.model.Annotation
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Channel
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Dataset
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Experimenter
 
getLinkedAnnotation(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Image
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Pixels
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Plane
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Plate
 
getLinkedAnnotation(int) - Method in class ome.xml.model.PlateAcquisition
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Project
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Reagent
 
getLinkedAnnotation(int) - Method in class ome.xml.model.ROI
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Screen
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Well
 
getLinkedAnnotation(int) - Method in class ome.xml.model.WellSample
 
getLinkedChannel(int) - Method in class ome.xml.model.Annotation
 
getLinkedChannel(int) - Method in class ome.xml.model.FilterSet
 
getLinkedDataset(int) - Method in class ome.xml.model.Annotation
 
getLinkedDataset(int) - Method in class ome.xml.model.Experimenter
 
getLinkedDataset(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedDataset(int) - Method in class ome.xml.model.Image
 
getLinkedDataset(int) - Method in class ome.xml.model.Project
 
getLinkedDichroic() - Method in class ome.xml.model.FilterSet
 
getLinkedDichroic() - Method in class ome.xml.model.LightPath
 
getLinkedEmissionFilter(int) - Method in class ome.xml.model.FilterSet
 
getLinkedEmissionFilter(int) - Method in class ome.xml.model.LightPath
 
getLinkedExcitationFilter(int) - Method in class ome.xml.model.FilterSet
 
getLinkedExcitationFilter(int) - Method in class ome.xml.model.LightPath
 
getLinkedExperiment(int) - Method in class ome.xml.model.Experimenter
 
getLinkedExperiment() - Method in class ome.xml.model.Image
 
getLinkedExperimenter(int) - Method in class ome.xml.model.Annotation
 
getLinkedExperimenter() - Method in class ome.xml.model.Dataset
 
getLinkedExperimenter() - Method in class ome.xml.model.Experiment
 
getLinkedExperimenter(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedExperimenter() - Method in class ome.xml.model.Image
 
getLinkedExperimenter() - Method in class ome.xml.model.MicrobeamManipulation
 
getLinkedExperimenter() - Method in class ome.xml.model.Project
 
getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Annotation
 
getLinkedExperimenterGroup() - Method in class ome.xml.model.Dataset
 
getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Experimenter
 
getLinkedExperimenterGroup() - Method in class ome.xml.model.Image
 
getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Leader
 
getLinkedExperimenterGroup() - Method in class ome.xml.model.Project
 
getLinkedFilterSet() - Method in class ome.xml.model.Channel
 
getLinkedFilterSet(int) - Method in class ome.xml.model.Dichroic
 
getLinkedFilterSetEmissionFilter(int) - Method in class ome.xml.model.Filter
 
getLinkedFilterSetExcitationFilter(int) - Method in class ome.xml.model.Filter
 
getLinkedImage(int) - Method in class ome.xml.model.Annotation
 
getLinkedImage(int) - Method in class ome.xml.model.Dataset
 
getLinkedImage(int) - Method in class ome.xml.model.Experiment
 
getLinkedImage(int) - Method in class ome.xml.model.Experimenter
 
getLinkedImage(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedImage(int) - Method in class ome.xml.model.Instrument
 
getLinkedImage(int) - Method in class ome.xml.model.MicrobeamManipulation
 
getLinkedImage(int) - Method in class ome.xml.model.ROI
 
getLinkedImage() - Method in class ome.xml.model.WellSample
 
getLinkedInstrument() - Method in class ome.xml.model.Image
 
getLinkedLaser(int) - Method in class ome.xml.model.Pump
 
getLinkedLeader(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedLightPath(int) - Method in class ome.xml.model.Dichroic
 
getLinkedLightPathEmissionFilter(int) - Method in class ome.xml.model.Filter
 
getLinkedLightPathExcitationFilter(int) - Method in class ome.xml.model.Filter
 
getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Experimenter
 
getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Image
 
getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.ROI
 
getLinkedPixels(int) - Method in class ome.xml.model.Annotation
 
getLinkedPlane(int) - Method in class ome.xml.model.Annotation
 
getLinkedPlate(int) - Method in class ome.xml.model.Annotation
 
getLinkedPlate(int) - Method in class ome.xml.model.Screen
 
getLinkedPlateAcquisition(int) - Method in class ome.xml.model.Annotation
 
getLinkedPlateAcquisition(int) - Method in class ome.xml.model.WellSample
 
getLinkedProject(int) - Method in class ome.xml.model.Annotation
 
getLinkedProject(int) - Method in class ome.xml.model.Dataset
 
getLinkedProject(int) - Method in class ome.xml.model.Experimenter
 
getLinkedProject(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedPump() - Method in class ome.xml.model.Laser
 
getLinkedReagent(int) - Method in class ome.xml.model.Annotation
 
getLinkedReagent() - Method in class ome.xml.model.Well
 
getLinkedROI(int) - Method in class ome.xml.model.Annotation
 
getLinkedROI(int) - Method in class ome.xml.model.Image
 
getLinkedROI(int) - Method in class ome.xml.model.MicrobeamManipulation
 
getLinkedScreen(int) - Method in class ome.xml.model.Annotation
 
getLinkedScreen(int) - Method in class ome.xml.model.Plate
 
getLinkedWell(int) - Method in class ome.xml.model.Annotation
 
getLinkedWell(int) - Method in class ome.xml.model.Reagent
 
getLinkedWellSample(int) - Method in class ome.xml.model.Annotation
 
getLinkedWellSample(int) - Method in class ome.xml.model.Image
 
getLinkedWellSample(int) - Method in class ome.xml.model.PlateAcquisition
 
getLinksDirty() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns true if the custom links are dirty.
getLinkType() - Method in class loci.poi.hssf.record.LinkedDataRecord
Get the link type field for the LinkedData record.
getListAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getListAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getListAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getListAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getListAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getListAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getListAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getListAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getListAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getListAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getListAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getListAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getListAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getListAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getListAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getListAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getListAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getListAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getListAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getListAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getListAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getListAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getListAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getListAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getListAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getListAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getListAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getListAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getListAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
Returns the LL child subband of this subband.
getLL() - Method in class jj2000.j2k.wavelet.Subband
Returns the LL child subband of this subband.
getLL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
Returns the LL child subband of this subband.
getLoadList(int[]) - Method in class loci.formats.cache.CacheStrategy
 
getLoadList(int[]) - Method in interface loci.formats.cache.ICacheStrategy
Gets the indices of the objects to cache, surrounding the object at the given position.
getLoc() - Method in class loci.poi.hssf.model.Sheet
Returns the location pointer to the first record to look for when adding rows/values
getLocalFilePath(int) - Method in class loci.formats.ome.OmeisImporter
Deprecated.
Gets path to original file corresponding to the given file ID.
getLocalPixelsPath(int) - Method in class loci.formats.ome.OmeisImporter
Deprecated.
Gets path to Pixels file corresponding to the given pixels ID.
getLocation() - Method in class loci.plugins.in.ImporterOptions
 
getLocationFromResourceName(Location, String, int, String) - Method in class loci.formats.ResourceNamer
Creates a new Location instance using the provided parent path and child node name.
getLocationInfo() - Method in class loci.plugins.in.ImporterOptions
 
getLocations() - Method in class loci.plugins.in.ImporterOptions
 
getLocked() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get whether the cell's using this style are to be locked
getLocked() - Method in class ome.xml.model.Shape
 
getLogger(Class) - Static method in class loci.poi.util.POILogFactory
Get a logger, based on a class name
getLogger(String) - Static method in class loci.poi.util.POILogFactory
Get a logger, based on a String
getLong(byte[], int) - Static method in class loci.poi.util.LittleEndian
get a long value from a byte array
getLong(byte[]) - Static method in class loci.poi.util.LittleEndian
get a long value from the beginning of a byte array
getLongAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getLongAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getLongAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getLongAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLongAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLongAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getLongAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getLongAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLongAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLongAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getLongAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getLongAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLongAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLongAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getLongAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getLongAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getLongAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLongAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getLongAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getLongAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLongAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLongAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getLongAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getLongAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLongAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLongAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getLongAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getLongAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLongAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLongAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata
 
getLongAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata
 
getLongAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getLongAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools
Convers an Index16ColorModel to a 2D short array.
getLookupTable() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the color lookup table stored in the file, or null if a lookup table is not present.
getLossless() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets lossless.
getLossless() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets encodingRate
getLotNumber() - Method in class ome.xml.model.ManufacturerSpec
 
getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.
getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.
getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.
getLPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
Returns the equivalent low-pass synthesis waveform of a cascade of filters, given the syhthesis waveform of the previous stage.
getLUT() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
Return the LUT.
getLutNames() - Method in class loci.formats.in.LeicaHandler
 
getLutUpdateMode() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMagnification(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getMagnification() - Method in class loci.formats.in.ND2Handler
 
getMagnification() - Method in class loci.formats.in.PrairieMetadata.Frame
Extracts the magnification from the objective lens string.
getMainDefDecompType() - Method in class jj2000.j2k.wavelet.WTDecompSpec
Returns the main default decomposition type.
getMainDefLevels() - Method in class jj2000.j2k.wavelet.WTDecompSpec
Returns the main default decomposition number of levels.
getMajorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord
Get the major increment field for the ValueRange record.
getMajorTickType() - Method in class loci.poi.hssf.record.TickRecord
Get the major tick type field for the Tick record.
getMajorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Get the major unit field for the AxisOptions record.
getMajorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Get the major unit value field for the AxisOptions record.
getManager() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the manager (or null).
getManufacturer() - Method in class ome.xml.model.ManufacturerSpec
 
getMap() - Method in class loci.formats.tools.AmiraParameters
 
getMappedFile(String) - Static method in class loci.common.Location
Gets the random access handle for the given id.
getMappedFile(String) - Static method in class ome.scifio.io.Location
Gets the random access handle for the given id.
getMappedId(String) - Static method in class loci.common.Location
Gets the actual filename on disk for the given id.
getMappedId(String) - Static method in class ome.scifio.io.Location
Gets the actual filename on disk for the given id.
getMargin(short) - Method in class loci.poi.hssf.model.Sheet
Gets the size of the margin in inches.
getMargin() - Method in class loci.poi.hssf.record.BottomMarginRecord
Get the margin field for the BottomMargin record.
getMargin() - Method in class loci.poi.hssf.record.LeftMarginRecord
Get the margin field for the LeftMargin record.
getMargin() - Method in interface loci.poi.hssf.record.Margin
Get the margin field for the Margin.
getMargin() - Method in class loci.poi.hssf.record.RightMarginRecord
Get the margin field for the RightMargin record.
getMargin() - Method in class loci.poi.hssf.record.TopMarginRecord
Get the margin field for the TopMargin record.
getMargin(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Gets the size of the margin in inches.
getMarginBottom() - Method in class loci.poi.hssf.usermodel.HSSFTextbox
Gets the bottom margin within the textbox.
getMarginLeft() - Method in class loci.poi.hssf.usermodel.HSSFTextbox
 
getMarginRight() - Method in class loci.poi.hssf.usermodel.HSSFTextbox
 
getMargins() - Method in class loci.poi.hssf.model.Sheet
Returns the array of margins.
getMarginTop() - Method in class loci.poi.hssf.usermodel.HSSFTextbox
 
getMarker(String) - Method in class loci.formats.FormatReader
Retrieves an Marker enumeration value for the given String.
getMarker() - Method in class loci.poi.ddf.EscherBitmapBlip
 
getMarkerEnd() - Method in class ome.xml.model.Line
 
getMarkerEnd() - Method in class ome.xml.model.Polyline
 
getMarkerStart() - Method in class ome.xml.model.Line
 
getMarkerStart() - Method in class ome.xml.model.Polyline
 
getMask() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMask() - Method in class ome.xml.model.BinData
 
getMaskArray() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMaskFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskHeight(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskHeight(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskHeight(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskHeight(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskLocked(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskText(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskText(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskTheC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskTheT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskTransform(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskVisible(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskX(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskX(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMaskY(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMaskY(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMaskY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMaskY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMax() - Method in class jj2000.j2k.IntegerSpec
Get the maximum value of each tile-component
getMax() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
Returns the number of bytes remaining available in the bit stream.
getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
Returns the number of bytes remaining available in the bit stream.
getMaxCBlkHeight() - Method in class jj2000.j2k.entropy.CBlkSizeSpec
Returns the maximum code-block's height
getMaxCBlkWidth() - Method in class jj2000.j2k.entropy.CBlkSizeSpec
Returns the maximum code-block's width
getMaxChange() - Method in class loci.poi.hssf.record.DeltaRecord
get the maximum change
getMaxCompHeight() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getMaxCompImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Return the maximum height among all components
getMaxCompImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Return the maximum width among all components
getMaxCompWidth() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getMaxFieldCount(Integer) - Static method in class loci.formats.FormatTools
 
getMaximumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord
Get the maximum axis value field for the ValueRange record.
getMaximumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Get the maximum category field for the AxisOptions record.
getMaximumFieldCount() - Method in class ome.xml.model.PlateAcquisition
 
getMaximumSize() - Method in class loci.formats.gui.CacheIndicator
 
getMaxInComp(int) - Method in class jj2000.j2k.IntegerSpec
Get the maximum value of each tile for specified component
getMaxInTile(int) - Method in class jj2000.j2k.IntegerSpec
Get the maximum value of each component in specified tile
getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
Returns the maximum number of magnitude bits in any subband in the current tile.
getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
Returns the maximum number of magnitude bits in any subband of the current tile.
getMaxThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMaxTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the horizontal index of the rightmost column of tiles.
getMaxTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the vertical index of the bottom row of tiles.
getMaxValue() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getMaxX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the X coordinate of the column immediatetely to the right of the rightmost column of the image.
getMaxY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the Y coordinate of the row immediately below the bottom row of the image.
getMD5() - Method in class loci.tests.testng.Configuration
 
getMedium(String) - Method in class loci.formats.FormatReader
Retrieves an Medium enumeration value for the given String.
getMedium() - Method in class ome.xml.model.ObjectiveSettings
 
getMemoFile(String) - Method in class loci.formats.Memoizer
Constructs a File object from setId string.
getMemory() - Method in class loci.tests.testng.Configuration
 
getMemoryUsage() - Method in class loci.plugins.in.ImportProcess
Gets a projection of required memory in bytes.
getMergeCells() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether to merge cells
getMergedRegionAt(int) - Method in class loci.poi.hssf.model.Sheet
 
getMergedRegionAt(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
gets the region at a particular index
getMessage() - Method in enum loci.plugins.in.ImportStep
 
getMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
Returns the current IIOMetadata object.
getMetadata() - Method in class loci.formats.FormatReader
Deprecated. 
getMetadata() - Method in interface loci.formats.IFormatReader
Deprecated.
Use #getGlobalMetadata() or #getSeriesMetadata() instead.
getMetadata() - Method in class loci.formats.ImageReader
Deprecated. 
getMetadata() - Method in class loci.formats.in.ND2Handler
 
getMetadata() - Method in class loci.formats.ReaderWrapper
Deprecated. 
getMetadataFile() - Method in class ome.xml.model.BinaryOnly
 
getMetadataLevel() - Method in class loci.formats.in.DefaultMetadataOptions
 
getMetadataLevel() - Method in interface loci.formats.in.MetadataOptions
 
getMetadataOnly() - Method in class ome.xml.model.Pixels
 
getMetadataOptions() - Method in class loci.formats.DelegateReader
 
getMetadataOptions() - Method in class loci.formats.FormatReader
 
getMetadataOptions() - Method in class loci.formats.ImageReader
 
getMetadataOptions() - Method in interface loci.formats.IMetadataConfigurable
 
getMetadataOptions() - Method in class loci.formats.ReaderWrapper
 
getMetadataRetrieve() - Method in class loci.formats.FormatWriter
 
getMetadataRetrieve() - Method in interface loci.formats.IFormatWriter
Retrieves the current metadata retrieval object for this writer.
getMetadataRetrieve() - Method in class loci.formats.ImageWriter
 
getMetadataRetrieve() - Method in class loci.formats.WriterWrapper
 
getMetadataStore() - Method in class loci.formats.FileStitcher
 
getMetadataStore() - Method in class loci.formats.FormatReader
 
getMetadataStore() - Method in interface loci.formats.IFormatReader
Retrieves the current metadata store for this reader.
getMetadataStore() - Method in class loci.formats.ImageReader
 
getMetadataStore() - Method in class loci.formats.Memoizer
 
getMetadataStore() - Method in class loci.formats.ReaderWrapper
 
getMetadataStoreForConversion() - Method in class loci.formats.in.OMETiffReader
Returns a MetadataStore that is populated in such a way as to be usable by an IFormatWriter.
getMetadataStoreForDisplay() - Method in class loci.formats.in.OMETiffReader
Returns a MetadataStore that is populated in such a way as to produce valid OME-XML.
getMetadataStoreRoot() - Method in class loci.formats.FileStitcher
 
getMetadataStoreRoot() - Method in class loci.formats.FormatReader
 
getMetadataStoreRoot() - Method in interface loci.formats.IFormatReader
Retrieves the current metadata store's root object.
getMetadataStoreRoot() - Method in class loci.formats.ImageReader
 
getMetadataStoreRoot() - Method in class loci.formats.ReaderWrapper
 
getMetadataString(String) - Method in class loci.plugins.in.ImporterMetadata
Returns a string with each key/value pair on its own line.
getMetadataType() - Method in enum loci.formats.tiff.PhotoInterp
Retrieves the metadata type of the photometric interpretation.
getMetadataValue(String) - Method in class loci.formats.FormatReader
 
getMetadataValue(String) - Method in interface loci.formats.IFormatReader
Obtains the specified metadata field's value for the current file.
getMetadataValue(String) - Method in class loci.formats.ImageReader
 
getMetadataValue(String) - Method in class loci.formats.ReaderWrapper
 
getMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
getMethod() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
Returns the method to define the color space.
getMethodForMQLengthCalc() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets methodForMQLengthCalc
getMethodForMQTermination() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets methodForMQTermination
getMethodStack() - Method in class loci.plugins.util.BFVirtualStack
 
getMethodStack() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMicrobeamManipulation(int) - Method in class ome.xml.model.Experiment
 
getMicrobeamManipulation() - Method in class ome.xml.model.LightSourceSettings
 
getMicrobeamManipulationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationDescription(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationDescription(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationDescription(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationDescription(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationExperimenterRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationExperimenterRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationExperimenterRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationExperimenterRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationROIRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationROIRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationROIRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationROIRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationROIRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationROIRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationROIRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationROIRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicrobeamManipulationType(String) - Method in class loci.formats.FormatReader
Retrieves an MicrobeamManipulationType enumeration value for the given String.
getMicrobeamManipulationType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicrobeamManipulationType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getMicrobeamManipulationType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicrobeamManipulationType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicronsPerPixelX() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the microns per pixel along X for this Frame.
getMicronsPerPixelY() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the microns per pixel along Y for this Frame.
getMicroscope() - Method in class ome.xml.model.Instrument
 
getMicroscopeLotNumber(int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicroscopeLotNumber(int) - Method in class loci.formats.meta.DummyMetadata
 
getMicroscopeLotNumber(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicroscopeLotNumber(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicroscopeManufacturer(int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicroscopeManufacturer(int) - Method in class loci.formats.meta.DummyMetadata
 
getMicroscopeManufacturer(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicroscopeManufacturer(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicroscopeModel(int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicroscopeModel(int) - Method in class loci.formats.meta.DummyMetadata
 
getMicroscopeModel(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicroscopeModel(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicroscopeSerialNumber(int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicroscopeSerialNumber(int) - Method in class loci.formats.meta.DummyMetadata
 
getMicroscopeSerialNumber(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicroscopeSerialNumber(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMicroscopeType(String) - Method in class loci.formats.FormatReader
Retrieves an MicroscopeType enumeration value for the given String.
getMicroscopeType(int) - Method in class loci.formats.meta.AggregateMetadata
 
getMicroscopeType(int) - Method in class loci.formats.meta.DummyMetadata
 
getMicroscopeType(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getMicroscopeType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getMiddleName() - Method in class ome.xml.model.Experimenter
 
getMillisFromTicks(long, long) - Static method in class loci.common.DateTools
Converts from two-word tick representation to milliseconds.
getMillisFromTicks(long, long) - Static method in class ome.scifio.common.DateTools
Converts from two-word tick representation to milliseconds.
getMIMEType() - Method in class ome.xml.model.BinaryFile
 
getMin() - Method in class jj2000.j2k.IntegerSpec
Get the minimum value of each tile-component
getMin() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMinimumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord
Get the minimum axis value field for the ValueRange record.
getMinimumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Get the minimum category field for the AxisOptions record.
getMinimumSize() - Method in class loci.formats.gui.CacheIndicator
 
getMinInComp(int) - Method in class jj2000.j2k.IntegerSpec
Get the minimum value of each tile for specified component
getMinInTile(int) - Method in class jj2000.j2k.IntegerSpec
Get the minimum value of each component in specified tile
getMinMaxCalculator() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getMinMaxStore() - Method in class loci.formats.MinMaxCalculator
Retrieves the current active min-max store for the calculator.
getMinorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord
Get the minor increment field for the ValueRange record.
getMinorTickType() - Method in class loci.poi.hssf.record.TickRecord
Get the minor tick type field for the Tick record.
getMinorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Get the minor unit field for the AxisOptions record.
getMinorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Get the minor unit value field for the AxisOptions record.
getMinorVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
Returns the minor version of this file type box.
getMinThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMinTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the horizontal index of the leftmost column of tiles.
getMinTileX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getMinTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the vertical index of the uppermost row of tiles.
getMinTileY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getMinX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the X coordinate of the leftmost column of the image.
getMinX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets minX
getMinX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getMinY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the X coordinate of the uppermost row of the image.
getMinY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets minY
getMinY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getMMClipCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the mmclip count or 0 if the DocumentSummaryInformation does not contain a mmclip count.
getModalities() - Method in class loci.formats.in.ND2Handler
 
getModality(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getMode() - Method in class loci.poi.hssf.record.RefModeRecord
get the reference mode to use (HSSF uses/assumes A1)
getModel() - Method in class ome.xml.model.ManufacturerSpec
 
getModelObject(String) - Method in interface ome.xml.model.OMEModel
 
getModelObject(String) - Method in class ome.xml.model.OMEModelImpl
 
getModelObjects() - Method in interface ome.xml.model.OMEModel
 
getModelObjects() - Method in class ome.xml.model.OMEModelImpl
 
getModern(L) - Method in class loci.legacy.adapter.AbstractLegacyAdapter
 
getModern(L) - Method in interface loci.legacy.adapter.LegacyAdapter
Used to retrieve the modern instance associated with a given legacy instance.
getModuloAlongC(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService
Retrieve the ModuloAlongC annotation in the given Image in the given OME-XML metadata object.
getModuloAlongC(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getModuloAlongT(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService
Retrieve the ModuloAlongT annotation in the given Image in the given OME-XML metadata object.
getModuloAlongT(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getModuloAlongZ(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService
Retrieve the ModuloAlongZ annotation in the given Image in the given OME-XML metadata object.
getModuloAlongZ(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getModuloC() - Method in class loci.formats.FormatReader
 
getModuloC() - Method in interface loci.formats.IFormatReader
 
getModuloC() - Method in class loci.formats.ImageReader
 
getModuloC() - Method in class loci.formats.ReaderWrapper
 
getModuloT() - Method in class loci.formats.FormatReader
 
getModuloT() - Method in interface loci.formats.IFormatReader
 
getModuloT() - Method in class loci.formats.ImageReader
 
getModuloT() - Method in class loci.formats.ReaderWrapper
 
getModuloZ() - Method in class loci.formats.FormatReader
 
getModuloZ() - Method in interface loci.formats.IFormatReader
 
getModuloZ() - Method in class loci.formats.ImageReader
 
getModuloZ() - Method in class loci.formats.ReaderWrapper
 
getMsgLogger() - Static method in class jj2000.j2k.util.FacilityManager
Returns the MsgLogger registered with the current thread (the thread that calls this method).
getMsgLogger(Thread) - Static method in class jj2000.j2k.util.FacilityManager
Returns the MsgLogger registered with the thread 't' (the thread that calls this method).
getNA(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getName() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Returns the name of the tag, as it will appear in image metadata.
getName(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Returns the XML tag name defined in JP2 XML xsd/dtd for the box with the provided type.
getName() - Method in class loci.common.Location
Returns the name of this file, i.e.
getName() - Method in enum loci.formats.codec.JPEG2000BoxType
Returns the name of the box type.
getName() - Method in enum loci.formats.codec.JPEG2000SegmentMarker
Returns the name of the segment marker.
getName(int) - Method in class loci.formats.gui.TwoChannelColorSpace
 
getName() - Method in enum loci.formats.tiff.PhotoInterp
Retrieves the given name of the photometric interpretation.
getName() - Method in class loci.poi.ddf.EscherBSERecord
The length in characters of the blip name.
getName() - Method in class loci.poi.ddf.EscherProperty
 
getName() - Method in class loci.poi.hpsf.CustomProperty
Gets the property's name.
getName() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getName() - Method in class loci.poi.hssf.record.StyleRecord
get the style's name
getName() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent
 
getName() - Method in interface loci.poi.poifs.filesystem.Entry
get the name of the Entry
getName() - Method in class loci.poi.poifs.filesystem.EntryNode
get the name of the Entry
getName() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent
 
getName() - Method in class loci.poi.poifs.property.Property
Get the name of this property
getName() - Method in interface mdbtools.dbengine.Table
 
getName() - Method in class ome.metakit.Column
Retrieve the name of the column.
getName() - Method in class ome.scifio.io.Location
Returns the name of this file, i.e.
getName() - Method in class ome.xml.model.Channel
 
getName() - Method in class ome.xml.model.Dataset
 
getName() - Method in class ome.xml.model.ExperimenterGroup
 
getName() - Method in class ome.xml.model.Image
 
getName() - Method in class ome.xml.model.Plate
 
getName() - Method in class ome.xml.model.PlateAcquisition
 
getName() - Method in class ome.xml.model.Project
 
getName() - Method in class ome.xml.model.Reagent
 
getName() - Method in class ome.xml.model.ROI
 
getName() - Method in class ome.xml.model.Screen
 
getName() - Method in class ome.xml.model.StageLabel
 
getNameAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
gets the Named range
getNameDefinition() - Method in class loci.poi.hssf.record.NameRecord
gets the definition, reference (Formula)
getNameIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
gets the named range index by his name Note:Excel named ranges are case-insensitive and this method performs a case-insensitive search.
getNameLength() - Method in class loci.poi.hssf.record.StyleRecord
if this is a user defined record get the length of the style name
getNameName() - Method in class loci.poi.hssf.usermodel.HSSFName
gets the name of the named range
getNameName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
gets the named range name
getNamepos() - Method in class loci.poi.hssf.model.WorkbookRecordList
Returns the namepos.
getNameRecord(int) - Method in class loci.poi.hssf.model.Workbook
gets the name record
getNamespace() - Method in class ome.xml.model.Annotation
 
getNamespace() - Method in class ome.xml.model.ROI
 
getNameText() - Method in class loci.poi.hssf.record.NameRecord
gets the name
getNameTextLength() - Method in class loci.poi.hssf.record.NameRecord
gets the name length
getNamingConvention(String) - Method in class loci.formats.FormatReader
Retrieves an NamingConvention enumeration value for the given String.
getNANData() - Method in class loci.poi.hssf.record.RecordInputStream
 
getNativeDataType() - Method in class loci.formats.ChannelFiller
 
getNativeDataType() - Method in class loci.formats.ChannelMerger
 
getNativeDataType() - Method in class loci.formats.ChannelSeparator
 
getNativeDataType() - Method in class loci.formats.FormatHandler
 
getNativeDataType() - Method in interface loci.formats.IFormatHandler
Returns the native data type of image planes for this reader, as returned by IFormatReader.openPlane(int, int, int, int, int) or IFormatWriter.savePlane(int, java.lang.Object).
getNativeDataType() - Method in class loci.formats.ImageReader
 
getNativeDataType() - Method in class loci.formats.ImageWriter
 
getNativeDataType() - Method in class loci.formats.in.BIFormatReader
 
getNativeDataType() - Method in class loci.formats.in.TextReader
 
getNativeDataType() - Method in class loci.formats.MinMaxCalculator
 
getNativeDataType() - Method in class loci.formats.out.ImageIOWriter
 
getNativeDataType() - Method in class loci.formats.out.LegacyQTWriter
 
getNativeDataType() - Method in class loci.formats.ReaderWrapper
 
getNativeDataType() - Method in class loci.formats.TileStitcher
 
getNativeDataType() - Method in class loci.formats.WriterWrapper
 
getNativeDataType() - Method in class loci.plugins.util.ImageProcessorReader
 
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Creates an IIOMetadataNode from this box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
Creates an IIOMetadataNode from this channel definition box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
Creates an IIOMetadataNode from this color specification box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
Creates an IIOMetadataNode from this component mapping box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
Creates an IIOMetadataNode from this data entry URL box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
Creates an IIOMetadataNode from this file type box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Creates an IIOMetadataNode from this image header box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
creates an IIOMetadataNode from this palette box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
Creates an IIOMetadataNode from this resolution box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox
Creates an IIOMetadataNode from this signature box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
Creates an IIOMetadataNode from this UUID box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
Creates an IIOMetadataNode from this UUID list box.
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox
Creates an IIOMetadataNode from this XML box.
getNativeNodeForSimpleBox() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Creates an IIOMetadataNode from this box.
getNChannels() - Method in class loci.plugins.util.RecordedImageProcessor
 
getNDFilter() - Method in class ome.xml.model.Channel
 
getNewCOC() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of COC
getNewCOD() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of COD
getNewCOM() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of COM
getNewCRG() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of CRG
getNewPOC() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of POC
getNewQCC() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of QCC
getNewQCD() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of QCD
getNewRGN() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of RGN
getNewSIZ() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of SIZ
getNewSOT() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns a new instance of SOT
getNextChild() - Method in interface loci.poi.poifs.property.Child
Get the next Child, if any
getNextChild() - Method in class loci.poi.poifs.property.Property
Get the next Child, if any
getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
 
getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
 
getNextCodeBlock(int, CBlkRateDistStats) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc
Returns the next coded code-block in the current tile for the specified component, as a copy (see below).
getNextCodeBlock(int, CBlkRateDistStats) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
Returns the next coded code-block in the current tile for the specified component, as a copy (see below).
getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc
Returns the next code-block in the current tile for the specified component, as a copy (see below).
getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
Returns the next code-block in the current tile for the specified component, as a copy (see below).
getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler
This function gets a datablk from the entropy coder.
getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc
Returns the next code-block in the current tile for the specified component, as a copy (see below).
getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the next code-block in the current tile for the specified component, as a copy (see below).
getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc
Returns the next code-block in the current tile for the specified component.
getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
Returns the next code-block in the current tile for the specified component.
getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler
This function gets a datablk from the entropy coder.
getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc
Returns the next code-block in the current tile for the specified component.
getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the next code-block in the current tile for the specified component.
getNextResLevel() - Method in class jj2000.j2k.wavelet.Subband
Returns the first leaf subband element in the next higher resolution level.
getNextRow() - Method in class loci.poi.hssf.model.Sheet
get the NEXT RowRecord (from LOC).
getNextSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getNextValueRecord() - Method in class loci.poi.hssf.model.Sheet
get the NEXT value record (from LOC).
getNoColor() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getNoColor() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the black and white setting.
getNominalMagnification() - Method in class ome.xml.model.Objective
 
getNomRangeBits(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the number of bits corresponding to the nominal range of the data in the specified component.
getNomRangeBits(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component and in the current tile.
getNomRangeBits(int) - Method in interface jj2000.j2k.image.ImgData
Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the image data in the specified component.
getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the image data in the specified component.
getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.
getNomRangeBits(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
Returns the number of bits corresponding to the nominal range of the data in the specified component.
getNomRangeBits(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.
getNomRangeBits(int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer
Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.
getNomRangeBits(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec
Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.
getNomRangeBits(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.
getNomTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the nominal tile height
getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the nominal width of the tiles in the reference grid.
getNomTileHeight() - Method in interface jj2000.j2k.image.ImgData
Returns the nominal tiles height
getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the nominal tiles height
getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the nominal tiles height
getNomTileHeight() - Method in class jj2000.j2k.image.input.ImgReader
Returns the nominal tiles height
getNomTileHeight() - Method in class jj2000.j2k.image.Tiler
Returns the nominal width of the tiles in the reference grid.
getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the nominal height of tiles
getNomTileHeight() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the nominal tiles height
getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the nominal tiles height
getNomTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the nominal tile width
getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the nominal width of the tiles in the reference grid.
getNomTileWidth() - Method in interface jj2000.j2k.image.ImgData
Returns the nominal tiles width
getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the nominal tiles width
getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the nominal tiles width
getNomTileWidth() - Method in class jj2000.j2k.image.input.ImgReader
Returns the nominal tiles width
getNomTileWidth() - Method in class jj2000.j2k.image.Tiler
Returns the nominal width of the tiles in the reference grid.
getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the nominal width of tiles
getNomTileWidth() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the nominal tiles width
getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the nominal tiles width
getNonThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser
Returns non-thumbnail IFDs.
getNoOrientation() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getNoOrientation() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the no orientation.
getNOptPoints() - Method in class jj2000.j2k.entropy.encoder.LayersInfo
Returns the number of layers to optimize, or optimization points, as specified by this object.
getNormalZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord
get the zoom magnification in normal view
getNoROIDescaling() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
Gets noROIDescaling
getNoteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the note count or 0 if the DocumentSummaryInformation does not contain a note count.
getNoteRecord() - Method in class loci.poi.hssf.model.CommentShape
Return the NoteRecord holding the comment attributes
getNotes() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getNotes() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the print notes.
getNoWlzMsg() - Method in interface loci.formats.services.WlzService
Gets the text string for when Woolz has not been found.
getNoWlzMsg() - Method in class loci.formats.services.WlzServiceImpl
 
getNumAreas() - Method in class loci.poi.hssf.record.MergeCellsRecord
get the number of merged areas.
getNumAxis() - Method in class loci.poi.hssf.record.AxisUsedRecord
Get the num axis field for the AxisUsed record.
getNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Returns the integer used to represent the tag.
getNumber(String) - Method in class loci.formats.NumberFilter
Gets numbers filling the asterisk positions.
getNumberOfBuiltinBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat
get the number of builtin and reserved builtinFormats
getNumberOfElementsInArray() - Method in class loci.poi.ddf.EscherArrayProperty
 
getNumberOfElementsInMemory() - Method in class loci.poi.ddf.EscherArrayProperty
 
getNumberOfExpressionTokens() - Method in class loci.poi.hssf.record.FormulaRecord
get the size of the stack
getNumberOfFontRecords() - Method in class loci.poi.hssf.model.Workbook
gets the number of font records
getNumberOfFonts() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
get the number of fonts in the font table
getNumberOfInfoRecsForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord
 
getNumberOfNames() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
gets the total number of named ranges in the workboko
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AddPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ConcatPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.DividePtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.EqualPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncVarPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg
Get the number of operands for the Less than operator
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessThanPtg
Get the number of operands for the Less than operator
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.OperationPtg
The number of operands expected by the operations
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PercentPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PowerPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.RangePtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.SubtractPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnionPtg
 
getNumberOfSheets() - Method in class loci.poi.hssf.record.SupBookRecord
 
getNumberOfSheets() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
get the number of spreadsheets in the workbook (this will be three after serialization)
getNumBreaks() - Method in class loci.poi.hssf.record.PageBreakRecord
 
getNumBubbleValues() - Method in class loci.poi.hssf.record.SeriesRecord
Get the num bubble values field for the Series record.
getNumCategories() - Method in class loci.poi.hssf.record.SeriesRecord
Get the num categories field for the Series record.
getNumCellOffsets() - Method in class loci.poi.hssf.record.DBCellRecord
get the number of cell offsets in the celloffset array
getNumCellStyles() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
get the number of styles the workbook contains
getNumCodedBytes() - Method in class jj2000.j2k.entropy.encoder.MQCoder
Returns the number of bytes that are necessary from the compressed output stream to decode all the symbols that have been coded this far.
getNumColumnBreaks() - Method in class loci.poi.hssf.model.Sheet
Returns the number of column page breaks
getNumColumns() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
getNumColumns() - Method in class loci.poi.hssf.record.MulBlankRecord
get the number of columns this contains (last-first +1)
getNumColumns() - Method in class loci.poi.hssf.record.MulRKRecord
get the number of columns this contains (last-first +1)
getNumCOM() - Method in class jj2000.j2k.codestream.HeaderInfo
Returns the number of found COM marker segments
getNumComp() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
Return the number of color components.
getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Returns the number of image components.
getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets the number of components
getNumComponents() - Method in class loci.formats.gui.TwoChannelColorSpace
 
getNumComps() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the number of components in the image.
getNumComps() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the number of components in the image.
getNumComps() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the number of components in the image.
getNumComps() - Method in interface jj2000.j2k.image.ImgData
Returns the number of components in the image.
getNumComps() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the number of components in the image.
getNumComps() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the number of components in the image.
getNumComps() - Method in class jj2000.j2k.image.input.ImgReader
Returns the number of components in the image.
getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the number of components in the image.
getNumComps() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the number of components in the image.
getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the number of components in the image.
getNumCtxts() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
Returns the number of contexts in the arithmetic coder.
getNumCtxts() - Method in class jj2000.j2k.entropy.encoder.MQCoder
Returns the number of contexts in the arithmetic coder.
getNumDbcells() - Method in class loci.poi.hssf.record.IndexRecord
 
getNumDecompositionLevels() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets numDecompositionLevels.
getNumEntries() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
Return the number of palette entries.
getNumerator() - Method in class loci.formats.tiff.TiffRational
Gets this number's numerator.
getNumerator() - Method in class loci.poi.hssf.record.SCLRecord
Get the numerator field for the SCL record.
getNumericalAperture() - Method in class loci.formats.in.ND2Handler
 
getNumericCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell
get the value of the cell as a number.
getNumericFields(GenericDialog) - Static method in class loci.plugins.util.WindowTools
 
getNumExFormats() - Method in class loci.poi.hssf.model.Workbook
get the number of ExtendedFormat records contained in this workbook.
getNumFoundMarkSeg() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the number of found marker segments in the current header.
getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC
 
getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD
 
getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
Returns the number of guard bits used by this quantizer in the given tile-component.
getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
Returns the number of guard bits used by this quantizer in the given tile-component.
getNumIdClusters() - Method in class loci.poi.ddf.EscherDggRecord
Number of id clusters + 1
getNumImages() - Method in class com.sun.media.imageio.stream.RawImageInputStream
Retrieves the number of images in the ImageInputStream.
getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
Overrides the method defined in the superclass.
getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
Overrides the method defined in the superclass.
getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
Overrides the method defined in the superclass.
getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
Overrides the method defined in the superclass.
getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
Overrides the method defined in the superclass.
getNumInfoRecords() - Method in class loci.poi.hssf.record.ExtSSTRecord
 
getNumLayers() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
Returns the number of layers that are actually generated.
getNumMergedRegions() - Method in class loci.poi.hssf.model.Sheet
 
getNumMergedRegions() - Method in class loci.poi.hssf.usermodel.HSSFSheet
returns the number of merged regions
getNumNames() - Method in class loci.poi.hssf.model.Workbook
gets the total number of names
getNumOfREFRecords() - Method in class loci.poi.hssf.record.ExternSheetRecord
returns the number of REF Records, which is in model
getNumOfREFStructures() - Method in class loci.poi.hssf.record.ExternSheetRecord
return the number of the REF structors , that is in Excel file
getNumPrecinct(int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder
Gets the number of precincts in a given component and resolution level.
getNumRecords() - Method in class loci.poi.hssf.model.Sheet
Returns the number of low level binary records in this sheet.
getNumRecords() - Method in class loci.poi.hssf.model.Workbook
 
getNumRefs() - Method in class loci.poi.hssf.record.SelectionRecord
get the number of cell refs (we don't support selection so set to 0
getNumRowBreaks() - Method in class loci.poi.hssf.model.Sheet
Returns the number of row page breaks
getNumSelectedTabs() - Method in class loci.poi.hssf.record.WindowOneRecord
get the number of selected tabs
getNumSeries() - Method in class loci.formats.in.LegacyND2Reader
 
getNumShapeIdsUsed() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster
 
getNumShapes() - Method in class loci.poi.ddf.EscherDgRecord
The number of shapes in this drawing group.
getNumShapesSaved() - Method in class loci.poi.ddf.EscherDggRecord
 
getNumSheets() - Method in class loci.poi.hssf.model.Workbook
returns the number of boundsheet objects contained in this workbook.
getNumStrings() - Method in class loci.poi.hssf.record.SSTRecord
 
getNumStringsPerBucket() - Method in class loci.poi.hssf.record.ExtSSTRecord
 
getNumThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getNumTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Returns the number of TIFFFields in this directory.
getNumTileParts(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
Returns the number of tile-part found for a given tile
getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets the number of tiles
getNumTiles(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the total number of tiles in the image.
getNumTiles() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getNumTiles(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the total number of tiles in the image.
getNumTiles() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Return the number of tiles in the image
getNumTiles(Point) - Method in interface jj2000.j2k.image.ImgData
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in interface jj2000.j2k.image.ImgData
Returns the total number of tiles in the image.
getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the total number of tiles in the image.
getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the total number of tiles in the image.
getNumTiles(Point) - Method in class jj2000.j2k.image.input.ImgReader
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in class jj2000.j2k.image.input.ImgReader
Returns the total number of tiles in the image.
getNumTiles(Point) - Method in class jj2000.j2k.image.Tiler
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in class jj2000.j2k.image.Tiler
Returns the total number of tiles in the image.
getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the total number of tiles in the image.
getNumTiles(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the total number of tiles in the image.
getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the number of tiles in the horizontal and vertical directions.
getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the total number of tiles in the image.
getNumUniqueStrings() - Method in class loci.poi.hssf.record.SSTRecord
 
getNumValues() - Method in class loci.poi.hssf.record.SeriesRecord
Get the num values field for the Series record.
getNumXTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the number of tiles along the tile grid in the horizontal direction.
getNumXTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getNumYTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the number of tiles along the tile grid in the vertical direction.
getNumYTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getObject(int) - Method in class loci.formats.cache.ByteArraySource
 
getObject(int[]) - Method in class loci.formats.cache.Cache
Gets the cached object at the given dimensional position.
getObject(int) - Method in class loci.formats.cache.CacheSource
 
getObject(int) - Method in interface loci.formats.cache.ICacheSource
Get the object corresponding to the given index.
getObject(int) - Method in class loci.formats.gui.BufferedImageSource
 
getObject(int) - Method in class loci.plugins.util.ImageProcessorSource
 
getObjectArrayMaxLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectArrayMinLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectClass(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectCount() - Method in class loci.formats.cache.CacheSource
 
getObjectCount() - Method in interface loci.formats.cache.ICacheSource
Get the total number of objects that this source can retrieve.
getObjectCount() - Method in class loci.formats.gui.BufferedImageSource
 
getObjectCount() - Method in class loci.plugins.util.ImageProcessorSource
 
getObjectDefaultValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectEnumerations(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectId() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
Get the object id field for the CommonObjectData record.
getObjective(int) - Method in class ome.xml.model.Instrument
 
getObjective() - Method in class ome.xml.model.ObjectiveSettings
 
getObjectiveCalibratedMagnification(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveCalibratedMagnification(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveCalibratedMagnification(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveCalibratedMagnification(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveCorrection(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveCorrection(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveCorrection(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveCorrection(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveImmersion(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveImmersion(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveImmersion(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveImmersion(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveIris(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveIris(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveIris(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveIris(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveLens() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the objective lens string for this Frame.
getObjectiveLensNA() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the numerical aperture of the lens for this Frame.
getObjectiveLensNA(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveLensNA(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveLensNA(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveLensNA(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveLotNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveLotNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveLotNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveLotNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveManufacturer() - Method in class loci.formats.in.PrairieMetadata.Frame
Extracts the objective manufacturer from the objective lens string.
getObjectiveManufacturer(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveManufacturer(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveManufacturer(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveManufacturer(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveModel() - Method in class loci.formats.in.ND2Handler
 
getObjectiveModel(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveModel(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveModel(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveModel(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getObjectiveNominalMagnification(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveNominalMagnification(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveNominalMagnification(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveNominalMagnification(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveSerialNumber(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveSerialNumber(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveSerialNumber(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveSerialNumber(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveSettings() - Method in class ome.xml.model.Image
 
getObjectiveSettingsCorrectionCollar(int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveSettingsCorrectionCollar(int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveSettingsCorrectionCollar(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveSettingsCorrectionCollar(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveSettingsID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveSettingsID(int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveSettingsID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveSettingsID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveSettingsMedium(int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveSettingsMedium(int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveSettingsMedium(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveSettingsMedium(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveSettingsRefractiveIndex(int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveSettingsRefractiveIndex(int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveSettingsRefractiveIndex(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveSettingsRefractiveIndex(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectiveWorkingDistance(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getObjectiveWorkingDistance(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getObjectiveWorkingDistance(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getObjectiveWorkingDistance(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getObjectMaxValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectMinValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Answer whether object protection is enabled or disabled
getObjectType() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
Get the object type field for the CommonObjectData record.
getObjectValueType(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjRecord() - Method in class loci.poi.hssf.model.AbstractShape
 
getObjRecord() - Method in class loci.poi.hssf.model.LineShape
 
getObjRecord() - Method in class loci.poi.hssf.model.PictureShape
 
getObjRecord() - Method in class loci.poi.hssf.model.PolygonShape
 
getObjRecord() - Method in class loci.poi.hssf.model.SimpleFilledShape
 
getObjRecord() - Method in class loci.poi.hssf.model.TextboxShape
 
getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
Gives the offset of the end of last packet containing ROI information
getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
Gives the offset of the end of last packet containing ROI information
getOffset(int) - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the cth offset for this Frame.
getOffset() - Method in class loci.poi.ddf.EscherBSERecord
File offset in the delay stream.
getOffset() - Method in class loci.poi.hpsf.Section
Returns the offset of the section in the stream.
getOffset() - Method in class loci.poi.poifs.storage.RawDataBlock
 
getOffset() - Method in class ome.xml.model.Detector
 
getOffset() - Method in class ome.xml.model.DetectorSettings
 
getOMEMetadata(MetadataRetrieve) - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.getOMEMetadata(MetadataRetrieve) instead.
getOMEMetadata(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService
Returns a OMEXMLMetadata object with the same contents as the given MetadataRetrieve, converting it if necessary.
getOMEMetadata(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getOMEMetadata() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.READER.
getOMEXML(MetadataRetrieve) - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.getOMEXML(MetadataRetrieve) instead.
getOMEXML(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService
Extracts an OME-XML metadata string from the given metadata object, by converting to an OME-XML metadata object if necessary.
getOMEXML(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getOmeXmlMetadata() - Method in class loci.formats.in.FakeReader
 
getOmeXmlService() - Method in class loci.formats.in.FakeReader
 
getOMEXMLVersion(Object) - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.getOMEXMLVersion(Object) instead.
getOMEXMLVersion(Object) - Method in interface loci.formats.services.OMEXMLService
Gets the schema version for the given OME-XML metadata or root object (e.g., "2007-06" or "2003-FC").
getOMEXMLVersion(Object) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getOnDemandStripOffsets() - Method in class loci.formats.tiff.IFD
 
getOpenAllSeriesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getOperator() - Method in class mdbtools.dbengine.sql.Condition
 
getOperator() - Method in class mdbtools.dbengine.sql.Equation
 
getOpticalZoom() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the optical zoom associatetd with this Frame.
getOptimalTileHeight() - Method in class loci.formats.DelegateReader
 
getOptimalTileHeight() - Method in class loci.formats.FormatReader
 
getOptimalTileHeight() - Method in interface loci.formats.IFormatReader
Returns the optimal sub-image height for use with openBytes.
getOptimalTileHeight() - Method in class loci.formats.ImageReader
 
getOptimalTileHeight() - Method in class loci.formats.in.AFIReader
 
getOptimalTileHeight() - Method in class loci.formats.in.AmiraReader
 
getOptimalTileHeight() - Method in class loci.formats.in.APLReader
 
getOptimalTileHeight() - Method in class loci.formats.in.BaseZeissReader
 
getOptimalTileHeight() - Method in class loci.formats.in.BDReader
 
getOptimalTileHeight() - Method in class loci.formats.in.BioRadReader
 
getOptimalTileHeight() - Method in class loci.formats.in.CellSensReader
 
getOptimalTileHeight() - Method in class loci.formats.in.EPSReader
 
getOptimalTileHeight() - Method in class loci.formats.in.FlexReader
 
getOptimalTileHeight() - Method in class loci.formats.in.FV1000Reader
 
getOptimalTileHeight() - Method in class loci.formats.in.HamamatsuVMSReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ImageIOReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ImarisHDFReader
 
getOptimalTileHeight() - Method in class loci.formats.in.InCellReader
 
getOptimalTileHeight() - Method in class loci.formats.in.IPWReader
 
getOptimalTileHeight() - Method in class loci.formats.in.L2DReader
 
getOptimalTileHeight() - Method in class loci.formats.in.LeicaReader
 
getOptimalTileHeight() - Method in class loci.formats.in.LeicaSCNReader
 
getOptimalTileHeight() - Method in class loci.formats.in.LIFReader
 
getOptimalTileHeight() - Method in class loci.formats.in.MIASReader
 
getOptimalTileHeight() - Method in class loci.formats.in.MicromanagerReader
 
getOptimalTileHeight() - Method in class loci.formats.in.MinimalTiffReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ND2Reader
 
getOptimalTileHeight() - Method in class loci.formats.in.NDPIReader
 
getOptimalTileHeight() - Method in class loci.formats.in.NDPISReader
 
getOptimalTileHeight() - Method in class loci.formats.in.NRRDReader
 
getOptimalTileHeight() - Method in class loci.formats.in.OMETiffReader
 
getOptimalTileHeight() - Method in class loci.formats.in.OpenlabReader
 
getOptimalTileHeight() - Method in class loci.formats.in.PCIReader
 
getOptimalTileHeight() - Method in class loci.formats.in.PerkinElmerReader
 
getOptimalTileHeight() - Method in class loci.formats.in.PrairieReader
 
getOptimalTileHeight() - Method in class loci.formats.in.PyramidTiffReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ScanrReader
 
getOptimalTileHeight() - Method in class loci.formats.in.SVSReader
 
getOptimalTileHeight() - Method in class loci.formats.in.TrestleReader
 
getOptimalTileHeight() - Method in class loci.formats.in.VisitechReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ZeissLSMReader
 
getOptimalTileHeight() - Method in class loci.formats.ReaderWrapper
 
getOptimalTileWidth() - Method in class loci.formats.DelegateReader
 
getOptimalTileWidth() - Method in class loci.formats.FormatReader
 
getOptimalTileWidth() - Method in interface loci.formats.IFormatReader
Returns the optimal sub-image width for use with openBytes.
getOptimalTileWidth() - Method in class loci.formats.ImageReader
 
getOptimalTileWidth() - Method in class loci.formats.in.AFIReader
 
getOptimalTileWidth() - Method in class loci.formats.in.APLReader
 
getOptimalTileWidth() - Method in class loci.formats.in.BDReader
 
getOptimalTileWidth() - Method in class loci.formats.in.CellSensReader
 
getOptimalTileWidth() - Method in class loci.formats.in.EPSReader
 
getOptimalTileWidth() - Method in class loci.formats.in.FlexReader
 
getOptimalTileWidth() - Method in class loci.formats.in.FV1000Reader
 
getOptimalTileWidth() - Method in class loci.formats.in.HamamatsuVMSReader
 
getOptimalTileWidth() - Method in class loci.formats.in.ImarisHDFReader
 
getOptimalTileWidth() - Method in class loci.formats.in.InCellReader
 
getOptimalTileWidth() - Method in class loci.formats.in.IPWReader
 
getOptimalTileWidth() - Method in class loci.formats.in.L2DReader
 
getOptimalTileWidth() - Method in class loci.formats.in.LeicaReader
 
getOptimalTileWidth() - Method in class loci.formats.in.LeicaSCNReader
 
getOptimalTileWidth() - Method in class loci.formats.in.MIASReader
 
getOptimalTileWidth() - Method in class loci.formats.in.MicromanagerReader
 
getOptimalTileWidth() - Method in class loci.formats.in.MinimalTiffReader
 
getOptimalTileWidth() - Method in class loci.formats.in.NDPIReader
 
getOptimalTileWidth() - Method in class loci.formats.in.NDPISReader
 
getOptimalTileWidth() - Method in class loci.formats.in.OMETiffReader
 
getOptimalTileWidth() - Method in class loci.formats.in.PCIReader
 
getOptimalTileWidth() - Method in class loci.formats.in.PerkinElmerReader
 
getOptimalTileWidth() - Method in class loci.formats.in.PrairieReader
 
getOptimalTileWidth() - Method in class loci.formats.in.PyramidTiffReader
 
getOptimalTileWidth() - Method in class loci.formats.in.ScanrReader
 
getOptimalTileWidth() - Method in class loci.formats.in.SVSReader
 
getOptimalTileWidth() - Method in class loci.formats.in.TrestleReader
 
getOptimalTileWidth() - Method in class loci.formats.ReaderWrapper
 
getOptimalWidth() - Method in class loci.formats.in.ZeissLSMReader
 
getOptimize() - Method in class loci.poi.hssf.record.RowRecord
get whether to optimize or not (set to 0)
getOption(String) - Method in class loci.plugins.prefs.OptionsList
Gets the option with the given key.
getOption() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
Get the option field for the CommonObjectData record.
getOptionFlag() - Method in class loci.poi.hssf.record.NameRecord
gets the option flag
getOptionFlags() - Method in class loci.poi.hssf.record.BoundSheetRecord
get the option flags (unimportant for HSSF supported sheets)
getOptionFlags() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
get the (currently unimportant to HSSF) option flags
getOptionFlags() - Method in class loci.poi.hssf.record.RowRecord
gets the option bitmask.
getOptionFlags() - Method in class loci.poi.hssf.record.UnicodeString
get the option flags which among other things return if this is a 16-bit or 8 bit string
getOptions() - Method in class loci.plugins.in.ImportProcess
 
getOptions() - Method in class loci.poi.ddf.EscherOptRecord
Automatically recalculate the correct option
getOptions() - Method in class loci.poi.ddf.EscherRecord
 
getOptions() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Get the options field for the AxisOptions record.
getOptions() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
Get the options field for the CategorySeriesAxis record.
getOptions() - Method in class loci.poi.hssf.record.ColumnInfoRecord
get the options bitfield - use the bitsetters instead
getOptions() - Method in class loci.poi.hssf.record.DatRecord
Get the options field for the Dat record.
getOptions() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getOptions() - Method in class loci.poi.hssf.record.FormulaRecord
get the option flags
getOptions() - Method in class loci.poi.hssf.record.FrameRecord
Get the options field for the Frame record.
getOptions() - Method in class loci.poi.hssf.record.LegendRecord
Get the options field for the Legend record.
getOptions() - Method in class loci.poi.hssf.record.LinkedDataRecord
Get the options field for the LinkedData record.
getOptions() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getOptions() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Get the options field for the TextObjectBase record.
getOptions() - Method in class loci.poi.hssf.record.TickRecord
Get the options field for the Tick record.
getOptions() - Method in class loci.poi.hssf.record.ValueRangeRecord
Get the options field for the ValueRange record.
getOptions() - Method in class loci.poi.hssf.record.WindowOneRecord
get the options bitmask (see bit setters)
getOptions() - Method in class loci.poi.hssf.record.WindowTwoRecord
get the options bitmask or just use the bit setters.
getOptions() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the bit flags for the options.
getOptions1() - Method in class loci.poi.hssf.record.TextRecord
Get the options1 field for the Text record.
getOptions2() - Method in class loci.poi.hssf.record.TextRecord
Get the options2 field for the Text record.
getOrder() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper
 
getOrder() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper
 
getOrder() - Method in class loci.common.ByteArrayHandle
 
getOrder() - Method in class loci.common.FileHandle
 
getOrder() - Method in interface loci.common.IRandomAccess
Returns the current order of the stream.
getOrder() - Method in class loci.common.NIOFileHandle
 
getOrder() - Method in class loci.common.StreamHandle
 
getOrder() - Method in class loci.formats.cache.CacheStrategy
 
getOrder() - Method in interface loci.formats.cache.ICacheStrategy
Retrieves the order in which objects should be loaded along each axis.
getOrder() - Method in class ome.scifio.io.ByteArrayHandle
 
getOrder() - Method in class ome.scifio.io.FileHandle
 
getOrder() - Method in interface ome.scifio.io.IRandomAccess
Returns the current order of the stream.
getOrder() - Method in class ome.scifio.io.NIOFileHandle
 
getOrder() - Method in class ome.scifio.io.StreamHandle
 
getOrderBy(int) - Method in class mdbtools.dbengine.sql.Select
 
getOrderByCount() - Method in class mdbtools.dbengine.sql.Select
 
getOrgX() - Method in interface loci.formats.services.WlzService
Gets column origin.
getOrgX() - Method in class loci.formats.services.WlzServiceImpl
 
getOrgY() - Method in interface loci.formats.services.WlzService
Gets line origin.
getOrgY() - Method in class loci.formats.services.WlzServiceImpl
 
getOrgZ() - Method in interface loci.formats.services.WlzService
Gets plane origin.
getOrgZ() - Method in class loci.formats.services.WlzServiceImpl
 
getOrigBitDepth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getOriginalBitDepth(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the original bitdepth of the specified component.
getOriginalIndex(int) - Method in class loci.formats.ChannelMerger
Returns the image number in the original dataset that corresponds to the given image number.
getOriginalIndex(int) - Method in class loci.formats.ChannelSeparator
Returns the image number in the original dataset that corresponds to the given image number.
getOriginalMetadata(OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService
Parse any OriginalMetadata annotations from the given OME-XML metadata object and store them in a Hashtable.
getOriginalMetadata(OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getOriginalMetadata() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.METADATA.
getOriginalOrder() - Method in class loci.formats.AxisGuesser
Gets the original dimension order.
getOSVersion() - Method in class loci.poi.hpsf.PropertySet
Returns the property set stream's low-level "OS version" field.
getOSVersion() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getOutlineLevel() - Method in class loci.poi.hssf.record.ColumnInfoRecord
get the outline level for the cells
getOutlineLevel() - Method in class loci.poi.hssf.record.RowRecord
get the outline level of this row
getOutlineStyleLevel() - Method in class loci.poi.hssf.record.StyleRecord
get the row or column level of the style (if builtin 1||2)
getPackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
For the case of binary data (isBinary() returns true), return the binary data as a packed byte array.
getPackedPktHead(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Return the packed packet headers for a given tile.
getPacketPerTilePart() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets packetPerTilePart
getPackPacketHeaderInMain() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets packPacketHeaderInMain
getPackPacketHeaderInTile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets packPacketHeaderInTile
getPageBreakZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord
zoom magification in page break view
getPageCount() - Method in class loci.poi.hpsf.SummaryInformation
Returns the page count or 0 if the SummaryInformation does not contain a page count.
getPaged() - Method in class loci.poi.hssf.record.WindowTwoRecord
is the sheet currently displayed in the window
getPageStart() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getPageStart() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the page start.
getPaint() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getPaint() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the palette options bitmask (see the individual bit getter methods that reference this one)
getPalettepos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getPane() - Method in class loci.poi.hssf.record.SelectionRecord
get which window pane this is for
getPaneInformation() - Method in class loci.poi.hssf.model.Sheet
Returns the information regarding the currently configured pane (split or freeze).
getPaneInformation() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Returns the information regarding the currently configured pane (split or freeze).
getPaperSize() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getPaperSize() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the paper size.
getParameterClass(int) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the parameters that are used in this class.
getParameterInfo() - Static method in class jj2000.j2k.codestream.writer.PktEncoder
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.entropy.decoder.EntropyDecoder
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.quantization.dequantizer.Dequantizer
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.quantization.quantizer.Quantizer
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.roi.encoder.ROIScaler
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.roi.ROIDeScaler
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.AnWTFilter
Returns the parameters that are used in this class and implementing classes.
getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT
Returns the parameters that are used in this class and implementing classes.
getParCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the par count or 0 if the DocumentSummaryInformation does not contain a par count.
getParent(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
 
getParent(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
 
getParent() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
Returns the parent of this subband.
getParent() - Method in class jj2000.j2k.wavelet.Subband
Returns the parent of this subband.
getParent() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
Returns the parent of this subband.
getParent() - Method in class loci.common.Location
Returns the name of this file's parent directory, i.e.
getParent() - Method in class loci.poi.hssf.usermodel.HSSFShape
Gets the parent shape.
getParent() - Method in interface loci.poi.poifs.filesystem.Entry
get this Entry's parent (the DirectoryEntry that owns this Entry).
getParent() - Method in class loci.poi.poifs.filesystem.EntryNode
get this Entry's parent (the DocumentEntry that owns this Entry).
getParent() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath
Returns the path's parent or null if this path is the root path.
getParent() - Method in class ome.scifio.io.Location
Returns the name of this file's parent directory, i.e.
getParentFile() - Method in class loci.common.Location
 
getParentFile() - Method in class ome.scifio.io.Location
 
getParentIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
for cell XF types this is the parent style (usually 0/normal).
getParentTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Returns the parent TIFFTag of this directory if one has been defined or null otherwise.
getParsedExpression() - Method in class loci.poi.hssf.record.FormulaRecord
get the stack as a list
getParsingEnabled() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
Gets parsingEnabled
getPassword() - Method in class loci.poi.hssf.model.Sheet
Returns the PasswordRecord.
getPassword() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getPassword() - Method in class loci.poi.hssf.record.PasswordRecord
get the password
getPassword() - Method in class loci.poi.hssf.record.PasswordRev4Record
get the password
getPassword() - Method in class loci.poi.hssf.usermodel.HSSFSheet
 
getPath() - Method in class loci.common.Location
 
getPath() - Method in class loci.plugins.util.BFVirtualStack
 
getPath() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent
 
getPath() - Method in class loci.poi.poifs.filesystem.DirectoryNode
 
getPath() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent
 
getPath() - Method in class ome.scifio.io.Location
 
getPatriarch() - Method in class loci.poi.hssf.record.EscherAggregate
 
getPattern() - Method in class loci.formats.FilePattern
Gets the file pattern string.
getPattern() - Method in class loci.poi.hssf.record.AreaFormatRecord
Get the pattern field for the AreaFormat record.
getPhotometricInterpretation() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
Returns the current value that will be written to the Photometricinterpretation tag.
getPhotometricInterpretation() - Method in class loci.formats.tiff.IFD
Retrieves the image's photometric interpretation (TIFF tag PhotometricInterpretation) from this IFD.
getPhysicalNumberOfCells() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getPhysicalNumberOfCells() - Method in class loci.poi.hssf.usermodel.HSSFRow
gets the number of defined cells (NOT number of cells in the actual row!).
getPhysicalNumberOfRows() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getPhysicalNumberOfRows() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Returns the number of phsyically defined rows (NOT the number of rows in the sheet)
getPhysicalSizeX(Double) - Static method in class loci.formats.FormatTools
 
getPhysicalSizeX() - Method in class loci.tests.testng.Configuration
 
getPhysicalSizeX() - Method in class ome.xml.model.Pixels
 
getPhysicalSizeY(Double) - Static method in class loci.formats.FormatTools
 
getPhysicalSizeY() - Method in class loci.tests.testng.Configuration
 
getPhysicalSizeY() - Method in class ome.xml.model.Pixels
 
getPhysicalSizeZ(Double) - Static method in class loci.formats.FormatTools
 
getPhysicalSizeZ() - Method in class loci.tests.testng.Configuration
 
getPhysicalSizeZ() - Method in class ome.xml.model.Pixels
 
getPictDimensions(byte[]) - Method in class loci.formats.gui.LegacyQTTools
Gets width and height for the given PICT bytes.
getPicturedata() - Method in class loci.poi.ddf.EscherBlipRecord
 
getPictureIndex() - Method in class loci.poi.hssf.usermodel.HSSFPicture
 
getPIDString(long) - Method in class loci.poi.hpsf.Section
Returns the PID string associated with a property ID.
getPIDString(byte[], long) - Static method in class loci.poi.hpsf.wellknown.SectionIDMap
Returns the property ID string that is associated with a given property ID in a section format ID's namespace.
getPinholeSize() - Method in class loci.formats.in.ND2Handler
 
getPinholeSize() - Method in class ome.xml.model.Channel
 
getPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixel(int, int, int[]) - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixelBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools
Return a 2D array of bytes representing the image.
getPixelBytes(WritableRaster, boolean) - Static method in class loci.formats.gui.AWTImageTools
Return a 2D array of bytes representing the image.
getPixelBytes(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Return a 2D array of bytes representing the image.
getPixelBytes(WritableRaster, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Return a 2D array of bytes representing the image.
getPixelCount() - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixelInterpolated(double, double) - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixels(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
Gets the image's pixel data as arrays of primitives, one per channel.
getPixels(BufferedImage, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Gets the image's pixel data as arrays of primitives, one per channel.
getPixels(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
Gets the raster's pixel data as arrays of primitives, one per channel.
getPixels(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Gets the raster's pixel data as arrays of primitives, one per channel.
getPixels() - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixels() - Method in class ome.xml.model.BinData
 
getPixels() - Method in class ome.xml.model.Channel
 
getPixels() - Method in class ome.xml.model.Image
 
getPixels() - Method in class ome.xml.model.Plane
 
getPixels() - Method in class ome.xml.model.TiffData
 
getPixelsAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsBigEndian(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsBigEndian(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsBigEndian(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsBigEndian(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsBinDataBigEndian(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsBinDataBigEndian(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsBinDataBigEndian(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsBinDataBigEndian(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsBinDataCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsBinDataCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsBinDataCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsBinDataCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsCopy() - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixelsDimensionOrder(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsDimensionOrder(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsDimensionOrder(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsDimensionOrder(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsID(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsInterleaved(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsInterleaved(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsInterleaved(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsInterleaved(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelSizeX() - Method in class loci.formats.in.MetamorphHandler
 
getPixelSizeX() - Method in class loci.formats.in.ND2Handler
 
getPixelSizeY() - Method in class loci.formats.in.MetamorphHandler
 
getPixelSizeY() - Method in class loci.formats.in.ND2Handler
 
getPixelSizeZ() - Method in class loci.formats.in.ND2Handler
 
getPixelsPerLine() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the pixels per line for this Frame.
getPixelsPhysicalSizeX(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsPhysicalSizeX(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsPhysicalSizeX(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsPhysicalSizeX(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsPhysicalSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelsPhysicalSizeY(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsPhysicalSizeY(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsPhysicalSizeY(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsPhysicalSizeY(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsPhysicalSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelsPhysicalSizeZ(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsPhysicalSizeZ(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsPhysicalSizeZ(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsPhysicalSizeZ(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsPhysicalSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelsSHA1(int) - Method in class loci.formats.ome.OmeisImporter
Deprecated.
Gets SHA1 hash for the pixels corresponding to the given pixels ID.
getPixelsSignificantBits(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsSignificantBits(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsSignificantBits(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsSignificantBits(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsSizeC(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsSizeC(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsSizeC(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsSizeC(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsSizeT(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsSizeT(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsSizeT(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsSizeT(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsSizeX(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsSizeX(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsSizeX(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsSizeX(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsSizeY(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsSizeY(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsSizeY(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsSizeY(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsSizeZ(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsSizeZ(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsSizeZ(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsSizeZ(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsTimeIncrement(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsTimeIncrement(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsTimeIncrement(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsTimeIncrement(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelsTimeIncrement(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelsType(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPixelsType(int) - Method in class loci.formats.meta.DummyMetadata
 
getPixelsType(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPixelsType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPixelType() - Method in class loci.formats.FileStitcher
 
getPixelType() - Method in class loci.formats.FormatReader
 
getPixelType(String) - Method in class loci.formats.FormatReader
Retrieves an PixelType enumeration value for the given String.
getPixelType(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
Gets the pixel type of the given image.
getPixelType() - Method in interface loci.formats.IFormatReader
Gets the pixel type.
getPixelType() - Method in class loci.formats.ImageReader
 
getPixelType() - Method in class loci.formats.ReaderWrapper
 
getPixelType() - Method in interface loci.formats.services.WlzService
Gets the image pixel type.
getPixelType() - Method in class loci.formats.services.WlzServiceImpl
 
getPixelType() - Method in class loci.formats.tiff.IFD
Retrieves the image's pixel type based on the BitsPerSample tag.
getPixelType(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelType() - Method in class loci.tests.testng.Configuration
 
getPixelTypes() - Method in class loci.formats.FormatWriter
 
getPixelTypes(String) - Method in class loci.formats.FormatWriter
 
getPixelTypes() - Method in interface loci.formats.IFormatWriter
Gets the supported pixel types.
getPixelTypes(String) - Method in interface loci.formats.IFormatWriter
Gets the supported pixel types for the given codec.
getPixelTypes() - Method in class loci.formats.ImageWriter
 
getPixelTypes(String) - Method in class loci.formats.ImageWriter
 
getPixelTypes(String) - Method in class loci.formats.out.APNGWriter
 
getPixelTypes(String) - Method in class loci.formats.out.AVIWriter
 
getPixelTypes(String) - Method in class loci.formats.out.EPSWriter
 
getPixelTypes(String) - Method in class loci.formats.out.ICSWriter
 
getPixelTypes(String) - Method in class loci.formats.out.ImageIOWriter
 
getPixelTypes(String) - Method in class loci.formats.out.JavaWriter
 
getPixelTypes(String) - Method in class loci.formats.out.JPEG2000Writer
Overridden to return the formats supported by the writer.
getPixelTypes(String) - Method in class loci.formats.out.JPEGWriter
 
getPixelTypes(String) - Method in class loci.formats.out.OMEXMLWriter
 
getPixelTypes(String) - Method in class loci.formats.out.QTWriter
 
getPixelTypes(String) - Method in class loci.formats.out.TiffWriter
 
getPixelTypes(String) - Method in class loci.formats.out.WlzWriter
 
getPixelTypes() - Method in class loci.formats.WriterWrapper
 
getPixelTypes(String) - Method in class loci.formats.WriterWrapper
 
getPixelTypeString(int) - Static method in class loci.formats.FormatTools
Takes a pixel type value and gets a corresponding string representation.
getPixelValue(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getPlanarConfiguration() - Method in class loci.formats.tiff.IFD
Retrieves the image's planar configuration (TIFF tag PlanarConfiguration) from this IFD.
getPlane(int) - Method in class ome.xml.model.Pixels
 
getPlaneAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlaneAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlaneAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlaneAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlaneAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlaneAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlaneAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlaneAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlaneByteOffset(int, int, int) - Method in class loci.formats.in.DeltavisionReader
Given any specific Z, W, and T of a plane, determine the absolute byte offset of the plane in the file.
getPlaneCount() - Method in class loci.formats.FormatWriter
Retrieve the total number of planes in the current series.
getPlaneCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlaneCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlaneCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlaneCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlaneCount() - Method in class loci.formats.out.TiffWriter
 
getPlaneCount() - Method in class ome.xml.model.TiffData
 
getPlaneDeltaT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlaneDeltaT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlaneDeltaT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlaneDeltaT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlaneExposureTime(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlaneExposureTime(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlaneExposureTime(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlaneExposureTime(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlaneHashSHA1(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlaneHashSHA1(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlaneHashSHA1(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlaneHashSHA1(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlaneMaximum(int) - Method in class loci.formats.MinMaxCalculator
Retrieves the maximum pixel value for the specified plane.
getPlaneMinimum(int) - Method in class loci.formats.MinMaxCalculator
Retrieves the minimum pixel value for the specified plane.
getPlanePositionX(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlanePositionX(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlanePositionX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlanePositionX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlanePositionX(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlanePositionY(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlanePositionY(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlanePositionY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlanePositionY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlanePositionY(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlanePositionZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlanePositionZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlanePositionZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlanePositionZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlanePositionZ(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlaneSize(IFormatReader) - Static method in class loci.formats.FormatTools
Returns the size in bytes of a single plane.
getPlaneSize(IFormatReader, int, int) - Static method in class loci.formats.FormatTools
Returns the size in bytes of a w * h tile.
getPlaneTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlaneTheC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlaneTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlaneTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlaneTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlaneTheT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlaneTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlaneTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlaneTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlaneTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlaneTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlaneTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlaneTimingDeltaT(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlaneTimingExposureTime(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlate(int) - Method in class ome.xml.model.OME
 
getPlate() - Method in class ome.xml.model.PlateAcquisition
 
getPlate() - Method in class ome.xml.model.Well
 
getPlateAcquisition(int) - Method in class ome.xml.model.Plate
 
getPlateAcquisitionAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAcquisitionAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAcquisitionCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAcquisitionDescription(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionDescription(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionDescription(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionDescription(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAcquisitionEndTime(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionEndTime(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionEndTime(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionEndTime(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAcquisitionID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAcquisitionMaximumFieldCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionMaximumFieldCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionMaximumFieldCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionMaximumFieldCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAcquisitionName(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionName(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionName(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionName(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAcquisitionStartTime(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionStartTime(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionStartTime(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionStartTime(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAcquisitionWellSampleRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAcquisitionWellSampleRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAcquisitionWellSampleRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAcquisitionWellSampleRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateColumnNamingConvention(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateColumnNamingConvention(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateColumnNamingConvention(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateColumnNamingConvention(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateColumns(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateColumns(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateColumns(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateColumns(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateCount() - Method in class loci.formats.meta.AggregateMetadata
 
getPlateCount() - Method in class loci.formats.meta.DummyMetadata
 
getPlateCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateExternalIdentifier(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateExternalIdentifier(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateExternalIdentifier(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateExternalIdentifier(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateFieldIndex(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateFieldIndex(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateFieldIndex(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateFieldIndex(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateID(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateName(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateRowNamingConvention(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateRowNamingConvention(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateRowNamingConvention(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateRowNamingConvention(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateRows(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateRows(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateRows(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateRows(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateStatus(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateStatus(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateStatus(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateStatus(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateWellOriginX(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateWellOriginX(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateWellOriginX(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateWellOriginX(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPlateWellOriginY(int) - Method in class loci.formats.meta.AggregateMetadata
 
getPlateWellOriginY(int) - Method in class loci.formats.meta.DummyMetadata
 
getPlateWellOriginY(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPlateWellOriginY(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPockelCell() - Method in class ome.xml.model.Laser
 
getPockelCellSetting() - Method in class ome.xml.model.Channel
 
getPointFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointLocked(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointNumber() - Method in class loci.poi.hssf.record.DataFormatRecord
Get the point number field for the DataFormat record.
getPoints() - Method in class ome.xml.model.Polygon
 
getPoints() - Method in class ome.xml.model.Polyline
 
getPointStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointText(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointText(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointTheC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointTheT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointTransform(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointVisible(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointX(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointX(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPointY(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPointY(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPointY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPointY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonLocked(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonPoints(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonPoints(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonPoints(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonPoints(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonText(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonText(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonTheC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonTheT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonTransform(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolygonVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolygonVisible(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolygonVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolygonVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineLocked(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineMarkerEnd(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineMarkerEnd(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineMarkerEnd(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineMarkerEnd(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineMarkerStart(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineMarkerStart(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineMarkerStart(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineMarkerStart(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylinePoints(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylinePoints(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylinePoints(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylinePoints(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineText(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineText(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineTheC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineTheT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineTransform(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPolylineVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getPolylineVisible(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getPolylineVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getPolylineVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getPos() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
Returns the stream position clamped to a maximum of Integer.MAX_VALUE.
getPos() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
Returns the current offset in the file
getPos() - Method in interface jj2000.j2k.io.RandomAccessIO
Returns the current position in the stream, which is the position from where the next byte of data would be read.
getPos() - Method in class jj2000.j2k.util.ISRandomAccessIO
Returns the current position in the stream, which is the position from where the next byte of data would be read.
getPos() - Method in class loci.poi.hssf.record.RecordInputStream
 
getPositionNames() - Method in class loci.formats.in.ND2Handler
 
getPositionOfBof() - Method in class loci.poi.hssf.record.BoundSheetRecord
get the offset in bytes of the Beginning of File Marker within the HSSF Stream part of the POIFS file
getPositionX() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the X stage position associated with this Frame.
getPositionX() - Method in class ome.xml.model.Plane
 
getPositionX() - Method in class ome.xml.model.WellSample
 
getPositionY() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the Y stage position associated with this Frame.
getPositionY() - Method in class ome.xml.model.Plane
 
getPositionY() - Method in class ome.xml.model.WellSample
 
getPositionZ() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the Z stage position associated with this Frame.
getPositionZ() - Method in class ome.xml.model.Plane
 
getPossible(String) - Method in class loci.plugins.prefs.OptionsList
Gets the possible values for the string option with the given key.
getPossible() - Method in class loci.plugins.prefs.StringOption
Gets the list of possible values.
getPossibleDomains(String) - Method in class loci.formats.FormatReader
 
getPossibleDomains(String) - Method in interface loci.formats.IFormatReader
Returns a list of scientific domains in which this format is used.
getPossibleDomains(String) - Method in class loci.formats.ImageReader
 
getPossibleDomains(String) - Method in class loci.formats.ReaderWrapper
 
getPossiblePositions() - Method in class loci.formats.cache.CacheStrategy
Gets positions to consider for possible inclusion in the cache, assuming a current position at the origin (0).
getPossiblePositions() - Method in class loci.formats.cache.CrosshairStrategy
 
getPossiblePositions() - Method in class loci.formats.cache.RectangleStrategy
 
getPower() - Method in class ome.xml.model.LightSource
 
getPowers() - Method in class loci.formats.in.ND2Handler
 
getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the precinct partition width for the specified tile-component and (tile-component) resolution level.
getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the precinct partition width for the specified tile-component and resolution level.
getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder
Returns the precinct partition width for the specified component, resolution level and tile.
getPPX(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc
Returns the width of a packet for the specified tile- component and resolution level.
getPPX(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
Returns the precinct partition width for the specified component, tile and resolution level.
getPPX(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec
Returns the precinct partition width in component 'n' and tile 't' at resolution level 'rl'.
getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the precinct partition height for the specified tile-component and (tile-component) resolution level.
getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the precinct partition height for the specified component, tile and resolution level.
getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder
Returns the precinct partition height for the specified component, resolution level and tile.
getPPY(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc
Returns the height of a packet for the specified tile- component and resolution level.
getPPY(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
Returns the precinct partition height for the specified component, tile and resolution level.
getPPY(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec
Returns the precinct partition height in component 'n' and tile 't' at resolution level 'rl'.
getPrecedence() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
Returns Precedence.
getPrecinctPartition() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets precinctPartition
getPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder
Get PrecInfo instance of the specified resolution level, component and precinct.
getPrecInfo(int, int, int, int) - Method in class jj2000.j2k.codestream.writer.PktEncoder
Returns information about a given precinct
getPreferredEncoding() - Static method in class loci.poi.util.StringUtil
 
getPreferredSize() - Method in class loci.formats.gui.CacheIndicator
 
getPreferredSize() - Method in class loci.formats.gui.PreviewPane
 
getPreferredSize() - Method in class loci.poi.hssf.usermodel.HSSFPicture
Calculate the preferred size for this picture.
getPreferredSize() - Method in class loci.tests.ImageTester
 
getPrefix() - Method in class loci.formats.FilePattern
Gets the pattern's text string before any numerical ranges.
getPrefix(int) - Method in class loci.formats.FilePattern
Gets the pattern's text string before the given numerical block.
getPrefix(String) - Method in class loci.formats.in.ZeissTIFFReader
 
getPrefixes() - Method in class loci.formats.FilePattern
Gets the pattern's text string before each numerical block.
getPreOffset() - Method in class loci.poi.hssf.model.Sheet
get the preoffset when using DBCELL records (currently unused) - this is the position of this sheet within the whole file.
getPresentationFormat() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the presentation format (or null).
getPreviousChild() - Method in interface loci.poi.poifs.property.Child
Get the previous Child, if any
getPreviousChild() - Method in class loci.poi.poifs.property.Property
Get the previous Child, if any
getPreviousSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getPrintArea(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Retrieves the reference for the printarea of the specified sheet, the sheet name is appended to the reference even if it was not specified.
getPrintGridlines() - Method in class loci.poi.hssf.model.Sheet
Returns the PrintGridlinesRecord.
getPrintGridlines() - Method in class loci.poi.hssf.record.PrintGridlinesRecord
get whether or not to print the gridlines (and make your spreadsheet ugly)
getPrintHeaders() - Method in class loci.poi.hssf.record.PrintHeadersRecord
get whether to print the headers - y/n
getPrintSetup() - Method in class loci.poi.hssf.model.Sheet
Returns the PrintSetupRecord.
getPrintSetup() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Gets the print setup object.
getPriorities() - Method in class loci.formats.cache.CacheStrategy
 
getPriorities() - Method in interface loci.formats.cache.ICacheStrategy
Retrieves the priority for caching each axis.
getProcessor(int) - Method in class loci.plugins.util.BFVirtualStack
 
getProgressionName() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets progressionType
getProgressionType() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets progressionType.
getProgressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets progressionType
getProgressMaximum() - Method in class loci.common.StatusEvent
Gets progress maximum.
getProgressMaximum() - Method in class ome.scifio.common.StatusEvent
Gets progress maximum.
getProgressValue() - Method in class loci.common.StatusEvent
Gets progress value.
getProgressValue() - Method in class ome.scifio.common.StatusEvent
Gets progress value.
getProgressWatch() - Static method in class jj2000.j2k.util.FacilityManager
Returns the ProgressWatch instance registered with the current thread (the thread that calls this method).
getProject(int) - Method in class ome.xml.model.OME
 
getProjectAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getProjectAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getProjectAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getProjectAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getProjectAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getProjectAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getProjectAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getProjectAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getProjectCount() - Method in class loci.formats.meta.AggregateMetadata
 
getProjectCount() - Method in class loci.formats.meta.DummyMetadata
 
getProjectCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getProjectCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getProjectDatasetRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getProjectDatasetRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getProjectDatasetRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getProjectDatasetRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getProjectDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getProjectDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getProjectDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getProjectDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getProjectExperimenterGroupRef(int) - Method in class loci.formats.meta.AggregateMetadata
 
getProjectExperimenterGroupRef(int) - Method in class loci.formats.meta.DummyMetadata
 
getProjectExperimenterGroupRef(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getProjectExperimenterGroupRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getProjectExperimenterRef(int) - Method in class loci.formats.meta.AggregateMetadata
 
getProjectExperimenterRef(int) - Method in class loci.formats.meta.DummyMetadata
 
getProjectExperimenterRef(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getProjectExperimenterRef(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getProjectID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getProjectID(int) - Method in class loci.formats.meta.DummyMetadata
 
getProjectID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getProjectID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getProjectName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getProjectName(int) - Method in class loci.formats.meta.DummyMetadata
 
getProjectName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getProjectName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getProperties() - Method in class loci.poi.hpsf.MutableSection
Gets this section's properties.
getProperties() - Method in class loci.poi.hpsf.PropertySet
Convenience method returning the Property array contained in this property set.
getProperties() - Method in class loci.poi.hpsf.Section
Returns this section's properties.
getProperties() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getProperty(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Gets a property from the property set of this image.
getProperty(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getProperty(long) - Method in class loci.poi.hpsf.MutableSection
Gets a property.
getProperty(int) - Method in class loci.poi.hpsf.PropertySet
Convenience method returning the value of the property with the specified ID.
getProperty(long) - Method in class loci.poi.hpsf.Section
Returns the value of the property with the specified ID.
getProperty(int) - Method in class loci.poi.hpsf.SpecialPropertySet
 
getProperty() - Method in class loci.poi.poifs.filesystem.EntryNode
grant access to the property
getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.PropertySet
Convenience method returning the value of a boolean property with the specified ID.
getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.Section
Returns the value of the boolean property with the specified ID.
getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet
 
getPropertyCount() - Method in class loci.poi.hpsf.MutableSection
Overwrites the super class' method to cope with a redundancy: the property count is maintained in a separate member variable, but shouldn't.
getPropertyCount() - Method in class loci.poi.hpsf.Section
Returns the number of properties in this section.
getPropertyIntValue(int) - Method in class loci.poi.hpsf.PropertySet
Convenience method returning the value of the numeric property with the specified ID.
getPropertyIntValue(long) - Method in class loci.poi.hpsf.Section
Returns the value of the numeric property with the specified ID.
getPropertyIntValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet
 
getPropertyName(short) - Static method in class loci.poi.ddf.EscherProperties
 
getPropertyNames() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns a list of the properties recognized by this image.
getPropertyNames(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns an array of Strings recognized as names by this property source that begin with the supplied prefix.
getPropertyNames() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getPropertyNumber() - Method in class loci.poi.ddf.EscherProperty
 
getPropertySet(String) - Method in class loci.poi.POIDocument
For a given named property entry, either return it or null if if it wasn't found
getPropertySize() - Method in class loci.poi.ddf.EscherComplexProperty
Caclulates the number of bytes required to serialize this property.
getPropertySize() - Method in class loci.poi.ddf.EscherProperty
Most properties are just 6 bytes in length.
getPropertyStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader
get start of Property Table
getPropertyType(short) - Static method in class loci.poi.ddf.EscherProperties
 
getPropertyValue() - Method in class loci.poi.ddf.EscherSimpleProperty
 
getProtect() - Method in class loci.poi.hssf.model.Sheet
Returns the ProtectRecord.
getProtect() - Method in class loci.poi.hssf.record.ObjectProtectRecord
get whether the sheet is protected or not
getProtect() - Method in class loci.poi.hssf.record.ProtectionRev4Record
get whether the this is protected shared/tracked workbook or not
getProtect() - Method in class loci.poi.hssf.record.ProtectRecord
get whether the sheet is protected or not
getProtect() - Method in class loci.poi.hssf.record.ScenarioProtectRecord
get whether the sheet is protected or not
getProtect() - Method in class loci.poi.hssf.record.WindowProtectRecord
is this window protected or not
getProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Answer whether protection is enabled or disabled
getProtocolDescription() - Method in class ome.xml.model.Screen
 
getProtocolIdentifier() - Method in class ome.xml.model.Screen
 
getProtpos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getPtgClass() - Method in class loci.poi.hssf.record.formula.Ptg
returns the class (REF/VALUE/ARRAY) for this Ptg
getPulse(String) - Method in class loci.formats.FormatReader
Retrieves an Pulse enumeration value for the given String.
getPulse() - Method in class ome.xml.model.Laser
 
getQTVersion() - Method in class loci.formats.gui.LegacyQTTools
Gets the QuickTime for Java version number.
getQuantizationStep() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets quantizationStep
getQuantizationType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets quantizationType
getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC
 
getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD
 
getQuantTypeSpec() - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
Returns the quantization type spec object associated to the quantizer.
getQuietInfo() - Method in class loci.plugins.in.ImporterOptions
 
getRadiusX() - Method in class ome.xml.model.Ellipse
 
getRadiusY() - Method in class ome.xml.model.Ellipse
 
getRandomAccessFile() - Method in class loci.common.FileHandle
Gets the random access file object backing this FileHandle.
getRandomAccessFile() - Method in class loci.common.NIOFileHandle
Gets the random access file object backing this FileHandle.
getRandomAccessFile() - Method in class ome.scifio.io.FileHandle
Gets the random access file object backing this FileHandle.
getRandomAccessFile() - Method in class ome.scifio.io.NIOFileHandle
Gets the random access file object backing this FileHandle.
getRange() - Method in class loci.formats.cache.CacheStrategy
 
getRange() - Method in interface loci.formats.cache.ICacheStrategy
Retrieves the number of objects to cache along each axis.
getRange() - Method in class loci.poi.hssf.util.RangeAddress
 
getRasterLength(int[]) - Static method in class loci.formats.FormatTools
Computes the number of raster values for a positional array with the given lengths.
getRaw() - Method in class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam
Returns the value of the raw parameter.
getRawData() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getRawDataSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord
 
getRawImageType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
Returns an ImageTypeSpecifier describing an image whose underlying data array has the same format as the raw source pixel data.
getRawImageTypeSpecifier(int, int, int, int[], int[], int[], char[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
A utility method that returns an ImageTypeSpecifier suitable for decoding an image with the given parameters.
getRawSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord
get the length of the raw sheetname in characters the length depends on the unicode flag
getRawValue(int) - Method in class loci.poi.util.BitField
Obtain the value for the specified BitField, unshifted
getReader() - Method in class loci.formats.FileStitcher
Gets the wrapped reader prototype.
getReader(int) - Method in class loci.formats.FileStitcher
Gets the reader appropriate for use with the given image plane.
getReader(int, int) - Method in class loci.formats.FileStitcher
Gets the reader that should be used with the given series and image plane.
getReader(IFormatReader, Class<? extends IFormatReader>) - Static method in class loci.formats.FormatTools
Recursively look for the first underlying reader that is an instance of the given class.
getReader() - Method in class loci.formats.gui.FormatFileFilter
Returns the filter's reader.
getReader(String) - Method in class loci.formats.ImageReader
Gets the reader used to open the given file.
getReader() - Method in class loci.formats.ImageReader
Gets the reader used to open the current file.
getReader(Class<? extends IFormatReader>) - Method in class loci.formats.ImageReader
Gets the file format reader instance matching the given class.
getReader() - Method in class loci.formats.ReaderWrapper
Gets the wrapped reader.
getReader() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getReader() - Method in class loci.plugins.util.BFVirtualStack
 
getReader() - Method in class loci.tests.testng.Configuration
 
getReaders() - Method in class loci.formats.ImageReader
Gets all constituent file format readers.
getReadingOrder() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the reading order for far east versions (0 - Context, 1 - Left to right, 2 - right to left) - We could use some help with support for the far east.
getReadOnly() - Method in class loci.poi.hssf.record.FileSharingRecord
get the readonly
getReadOutRate() - Method in class loci.formats.in.MetamorphHandler
 
getReadOutRate() - Method in class ome.xml.model.DetectorSettings
 
getReagent(int) - Method in class ome.xml.model.Screen
 
getReagentAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getReagentAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getReagentAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getReagentAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getReagentAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getReagentAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getReagentAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getReagentAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getReagentCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getReagentCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getReagentCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getReagentCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getReagentDescription(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getReagentDescription(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getReagentDescription(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getReagentDescription(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getReagentID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getReagentID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getReagentID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getReagentID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getReagentIdentifier() - Method in class ome.xml.model.Reagent
 
getReagentName(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getReagentName(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getReagentName(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getReagentName(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getReagentReagentIdentifier(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getReagentReagentIdentifier(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getReagentReagentIdentifier(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getReagentReagentIdentifier(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getReagentSetDescription() - Method in class ome.xml.model.Screen
 
getReagentSetIdentifier() - Method in class ome.xml.model.Screen
 
getReason() - Method in exception loci.poi.hpsf.HPSFException
Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.
getReason() - Method in exception loci.poi.hpsf.HPSFRuntimeException
Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.
getReason() - Method in exception loci.poi.hssf.eventusermodel.HSSFUserException
Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.
getRecalc() - Method in class loci.poi.hssf.record.SaveRecalcRecord
get whether to recalculate formulas/etc before saving or not
getRecalcIdArray() - Method in class loci.poi.hssf.record.RecalcIdRecord
get the recalc array.
getRecordedProcessor() - Method in class loci.plugins.util.BFVirtualStack
 
getRecordId() - Method in class loci.poi.ddf.EscherChildAnchorRecord
The record id for the EscherChildAnchorRecord.
getRecordId() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The record id for this record.
getRecordId() - Method in class loci.poi.ddf.EscherClientDataRecord
Returns the identifier of this record.
getRecordId() - Method in class loci.poi.ddf.EscherDggRecord
 
getRecordId() - Method in class loci.poi.ddf.EscherDgRecord
 
getRecordId() - Method in class loci.poi.ddf.EscherRecord
Return the current record id.
getRecordId() - Method in class loci.poi.ddf.EscherSpgrRecord
The 16 bit identifier of this shape group record.
getRecordId() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getRecordId() - Method in class loci.poi.ddf.EscherSpRecord
 
getRecordName() - Method in class loci.poi.ddf.EscherBlipRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherBlipWMFRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherBSERecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherChildAnchorRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherClientDataRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherContainerRecord
 
getRecordName() - Method in class loci.poi.ddf.EscherDggRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherDgRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherOptRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherRecord
Subclasses should return the short name for this escher record.
getRecordName() - Method in class loci.poi.ddf.EscherSpgrRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherSpRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.EscherTextboxRecord
The short name for this record
getRecordName() - Method in class loci.poi.ddf.UnknownEscherRecord
The short name for this record
getRecordName() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getRecordName() - Method in class loci.poi.hssf.record.DrawingGroupRecord
 
getRecordName() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer
 
getRecordName() - Method in class loci.poi.hssf.record.DrawingSelectionRecord
 
getRecordName() - Method in class loci.poi.hssf.record.EscherAggregate
 
getRecordOffset() - Method in class loci.poi.hssf.record.RecordInputStream
 
getRecords() - Method in class loci.poi.hssf.model.Sheet
 
getRecords() - Method in class loci.poi.hssf.model.Workbook
 
getRecords() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getRecordSize() - Method in class loci.poi.ddf.EscherBitmapBlip
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherBlipRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherBSERecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherChildAnchorRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherClientAnchorRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherClientDataRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherContainerRecord
 
getRecordSize() - Method in class loci.poi.ddf.EscherDggRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherDgRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherMetafileBlip
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherOptRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherPictBlip
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherRecord
Subclasses should effeciently return the number of bytes required to serialize the record.
getRecordSize() - Method in class loci.poi.ddf.EscherSpgrRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherSpRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.EscherTextboxRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.ddf.UnknownEscherRecord
Returns the number of bytes that are required to serialize this record.
getRecordSize() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
Size of record (including 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
getRecordSize() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
gives the current serialized size of the record.
getRecordSize() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getRecordSize() - Method in class loci.poi.hssf.record.AreaFormatRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.AreaRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.AxisLineFormatRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.AxisOptionsRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.AxisParentRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.AxisRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.AxisUsedRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.BackupRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BarRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.BeginRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BlankRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BOFRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BookBoolRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BoolErrRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BottomMarginRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.BoundSheetRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.CalcCountRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.CalcModeRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ChartRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.CodepageRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ColumnInfoRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.CountryRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DataFormatRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.DateWindow1904Record
 
getRecordSize() - Method in class loci.poi.hssf.record.DatRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.DBCellRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DefaultColWidthRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DeltaRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DimensionsRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord
Size of record (including 4 byte headers for all sections)
getRecordSize() - Method in class loci.poi.hssf.record.DrawingRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DSFRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.EndRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.EndSubRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.EOFRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.EscherAggregate
The number of bytes required to serialize this record.
getRecordSize() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetSubRecord
returns the record size
getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTRecord
Returns the size of this record
getRecordSize() - Method in class loci.poi.hssf.record.FilePassRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FnGroupCountRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FontBasisRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.FontIndexRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.FontRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FooterRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FormatRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FormulaRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FrameRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.GridsetRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.GutsRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.HCenterRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.HeaderRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.HideObjRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.IndexRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.InterfaceEndRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.InterfaceHdrRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.IterationRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.LeftMarginRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.LegendRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.LineFormatRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.LinkedDataRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.MergeCellsRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.MMSRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.NameRecord
returns the record size
getRecordSize() - Method in class loci.poi.hssf.record.NoteRecord
Size of record
getRecordSize() - Method in class loci.poi.hssf.record.NoteStructureSubRecord
Size of record
getRecordSize() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.NumberRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ObjectLinkRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.ObjectProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ObjRecord
Size of record (excluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.PageBreakRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PaletteRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PaneRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.PasswordRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PasswordRev4Record
 
getRecordSize() - Method in class loci.poi.hssf.record.PlotAreaRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.PlotGrowthRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.PrecisionRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PrintGridlinesRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PrintHeadersRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ProtectionRev4Record
 
getRecordSize() - Method in class loci.poi.hssf.record.ProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.RecalcIdRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.Record
gives the current serialized size of the record.
getRecordSize() - Method in class loci.poi.hssf.record.RefModeRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.RefreshAllRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.RightMarginRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.RowRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SaveRecalcRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ScenarioProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SCLRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.SelectionRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.SeriesIndexRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.SeriesListRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.SeriesRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.SeriesTextRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.SSTRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.StringRecord
gives the current serialized size of the record.
getRecordSize() - Method in class loci.poi.hssf.record.StyleRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SupBookRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.TabIdRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.TextObjectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.TextRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.TickRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.TopMarginRecord
Size of record (exluding 4 byte header)
getRecordSize(UnicodeString.UnicodeRecordStats) - Method in class loci.poi.hssf.record.UnicodeString
 
getRecordSize() - Method in class loci.poi.hssf.record.UnitsRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.UnknownRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.UseSelFSRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ValueRangeRecord
Size of record (exluding 4 byte header)
getRecordSize() - Method in class loci.poi.hssf.record.VCenterRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WindowOneRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WindowProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WindowTwoRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WriteAccessRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WriteProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WSBoolRecord
 
getRecordSizeForBlockCount(int) - Static method in class loci.poi.hssf.record.IndexRecord
Returns the size of an INdexRecord when it needs to index the specified number of blocks
getRecordSizeForRows(int) - Static method in class loci.poi.hssf.record.DBCellRecord
Returns the size of a DBCellRecord when it needs to reference a certain number of rows
getRecordSizeForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord
Given a number of strings (in the sst), returns the size of the extsst record
getRectangleFillColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleFillColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleFillColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleFillColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleFillRule(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleFillRule(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleFillRule(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleFillRule(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleFontFamily(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleFontFamily(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleFontFamily(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleFontFamily(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleFontSize(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleFontSize(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleFontSize(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleFontSize(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleFontStyle(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleFontStyle(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleFontStyle(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleFontStyle(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleHeight(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleHeight(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleHeight(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleHeight(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleLineCap(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleLineCap(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleLineCap(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleLineCap(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleLocked(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleLocked(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleLocked(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleLocked(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleStrokeColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleStrokeColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleStrokeColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleStrokeColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleStrokeDashArray(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleStrokeDashArray(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleStrokeDashArray(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleStrokeDashArray(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleStrokeWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleStrokeWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleStrokeWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleStrokeWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleText(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleText(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleText(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleText(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleTheC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleTheC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleTheC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleTheC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleTheT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleTheT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleTheT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleTheT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleTheZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleTheZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleTheZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleTheZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleTransform(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleTransform(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleTransform(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleTransform(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleVisible(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleVisible(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleVisible(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleVisible(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleWidth(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleWidth(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleWidth(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleWidth(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleX(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleX(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleX(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleX(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectangleY(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getRectangleY(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getRectangleY(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRectangleY(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRectX1() - Method in class loci.poi.ddf.EscherSpgrRecord
The starting top-left coordinate of child records.
getRectX2() - Method in class loci.poi.ddf.EscherSpgrRecord
The starting bottom-right coordinate of child records.
getRectY1() - Method in class loci.poi.ddf.EscherSpgrRecord
The starting top-left coordinate of child records.
getRectY2() - Method in class loci.poi.ddf.EscherSpgrRecord
The starting bottom-right coordinate of child records.
getRed(int) - Method in class loci.formats.gui.Index16ColorModel
 
getRed(int) - Method in class loci.formats.gui.SignedColorModel
 
getRed(Object) - Method in class loci.formats.gui.SignedColorModel
 
getRed(int) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getRed(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getRed() - Method in class loci.poi.ddf.EscherRGBProperty
 
getRed() - Method in class ome.xml.model.primitives.Color
Returns the red component of this color.
getReds() - Method in class loci.formats.gui.Index16ColorModel
Return the array of red color components.
getRef() - Method in class loci.poi.ddf.EscherBSERecord
The reference count of this blip.
getReference() - Method in class loci.poi.hssf.usermodel.HSSFName
gets the reference of the named range
getReferences() - Method in interface ome.xml.model.OMEModel
 
getReferences() - Method in class ome.xml.model.OMEModelImpl
 
getReferenceType() - Method in class loci.poi.hssf.record.LinkedDataRecord
Get the reference type field for the LinkedData record.
getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefAPtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNAPtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNPtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNVPtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefVPtg
 
getRefractiveIndex() - Method in class loci.formats.in.ND2Handler
 
getRefractiveIndex() - Method in class ome.xml.model.ObjectiveSettings
 
getREFRecordAt(int) - Method in class loci.poi.hssf.record.ExternSheetRecord
returns the REF record (ExternSheetSubRecord)
getRefreshAll() - Method in class loci.poi.hssf.record.RefreshAllRecord
get whether to refresh all external data when loading a sheet
getRelativeTime() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the relativeTime associated with this Frame.
getRemainingData() - Method in class loci.poi.ddf.EscherBSERecord
Any remaining data in this record.
getRemainingData() - Method in class loci.poi.ddf.EscherClientAnchorRecord
Any remaining data in the record
getRemainingData() - Method in class loci.poi.ddf.EscherClientDataRecord
Any data recording this record.
getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getRenderingHints() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getRenderingHints() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getReorderedIndex(IFormatReader, String, int) - Static method in class loci.formats.FormatTools
Converts index from the given dimension order to the reader's native one.
getReorderedIndex(String, String, int, int, int, int, int) - Static method in class loci.formats.FormatTools
Converts index from one dimension order to another.
getRepetitionRate() - Method in class ome.xml.model.Laser
 
getRequiredDirectories(String[]) - Method in class loci.formats.FormatReader
 
getRequiredDirectories(String[]) - Method in interface loci.formats.IFormatReader
Returns the number of parent directories that are important when processing the given list of files.
getRequiredDirectories(String[]) - Method in class loci.formats.ImageReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.BrukerReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.CellVoyagerReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.L2DReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.MIASReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.OperettaReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.ReaderWrapper
 
getRequiredVersion() - Method in class loci.poi.hssf.record.BOFRecord
get the minimum version required to read this file
getReserved() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
 
getReserved() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
 
getReserved() - Method in class loci.poi.hssf.record.WindowTwoRecord
get the reserved bits - why would you do this?
getReserved1() - Method in class loci.poi.hssf.record.AxisRecord
Get the reserved1 field for the Axis record.
getReserved1() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
Get the reserved1 field for the CommonObjectData record.
getReserved2() - Method in class loci.poi.hssf.record.AxisRecord
Get the reserved2 field for the Axis record.
getReserved2() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
Get the reserved2 field for the CommonObjectData record.
getReserved2() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getReserved3() - Method in class loci.poi.hssf.record.AxisRecord
Get the reserved3 field for the Axis record.
getReserved3() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
Get the reserved3 field for the CommonObjectData record.
getReserved3() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getReserved4() - Method in class loci.poi.hssf.record.AxisRecord
Get the reserved4 field for the Axis record.
getReserved4() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Get the reserved4 field for the TextObjectBase record.
getReserved5() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Get the reserved5 field for the TextObjectBase record.
getReserved6() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Get the reserved6 field for the TextObjectBase record.
getReserved7() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Get the reserved7 field for the TextObjectBase record.
getResetMQ() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets resetMQ
getResolution() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam
Gets resolution.
getResolution() - Method in class loci.formats.FormatReader
 
getResolution() - Method in interface loci.formats.IFormatReader
Get the current resolution level.
getResolution() - Method in class loci.formats.ImageReader
 
getResolution() - Method in class loci.formats.ReaderWrapper
 
getResolution(ImageReader) - Method in class loci.poi.hssf.usermodel.HSSFPicture
The metadata of PNG and JPEG can contain the width of a pixel in millimeters.
getResolutionCount() - Method in class loci.formats.FormatReader
 
getResolutionCount() - Method in interface loci.formats.IFormatReader
Return the number of resolutions for the current series.
getResolutionCount() - Method in class loci.formats.ImageReader
 
getResolutionCount() - Method in class loci.formats.ReaderWrapper
 
getResolutionLevels() - Method in class loci.formats.in.JPEG2000MetadataParser
Returns the number of resolution levels the file JPEG 2000 data has.
getResolutionMultiplier() - Method in class loci.formats.tiff.IFD
Retrieve the value by which to multiply the X and Y resolution so that the resolutions are in microns per pixel.
getRestartMarkers() - Method in interface loci.formats.services.JPEGTurboService
 
getRestartMarkers() - Method in class loci.formats.services.JPEGTurboServiceImpl
 
getResult() - Method in interface mdbtools.dbengine.functions.Aggregate
 
getResult() - Method in class mdbtools.dbengine.functions.Count
 
getResult() - Method in class mdbtools.dbengine.functions.Max
 
getResult() - Method in class mdbtools.dbengine.functions.Min
 
getResult() - Method in class mdbtools.dbengine.functions.Sum
 
getResult() - Method in class mdbtools.dbengine.tasks.AggregateQuery
 
getResult() - Method in class mdbtools.dbengine.tasks.FilterData
 
getResult() - Method in class mdbtools.dbengine.tasks.LoadData
 
getResult() - Method in class mdbtools.dbengine.tasks.NonAggregateQuery
 
getResult() - Method in class mdbtools.dbengine.tasks.SimpleSort
 
getResult() - Method in interface mdbtools.dbengine.tasks.Task
 
getResULX(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the horizontal coordinate of the upper-left corner of the specified resolution in the given component of the current tile.
getResULX(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the horizontal coordinate of the upper-left corner of the specified resolution in the given component of the current tile.
getResULX(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the horizontal coordinate of the upper-left corner of the specified resolution level in the given component of the current tile.
getResULY(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the vertical coordinate of the upper-left corner of the specified component in the given component of the current tile.
getResULY(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the vertical coordinate of the upper-left corner of the specified resolution in the given component of the current tile.
getResULY(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the vertical coordinate of the upper-left corner of the specified resolution in the given component of the current tile.
getRevision(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getRevNumber() - Method in class loci.poi.hpsf.SummaryInformation
Returns the revision number (or null).
getRGB() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
getRGBChannelCount() - Method in class loci.formats.FormatReader
 
getRGBChannelCount() - Method in interface loci.formats.IFormatReader
Gets the number of channels returned with each call to openBytes.
getRGBChannelCount() - Method in class loci.formats.ImageReader
 
getRGBChannelCount() - Method in class loci.formats.ReaderWrapper
 
getRGBChannelCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getRgbColor() - Method in class loci.poi.ddf.EscherRGBProperty
 
getRgbColor() - Method in class loci.poi.hssf.record.TextRecord
Get the rgbColor field for the Text record.
getRichStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell
get the value of the cell as a string - for numeric cells we throw an exception.
getRight() - Method in class loci.poi.hssf.usermodel.HSSFFooter
Get the right side of the footer.
getRight() - Method in class loci.poi.hssf.usermodel.HSSFHeader
Get the right side of the header.
getRight() - Method in class mdbtools.dbengine.sql.Condition
 
getRight() - Method in class mdbtools.dbengine.sql.Equation
 
getRight() - Method in class mdbtools.dbengine.sql.Join
 
getRightBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the color to use for the left border
getRightBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the palette index for the right border color
getRights() - Method in class ome.xml.model.OME
 
getRightsHeld() - Method in class ome.xml.model.Rights
 
getRightsHolder() - Method in class ome.xml.model.Rights
 
getRightsRightsHeld(int) - Method in class loci.formats.meta.AggregateMetadata
 
getRightsRightsHeld(int) - Method in class loci.formats.meta.DummyMetadata
 
getRightsRightsHeld(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRightsRightsHeld(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRightsRightsHolder(int) - Method in class loci.formats.meta.AggregateMetadata
 
getRightsRightsHolder(int) - Method in class loci.formats.meta.DummyMetadata
 
getRightsRightsHolder(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getRightsRightsHolder(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRKField() - Method in class loci.poi.hssf.record.RKRecord
 
getRKNumber() - Method in class loci.poi.hssf.record.RKRecord
Extract the value of the number
getRKNumberAt(int) - Method in class loci.poi.hssf.record.MulRKRecord
returns the rk number for column (coffset = column - field_2_first_col)
getRKType() - Method in class loci.poi.hssf.record.RKRecord
Get the type of the number
getRoi() - Method in class loci.plugins.util.RecordedImageProcessor
 
getROI(int) - Method in class ome.xml.model.OME
 
getROIAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getROIAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getROIAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getROIAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getROIAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getROIAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getROIAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getROIAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getROICount() - Method in class loci.formats.meta.AggregateMetadata
 
getROICount() - Method in class loci.formats.meta.DummyMetadata
 
getROICount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getROICount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getROIDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getROIDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getROIDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getROIDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getROIID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getROIID(int) - Method in class loci.formats.meta.DummyMetadata
 
getROIID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getROIID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getROILen() - Method in class jj2000.j2k.codestream.writer.PktEncoder
Gives the length to read in current packet body to get all ROI information
getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
This functions gets a DataBlk the size of the current code-block an fills this block with the ROI mask.
getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator
This functions gets a DataBlk the size of the current code-block and fills this block with the ROI mask.
getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator
This functions gets a DataBlk with the size of the current code-block and fills it with the ROI mask.
getROIMaskGenerator() - Method in class jj2000.j2k.roi.encoder.ROIScaler
This function returns the ROI mask generator.
getROIName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getROIName(int) - Method in class loci.formats.meta.DummyMetadata
 
getROIName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getROIName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getROINamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getROINamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getROINamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getROINamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getROIs() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets ROIs
getROIs() - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator
This function returns the ROIs in the image
getROIs() - Method in class loci.formats.in.ND2Handler
 
getRoot() - Method in class loci.formats.meta.AggregateMetadata
Unsupported with an AggregateMetadata.
getRoot() - Method in class loci.formats.meta.DummyMetadata
 
getRoot() - Method in class loci.formats.meta.FilterMetadata
 
getRoot() - Method in interface loci.formats.meta.MetadataStore
 
getRoot() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getRoot() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
get the root entry
getRoot() - Method in class loci.poi.poifs.property.PropertyTable
Get the root property
getRootIFD() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getRootName() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getRotation() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the degree of rotation.
getRotation() - Method in class loci.poi.hssf.record.TextRecord
 
getRotation() - Method in class loci.poi.hssf.record.TickRecord
rotate text (0=none, 1=normal, 2=90 degrees counterclockwise, 3=90 degrees clockwise)
getRotation() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the degree of rotation for the text in the cell
getRotationTransform(double) - Method in class loci.formats.FormatReader
 
getRow(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getRow(int) - Method in class loci.poi.hssf.model.Sheet
get the NEXT (from LOC) RowRecord where rownumber matches the given rownum.
getRow() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getRow() - Method in class loci.poi.hssf.record.BlankRecord
get the row this cell occurs on
getRow() - Method in class loci.poi.hssf.record.BoolErrRecord
 
getRow() - Method in interface loci.poi.hssf.record.CellValueRecordInterface
get the row this cell occurs on
getRow() - Method in class loci.poi.hssf.record.formula.ExpPtg
 
getRow() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getRow() - Method in class loci.poi.hssf.record.formula.ReferencePtg
Returns the row number as a short, which will be wrapped (negative) for values between 32769 and 65535
getRow() - Method in class loci.poi.hssf.record.FormulaRecord
 
getRow() - Method in class loci.poi.hssf.record.LabelRecord
 
getRow() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
getRow() - Method in class loci.poi.hssf.record.MulBlankRecord
get the row number of the cells this represents
getRow() - Method in class loci.poi.hssf.record.MulRKRecord
 
getRow() - Method in class loci.poi.hssf.record.NoteRecord
Return the row that contains the comment
getRow() - Method in class loci.poi.hssf.record.NumberRecord
 
getRow() - Method in class loci.poi.hssf.record.RKRecord
 
getRow() - Method in class loci.poi.hssf.usermodel.HSSFComment
Return the row of the cell that contains the comment
getRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Returns the logical row (not physical) 0-based.
getRow() - Method in class loci.poi.hssf.util.CellReference
 
getRow(int) - Method in class mdbtools.dbengine.MemoryData
 
getRow() - Method in class ome.xml.model.Well
 
getRow1() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The row number for the top-left corner of the shape.
getRow1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
getRow2() - Method in class loci.poi.ddf.EscherClientAnchorRecord
The row number for the bottom-right corner of the current shape.
getRow2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
getRowAsInt() - Method in class loci.poi.hssf.record.formula.ReferencePtg
Returns the row number as an int, between 0 and 65535
getRowBlockCount() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
Returns the number of row blocks.
getRowBlockSize(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getRowBreaks() - Method in class loci.poi.hssf.model.Sheet
Returns all the row page breaks
getRowBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Retrieves all the horizontal page breaks
getRowCellBlockSize(int, int) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
Tallies a count of the size of the cell records that are attached to the rows in the range specified.
getRowCount(int) - Method in interface loci.formats.services.MetakitService
 
getRowCount(String) - Method in interface loci.formats.services.MetakitService
 
getRowCount(int) - Method in class loci.formats.services.MetakitServiceImpl
 
getRowCount(String) - Method in class loci.formats.services.MetakitServiceImpl
 
getRowCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg
 
getRowCount(int) - Method in class ome.metakit.MetakitReader
Retrieve the number of rows in the table with the given index.
getRowCount(String) - Method in class ome.metakit.MetakitReader
Retrieve the number of rows in the named table.
getRowCountForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
Returns the number of physical rows within a block
getRowData(int, String) - Method in interface loci.formats.services.MetakitService
 
getRowData(int, int) - Method in interface loci.formats.services.MetakitService
 
getRowData(int, String) - Method in class loci.formats.services.MetakitServiceImpl
 
getRowData(int, int) - Method in class loci.formats.services.MetakitServiceImpl
 
getRowData(int, int) - Method in class ome.metakit.MetakitReader
Retrieve the given row of data from the table with the given index.
getRowData(int, String) - Method in class ome.metakit.MetakitReader
Retrieve the given row of data from the named table.
getRowFrom() - Method in class loci.poi.hssf.util.Region
get the upper left hand corner row number
getRowHeight() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
get the default row height
getRowLevelMax() - Method in class loci.poi.hssf.record.GutsRecord
get the maximum outline level for the row gutter.
getRowNamingConvention() - Method in class ome.xml.model.Plate
 
getRowNum() - Method in class loci.poi.hssf.usermodel.HSSFRow
get row number this row represents
getRowNumber() - Method in class loci.poi.hssf.record.RowRecord
get the logical row number for this row (0 based index)
getRowOffset() - Method in class loci.poi.hssf.record.DBCellRecord
gets offset from the start of this DBCellRecord to the start of the first cell in the next DBCell block.
getRowRecord() - Method in class loci.poi.hssf.usermodel.HSSFRow
get the lowlevel RowRecord represented by this object - should only be called by other parts of the high level API
getRows() - Method in class ome.xml.model.Plate
 
getRowsPerStrip() - Method in class loci.formats.tiff.IFD
Retrieves the number of rows per strip for image (TIFF tag RowsPerStrip) from this IFD.
getRowSumsBelow() - Method in class loci.poi.hssf.record.WSBoolRecord
get if row summaries appear below detail in the outline
getRowSumsBelow() - Method in class loci.poi.hssf.usermodel.HSSFSheet
get if row summaries appear below detail in the outline
getRowSumsRight() - Method in class loci.poi.hssf.record.WSBoolRecord
get if col summaries appear right of the detail in the outline
getRowSumsRight() - Method in class loci.poi.hssf.usermodel.HSSFSheet
get if col summaries appear right of the detail in the outline
getRowTo() - Method in class loci.poi.hssf.util.Region
get the lower right hand corner row number
getRPNPtg() - Method in class loci.poi.hssf.model.FormulaParser
API call to retrive the array of Ptgs created as a result of the parsing
getRPNPtg(int) - Method in class loci.poi.hssf.model.FormulaParser
 
getSample(BitBuffer, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
 
getSampleModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the SampleModel of the image.
getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getSamples(IFD, byte[]) - Method in class loci.formats.tiff.TiffParser
 
getSamples(IFD, byte[], int, int, long, long) - Method in class loci.formats.tiff.TiffParser
 
getSamples(IFD, byte[], int, int, long, long, int, int) - Method in class loci.formats.tiff.TiffParser
 
getSamplesPerPixel() - Method in class loci.formats.FormatWriter
Retrieve the number of samples per pixel for the current series.
getSamplesPerPixel() - Method in class loci.formats.tiff.IFD
Retrieves the number of samples per pixel for the image (TIFF tag SamplesPerPixel) from this IFD.
getSamplesPerPixel() - Method in class ome.xml.model.Channel
 
getSavedInPageBreakPreview() - Method in class loci.poi.hssf.record.WindowTwoRecord
was the sheet saved in page break view
getSaveLinkValues() - Method in class loci.poi.hssf.record.BookBoolRecord
get the save ext links flag
getSBAT() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter
Get the SBAT
getSBATBlockCount() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter
Get the number of SBAT blocks
getSBATStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getScale() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns true when scaling of the thumbnail is desired, false if cropping is desired.
getScale() - Method in class loci.poi.hssf.record.FontBasisRecord
Get the scale field for the FontBasis record.
getScale() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getScale() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the scale.
getScanline(int) - Method in class loci.formats.codec.JPEGTileDecoder
 
getScenarioProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Answer whether scenario protection is enabled or disabled
getScreen(int) - Method in class ome.xml.model.OME
 
getScreen() - Method in class ome.xml.model.Reagent
 
getScreenAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenAnnotationRefCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenAnnotationRefCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenAnnotationRefCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenAnnotationRefCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenCount() - Method in class loci.formats.meta.AggregateMetadata
 
getScreenCount() - Method in class loci.formats.meta.DummyMetadata
 
getScreenCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenID(int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenName(int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenPlateRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenPlateRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenPlateRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenPlateRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenProtocolDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenProtocolDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenProtocolDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenProtocolDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenProtocolIdentifier(int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenProtocolIdentifier(int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenProtocolIdentifier(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenProtocolIdentifier(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenReagentSetDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenReagentSetDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenReagentSetDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenReagentSetDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenReagentSetIdentifier(int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenReagentSetIdentifier(int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenReagentSetIdentifier(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenReagentSetIdentifier(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getScreenType(int) - Method in class loci.formats.meta.AggregateMetadata
 
getScreenType(int) - Method in class loci.formats.meta.DummyMetadata
 
getScreenType(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getScreenType(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getSecondaryUID() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Retrieve the secondary UID
getSectionCount() - Method in class loci.poi.hpsf.PropertySet
Returns the number of Sections in the property set.
getSectionCount() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getSections() - Method in class loci.poi.hpsf.PropertySet
Returns the Sections in the property set.
getSections() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getSecurity() - Method in class loci.poi.hpsf.SummaryInformation
Returns a security code which is one of the following values:
getSegmentLength() - Method in class com.sun.media.imageio.stream.StreamSegment
Returns the length of the segment.
getSelected() - Method in class loci.poi.hssf.record.WindowTwoRecord
sheet tab is selected
getSelectedTab() - Method in class loci.poi.hssf.record.WindowOneRecord
get the selected tab number
getSelectedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
gets the tab whose data is actually seen when the sheet is opened.
getSelection() - Method in class loci.poi.hssf.model.Sheet
 
getSequence(int) - Method in class loci.formats.in.PrairieMetadata
Gets the Sequence at the given cycle.
getSequences() - Method in class loci.formats.in.PrairieMetadata
Gets all Sequences, ordered by cycle.
getSerialNumber() - Method in class ome.xml.model.ManufacturerSpec
 
getSeries() - Method in class loci.formats.FileStitcher
 
getSeries() - Method in class loci.formats.FormatReader
 
getSeries() - Method in class loci.formats.FormatWriter
 
getSeries() - Method in interface loci.formats.IFormatReader
Gets the currently active series.
getSeries() - Method in interface loci.formats.IFormatWriter
Returns the current series.
getSeries() - Method in class loci.formats.ImageReader
 
getSeries() - Method in class loci.formats.ImageWriter
 
getSeries() - Method in class loci.formats.ReaderWrapper
 
getSeries() - Method in class loci.formats.WriterWrapper
 
getSeries(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSeriesCount() - Method in class loci.formats.FileStitcher
 
getSeriesCount() - Method in class loci.formats.FormatReader
 
getSeriesCount() - Method in interface loci.formats.IFormatReader
Gets the number of series in this file.
getSeriesCount() - Method in class loci.formats.ImageReader
 
getSeriesCount() - Method in class loci.formats.in.ND2Handler
 
getSeriesCount() - Method in class loci.formats.ReaderWrapper
 
getSeriesCount() - Method in class loci.formats.TileStitcher
 
getSeriesCount() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getSeriesCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSeriesCount() - Method in class loci.tests.testng.Configuration
 
getSeriesIndex() - Method in class loci.poi.hssf.record.DataFormatRecord
Get the series index field for the DataFormat record.
getSeriesLabel(int) - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getSeriesMeta(String) - Method in class loci.formats.FormatReader
Gets an entry from the metadata table for the current series.
getSeriesMetadata() - Method in class loci.formats.FileStitcher
 
getSeriesMetadata() - Method in class loci.formats.FormatReader
 
getSeriesMetadata() - Method in interface loci.formats.IFormatReader
Obtains the hashtable containing metadata field/value pairs from the current series in the current file.
getSeriesMetadata() - Method in class loci.formats.ImageReader
 
getSeriesMetadata() - Method in class loci.formats.ReaderWrapper
 
getSeriesMetadataValue(String) - Method in class loci.formats.FormatReader
 
getSeriesMetadataValue(String) - Method in interface loci.formats.IFormatReader
Obtains the specified metadata field's value for the current series in the current file.
getSeriesMetadataValue(String) - Method in class loci.formats.ImageReader
 
getSeriesMetadataValue(String) - Method in class loci.formats.ReaderWrapper
 
getSeriesMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
getSeriesName(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getSeriesNumber() - Method in class loci.poi.hssf.record.DataFormatRecord
Get the series number field for the DataFormat record.
getSeriesNumbers() - Method in class loci.poi.hssf.record.SeriesListRecord
Get the series numbers field for the SeriesList record.
getSeriesUsedFiles() - Method in class loci.formats.FileStitcher
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher
 
getSeriesUsedFiles() - Method in class loci.formats.FormatReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader
 
getSeriesUsedFiles() - Method in interface loci.formats.IFormatReader
Returns an array of filenames needed to open the current series.
getSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader
Returns an array of filenames needed to open the current series.
getSeriesUsedFiles() - Method in class loci.formats.ImageReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AFIReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AnalyzeReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.APLReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BDReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BioRadReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BrukerReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellomicsReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellSensReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellVoyagerReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellWorxReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DeltavisionReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DicomReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FakeReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FlexReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FujiReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FV1000Reader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HamamatsuVMSReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HitachiReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ICSReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImagicReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImprovisionTiffReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.InCellReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.JEOLReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.L2DReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.LeicaReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MetamorphReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MIASReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MicromanagerReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NDPISReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NiftiReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NRRDReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OMETiffReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OperettaReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PCORAWReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PDSReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PerkinElmerReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PrairieReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScanrReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScreenReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.SlidebookTiffReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TCSReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TiffReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TillVisionReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TrestleReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VarianFDFReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VisitechReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VolocityReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissCZIReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissLSMReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissTIFFReader
 
getSeriesUsedFiles() - Method in class loci.formats.ReaderWrapper
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
 
getService() - Method in class loci.formats.Memoizer
 
getSHA1() - Method in class ome.xml.model.External
 
getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
Returns a TIFFIFD wherein all fields from the BaselineTIFFTagSet are copied by value and all other fields copied by reference.
getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
Returns a TIFFImageMetadata wherein all fields in the root IFD from the BaselineTIFFTagSet are copied by value and all other fields copied by reference.
getShape(int) - Method in class ome.xml.model.Union
 
getShapeCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getShapeCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getShapeCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getShapeCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getShapeId() - Method in class loci.poi.ddf.EscherSpRecord
 
getShapeId() - Method in class loci.poi.hssf.record.NoteRecord
Object id for OBJ record that contains the comment
getShapeIdMax() - Method in class loci.poi.ddf.EscherDggRecord
 
getShapeType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getShapeType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getShapeType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getShapeType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getShapeType() - Method in class loci.poi.hssf.usermodel.HSSFSimpleShape
Gets the shape type.
getSheet() - Method in class loci.poi.hssf.usermodel.HSSFSheet
used internally in the API to get the low level Sheet record represented by this Object.
getSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Get sheet with the given name
getSheetAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Get the HSSFSheet object at the given index.
getSheetIndex(String) - Method in class loci.poi.hssf.model.Workbook
get the sheet's index
getSheetIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Returns the index of the sheet by his name
getSheetIndex(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Returns the index of the given sheet
getSheetIndexFromExternSheetIndex(int) - Method in class loci.poi.hssf.model.Workbook
Finds the sheet index for a particular external sheet number.
getSheetName(int) - Method in class loci.poi.hssf.model.Workbook
gets the name for a given sheet.
getSheetname() - Method in class loci.poi.hssf.record.BoundSheetRecord
get the sheetname for this sheet.
getSheetName() - Method in class loci.poi.hssf.usermodel.HSSFName
Get the sheets name which this named range is referenced to
getSheetName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
get the sheet name
getSheetName() - Method in class loci.poi.hssf.util.CellReference
 
getSheetName() - Method in class loci.poi.hssf.util.RangeAddress
 
getSheetName(int) - Method in class loci.poi.hssf.util.SheetReferences
 
getSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord
get the length of the sheetname in characters
getSheetReferences() - Method in class loci.poi.hssf.model.Workbook
 
getShort(byte[], int) - Static method in class loci.poi.util.LittleEndian
get a short value from a byte array
getShort(byte[]) - Static method in class loci.poi.util.LittleEndian
get a short value from the beginning of a byte array
getShortArray(byte[], int) - Static method in class loci.poi.util.LittleEndian
get a short array from a byte array.
getShortDescription() - Method in interface loci.poi.poifs.dev.POIFSViewable
Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.
getShortDescription() - Method in class loci.poi.poifs.filesystem.DirectoryNode
Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.
getShortDescription() - Method in class loci.poi.poifs.filesystem.DocumentNode
Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.
getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSDocument
Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.
getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.
getShortDescription() - Method in class loci.poi.poifs.property.Property
Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.
getShortElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Gets its short value from an IIOMetadataNode.
getShortRawValue(short) - Method in class loci.poi.util.BitField
Obtain the value for the specified BitField, unshifted
getShorts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of unsigned shorts, one per channel.
getShorts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of unsigned shorts, one per channel.
getShorts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Extracts pixel data as arrays of unsigned shorts, one per channel.
getShortValue(short) - Method in class loci.poi.util.BitField
Obtain the value for the specified BitField, appropriately shifted right, as a short.
getShowMetadataInfo() - Method in class loci.plugins.in.ImporterOptions
 
getShowOMEXMLInfo() - Method in class loci.plugins.in.ImporterOptions
 
getShowROIsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getShrinkToFit() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether to shrink the text to fit
getSid() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getSid() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
It's an aggregate...
getSid() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
return the non static version of the id for this record.
getSid() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
return the non static version of the id for this record.
getSid() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
return the non static version of the id for this record.
getSid() - Method in class loci.poi.hssf.record.AreaFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.AreaRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisLineFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisOptionsRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisParentRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisUsedRecord
 
getSid() - Method in class loci.poi.hssf.record.BackupRecord
 
getSid() - Method in class loci.poi.hssf.record.BarRecord
 
getSid() - Method in class loci.poi.hssf.record.BeginRecord
 
getSid() - Method in class loci.poi.hssf.record.BlankRecord
return the non static version of the id for this record.
getSid() - Method in class loci.poi.hssf.record.BOFRecord
 
getSid() - Method in class loci.poi.hssf.record.BookBoolRecord
 
getSid() - Method in class loci.poi.hssf.record.BoolErrRecord
 
getSid() - Method in class loci.poi.hssf.record.BottomMarginRecord
 
getSid() - Method in class loci.poi.hssf.record.BoundSheetRecord
 
getSid() - Method in class loci.poi.hssf.record.CalcCountRecord
 
getSid() - Method in class loci.poi.hssf.record.CalcModeRecord
 
getSid() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
 
getSid() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.ChartRecord
 
getSid() - Method in class loci.poi.hssf.record.CodepageRecord
 
getSid() - Method in class loci.poi.hssf.record.ColumnInfoRecord
 
getSid() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
getSid() - Method in class loci.poi.hssf.record.ContinueRecord
 
getSid() - Method in class loci.poi.hssf.record.CountryRecord
 
getSid() - Method in class loci.poi.hssf.record.DataFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.DateWindow1904Record
 
getSid() - Method in class loci.poi.hssf.record.DatRecord
 
getSid() - Method in class loci.poi.hssf.record.DBCellRecord
 
getSid() - Method in class loci.poi.hssf.record.DefaultColWidthRecord
 
getSid() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
getSid() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
 
getSid() - Method in class loci.poi.hssf.record.DeltaRecord
 
getSid() - Method in class loci.poi.hssf.record.DimensionsRecord
 
getSid() - Method in class loci.poi.hssf.record.DrawingGroupRecord
 
getSid() - Method in class loci.poi.hssf.record.DrawingRecord
 
getSid() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer
 
getSid() - Method in class loci.poi.hssf.record.DrawingSelectionRecord
 
getSid() - Method in class loci.poi.hssf.record.DSFRecord
 
getSid() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
getSid() - Method in class loci.poi.hssf.record.EndRecord
 
getSid() - Method in class loci.poi.hssf.record.EndSubRecord
 
getSid() - Method in class loci.poi.hssf.record.EOFRecord
 
getSid() - Method in class loci.poi.hssf.record.EscherAggregate
 
getSid() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.ExternSheetRecord
return the non static version of the id for this record.
getSid() - Method in class loci.poi.hssf.record.ExternSheetSubRecord
return the non static version of the id for this record.
getSid() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
getSid() - Method in class loci.poi.hssf.record.ExtSSTRecord
 
getSid() - Method in class loci.poi.hssf.record.FilePassRecord
 
getSid() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getSid() - Method in class loci.poi.hssf.record.FnGroupCountRecord
 
getSid() - Method in class loci.poi.hssf.record.FontBasisRecord
 
getSid() - Method in class loci.poi.hssf.record.FontIndexRecord
 
getSid() - Method in class loci.poi.hssf.record.FontRecord
 
getSid() - Method in class loci.poi.hssf.record.FooterRecord
 
getSid() - Method in class loci.poi.hssf.record.FormatRecord
 
getSid() - Method in class loci.poi.hssf.record.FormulaRecord
 
getSid() - Method in class loci.poi.hssf.record.FrameRecord
 
getSid() - Method in class loci.poi.hssf.record.GridsetRecord
 
getSid() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord
 
getSid() - Method in class loci.poi.hssf.record.GutsRecord
 
getSid() - Method in class loci.poi.hssf.record.HCenterRecord
 
getSid() - Method in class loci.poi.hssf.record.HeaderRecord
 
getSid() - Method in class loci.poi.hssf.record.HideObjRecord
 
getSid() - Method in class loci.poi.hssf.record.HorizontalPageBreakRecord
 
getSid() - Method in class loci.poi.hssf.record.IndexRecord
 
getSid() - Method in class loci.poi.hssf.record.InterfaceEndRecord
 
getSid() - Method in class loci.poi.hssf.record.InterfaceHdrRecord
 
getSid() - Method in class loci.poi.hssf.record.IterationRecord
 
getSid() - Method in class loci.poi.hssf.record.LabelRecord
 
getSid() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
getSid() - Method in class loci.poi.hssf.record.LeftMarginRecord
 
getSid() - Method in class loci.poi.hssf.record.LegendRecord
 
getSid() - Method in class loci.poi.hssf.record.LineFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.LinkedDataRecord
 
getSid() - Method in class loci.poi.hssf.record.MergeCellsRecord
 
getSid() - Method in class loci.poi.hssf.record.MMSRecord
 
getSid() - Method in class loci.poi.hssf.record.MulBlankRecord
 
getSid() - Method in class loci.poi.hssf.record.MulRKRecord
 
getSid() - Method in class loci.poi.hssf.record.NameRecord
return the non static version of the id for this record.
getSid() - Method in class loci.poi.hssf.record.NoteRecord
 
getSid() - Method in class loci.poi.hssf.record.NoteStructureSubRecord
 
getSid() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
 
getSid() - Method in class loci.poi.hssf.record.NumberRecord
 
getSid() - Method in class loci.poi.hssf.record.ObjectLinkRecord
 
getSid() - Method in class loci.poi.hssf.record.ObjectProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.ObjRecord
 
getSid() - Method in class loci.poi.hssf.record.PageBreakRecord
 
getSid() - Method in class loci.poi.hssf.record.PaletteRecord
 
getSid() - Method in class loci.poi.hssf.record.PaneRecord
 
getSid() - Method in class loci.poi.hssf.record.PasswordRecord
 
getSid() - Method in class loci.poi.hssf.record.PasswordRev4Record
 
getSid() - Method in class loci.poi.hssf.record.PlotAreaRecord
 
getSid() - Method in class loci.poi.hssf.record.PlotGrowthRecord
 
getSid() - Method in class loci.poi.hssf.record.PrecisionRecord
 
getSid() - Method in class loci.poi.hssf.record.PrintGridlinesRecord
 
getSid() - Method in class loci.poi.hssf.record.PrintHeadersRecord
 
getSid() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getSid() - Method in class loci.poi.hssf.record.ProtectionRev4Record
 
getSid() - Method in class loci.poi.hssf.record.ProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.RecalcIdRecord
 
getSid() - Method in class loci.poi.hssf.record.Record
return the non static version of the id for this record.
getSid() - Method in class loci.poi.hssf.record.RecordInputStream
 
getSid() - Method in class loci.poi.hssf.record.RefModeRecord
 
getSid() - Method in class loci.poi.hssf.record.RefreshAllRecord
 
getSid() - Method in class loci.poi.hssf.record.RightMarginRecord
 
getSid() - Method in class loci.poi.hssf.record.RKRecord
 
getSid() - Method in class loci.poi.hssf.record.RowRecord
 
getSid() - Method in class loci.poi.hssf.record.SaveRecalcRecord
 
getSid() - Method in class loci.poi.hssf.record.ScenarioProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.SCLRecord
 
getSid() - Method in class loci.poi.hssf.record.SelectionRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesIndexRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesListRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesTextRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
 
getSid() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getSid() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
 
getSid() - Method in class loci.poi.hssf.record.SSTRecord
 
getSid() - Method in class loci.poi.hssf.record.StringRecord
return the non static version of the id for this record.
getSid() - Method in class loci.poi.hssf.record.StyleRecord
 
getSid() - Method in class loci.poi.hssf.record.SupBookRecord
 
getSid() - Method in class loci.poi.hssf.record.TabIdRecord
 
getSid() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getSid() - Method in class loci.poi.hssf.record.TextRecord
 
getSid() - Method in class loci.poi.hssf.record.TickRecord
 
getSid() - Method in class loci.poi.hssf.record.TopMarginRecord
 
getSid() - Method in class loci.poi.hssf.record.UnicodeString
 
getSid() - Method in class loci.poi.hssf.record.UnitsRecord
 
getSid() - Method in class loci.poi.hssf.record.UnknownRecord
 
getSid() - Method in class loci.poi.hssf.record.UseSelFSRecord
 
getSid() - Method in class loci.poi.hssf.record.ValueRangeRecord
 
getSid() - Method in class loci.poi.hssf.record.VCenterRecord
 
getSid() - Method in class loci.poi.hssf.record.VerticalPageBreakRecord
 
getSid() - Method in class loci.poi.hssf.record.WindowOneRecord
 
getSid() - Method in class loci.poi.hssf.record.WindowProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.WindowTwoRecord
 
getSid() - Method in class loci.poi.hssf.record.WriteAccessRecord
 
getSid() - Method in class loci.poi.hssf.record.WriteProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.WSBoolRecord
 
getSignificantBits() - Method in class ome.xml.model.Pixels
 
getSimpleShortArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian
get a short array from a byte array.
getSingleSection() - Method in class loci.poi.hpsf.PropertySet
If the PropertySet has only a single section this method returns it.
getSize(int) - Static method in class jj2000.j2k.image.DataBlk
Returns the size in bits, given the data type.
getSize() - Method in class jj2000.j2k.util.ThreadPool
Returns the size of the pool.
getSize(Image) - Static method in class loci.formats.gui.AWTImageTools
Gets the width and height of the given AWT image, waiting for it to finish loading if necessary.
getSize() - Method in class loci.plugins.util.BFVirtualStack
 
getSize() - Method in class loci.poi.ddf.EscherBSERecord
Blip size in stream.
getSize() - Method in class loci.poi.hpsf.MutableSection
Returns the section's size.
getSize() - Method in class loci.poi.hpsf.Property
Returns the property's size in bytes.
getSize() - Method in class loci.poi.hpsf.Section
Returns the section's size in bytes.
getSize() - Method in class loci.poi.hssf.model.Sheet
 
getSize() - Method in class loci.poi.hssf.model.Workbook
 
getSize() - Method in interface loci.poi.hssf.record.CustomField
 
getSize() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.AddPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ArrayPtg
This size includes the size of the array Ptg plus the Array Ptg Token value size
getSize() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.BoolPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ConcatPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.DividePtg
 
getSize() - Method in class loci.poi.hssf.record.formula.EqualPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ErrPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ExpPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.FuncPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.FuncVarPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg
Get the size of the sid
getSize() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.IntPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.LessThanPtg
Get the size of the sid
getSize() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.MissingArgPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.NamePtg
 
getSize() - Method in class loci.poi.hssf.record.formula.NameXPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.NumberPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.PercentPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.PowerPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.Ptg
 
getSize() - Method in class loci.poi.hssf.record.formula.RangePtg
 
getSize() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getSize() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.StringPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.SubtractPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.UnionPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.UnknownPtg
 
getSize() - Method in class loci.poi.hssf.record.LinkedDataFormulaField
 
getSize() - Method in interface loci.poi.poifs.filesystem.DocumentEntry
get the zize of the document, in bytes
getSize() - Method in class loci.poi.poifs.filesystem.DocumentNode
get the zize of the document, in bytes
getSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument
 
getSize() - Method in class loci.poi.poifs.property.Property
find out the document size
getSize() - Method in class ome.xml.model.BinaryFile
 
getSizeC() - Method in class loci.formats.ChannelFiller
 
getSizeC() - Method in class loci.formats.DimensionSwapper
 
getSizeC() - Method in class loci.formats.FileStitcher
 
getSizeC() - Method in class loci.formats.FormatReader
 
getSizeC() - Method in interface loci.formats.IFormatReader
Gets the size of the C dimension.
getSizeC() - Method in class loci.formats.ImageReader
 
getSizeC() - Method in class loci.formats.ReaderWrapper
 
getSizeC() - Method in interface loci.formats.services.WlzService
Gets number of channels.
getSizeC() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeC() - Method in class loci.tests.testng.Configuration
 
getSizeC() - Method in class ome.xml.model.Pixels
 
getSizeEMU() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getSizeEMU() - Method in class loci.poi.ddf.EscherPictBlip
 
getSizeOfElements() - Method in class loci.poi.ddf.EscherArrayProperty
 
getSizeOfType(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Returns the number of bytes used to store a value of the given data type.
getSizeT() - Method in class loci.formats.DimensionSwapper
 
getSizeT() - Method in class loci.formats.FileStitcher
 
getSizeT() - Method in class loci.formats.FormatReader
 
getSizeT() - Method in interface loci.formats.IFormatReader
Gets the size of the T dimension.
getSizeT() - Method in class loci.formats.ImageReader
 
getSizeT() - Method in class loci.formats.ReaderWrapper
 
getSizeT() - Method in interface loci.formats.services.WlzService
Gets number of time samples.
getSizeT() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeT(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeT() - Method in class loci.tests.testng.Configuration
 
getSizeT() - Method in class ome.xml.model.Pixels
 
getSizeX() - Method in class loci.formats.DimensionSwapper
 
getSizeX() - Method in class loci.formats.FileStitcher
 
getSizeX() - Method in class loci.formats.FormatReader
 
getSizeX() - Method in interface loci.formats.IFormatReader
Gets the size of the X dimension.
getSizeX() - Method in class loci.formats.ImageReader
 
getSizeX() - Method in class loci.formats.ReaderWrapper
 
getSizeX() - Method in interface loci.formats.services.WlzService
Gets width in pixels/voxels.
getSizeX() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeX() - Method in class loci.formats.TileStitcher
 
getSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeX() - Method in class loci.tests.testng.Configuration
 
getSizeX() - Method in class ome.xml.model.Pixels
 
getSizeY() - Method in class loci.formats.DimensionSwapper
 
getSizeY() - Method in class loci.formats.FileStitcher
 
getSizeY() - Method in class loci.formats.FormatReader
 
getSizeY() - Method in interface loci.formats.IFormatReader
Gets the size of the Y dimension.
getSizeY() - Method in class loci.formats.ImageReader
 
getSizeY() - Method in class loci.formats.ReaderWrapper
 
getSizeY() - Method in interface loci.formats.services.WlzService
Gets height in pixels/voxels.
getSizeY() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeY() - Method in class loci.formats.TileStitcher
 
getSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeY() - Method in class loci.tests.testng.Configuration
 
getSizeY() - Method in class ome.xml.model.Pixels
 
getSizeZ() - Method in class loci.formats.DimensionSwapper
 
getSizeZ() - Method in class loci.formats.FileStitcher
 
getSizeZ() - Method in class loci.formats.FormatReader
 
getSizeZ() - Method in interface loci.formats.IFormatReader
Gets the size of the Z dimension.
getSizeZ() - Method in class loci.formats.ImageReader
 
getSizeZ() - Method in class loci.formats.ReaderWrapper
 
getSizeZ() - Method in interface loci.formats.services.WlzService
Gets depth (number of x-y planes) in voxels.
getSizeZ() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeZ() - Method in class loci.tests.testng.Configuration
 
getSizeZ() - Method in class ome.xml.model.Pixels
 
getSlideCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation
Returns the slide count or 0 if the DocumentSummaryInformation does not contain a slide count.
getSmallBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument
return the array of SmallDocumentBlocks used
getSmallDocumentBlocks(RawDataBlockList, RootProperty, int) - Static method in class loci.poi.poifs.storage.SmallBlockTableReader
fetch the small document block list from an existing file
getSnapshotPixels() - Method in class loci.plugins.util.RecordedImageProcessor
 
getSOP() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets SOP.
getSOP() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets SOP
getSort() - Method in class mdbtools.dbengine.sql.OrderBy
 
getSource() - Method in class loci.formats.cache.Cache
Gets the cache's caching source.
getSource() - Method in class loci.formats.cache.CacheEvent
Gets the source of the cache update.
getSources() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
 
getSources() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getSpacing() - Method in class loci.poi.hssf.record.LegendRecord
Get the spacing field for the Legend record.
getSpContainer() - Method in class loci.poi.hssf.model.AbstractShape
 
getSpContainer() - Method in class loci.poi.hssf.model.LineShape
 
getSpContainer() - Method in class loci.poi.hssf.model.PictureShape
 
getSpContainer() - Method in class loci.poi.hssf.model.PolygonShape
 
getSpContainer() - Method in class loci.poi.hssf.model.SimpleFilledShape
 
getSpContainer() - Method in class loci.poi.hssf.model.TextboxShape
 
getSpec(int, int) - Method in class jj2000.j2k.ModuleSpec
Gets value of specified tile-component without knowing if a specific tile-component value has been previously entered.
getSpecificationTitle() - Static method in class com.sun.media.imageioimpl.common.PackageUtil
Return the Specification Title string for the package.
getSpecificBuiltinRecord(byte, int) - Method in class loci.poi.hssf.model.Workbook
Retrieves the Builtin NameRecord that matches the name and index There shouldn't be too many names to make the sequential search too slow
getSpecified() - Method in class jj2000.j2k.roi.MaxShiftSpec
 
getSpecified() - Method in class jj2000.j2k.StringSpec
 
getSpecifyRangesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSpecValType(int, int) - Method in class jj2000.j2k.ModuleSpec
Return the spec type of the given tile-component.
getSpeeds() - Method in class loci.formats.in.ND2Handler
 
getSplitChannelsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSplitFocalPlanesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSplitTimepointsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSSTIndex() - Method in class loci.poi.hssf.record.LabelSSTRecord
get the index to the string in the SSTRecord
getSSTString(int) - Method in class loci.poi.hssf.model.Workbook
given an index into the SST table, this function returns the corresponding String value
getSSTString(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Deprecated.
Do not call this method from your applications. Use the methods available in the HSSFRow to get string HSSFCells
getStackFormat() - Method in class loci.plugins.in.ImporterOptions
 
getStackFormatInfo() - Method in class loci.plugins.in.ImporterOptions
 
getStackFormats() - Method in class loci.plugins.in.ImporterOptions
 
getStackOrder() - Method in class loci.plugins.in.ImporterOptions
 
getStackOrder() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getStackOrderInfo() - Method in class loci.plugins.in.ImporterOptions
 
getStackOrders() - Method in class loci.plugins.in.ImporterOptions
 
getStackTrace(Throwable) - Static method in class loci.common.DebugTools
Extracts the given exception's corresponding stack trace to a string.
getStackTrace(Throwable) - Static method in class ome.scifio.common.DebugTools
Extracts the given exception's corresponding stack trace to a string.
getStageLabel() - Method in class loci.formats.in.MetamorphHandler
 
getStageLabel() - Method in class ome.xml.model.Image
 
getStageLabelName(int) - Method in class loci.formats.meta.AggregateMetadata
 
getStageLabelName(int) - Method in class loci.formats.meta.DummyMetadata
 
getStageLabelName(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getStageLabelName(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getStageLabelX(int) - Method in class loci.formats.meta.AggregateMetadata
 
getStageLabelX(int) - Method in class loci.formats.meta.DummyMetadata
 
getStageLabelX(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getStageLabelX(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getStageLabelY(int) - Method in class loci.formats.meta.AggregateMetadata
 
getStageLabelY(int) - Method in class loci.formats.meta.DummyMetadata
 
getStageLabelY(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getStageLabelY(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getStageLabelZ(int) - Method in class loci.formats.meta.AggregateMetadata
 
getStageLabelZ(int) - Method in class loci.formats.meta.DummyMetadata
 
getStageLabelZ(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getStageLabelZ(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getStagePositionX() - Method in class loci.formats.in.MetamorphHandler
 
getStagePositionY() - Method in class loci.formats.in.MetamorphHandler
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStartBlock() - Method in class loci.poi.poifs.property.Property
 
getStartBlock() - Method in class loci.poi.poifs.property.PropertyTable
Get the start block for the property table
getStartBlock() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter
get the starting block
getStartLevelROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets startLevel
getStartPos() - Method in class com.sun.media.imageio.stream.StreamSegment
Returns the starting position of the segment.
getStartRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
Returns the physical row number of the first row in a block
getStartTime() - Method in class ome.xml.model.PlateAcquisition
 
getStatistics(int, int, double, double) - Method in class loci.plugins.util.VirtualImagePlus
 
getStatus() - Method in class ome.xml.model.Plate
 
getStatusBarLength() - Method in class loci.poi.hssf.record.NameRecord
get the status bar text length
getStatusBarText() - Method in class loci.poi.hssf.record.NameRecord
gets the status bar text
getStatusMessage() - Method in class loci.common.StatusEvent
Gets status message.
getStatusMessage() - Method in class ome.scifio.common.StatusEvent
Gets status message.
getStep() - Method in class loci.formats.FilePattern
 
getStep() - Method in class loci.formats.FilePatternBlock
 
getStep(int) - Static method in enum loci.plugins.in.ImportStep
 
getStep() - Method in enum loci.plugins.in.ImportStep
 
getStitchTilesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getStorageClsid() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
Gets the storage clsid of the directory entry
getStorageClsid() - Method in class loci.poi.poifs.filesystem.DirectoryNode
Gets the storage clsid of the directory entry
getStorageClsid() - Method in class loci.poi.poifs.property.Property
Sets the storage clsid, which is the Class ID of a COM object which reads and writes this stream
getStr() - Method in class loci.poi.hssf.record.TextObjectRecord
 
getStrategy() - Method in class loci.formats.cache.Cache
Gets the cache's caching strategy.
getStream() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
Returns the ImageOutputStream that will be written.
getStream() - Method in class loci.formats.tiff.TiffParser
Gets the stream from which TIFF data is being parsed.
getStream() - Method in class loci.formats.tiff.TiffSaver
Gets the stream from which TIFF data is being saved.
getStream() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent
 
getStream() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent
 
getStreamId() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
Gets the stream ID containing the actual data.
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getStreamMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getStreamPos() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
getStreamPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
getStreams() - Method in class loci.formats.tools.AmiraParameters
 
getStreamSegment(long, int) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper
Returns a StreamSegment object indicating the location of the initial portion of a desired segment in the source stream.
getStreamSegment(long, int, StreamSegment) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper
Sets the values of a StreamSegment object indicating the location of the initial portion of a desired segment in the source stream.
getStrikeout() - Method in class loci.poi.hssf.usermodel.HSSFFont
get whether to use a strikeout horizontal line through the text or not
getString(String, String) - Static method in class com.sun.media.imageioimpl.common.I18NImpl
Returns the message string with the specified key from the "properties" file in the package containing the class with the specified name.
getString(int) - Method in class loci.poi.hssf.record.SSTRecord
Get a particular string by its index
getString() - Method in class loci.poi.hssf.record.StringRecord
 
getString() - Method in class loci.poi.hssf.record.UnicodeString
get the actual string this contains as a java String object
getString() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
Returns the plain string representation.
getString() - Method in class loci.poi.hssf.usermodel.HSSFTextbox
 
getStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell
Deprecated.
Use the HSSFRichTextString return
getStringElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Gets its String value from an IIOMetadataNode.
getStringLength() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
 
getStringLength() - Method in class loci.poi.hssf.record.LabelRecord
get the number of characters this string contains
getStringOption(String) - Method in class loci.plugins.prefs.OptionsList
Gets the string option with the given key.
getStringRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getStringValue() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getStringWidth(String) - Method in class loci.plugins.util.RecordedImageProcessor
 
getStringWidth(String) - Method in class loci.poi.hssf.usermodel.FontDetails
Gets the width of all characters in a string.
getStripByteCounts() - Method in class loci.formats.tiff.IFD
Retrieves strip byte counts for the image (TIFF tag StripByteCounts) from this IFD.
getStripOffsets() - Method in class loci.formats.tiff.IFD
Retrieves the strip offsets for the image (TIFF tag StripOffsets) from this IFD.
getStripOrTileByteCountsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getStripOrTileOffsetsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getStroke() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getStroke() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getStrokeColor() - Method in class ome.xml.model.Shape
 
getStrokeDashArray() - Method in class ome.xml.model.Shape
 
getStrokeWidth() - Method in class ome.xml.model.Shape
 
getStructuredAnnotations() - Method in class ome.xml.model.BooleanAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.CommentAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.DoubleAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.FileAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.ListAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.LongAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.OME
 
getStructuredAnnotations() - Method in class ome.xml.model.TagAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.TermAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.TimestampAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.XMLAnnotation
 
getStylesheet(String, Class<?>) - Static method in class loci.common.xml.XMLTools
Gets an XSLT template from the given resource location.
getStylesheet(String, Class<?>) - Static method in class ome.scifio.xml.XMLTools
Gets an XSLT template from the given resource location.
getSubband(int, int) - Method in class jj2000.j2k.wavelet.Subband
Returns a reference to the Subband element to which the specified point belongs.
getSubbandByIdx(int, int) - Method in class jj2000.j2k.wavelet.Subband
Returns a subband element in the tree, given its resolution level and subband index.
getSubbandRectROIMask(int, int) - Method in class jj2000.j2k.roi.encoder.SubbandROIMask
Returns a reference to the Subband mask element to which the specified point belongs.
getSubexpressionLength() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
 
getSubimage(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
Returns a subimage of the specified image.
getSubimage(byte[], byte[], int, int, int, int, int, int, int, int, boolean) - Static method in class loci.formats.ImageTools
 
getSubject() - Method in class loci.poi.hpsf.SummaryInformation
Returns the subject (or null).
getSubRecords() - Method in class loci.poi.hssf.record.ObjRecord
 
getSuffix() - Method in class loci.formats.FilePattern
Gets the pattern's text string after all numerical ranges.
getSuffixes() - Method in class loci.formats.FormatHandler
 
getSuffixes() - Method in interface loci.formats.IFormatHandler
Gets the default file suffixes for this file format.
getSuffixes() - Method in class loci.formats.ImageReader
 
getSuffixes() - Method in class loci.formats.ImageWriter
 
getSuffixes() - Method in class loci.formats.ReaderWrapper
 
getSuffixes() - Method in class loci.formats.WriterWrapper
 
getSummaryInformation() - Method in class loci.poi.POIDocument
Fetch the Summary Information of the document
getSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap
 
getSupbookpos() - Method in class loci.poi.hssf.model.WorkbookRecordList
Returns the supbookpos.
getSuperSubScript() - Method in class loci.poi.hssf.record.FontRecord
get the type of super or subscript for the font
getSupPixelTypes() - Method in interface loci.formats.services.WlzService
Gets supported pixel types.
getSupPixelTypes() - Method in class loci.formats.services.WlzServiceImpl
 
getSupportedMetadataLevels() - Method in class loci.formats.DelegateReader
 
getSupportedMetadataLevels() - Method in class loci.formats.FormatReader
 
getSupportedMetadataLevels() - Method in class loci.formats.ImageReader
 
getSupportedMetadataLevels() - Method in interface loci.formats.IMetadataConfigurable
 
getSupportedMetadataLevels() - Method in class loci.formats.ReaderWrapper
 
getSwapDimensionsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the negative support of the high-pass synthesis filter.
getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the negative support of the high-pass synthesis filter.
getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the negative support of the high-pass synthesis filter.
getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the negative support of the high-pass synthesis filter.
getSynHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the negative support of the high-pass synthesis filter.
getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the positive support of the high-pass synthesis filter.
getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the positive support of the high-pass synthesis filter.
getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the positive support of the high-pass synthesis filter.
getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the positive support of the high-pass synthesis filter.
getSynHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the positive support of the high-pass synthesis filter.
getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the negative support of the low-pass synthesis filter.
getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the negative support of the low-pass synthesis filter.
getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the negative support of the low-pass synthesis filter.
getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the negative support of the low-pass synthesis filter.
getSynLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the negative support of the low-pass synthesis filter.
getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the positive support of the low-pass synthesis filter.
getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the positive support of the low-pass synthesis filter.
getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the positive support of the low-pass synthesis filter.
getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the positive support of the low-pass synthesis filter.
getSynLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the positive support of the low-pass synthesis filter.
getSynSubbandTree(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the subband tree, for the specified tile-component.
getSynSubbandTree(int, int) - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder
Returns the subband tree, for the specified tile-component.
getSynSubbandTree(int, int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer
Returns the subband tree, for the specified tile-component.
getSynSubbandTree(int, int) - Method in class jj2000.j2k.roi.ROIDeScaler
Returns the subband tree, for the specified tile-component.
getSynSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the specified synthesis subband tree
getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData
Returns the subband tree, for the specified tile-component.
getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the specified synthesis subband tree
getT() - Method in class loci.formats.gui.ImageViewer
Gets the T value of the currently displayed image.
getTabIdArray() - Method in class loci.poi.hssf.record.TabIdRecord
get the tab array.
getTable(String) - Method in class loci.common.IniList
Gets the table with the given name (header).
getTable() - Method in class loci.common.IniTable
 
getTable(int) - Method in interface mdbtools.dbengine.DataSource
 
getTable() - Method in class mdbtools.dbengine.sql.FQColumn
 
getTable(int) - Method in class mdbtools.dbengine.sql.Select
 
getTable(String) - Method in class ome.scifio.common.IniList
Gets the table with the given name (header).
getTableCount() - Method in interface loci.formats.services.MetakitService
 
getTableCount() - Method in class loci.formats.services.MetakitServiceImpl
 
getTableCount() - Method in interface mdbtools.dbengine.DataSource
 
getTableCount() - Method in class mdbtools.dbengine.sql.Select
 
getTableCount() - Method in class ome.metakit.MetakitReader
Retrieve the number of tables in this database file.
getTableData(String) - Method in interface loci.formats.services.MetakitService
 
getTableData(int) - Method in interface loci.formats.services.MetakitService
 
getTableData(String) - Method in class loci.formats.services.MetakitServiceImpl
 
getTableData(int) - Method in class loci.formats.services.MetakitServiceImpl
 
getTableData(int) - Method in class ome.metakit.MetakitReader
Retrieve all of the tabular data for the table with the given index.
getTableData(String) - Method in class ome.metakit.MetakitReader
Retrieve all of the tabular data for the named table.
getTableNames() - Method in interface loci.formats.services.MetakitService
 
getTableNames() - Method in class loci.formats.services.MetakitServiceImpl
 
getTableNames() - Method in class ome.metakit.MetakitReader
Retrieve the name of every table in this database file.
getTabpos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getTabWidthRatio() - Method in class loci.poi.hssf.record.WindowOneRecord
ratio of the width of the tabs to the horizontal scrollbar
getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Returns the TIFFTag which has tag number equal to tagNumber or null if no such tag exists in the TIFFTagSets associated with this directory.
getTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Retrieves the tag associated with this field.
getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
Returns the TIFFTag from this set that is associated with the given tag number, or null if no tag exists for that number.
getTag(String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
Returns the TIFFTag having the given tag name, or null if the named tag does not belong to this tag set.
getTag(int, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getTag(String, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getTag() - Method in class loci.formats.tiff.TiffIFDEntry
Retrieves the entry's Tag value.
getTag() - Method in class loci.poi.ddf.EscherBSERecord
unused
getTagAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getTagAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTagAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getTagAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTagAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTagAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTagAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTagAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTagAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTagAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTagAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getTagAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTagAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTagAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getTagAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getTagAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getTagAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTagAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTagAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getTagAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTagAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTagAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTagAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getTagAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTagAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTagAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTagAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getTagAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTagAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTagAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTagAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata
 
getTagAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTagAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTagNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
Retrieves an unmodifiable lexicographically increasing set of tag names.
getTagNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Retrieves the tag number in the range [0, 65535].
getTagNumbers() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
Retrieves an unmodifiable numerically increasing set of tag numbers.
getTagSet() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Returns the TIFFTagSet of which this tag is a part.
getTagSetList() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Returns the TIFFTagSets of which this directory is aware.
getTargetBitrate(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo
Returns the target bitrate of the optmimization point 'n'.
getTargetNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Return the target number of read bytes.
getTargetRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Return the target decoding rate in bits per pixel.
getTBegin(int) - Method in class loci.plugins.in.ImporterOptions
 
getTBegin(int) - Method in class loci.plugins.in.ImportProcess
 
getTCount(int) - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.SERIES.
getTemperature() - Method in class loci.formats.in.MetamorphHandler
 
getTemperature() - Method in class ome.xml.model.ImagingEnvironment
 
getTemperatures() - Method in class loci.formats.in.ND2Handler
 
getTemplate() - Method in class loci.poi.hpsf.SummaryInformation
Returns the template (or null).
getTEnd(int) - Method in class loci.plugins.in.ImporterOptions
 
getTEnd(int) - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getTermAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getTermAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTermAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getTermAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTermAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTermAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTermAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTermAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTermAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTermAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTermAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getTermAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTermAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTermAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getTermAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getTermAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getTermAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTermAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTermAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getTermAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTermAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTermAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTermAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getTermAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTermAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTermAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTermAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getTermAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTermAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTermAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTermAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata
 
getTermAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTermAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTerminateOnByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Gets terminateOnByte
getText() - Method in class loci.poi.hssf.extractor.ExcelExtractor
Retreives the text contents of the file
getText() - Method in class loci.poi.hssf.record.SeriesTextRecord
Get the text field for the SeriesText record.
getText() - Method in class loci.poi.POITextExtractor
Retrieves all the text from the document.
getText() - Method in class ome.xml.model.Shape
 
getTextFooter() - Static method in class loci.formats.tools.PrintFormatTable
 
getTextFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable
 
getTextHeader() - Static method in class loci.formats.tools.PrintFormatTable
 
getTextLength() - Method in class loci.poi.hssf.record.SeriesTextRecord
Get the text length field for the SeriesText record.
getTextLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Get the text length field for the TextObjectBase record.
getTextObjectRecord() - Method in class loci.poi.hssf.model.TextboxShape
 
getTextOrientation() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Get the text orientation field for the TextObjectBase record.
getTextRotation() - Method in class loci.poi.hssf.record.TextRecord
Get the text rotation field for the Text record.
getTextsLength() - Method in class loci.poi.hssf.record.NameRecord
gets the length of all texts
getTFrames(int) - Method in class loci.formats.in.LegacyND2Reader
 
getTheC() - Method in class ome.xml.model.Plane
 
getTheC() - Method in class ome.xml.model.Shape
 
getTheT() - Method in class ome.xml.model.Plane
 
getTheT() - Method in class ome.xml.model.Shape
 
getTheZ() - Method in class ome.xml.model.Plane
 
getTheZ() - Method in class ome.xml.model.Shape
 
getThreadConcurrency() - Static method in class jj2000.j2k.util.NativeServices
Returns the current concurrency level.
getThumbnail() - Method in class loci.poi.hpsf.SummaryInformation
Returns the thumbnail (or null) when this method is implemented.
getThumbnail() - Method in class loci.poi.hpsf.Thumbnail
Returns the thumbnail as a byte[] in VT_CF format.
getThumbnailAsWMF() - Method in class loci.poi.hpsf.Thumbnail
Returns the Thumbnail as a byte[] of WMF data if the Thumbnail's Clipboard Format Tag is CFTAG_WINDOWS and its Clipboard Format is CF_METAFILEPICT
getThumbnailIFDs() - Method in class loci.formats.in.MinimalTiffReader
Gets the list of IFDs associated with the current TIFF's thumbnails.
getThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser
Returns thumbnail IFDs.
getThumbSizeX() - Method in class loci.formats.FileStitcher
 
getThumbSizeX() - Method in class loci.formats.FormatReader
 
getThumbSizeX() - Method in interface loci.formats.IFormatReader
Get the size of the X dimension for the thumbnail.
getThumbSizeX() - Method in class loci.formats.ImageReader
 
getThumbSizeX() - Method in class loci.formats.in.LeicaSCNReader
 
getThumbSizeX() - Method in class loci.formats.in.MinimalTiffReader
 
getThumbSizeX() - Method in class loci.formats.ReaderWrapper
 
getThumbSizeX() - Method in class loci.tests.testng.Configuration
 
getThumbSizeY() - Method in class loci.formats.FileStitcher
 
getThumbSizeY() - Method in class loci.formats.FormatReader
 
getThumbSizeY() - Method in interface loci.formats.IFormatReader
Get the size of the Y dimension for the thumbnail.
getThumbSizeY() - Method in class loci.formats.ImageReader
 
getThumbSizeY() - Method in class loci.formats.in.LeicaSCNReader
 
getThumbSizeY() - Method in class loci.formats.in.MinimalTiffReader
 
getThumbSizeY() - Method in class loci.formats.ReaderWrapper
 
getThumbSizeY() - Method in class loci.tests.testng.Configuration
 
getTickColor() - Method in class loci.poi.hssf.record.TickRecord
Get the tick color field for the Tick record.
getTickMarkFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
Get the tick mark frequency field for the CategorySeriesAxis record.
getTIFFCompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
Returns the TIFFCompressor that is currently set to be used by the ImageWriter to encode each image strip or tile, or null if none has been set.
getTiffData(int) - Method in class ome.xml.model.Pixels
 
getTiffDataCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTiffDataCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getTiffDataCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTiffDataCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTiffDataFirstC(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTiffDataFirstC(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTiffDataFirstC(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTiffDataFirstC(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTiffDataFirstT(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTiffDataFirstT(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTiffDataFirstT(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTiffDataFirstT(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTiffDataFirstZ(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTiffDataFirstZ(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTiffDataFirstZ(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTiffDataFirstZ(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTiffDataIFD(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTiffDataIFD(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTiffDataIFD(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTiffDataIFD(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTiffDataPlaneCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTiffDataPlaneCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTiffDataPlaneCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTiffDataPlaneCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTIFFDecompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
Returns the TIFFDecompressor that is currently set to be used by the ImageReader to decode each image strip or tile, or null if none has been set.
getTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Retrieves a TIFF field from the directory.
getTIFFField(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
Retrieves all TIFF fields from the directory.
getTile(int, int) - Method in class com.sun.media.imageioimpl.common.SingleTileRenderedImage
Returns the image's Raster as tile (0, 0).
getTile(int, int, WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
 
getTile(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the coordinates of the current tile.
getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
 
getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTile(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the indexes of the current tile.
getTile(Point) - Method in interface jj2000.j2k.image.ImgData
Returns the indixes of the current tile.
getTile(Point) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the indexes of the current tile.
getTile(Point) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the coordinates of the current tile.
getTile(Point) - Method in class jj2000.j2k.image.input.ImgReader
Returns the coordinates of the current tile.
getTile(Point) - Method in class jj2000.j2k.image.Tiler
Returns the horizontal and vertical indexes of the current tile.
getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the indixes of the current tile.
getTile(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the indexes of the current tile.
getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the indexes of the current tile.
getTile(byte[], int, int, int, int) - Method in interface loci.formats.services.JPEGTurboService
 
getTile(int, int) - Method in interface loci.formats.services.JPEGTurboService
 
getTile(byte[], int, int, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl
 
getTile(int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl
 
getTile(IFD, byte[], int, int) - Method in class loci.formats.tiff.TiffParser
 
getTileAlternateMD5() - Method in class loci.tests.testng.Configuration
 
getTileCompHeight(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTileCompHeight(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the height in pixels of the specified tile-component for the given (tile-component) resolution level.
getTileCompHeight(int, int) - Method in interface jj2000.j2k.image.ImgData
Returns the height in pixels of the specified tile-component.
getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the height in pixels of the specified tile-component.
getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the height in pixels of the specified tile-component.
getTileCompHeight(int, int) - Method in class jj2000.j2k.image.input.ImgReader
Returns the height in pixels of the specified tile-component.
getTileCompHeight(int, int) - Method in class jj2000.j2k.image.Tiler
Returns the height in pixels of the specified tile-component.
getTileCompHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the height in pixels of the specified tile-component.
getTileCompHeight(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the height in pixels of the specified tile-component for the given resolution level.
getTileCompHeight(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the height in pixels of the specified tile-component for the given resolution level.
getTileCompVal(int, int) - Method in class jj2000.j2k.ModuleSpec
Gets value of specified tile-component.
getTileCompWidth(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTileCompWidth(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the width in pixels of the specified tile-component for the given (tile-component) resolution level.
getTileCompWidth(int, int) - Method in interface jj2000.j2k.image.ImgData
Returns the width in pixels of the specified tile-component
getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the width in pixels of the specified tile-component tile.
getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the width in pixels of the specified tile-component
getTileCompWidth(int, int) - Method in class jj2000.j2k.image.input.ImgReader
Returns the width in pixels of the specified tile-component.
getTileCompWidth(int, int) - Method in class jj2000.j2k.image.Tiler
Returns the width in pixels of the specified tile-component.
getTileCompWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the width in pixels of the specified tile-component
getTileCompWidth(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the width in pixels of the specified tile-component for the given resolution level.
getTileCompWidth(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the width in pixels of the specified tile-component for the given resolution level.
getTileDef(int) - Method in class jj2000.j2k.ModuleSpec
Gets default value of the specified tile.
getTileGridXOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the X coordinate of the upper-left pixel of tile (0, 0).
getTileGridXOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTileGridYOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the Y coordinate of the upper-left pixel of tile (0, 0).
getTileGridYOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTileHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the height of a tile.
getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the overall height of the current tile in pixels.
getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTileHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the overall height of the current tile in pixels, for the given resolution level.
getTileHeight() - Method in interface jj2000.j2k.image.ImgData
Returns the overall height of the current tile in pixels.
getTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the overall height of the current tile in pixels.
getTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the overall height of the current tile in pixels.
getTileHeight() - Method in class jj2000.j2k.image.input.ImgReader
Returns the overall height of the current tile in pixels, assuming there is no-tiling.
getTileHeight() - Method in class jj2000.j2k.image.Tiler
Returns the overall height of the current tile in pixels.
getTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the overall height of the current tile in pixels.
getTileHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the overall height of the current tile in pixels, for the given resolution level.
getTileHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the overall height of the current tile in pixels, for the given resolution level.
getTileIdx() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the index of the current tile, relative to a standard scan-line order.
getTileIdx() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the index of the current tile, relative to a standard scan-line order.
getTileIdx() - Method in interface jj2000.j2k.image.ImgData
Returns the index of the current tile, relative to a standard scan-line order.
getTileIdx() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the index of the current tile, relative to a standard scan-line order.
getTileIdx() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the index of the current tile, relative to a standard scan-line order.
getTileIdx() - Method in class jj2000.j2k.image.input.ImgReader
Returns the index of the current tile, relative to a standard scan-line order.
getTileIdx() - Method in class jj2000.j2k.image.Tiler
Returns the index of the current tile, relative to a standard scan-line order.
getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the index of the current tile, relative to a standard scan-line order.
getTileIdx() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the index of the current tile, relative to a standard scan-line order.
getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the index of the current tile, relative to a standard scan-line order.
getTileLength() - Method in class loci.formats.tiff.IFD
Returns the length of an image tile.
getTileMD5() - Method in class loci.tests.testng.Configuration
 
getTileOff(Point, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the horizontal and vertical offset of the upper-left corner of the current tile, in the specified component, relative to the canvas origin, in the component coordinates (not in the reference grid coordinates).
getTilePartULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTilePartULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the horizontal offset of tile partition
getTilePartULX() - Method in interface jj2000.j2k.image.ImgData
Returns the horizontal tile partition offset in the reference grid
getTilePartULX() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the horizontal tile partition offset in the reference grid
getTilePartULX() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the horizontal tile partition offset in the reference grid
getTilePartULX() - Method in class jj2000.j2k.image.input.ImgReader
Returns the horizontal tile partition offset in the reference grid
getTilePartULX() - Method in class jj2000.j2k.image.Tiler
Returns the horizontal tile partition offset in the reference grid
getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the horizontal tile partition offset in the reference grid
getTilePartULX() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the horizontal tile partition offset in the reference grid
getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the horizontal tile partition offset in the reference grid
getTilePartULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTilePartULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the vertical offset of tile partition
getTilePartULY() - Method in interface jj2000.j2k.image.ImgData
Returns the vertical tile partition offset in the reference grid
getTilePartULY() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the vertical tile offset in the reference grid
getTilePartULY() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the vertical tile partition offset in the reference grid
getTilePartULY() - Method in class jj2000.j2k.image.input.ImgReader
Returns the vertical tile partition offset in the reference grid
getTilePartULY() - Method in class jj2000.j2k.image.Tiler
Returns the vertical tile partition offset in the reference grid
getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the vertical tile partition offset in the reference grid
getTilePartULY() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the vertical tile partition offset in the reference grid
getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the vertical tile partition offset in the reference grid
getTileSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
getTilesPerColumn() - Method in class loci.formats.tiff.IFD
Returns the number of image tiles per column.
getTilesPerRow() - Method in class loci.formats.tiff.IFD
Returns the number of image tiles per row.
getTileWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the width of a tile.
getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns the width of the current tile in pixels.
getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTileWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Returns the overall width of the current tile in pixels for the given (tile) resolution level.
getTileWidth() - Method in interface jj2000.j2k.image.ImgData
Returns the overall width of the current tile in pixels.
getTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter
Returns the overall width of the current tile in pixels.
getTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner
Returns the overall width of the current tile in pixels.
getTileWidth() - Method in class jj2000.j2k.image.input.ImgReader
Returns the width of the current tile in pixels, assuming there is no-tiling.
getTileWidth() - Method in class jj2000.j2k.image.Tiler
Returns the overall width of the current tile in pixels.
getTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Returns the overall width of the current tile in pixels.
getTileWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
Returns the overall width of the current tile in pixels for the given resolution level.
getTileWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
Returns the overall width of the current tile in pixels, for the given resolution level.
getTileWidth() - Method in class loci.formats.tiff.IFD
Returns the width of an image tile.
getTilingOrigin(Point) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns the tiling origin, referred to as '(Px,Py)' in the 'ImgData' interface.
getTilingOrigin(Point) - Method in class jj2000.j2k.image.Tiler
Returns the tiling origin, referred to as '(xt0siz,yt0siz)' in the codestream header (SIZ marker segment).
getTime(String, String) - Static method in class loci.common.DateTools
Converts a string date in the given format to a long timestamp (in Unix format: milliseconds since January 1, 1970).
getTime(String, String) - Static method in class ome.scifio.common.DateTools
Converts a string date in the given format to a long timestamp (in Unix format: milliseconds since January 1, 1970).
getTimeBinCount() - Method in class loci.formats.in.SDTReader
Gets the number of bins in the lifetime histogram.
getTimeIncrement() - Method in class loci.tests.testng.Configuration
 
getTimeIncrement() - Method in class ome.xml.model.Pixels
 
getTimepoint() - Method in class ome.xml.model.WellSample
 
getTimepoints() - Method in class loci.formats.in.ND2Handler
 
getTimestamp() - Static method in class loci.common.DateTools
Returns a timestamp for the current timezone in a human-readable locale-independent format ("YYYY-MM-DD HH:MM:SS")
getTimestamp() - Static method in class ome.scifio.common.DateTools
Returns a timestamp for the current timezone in a human-readable locale-independent format ("YYYY-MM-DD HH:MM:SS")
getTimestampAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getTimestampAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTimestampAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getTimestampAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTimestampAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTimestampAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTimestampAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTimestampAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTimestampAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTimestampAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTimestampAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getTimestampAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTimestampAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTimestampAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getTimestampAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getTimestampAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getTimestampAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTimestampAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTimestampAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getTimestampAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTimestampAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTimestampAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTimestampAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getTimestampAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTimestampAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTimestampAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTimestampAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getTimestampAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTimestampAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTimestampAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata
 
getTimestampAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata
 
getTimestampAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTimestampAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTimestamps() - Method in class loci.formats.in.MetamorphHandler
 
getTitle() - Method in class loci.poi.hpsf.SummaryInformation
Returns the title (or null).
getToCell() - Method in class loci.poi.hssf.util.RangeAddress
 
getTopBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the color to use for the top border
getTopBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the palette index for the top border
getTopColGutter() - Method in class loci.poi.hssf.record.GutsRecord
get the size of the gutter that appears at the above the columns
getTopRow() - Method in class loci.poi.hssf.model.Sheet
 
getTopRow() - Method in class loci.poi.hssf.record.PaneRecord
Get the top row field for the Pane record.
getTopRow() - Method in class loci.poi.hssf.record.WindowTwoRecord
get the top row visible in the window
getTopRow() - Method in class loci.poi.hssf.usermodel.HSSFSheet
The top row in the visible view when the sheet is first viewed after opening it in a viewer
getTotBitrate() - Method in class jj2000.j2k.entropy.encoder.LayersInfo
Returns the overall target bitrate for the entire bit stream.
getTotNumLayers() - Method in class jj2000.j2k.entropy.encoder.LayersInfo
Returns the total number of layers, according to the layer specification of this object and the overall target bitrate.
getTransform() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getTransform() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getTransform() - Method in class ome.xml.model.Shape
 
getTransmittance() - Method in class ome.xml.model.TransmittanceRange
 
getTransmittanceRange() - Method in class ome.xml.model.Filter
 
getTransmittanceRangeCutIn(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTransmittanceRangeCutIn(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTransmittanceRangeCutIn(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTransmittanceRangeCutIn(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTransmittanceRangeCutInTolerance(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTransmittanceRangeCutInTolerance(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTransmittanceRangeCutInTolerance(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTransmittanceRangeCutInTolerance(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTransmittanceRangeCutOut(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTransmittanceRangeCutOut(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTransmittanceRangeCutOut(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTransmittanceRangeCutOut(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTransmittanceRangeCutOutTolerance(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTransmittanceRangeCutOutTolerance(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTransmittanceRangeCutOutTolerance(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTransmittanceRangeCutOutTolerance(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTransmittanceRangeTransmittance(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getTransmittanceRangeTransmittance(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getTransmittanceRangeTransmittance(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getTransmittanceRangeTransmittance(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class loci.formats.gui.XMLCellRenderer
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.AQUA
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLACK
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BROWN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.CORAL
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GOLD
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIME
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.MAROON
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PINK
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PLUM
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.RED
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ROSE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TAN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TEAL
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.WHITE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW
 
getTripletHash() - Static method in class loci.poi.hssf.util.HSSFColor
this function returns all colors in a hastable.
getTStep(int) - Method in class loci.plugins.in.ImporterOptions
 
getTStep(int) - Method in class loci.plugins.in.ImportProcess
 
getTuneable() - Method in class ome.xml.model.Laser
 
getType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns the type of the data stored in the field.
getType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Returns the box type.
getType() - Method in class loci.formats.cache.CacheEvent
Gets the type of cache update.
getType() - Method in class loci.formats.gui.TwoChannelColorSpace
 
getType() - Method in class loci.formats.in.PrairieMetadata.Sequence
Gets the type associated with this Sequence.
getType() - Method in class loci.formats.tiff.TiffIFDEntry
Retrieves the entry's Type value.
getType() - Method in class loci.poi.ddf.EscherPropertyMetaData
 
getType() - Method in class loci.poi.hpsf.Property
Returns the property's type.
getType() - Method in class loci.poi.hssf.record.BOFRecord
type of object this marks
getType() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getType() - Method in class loci.poi.hssf.record.formula.AddPtg
 
getType() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getType() - Method in class loci.poi.hssf.record.formula.ConcatPtg
 
getType() - Method in class loci.poi.hssf.record.formula.DividePtg
 
getType() - Method in class loci.poi.hssf.record.formula.EqualPtg
 
getType() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
 
getType() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg
Get the type of PTG for Greater Than
getType() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
 
getType() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
 
getType() - Method in class loci.poi.hssf.record.formula.LessThanPtg
Get the type of PTG for Less Than
getType() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
 
getType() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
 
getType() - Method in class loci.poi.hssf.record.formula.OperationPtg
 
getType() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
 
getType() - Method in class loci.poi.hssf.record.formula.PercentPtg
 
getType() - Method in class loci.poi.hssf.record.formula.PowerPtg
 
getType() - Method in class loci.poi.hssf.record.formula.RangePtg
 
getType() - Method in class loci.poi.hssf.record.formula.SubtractPtg
 
getType() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
 
getType() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
 
getType() - Method in class loci.poi.hssf.record.formula.UnionPtg
 
getType() - Method in class loci.poi.hssf.record.LegendRecord
Get the type field for the Legend record.
getType() - Method in class loci.poi.hssf.record.StyleRecord
get the type of the style (builtin or user-defined)
getType() - Method in class mdbtools.dbengine.sql.Join
 
getType() - Method in class ome.metakit.Column
Retrieve the Class corresponding to the column's type.
getType() - Method in class ome.xml.model.Arc
 
getType() - Method in class ome.xml.model.Detector
 
getType() - Method in class ome.xml.model.Experiment
 
getType() - Method in class ome.xml.model.Filament
 
getType() - Method in class ome.xml.model.Filter
 
getType() - Method in class ome.xml.model.Laser
 
getType() - Method in class ome.xml.model.MicrobeamManipulation
 
getType() - Method in class ome.xml.model.Microscope
 
getType() - Method in class ome.xml.model.Pixels
 
getType() - Method in class ome.xml.model.Screen
 
getType() - Method in class ome.xml.model.Well
 
getTypeByName(String) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns the data type constant corresponding to the supplied data type name.
getTypeByName(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Returns the type String based on the provided name.
getTypeInt(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Converts the box type from integer to string.
getTypeName(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns the name of the supplied data type constant.
getTypeOffset() - Method in class loci.poi.hssf.usermodel.HSSFFont
get normal,super or subscript.
getTypes() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
Returns the channel types.
getTypeString(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Converts the box type from integer to string.
getTypeString() - Method in class ome.metakit.Column
Retrieve a string representation of the type.
getUID() - Method in class loci.poi.ddf.EscherBitmapBlip
 
getUid() - Method in class loci.poi.ddf.EscherBSERecord
16 byte MD4 checksum.
getUID() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getUID() - Method in class loci.poi.ddf.EscherPictBlip
 
getUInt(byte[], int) - Static method in class loci.poi.util.LittleEndian
get an unsigned int value from a byte array
getUInt(byte[]) - Static method in class loci.poi.util.LittleEndian
get an unsigned int value from a byte array
getULong(byte[], int) - Static method in class loci.poi.util.LittleEndian
Gets an unsigned int value (8 bytes) from a byte array.
getUncompressedSize() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getUncompressedSize() - Method in class loci.poi.ddf.EscherPictBlip
 
getUnderline() - Method in class loci.poi.hssf.record.FontRecord
get the type of underlining for the font
getUnderline() - Method in class loci.poi.hssf.usermodel.HSSFFont
get type of text underlining to use
getUnderlyingReaders() - Method in class loci.formats.FileStitcher
 
getUnderlyingReaders() - Method in class loci.formats.FormatReader
 
getUnderlyingReaders() - Method in interface loci.formats.IFormatReader
Retrieves all underlying readers.
getUnderlyingReaders() - Method in class loci.formats.ImageReader
 
getUnderlyingReaders() - Method in class loci.formats.ReaderWrapper
 
getUndocumented() - Method in class loci.poi.hssf.record.SeriesTextRecord
Get the undocumented field for the SeriesText record.
getUngroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getUnicodeFlag() - Method in class loci.poi.hssf.record.FormatRecord
get whether the string is unicode
getUnion() - Method in class ome.xml.model.ROI
 
getUnion() - Method in class ome.xml.model.Shape
 
getUnits() - Method in class loci.poi.hssf.record.UnitsRecord
Get the units field for the Units record.
getUniverse() - Method in class loci.formats.gui.LegacyQTTools
Gets QuickTime for Java reflected universe.
getUnknown() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getUnknownColorspace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Returns the UnknowColorspace flag.
getUnpackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Returns the binary data unpacked into an array of bytes.
getUnsignedByte(byte[], int) - Static method in class loci.poi.util.LittleEndian
get the unsigned value of a byte.
getUnsignedByte(byte[]) - Static method in class loci.poi.util.LittleEndian
get the unsigned value of a byte.
getUnused() - Method in class loci.poi.hssf.record.NameRecord
gets the index to extern sheet
getUnused2() - Method in class loci.poi.ddf.EscherBSERecord
 
getUnused3() - Method in class loci.poi.ddf.EscherBSERecord
 
getUpgradeCheckInfo() - Method in class loci.plugins.in.ImporterOptions
 
getURL() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
Returns the URL data element.
getUsage() - Method in class loci.poi.ddf.EscherBSERecord
Defines the way this blip is used.
getUsedFile(Double, String[]) - Method in class loci.plugins.macro.LociFunctions
 
getUsedFileCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getUsedFiles() - Method in class loci.formats.FileStitcher
 
getUsedFiles(boolean) - Method in class loci.formats.FileStitcher
 
getUsedFiles() - Method in class loci.formats.FormatReader
 
getUsedFiles(boolean) - Method in class loci.formats.FormatReader
 
getUsedFiles() - Method in interface loci.formats.IFormatReader
Returns an array of filenames needed to open this dataset.
getUsedFiles(boolean) - Method in interface loci.formats.IFormatReader
Returns an array of filenames needed to open this dataset.
getUsedFiles() - Method in class loci.formats.ImageReader
 
getUsedFiles(boolean) - Method in class loci.formats.ImageReader
 
getUsedFiles(boolean) - Method in class loci.formats.in.InveonReader
 
getUsedFiles(boolean) - Method in class loci.formats.in.MetamorphTiffReader
 
getUsedFiles(boolean) - Method in class loci.formats.in.UnisokuReader
 
getUsedFiles() - Method in class loci.formats.ReaderWrapper
 
getUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
 
getUsedMemory() - Static method in class loci.tests.testng.TestTools
Gets the quantity of used memory, in MB.
getUsePage() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getUsePage() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the use page numbers.
getUsername() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getUsername() - Method in class loci.poi.hssf.record.WriteAccessRecord
get the username for the user that created the report.
getUserName() - Method in class ome.xml.model.Experimenter
 
getUsernameLength() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getUShort(byte[], int) - Static method in class loci.poi.util.LittleEndian
get an unsigned short value from a byte array
getUShort(byte[]) - Static method in class loci.poi.util.LittleEndian
get an unsigned short value from the beginning of a byte array
getUUID() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
Returns the UUID of this box.
getUUID() - Method in class loci.formats.meta.AggregateMetadata
Gets the UUID associated with this collection of metadata.
getUUID() - Method in class loci.formats.meta.DummyMetadata
Gets the UUID associated with this collection of metadata.
getUUID() - Method in interface loci.formats.meta.MetadataRetrieve
Gets the UUID associated with this collection of metadata.
getUUID() - Method in class loci.formats.ome.OMEXMLMetadataImpl
Gets the UUID associated with this collection of metadata.
getUUID() - Method in class ome.xml.model.BinaryOnly
 
getUUID() - Method in class ome.xml.model.OME
 
getUUID() - Method in class ome.xml.model.TiffData
 
getUUIDFileName(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getUUIDFileName(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getUUIDFileName(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getUUIDFileName(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getUUIDValue(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getUUIDValue(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getUUIDValue(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getUUIDValue(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getValidSettings() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getValidSettings() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the valid settings.
getValue(int, int) - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder
Returns the current value of the specified element in the tag tree.
getValue() - Method in class loci.formats.in.BaseZeissReader.Tag
 
getValue(String) - Method in class loci.formats.in.PrairieMetadata.Frame
Gets the value of the given Key, beneath this Frame.
getValue() - Method in class loci.plugins.prefs.BooleanOption
Gets the current value of the option.
getValue() - Method in class loci.plugins.prefs.DoubleOption
Gets the current value of the option.
getValue(String) - Method in class loci.plugins.prefs.OptionsList
Gets the value of the string option with the given key.
getValue() - Method in class loci.plugins.prefs.StringOption
Gets the current value of the option.
getValue() - Method in class loci.poi.hpsf.Property
Returns the property's value.
getValue() - Method in exception loci.poi.hpsf.VariantTypeException
Returns the value who's variant type caused the problem.
getValue() - Method in class loci.poi.hssf.record.formula.BoolPtg
 
getValue() - Method in class loci.poi.hssf.record.formula.IntPtg
 
getValue() - Method in class loci.poi.hssf.record.formula.NumberPtg
 
getValue() - Method in class loci.poi.hssf.record.formula.StringPtg
 
getValue() - Method in class loci.poi.hssf.record.FormulaRecord
get the calculated value of the formula
getValue() - Method in class loci.poi.hssf.record.LabelRecord
get the value
getValue() - Method in class loci.poi.hssf.record.NumberRecord
get the value for the cell
getValue(int) - Method in class loci.poi.util.BitField
Obtain the value for the specified BitField, appropriately shifted right.
getValue() - Method in class ome.xml.model.BooleanAnnotation
 
getValue() - Method in class ome.xml.model.CommentAnnotation
 
getValue() - Method in class ome.xml.model.DoubleAnnotation
 
getValue() - Method in enum ome.xml.model.enums.AcquisitionMode
 
getValue() - Method in enum ome.xml.model.enums.ArcType
 
getValue() - Method in enum ome.xml.model.enums.Binning
 
getValue() - Method in enum ome.xml.model.enums.Compression
 
getValue() - Method in enum ome.xml.model.enums.ContrastMethod
 
getValue() - Method in enum ome.xml.model.enums.Correction
 
getValue() - Method in enum ome.xml.model.enums.DetectorType
 
getValue() - Method in enum ome.xml.model.enums.DimensionOrder
 
getValue() - Method in enum ome.xml.model.enums.ExperimentType
 
getValue() - Method in enum ome.xml.model.enums.FilamentType
 
getValue() - Method in enum ome.xml.model.enums.FillRule
 
getValue() - Method in enum ome.xml.model.enums.FilterType
 
getValue() - Method in enum ome.xml.model.enums.FontFamily
 
getValue() - Method in enum ome.xml.model.enums.FontStyle
 
getValue() - Method in enum ome.xml.model.enums.IlluminationType
 
getValue() - Method in enum ome.xml.model.enums.Immersion
 
getValue() - Method in enum ome.xml.model.enums.LaserMedium
 
getValue() - Method in enum ome.xml.model.enums.LaserType
 
getValue() - Method in enum ome.xml.model.enums.LineCap
 
getValue() - Method in enum ome.xml.model.enums.Marker
 
getValue() - Method in enum ome.xml.model.enums.Medium
 
getValue() - Method in enum ome.xml.model.enums.MicrobeamManipulationType
 
getValue() - Method in enum ome.xml.model.enums.MicroscopeType
 
getValue() - Method in enum ome.xml.model.enums.NamingConvention
 
getValue() - Method in enum ome.xml.model.enums.PixelType
 
getValue() - Method in enum ome.xml.model.enums.Pulse
 
getValue() - Method in class ome.xml.model.LongAnnotation
 
getValue() - Method in class ome.xml.model.primitives.PrimitiveType
Retrieves the concrete delegate value.
getValue() - Method in class ome.xml.model.TagAnnotation
 
getValue() - Method in class ome.xml.model.TermAnnotation
 
getValue() - Method in class ome.xml.model.TimestampAnnotation
 
getValue() - Method in class ome.xml.model.UUID
 
getValue() - Method in class ome.xml.model.XMLAnnotation
 
getValueAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Returns a String containing a human-readable version of the data item.
getValueCount() - Method in class loci.formats.tiff.TiffIFDEntry
Retrieves the entry's ValueCount value.
getValueForKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation
Return just the value (i.e.
getValueList() - Method in class ome.metakit.ColumnMap
Return the list of values in this map's column.
getValueName(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Returns the mnemonic name associated with a particular value that this tag's data may take on, or null if no name is present.
getValueOffset() - Method in class loci.formats.tiff.TiffIFDEntry
Retrieves the entry's ValueOffset value.
getValues() - Method in class loci.formats.in.PrairieMetadata.Frame
Gets a read-only map of Frame key/value pairs.
getValues() - Method in class ome.metakit.ColumnMap
Return an array of the values in this map's column.
getValuesDataType() - Method in class loci.poi.hssf.record.SeriesRecord
Get the values data type field for the Series record.
getVar(String) - Method in class loci.common.ReflectedUniverse
Returns the value of a variable or field in the universe.
getVar(String) - Method in class ome.scifio.common.ReflectedUniverse
Returns the value of a variable or field in the universe.
getVariableAttributes(String) - Method in interface loci.formats.services.NetCDFService
Retrieves all of a variable's attributes.
getVariableAttributes(String) - Method in class loci.formats.services.NetCDFServiceImpl
 
getVariableList() - Method in interface loci.formats.services.NetCDFService
Retrieves an exhaustive list of the HDF paths for all variables in the HDF document.
getVariableList() - Method in class loci.formats.services.NetCDFServiceImpl
 
getVariableValue(String) - Method in interface loci.formats.services.NetCDFService
Retrieves a variable's value.
getVariableValue(String) - Method in class loci.formats.services.NetCDFServiceImpl
 
getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getVariantLength(long) - Static method in class loci.poi.hpsf.Variant
Returns a variant type's length.
getVariantName(long) - Static method in class loci.poi.hpsf.Variant
Returns the variant type name associated with a variant type number.
getVariantType() - Method in exception loci.poi.hpsf.VariantTypeException
Returns the offending variant type.
getVaryDisplayPattern() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getVCenter() - Method in class loci.poi.hssf.record.VCenterRecord
get whether to center vertically or not
getVendor() - Static method in class com.sun.media.imageioimpl.common.PackageUtil
Return a vendor string for the package.
getVersion() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
Deprecated. 
getVersion() - Static method in class com.sun.media.imageioimpl.common.PackageUtil
Return a version string for the package.
getVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
Returns the Version data element.
getVersion() - Method in class loci.poi.hssf.record.BOFRecord
Version number - for BIFF8 should be 0x06
getVersionNumber(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getVertAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT
Returns the vertical analysis wavelet filters used in each level, for the specified tile-component.
getVertAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the vertical analysis wavelet filters used in each level, for the specified component and tile.
getVerticalAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get the vertical alignment of text in the cell
getVerticalAlignment() - Method in class loci.poi.hssf.record.TextRecord
Get the vertical alignment field for the Text record.
getVerticalAlignment() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get the type of vertical alignment for the cell
getVerticalHold() - Method in class loci.poi.hssf.record.WindowOneRecord
get the vertical position of the window (in 1/20ths of a point)
getVerticallyCenter(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Determine whether printed output for this sheet will be vertically centered.
getVerticalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
Return the vertical resolution.
getVerticalScale() - Method in class loci.poi.hssf.record.PlotGrowthRecord
Get the verticalScale field for the PlotGrowth record.
getVerticalSplitLeftColumn() - Method in class loci.poi.hssf.util.PaneInformation
For a vertical split returns the left column in the RIGHT pane.
getVerticalSplitPosition() - Method in class loci.poi.hssf.util.PaneInformation
Returns the vertical position of the split.
getVerticalTextAlignment() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getVerWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
This function returns the vertical wavelet filter relevant to this subband
getVerWFilter() - Method in class jj2000.j2k.wavelet.Subband
This function returns the vertical wavelet filter relevant to this subband
getVerWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
This function returns the vertical wavelet filter relevant to this subband
getVFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
Returns the vertical analysis filters to be used in component 'n' and tile 't'.
getVFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
Returns the vertical analysis filters to be used in component 'n' and tile 't'.
getViewableArray() - Method in interface loci.poi.poifs.dev.POIFSViewable
Get an array of objects, some of which may implement POIFSViewable
getViewableArray() - Method in class loci.poi.poifs.filesystem.DirectoryNode
Get an array of objects, some of which may implement POIFSViewable
getViewableArray() - Method in class loci.poi.poifs.filesystem.DocumentNode
Get an array of objects, some of which may implement POIFSViewable
getViewableArray() - Method in class loci.poi.poifs.filesystem.POIFSDocument
Get an array of objects, some of which may implement POIFSViewable
getViewableArray() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
Get an array of objects, some of which may implement POIFSViewable
getViewableArray() - Method in class loci.poi.poifs.property.Property
Get an array of objects, some of which may implement POIFSViewable
getViewableIterator() - Method in interface loci.poi.poifs.dev.POIFSViewable
Get an Iterator of objects, some of which may implement POIFSViewable
getViewableIterator() - Method in class loci.poi.poifs.filesystem.DirectoryNode
Get an Iterator of objects, some of which may implement POIFSViewable
getViewableIterator() - Method in class loci.poi.poifs.filesystem.DocumentNode
Get an Iterator of objects, some of which may implement POIFSViewable
getViewableIterator() - Method in class loci.poi.poifs.filesystem.POIFSDocument
Get an Iterator of objects, some of which may implement POIFSViewable
getViewableIterator() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
Get an Iterator of objects, some of which may implement POIFSViewable
getViewableIterator() - Method in class loci.poi.poifs.property.Property
Get an Iterator of objects, some of which may implement POIFSViewable
getVirtualInfo() - Method in class loci.plugins.in.ImporterOptions
 
getVirtualReader() - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getVisible() - Method in class ome.xml.model.Shape
 
getVoltage() - Method in class loci.formats.in.ND2Handler
 
getVoltage() - Method in class ome.xml.model.Detector
 
getVoltage() - Method in class ome.xml.model.DetectorSettings
 
getVoxSzX() - Method in interface loci.formats.services.WlzService
Gets voxel width.
getVoxSzX() - Method in class loci.formats.services.WlzServiceImpl
 
getVoxSzY() - Method in interface loci.formats.services.WlzService
Gets voxel height.
getVoxSzY() - Method in class loci.formats.services.WlzServiceImpl
 
getVoxSzZ() - Method in interface loci.formats.services.WlzService
Gets voxel depth.
getVoxSzZ() - Method in class loci.formats.services.WlzServiceImpl
 
getVResolution() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getVResolution() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup
Returns the vertical resolution.
getWaitTime() - Method in class loci.formats.in.PrairieMetadata
Gets the waitTime recorded in the configuration.
getWavelength(Integer) - Static method in class loci.formats.FormatTools
 
getWavelength(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getWavelength() - Method in class ome.xml.model.Laser
 
getWavelength() - Method in class ome.xml.model.LightSourceSettings
 
getWavelengths() - Method in class loci.formats.in.MetamorphHandler
 
getWeight() - Method in class loci.poi.hssf.record.LineFormatRecord
Get the weight field for the LineFormat record.
getWell(int) - Method in class ome.xml.model.Plate
 
getWell() - Method in class ome.xml.model.WellSample
 
getWellAnnotationRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellAnnotationRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellAnnotationRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellAnnotationRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellAnnotationRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellAnnotationRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellAnnotationRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellAnnotationRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellColor(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellColor(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellColor(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellColor(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellColumn(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellColumn(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellColumn(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellColumn(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getWellCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellExternalDescription(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellExternalDescription(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellExternalDescription(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellExternalDescription(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellExternalIdentifier(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellExternalIdentifier(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellExternalIdentifier(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellExternalIdentifier(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellID(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellID(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellID(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellID(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellOriginX() - Method in class ome.xml.model.Plate
 
getWellOriginY() - Method in class ome.xml.model.Plate
 
getWellReagentRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellReagentRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellReagentRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellReagentRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellRow(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellRow(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellRow(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellRow(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSample(int) - Method in class ome.xml.model.Well
 
getWellSampleAnnotationRef(int, int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSampleAnnotationRef(int, int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSampleAnnotationRef(int, int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSampleAnnotationRef(int, int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSampleAnnotationRefCount(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSampleAnnotationRefCount(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSampleAnnotationRefCount(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSampleAnnotationRefCount(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSampleCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSampleCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSampleCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSampleCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSampleID(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSampleID(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSampleID(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSampleID(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSampleImageRef(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSampleImageRef(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSampleImageRef(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSampleImageRef(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSampleIndex(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSampleIndex(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSampleIndex(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSampleIndex(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSamplePositionX(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSamplePositionX(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSamplePositionX(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSamplePositionX(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSamplePositionY(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSamplePositionY(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSamplePositionY(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSamplePositionY(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSampleRefCount(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSampleRefCount(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSampleRefCount(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSampleRefCount(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellSampleTimepoint(int, int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellSampleTimepoint(int, int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellSampleTimepoint(int, int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellSampleTimepoint(int, int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWellType(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getWellType(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getWellType(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getWellType(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getWhere() - Method in class mdbtools.dbengine.sql.Select
 
getWidgets() - Method in class loci.plugins.config.FlexWidgets
 
getWidgets() - Method in interface loci.plugins.config.IFormatWidgets
 
getWidgets() - Method in class loci.plugins.config.ND2Widgets
 
getWidgets() - Method in class loci.plugins.config.PictWidgets
 
getWidgets() - Method in class loci.plugins.config.QTWidgets
 
getWidgets() - Method in class loci.plugins.config.SDTWidgets
 
getWidgets() - Method in class loci.plugins.config.TiffDelegateWidgets
 
getWidth() - Method in class com.luratech.lwf.lwfDecoder
 
getWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
Returns the width of the image.
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Returns the width of the image.
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getWidth() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getWidth() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder
Returns the number of leafs along the horizontal direction.
getWidth() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
Returns the number of leafs along the horizontal direction.
getWidth() - Method in class loci.formats.codec.JPEGTileDecoder
 
getWidth(int) - Method in class loci.formats.in.LegacyND2Reader
 
getWidth() - Method in interface loci.formats.services.LuraWaveService
getWidth() - Method in class loci.formats.services.LuraWaveServiceImpl
 
getWidth(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack
 
getWidth() - Method in class loci.plugins.util.BFVirtualStack
 
getWidth() - Method in class loci.plugins.util.RecordedImageProcessor
 
getWidth() - Method in class loci.poi.ddf.EscherBlipWMFRecord
Retrieve the width of the metafile in EMU's (English Metric Units).
getWidth() - Method in class loci.poi.hssf.record.AxisParentRecord
Get the width field for the AxisParent record.
getWidth() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getWidth() - Method in class loci.poi.hssf.record.ChartRecord
Get the width field for the Chart record.
getWidth() - Method in class loci.poi.hssf.record.TextRecord
Get the width field for the Text record.
getWidth() - Method in class loci.poi.hssf.record.WindowOneRecord
get the width of the window
getWidth() - Method in class loci.poi.hssf.util.RangeAddress
 
getWidth() - Method in class ome.xml.model.Mask
 
getWidth() - Method in class ome.xml.model.Rectangle
 
getWindowing() - Method in class loci.poi.hssf.record.DateWindow1904Record
gets whether or not to use 1904 date windowing (which means you'll be screwed in 2004)
getWindowlessInfo() - Method in class loci.plugins.in.ImporterOptions
 
getWindowOne() - Method in class loci.poi.hssf.model.Workbook
 
getWlzOrgLabelName() - Method in interface loci.formats.services.WlzService
Gets the text string used for the Woolz origin label.
getWlzOrgLabelName() - Method in class loci.formats.services.WlzServiceImpl
 
getWordCount() - Method in class loci.poi.hpsf.SummaryInformation
Returns the word count or 0 if the SummaryInformation does not contain a word count.
getWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
 
getWorkingDistance() - Method in class ome.xml.model.Objective
 
getWrappedStream() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
 
getWrapText() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether to wrap the text in the cell
getWrapText() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
get whether the text should be wrapped
getWriteAccess() - Method in class loci.poi.hssf.model.Workbook
 
getWriteCodeStreamOnly() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Gets writeCodeStreamOnly.
getWriteProtect() - Method in class loci.poi.hssf.model.Workbook
 
getWriter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
Returns the current ImageWriter.
getWriter(String) - Method in class loci.formats.ImageWriter
Gets the writer used to save the given file.
getWriter() - Method in class loci.formats.ImageWriter
Gets the writer used to save the current file.
getWriter(Class<? extends IFormatWriter>) - Method in class loci.formats.ImageWriter
Gets the file format writer instance matching the given class.
getWriter() - Method in class loci.formats.WriterWrapper
Gets the wrapped writer.
getWriterList() - Method in class loci.tests.testng.FormatWriterTest
 
getWriters() - Method in class loci.formats.ImageWriter
Gets all constituent file format writers.
getWSBool1() - Method in class loci.poi.hssf.record.WSBoolRecord
get first byte (see bit getters)
getWSBool2() - Method in class loci.poi.hssf.record.WSBoolRecord
get the second byte (see bit getters)
getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
Returns the data type used by the filters in this object, as defined in the 'DataBlk' interface for specified tile-component.
getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
Returns the data type used by the filters in this object, as defined in the 'DataBlk' interface for specified tile-component.
getWTDataType() - Method in class jj2000.j2k.wavelet.WTFilterSpec
Returns the data type used by the filters in this object, as defined in the 'DataBlk' interface.
getX() - Method in class loci.poi.hssf.record.AxisParentRecord
Get the x field for the AxisParent record.
getX() - Method in class loci.poi.hssf.record.ChartRecord
Get the x field for the Chart record.
getX() - Method in class loci.poi.hssf.record.PaneRecord
Get the x field for the Pane record.
getX() - Method in class loci.poi.hssf.record.TextRecord
Get the x field for the Text record.
getX() - Method in class ome.xml.model.Ellipse
 
getX() - Method in class ome.xml.model.Label
 
getX() - Method in class ome.xml.model.Mask
 
getX() - Method in class ome.xml.model.Point
 
getX() - Method in class ome.xml.model.Rectangle
 
getX() - Method in class ome.xml.model.StageLabel
 
getX1() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
The top left x coordinate of this group.
getX1() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
The top left x coordinate of this group.
getX1() - Method in class ome.xml.model.Line
 
getX2() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
The bottom right x coordinate of this group.
getX2() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
The bottom right x coordinate of this group.
getX2() - Method in class ome.xml.model.Line
 
getXAxisUpperLeft() - Method in class loci.poi.hssf.record.LegendRecord
Get the x axis upper left field for the Legend record.
getXBasis() - Method in class loci.poi.hssf.record.FontBasisRecord
Get the x Basis field for the FontBasis record.
getXBATChainOffset(int) - Static method in class loci.poi.poifs.storage.BATBlock
 
getXBATCount() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getXBATIndex() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getXFAt(int) - Method in class loci.poi.hssf.record.MulBlankRecord
returns the xf index for column (coffset = column - field_2_first_col)
getXFAt(int) - Method in class loci.poi.hssf.record.MulRKRecord
returns the xf index for column (coffset = column - field_2_first_col)
getXFields() - Method in class loci.formats.in.ND2Handler
 
getXFIndex() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getXFIndex() - Method in class loci.poi.hssf.record.BlankRecord
get the index of the extended format record to style this cell with
getXFIndex() - Method in class loci.poi.hssf.record.BoolErrRecord
get the index to the ExtendedFormat
getXFIndex() - Method in interface loci.poi.hssf.record.CellValueRecordInterface
 
getXFIndex() - Method in class loci.poi.hssf.record.ColumnInfoRecord
get the columns' default format info
getXFIndex() - Method in class loci.poi.hssf.record.FormulaRecord
 
getXFIndex() - Method in class loci.poi.hssf.record.LabelRecord
 
getXFIndex() - Method in class loci.poi.hssf.record.LabelSSTRecord
get the index to the extended format record
getXFIndex() - Method in class loci.poi.hssf.record.NumberRecord
get the index to the ExtendedFormat
getXFIndex() - Method in class loci.poi.hssf.record.RKRecord
 
getXFIndex() - Method in class loci.poi.hssf.record.RowRecord
if the row is formatted then this is the index to the extended format record
getXFIndex() - Method in class loci.poi.hssf.record.StyleRecord
get the actual index of the style extended format record
getXFIndexForColAt(short) - Method in class loci.poi.hssf.model.Sheet
get the index to the ExtendedFormatRecord "associated" with the column at specified 0-based index.
getXfpos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getXFType() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether the cell is a cell or style XFRecord
getXML(Document) - Static method in class loci.common.xml.XMLTools
Converts the given DOM back to a string.
getXML() - Method in class loci.formats.tools.EditTiffG
 
getXML(Document) - Static method in class ome.scifio.xml.XMLTools
Converts the given DOM back to a string.
getXMLAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getXMLAnnotationAnnotationCount(int) - Method in class loci.formats.meta.AggregateMetadata
 
getXMLAnnotationAnnotationCount(int) - Method in class loci.formats.meta.DummyMetadata
 
getXMLAnnotationAnnotationCount(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getXMLAnnotationAnnotationCount(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getXMLAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.AggregateMetadata
 
getXMLAnnotationAnnotationRef(int, int) - Method in class loci.formats.meta.DummyMetadata
 
getXMLAnnotationAnnotationRef(int, int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getXMLAnnotationAnnotationRef(int, int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getXMLAnnotationAnnotator(int) - Method in class loci.formats.meta.AggregateMetadata
 
getXMLAnnotationAnnotator(int) - Method in class loci.formats.meta.DummyMetadata
 
getXMLAnnotationAnnotator(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getXMLAnnotationAnnotator(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getXMLAnnotationCount() - Method in class loci.formats.meta.AggregateMetadata
 
getXMLAnnotationCount() - Method in class loci.formats.meta.DummyMetadata
 
getXMLAnnotationCount() - Method in interface loci.formats.meta.MetadataRetrieve
 
getXMLAnnotationCount() - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getXMLAnnotationDescription(int) - Method in class loci.formats.meta.AggregateMetadata
 
getXMLAnnotationDescription(int) - Method in class loci.formats.meta.DummyMetadata
 
getXMLAnnotationDescription(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getXMLAnnotationDescription(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getXMLAnnotationID(int) - Method in class loci.formats.meta.AggregateMetadata
 
getXMLAnnotationID(int) - Method in class loci.formats.meta.DummyMetadata
 
getXMLAnnotationID(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getXMLAnnotationID(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getXMLAnnotationNamespace(int) - Method in class loci.formats.meta.AggregateMetadata
 
getXMLAnnotationNamespace(int) - Method in class loci.formats.meta.DummyMetadata
 
getXMLAnnotationNamespace(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getXMLAnnotationNamespace(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getXMLAnnotationValue(int) - Method in class loci.formats.meta.AggregateMetadata
 
getXMLAnnotationValue(int) - Method in class loci.formats.meta.DummyMetadata
 
getXMLAnnotationValue(int) - Method in interface loci.formats.meta.MetadataRetrieve
 
getXMLAnnotationValue(int) - Method in class loci.formats.ome.OMEXMLMetadataImpl
 
getXmlFooter() - Static method in class loci.formats.tools.PrintFormatTable
 
getXmlFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable
 
getXmlHeader() - Static method in class loci.formats.tools.PrintFormatTable
 
getXPoints() - Method in class loci.poi.hssf.usermodel.HSSFPolygon
 
getXPosition() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getXPosition(String) - Method in class loci.poi.hssf.util.RangeAddress
 
getXPositions() - Method in class loci.formats.in.ND2Handler
 
getXResolution() - Method in class loci.formats.tiff.IFD
Retrieve the X resolution (TIFF tag XResolution) from this IFD.
getXSize() - Method in class loci.poi.hssf.record.LegendRecord
Get the x size field for the Legend record.
getY() - Method in class loci.poi.hssf.record.AxisParentRecord
Get the y field for the AxisParent record.
getY() - Method in class loci.poi.hssf.record.ChartRecord
Get the y field for the Chart record.
getY() - Method in class loci.poi.hssf.record.PaneRecord
Get the y field for the Pane record.
getY() - Method in class loci.poi.hssf.record.TextRecord
Get the y field for the Text record.
getY() - Method in class ome.xml.model.Ellipse
 
getY() - Method in class ome.xml.model.Label
 
getY() - Method in class ome.xml.model.Mask
 
getY() - Method in class ome.xml.model.Point
 
getY() - Method in class ome.xml.model.Rectangle
 
getY() - Method in class ome.xml.model.StageLabel
 
getY1() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
The top left y coordinate of this group.
getY1() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
The top left y coordinate of this group.
getY1() - Method in class ome.xml.model.Line
 
getY2() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
The bottom right y coordinate of this group.
getY2() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
The bottom right y coordinate of this group.
getY2() - Method in class ome.xml.model.Line
 
getYAxisUpperLeft() - Method in class loci.poi.hssf.record.LegendRecord
Get the y axis upper left field for the Legend record.
getYBasis() - Method in class loci.poi.hssf.record.FontBasisRecord
Get the y Basis field for the FontBasis record.
getYPoints() - Method in class loci.poi.hssf.usermodel.HSSFPolygon
 
getYPosition() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getYPosition(String) - Method in class loci.poi.hssf.util.RangeAddress
 
getYPositions() - Method in class loci.formats.in.ND2Handler
 
getYResolution() - Method in class loci.formats.tiff.IFD
Retrieve the Y resolution (TIFF tag YResolution) from this IFD.
getYSize() - Method in class loci.poi.hssf.record.LegendRecord
Get the y size field for the Legend record.
getZ() - Method in class loci.formats.gui.ImageViewer
Gets the Z value of the currently displayed image.
getZ() - Method in class ome.xml.model.StageLabel
 
getZBegin(int) - Method in class loci.plugins.in.ImporterOptions
 
getZBegin(int) - Method in class loci.plugins.in.ImportProcess
 
getZCount(int) - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.SERIES.
getZCTCoords(int) - Method in class loci.formats.ChannelMerger
 
getZCTCoords(int) - Method in class loci.formats.ChannelSeparator
 
getZCTCoords(int) - Method in class loci.formats.DimensionSwapper
 
getZCTCoords(int) - Method in class loci.formats.FileStitcher
 
getZCTCoords(int) - Method in class loci.formats.FormatReader
 
getZCTCoords(IFormatReader, int) - Static method in class loci.formats.FormatTools
Gets the Z, C and T coordinates corresponding to the given rasterized index value.
getZCTCoords(String, int, int, int, int, int) - Static method in class loci.formats.FormatTools
Gets the Z, C and T coordinates corresponding to the given rasterized index value.
getZCTCoords(int) - Method in interface loci.formats.IFormatReader
Gets the Z, C and T coordinates corresponding to the given rasterized index value.
getZCTCoords(int) - Method in class loci.formats.ImageReader
 
getZCTCoords(int) - Method in class loci.formats.ReaderWrapper
 
getZCTCoords(Double, Double[], Double[], Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getZEnd(int) - Method in class loci.plugins.in.ImporterOptions
 
getZEnd(int) - Method in class loci.plugins.in.ImportProcess
Valid only after ImportStep.STACK.
getZero1() - Method in class loci.poi.hssf.record.TickRecord
Get the zero 1 field for the Tick record.
getZero2() - Method in class loci.poi.hssf.record.TickRecord
Get the zero 2 field for the Tick record.
getZero3() - Method in class loci.poi.hssf.record.TickRecord
Get the zero 3 field for the Tick record.
getZeroHeight() - Method in class loci.poi.hssf.record.RowRecord
get whether or not to display this row with 0 height
getZeroHeight() - Method in class loci.poi.hssf.usermodel.HSSFRow
get whether or not to display this row with 0 height
getZoom() - Method in class loci.formats.in.MetamorphHandler
 
getZoom() - Method in class ome.xml.model.Detector
 
getZoom() - Method in class ome.xml.model.DetectorSettings
 
getZPositions() - Method in class loci.formats.in.MetamorphHandler
 
getZPositions() - Method in class loci.formats.in.ND2Handler
 
getZSections() - Method in class loci.formats.in.ND2Handler
 
getZSlices(int) - Method in class loci.formats.in.LegacyND2Reader
 
getZStep(int) - Method in class loci.plugins.in.ImporterOptions
 
getZStep(int) - Method in class loci.plugins.in.ImportProcess
 
GIF_MAGIC_STRING - Static variable in class loci.formats.in.GIFReader
 
GIFImageMetadata - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
GIFImageMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
GIFImageMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources
 
GIFImageWriter - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageWriter(GIFImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
GIFImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
 
GIFReader - Class in loci.formats.in
GIFReader is the file format reader for Graphics Interchange Format (GIF) files.
GIFReader() - Constructor for class loci.formats.in.GIFReader
Constructs a new GIF reader.
GIFStreamMetadata - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFStreamMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
GIFStreamMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
GIFStreamMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFStreamMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFStreamMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources
 
globalColorTable - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
GPS_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
An array of bytes containing the values {'2', '2', '0', '0'} to be used with the "GPSVersionID" tag to indicate GPS version 2.2.
GRAPHICS_DOMAIN - Static variable in class loci.formats.FormatTools
Identifies the graphics domain.
GRAY_RESPONSE_CURVE - Static variable in class loci.formats.tiff.IFD
 
GRAY_RESPONSE_UNIT - Static variable in class loci.formats.tiff.IFD
 
GRAY_RESPONSE_UNIT_HUNDRED_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "GrayResponseUnit" tag.
GRAY_RESPONSE_UNIT_HUNDREDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "GrayResponseUnit" tag.
GRAY_RESPONSE_UNIT_TEN_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "GrayResponseUnit" tag.
GRAY_RESPONSE_UNIT_TENTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "GrayResponseUnit" tag.
GRAY_RESPONSE_UNIT_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "GrayResponseUnit" tag.
GREATER_THAN - Static variable in class mdbtools.dbengine.sql.Equation
 
GREATER_THAN_OR_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation
 
GreaterEqualPtg - Class in loci.poi.hssf.record.formula
PTG class to implement greater or equal to
GreaterEqualPtg() - Constructor for class loci.poi.hssf.record.formula.GreaterEqualPtg
Creates new GreaterEqualPtg
GreaterEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.GreaterEqualPtg
 
GreaterThanPtg - Class in loci.poi.hssf.record.formula
Greater than operator PTG ">"
GreaterThanPtg() - Constructor for class loci.poi.hssf.record.formula.GreaterThanPtg
Constructor.
GreaterThanPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.GreaterThanPtg
Constructor.
green - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
green - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
greenMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
greenX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
greenY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
greenZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
gridset - Variable in class loci.poi.hssf.model.Sheet
 
GridsetRecord - Class in loci.poi.hssf.record
Title: Gridset Record.
GridsetRecord() - Constructor for class loci.poi.hssf.record.GridsetRecord
 
GridsetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GridsetRecord
Constructs a GridSet record and sets its fields appropriately.
group - Variable in class loci.formats.FormatReader
Whether or not to group multi-file formats.
groupColumn(short, short) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Create an outline for the provided column range.
groupColumnRange(short, short, boolean) - Method in class loci.poi.hssf.model.Sheet
Creates an outline group for the specified columns.
groupColumnRange(short, short, boolean) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
Creates an outline group for the specified columns.
groupFilesBox - Variable in class loci.plugins.in.MainDialog
 
GroupMarkerSubRecord - Class in loci.poi.hssf.record
The group marker record is used as a position holder for groups.
GroupMarkerSubRecord() - Constructor for class loci.poi.hssf.record.GroupMarkerSubRecord
 
GroupMarkerSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GroupMarkerSubRecord
Constructs a group marker record and sets its fields appropriately.
groupRow(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
 
groupRowRange(int, int, boolean) - Method in class loci.poi.hssf.model.Sheet
 
GROUPSHAPE__1DADJUSTMENT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__BEHINDDOCUMENT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__DESCRIPTION - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__EDITEDWRAP - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__HIDDEN - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__HYPERLINK - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__ISBUTTON - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__ONDBLCLICKNOTIFY - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__PRINT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__REGROUPID - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__SHAPENAME - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPDISTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPDISTLEFT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPDISTRIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPDISTTOP - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPPOLYGONVERTICES - Static variable in class loci.poi.ddf.EscherProperties
 
GuardBitsSpec - Class in jj2000.j2k.quantization
This class extends ModuleSpec class in order to hold specifications about number of guard bits in each tile-component.
GuardBitsSpec(int, int, byte) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec
Constructs an empty 'GuardBitsSpec' with specified number of tile and components.
GuardBitsSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec
Constructs a new 'GuardBitsSpec' for the specified number of components and tiles and the arguments of "-Qguard_bits" option.
GUITools - Class in loci.formats.gui
A utility class for working with graphical user interfaces.
GutsRecord - Class in loci.poi.hssf.record
Title: Guts Record
GutsRecord() - Constructor for class loci.poi.hssf.record.GutsRecord
 
GutsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GutsRecord
Constructs a Guts record and sets its fields appropriately.
GZipHandle - Class in loci.common
A legacy delegator class for ome.scifio.io.GZipHandle.
GZipHandle(String) - Constructor for class loci.common.GZipHandle
Construct a new GZipHandle for the given file.
GZipHandle - Class in ome.scifio.io
StreamHandle implementation for reading from gzip-compressed files or byte arrays.
GZipHandle(String) - Constructor for class ome.scifio.io.GZipHandle
Construct a new GZipHandle for the given file.

H

h - Variable in class jj2000.j2k.codestream.CoordInfo
Object's height
h - Variable in class jj2000.j2k.codestream.PrecInfo
Precinct height in the corresponding resolution level
h - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
Height of the code-block
h - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder
The vertical dimensions of the base level
h - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder
The vertical dimensions of the base level
h - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk
The height of the code-block
h - Variable in class jj2000.j2k.image.DataBlk
The height of the block, in pixels.
h - Variable in class jj2000.j2k.image.input.ImgReader
The height of the image
h - Variable in class jj2000.j2k.roi.encoder.ROI
height of rectangular ROI
h - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
Height of the subband mask
h - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
The height of the code-block
h - Variable in class jj2000.j2k.wavelet.Subband
The height of the subband
HAIR - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
HALFTONE_HINTS - Static variable in class loci.formats.tiff.IFD
 
HamamatsuVMSReader - Class in loci.formats.in
HamamatsuVMSReader is the file format reader for Hamamatsu VMS datasets.
HamamatsuVMSReader() - Constructor for class loci.formats.in.HamamatsuVMSReader
Constructs a new Hamamatsu VMS reader.
handle - Variable in class loci.common.AbstractNIOHandle
 
handleException(Throwable) - Static method in class jj2000.j2k.JJ2KExceptionHandler
Handles the exception.
HandleException - Exception in loci.common
A legacy delegator class for ome.scifio.io.HandleException.
HandleException() - Constructor for exception loci.common.HandleException
 
HandleException(String) - Constructor for exception loci.common.HandleException
 
HandleException(String, Throwable) - Constructor for exception loci.common.HandleException
 
HandleException(Throwable) - Constructor for exception loci.common.HandleException
 
HandleException - Exception in ome.scifio.io
HandleException is the exception thrown when something goes wrong in one of the custom I/O classes.
HandleException() - Constructor for exception ome.scifio.io.HandleException
 
HandleException(String) - Constructor for exception ome.scifio.io.HandleException
 
HandleException(String, Throwable) - Constructor for exception ome.scifio.io.HandleException
 
HandleException(Throwable) - Constructor for exception ome.scifio.io.HandleException
 
handleExtension(String, Object[]) - Method in class loci.plugins.macro.MacroFunctions
 
handleMetadataStore(IFormatReader) - Method in class loci.formats.Memoizer
: Serialization: If an unknown MetadataStore implementation is passed in when no memo file exists, then a replacement MetadataStore will be created and set on the ReaderWrapper.reader delegate before calling ReaderWrapper.setId(String).
handler - Variable in class loci.common.xml.BaseHandler
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.ColorDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.CropDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.FilePatternDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.IdDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.ImporterDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.LocationDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.MainDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.MemoryDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.RangeDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.SeriesDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.SwapDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.UpgradeDialog
 
hasCell() - Method in class loci.poi.hssf.util.RangeAddress
 
hasChildNodes() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
hasCompanionFiles - Variable in class loci.formats.FormatReader
Whether this format supports multi-file datasets.
hasCompanionFiles() - Method in class loci.formats.FormatReader
 
hasCompanionFiles() - Method in interface loci.formats.IFormatReader
Returns true if this format supports multi-file datasets.
hasCompanionFiles() - Method in class loci.formats.ImageReader
 
hasCompanionFiles() - Method in class loci.formats.ReaderWrapper
 
hasExposureTime(int) - Method in class loci.tests.testng.Configuration
 
hasExtendedMeasureInfo - Variable in class loci.formats.in.SDTInfo
 
hasFlattenedResolutions() - Method in class loci.formats.FormatReader
 
hasFlattenedResolutions() - Method in interface loci.formats.IFormatReader
Return whether or not resolution flattening is enabled.
hasFlattenedResolutions() - Method in class loci.formats.ImageReader
 
hasFlattenedResolutions() - Method in class loci.formats.ReaderWrapper
 
Hash(short, byte) - Static method in class com.sun.media.imageioimpl.common.LZWStringTable
 
hashCode() - Method in class loci.common.AbstractNIOHandle
 
hashCode() - Method in class loci.common.adapter.CodedEnumAdapter.LegacyWrapper
 
hashCode() - Method in class loci.common.adapter.CodedEnumAdapter.ModernWrapper
 
hashCode() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper
 
hashCode() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper
 
hashCode() - Method in class loci.common.adapter.StatusListenerAdapter.LegacyWrapper
 
hashCode() - Method in class loci.common.adapter.StatusListenerAdapter.ModernWrapper
 
hashCode() - Method in class loci.common.adapter.StatusReporterAdapter.LegacyWrapper
 
hashCode() - Method in class loci.common.adapter.StatusReporterAdapter.ModernWrapper
 
hashCode() - Method in class loci.common.CBZip2InputStream
 
hashCode() - Method in class loci.common.CRC
 
hashCode() - Method in exception loci.common.enumeration.EnumException
 
hashCode() - Method in class loci.common.FileHandle
 
hashCode() - Method in exception loci.common.HandleException
 
hashCode() - Method in class loci.common.IniList
 
hashCode() - Method in class loci.common.IniParser
 
hashCode() - Method in class loci.common.IniTable
 
hashCode() - Method in class loci.common.IniWriter
 
hashCode() - Method in class loci.common.Location
 
hashCode() - Method in class loci.common.RandomAccessInputStream
 
hashCode() - Method in class loci.common.RandomAccessOutputStream
 
hashCode() - Method in class loci.common.ReflectedUniverse
 
hashCode() - Method in exception loci.common.ReflectException
 
hashCode() - Method in class loci.common.Region
 
hashCode() - Method in class loci.common.StreamHandle
 
hashCode() - Method in class loci.common.xml.BaseHandler
 
hashCode() - Method in class loci.common.xml.ParserErrorHandler
 
hashCode() - Method in class loci.common.xml.ValidationErrorHandler
 
hashCode() - Method in class loci.formats.tiff.TiffRational
Reasonable hash value for use with hashtables.
hashCode() - Method in class loci.plugins.config.FormatEntry
 
hashCode() - Method in class loci.plugins.prefs.OptionsList
 
hashCode() - Method in class loci.poi.ddf.EscherComplexProperty
Calculates a hashcode for this property.
hashCode() - Method in class loci.poi.ddf.EscherSimpleProperty
Returns a hashcode so that this object can be stored in collections that require the use of such things.
hashCode() - Method in class loci.poi.hpsf.ClassID
 
hashCode() - Method in class loci.poi.hpsf.CustomProperty
 
hashCode() - Method in class loci.poi.hpsf.Property
 
hashCode() - Method in class loci.poi.hpsf.PropertySet
 
hashCode() - Method in class loci.poi.hpsf.Section
 
hashCode() - Method in class loci.poi.hpsf.SpecialPropertySet
 
hashCode() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
hashCode() - Method in class loci.poi.hssf.record.SSTRecord
 
hashCode() - Method in class loci.poi.hssf.record.UnicodeString
 
hashCode() - Method in class loci.poi.poifs.filesystem.DocumentDescriptor
calculate and return the hashcode
hashCode() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath
calculate and return the hashcode
hashCode() - Method in class loci.poi.util.DoubleList
THIS MOST LIKELY DOES NOT WORK Returns the hash code value for this list.
hashCode() - Method in class loci.poi.util.IntList
Returns the hash code value for this list.
hashCode() - Method in class loci.poi.util.ShortList
Returns the hash code value for this list.
hashCode() - Method in class loci.tests.testng.Configuration
 
hashCode() - Method in class ome.scifio.common.Region
 
hashCode() - Method in class ome.scifio.io.Location
 
hashPassword(String) - Static method in class loci.poi.hssf.record.FileSharingRecord
 
hashPassword(String) - Static method in class loci.poi.hssf.record.PasswordRecord
 
hasImageDescription() - Method in class loci.tests.testng.Configuration
 
hasJPEGTables - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
hasMeasFCSInfo - Variable in class loci.formats.in.SDTInfo
 
hasMeasHISTInfo - Variable in class loci.formats.in.SDTInfo
 
hasMeasStopInfo - Variable in class loci.formats.in.SDTInfo
 
hasMeasureInfo - Variable in class loci.formats.in.SDTInfo
 
hasMultibyte(String) - Static method in class loci.poi.util.StringUtil
check the parameter has multibyte character
hasNext() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator
 
hasNextRecord() - Method in class loci.poi.hssf.record.RecordInputStream
 
hasPlainTextExtension - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
hasRange() - Method in class loci.poi.hssf.util.RangeAddress
 
hasSheetName() - Method in class loci.poi.hssf.util.RangeAddress
 
hasThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
hasValueNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Returns true if there are mnemonic names associated with the set of legal values for the data associated with this tag.
hbuf - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
The DataOutputStream to store header data.
HCenterRecord - Class in loci.poi.hssf.record
Title: HCenter record
HCenterRecord() - Constructor for class loci.poi.hssf.record.HCenterRecord
 
HCenterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HCenterRecord
Constructs an HCenter record and sets its fields appropriately.
HCS_DOMAIN - Static variable in class loci.formats.FormatTools
Identifies the high content screening domain.
hd - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The decoded bit stream header
HDF_MAGIC_STRING - Static variable in class loci.formats.in.ImarisHDFReader
 
header - Variable in class loci.poi.hssf.model.Sheet
 
HEADER_KEY - Static variable in class loci.common.IniTable
Key to use for storing header value (in brackets).
HEADER_KEY - Static variable in class ome.scifio.common.IniTable
Key to use for storing header value (in brackets).
HEADER_MARKER - Static variable in class loci.formats.in.VisitechReader
 
HEADER_SIZE - Static variable in class loci.formats.in.UBMReader
 
HeaderBlockConstants - Interface in loci.poi.poifs.storage
Constants used in reading/writing the Header block
HeaderBlockReader - Class in loci.poi.poifs.storage
The block containing the archive header
HeaderBlockReader(InputStream, int) - Constructor for class loci.poi.poifs.storage.HeaderBlockReader
create a new HeaderBlockReader from an InputStream
HeaderBlockWriter - Class in loci.poi.poifs.storage
The block containing the archive header
HeaderBlockWriter(int) - Constructor for class loci.poi.poifs.storage.HeaderBlockWriter
Create a single instance initialized with default values
HeaderBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is defined to represent an Image Header Box of JPEG JP2 file format.
HeaderBox(int, int, int, int, int, int, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Create an Image Header Box from the element values.
HeaderBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Create an Image Header Box using the content data.
HeaderBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
Constructs an Image Header Box from a Node.
HeaderDecoder - Class in jj2000.j2k.codestream.reader
This class reads Main and Tile-part headers from the codestream.
HeaderDecoder(RandomAccessIO, J2KImageReadParamJava, HeaderInfo) - Constructor for class jj2000.j2k.codestream.reader.HeaderDecoder
Creates a HeaderDecoder instance and read in two passes the main header of the codestream.
HeaderEncoder - Class in jj2000.j2k.codestream.writer
This class writes almost of the markers and marker segments in main header and in tile-part headers.
HeaderEncoder(ImgData, boolean[], ForwardWT, Tiler, J2KImageWriteParamJava, ROIScaler, PostCompRateAllocator) - Constructor for class jj2000.j2k.codestream.writer.HeaderEncoder
Initializes the header writer with the references to the coding chain.
headerIFDs - Variable in class loci.formats.in.LeicaReader
Array of IFD-like structures containing metadata.
HeaderInfo - Class in jj2000.j2k.codestream
Classe that holds information found in the marker segments of the main and tile-part headers.
HeaderInfo() - Constructor for class jj2000.j2k.codestream.HeaderInfo
 
HeaderInfo.COC - Class in jj2000.j2k.codestream
Internal class holding information found in the COC marker segments
HeaderInfo.COC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COC
 
HeaderInfo.COD - Class in jj2000.j2k.codestream
Internal class holding information found in the COD marker segments
HeaderInfo.COD() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COD
 
HeaderInfo.COM - Class in jj2000.j2k.codestream
Internal class holding information found in the COM marker segments
HeaderInfo.COM() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COM
 
HeaderInfo.CRG - Class in jj2000.j2k.codestream
Internal class holding information found in the CRG marker segment
HeaderInfo.CRG() - Constructor for class jj2000.j2k.codestream.HeaderInfo.CRG
 
HeaderInfo.POC - Class in jj2000.j2k.codestream
Internal class holding information found in the POC marker segments
HeaderInfo.POC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.POC
 
HeaderInfo.QCC - Class in jj2000.j2k.codestream
Internal class holding information found in the QCC marker segments
HeaderInfo.QCC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.QCC
 
HeaderInfo.QCD - Class in jj2000.j2k.codestream
Internal class holding information found in the QCD marker segments
HeaderInfo.QCD() - Constructor for class jj2000.j2k.codestream.HeaderInfo.QCD
 
HeaderInfo.RGN - Class in jj2000.j2k.codestream
Internal class holding information found in the RGN marker segments
HeaderInfo.RGN() - Constructor for class jj2000.j2k.codestream.HeaderInfo.RGN
 
HeaderInfo.SIZ - Class in jj2000.j2k.codestream
Internal class holding information found in the SIZ marker segment
HeaderInfo.SIZ() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SIZ
 
HeaderInfo.SOT - Class in jj2000.j2k.codestream
Internal class holding information found in the SOt marker segments
HeaderInfo.SOT() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SOT
 
HeaderRecord - Class in loci.poi.hssf.record
Title: Header Record
HeaderRecord() - Constructor for class loci.poi.hssf.record.HeaderRecord
 
HeaderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HeaderRecord
Constructs an Header record and sets its fields appropriately.
headerValid - Variable in class loci.formats.in.SDTInfo
 
height - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
The image's height in pixels.
height - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
height - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
height - Variable in class loci.formats.codec.CodecOptions
Height, in pixels, of the image.
height - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
 
height - Variable in class loci.formats.in.SDTInfo
 
height - Variable in class loci.formats.tools.AmiraParameters
 
height - Variable in class ome.scifio.common.Region
 
HELIOS_TAG - Static variable in class loci.formats.in.FEITiffReader
 
HELP_MENU - Static variable in class loci.plugins.shortcut.ShortcutPanel
Name of the 'About Plugins' submenu.
HexDump - Class in loci.poi.util
dump data in hexadecimal format; derived from a HexDump utility I wrote in June 2001.
HexRead - Class in loci.poi.util
Utilities to read hex from files.
HexRead() - Constructor for class loci.poi.util.HexRead
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.AQUA
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLACK
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BROWN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.CORAL
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GOLD
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.INDIGO
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIME
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.MAROON
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ORANGE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ORCHID
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PINK
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.RED
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ROSE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TAN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.WHITE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW
 
hFilter - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn
The horizontal analysis filter used to decompose this subband.
hFilter - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn
The horizontal analysis filter used to recompose this subband, from its childs.
hh - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
The subband masks of the child HH
HIDE_ALL - Static variable in class loci.poi.hssf.record.HideObjRecord
 
HideObjRecord - Class in loci.poi.hssf.record
Title: Hide Object Record
HideObjRecord() - Constructor for class loci.poi.hssf.record.HideObjRecord
 
HideObjRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HideObjRecord
Constructs an HideObj record and sets its fields appropriately.
HIGH_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy
 
HIS_MAGIC_STRING - Static variable in class loci.formats.in.HISReader
 
HISReader - Class in loci.formats.in
HISReader is the file format reader for Hamamatsu .his files.
HISReader() - Constructor for class loci.formats.in.HISReader
Constructs a new Hamamatsu .his reader.
HISTOLOGY_DOMAIN - Static variable in class loci.formats.FormatTools
Identifies the histology domain.
HISTORY_MASK - Static variable in class loci.poi.hssf.record.BOFRecord
suggested default for a normal sheet (0x41)
hit(Rectangle, Shape, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
hit(Rectangle, Shape, boolean) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
HitachiReader - Class in loci.formats.in
HitachiReader is the file format reader for S-4800 files.
HitachiReader() - Constructor for class loci.formats.in.HitachiReader
Constructs a new Hitachi reader.
hitClip(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
hl - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
The subband masks of the child HL
Holder - Class in mdbtools.libmdb
 
Holder() - Constructor for class mdbtools.libmdb.Holder
 
HORIZONTAL_ALIGNMENT_BOTTOM - Static variable in class loci.poi.hssf.record.TextRecord
 
HORIZONTAL_ALIGNMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord
 
HORIZONTAL_ALIGNMENT_JUSTIFY - Static variable in class loci.poi.hssf.record.TextRecord
 
HORIZONTAL_ALIGNMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord
 
HORIZONTAL_SID - Static variable in class loci.poi.hssf.record.PageBreakRecord
 
HORIZONTAL_TEXT_ALIGNMENT_CENTERED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord
 
HORIZONTAL_TEXT_ALIGNMENT_JUSTIFIED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord
 
HORIZONTAL_TEXT_ALIGNMENT_LEFT_ALIGNED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord
 
HORIZONTAL_TEXT_ALIGNMENT_RIGHT_ALIGNED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord
 
HorizontalPageBreakRecord - Class in loci.poi.hssf.record
HorizontalPageBreak record that stores page breaks at rows
HorizontalPageBreakRecord() - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord
 
HorizontalPageBreakRecord(short) - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord
 
HorizontalPageBreakRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord
 
horz - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Black and white horizontal mode table.
horzMode - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Horizontal mode table.
HOST_COMPUTER - Static variable in class loci.formats.tiff.IFD
 
HPSFException - Exception in loci.poi.hpsf
This exception is the superclass of all other checked exceptions thrown in this package.
HPSFException() - Constructor for exception loci.poi.hpsf.HPSFException
Creates an HPSFException.
HPSFException(String) - Constructor for exception loci.poi.hpsf.HPSFException
Creates an HPSFException with a message string.
HPSFException(Throwable) - Constructor for exception loci.poi.hpsf.HPSFException
Creates a new HPSFException with a reason.
HPSFException(String, Throwable) - Constructor for exception loci.poi.hpsf.HPSFException
Creates an HPSFException with a message string and a reason.
HPSFRuntimeException - Exception in loci.poi.hpsf
This exception is the superclass of all other unchecked exceptions thrown in this package.
HPSFRuntimeException() - Constructor for exception loci.poi.hpsf.HPSFRuntimeException
Creates a new HPSFRuntimeException.
HPSFRuntimeException(String) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException
Creates a new HPSFRuntimeException with a message string.
HPSFRuntimeException(Throwable) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException
Creates a new HPSFRuntimeException with a reason.
HPSFRuntimeException(String, Throwable) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException
Creates a new HPSFRuntimeException with a message string and a reason.
HRDGDFReader - Class in loci.formats.in
HRDGDFReader is the file format reader for the Gridded Data Format used by NOAA's Hurricane Research Division.
HRDGDFReader() - Constructor for class loci.formats.in.HRDGDFReader
Constructs a new Gridded Data Format reader.
HSSF - Class in loci.poi.hssf.dev
File for HSSF testing/examples THIS IS NOT THE MAIN HSSF FILE!! This is a util for testing functionality.
HSSF(String) - Constructor for class loci.poi.hssf.dev.HSSF
Constructor HSSF - creates an HSSFStream from an InputStream.
HSSF(String, boolean) - Constructor for class loci.poi.hssf.dev.HSSF
Constructor HSSF - given a filename this outputs a sample sheet with just a set of rows/cells.
HSSF(String, String, boolean) - Constructor for class loci.poi.hssf.dev.HSSF
Constructor HSSF - takes in file - attempts to read it then reconstruct it
HSSFAnchor - Class in loci.poi.hssf.usermodel
An anchor is what specifics the position of a shape within a client object or within another containing shape.
HSSFAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFAnchor
 
HSSFAnchor(int, int, int, int) - Constructor for class loci.poi.hssf.usermodel.HSSFAnchor
 
HSSFCell - Class in loci.poi.hssf.usermodel
High level representation of a cell in a row of a spreadsheet.
HSSFCell(Workbook, Sheet, int, short) - Constructor for class loci.poi.hssf.usermodel.HSSFCell
Creates new Cell - Should only be called by HSSFRow.
HSSFCell(Workbook, Sheet, int, short, int) - Constructor for class loci.poi.hssf.usermodel.HSSFCell
Creates new Cell - Should only be called by HSSFRow.
HSSFCell(Workbook, Sheet, int, CellValueRecordInterface) - Constructor for class loci.poi.hssf.usermodel.HSSFCell
Creates an HSSFCell from a CellValueRecordInterface.
HSSFCellStyle - Class in loci.poi.hssf.usermodel
High level representation of the style of a cell in a sheet of a workbook.
HSSFCellStyle(short, ExtendedFormatRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFCellStyle
Creates new HSSFCellStyle why would you want to do this??
HSSFChildAnchor - Class in loci.poi.hssf.usermodel
 
HSSFChildAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFChildAnchor
 
HSSFChildAnchor(int, int, int, int) - Constructor for class loci.poi.hssf.usermodel.HSSFChildAnchor
 
HSSFClientAnchor - Class in loci.poi.hssf.usermodel
A client anchor is attached to an excel worksheet.
HSSFClientAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFClientAnchor
Creates a new client anchor and defaults all the anchor positions to 0.
HSSFClientAnchor(int, int, int, int, short, int, short, int) - Constructor for class loci.poi.hssf.usermodel.HSSFClientAnchor
Creates a new client anchor and sets the top-left and bottom-right coordinates of the anchor.
HSSFColor - Class in loci.poi.hssf.util
Intends to provide support for the very evil index to triplet issue and will likely replace the color contants interface for HSSF 2.0.
HSSFColor() - Constructor for class loci.poi.hssf.util.HSSFColor
Creates a new instance of HSSFColor
HSSFColor.AQUA - Class in loci.poi.hssf.util
Class AQUA
HSSFColor.AQUA() - Constructor for class loci.poi.hssf.util.HSSFColor.AQUA
 
HSSFColor.AUTOMATIC - Class in loci.poi.hssf.util
Special Default/Normal/Automatic color.
HSSFColor.AUTOMATIC() - Constructor for class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
HSSFColor.BLACK - Class in loci.poi.hssf.util
Class BLACK
HSSFColor.BLACK() - Constructor for class loci.poi.hssf.util.HSSFColor.BLACK
 
HSSFColor.BLUE - Class in loci.poi.hssf.util
Class BLUE
HSSFColor.BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.BLUE
 
HSSFColor.BLUE_GREY - Class in loci.poi.hssf.util
Class BLUE_GREY
HSSFColor.BLUE_GREY() - Constructor for class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
HSSFColor.BRIGHT_GREEN - Class in loci.poi.hssf.util
Class BRIGHT_GREEN
HSSFColor.BRIGHT_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
HSSFColor.BROWN - Class in loci.poi.hssf.util
Class BROWN
HSSFColor.BROWN() - Constructor for class loci.poi.hssf.util.HSSFColor.BROWN
 
HSSFColor.CORAL - Class in loci.poi.hssf.util
Class CORAL
HSSFColor.CORAL() - Constructor for class loci.poi.hssf.util.HSSFColor.CORAL
 
HSSFColor.CORNFLOWER_BLUE - Class in loci.poi.hssf.util
Class CORNFLOWER_BLUE
HSSFColor.CORNFLOWER_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
HSSFColor.DARK_BLUE - Class in loci.poi.hssf.util
Class DARK_BLUE
HSSFColor.DARK_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
HSSFColor.DARK_GREEN - Class in loci.poi.hssf.util
Class DARK_GREEN
HSSFColor.DARK_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
HSSFColor.DARK_RED - Class in loci.poi.hssf.util
Class DARK_RED
HSSFColor.DARK_RED() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_RED
 
HSSFColor.DARK_TEAL - Class in loci.poi.hssf.util
Class DARK_TEAL
HSSFColor.DARK_TEAL() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
HSSFColor.DARK_YELLOW - Class in loci.poi.hssf.util
Class DARK_YELLOW
HSSFColor.DARK_YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
HSSFColor.GOLD - Class in loci.poi.hssf.util
Class GOLD
HSSFColor.GOLD() - Constructor for class loci.poi.hssf.util.HSSFColor.GOLD
 
HSSFColor.GREEN - Class in loci.poi.hssf.util
Class GREEN
HSSFColor.GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.GREEN
 
HSSFColor.GREY_25_PERCENT - Class in loci.poi.hssf.util
Class GREY_25_PERCENT
HSSFColor.GREY_25_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
HSSFColor.GREY_40_PERCENT - Class in loci.poi.hssf.util
Class GREY_40_PERCENT
HSSFColor.GREY_40_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
HSSFColor.GREY_50_PERCENT - Class in loci.poi.hssf.util
Class GREY_50_PERCENT
HSSFColor.GREY_50_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
HSSFColor.GREY_80_PERCENT - Class in loci.poi.hssf.util
Class GREY_80_PERCENT
HSSFColor.GREY_80_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
HSSFColor.INDIGO - Class in loci.poi.hssf.util
Class INDIGO
HSSFColor.INDIGO() - Constructor for class loci.poi.hssf.util.HSSFColor.INDIGO
 
HSSFColor.LAVENDER - Class in loci.poi.hssf.util
Class LAVENDER
HSSFColor.LAVENDER() - Constructor for class loci.poi.hssf.util.HSSFColor.LAVENDER
 
HSSFColor.LEMON_CHIFFON - Class in loci.poi.hssf.util
Class LEMON_CHIFFON
HSSFColor.LEMON_CHIFFON() - Constructor for class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
HSSFColor.LIGHT_BLUE - Class in loci.poi.hssf.util
Class LIGHT_BLUE
HSSFColor.LIGHT_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
HSSFColor.LIGHT_CORNFLOWER_BLUE - Class in loci.poi.hssf.util
Class LIGHT_CORNFLOWER_BLUE
HSSFColor.LIGHT_CORNFLOWER_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
HSSFColor.LIGHT_GREEN - Class in loci.poi.hssf.util
Class LIGHT_GREEN
HSSFColor.LIGHT_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
HSSFColor.LIGHT_ORANGE - Class in loci.poi.hssf.util
Class LIGHT_ORANGE
HSSFColor.LIGHT_ORANGE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
HSSFColor.LIGHT_TURQUOISE - Class in loci.poi.hssf.util
Class LIGHT_TURQUOISE
HSSFColor.LIGHT_TURQUOISE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
HSSFColor.LIGHT_YELLOW - Class in loci.poi.hssf.util
Class LIGHT_YELLOW
HSSFColor.LIGHT_YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
HSSFColor.LIME - Class in loci.poi.hssf.util
Class LIME
HSSFColor.LIME() - Constructor for class loci.poi.hssf.util.HSSFColor.LIME
 
HSSFColor.MAROON - Class in loci.poi.hssf.util
Class MAROON
HSSFColor.MAROON() - Constructor for class loci.poi.hssf.util.HSSFColor.MAROON
 
HSSFColor.OLIVE_GREEN - Class in loci.poi.hssf.util
Class OLIVE_GREEN
HSSFColor.OLIVE_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
HSSFColor.ORANGE - Class in loci.poi.hssf.util
Class ORANGE
HSSFColor.ORANGE() - Constructor for class loci.poi.hssf.util.HSSFColor.ORANGE
 
HSSFColor.ORCHID - Class in loci.poi.hssf.util
Class ORCHID
HSSFColor.ORCHID() - Constructor for class loci.poi.hssf.util.HSSFColor.ORCHID
 
HSSFColor.PALE_BLUE - Class in loci.poi.hssf.util
Class PALE_BLUE
HSSFColor.PALE_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
HSSFColor.PINK - Class in loci.poi.hssf.util
Class PINK
HSSFColor.PINK() - Constructor for class loci.poi.hssf.util.HSSFColor.PINK
 
HSSFColor.PLUM - Class in loci.poi.hssf.util
Class PLUM
HSSFColor.PLUM() - Constructor for class loci.poi.hssf.util.HSSFColor.PLUM
 
HSSFColor.RED - Class in loci.poi.hssf.util
Class RED
HSSFColor.RED() - Constructor for class loci.poi.hssf.util.HSSFColor.RED
 
HSSFColor.ROSE - Class in loci.poi.hssf.util
Class ROSE
HSSFColor.ROSE() - Constructor for class loci.poi.hssf.util.HSSFColor.ROSE
 
HSSFColor.ROYAL_BLUE - Class in loci.poi.hssf.util
Class ROYAL_BLUE
HSSFColor.ROYAL_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
HSSFColor.SEA_GREEN - Class in loci.poi.hssf.util
Class SEA_GREEN
HSSFColor.SEA_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
HSSFColor.SKY_BLUE - Class in loci.poi.hssf.util
Class SKY_BLUE
HSSFColor.SKY_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
HSSFColor.TAN - Class in loci.poi.hssf.util
Class TAN
HSSFColor.TAN() - Constructor for class loci.poi.hssf.util.HSSFColor.TAN
 
HSSFColor.TEAL - Class in loci.poi.hssf.util
Class TEAL
HSSFColor.TEAL() - Constructor for class loci.poi.hssf.util.HSSFColor.TEAL
 
HSSFColor.TURQUOISE - Class in loci.poi.hssf.util
Class TURQUOISE
HSSFColor.TURQUOISE() - Constructor for class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
HSSFColor.VIOLET - Class in loci.poi.hssf.util
Class VIOLET
HSSFColor.VIOLET() - Constructor for class loci.poi.hssf.util.HSSFColor.VIOLET
 
HSSFColor.WHITE - Class in loci.poi.hssf.util
Class WHITE
HSSFColor.WHITE() - Constructor for class loci.poi.hssf.util.HSSFColor.WHITE
 
HSSFColor.YELLOW - Class in loci.poi.hssf.util
Class YELLOW
HSSFColor.YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.YELLOW
 
HSSFComment - Class in loci.poi.hssf.usermodel
Represents a cell comment - a sticky note associated with a cell.
HSSFComment(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFComment
Construct a new comment with the given parent and anchor.
HSSFComment(NoteRecord, TextObjectRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFComment
 
HSSFDataFormat - Class in loci.poi.hssf.usermodel
Utility to identify builtin formats.
HSSFDataFormat(Workbook) - Constructor for class loci.poi.hssf.usermodel.HSSFDataFormat
Construncts a new data formatter.
HSSFDateUtil - Class in loci.poi.hssf.usermodel
Contains methods for dealing with Excel dates.
HSSFErrorConstants - Interface in loci.poi.hssf.usermodel
contains constants representing Excel error codes.
HSSFEventFactory - Class in loci.poi.hssf.eventusermodel
Low level event based HSSF reader.
HSSFEventFactory() - Constructor for class loci.poi.hssf.eventusermodel.HSSFEventFactory
Creates a new instance of HSSFEventFactory
HSSFFont - Class in loci.poi.hssf.usermodel
Represents a Font used in a workbook.
HSSFFont(short, FontRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFFont
Creates a new instance of HSSFFont
HSSFFooter - Class in loci.poi.hssf.usermodel
Class to read and manipulate the footer.
HSSFFooter(FooterRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFFooter
Constructor.
HSSFHeader - Class in loci.poi.hssf.usermodel
Class to read and manipulate the header.
HSSFHeader(HeaderRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFHeader
Constructor.
HSSFListener - Interface in loci.poi.hssf.eventusermodel
Interface for use with the HSSFRequest and HSSFEventFactory.
HSSFName - Class in loci.poi.hssf.usermodel
Title: High Level Represantion of Named Range
HSSFName(Workbook, NameRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFName
Creates new HSSFName - called by HSSFWorkbook to create a sheet from scratch.
HSSFObjectData - Class in loci.poi.hssf.usermodel
Represents binary object (i.e.
HSSFObjectData(ObjRecord, POIFSFileSystem) - Constructor for class loci.poi.hssf.usermodel.HSSFObjectData
Constructs object data by wrapping a lower level object record.
HSSFPalette - Class in loci.poi.hssf.usermodel
Represents a workbook color palette.
HSSFPalette(PaletteRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFPalette
 
HSSFPatriarch - Class in loci.poi.hssf.usermodel
The patriarch is the toplevel container for shapes in a sheet.
HSSFPicture - Class in loci.poi.hssf.usermodel
Represents a escher picture.
HSSFPictureData - Class in loci.poi.hssf.usermodel
Represents binary data stored in the file.
HSSFPolygon - Class in loci.poi.hssf.usermodel
 
HSSFPrintSetup - Class in loci.poi.hssf.usermodel
Used to modify the print setup.
HSSFPrintSetup(PrintSetupRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFPrintSetup
Constructor.
HSSFRequest - Class in loci.poi.hssf.eventusermodel
An HSSFRequest object should be constructed registering an instance or multiple instances of HSSFListener with each Record.sid you wish to listen for.
HSSFRequest() - Constructor for class loci.poi.hssf.eventusermodel.HSSFRequest
Creates a new instance of HSSFRequest
HSSFRichTextString - Class in loci.poi.hssf.usermodel
Rich text unicode string.
HSSFRichTextString() - Constructor for class loci.poi.hssf.usermodel.HSSFRichTextString
 
HSSFRichTextString(String) - Constructor for class loci.poi.hssf.usermodel.HSSFRichTextString
 
HSSFRow - Class in loci.poi.hssf.usermodel
High level representation of a row of a spreadsheet.
HSSFRow() - Constructor for class loci.poi.hssf.usermodel.HSSFRow
 
HSSFRow(Workbook, Sheet, int) - Constructor for class loci.poi.hssf.usermodel.HSSFRow
Creates new HSSFRow from scratch.
HSSFRow(Workbook, Sheet, RowRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFRow
Creates an HSSFRow from a low level RowRecord object.
HSSFShape - Class in loci.poi.hssf.usermodel
An abstract shape.
HSSFShapeContainer - Interface in loci.poi.hssf.usermodel
An interface that indicates whether a class can contain children.
HSSFShapeGroup - Class in loci.poi.hssf.usermodel
A shape group may contain other shapes.
HSSFShapeGroup(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFShapeGroup
 
HSSFSheet - Class in loci.poi.hssf.usermodel
High level representation of a worksheet.
HSSFSheet(HSSFWorkbook) - Constructor for class loci.poi.hssf.usermodel.HSSFSheet
Creates new HSSFSheet - called by HSSFWorkbook to create a sheet from scratch.
HSSFSheet(HSSFWorkbook, Sheet) - Constructor for class loci.poi.hssf.usermodel.HSSFSheet
Creates an HSSFSheet representing the given Sheet object.
HSSFSimpleShape - Class in loci.poi.hssf.usermodel
Represents a simple shape such as a line, rectangle or oval.
HSSFTextbox - Class in loci.poi.hssf.usermodel
A textbox is a shape that may hold a rich text string.
HSSFTextbox(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFTextbox
Construct a new textbox with the given parent and anchor.
HSSFUserException - Exception in loci.poi.hssf.eventusermodel
This exception is provided as a way for API users to throw exceptions from their event handling code.
HSSFUserException() - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException
Creates a new HSSFUserException.
HSSFUserException(String) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException
Creates a new HSSFUserException with a message string.
HSSFUserException(Throwable) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException
Creates a new HSSFUserException with a reason.
HSSFUserException(String, Throwable) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException
Creates a new HSSFUserException with a message string and a reason.
hssfworkbook - Variable in class loci.poi.hssf.dev.HSSF
 
HSSFWorkbook - Class in loci.poi.hssf.usermodel
High level representation of a workbook.
HSSFWorkbook() - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook
Creates new HSSFWorkbook from scratch (start here!)
HSSFWorkbook(Workbook) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook
 
HSSFWorkbook(POIFSFileSystem) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook
 
HSSFWorkbook(POIFSFileSystem, boolean) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook
given a POI POIFSFileSystem object, read in its Workbook and populate the high and low level models.
HSSFWorkbook(RandomAccessInputStream) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook
 
HSSFWorkbook(RandomAccessInputStream, boolean) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook
Companion to HSSFWorkbook(POIFSFileSystem), this constructs the POI filesystem around your inputstream.
HTM_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
 
HTML_REGEX - Static variable in class loci.formats.in.PerkinElmerReader
 
HTML_SUFFIX - Static variable in class loci.formats.in.VisitechReader
 
HuffmanCodec - Class in loci.formats.codec
This class implements Huffman decoding.
HuffmanCodec() - Constructor for class loci.formats.codec.HuffmanCodec
 
HuffmanCodecOptions - Class in loci.formats.codec
Options for compressing and decompressing Huffman data.
HuffmanCodecOptions() - Constructor for class loci.formats.codec.HuffmanCodecOptions
 

I

i - Variable in class mdbtools.libmdb.Holder
 
I18NImpl - Class in com.sun.media.imageioimpl.common
Class to simplify use of internationalization message strings.
I18NImpl() - Constructor for class com.sun.media.imageioimpl.common.I18NImpl
 
ICacheSource - Interface in loci.formats.cache
Interface for cache sources.
ICacheStrategy - Interface in loci.formats.cache
Interface for cache strategies.
iccs - Variable in class jj2000.j2k.decoder.DecoderSpecs
ICC Profiling specifications
icon - Variable in class loci.formats.gui.ImageViewer
 
icon - Variable in class loci.formats.gui.PreviewPane
 
iconLabel - Variable in class loci.formats.gui.ImageViewer
 
iconLabel - Variable in class loci.formats.gui.PreviewPane
Labels containing thumbnail and dimensional information.
iconText - Variable in class loci.formats.gui.PreviewPane
 
iconTip - Variable in class loci.formats.gui.PreviewPane
 
ICSReader - Class in loci.formats.in
ICSReader is the file format reader for ICS (Image Cytometry Standard) files.
ICSReader() - Constructor for class loci.formats.in.ICSReader
Constructs a new ICSReader.
ICSWriter - Class in loci.formats.out
ICSWriter is the file format writer for ICS files.
ICSWriter() - Constructor for class loci.formats.out.ICSWriter
 
id - Variable in class loci.plugins.util.BFVirtualStack
 
id - Variable in class loci.poi.ddf.EscherProperty
 
id - Variable in class loci.poi.hpsf.Property
The property's ID.
IdDialog - Class in loci.plugins.in
Bio-Formats Importer id chooser dialog box.
IdDialog(ImportProcess) - Constructor for class loci.plugins.in.IdDialog
Creates an id chooser dialog for the Bio-Formats Importer.
idLoc - Variable in class loci.plugins.in.ImportProcess
 
idName - Variable in class loci.plugins.in.ImportProcess
 
idx - Variable in class jj2000.j2k.codestream.CBlkCoordInfo
The code-block horizontal and vertical indexes
idxmap_base_pg - Variable in class mdbtools.libmdb.MdbTableDef
 
idxmap_sz - Variable in class mdbtools.libmdb.MdbTableDef
 
IEnumerationHandler - Interface in ome.xml.model.enums.handlers
An enumeration provider for making OME data model enumerations available.
IFD - Class in loci.formats.tiff
Data structure for working with TIFF Image File Directories (IFDs).
IFD() - Constructor for class loci.formats.tiff.IFD
 
IFD(IFD) - Constructor for class loci.formats.tiff.IFD
 
IFDList - Class in loci.formats.tiff
Data structure for working with a list of TIFF IFDs.
IFDList() - Constructor for class loci.formats.tiff.IFDList
 
ifds - Variable in class loci.formats.in.LeicaReader
 
ifds - Variable in class loci.formats.in.MinimalTiffReader
List of IFDs for the current TIFF.
IFDType - Enum in loci.formats.tiff
An enumeration of IFD types.
IFormatHandler - Interface in loci.formats
Interface for all biological file format readers and writers.
IFormatReader - Interface in loci.formats
Interface for all biological file format readers.
IFormatWidgets - Interface in loci.plugins.config
Interface for defining custom widgets for a specific file format reader.
IFormatWriter - Interface in loci.formats
Interface for all biological file format writers.
IISRandomAccessIO - Class in com.sun.media.imageioimpl.plugins.jpeg2000
A wrapper for converting an ImageInputStream into a RandomAccessIO.
IISRandomAccessIO(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
Creates a RandomAccessIO instance from the supplied ImageInputStream.
IJStatusEchoer - Class in loci.plugins.util
Echoes status messages to the ImageJ status bar.
IJStatusEchoer() - Constructor for class loci.plugins.util.IJStatusEchoer
 
IllegalPropertySetDataException - Exception in loci.poi.hpsf
This exception is thrown when there is an illegal value set in a PropertySet.
IllegalPropertySetDataException() - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException
Constructor
IllegalPropertySetDataException(String) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException
Constructor
IllegalPropertySetDataException(Throwable) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException
Constructor
IllegalPropertySetDataException(String, Throwable) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException
Constructor
IllegalVariantTypeException - Exception in loci.poi.hpsf
This exception is thrown if HPSF encounters a variant type that is illegal in the current context.
IllegalVariantTypeException(long, Object, String) - Constructor for exception loci.poi.hpsf.IllegalVariantTypeException
Constructor
IllegalVariantTypeException(long, Object) - Constructor for exception loci.poi.hpsf.IllegalVariantTypeException
Constructor
ILLUMINATION - Static variable in class loci.formats.FormatTools
Identifies the Illumination dimensional type, representing a dimension consisting of illuminations.
IlluminationType - Enum in ome.xml.model.enums
 
IlluminationTypeEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for IlluminationType.
IlluminationTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler
 
ImaconReader - Class in loci.formats.in
ImaconReader is the file format reader for Imacon .fff (TIFF) files.
ImaconReader() - Constructor for class loci.formats.in.ImaconReader
Constructs a new Imacon reader.
image - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The final destination image.
image - Variable in class loci.formats.in.LegacyQTReader
Image containing current frame.
Image - Class in ome.xml.model
 
Image() - Constructor for class ome.xml.model.Image
Default constructor.
Image(Element, OMEModel) - Constructor for class ome.xml.model.Image
Constructs Image recursively from an XML DOM tree.
Image(Image) - Constructor for class ome.xml.model.Image
Copy constructor.
IMAGE_DESCRIPTION - Static variable in class loci.formats.tiff.IFD
 
IMAGE_HEADER_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
JP2 Header boxes
IMAGE_LENGTH - Static variable in class loci.formats.tiff.IFD
 
IMAGE_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
 
IMAGE_SOURCE_DATA - Static variable in class loci.formats.in.PhotoshopTiffReader
 
IMAGE_WIDTH - Static variable in class loci.formats.tiff.IFD
 
imageCount - Variable in class loci.formats.CoreMetadata
Total number of images.
imageDescription - Variable in class loci.formats.in.BaseZeissReader
 
imageFiles - Variable in class loci.formats.in.BaseZeissReader
 
imageHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
imageID - Variable in class loci.ome.io.OMECredentials
 
ImageInputStreamWrapper - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is designed to wrap a ImageInputStream into a InputStream.
ImageInputStreamWrapper(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
Constructs an ImageInputStreamWrapper from the provided ImageInputStream.
ImageIOReader - Class in loci.formats.in
ImageIOReader is the superclass for file format readers that use the javax.imageio package.
ImageIOReader(String, String) - Constructor for class loci.formats.in.ImageIOReader
Constructs a new ImageIOReader.
ImageIOReader(String, String[]) - Constructor for class loci.formats.in.ImageIOReader
Constructs a new ImageIOReader.
ImageIOWriter - Class in loci.formats.out
ImageIOWriter is the superclass for file format writers that use the javax.imageio library.
ImageIOWriter(String, String, String) - Constructor for class loci.formats.out.ImageIOWriter
Constructs an ImageIO-based writer with the given name, default suffix and output type (e.g., png, jpeg).
ImageIOWriter(String, String[], String) - Constructor for class loci.formats.out.ImageIOWriter
Constructs an ImageIO-based writer with the given name, default suffixes and output type (e.g., png, jpeg).
imageIsContiguous(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Returns whether the image has contiguous data across rows.
IMAGEJ_MSG - Static variable in class loci.plugins.util.LibraryChecker
Message to be displayed if ImageJ is too old for LOCI plugins.
IMAGEJ_TAG - Static variable in class loci.formats.in.TiffReader
 
IMAGEJ_VERSION - Static variable in class loci.plugins.util.LibraryChecker
Minimum version of ImageJ necessary for LOCI plugins.
imageLeftPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
ImagePlusReader - Class in loci.plugins.in
A high-level reader for ImagePlus objects.
ImagePlusReader() - Constructor for class loci.plugins.in.ImagePlusReader
Constructs an ImagePlusReader with the default options.
ImagePlusReader(ImportProcess) - Constructor for class loci.plugins.in.ImagePlusReader
Constructs an ImagePlusReader with the given complete import preparation process.
ImageProcessorReader - Class in loci.plugins.util
A low-level reader for ImageProcessor objects.
ImageProcessorReader() - Constructor for class loci.plugins.util.ImageProcessorReader
Constructs an ImageProcessorReader around a new image reader.
ImageProcessorReader(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorReader
Constructs an ImageProcessorReader with the given reader.
ImageProcessorSource - Class in loci.plugins.util
Retrieves ImageJ image processors from an image reader.
ImageProcessorSource(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorSource
 
ImageReader - Class in loci.formats
ImageReader is the master file format reader for all supported formats.
ImageReader() - Constructor for class loci.formats.ImageReader
Constructs a new ImageReader with the default list of reader classes from readers.txt.
ImageReader(ClassList<IFormatReader>) - Constructor for class loci.formats.ImageReader
Constructs a new ImageReader from the given list of reader classes.
ImageRef - Class in ome.xml.model
 
ImageRef() - Constructor for class ome.xml.model.ImageRef
Default constructor.
ImageRef(Element, OMEModel) - Constructor for class ome.xml.model.ImageRef
Constructs ImageRef recursively from an XML DOM tree.
ImageRef(ImageRef) - Constructor for class ome.xml.model.ImageRef
Copy constructor.
imageRX - Variable in class loci.formats.in.SDTInfo
 
imageRY - Variable in class loci.formats.in.SDTInfo
 
images - Variable in class loci.formats.gui.ImageViewer
 
imageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
ImageTester - Class in loci.tests
ImageTester(BufferedImage[][]) - Constructor for class loci.tests.ImageTester
 
ImageTools - Class in loci.formats
A utility class with convenience methods for manipulating images in primitive array form.
imageTopPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
ImageUtil - Class in com.sun.media.imageioimpl.common
 
ImageUtil() - Constructor for class com.sun.media.imageioimpl.common.ImageUtil
 
ImageViewer - Class in loci.formats.gui
ImageViewer is a simple viewer/converter for the Bio-Formats image formats.
ImageViewer() - Constructor for class loci.formats.gui.ImageViewer
Constructs an image viewer.
ImageViewer(boolean) - Constructor for class loci.formats.gui.ImageViewer
Constructs an image viewer.
imageWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
ImageWriter - Class in loci.formats
ImageWriter is the master file format writer for all supported formats.
ImageWriter() - Constructor for class loci.formats.ImageWriter
Constructs a new ImageWriter with the default list of writer classes from writers.txt.
ImageWriter(ClassList<IFormatWriter>) - Constructor for class loci.formats.ImageWriter
Constructs a new ImageWriter from the given list of writer classes.
imageX - Variable in class loci.formats.in.SDTInfo
4 subsequent fields valid only for Camera mode or FIFO_IMAGE mode.
imageY - Variable in class loci.formats.in.SDTInfo
 
ImagicReader - Class in loci.formats.in
ImagicReader is the file format reader for IMAGIC files.
ImagicReader() - Constructor for class loci.formats.in.ImagicReader
Constructs a new IMAGIC reader.
ImagingEnvironment - Class in ome.xml.model
 
ImagingEnvironment() - Constructor for class ome.xml.model.ImagingEnvironment
Default constructor.
ImagingEnvironment(Element, OMEModel) - Constructor for class ome.xml.model.ImagingEnvironment
Constructs ImagingEnvironment recursively from an XML DOM tree.
ImagingEnvironment(ImagingEnvironment) - Constructor for class ome.xml.model.ImagingEnvironment
Copy constructor.
ImarisHDFReader - Class in loci.formats.in
Reader for Bitplane Imaris 5.5 (HDF) files.
ImarisHDFReader() - Constructor for class loci.formats.in.ImarisHDFReader
Constructs a new Imaris HDF reader.
ImarisReader - Class in loci.formats.in
ImarisReader is the file format reader for Bitplane Imaris files.
ImarisReader() - Constructor for class loci.formats.in.ImarisReader
Constructs a new Imaris reader.
ImarisTiffReader - Class in loci.formats.in
ImarisTiffReader is the file format reader for Bitplane Imaris 3 files (TIFF variant).
ImarisTiffReader() - Constructor for class loci.formats.in.ImarisTiffReader
Constructs a new Imaris TIFF reader.
IMB_C - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
IMB_IPR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
IMB_UnkC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
IMB_VERS - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
Image Header Box Fields
IMetadata - Interface in loci.formats.meta
A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.
IMetadataConfigurable - Interface in loci.formats
Source code: Trac, Gitweb
ImgData - Interface in jj2000.j2k.image
This interface defines methods to access image attributes (width, height, number of components, etc.).
ImgDataAdapter - Class in jj2000.j2k.image
This class provides a default implementation of the methods in the 'ImgData' interface.
ImgDataAdapter(ImgData) - Constructor for class jj2000.j2k.image.ImgDataAdapter
Instantiates the ImgDataAdapter object specifying the ImgData source.
ImgDataConverter - Class in jj2000.j2k.image
This class is responsible of all data type conversions.
ImgDataConverter(BlkImgDataSrc, int) - Constructor for class jj2000.j2k.image.ImgDataConverter
Constructs a new ImgDataConverter object that operates on the specified source of image data.
ImgDataConverter(BlkImgDataSrc) - Constructor for class jj2000.j2k.image.ImgDataConverter
Constructs a new ImgDataConverter object that operates on the specified source of image data.
ImgDataJoiner - Class in jj2000.j2k.image
This class implements the ImgData interface and allows to obtain data from different sources.
ImgDataJoiner(BlkImgDataSrc[], int[]) - Constructor for class jj2000.j2k.image.ImgDataJoiner
Class constructor.
imgdatasrc - Variable in class jj2000.j2k.image.ImgDataAdapter
The ImgData source
imgH - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The image width on the hi-res reference grid
ImgReader - Class in jj2000.j2k.image.input
This is the generic interface to be implemented by all image file (or other resource) readers for different image file formats.
ImgReader() - Constructor for class jj2000.j2k.image.input.ImgReader
 
ImgReaderPGM - Class in jj2000.j2k.image.input
This class implements the ImgData interface for reading 8 bit unsigned data from a binary PGM file.
ImgReaderPGM(File) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM
Creates a new PGM file reader from the specified file.
ImgReaderPGM(String) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM
Creates a new PGM file reader from the specified file name.
ImgReaderPGM(RandomAccessFile) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM
Creates a new PGM file reader from the specified RandomAccessFile object.
imgW - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The image width on the hi-res reference grid
IMinMaxStore - Interface in loci.formats.meta
Interface for consumers of minima and maxima pixel intensities across a given wavelength.
Immersion - Enum in ome.xml.model.enums
 
ImmersionEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for Immersion.
ImmersionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ImmersionEnumHandler
 
IMODReader - Class in loci.formats.in
Reader for IMOD binary files.
IMODReader() - Constructor for class loci.formats.in.IMODReader
Constructs a new IMOD reader.
importData(JComponent, Transferable) - Method in class loci.plugins.shortcut.ShortcutTransferHandler
 
Importer - Class in loci.plugins.in
Core logic for the Bio-Formats Importer ImageJ plugin.
Importer(LociImporter) - Constructor for class loci.plugins.in.Importer
 
ImporterDialog - Class in loci.plugins.in
Abstract superclass of importer dialogs.
ImporterDialog(ImportProcess) - Constructor for class loci.plugins.in.ImporterDialog
 
ImporterMetadata - Class in loci.plugins.in
Helper class for storing original metadata key/value pairs.
ImporterMetadata(IFormatReader, ImportProcess, boolean) - Constructor for class loci.plugins.in.ImporterMetadata
 
ImporterOptions - Class in loci.plugins.in
Helper class for managing Bio-Formats Importer options.
ImporterOptions() - Constructor for class loci.plugins.in.ImporterOptions
 
ImporterPrompter - Class in loci.plugins.in
Helper class for presenting the user with dialog boxes for configuring importer options.
ImporterPrompter(ImportProcess) - Constructor for class loci.plugins.in.ImporterPrompter
 
importIds(int[]) - Method in class loci.formats.ome.OmeisImporter
Deprecated.
Attempts to import the given file IDs using Bio-Formats, as a single group.
ImportProcess - Class in loci.plugins.in
Manages the import preparation process.
ImportProcess() - Constructor for class loci.plugins.in.ImportProcess
 
ImportProcess(ImporterOptions) - Constructor for class loci.plugins.in.ImportProcess
 
ImportStep - Enum in loci.plugins.in
An enumeration of the steps in the import preparation process.
IMPROVISION_MAGIC_STRING - Static variable in class loci.formats.in.ImprovisionTiffReader
 
ImprovisionTiffReader - Class in loci.formats.in
ImprovisionTiffReader is the file format reader for Improvision TIFF files.
ImprovisionTiffReader() - Constructor for class loci.formats.in.ImprovisionTiffReader
 
ImspectorReader - Class in loci.formats.in
ImspectorReader is the file format reader for Imspector .msr files.
ImspectorReader() - Constructor for class loci.formats.in.ImspectorReader
Constructs a new Imspector reader.
in - Variable in class loci.formats.FormatReader
Current file.
in - Variable in class loci.formats.gui.ImageViewer
 
in - Variable in class loci.formats.out.TiffWriter
Input stream to use when overwriting data.
in - Variable in class loci.formats.tiff.TiffParser
Input source from which to parse TIFF data.
in - Variable in class loci.formats.tools.AmiraParameters
 
inCache - Variable in class loci.formats.cache.Cache
Whether each position is currently supposed to be cached.
InCell3000Reader - Class in loci.formats.in
InCell3000Reader is the file format reader for InCell 3000.
InCell3000Reader() - Constructor for class loci.formats.in.InCell3000Reader
Constructs a new InCell 3000 reader.
INCELL_MAGIC_STRING - Static variable in class loci.formats.in.InCellReader
 
InCellReader - Class in loci.formats.in
InCellReader is the file format reader for InCell 1000/2000 datasets.
InCellReader() - Constructor for class loci.formats.in.InCellReader
Constructs a new InCell 1000/2000 reader.
incr - Variable in class loci.formats.in.SDTInfo
 
incrementShapeCount() - Method in class loci.poi.ddf.EscherDgRecord
 
incrementShapeId() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster
 
indentXML(String) - Static method in class loci.common.xml.XMLTools
Indents XML to be more readable.
indentXML(String, int) - Static method in class loci.common.xml.XMLTools
Indents XML by the given spacing to be more readable.
indentXML(String, boolean) - Static method in class loci.common.xml.XMLTools
Indents XML to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.
indentXML(String, int, boolean) - Static method in class loci.common.xml.XMLTools
Indents XML by the given spacing to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.
indentXML(String) - Static method in class ome.scifio.xml.XMLTools
Indents XML to be more readable.
indentXML(String, int) - Static method in class ome.scifio.xml.XMLTools
Indents XML by the given spacing to be more readable.
indentXML(String, boolean) - Static method in class ome.scifio.xml.XMLTools
Indents XML to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.
indentXML(String, int, boolean) - Static method in class ome.scifio.xml.XMLTools
Indents XML by the given spacing to be more readable, avoiding any whitespace injection into CDATA if the preserveCData flag is set.
index - Variable in class loci.formats.cache.CacheEvent
Relevant index to the event, if any.
index - Variable in class loci.plugins.util.SearchableWindow
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.AQUA
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BLACK
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BROWN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.CORAL
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GOLD
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.INDIGO
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIME
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.MAROON
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.ORANGE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.ORCHID
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.PINK
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.RED
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.ROSE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.TAN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.WHITE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW
 
Index16ColorModel - Class in loci.formats.gui
ColorModel that handles 16 bits per channel lookup tables.
Index16ColorModel(int, int, short[][], boolean) - Constructor for class loci.formats.gui.Index16ColorModel
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.PINK
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW
 
INDEX_EXTERNAL - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
index_start - Variable in class mdbtools.libmdb.MdbTableDef
 
indexed - Variable in class loci.formats.CoreMetadata
Indicates whether or not the images are stored as indexed color.
indexedAsRGB - Variable in class loci.formats.FormatReader
Whether or not MetadataStore sets C = 3 for indexed color images.
indexedToRGB(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools
Converts an indexed color BufferedImage to an RGB BufferedImage.
indexedToRGB(byte[][], byte[]) - Static method in class loci.formats.ImageTools
Converts a LUT and an array of indices into an array of RGB tuples.
indexedToRGB(short[][], byte[], boolean) - Static method in class loci.formats.ImageTools
Converts a LUT and an array of indices into an array of RGB tuples.
indexOf(int[], int) - Static method in class loci.common.DataTools
Returns the index of the first occurrence of the given value in the given array.
indexOf(Object[], Object) - Static method in class loci.common.DataTools
Returns the index of the first occurrence of the given value in the given Object array.
indexOf(Object) - Method in class loci.common.IniList
 
indexOf(double) - Method in class loci.poi.util.DoubleList
Returns the index in this list of the first occurrence of the specified element, or -1 if this list does not contain this element.
indexOf(int) - Method in class loci.poi.util.IntList
Returns the index in this list of the first occurrence of the specified element, or -1 if this list does not contain this element.
indexOf(short) - Method in class loci.poi.util.ShortList
Returns the index in this list of the first occurrence of the specified element, or -1 if this list does not contain this element.
indexOf(int[], int) - Static method in class ome.scifio.common.DataTools
Returns the index of the first occurrence of the given value in the given array.
indexOf(Object[], Object) - Static method in class ome.scifio.common.DataTools
Returns the index of the first occurrence of the given value in the given Object array.
IndexRecord - Class in loci.poi.hssf.record
Title: Index Record
IndexRecord() - Constructor for class loci.poi.hssf.record.IndexRecord
 
IndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.IndexRecord
Constructs an Index record and sets its fields appropriately.
INDIVIDUAL_JARS - Static variable in class loci.formats.UpgradeChecker
Names of the individual JARs.
INFO - Static variable in interface jj2000.j2k.util.MsgLogger
Severity of message.
info - Variable in class loci.formats.in.OMETiffReader
Mapping from series and plane numbers to files and IFD entries.
info - Variable in class loci.formats.in.SDTInfo
 
info - Variable in class loci.formats.in.SDTReader
Object containing SDT header information.
info - Variable in class loci.plugins.prefs.Option
Documentation about the option, in HTML.
INFO - Static variable in class loci.poi.util.POILogger
 
INFO_DEFAULT - Static variable in class loci.plugins.in.MainDialog
Initial message to display in help text box.
INFO_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
INFO_TABLE - Static variable in class loci.formats.in.LiFlimReader
 
infoLength - Variable in class loci.formats.in.SDTInfo
Length of the info part.
infoOffs - Variable in class loci.formats.in.SDTInfo
Offset of the info part which contains general text information (Title, date, time, contents etc.).
infoPane - Variable in class loci.plugins.in.MainDialog
 
infoTable - Variable in class loci.plugins.in.MainDialog
 
INI_DEFAULT - Static variable in class loci.plugins.prefs.Option
INI key indicating option's default value.
INI_INFO - Static variable in class loci.plugins.prefs.Option
INI key indicating option's info.
INI_KEY - Static variable in class loci.plugins.prefs.Option
INI key indicating option's key.
INI_LABEL - Static variable in class loci.plugins.prefs.Option
INI key indicating option's label.
INI_POSSIBLE - Static variable in class loci.plugins.prefs.StringOption
INI key indicating option's possible values.
INI_SAVE - Static variable in class loci.plugins.prefs.Option
INI key indicating whether option should be saved to prefs file.
INI_TYPE - Static variable in class loci.plugins.prefs.OptionsList
INI key indicating option's type.
IniList - Class in loci.common
A legacy delegator class for ome.scifio.common.IniList.
IniList() - Constructor for class loci.common.IniList
 
IniList - Class in ome.scifio.common
A data structure containing a parsed list of INI key/value tables.
IniList() - Constructor for class ome.scifio.common.IniList
 
IniParser - Class in loci.common
A legacy delegator class for ome.scifio.common.IniParser.
IniParser() - Constructor for class loci.common.IniParser
 
IniParser - Class in ome.scifio.common
A simple parser for INI configuration files.
IniParser() - Constructor for class ome.scifio.common.IniParser
 
init(String) - Method in class loci.tests.testng.FileHandleTest
 
init(String, String) - Method in class loci.tests.testng.OpenBytesPerformanceTest
 
init(String) - Method in class loci.tests.testng.SubResolutionTest
 
INIT_EL_COPYING - Static variable in class jj2000.j2k.util.ArrayUtil
The number of elements to copy initially in an optimized array copy
IniTable - Class in loci.common
A legacy delegator class for ome.scifio.common.IniTable.
IniTable() - Constructor for class loci.common.IniTable
 
IniTable - Class in ome.scifio.common
A data structure containing a parsed list of INI key/value tables.
IniTable() - Constructor for class ome.scifio.common.IniTable
 
initBitBuf() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Initialize bit buffer machinery.
initChilds() - Method in class jj2000.j2k.wavelet.Subband
Initializes the childs of this node with the correct values.
initClass() - Method in class loci.formats.gui.LegacyQTTools
Initializes the class.
initCoreMetadata(int) - Method in class loci.formats.in.LeicaSCNReader
 
initExtraMetadata() - Method in class loci.formats.in.DeltavisionReader
 
initFile(String) - Method in class loci.formats.FileStitcher
Initializes the given file or file pattern.
initFile(String) - Method in class loci.formats.FormatReader
Initializes the given file (parsing header information, etc.).
initFile(String) - Method in class loci.formats.in.AFIReader
 
initFile(String) - Method in class loci.formats.in.AIMReader
 
initFile(String) - Method in class loci.formats.in.AliconaReader
 
initFile(String) - Method in class loci.formats.in.AmiraReader
 
initFile(String) - Method in class loci.formats.in.AnalyzeReader
 
initFile(String) - Method in class loci.formats.in.APLReader
 
initFile(String) - Method in class loci.formats.in.APNGReader
 
initFile(String) - Method in class loci.formats.in.ARFReader
 
initFile(String) - Method in class loci.formats.in.AVIReader
 
initFile(String) - Method in class loci.formats.in.BaseTiffReader
 
initFile(String) - Method in class loci.formats.in.BDReader
 
initFile(String) - Method in class loci.formats.in.BioRadGelReader
 
initFile(String) - Method in class loci.formats.in.BioRadReader
 
initFile(String) - Method in class loci.formats.in.BioRadSCNReader
 
initFile(String) - Method in class loci.formats.in.BMPReader
 
initFile(String) - Method in class loci.formats.in.BrukerReader
 
initFile(String) - Method in class loci.formats.in.BurleighReader
 
initFile(String) - Method in class loci.formats.in.CanonRawReader
 
initFile(String) - Method in class loci.formats.in.CellomicsReader
 
initFile(String) - Method in class loci.formats.in.CellSensReader
 
initFile(String) - Method in class loci.formats.in.CellVoyagerReader
 
initFile(String) - Method in class loci.formats.in.CellWorxReader
 
initFile(String) - Method in class loci.formats.in.DeltavisionReader
 
initFile(String) - Method in class loci.formats.in.DicomReader
 
initFile(String) - Method in class loci.formats.in.DNGReader
 
initFile(String) - Method in class loci.formats.in.Ecat7Reader
 
initFile(String) - Method in class loci.formats.in.EPSReader
 
initFile(String) - Method in class loci.formats.in.FakeReader
 
initFile(String) - Method in class loci.formats.in.FEIReader
 
initFile(String) - Method in class loci.formats.in.FitsReader
 
initFile(String) - Method in class loci.formats.in.FlexReader
 
initFile(String) - Method in class loci.formats.in.FujiReader
 
initFile(String) - Method in class loci.formats.in.FV1000Reader
 
initFile(String) - Method in class loci.formats.in.GatanDM2Reader
 
initFile(String) - Method in class loci.formats.in.GatanReader
 
initFile(String) - Method in class loci.formats.in.GIFReader
 
initFile(String) - Method in class loci.formats.in.HamamatsuVMSReader
 
initFile(String) - Method in class loci.formats.in.HISReader
 
initFile(String) - Method in class loci.formats.in.HitachiReader
 
initFile(String) - Method in class loci.formats.in.HRDGDFReader
 
initFile(String) - Method in class loci.formats.in.ICSReader
 
initFile(String) - Method in class loci.formats.in.ImageIOReader
 
initFile(String) - Method in class loci.formats.in.ImagicReader
 
initFile(String) - Method in class loci.formats.in.ImarisHDFReader
 
initFile(String) - Method in class loci.formats.in.ImarisReader
 
initFile(String) - Method in class loci.formats.in.ImarisTiffReader
 
initFile(String) - Method in class loci.formats.in.IMODReader
 
initFile(String) - Method in class loci.formats.in.ImspectorReader
 
initFile(String) - Method in class loci.formats.in.InCell3000Reader
 
initFile(String) - Method in class loci.formats.in.InCellReader
 
initFile(String) - Method in class loci.formats.in.INRReader
 
initFile(String) - Method in class loci.formats.in.InveonReader
 
initFile(String) - Method in class loci.formats.in.IPLabReader
 
initFile(String) - Method in class loci.formats.in.IPWReader
 
initFile(String) - Method in class loci.formats.in.IvisionReader
 
initFile(String) - Method in class loci.formats.in.JEOLReader
 
initFile(String) - Method in class loci.formats.in.JPEG2000Reader
 
initFile(String) - Method in class loci.formats.in.JPXReader
 
initFile(String) - Method in class loci.formats.in.KhorosReader
 
initFile(String) - Method in class loci.formats.in.KodakReader
 
initFile(String) - Method in class loci.formats.in.L2DReader
 
initFile(String) - Method in class loci.formats.in.LegacyND2Reader
 
initFile(String) - Method in class loci.formats.in.LegacyQTReader
 
initFile(String) - Method in class loci.formats.in.LeicaReader
 
initFile(String) - Method in class loci.formats.in.LiFlimReader
 
initFile(String) - Method in class loci.formats.in.LIFReader
 
initFile(String) - Method in class loci.formats.in.LIMReader
 
initFile(String) - Method in class loci.formats.in.MetamorphReader
 
initFile(String) - Method in class loci.formats.in.MetamorphTiffReader
 
initFile(String) - Method in class loci.formats.in.MIASReader
 
initFile(String) - Method in class loci.formats.in.MicromanagerReader
 
initFile(String) - Method in class loci.formats.in.MINCReader
 
initFile(String) - Method in class loci.formats.in.MinimalTiffReader
 
initFile(String) - Method in class loci.formats.in.MNGReader
 
initFile(String) - Method in class loci.formats.in.MolecularImagingReader
 
initFile(String) - Method in class loci.formats.in.MRCReader
 
initFile(String) - Method in class loci.formats.in.MRWReader
 
initFile(String) - Method in class loci.formats.in.NAFReader
 
initFile(String) - Method in class loci.formats.in.NativeND2Reader
 
initFile(String) - Method in class loci.formats.in.NativeQTReader
 
initFile(String) - Method in class loci.formats.in.NDPIReader
 
initFile(String) - Method in class loci.formats.in.NDPISReader
 
initFile(String) - Method in class loci.formats.in.NiftiReader
 
initFile(String) - Method in class loci.formats.in.NikonReader
 
initFile(String) - Method in class loci.formats.in.NRRDReader
 
initFile(String) - Method in class loci.formats.in.OBFReader
 
initFile(String) - Method in class loci.formats.in.OMETiffReader
 
initFile(String) - Method in class loci.formats.in.OMEXMLReader
 
initFile(String) - Method in class loci.formats.in.OpenlabRawReader
 
initFile(String) - Method in class loci.formats.in.OpenlabReader
 
initFile(String) - Method in class loci.formats.in.OperettaReader
 
initFile(String) - Method in class loci.formats.in.OxfordInstrumentsReader
 
initFile(String) - Method in class loci.formats.in.PCIReader
 
initFile(String) - Method in class loci.formats.in.PCORAWReader
 
initFile(String) - Method in class loci.formats.in.PCXReader
 
initFile(String) - Method in class loci.formats.in.PDSReader
 
initFile(String) - Method in class loci.formats.in.PerkinElmerReader
 
initFile(String) - Method in class loci.formats.in.PGMReader
 
initFile(String) - Method in class loci.formats.in.PhotoshopTiffReader
 
initFile(String) - Method in class loci.formats.in.PictReader
 
initFile(String) - Method in class loci.formats.in.PovrayReader
 
initFile(String) - Method in class loci.formats.in.PrairieReader
 
initFile(String) - Method in class loci.formats.in.PSDReader
 
initFile(String) - Method in class loci.formats.in.QuesantReader
 
initFile(String) - Method in class loci.formats.in.RHKReader
 
initFile(String) - Method in class loci.formats.in.SBIGReader
 
initFile(String) - Method in class loci.formats.in.ScanrReader
 
initFile(String) - Method in class loci.formats.in.ScreenReader
 
initFile(String) - Method in class loci.formats.in.SDTReader
 
initFile(String) - Method in class loci.formats.in.SeikoReader
 
initFile(String) - Method in class loci.formats.in.SIFReader
 
initFile(String) - Method in class loci.formats.in.SlidebookReader
 
initFile(String) - Method in class loci.formats.in.SMCameraReader
 
initFile(String) - Method in class loci.formats.in.SpiderReader
 
initFile(String) - Method in class loci.formats.in.TargaReader
 
initFile(String) - Method in class loci.formats.in.TCSReader
 
initFile(String) - Method in class loci.formats.in.TextReader
 
initFile(String) - Method in class loci.formats.in.TiffJAIReader
 
initFile(String) - Method in class loci.formats.in.TileJPEGReader
 
initFile(String) - Method in class loci.formats.in.TillVisionReader
 
initFile(String) - Method in class loci.formats.in.TopometrixReader
 
initFile(String) - Method in class loci.formats.in.TrestleReader
 
initFile(String) - Method in class loci.formats.in.UBMReader
 
initFile(String) - Method in class loci.formats.in.UnisokuReader
 
initFile(String) - Method in class loci.formats.in.VarianFDFReader
 
initFile(String) - Method in class loci.formats.in.VGSAMReader
 
initFile(String) - Method in class loci.formats.in.VisitechReader
 
initFile(String) - Method in class loci.formats.in.VolocityClippingReader
 
initFile(String) - Method in class loci.formats.in.VolocityReader
 
initFile(String) - Method in class loci.formats.in.WATOPReader
 
initFile(String) - Method in class loci.formats.in.WlzReader
 
initFile(String) - Method in class loci.formats.in.ZeissCZIReader
 
initFile(String) - Method in class loci.formats.in.ZeissLSMReader
 
initFile(String) - Method in class loci.formats.in.ZeissTIFFReader
 
initFile(String) - Method in class loci.formats.in.ZeissZVIReader
 
initFile(String) - Method in class loci.formats.in.ZipReader
 
initFile(String) - Method in class loci.ome.io.OMEReader
 
initFile(String) - Method in class loci.ome.io.OmeroReader
 
initFileMain(String) - Method in class loci.formats.in.BaseZeissReader
 
INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFRow
 
INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFSheet
Used for compile-time optimization.
INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook
used for compile-time performance/memory optimization.
INITIAL_LENGTH - Static variable in class ome.scifio.io.ByteArrayHandle
Initial length of a new file.
initialiseCRC() - Method in class loci.common.CRC
 
initialiseCRC() - Method in class ome.scifio.common.CRC
 
initialize(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
initialize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
Initializes the layers array.
initialize() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
Initializes the rate allocation points, taking into account header overhead and such.
initialize(String, int) - Method in class loci.formats.codec.JPEGTileDecoder
 
initialize(RandomAccessInputStream, int) - Method in class loci.formats.codec.JPEGTileDecoder
 
initialize(RandomAccessInputStream, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder
 
initialize(RandomAccessInputStream, int, int) - Method in interface loci.formats.services.JPEGTurboService
 
initialize(RandomAccessInputStream, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl
 
initialize(InputStream) - Method in interface loci.formats.services.LuraWaveService
initialize(InputStream) - Method in class loci.formats.services.LuraWaveServiceImpl
 
initialize(String) - Method in interface loci.formats.services.MDBService
Prepare the given .mdb file for reading.
initialize(String) - Method in class loci.formats.services.MDBServiceImpl
 
initialize(String) - Method in interface loci.formats.services.MetakitService
 
initialize(RandomAccessInputStream) - Method in interface loci.formats.services.MetakitService
 
initialize(String) - Method in class loci.formats.services.MetakitServiceImpl
 
initialize(RandomAccessInputStream) - Method in class loci.formats.services.MetakitServiceImpl
 
initialize(String) - Method in interface loci.formats.services.POIService
Construct a new POI filesystem around the given file.
initialize(RandomAccessInputStream) - Method in interface loci.formats.services.POIService
Construct a new POI filesystem around the given stream.
initialize(String) - Method in class loci.formats.services.POIServiceImpl
 
initialize(RandomAccessInputStream) - Method in class loci.formats.services.POIServiceImpl
 
initialize(String) - Method in class loci.poi.util.CommonsLogger
 
initialize(String) - Method in class loci.poi.util.NullLogger
 
initialize(String) - Method in class loci.poi.util.POILogger
 
initialize(String) - Method in class loci.poi.util.SystemOutLogger
 
initialized - Variable in class loci.formats.FormatWriter
Whether each plane in each series of the current file has been prepped for writing.
initialized - Variable in class loci.formats.gui.LegacyQTTools
Flag indicating this class has been initialized.
initializeFromStream(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
Initialize the string table.
initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
Initialize the string table.
initImage() - Method in class loci.formats.in.ImageIOReader
 
initJPEGWriter(boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
Initializes the JPEGWriter and JPEGParam instance variables.
initLicenseCode() - Static method in class loci.plugins.util.LuraWave
Reads LuraWave license code from ImageJ preferences, if available.
initMetadata() - Method in class loci.formats.in.BaseTiffReader
Populates the metadata hashtable and metadata store.
initMetadata() - Method in class loci.formats.in.GelReader
 
initMetadata(int) - Method in class loci.formats.in.ZeissLSMReader
 
initMetadataStore() - Method in class loci.formats.in.BaseTiffReader
Populates the metadata store using the data parsed in BaseTiffReader.initStandardMetadata() along with some further parsing done in the method itself.
initMetadataStore() - Method in class loci.formats.in.FEITiffReader
 
initMetadataStore() - Method in class loci.formats.in.FluoviewReader
 
initMetadataStore() - Method in class loci.formats.in.ImaconReader
 
initMetadataStore() - Method in class loci.formats.in.ImprovisionTiffReader
 
initMetadataStore() - Method in class loci.formats.in.JPKReader
 
initMetadataStore() - Method in class loci.formats.in.LeicaSCNReader
 
initMetadataStore() - Method in class loci.formats.in.LEOReader
 
initMetadataStore() - Method in class loci.formats.in.NDPIReader
 
initMetadataStore() - Method in class loci.formats.in.NikonElementsTiffReader
 
initMetadataStore() - Method in class loci.formats.in.NikonTiffReader
 
initMetadataStore() - Method in class loci.formats.in.PyramidTiffReader
 
initMetadataStore() - Method in class loci.formats.in.SimplePCITiffReader
 
initMetadataStore() - Method in class loci.formats.in.SISReader
 
initMetadataStore() - Method in class loci.formats.in.SlidebookTiffReader
 
initMetadataStore() - Method in class loci.formats.in.SVSReader
 
initMetadataStore() - Method in class loci.formats.in.TiffReader
 
initMetadataStore() - Method in class loci.formats.in.TrestleReader
 
initMinMax() - Method in class loci.formats.MinMaxCalculator
Ensures internal min/max variables are initialized properly.
initPixels() - Method in class loci.formats.in.DeltavisionReader
 
initProgressWatch(int, int, String) - Method in interface jj2000.j2k.util.ProgressWatch
Initialize the progress watching process
initReader(int, int) - Method in class loci.formats.FileStitcher
 
initStandardMetadata() - Method in class loci.formats.in.BaseTiffReader
Parses standard metadata.
initStandardMetadata() - Method in class loci.formats.in.DNGReader
 
initStandardMetadata() - Method in class loci.formats.in.FEITiffReader
 
initStandardMetadata() - Method in class loci.formats.in.FluoviewReader
 
initStandardMetadata() - Method in class loci.formats.in.ImaconReader
 
initStandardMetadata() - Method in class loci.formats.in.ImprovisionTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.JPKReader
 
initStandardMetadata() - Method in class loci.formats.in.LeicaSCNReader
 
initStandardMetadata() - Method in class loci.formats.in.LEOReader
 
initStandardMetadata() - Method in class loci.formats.in.MetamorphReader
 
initStandardMetadata() - Method in class loci.formats.in.NDPIReader
 
initStandardMetadata() - Method in class loci.formats.in.NikonElementsTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.NikonReader
 
initStandardMetadata() - Method in class loci.formats.in.NikonTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.PyramidTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.SEQReader
 
initStandardMetadata() - Method in class loci.formats.in.SimplePCITiffReader
 
initStandardMetadata() - Method in class loci.formats.in.SISReader
 
initStandardMetadata() - Method in class loci.formats.in.SlidebookTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.SVSReader
 
initStandardMetadata() - Method in class loci.formats.in.TiffReader
 
initStandardMetadata() - Method in class loci.formats.in.TrestleReader
 
initSubbandsFields(int, SubbandSyn) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
Initialises subbands fields, such as code-blocks dimension and number of magnitude bits, in the subband tree.
initTileComp(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
Load options, length calculation type and termination type for each tile-component.
initVars(String) - Method in class loci.formats.in.BaseZeissReader
 
initVars(String) - Method in class loci.formats.in.ZeissTIFFReader
 
initVars(String) - Method in class loci.formats.in.ZeissZVIReader
 
IniWriter - Class in loci.common
A legacy delegator class for ome.scifio.common.IniWriter.
IniWriter() - Constructor for class loci.common.IniWriter
 
IniWriter - Class in ome.scifio.common
A simple writer for INI configuration files.
IniWriter() - Constructor for class ome.scifio.common.IniWriter
 
INK_NAMES - Static variable in class loci.formats.tiff.IFD
 
INK_SET - Static variable in class loci.formats.tiff.IFD
 
INK_SET_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "InkSet" tag.
INK_SET_NOT_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "InkSet" tag.
INNER - Static variable in class mdbtools.dbengine.sql.Join
 
inputOrder - Variable in class loci.formats.SwappableMetadata
Order in which dimensions are stored.
InputStreamAdapter - Class in com.sun.media.imageioimpl.plugins.clib
 
InputStreamAdapter(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
 
INRReader - Class in loci.formats.in
INRReader is the file format reader for INR files.
INRReader() - Constructor for class loci.formats.in.INRReader
Constructs a new INR reader.
insert(ImageProcessor, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
insertBefore(Node, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
insertCell(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
insertChartRecord() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
Test only.
insertChartRecords(List) - Method in class loci.poi.hssf.usermodel.HSSFSheet
 
insertColumn(ColumnInfoRecord) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
Inserts a column into the aggregate (at the end of the list).
insertColumn(int, ColumnInfoRecord) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
Inserts a column into the aggregate (at the position specified by idx.
insertNode(PaletteBuilder.ColorNode, Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
insertRow(RowRecord) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
insertSST() - Method in class loci.poi.hssf.model.Workbook
use this function to add a Shared String Table to an existing sheet (say generated by a different java api) without an sst....
insertUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets
 
inspectViewable(Object, boolean, int, String) - Static method in class loci.poi.poifs.dev.POIFSViewEngine
Inspect an object that may be viewable, and drill down if told to
install(String, String) - Method in class loci.formats.UpgradeChecker
Download and install a JAR file from the given URL.
install(String) - Static method in class loci.plugins.Updater
Install the tools bundle which can be retrieved from the specified path.
installIndividualJars(String, String) - Method in class loci.formats.UpgradeChecker
Download and install all of the individual JAR files into the given directory.
InstallWizard - Class in loci.plugins.config
A wizard for walking users through installation of third party libraries and plugins used by the LOCI plugins.
InstallWizard() - Constructor for class loci.plugins.config.InstallWizard
 
Instrument - Class in ome.xml.model
 
Instrument() - Constructor for class ome.xml.model.Instrument
Default constructor.
Instrument(Element, OMEModel) - Constructor for class ome.xml.model.Instrument
Constructs Instrument recursively from an XML DOM tree.
Instrument(Instrument) - Constructor for class ome.xml.model.Instrument
Copy constructor.
InstrumentRef - Class in ome.xml.model
 
InstrumentRef() - Constructor for class ome.xml.model.InstrumentRef
Default constructor.
InstrumentRef(Element, OMEModel) - Constructor for class ome.xml.model.InstrumentRef
Constructs InstrumentRef recursively from an XML DOM tree.
InstrumentRef(InstrumentRef) - Constructor for class ome.xml.model.InstrumentRef
Copy constructor.
INT16 - Static variable in class loci.formats.FormatTools
Identifies the INT16 data type used to store pixel values.
INT32 - Static variable in class loci.formats.FormatTools
Identifies the INT32 data type used to store pixel values.
INT8 - Static variable in class loci.formats.FormatTools
Identifies the INT8 data type used to store pixel values.
INT_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
 
intArraySet(int[], int) - Static method in class jj2000.j2k.util.ArrayUtil
Reinitializes an int array to the given value in an optimized way.
IntegerField - Class in loci.poi.util
representation of an integer (32-bit) field at a fixed location within a byte array
IntegerField(int) - Constructor for class loci.poi.util.IntegerField
construct the IntegerField with its offset into its containing byte array
IntegerField(int, int) - Constructor for class loci.poi.util.IntegerField
construct the IntegerField with its offset into its containing byte array and initialize its value
IntegerField(int, byte[]) - Constructor for class loci.poi.util.IntegerField
Construct the IntegerField with its offset into its containing byte array and initialize its value from its byte array
IntegerField(int, int, byte[]) - Constructor for class loci.poi.util.IntegerField
construct the IntegerField with its offset into its containing byte array, initialize its value, and write the value to a byte array
IntegerSpec - Class in jj2000.j2k
This class extends ModuleSpec and is responsible of Integer specifications for each tile-component.
IntegerSpec(int, int, byte) - Constructor for class jj2000.j2k.IntegerSpec
Constructs a new 'IntegerSpec' for the specified number of tiles and components and with allowed type of specifications.
IntegerSpec(int, int, byte, J2KImageWriteParamJava, String, String) - Constructor for class jj2000.j2k.IntegerSpec
Constructs a new 'IntegerSpec' for the specified number of tiles and components, the allowed specifications type instance.
INTELLECTUAL_PROPERTY_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
intensity - Variable in class loci.formats.in.SDTReader
Whether to combine lifetime bins into single intensity image planes.
intent - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
intercept(List<IMethodInstance>, ITestContext) - Method in class loci.tests.testng.OrderingListener
 
InterfaceEndRecord - Class in loci.poi.hssf.record
Title: Interface End Record
InterfaceEndRecord() - Constructor for class loci.poi.hssf.record.InterfaceEndRecord
 
InterfaceEndRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.InterfaceEndRecord
Constructs an InterfaceEnd record and sets its fields appropriately.
InterfaceHdrRecord - Class in loci.poi.hssf.record
Title: Interface Header Record
InterfaceHdrRecord() - Constructor for class loci.poi.hssf.record.InterfaceHdrRecord
 
InterfaceHdrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.InterfaceHdrRecord
Constructs an Codepage record and sets its fields appropriately.
interlaced - Variable in class loci.formats.codec.MJPBCodecOptions
Indicates whether or not channels are interlaced.
interlaceFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
interleaved - Variable in class loci.formats.codec.CodecOptions
Indicates whether or not channels are interleaved.
interleaved - Variable in class loci.formats.CoreMetadata
True if channels are stored RGBRGBRGB...; false if channels are stored RRR...GGG...BBB...
interleaved - Variable in class loci.formats.FormatWriter
Whether the channels in an RGB image are interleaved.
INTEROPERABILITY_INDEX_R98 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
A value to be used with the "InteroperabilityIndex" tag.
INTEROPERABILITY_INDEX_THM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
A value to be used with the "InteroperabilityIndex" tag.
interpolate(short[], byte[], int[], int, int, boolean) - Static method in class loci.formats.ImageTools
 
intersection(Region) - Method in class loci.common.Region
 
intersection(Region) - Method in class ome.scifio.common.Region
Returns a Region representing the intersection of this Region with the given Region.
IntersectionPtg - Class in loci.poi.hssf.record.formula
 
IntersectionPtg() - Constructor for class loci.poi.hssf.record.formula.IntersectionPtg
 
IntersectionPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.IntersectionPtg
 
intersects(Region) - Method in class ome.scifio.common.Region
Returns true if this region intersects the given region.
intFormat(int, int) - Static method in class loci.formats.in.MetamorphReader
Formats an integer value with leading 0s if needed.
intFormatMax(int, int) - Static method in class loci.formats.in.MetamorphReader
Formats an integer with leading 0 using maximum sequence number.
IntList - Class in loci.poi.util
A List of int's; as full an implementation of the java.util.List interface as possible, with an eye toward minimal creation of objects the mimicry of List is as follows: if possible, operations designated 'optional' in the List interface are attempted wherever the List interface refers to an Object, substitute int wherever the List interface refers to a Collection or List, substitute IntList the mimicry is not perfect, however: operations involving Iterators or ListIterators are not supported remove(Object) becomes removeValue to distinguish it from remove(int index) subList is not supported
IntList() - Constructor for class loci.poi.util.IntList
create an IntList of default size
IntList(int) - Constructor for class loci.poi.util.IntList
 
IntList(IntList) - Constructor for class loci.poi.util.IntList
create a copy of an existing IntList
IntList(int, int) - Constructor for class loci.poi.util.IntList
create an IntList with a predefined initial size
IntList2d - Class in loci.poi.util
Provides an interface for interacting with 2d arrays of integers.
IntList2d() - Constructor for class loci.poi.util.IntList2d
 
IntMapper - Class in loci.poi.util
A List of objects that are indexed AND keyed by an int; also allows for getting the index of a value in the list
IntMapper() - Constructor for class loci.poi.util.IntMapper
create an IntMapper of default size
IntMapper(int) - Constructor for class loci.poi.util.IntMapper
 
IntPtg - Class in loci.poi.hssf.record.formula
Integer (short intger) Stores a (java) short value in a formula
IntPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.IntPtg
 
IntPtg(String) - Constructor for class loci.poi.hssf.record.formula.IntPtg
 
intsToBytes(int[], boolean) - Static method in class loci.common.DataTools
Translates an array of int values into an array of byte values.
intsToBytes(int[], boolean) - Static method in class ome.scifio.common.DataTools
Translates an array of int values into an array of byte values.
intToBytes(int, boolean) - Static method in class loci.common.DataTools
Translates the int value into an array of four bytes.
intToBytes(int, boolean) - Static method in class ome.scifio.common.DataTools
Translates the int value into an array of four bytes.
intValue() - Method in class loci.formats.tiff.TiffRational
Returns the value of the specified number as an int.
INV_ICT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
Identifier for the Inverse Irreversible Component Transformation (INV_ICT).
INV_RCT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
Identifier for the Inverse Reversible Component Transformation (INV_RCT).
INVALID_LICENSE_MSG - Static variable in class loci.formats.services.LuraWaveServiceImpl
Message to display if an invalid LuraWave license code is given.
invalidateCache() - Static method in class loci.common.CaseInsensitiveLocation
Remove (invalidate) cached content all directories.
invalidateCache(File) - Static method in class loci.common.CaseInsensitiveLocation
Remove (invalidate) cached content for the specified directory.
invalidateCache() - Static method in class ome.scifio.io.CaseInsensitiveLocation
Remove (invalidate) cached content all directories.
invalidateCache(File) - Static method in class ome.scifio.io.CaseInsensitiveLocation
Remove (invalidate) cached content for the specified directory.
InvCompTransf - Class in jj2000.j2k.image.invcomptransf
This class apply inverse component transformations to the tiles depending on specification read from the codestream header.
InvCompTransf(BlkImgDataSrc, DecoderSpecs, int[]) - Constructor for class jj2000.j2k.image.invcomptransf.InvCompTransf
Constructs a new ForwCompTransf object that operates on the specified source of image data.
InveonReader - Class in loci.formats.in
InveonReader is the file format reader for Inveon files.
InveonReader() - Constructor for class loci.formats.in.InveonReader
Constructs a new Inveon reader.
inverseFill - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Whether bits are inserted in reverse order (TIFF FillOrder 2).
InverseWT - Class in jj2000.j2k.wavelet.synthesis
This abstract class extends the WaveletTransform one with the specifics of inverse wavelet transforms.
InverseWT(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InverseWT
Initializes this object with the given source of wavelet coefficients.
invert() - Method in class loci.plugins.util.RecordedImageProcessor
 
InvertedCMYKColorSpace - Class in com.sun.media.imageioimpl.common
Singleton class representing a simple, mathematically defined inverted CMYK color space.
invertLut() - Method in class loci.plugins.util.RecordedImageProcessor
 
invokeProtected(Object, String, Class<?>[], Object[]) - Method in class loci.utils.ProtectedMethodInvoker
This method attempts to invoke the provided methodName within the source object.
InvWT - Interface in jj2000.j2k.wavelet.synthesis
This interface extends the WaveletTransform with the specifics of inverse wavelet transforms.
InvWTAdapter - Class in jj2000.j2k.wavelet.synthesis
This class provides default implementation of the methods in the 'InvWT' interface.
InvWTAdapter(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTAdapter
Instantiates the 'InvWTAdapter' object using the specified 'MultiResImgData' source.
InvWTData - Interface in jj2000.j2k.wavelet.synthesis
This interface extends the MultiResImgData interface with the methods that are necessary for inverse wavelet data (i.e.
InvWTFull - Class in jj2000.j2k.wavelet.synthesis
This class implements the InverseWT with the full-page approach for int and float data.
InvWTFull(CBlkWTDataSrcDec, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTFull
Initializes this object with the given source of wavelet coefficients.
IOTester - Class in loci.tests
A class for testing RandomAccessInputStream's efficiency in various cases.
IOTester() - Constructor for class loci.tests.IOTester
 
IOUtils - Class in loci.poi.util
 
IPLabReader - Class in loci.formats.in
IPLabReader is the file format reader for IPLab (.IPL) files.
IPLabReader() - Constructor for class loci.formats.in.IPLabReader
Constructs a new IPLab reader.
IPW_MAGIC_BYTES - Static variable in class loci.formats.in.IPWReader
 
IPWReader - Class in loci.formats.in
IPWReader is the file format reader for Image-Pro Workspace (IPW) files.
IPWReader() - Constructor for class loci.formats.in.IPWReader
Constructs a new IPW reader.
IRandomAccess - Interface in loci.common
Legacy extension of ome.scifio.io.IRandomAccess.
IRandomAccess - Interface in ome.scifio.io
Interface for random access into structures (e.g., files or arrays).
IRandomAccessAdapter - Class in loci.common.adapter
As interfaces can not contain implementation, this class manages interface-level delegation between IRandomAccess and IRandomAccess
IRandomAccessAdapter() - Constructor for class loci.common.adapter.IRandomAccessAdapter
 
IRandomAccessAdapter.LegacyWrapper - Class in loci.common.adapter
This class can be used to wrap loci.common.IRandomAccess objects and be passed to API expecting an ome.scifio.io.IRandomAccess object.
IRandomAccessAdapter.LegacyWrapper(IRandomAccess) - Constructor for class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper
 
IRandomAccessAdapter.ModernWrapper - Class in loci.common.adapter
This class can be used to wrap ome.scifio.io.IRandomAccess objects and be passed to API expecting a loci.common.IRandomAccess object.
IRandomAccessAdapter.ModernWrapper(IRandomAccess) - Constructor for class loci.common.adapter.IRandomAccessAdapter.ModernWrapper
 
is - Variable in class loci.poi.util.BlockingInputStream
 
is_fixed - Variable in class mdbtools.libmdb.MdbColumn
 
IS_GLITCHED - Static variable in class loci.plugins.prefs.OptionsDialog
Flag indicating whether to invoke workaround for AWT refresh bug.
IS_JET3(MdbHandle) - Static method in class mdbtools.libmdb.macros
 
IS_JET4(MdbHandle) - Static method in class mdbtools.libmdb.macros
 
IS_STUB - Static variable in class com.luratech.lwf.lwfDecoder
 
is_text_type(int) - Static method in class mdbtools.mdb_export
 
isAbsolute() - Method in class loci.common.Location
Tests whether or not this path name is absolute.
isAbsolute() - Method in class ome.scifio.io.Location
Tests whether or not this path name is absolute.
isAccessibilityIgnored() - Method in class loci.common.ReflectedUniverse
Gets whether access modifiers (protected, private, etc.) are ignored.
isAccessibilityIgnored() - Method in class ome.scifio.common.ReflectedUniverse
Gets whether access modifiers (protected, private, etc.) are ignored.
isADateFormat(int, String) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil
Given a format ID and its format String, will check to see if the format represents a date format or not.
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord
 
isAfter(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface
returns whether this cell is after the passed in cell
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord
 
isAllocated(int, int) - Method in class loci.poi.util.IntList2d
 
isAllSet(int) - Method in class loci.poi.util.BitField
Are all of the bits set or not? This is a stricter test than isSet, in that all of the bits in a multi-bit set must be set for this method to return true
isAscending() - Method in class mdbtools.dbengine.sql.OrderBy
 
isAttributeRequired(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
isAuto() - Method in class loci.poi.hssf.record.LineFormatRecord
automatic format
isAutoBackground() - Method in class loci.poi.hssf.record.TextRecord
 
isAutoColor() - Method in class loci.poi.hssf.record.TextRecord
true = automaticly selected colour, false = user-selected
isAutofill() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
whether object uses an automatic fill style
isAutoGeneratedText() - Method in class loci.poi.hssf.record.TextRecord
 
isAutoLabelDeleted() - Method in class loci.poi.hssf.record.TextRecord
 
isAutoline() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
whether object uses an automatic line style
isAutomatic() - Method in class loci.poi.hssf.record.AreaFormatRecord
automatic formatting
isAutomaticCategoryCrossing() - Method in class loci.poi.hssf.record.ValueRangeRecord
category crossing point is automatically selected
isAutomaticMajor() - Method in class loci.poi.hssf.record.ValueRangeRecord
automatic major unit selected
isAutomaticMaximum() - Method in class loci.poi.hssf.record.ValueRangeRecord
automatic maximum value selected
isAutomaticMinimum() - Method in class loci.poi.hssf.record.ValueRangeRecord
automatic minimum value selected
isAutomaticMinor() - Method in class loci.poi.hssf.record.ValueRangeRecord
automatic minor unit selected
isAutoPlotArea() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
??
isAutoPosition() - Method in class loci.poi.hssf.record.FrameRecord
excel calculates the position automatically
isAutoPosition() - Method in class loci.poi.hssf.record.LegendRecord
automatic positioning (1=docked)
isAutorotate() - Method in class loci.poi.hssf.record.TickRecord
automatically rotate the text
isAutoscale() - Method in class loci.plugins.in.ImporterOptions
 
isAutoSeries() - Method in class loci.poi.hssf.record.LegendRecord
excel 5 only (true)
isAutoSize() - Method in class loci.poi.hssf.record.FrameRecord
excel calculates the size automatically if true
isAutoTextBackground() - Method in class loci.poi.hssf.record.TickRecord
use the quote unquote automatic color for text background
isAutoTextColor() - Method in class loci.poi.hssf.record.TickRecord
use the quote unquote automatic color for text
isAutoXPositioning() - Method in class loci.poi.hssf.record.LegendRecord
position of legend on the x axis is automatic
isAutoYPositioning() - Method in class loci.poi.hssf.record.LegendRecord
position of legend on the y axis is automatic
isBaxcel() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord
 
isBefore(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface
returns whether this cell is before the passed in cell
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord
 
isBigTiff - Variable in class loci.formats.out.TiffWriter
Whether or not the output file is a BigTIFF file.
isBigTiff() - Method in class loci.formats.tiff.IFD
Gets whether this is a BigTIFF IFD.
isBigTiff() - Method in class loci.formats.tiff.TiffParser
Returns whether or not the current TIFF file contains BigTIFF data.
isBigTiff() - Method in class loci.formats.tiff.TiffSaver
Returns whether or not we are writing BigTIFF data.
isBinary(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
isBlipId() - Method in class loci.poi.ddf.EscherProperty
 
isBoolean() - Method in class loci.poi.hssf.record.BoolErrRecord
Indicates whether the call holds a boolean value
isBorder() - Method in class loci.poi.hssf.record.DatRecord
data table has a border
isBuiltInName() - Method in class loci.poi.hssf.record.NameRecord
Convenience Function to determine if the name is a built-in name
isBZip2File(String) - Static method in class loci.common.BZip2Handle
Returns true if the given filename is a BZip2 file.
isBZip2File(String) - Static method in class ome.scifio.io.BZip2Handle
Returns true if the given filename is a BZip2 file.
isCached() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
isCachedFile() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
isCachedMemory() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
isCellDateFormatted(HSSFCell) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil
Check if a cell contains a date Since dates are stored internally in Excel as double values we infer it is a date if it is formatted as such.
isCellInternalDateFormatted(HSSFCell) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil
Check if a cell contains a date, checking only for internal excel date formats.
isCellOk(String) - Method in class loci.poi.hssf.util.RangeAddress
 
isCertain() - Method in class loci.formats.AxisGuesser
Gets whether the guesser is confident that all axes are correct.
isChartTypeManuallyFormatted() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
Has the chart type been manually formatted?
isColAbsolute() - Method in class loci.poi.hssf.util.CellReference
 
isColorLut() - Method in class loci.plugins.util.RecordedImageProcessor
 
isColorModeColorized() - Method in class loci.plugins.in.ImporterOptions
 
isColorModeComposite() - Method in class loci.plugins.in.ImporterOptions
 
isColorModeCustom() - Method in class loci.plugins.in.ImporterOptions
 
isColorModeDefault() - Method in class loci.plugins.in.ImporterOptions
 
isColorModeGrayscale() - Method in class loci.plugins.in.ImporterOptions
 
isColRelative() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
isColRelative() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
isColumnBroken(short) - Method in class loci.poi.hssf.model.Sheet
Queries if the specified column has a page break
isColumnBroken(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Determines if there is a page break at the indicated column
isColumnGroupCollapsed(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
isColumnGroupHiddenByParent(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
isColumnHidden(short) - Method in class loci.poi.hssf.model.Sheet
Get the hidden property for a given column.
isColumnHidden(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Get the hidden state for a given column.
isCommandName() - Method in class loci.poi.hssf.record.NameRecord
 
isCompatibleRaster(Raster) - Method in class loci.formats.gui.Index16ColorModel
 
isCompatibleRaster(Raster) - Method in class loci.formats.gui.SignedColorModel
 
isCompatibleRaster(Raster) - Method in class loci.formats.gui.UnsignedIntColorModel
 
isComplex() - Method in class loci.poi.ddf.EscherProperty
 
isComplexFunction() - Method in class loci.poi.hssf.record.NameRecord
 
isCompressed() - Method in class loci.poi.ddf.EscherMetafileBlip
 
isCompressed() - Method in class loci.poi.ddf.EscherPictBlip
 
isCompressionLossless - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
Whether the compression is lossless.
isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
Retrieves a value indicating whether the compression is lossless.
isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
 
isCompressionLossless - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
Lossless flag for known compression types.
isCompSpecified(int) - Method in class jj2000.j2k.ModuleSpec
Whether or not specifications have been entered for the given component.
isCompTransfUsed() - Method in class jj2000.j2k.image.CompTransfSpec
Check if component transformation is used in any of the tiles.
isConcatenate() - Method in class loci.plugins.in.ImporterOptions
 
isContainerRecord() - Method in class loci.poi.ddf.EscherRecord
Determine whether this is a container record by inspecting the option field.
isContinueNext() - Method in class loci.poi.hssf.record.RecordInputStream
Returns true iif a Continue record is next in the excel stream
isCrossCategoryAxisAtMaximum() - Method in class loci.poi.hssf.record.ValueRangeRecord
category axis to cross at maximum value
isCrossesFarRight() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
axis crosses at the far right
isCS_sRGB() - Method in class loci.formats.gui.TwoChannelColorSpace
 
isCustomNumberFormat() - Method in class loci.poi.hssf.record.LinkedDataRecord
true if this object has a custom number format
isDataTable() - Method in class loci.poi.hssf.record.LegendRecord
1 if chart contains data table
isDataTypeOK(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Returns true if the given data type may be used for the data associated with this tag.
isDefaultBase() - Method in class loci.poi.hssf.record.AxisOptionsRecord
use the default base unit
isDefaultCross() - Method in class loci.poi.hssf.record.AxisOptionsRecord
use the default crossing point
isDefaultDateSettings() - Method in class loci.poi.hssf.record.AxisOptionsRecord
use default date setttings for this axis
isDefaultMajor() - Method in class loci.poi.hssf.record.AxisOptionsRecord
use the default major unit
isDefaultMaximum() - Method in class loci.poi.hssf.record.AxisOptionsRecord
use the default maximum category
isDefaultMinimum() - Method in class loci.poi.hssf.record.AxisOptionsRecord
use the default minimum category
isDefaultMinorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord
use the default minor unit
isDefaultPlotDimensions() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
Indicates that the default area dimensions should be used.
isDeleteOK() - Method in class loci.poi.poifs.filesystem.DirectoryNode
extensions use this method to verify internal rules regarding deletion of the underlying store.
isDeleteOK() - Method in class loci.poi.poifs.filesystem.DocumentNode
extensions use this method to verify internal rules regarding deletion of the underlying store.
isDeleteOK() - Method in class loci.poi.poifs.filesystem.EntryNode
extensions use this method to verify internal rules regarding deletion of the underlying store.
isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
Returns true if the quantizer of given tile-component uses derived quantization step sizes.
isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
Returns true if given tile-component uses derived quantization step sizes.
isDerived(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec
Returns true if given tile-component uses derived quantization step size.
isDirectory() - Method in class loci.common.Location
Returns true if this pathname exists and represents a directory.
isDirectory() - Method in class loci.poi.poifs.property.DirectoryProperty
 
isDirectory() - Method in class loci.poi.poifs.property.DocumentProperty
 
isDirectory() - Method in class loci.poi.poifs.property.Property
 
isDirectory() - Method in class ome.scifio.io.Location
Returns true if this pathname exists and represents a directory.
isDirectoryEntry() - Method in class loci.poi.poifs.filesystem.DirectoryNode
is this a DirectoryEntry?
isDirectoryEntry() - Method in interface loci.poi.poifs.filesystem.Entry
is this a DirectoryEntry?
isDirectoryEntry() - Method in class loci.poi.poifs.filesystem.EntryNode
is this a DirectoryEntry?
isDisplayAsPercentage() - Method in class loci.poi.hssf.record.AreaRecord
results displayed as percentages
isDisplayAsPercentage() - Method in class loci.poi.hssf.record.BarRecord
display chart values as a percentage
isDisplayFormulas() - Method in class loci.poi.hssf.model.Sheet
Returns if formulas are displayed.
isDisplayFormulas() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Returns if formulas are displayed.
isDisplayGridlines() - Method in class loci.poi.hssf.model.Sheet
Returns if gridlines are displayed.
isDisplayGridlines() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Returns if gridlines are displayed.
isDisplayRowColHeadings() - Method in class loci.poi.hssf.model.Sheet
Returns if RowColHeadings are displayed.
isDisplayRowColHeadings() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Returns if RowColHeadings are displayed.
isDocumentEntry() - Method in class loci.poi.poifs.filesystem.DocumentNode
is this a DocumentEntry?
isDocumentEntry() - Method in interface loci.poi.poifs.filesystem.Entry
is this a DocumentEntry?
isDocumentEntry() - Method in class loci.poi.poifs.filesystem.EntryNode
is this a DocumentEntry?
isDocumentSummaryInformation() - Method in class loci.poi.hpsf.PropertySet
Checks whether this PropertySet is a Document Summary Information.
isDocumentSummaryInformation() - Method in class loci.poi.hpsf.SpecialPropertySet
 
isDoNotSizeWithWindow() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
Do not size the chart when the window changes size
isDrawTicks() - Method in class loci.poi.hssf.record.LineFormatRecord
draw tick marks
isEmpty() - Method in class loci.common.IniList
 
isEmpty() - Method in class loci.common.IniTable
 
isEmpty() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
is this DirectoryEntry empty?
isEmpty() - Method in class loci.poi.poifs.filesystem.DirectoryNode
is this DirectoryEntry empty?
isEmpty() - Method in class loci.poi.util.DoubleList
Returns true if this list contains no elements.
isEmpty() - Method in class loci.poi.util.IntList
Returns true if this list contains no elements.
isEmpty() - Method in class loci.poi.util.ShortList
Returns true if this list contains no elements.
isEOFInBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
Whether the end of the file is in the current buffer or not
isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService
Determine whether or not two OMEXMLMetadata objects are equal.
isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord
 
isEqual(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface
returns whether this cell represents the same cell (NOT VALUE)
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord
 
isError() - Method in class loci.poi.hssf.record.BoolErrRecord
Indicates whether the call holds an error value
isExtendedText() - Method in class loci.poi.hssf.record.UnicodeString
 
isFalse() - Method in class loci.poi.ddf.EscherBoolProperty
Whether this boolean property is false
isFalseColor() - Method in class loci.formats.FileStitcher
 
isFalseColor() - Method in class loci.formats.FormatReader
 
isFalseColor() - Method in interface loci.formats.IFormatReader
Returns false if IFormatReader.isIndexed() is false, or if IFormatReader.isIndexed() is true and the lookup table represents "real" color data.
isFalseColor() - Method in class loci.formats.ImageReader
 
isFalseColor() - Method in class loci.formats.ReaderWrapper
 
isFalseColor() - Method in class loci.tests.testng.Configuration
 
isFiji() - Static method in class loci.plugins.Updater
Returns true if the current ImageJ instance is actually a Fiji instance.
isFile() - Method in class loci.common.Location
Returns true if this pathname exists and represents a regular file.
isFile() - Method in class ome.scifio.io.Location
Returns true if this pathname exists and represents a regular file.
isFilled() - Method in class loci.formats.ChannelFiller
Returns true if the indices are being factored out.
isFirstColRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
isFirstColRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
isFirstRowRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
isFirstRowRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
isFirstTime() - Method in class loci.plugins.in.ImporterOptions
 
isFixed() - Method in class loci.formats.FilePatternBlock
 
isFixedMap() - Method in class ome.metakit.ColumnMap
Return whether or not this map represents a fixed-type column.
isFloatingPoint(int) - Static method in class loci.formats.FormatTools
Determines whether the given pixel type is floating point or integer.
isForceThumbnails() - Method in class loci.plugins.in.ImporterOptions
 
isFormulaInShared(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
isFreezePane() - Method in class loci.poi.hssf.util.PaneInformation
Returns true if this is a Freeze pane, false if it is a split pane.
isFullPlane(int, int, int, int) - Method in class loci.formats.FormatWriter
Returns true if the given rectangle coordinates correspond to a full image in the given series.
isFullyNonReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec
Check the irreversibility of the whole image.
isFullyReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec
Check the reversibility of the whole image.
isFunctionName() - Method in class loci.poi.hssf.record.NameRecord
 
isGenerated() - Method in class loci.poi.hssf.record.TextRecord
 
isGoto() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isGrayscaleMapping(IndexColorModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Tests whether the color indices represent a gray-scale image with the indicated number of bits over the color component range [0,255].
isGridsPrinted() - Method in class loci.poi.hssf.model.Sheet
get whether gridlines are printed.
isGridsPrinted() - Method in class loci.poi.hssf.usermodel.HSSFSheet
get whether gridlines are printed.
isGroupFiles() - Method in class loci.formats.FileStitcher
 
isGroupFiles() - Method in class loci.formats.FormatReader
 
isGroupFiles() - Method in interface loci.formats.IFormatReader
Returns true if we should group files in multi-file formats.
isGroupFiles() - Method in class loci.formats.ImageReader
 
isGroupFiles() - Method in class loci.formats.ReaderWrapper
 
isGroupFiles() - Method in class loci.plugins.in.ImporterOptions
 
isGroupFiles(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isGZipFile(String) - Static method in class loci.common.GZipHandle
Returns true if the given filename is a gzip file.
isGZipFile(String) - Static method in class ome.scifio.io.GZipHandle
Returns true if the given filename is a gzip file.
isHidden() - Method in class loci.common.Location
Returns true if the pathname is 'hidden'.
isHidden() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether the cell is hidden or not
isHidden() - Method in class ome.scifio.io.Location
Returns true if the pathname is 'hidden'.
isHiddenName() - Method in class loci.poi.hssf.record.NameRecord
 
isHorizontal() - Method in class loci.poi.hssf.record.BarRecord
true to display horizontal bar charts, false for vertical
isHorizontalBorder() - Method in class loci.poi.hssf.record.DatRecord
has a horizontal border
isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFChildAnchor
 
isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
isHTTP() - Method in class loci.plugins.in.ImporterOptions
 
isIFDPointer() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
Returns true if this tag is used to point to an IFD structure containing additional tags.
isIgnoredFile(String, ConfigurationTree) - Static method in class loci.tests.testng.TestTools
Determines if the given file should be ignored by the test suite.
isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
isInCache(int[]) - Method in class loci.formats.cache.Cache
Returns true if the object at the given dimensional position is in the cache.
isInCache(int) - Method in class loci.formats.cache.Cache
Returns true if the object at the given index is in the cache.
isIndentNotParentAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether or not to use the alignment in this XF instead of the parent XF.
isIndentNotParentBorder() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether or not to use the border in this XF instead of the parent XF.
isIndentNotParentCellOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether or not to use the locking/hidden in this XF instead of the parent XF.
isIndentNotParentFont() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether or not to use the font in this XF instead of the parent XF.
isIndentNotParentFormat() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether or not to use the format in this XF instead of the parent XF.
isIndentNotParentPattern() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether or not to use the pattern in this XF instead of the parent XF.
isIndexed() - Method in class loci.formats.ChannelFiller
 
isIndexed() - Method in class loci.formats.ChannelMerger
 
isIndexed() - Method in class loci.formats.FileStitcher
 
isIndexed() - Method in class loci.formats.FormatReader
 
isIndexed() - Method in interface loci.formats.IFormatReader
Gets whether the image planes are indexed color.
isIndexed() - Method in class loci.formats.ImageReader
 
isIndexed() - Method in class loci.formats.ReaderWrapper
 
isIndexed(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isIndexed() - Method in class loci.tests.testng.Configuration
 
isIndicesForGrayscale(byte[], byte[], byte[]) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Tests whether the color indices represent a gray-scale image.
isInstance(Class<?>, Object) - Static method in class loci.common.ReflectedUniverse
Returns whether the given object is compatible with the specified class for the purposes of reflection.
isInstance(Class<?>, Object) - Static method in class ome.scifio.common.ReflectedUniverse
Returns whether the given object is compatible with the specified class for the purposes of reflection.
isIntegral() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
Indicates whether the value associated with the field is of integral data type.
isIntensity() - Method in class loci.formats.in.SDTReader
Gets whether the reader is combining each lifetime histogram into a summed intensity image plane.
isInterleaved() - Method in class loci.formats.ChannelMerger
 
isInterleaved() - Method in class loci.formats.FileStitcher
 
isInterleaved(int) - Method in class loci.formats.FileStitcher
 
isInterleaved() - Method in class loci.formats.FormatReader
 
isInterleaved(int) - Method in class loci.formats.FormatReader
 
isInterleaved() - Method in class loci.formats.FormatWriter
 
isInterleaved() - Method in interface loci.formats.IFormatReader
Gets whether or not the channels are interleaved.
isInterleaved(int) - Method in interface loci.formats.IFormatReader
Gets whether or not the given sub-channel is interleaved.
isInterleaved() - Method in interface loci.formats.IFormatWriter
Gets whether or not the channels in an image are interleaved.
isInterleaved() - Method in class loci.formats.ImageReader
 
isInterleaved(int) - Method in class loci.formats.ImageReader
 
isInterleaved() - Method in class loci.formats.ImageWriter
 
isInterleaved(int) - Method in class loci.formats.in.ICSReader
 
isInterleaved(int) - Method in class loci.formats.in.SDTReader
 
isInterleaved() - Method in class loci.formats.ReaderWrapper
 
isInterleaved(int) - Method in class loci.formats.ReaderWrapper
 
isInterleaved() - Method in class loci.formats.WriterWrapper
 
isInterleaved(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isInterleaved() - Method in class loci.tests.testng.Configuration
 
isInterleavedSubC(Double, String[]) - Method in class loci.plugins.macro.LociFunctions
 
isInternalDateFormat(int) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil
Given a format ID this will check whether the format represents an internal excel date format or not.
isInValueSection() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
isInValueSection() - Method in class loci.poi.hssf.record.BlankRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.BoolErrRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.DBCellRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.FormulaRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.LabelRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.NumberRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.Record
DBCELL, ROW, VALUES all say yes
isInValueSection() - Method in class loci.poi.hssf.record.RKRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.RowRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.SharedFormulaRecord
Mirroring formula records so it is registered in the ValueRecordsAggregate
isInValueSection() - Method in class loci.poi.hssf.record.StringRecord
 
isInvert() - Method in class loci.poi.hssf.record.AreaFormatRecord
swap foreground and background colours when data is negative
isInvertedLut() - Method in class loci.plugins.util.RecordedImageProcessor
 
isInvertX() - Method in class loci.formats.in.PrairieMetadata
Gets whether the stage position X coordinates are inverted (i.e., left-to-right).
isInvertY() - Method in class loci.formats.in.PrairieMetadata
Gets whether the stage position Y coordinates are inverted (i.e., bottom-to-top).
isIsDate() - Method in class loci.poi.hssf.record.AxisOptionsRecord
this is a date axis
isItalic() - Method in class loci.poi.hssf.record.FontRecord
get whether the font is to be italics or not
isJPEG - Variable in class loci.formats.in.BaseZeissReader
 
isJVM64Bit() - Method in class loci.formats.gui.LegacyQTTools
Whether this JVM is 64-bit.
isKillable() - Method in class loci.plugins.util.RecordedImageProcessor
Deprecated. 
isLabelAsPercentage() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
show category label/value as percentage (pie charts only)
isLastColRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
isLastColRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
isLastRowRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
isLastRowRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
isLeaf - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
isLeaf(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
 
isLegacy() - Method in class loci.formats.DelegateReader
Gets whether to use the legacy reader by default.
isLicenseCodeException(FormatException) - Static method in class loci.plugins.util.LuraWave
Returns true if the given exception was cause by a missing or invalid LuraWave license code.
isLittleEndian() - Method in class loci.common.NIOInputStream
Gets the endianness of the stream.
isLittleEndian() - Method in class loci.common.RandomAccessInputStream
Gets the endianness of the stream.
isLittleEndian() - Method in class loci.common.RandomAccessOutputStream
Gets the endianness of the stream.
isLittleEndian() - Method in class loci.formats.FileStitcher
 
isLittleEndian() - Method in class loci.formats.FormatReader
 
isLittleEndian() - Method in interface loci.formats.IFormatReader
Gets whether the data is in little-endian format.
isLittleEndian() - Method in class loci.formats.ImageReader
 
isLittleEndian() - Method in class loci.formats.ome.OmeisImporter
Deprecated.
Gets whether the local system uses little-endian byte order.
isLittleEndian() - Method in class loci.formats.ReaderWrapper
 
isLittleEndian() - Method in class loci.formats.tiff.IFD
Gets whether the TIFF information in this IFD is little-endian.
isLittleEndian() - Method in class loci.formats.tiff.TiffSaver
Returns whether or not we are writing little-endian data.
isLittleEndian(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isLittleEndian() - Method in class loci.tests.testng.Configuration
 
isLittleEndian - Variable in class ome.scifio.io.NIOInputStream
Endianness of the stream.
isLittleEndian() - Method in class ome.scifio.io.NIOInputStream
Gets the endianness of the stream.
isLittleEndian() - Method in class ome.scifio.io.RandomAccessInputStream
Gets the endianness of the stream.
isLittleEndian() - Method in class ome.scifio.io.RandomAccessOutputStream
Gets the endianness of the stream.
isLoadedFromMemo() - Method in class loci.formats.Memoizer
 
isLocal() - Method in class loci.plugins.in.ImporterOptions
 
isLocked() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
true if object is locked when sheet has been protected
isLocked() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
get whether the cell is locked or not
isLogarithmicScale() - Method in class loci.poi.hssf.record.ValueRangeRecord
use logarithmic scale
isLogUnsupportedTypes() - Static method in class loci.poi.hpsf.VariantSupport
Checks whether logging of unsupported variant types warning is turned on or off.
isLossless() - Method in class loci.formats.in.ND2Handler
 
isMacoutlined() - Method in class loci.poi.hssf.record.FontRecord
whether to use the mac outline font style thing (mac only) - Some mac person should comment this instead of me doing it (since I have no idea)
isMacro() - Method in class loci.poi.hssf.record.NameRecord
 
isMacshadowed() - Method in class loci.poi.hssf.record.FontRecord
whether to use the mac shado font style thing (mac only) - Some mac person should comment this instead of me doing it (since I have no idea)
isMetadataCollected() - Method in class loci.formats.FormatReader
Deprecated. 
isMetadataCollected() - Method in interface loci.formats.IFormatReader
isMetadataCollected() - Method in class loci.formats.ImageReader
Deprecated. 
isMetadataCollected() - Method in class loci.formats.ReaderWrapper
Deprecated. 
isMetadataCollected(Boolean[]) - Method in class loci.plugins.macro.LociFunctions
 
isMetadataComplete() - Method in class loci.formats.FormatReader
 
isMetadataComplete() - Method in interface loci.formats.IFormatReader
Returns true if this format's metadata is completely parsed.
isMetadataComplete() - Method in class loci.formats.ImageReader
 
isMetadataComplete() - Method in class loci.formats.ReaderWrapper
 
isMetadataComplete(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isMetadataFiltered() - Method in class loci.formats.FormatReader
 
isMetadataFiltered() - Method in interface loci.formats.IFormatReader
Returns true if ugly metadata (entries with unprintable characters, and extremely large entries) are discarded from the metadata table.
isMetadataFiltered() - Method in class loci.formats.ImageReader
 
isMetadataFiltered() - Method in class loci.formats.ReaderWrapper
 
isMetadataFiltered(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isMinMaxPopulated() - Method in class loci.formats.MinMaxCalculator
Returns true if the values returned by getChannelGlobalMinimum/Maximum can be trusted.
isModulo - Variable in class loci.formats.tools.MakeTestOmeTiff
 
isMultibyte() - Method in class loci.poi.hssf.record.FooterRecord
see the unicode flag
isMultibyte() - Method in class loci.poi.hssf.record.HeaderRecord
see the unicode flag
isND2Nikon() - Static method in class loci.plugins.util.LociPrefs
 
isNeeded() - Method in class loci.poi.hssf.record.RecalcIdRecord
 
isNode - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
Flag indicating whether this subband mask is a node or not
isNode - Variable in class jj2000.j2k.wavelet.Subband
True if it is a node in the tree, false if it is a leaf.
isNoFill() - Method in class loci.poi.hssf.usermodel.HSSFShape
 
isNonStandardICCColorSpace(ColorSpace) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
Returns true if the given ColorSpace object is an instance of ICC_ColorSpace but is not one of the standard ColorSpaces returned by ColorSpace.getInstance().
isNormalized() - Method in class loci.formats.FormatReader
 
isNormalized() - Method in interface loci.formats.IFormatReader
Returns true if we should normalize float data.
isNormalized() - Method in class loci.formats.ImageReader
 
isNormalized() - Method in class loci.formats.ReaderWrapper
 
isNormalized(Boolean[]) - Method in class loci.plugins.macro.LociFunctions
 
isNotBigImage() - Method in class loci.tests.testng.OpenBytesPerformanceTest
 
ISO8601_FORMAT - Static variable in class loci.common.DateTools
ISO 8601 date output formatter without milliseconds.
ISO8601_FORMAT_MS - Static variable in class loci.common.DateTools
ISO 8601 date output formatter with milliseconds.
ISO8601_FORMAT_MS - Static variable in class ome.scifio.common.DateTools
ISO 8601 date output format with milliseconds.
ISO8601_FORMAT_MS - Static variable in class ome.xml.model.primitives.Timestamp
ISO 8601 date output format with milliseconds.
ISO8601_FORMAT_S - Static variable in class ome.scifio.common.DateTools
ISO 8601 date output format without milliseconds.
ISO8601_FORMAT_S - Static variable in class ome.xml.model.primitives.Timestamp
ISO 8601 date output format without milliseconds.
ISO8601_FORMATTER_MS - Static variable in class ome.xml.model.primitives.Timestamp
ISO 8601 date output formatter with milliseconds.
ISO8601_FORMATTER_S - Static variable in class ome.xml.model.primitives.Timestamp
ISO 8601 date output formatter without milliseconds.
ISO8601_PARSER - Static variable in class ome.xml.model.primitives.Timestamp
ISO 8601 date input formatter.
ISO_SPEED_RATINGS - Static variable in class loci.formats.tiff.IFD
 
isOMERO - Variable in class loci.ome.io.OMECredentials
 
isOMERO() - Method in class loci.plugins.in.ImporterOptions
 
isOMEXMLMetadata(Object) - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.isOMEXMLMetadata(Object) instead.
isOMEXMLMetadata(Object) - Method in interface loci.formats.services.OMEXMLService
Checks whether the given object is an OME-XML metadata object.
isOMEXMLMetadata(Object) - Method in class loci.formats.services.OMEXMLServiceImpl
 
isOMEXMLRoot(Object) - Static method in class loci.formats.MetadataTools
Deprecated.
This method is not thread-safe; use OMEXMLService.isOMEXMLRoot(Object) instead.
isOMEXMLRoot(Object) - Method in interface loci.formats.services.OMEXMLService
Checks whether the given object is an OME-XML root object.
isOMEXMLRoot(Object) - Method in class loci.formats.services.OMEXMLServiceImpl
 
isOptimizedChoose() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isOptimizedIf() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isOrderCertain() - Method in class loci.formats.FileStitcher
 
isOrderCertain() - Method in class loci.formats.FormatReader
 
isOrderCertain() - Method in interface loci.formats.IFormatReader
Gets whether the dimension order and sizes are known, or merely guesses.
isOrderCertain() - Method in class loci.formats.ImageReader
 
isOrderCertain() - Method in class loci.formats.ReaderWrapper
 
isOrderCertain(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isOriginalMetadataPopulated() - Method in class loci.formats.FormatReader
 
isOriginalMetadataPopulated() - Method in interface loci.formats.IFormatReader
Returns true if we should save proprietary metadata in the MetadataStore.
isOriginalMetadataPopulated() - Method in class loci.formats.ImageReader
 
isOriginalMetadataPopulated() - Method in class loci.formats.ReaderWrapper
 
isOriginalMetadataPopulated(Boolean[]) - Method in class loci.plugins.macro.LociFunctions
 
isOriginalSigned(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
Returns true if the original data of the specified component was signed.
isOrigSig - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
An array specifying, for each component,if the data was signed or not
isOrigSigned(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
Returns true if the data read was originally signed in the specified component, false if not.
isOrigSigned(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReader
Returns true if the data read was originally signed in the specified component, false if not.
isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
Returns true if the data read was originally signed in the specified component, false if not.
isot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT
 
isPacketWritable() - Method in class jj2000.j2k.codestream.writer.PktEncoder
Returns true if the current packet is writable i.e.
isPictQTJava() - Static method in class loci.plugins.util.LociPrefs
 
isPlotVisibleOnly() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
Only show visible cells on the chart.
isPossible(String, String) - Method in class loci.plugins.prefs.OptionsList
Gets whether the specified value is a possible one for the string option with the given key.
isPrintable() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
object appears when printed
isPrintGridlines() - Method in class loci.poi.hssf.usermodel.HSSFSheet
Returns whether gridlines are printed.
isPropertySetStream(InputStream) - Static method in class loci.poi.hpsf.PropertySet
Checks whether an InputStream is in the Horrible Property Set Format.
isPropertySetStream(byte[], int, int) - Static method in class loci.poi.hpsf.PropertySet
Checks whether a byte array is in the Horrible Property Set Format.
isProtected() - Method in class loci.poi.hssf.model.Sheet
 
isPseudoColorLut() - Method in class loci.plugins.util.RecordedImageProcessor
 
isPure() - Method in class loci.poi.hpsf.CustomProperties
Tells whether this CustomProperties instance is pure or one or more properties of the underlying low-level property set has been dropped.
isQTExpired() - Method in class loci.formats.gui.LegacyQTTools
Whether QuickTime for Java has expired.
isQTQTJava() - Static method in class loci.plugins.util.LociPrefs
 
isQuiet() - Method in class loci.plugins.in.ImporterOptions
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
ISRandomAccessIO - Class in jj2000.j2k.util
This class implements a wrapper to turn an InputStream into a RandomAccessIO.
ISRandomAccessIO(InputStream, int, int, int) - Constructor for class jj2000.j2k.util.ISRandomAccessIO
Creates a new RandomAccessIO wrapper for the given InputStream 'is'.
ISRandomAccessIO(InputStream) - Constructor for class jj2000.j2k.util.ISRandomAccessIO
Creates a new RandomAccessIO wrapper for the given InputStream 'is'.
isRawCodestream() - Method in class loci.formats.in.JPEG2000MetadataParser
Whether or not the codestream is raw and not JP2 boxed.
isReaderEnabled(Class<? extends IFormatReader>) - Static method in class loci.plugins.util.LociPrefs
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
isReadWrite - Variable in class ome.scifio.io.NIOFileHandle
Whether or not the file is opened read/write.
isRegex() - Method in class loci.formats.FilePattern
Returns whether or not this pattern is a regular expression.
isReserved() - Method in class loci.poi.hssf.record.ValueRangeRecord
reserved, must equal 1 (excel dev.
isReserved1() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
reserved field
isReversed() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
categories are displayed in reverse order
isReversible(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
Returns the reversibility of the tile-component data that is provided by the object.
isReversible() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
Returns true if this transform is reversible in current tile.
isReversible() - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
Returns true if this transform is reversible in current tile.
isReversible(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
Returns true if the quantized data is reversible, for the specified tile-component.
isReversible(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec
Check the reversibility of the given tile-component.
isReversible(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler
Since ROI scaling is always a reversible operation, it calls isReversible() method of it source (the quantizer module).
isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns the reversibility of the filter.
isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns the reversibility of the filter.
isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
Check the reversibility of filters contained is the given tile-component.
isReversible(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps
Returns the reversibility of the given tile-component.
isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
Returns the reversibility of the wavelet transform for the specified component and tile.
isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
Returns the reversibility of the wavelet transform for the specified component, in the current tile.
isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns the reversibility of the filter.
isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns the reversibility of the filter.
isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
Check the reversibility of filters contained is the given tile-component.
isReversible() - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns the reversibility of the filter.
isReversible(int, int) - Method in interface jj2000.j2k.wavelet.WaveletTransform
Returns the reversibility of the wavelet transform for the specified component and tile.
isRGB() - Method in class loci.formats.ChannelFiller
 
isRGB() - Method in class loci.formats.ChannelMerger
 
isRGB() - Method in class loci.formats.ChannelSeparator
 
isRGB() - Method in class loci.formats.FileStitcher
 
isRGB() - Method in class loci.formats.FormatReader
 
isRGB() - Method in interface loci.formats.IFormatReader
Checks if the image planes in the file have more than one channel per IFormatReader.openBytes(int) call.
isRGB() - Method in class loci.formats.ImageReader
 
isRGB() - Method in class loci.formats.ReaderWrapper
 
isRGB() - Method in interface loci.formats.services.WlzService
Gets boolean for whether image is colour or not.
isRGB() - Method in class loci.formats.services.WlzServiceImpl
 
isRGB() - Method in class loci.tests.testng.Configuration
 
isRichText() - Method in class loci.poi.hssf.record.UnicodeString
 
isROIinPkt() - Method in class jj2000.j2k.codestream.writer.PktEncoder
Tells if there was ROI information in the last written packet
isRoot() - Method in class loci.poi.poifs.filesystem.EntryNode
is this the root of the tree?
isRowAbsolute() - Method in class loci.poi.hssf.util.CellReference
 
isRowBroken(int) - Method in class loci.poi.hssf.model.Sheet
Queries if the specified row has a page break
isRowBroken(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
Determines if there is a page break at the indicated row
isRowGroupCollapsed(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
isRowGroupHiddenByParent(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
isRowRelative() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
isRowRelative() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.
isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.
isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.
isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.
isSameAsFullWT(int, int, int) - Method in interface jj2000.j2k.wavelet.WaveletFilter
Returns true if the wavelet filter computes or uses the same "inner" subband coefficient as the full frame wavelet transform, and false otherwise.
isSaved() - Method in class loci.plugins.prefs.Option
Gets whether option should be saved to ImageJ preferences file.
isSaved(String) - Method in class loci.plugins.prefs.OptionsList
Gets whether the option with the given key is saved to the ImageJ preferences file.
isSavedToMemo() - Method in class loci.formats.Memoizer
 
isSDTIntensity() - Static method in class loci.plugins.util.LociPrefs
 
isSemiVolatile() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isSeriesOn(int) - Method in class loci.plugins.in.ImporterOptions
 
isSet(String) - Method in class loci.plugins.prefs.OptionsList
Gets the value of the boolean option with the given key.
isSet(int) - Method in class loci.poi.util.BitField
Is the field set or not? This is most commonly used for a single-bit field, which is often used to represent a boolean value; the results of using it for a multi-bit field is to determine whether *any* of its bits are set
isSetByDefault(String) - Method in class loci.plugins.prefs.OptionsList
Gets the default value of the boolean option with the given key.
isShadow() - Method in class loci.poi.hssf.record.AreaRecord
display a shadow for the chart
isShadow() - Method in class loci.poi.hssf.record.BarRecord
display a shadow for the chart
isSharedFormula() - Method in class loci.poi.hssf.record.FormulaRecord
 
isSheetNameOk() - Method in class loci.poi.hssf.util.RangeAddress
 
isSheetNameOk(String) - Static method in class loci.poi.hssf.util.RangeAddress
 
isShowActual() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
show actual value of the data point
isShowBubbleSizes() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
??
isShowBubbleSizes() - Method in class loci.poi.hssf.record.TextRecord
 
isShowCategoryLabelAsPercentage() - Method in class loci.poi.hssf.record.TextRecord
 
isShowKey() - Method in class loci.poi.hssf.record.TextRecord
true = draw legend
isShowLabel() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
display category label
isShowLabel() - Method in class loci.poi.hssf.record.TextRecord
 
isShowMetadata() - Method in class loci.plugins.in.ImporterOptions
 
isShowOMEXML() - Method in class loci.plugins.in.ImporterOptions
 
isShowPercent() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
show value as percentage of total (pie charts only)
isShowSeriesKey() - Method in class loci.poi.hssf.record.DatRecord
shows the series key
isShowValue() - Method in class loci.poi.hssf.record.TextRecord
false = text is category label
isShowValueAsPercentage() - Method in class loci.poi.hssf.record.TextRecord
 
isSigned(int) - Static method in class loci.formats.FormatTools
Determines whether the given pixel type is signed or unsigned.
isSingleFile(String) - Method in class loci.formats.FormatReader
 
isSingleFile(String) - Method in interface loci.formats.IFormatReader
Returns true if this is a single-file format.
isSingleFile(String) - Method in class loci.formats.ImageReader
 
isSingleFile(String) - Method in class loci.formats.in.AFIReader
 
isSingleFile(String) - Method in class loci.formats.in.AnalyzeReader
 
isSingleFile(String) - Method in class loci.formats.in.APLReader
 
isSingleFile(String) - Method in class loci.formats.in.BDReader
 
isSingleFile(String) - Method in class loci.formats.in.BioRadReader
 
isSingleFile(String) - Method in class loci.formats.in.BrukerReader
 
isSingleFile(String) - Method in class loci.formats.in.CellSensReader
 
isSingleFile(String) - Method in class loci.formats.in.CellVoyagerReader
 
isSingleFile(String) - Method in class loci.formats.in.DeltavisionReader
 
isSingleFile(String) - Method in class loci.formats.in.FakeReader
 
isSingleFile(String) - Method in class loci.formats.in.FlexReader
 
isSingleFile(String) - Method in class loci.formats.in.FujiReader
 
isSingleFile(String) - Method in class loci.formats.in.FV1000Reader
 
isSingleFile(String) - Method in class loci.formats.in.HitachiReader
 
isSingleFile(String) - Method in class loci.formats.in.ICSReader
 
isSingleFile(String) - Method in class loci.formats.in.ImagicReader
 
isSingleFile(String) - Method in class loci.formats.in.InCellReader
 
isSingleFile(String) - Method in class loci.formats.in.L2DReader
 
isSingleFile(String) - Method in class loci.formats.in.LeicaReader
 
isSingleFile(String) - Method in class loci.formats.in.MetamorphReader
 
isSingleFile(String) - Method in class loci.formats.in.MIASReader
 
isSingleFile(String) - Method in class loci.formats.in.MicromanagerReader
 
isSingleFile(String) - Method in class loci.formats.in.NDPISReader
 
isSingleFile(String) - Method in class loci.formats.in.NiftiReader
 
isSingleFile(String) - Method in class loci.formats.in.NRRDReader
 
isSingleFile(String) - Method in class loci.formats.in.OMETiffReader
 
isSingleFile(String) - Method in class loci.formats.in.OperettaReader
 
isSingleFile(String) - Method in class loci.formats.in.PerkinElmerReader
 
isSingleFile(String) - Method in class loci.formats.in.PrairieReader
 
isSingleFile(String) - Method in class loci.formats.in.ScanrReader
 
isSingleFile(String) - Method in class loci.formats.in.ScreenReader
 
isSingleFile(String) - Method in class loci.formats.in.TCSReader
 
isSingleFile(String) - Method in class loci.formats.in.TillVisionReader
 
isSingleFile(String) - Method in class loci.formats.in.VisitechReader
 
isSingleFile(String) - Method in class loci.formats.in.ZeissLSMReader
 
isSingleFile(String) - Method in class loci.formats.in.ZeissTIFFReader
 
isSingleFile(String) - Method in class loci.formats.ReaderWrapper
 
isSmall(int) - Static method in class loci.poi.poifs.property.Property
does the length indicate a small document?
isSmoothedLine() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
show smooth line
isSpace() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isSpecifyRanges() - Method in class loci.plugins.in.ImporterOptions
 
isSplitChannels() - Method in class loci.plugins.in.ImporterOptions
 
isSplitFocalPlanes() - Method in class loci.plugins.in.ImporterOptions
 
isSplitTimepoints() - Method in class loci.plugins.in.ImporterOptions
 
isStacked() - Method in class loci.poi.hssf.record.AreaRecord
series is stacked
isStacked() - Method in class loci.poi.hssf.record.BarRecord
stack displayed values
isString16bit(int) - Method in class loci.poi.hssf.record.SSTRecord
 
isStruckout() - Method in class loci.poi.hssf.record.FontRecord
get whether the font is to be stricken out or not
isSum() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isSummaryInformation() - Method in class loci.poi.hpsf.PropertySet
Checks whether this PropertySet represents a Summary Information.
isSummaryInformation() - Method in class loci.poi.hpsf.SpecialPropertySet
 
isSupportedType(int) - Method in class loci.formats.FormatWriter
 
isSupportedType(int) - Method in interface loci.formats.IFormatWriter
Checks if the given pixel type is supported.
isSupportedType(int) - Method in class loci.formats.ImageWriter
 
isSupportedType(int) - Method in class loci.formats.WriterWrapper
 
isSwapDimensions() - Method in class loci.plugins.in.ImporterOptions
 
isTermPass - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats
Array of flags indicating terminated passes (valid or non-valid truncation points).
isTextLocked() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
Text has been locked
isThisType(String, boolean) - Method in class loci.formats.DelegateReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.DelegateReader
 
isThisType(String) - Method in class loci.formats.FormatHandler
Checks if a file matches the type of this format handler.
isThisType(String, boolean) - Method in class loci.formats.FormatReader
Checks if a file matches the type of this format reader.
isThisType(byte[]) - Method in class loci.formats.FormatReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.FormatReader
 
isThisType(String) - Method in class loci.formats.FormatReader
 
isThisType(String) - Method in interface loci.formats.IFormatHandler
Checks if the given string is a valid filename for this file format.
isThisType(String, boolean) - Method in interface loci.formats.IFormatReader
Checks if the given file is a valid instance of this file format.
isThisType(byte[]) - Method in interface loci.formats.IFormatReader
Checks if the given block is a valid header for this file format.
isThisType(RandomAccessInputStream) - Method in interface loci.formats.IFormatReader
Checks if the given stream is a valid stream for this file format.
isThisType(String, boolean) - Method in class loci.formats.ImageReader
 
isThisType(byte[]) - Method in class loci.formats.ImageReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.ImageReader
 
isThisType(String) - Method in class loci.formats.ImageReader
 
isThisType(String) - Method in class loci.formats.ImageWriter
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AFIReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AliconaReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AmiraReader
 
isThisType(String, boolean) - Method in class loci.formats.in.AnalyzeReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AnalyzeReader
 
isThisType(String, boolean) - Method in class loci.formats.in.APLReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.APNGReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ARFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AVIReader
 
isThisType(String, boolean) - Method in class loci.formats.in.BDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadGelReader
 
isThisType(String, boolean) - Method in class loci.formats.in.BioRadReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadSCNReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BMPReader
 
isThisType(String, boolean) - Method in class loci.formats.in.BrukerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BrukerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BurleighReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CanonRawReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CellomicsReader
 
isThisType(String, boolean) - Method in class loci.formats.in.CellVoyagerReader
 
isThisType(String, boolean) - Method in class loci.formats.in.CellWorxReader
 
isThisType(String, boolean) - Method in class loci.formats.in.DeltavisionReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DeltavisionReader
 
isThisType(String, boolean) - Method in class loci.formats.in.DicomReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DicomReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DNGReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.Ecat7Reader
 
isThisType(String, boolean) - Method in class loci.formats.in.FakeReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEIReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEITiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FluoviewReader
 
isThisType(String, boolean) - Method in class loci.formats.in.FujiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FujiReader
 
isThisType(String, boolean) - Method in class loci.formats.in.FV1000Reader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FV1000Reader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanDM2Reader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GelReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GIFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HISReader
 
isThisType(String, boolean) - Method in class loci.formats.in.HitachiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HitachiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HRDGDFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImaconReader
 
isThisType(String, boolean) - Method in class loci.formats.in.ImagicReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisHDFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IMODReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImprovisionTiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImspectorReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCell3000Reader
 
isThisType(String, boolean) - Method in class loci.formats.in.InCellReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCellReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.INRReader
 
isThisType(String, boolean) - Method in class loci.formats.in.InveonReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InveonReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPLabReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPWReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IvisionReader
 
isThisType(String, boolean) - Method in class loci.formats.in.JEOLReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JEOLReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPEG2000Reader
 
isThisType(String, boolean) - Method in class loci.formats.in.JPKReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPXReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KhorosReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KodakReader
 
isThisType(String, boolean) - Method in class loci.formats.in.L2DReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.L2DReader
 
isThisType(String, boolean) - Method in class loci.formats.in.LegacyND2Reader
 
isThisType(String, boolean) - Method in class loci.formats.in.LeicaReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LeicaReader
 
isThisType(String, boolean) - Method in class loci.formats.in.LeicaSCNReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LEOReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LIFReader
 
isThisType(String, boolean) - Method in class loci.formats.in.MetamorphReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphTiffReader
 
isThisType(String, boolean) - Method in class loci.formats.in.MIASReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MIASReader
 
isThisType(String, boolean) - Method in class loci.formats.in.MicromanagerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MicromanagerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MinimalTiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MNGReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MolecularImagingReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRCReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRWReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeND2Reader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeQTReader
 
isThisType(String, boolean) - Method in class loci.formats.in.NDPIReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NDPISReader
 
isThisType(String, boolean) - Method in class loci.formats.in.NiftiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NiftiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonElementsTiffReader
 
isThisType(String, boolean) - Method in class loci.formats.in.NikonReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonTiffReader
 
isThisType(String, boolean) - Method in class loci.formats.in.NRRDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NRRDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OBFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMETiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMEXMLReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabRawReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabReader
 
isThisType(String, boolean) - Method in class loci.formats.in.OperettaReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OperettaReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OxfordInstrumentsReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCIReader
 
isThisType(String, boolean) - Method in class loci.formats.in.PCORAWReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCORAWReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCXReader
 
isThisType(String, boolean) - Method in class loci.formats.in.PDSReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PDSReader
 
isThisType(String, boolean) - Method in class loci.formats.in.PerkinElmerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PGMReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PhotoshopTiffReader
 
isThisType(String, boolean) - Method in class loci.formats.in.PrairieReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PrairieReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PSDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PyramidTiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SBIGReader
 
isThisType(String, boolean) - Method in class loci.formats.in.ScanrReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScanrReader
 
isThisType(String, boolean) - Method in class loci.formats.in.ScreenReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScreenReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SEQReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SIFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SimplePCITiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SISReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookTiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SMCameraReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SpiderReader
 
isThisType(String, boolean) - Method in class loci.formats.in.SVSReader
 
isThisType(String, boolean) - Method in class loci.formats.in.TCSReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TCSReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TextReader
 
isThisType(String, boolean) - Method in class loci.formats.in.TillVisionReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TopometrixReader
 
isThisType(String, boolean) - Method in class loci.formats.in.TrestleReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TrestleReader
 
isThisType(String, boolean) - Method in class loci.formats.in.UnisokuReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.UnisokuReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VarianFDFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VGSAMReader
 
isThisType(String, boolean) - Method in class loci.formats.in.VisitechReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityClippingReader
 
isThisType(String, boolean) - Method in class loci.formats.in.VolocityReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.WATOPReader
 
isThisType(String, boolean) - Method in class loci.formats.in.WlzReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissCZIReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissLSMReader
 
isThisType(String, boolean) - Method in class loci.formats.in.ZeissTIFFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader
 
isThisType(String, boolean) - Method in class loci.formats.ReaderWrapper
 
isThisType(byte[]) - Method in class loci.formats.ReaderWrapper
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.ReaderWrapper
 
isThisType(String) - Method in class loci.formats.ReaderWrapper
 
isThisType(String) - Method in class loci.formats.WriterWrapper
 
isThisType(RandomAccessInputStream) - Method in class loci.ome.io.OMEReader
 
isThisType(String) - Method in class loci.ome.io.OMEReader
 
isThisType(String, boolean) - Method in class loci.ome.io.OmeroReader
 
isThisType(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
isThisTypeFast(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
isThumbnailSeries() - Method in class loci.formats.FileStitcher
 
isThumbnailSeries() - Method in class loci.formats.FormatReader
 
isThumbnailSeries() - Method in interface loci.formats.IFormatReader
Gets whether the current series is a lower resolution copy of a different series.
isThumbnailSeries() - Method in class loci.formats.ImageReader
 
isThumbnailSeries() - Method in class loci.formats.ReaderWrapper
 
isTiffImageIO() - Static method in class loci.plugins.util.LociPrefs
 
isTileCompSpecified(int, int) - Method in class jj2000.j2k.ModuleSpec
Whether or not a tile-component specification has been defined
isTiled() - Method in class loci.formats.tiff.IFD
 
isTileSpecified(int) - Method in class jj2000.j2k.ModuleSpec
Whether or not specifications have been entered for the given tile.
isTimeSeries() - Method in class loci.formats.in.PrairieMetadata.Sequence
Gets whether this Sequence should be considered a time series.
isTopDown() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
Returns the value of the topDown parameter.
isTrue() - Method in class loci.poi.ddf.EscherBoolProperty
Whether this boolean property is true
isUnCompressedUnicode() - Method in class loci.poi.hssf.record.LabelRecord
is this uncompressed unicode (16bit)? Or just 8-bit compressed?
isUnCompressedUnicode() - Method in class loci.poi.hssf.record.StringRecord
is this uncompressed unicode (16bit)? Or just 8-bit compressed?
isUngroupFiles() - Method in class loci.plugins.in.ImporterOptions
 
isUnicodeString(String) - Static method in class loci.poi.util.StringUtil
Checks to see if a given String needs to be represented as Unicode
isUnknown() - Method in class loci.poi.hssf.record.LineFormatRecord
book marks this as reserved = 0 but it seems to do something
isUsedFile(String) - Method in class loci.formats.FormatReader
Returns true if the given file name is in the used files list.
isUseExcel4Colors() - Method in class loci.poi.hssf.record.DataFormatRecord
set true to use excel 4 colors.
isUsing1904DateWindowing() - Method in class loci.poi.hssf.model.Workbook
Whether date windowing is based on 1/2/1904 or 1/1/1900.
isUsingPatternIds() - Method in class loci.formats.FileStitcher
Gets whether the reader is using file patterns for IDs.
isValid() - Method in class loci.formats.FilePattern
Gets whether the file pattern string is valid.
isValidExcelDate(double) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil
Given a double, checks if it is a valid Excel date.
isValidHeader() - Method in class loci.formats.tiff.TiffParser
Tests this stream to see if it represents a TIFF file.
isValidRange(int, int, int) - Static method in class loci.formats.tools.FakeImage
 
isValue() - Method in class loci.poi.hssf.record.BlankRecord
 
isValue() - Method in class loci.poi.hssf.record.BoolErrRecord
 
isValue() - Method in class loci.poi.hssf.record.FormulaRecord
 
isValue() - Method in class loci.poi.hssf.record.LabelRecord
 
isValue() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isValue() - Method in class loci.poi.hssf.record.NumberRecord
 
isValue() - Method in class loci.poi.hssf.record.Record
tells whether this type of record contains a value
isValue() - Method in class loci.poi.hssf.record.RKRecord
 
isValue() - Method in class loci.poi.hssf.record.SharedFormulaRecord
Register it in the ValueRecordsAggregate so it can go into the FormulaRecordAggregate
isValueAxisCrossing() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
set true to indicate axis crosses between categories and false to cross axis midway
isValuesInReverse() - Method in class loci.poi.hssf.record.ValueRangeRecord
values are reverses in graph
isVersionChecking() - Method in class loci.formats.Memoizer
Returns whether or not version checking is done based upon major/minor version numbers.
isVertical() - Method in class loci.poi.hssf.record.LegendRecord
vertical or horizontal legend (1 or 0 respectively).
isVertical() - Method in class loci.poi.hssf.record.TextRecord
true = text is vertical
isVerticalBorder() - Method in class loci.poi.hssf.record.DatRecord
has vertical border
isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFChildAnchor
 
isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
isViewBrowser() - Method in class loci.plugins.in.ImporterOptions
 
isViewHyperstack() - Method in class loci.plugins.in.ImporterOptions
 
isViewImage5D() - Method in class loci.plugins.in.ImporterOptions
 
isViewNone() - Method in class loci.plugins.in.ImporterOptions
 
isViewStandard() - Method in class loci.plugins.in.ImporterOptions
 
isViewView5D() - Method in class loci.plugins.in.ImporterOptions
 
isVirtual() - Method in class loci.plugins.in.ImporterOptions
 
isVisible() - Method in class loci.poi.hssf.usermodel.HSSFComment
Sets whether this comment is visible.
isWarning() - Method in class loci.common.StatusEvent
Returns whether or not this is a warning event.
isWarning() - Method in class ome.scifio.common.StatusEvent
Returns whether or not this is a warning event.
isWindowless() - Method in class loci.plugins.in.ImporterOptions
 
isWindowless() - Method in class loci.plugins.in.ImportProcess
 
isWindowless(IFormatReader) - Static method in class loci.plugins.util.LociPrefs
Gets whether windowless mode should be used when opening this reader's currently initialized dataset.
isZipFile(String) - Static method in class loci.common.ZipHandle
Returns true if the given filename is a Zip file.
isZipFile(String) - Static method in class ome.scifio.io.ZipHandle
Returns true if the given filename is a Zip file.
isZlib - Variable in class loci.formats.in.BaseZeissReader
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ConfigWindow
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ND2Widgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.PictWidgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.QTWidgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.SDTWidgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.TiffDelegateWidgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.in.MainDialog
Handles toggling of mutually exclusive options.
itemStateChanged(ItemEvent) - Method in class loci.plugins.in.SwapDialog
 
IterationRecord - Class in loci.poi.hssf.record
Title: Iteration Record
IterationRecord() - Constructor for class loci.poi.hssf.record.IterationRecord
 
IterationRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.IterationRecord
Constructs an Iteration record and sets its fields appropriately.
iterator() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
Returns an Iterator over the TIFF fields.
iterator() - Method in class loci.common.IniList
 
iterator() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
iterator() - Method in class loci.poi.util.IntMapper
 
ITKBridgePipes - Class in loci.formats.itk
ITKBridgePipes is a Java console application that listens for "commands" on stdin and issues results on stdout.
ITKBridgePipes() - Constructor for class loci.formats.itk.ITKBridgePipes
 
IvisionReader - Class in loci.formats.in
IvisionReader is the file format reader for IVision (.IPM) files.
IvisionReader() - Constructor for class loci.formats.in.IvisionReader
Constructs a new Ivision reader.

J

J2KImageReader - Class in com.sun.media.imageioimpl.plugins.jpeg2000
This class is the Java Image IO plugin reader for JPEG 2000 JP2 image file format.
J2KImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
Constructs J2KImageReader from the provided ImageReaderSpi.
J2KImageReaderResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KImageReaderResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources
 
J2KImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
 
J2KImageReadParam - Class in com.sun.media.imageio.plugins.jpeg2000
A subclass of ImageReadParam for reading images in the JPEG 2000 format.
J2KImageReadParam() - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam
Constructs a default instance of J2KImageReadParam.
J2KImageReadParamJava - Class in com.sun.media.imageioimpl.plugins.jpeg2000
A subclass of ImageReadParam for reading images in the JPEG 2000 format.
J2KImageReadParamJava() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
Constructs a default instance of J2KImageReadParamJava.
J2KImageReadParamJava(ImageReadParam) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
 
J2KImageWriteParam - Class in com.sun.media.imageio.plugins.jpeg2000
A subclass of ImageWriteParam for writing images in the JPEG 2000 format.
J2KImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Constructor which sets the Locale.
J2KImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
Constructs a J2KImageWriteParam object with default values for all parameters.
J2KImageWriteParamJava - Class in com.sun.media.imageioimpl.plugins.jpeg2000
A subclass of ImageWriteParam for writing images in the JPEG 2000 format.
J2KImageWriteParamJava(RenderedImage, Locale) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Constructor to set locales.
J2KImageWriteParamJava(IIOImage, ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Constructor to set locales.
J2KImageWriteParamJava() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Constructs a J2KImageWriteParamJava object with default values for all parameters.
J2KImageWriteParamJava(RenderedImage) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Constructs a J2KImageWriteParamJava object with default values for all parameters.
J2KImageWriteParamJava(Raster) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
Constructs a J2KImageWriteParamJava object with default values for all parameters.
J2KImageWriter - Class in com.sun.media.imageioimpl.plugins.jpeg2000
The Java Image IO plugin writer for encoding a RenderedImage into a JPEG 2000 part 1 file (JP2) format.
J2KImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
Constructs J2KImageWriter based on the provided ImageWriterSpi.
J2KImageWriterResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KImageWriterResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources
 
J2KImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
 
J2KMetadata - Class in com.sun.media.imageioimpl.plugins.jpeg2000
Metadata for the J2K plug-in.
J2KMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
Constructor containing code shared by other constructors.
J2KMetadata(ImageInputStream, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
J2KMetadata(ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
Constructs a default stream J2KMetadata object appropriate for the given write parameters.
J2KMetadata(ImageTypeSpecifier, ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
Constructs a default image J2KMetadata object appropriate for the given image type and write parameters.
J2KMetadata(ColorModel, SampleModel, int, int, ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
Constructs a default image J2KMetadata object appropriate for the given image type and write parameters.
J2KMetadataFormat - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources
 
J2KReadState - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KReadState(ImageInputStream, J2KImageReadParamJava, J2KMetadata, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
Constructs J2KReadState.
J2KReadState(ImageInputStream, J2KImageReadParamJava, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
Constructs J2KReadState.
J2KRenderedImage - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KRenderedImage(ImageInputStream, J2KImageReadParamJava, J2KMetadata, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
 
J2KRenderedImage(ImageInputStream, J2KImageReadParamJava, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
 
J2KRenderedImage(J2KReadState) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
 
JAIIIOService - Interface in loci.formats.services
Interface defining methods for reading data using JAI Image I/O.
JAIIIOServiceImpl - Class in loci.formats.services
Implementation of JAIIIOService for reading and writing JPEG-2000 data.
JAIIIOServiceImpl() - Constructor for class loci.formats.services.JAIIIOServiceImpl
Default constructor.
JavaWriter - Class in loci.formats.out
JavaWriter is the file format writer for Java source code.
JavaWriter() - Constructor for class loci.formats.out.JavaWriter
 
JEOLReader - Class in loci.formats.in
JEOLReader is the file format reader for JEOL files.
JEOLReader() - Constructor for class loci.formats.in.JEOLReader
Constructs a new JEOL reader.
jj2000.j2k - package jj2000.j2k
 
jj2000.j2k.codestream - package jj2000.j2k.codestream
 
jj2000.j2k.codestream.reader - package jj2000.j2k.codestream.reader
 
jj2000.j2k.codestream.writer - package jj2000.j2k.codestream.writer
 
jj2000.j2k.decoder - package jj2000.j2k.decoder
 
jj2000.j2k.entropy - package jj2000.j2k.entropy
 
jj2000.j2k.entropy.decoder - package jj2000.j2k.entropy.decoder
 
jj2000.j2k.entropy.encoder - package jj2000.j2k.entropy.encoder
 
jj2000.j2k.fileformat - package jj2000.j2k.fileformat
 
jj2000.j2k.fileformat.reader - package jj2000.j2k.fileformat.reader
 
jj2000.j2k.fileformat.writer - package jj2000.j2k.fileformat.writer
 
jj2000.j2k.image - package jj2000.j2k.image
 
jj2000.j2k.image.forwcomptransf - package jj2000.j2k.image.forwcomptransf
 
jj2000.j2k.image.input - package jj2000.j2k.image.input
 
jj2000.j2k.image.invcomptransf - package jj2000.j2k.image.invcomptransf
 
jj2000.j2k.io - package jj2000.j2k.io
 
jj2000.j2k.quantization - package jj2000.j2k.quantization
 
jj2000.j2k.quantization.dequantizer - package jj2000.j2k.quantization.dequantizer
 
jj2000.j2k.quantization.quantizer - package jj2000.j2k.quantization.quantizer
 
jj2000.j2k.roi - package jj2000.j2k.roi
 
jj2000.j2k.roi.encoder - package jj2000.j2k.roi.encoder
 
jj2000.j2k.util - package jj2000.j2k.util
 
jj2000.j2k.wavelet - package jj2000.j2k.wavelet
 
jj2000.j2k.wavelet.analysis - package jj2000.j2k.wavelet.analysis
 
jj2000.j2k.wavelet.synthesis - package jj2000.j2k.wavelet.synthesis
 
JJ2KExceptionHandler - Class in jj2000.j2k
This class handles exceptions.
JJ2KExceptionHandler() - Constructor for class jj2000.j2k.JJ2KExceptionHandler
 
JJ2KInfo - Class in jj2000.j2k
This class holds general JJ2000 information, such as the version number, copyright, contact address, etc.
JJ2KInfo() - Constructor for class jj2000.j2k.JJ2KInfo
 
join(AbstractEscherHolderRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
Big drawing group records are split but it's easier to deal with them as a whole group so we need to join them together.
Join - Class in mdbtools.dbengine.sql
 
Join() - Constructor for class mdbtools.dbengine.sql.Join
 
JP2_HEADER_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
JP2_SIGNATURE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
Main boxes
JPEG2000BoxType - Enum in loci.formats.codec
An enumeration of JPEG 2000 box types.
JPEG2000Codec - Class in loci.formats.codec
This class implements JPEG 2000 compression and decompression.
JPEG2000Codec() - Constructor for class loci.formats.codec.JPEG2000Codec
 
JPEG2000CodecOptions - Class in loci.formats.codec
Options for compressing and decompressing JPEG-2000 data.
JPEG2000CodecOptions() - Constructor for class loci.formats.codec.JPEG2000CodecOptions
Creates a new instance.
JPEG2000CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.JPEG2000CodecOptions
Creates a new instance with options.
Jpeg2000GrindTest - Class in loci.tests.testng
Test grinding in a multi-threaded environment a JPEG-2000 encoded TIFF.
Jpeg2000GrindTest() - Constructor for class loci.tests.testng.Jpeg2000GrindTest
 
JPEG2000MetadataParser - Class in loci.formats.in
A parser for JPEG 2000 metadata.
JPEG2000MetadataParser(RandomAccessInputStream) - Constructor for class loci.formats.in.JPEG2000MetadataParser
Constructs a new JPEG2000MetadataParser.
JPEG2000MetadataParser(RandomAccessInputStream, long) - Constructor for class loci.formats.in.JPEG2000MetadataParser
Constructs a new JPEG2000MetadataParser.
JPEG2000Reader - Class in loci.formats.in
JPEG2000Reader is the file format reader for JPEG-2000 images.
JPEG2000Reader() - Constructor for class loci.formats.in.JPEG2000Reader
Constructs a new JPEG2000Reader.
JPEG2000SegmentMarker - Enum in loci.formats.codec
An enumeration of JPEG 2000 segment markers.
JPEG2000Writer - Class in loci.formats.out
JPEG2000Writer is the file format writer for JPEG2000 files.
JPEG2000Writer() - Constructor for class loci.formats.out.JPEG2000Writer
Creates a new instance.
JPEG_AC_TABLES - Static variable in class loci.formats.tiff.IFD
 
JPEG_DC_TABLES - Static variable in class loci.formats.tiff.IFD
 
JPEG_INTERCHANGE_FORMAT - Static variable in class loci.formats.tiff.IFD
 
JPEG_INTERCHANGE_FORMAT_LENGTH - Static variable in class loci.formats.tiff.IFD
 
JPEG_LOSSLESS_PREDICTORS - Static variable in class loci.formats.tiff.IFD
 
JPEG_POINT_TRANSFORMS - Static variable in class loci.formats.tiff.IFD
 
JPEG_PROC - Static variable in class loci.formats.tiff.IFD
 
JPEG_PROC_BASELINE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "JPEGProc" tag.
JPEG_PROC_LOSSLESS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
A value to be used with the "JPEGProc" tag.
JPEG_Q_TABLES - Static variable in class loci.formats.tiff.IFD
 
JPEG_RESTART_INTERVAL - Static variable in class loci.formats.tiff.IFD
 
JPEG_TABLES - Static variable in class loci.formats.tiff.IFD
 
JPEGCodec - Class in loci.formats.codec
This class implements JPEG compression and decompression.
JPEGCodec() - Constructor for class loci.formats.codec.JPEGCodec
 
JPEGParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
ImageWriteParam for JPEG writer.
JPEGParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
JPEGReader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
JPEGReader - Class in loci.formats.in
JPEGReader is the file format reader for JPEG images.
JPEGReader() - Constructor for class loci.formats.in.JPEGReader
Constructs a new JPEGReader.
JPEGStreamMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
Stream metadata equivalent to a tables-only stream such as in the JPEGTables.
JPEGTileDecoder - Class in loci.formats.codec
Source code: Trac, Gitweb
JPEGTileDecoder() - Constructor for class loci.formats.codec.JPEGTileDecoder
 
JPEGTurboService - Interface in loci.formats.services
Source code: Trac, Gitweb
JPEGTurboServiceImpl - Class in loci.formats.services
Based upon the NDPI to OME-TIFF converter by Matthias Baldauf: http://matthias-baldauf.at/software/ndpi_converter/ Source code: Trac, Gitweb
JPEGTurboServiceImpl() - Constructor for class loci.formats.services.JPEGTurboServiceImpl
 
JPEGWriter - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
The JPEG writer.
JPEGWriter - Class in loci.formats.out
JPEGWriter is the file format writer for JPEG files.
JPEGWriter() - Constructor for class loci.formats.out.JPEGWriter
 
JPKReader - Class in loci.formats.in
JPKReader is the file format reader for JPK Instruments files.
JPKReader() - Constructor for class loci.formats.in.JPKReader
Constructs a new JPK reader.
JPXReader - Class in loci.formats.in
JPXReader is the file format reader for JPX (3D JPEG-2000) images.
JPXReader() - Constructor for class loci.formats.in.JPXReader
Constructs a new JPX Reader.
JUSTIFY - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
jvm64Bit - Variable in class loci.formats.gui.LegacyQTTools
Flag indicating 64-bit JVM (does not support QTJava).
JVM_64BIT_MSG - Static variable in class loci.formats.gui.LegacyQTTools
 

K

key - Variable in class loci.plugins.prefs.Option
Key name for ImageJ preferences file.
KEY_AUTOSCALE - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_COLOR_MODE - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_CONCATENATE - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_CROP - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_FIRST - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_FORCE_THUMBS - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_GROUP_FILES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_ID - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_LOCATION - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_OPEN_ALL_SERIES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_PREFIX - Static variable in class loci.plugins.prefs.Option
Prefix to use for all LOCI plugins preferences.
KEY_QUIET - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SHOW_METADATA - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SHOW_OME_XML - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SHOW_ROIS - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SPECIFY_RANGES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SPLIT_C - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SPLIT_T - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SPLIT_Z - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_STACK_FORMAT - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_STACK_ORDER - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_STITCH_TILES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SWAP_DIMS - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_UNGROUP_FILES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_UPGRADE_CHECK - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_VIRTUAL - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_WINDOWLESS - Static variable in class loci.plugins.in.ImporterOptions
 
keyPressed(KeyEvent) - Method in class loci.formats.gui.ImageViewer
Handles key presses.
keyReleased(KeyEvent) - Method in class loci.formats.gui.ImageViewer
 
keys(Hashtable<String, Object>) - Static method in class loci.formats.MetadataTools
Gets a sorted list of keys from the given hashtable.
keySet() - Method in class loci.common.IniTable
 
keySet() - Method in class loci.poi.util.BinaryTree
Returns a set view of the keys contained in this map.
keySetByValue() - Method in class loci.poi.util.BinaryTree
Returns a set view of the keys contained in this map.
keyTyped(KeyEvent) - Method in class loci.formats.gui.ImageViewer
 
KH - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
The value of the high-pass subband normalization factor
KH - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
The value of the high-pass subband normalization factor
KHOROS_MAGIC_BYTES - Static variable in class loci.formats.in.KhorosReader
 
KhorosReader - Class in loci.formats.in
Reader for Khoros XV files.
KhorosReader() - Constructor for class loci.formats.in.KhorosReader
Constructs a new Khoros reader.
kind - Variable in class loci.formats.out.ImageIOWriter
 
kkd_pg - Variable in class mdbtools.libmdb.MdbCatalogEntry
 
kkd_rowid - Variable in class mdbtools.libmdb.MdbCatalogEntry
 
KL - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
The value of the low-pass subband normalization factor
KL - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
The value of the low-pass subband normalization factor
KNOWN_VERSIONS - Static variable in class loci.formats.in.LiFlimReader
 
KodakReader - Class in loci.formats.in
KodakReader is the file format reader for Kodak Molecular Imaging .bip files.
KodakReader() - Constructor for class loci.formats.in.KodakReader
Constructs a new Kodak reader.
kryo - Variable in class loci.formats.Memoizer.KryoDeser
 

L

L2DReader - Class in loci.formats.in
L2DReader is the file format reader for Li-Cor L2D datasets.
L2DReader() - Constructor for class loci.formats.in.L2DReader
Construct a new L2D reader.
l2Norm - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn
The L2-norm of the synthesis basis waveform of this subband, applicable to "leafs" only.
label - Variable in class loci.plugins.prefs.Option
Label describing the option, for use with ImageJ dialogs.
Label - Class in ome.xml.model
 
Label() - Constructor for class ome.xml.model.Label
Default constructor.
Label(Element, OMEModel) - Constructor for class ome.xml.model.Label
Constructs Label recursively from an XML DOM tree.
Label(Label) - Constructor for class ome.xml.model.Label
Copy constructor.
LabelRecord - Class in loci.poi.hssf.record
Label Record - read only support for strings stored directly in the cell..
LabelRecord() - Constructor for class loci.poi.hssf.record.LabelRecord
Creates new LabelRecord
LabelRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LabelRecord
Constructs an Label record and sets its fields appropriately.
labels - Variable in class loci.formats.Modulo
 
labels - Variable in class loci.plugins.config.FormatEntry
 
LabelSSTRecord - Class in loci.poi.hssf.record
Title: Label SST Record
LabelSSTRecord() - Constructor for class loci.poi.hssf.record.LabelSSTRecord
 
LabelSSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LabelSSTRecord
Constructs an LabelSST record and sets its fields appropriately.
Laser - Class in ome.xml.model
 
Laser() - Constructor for class ome.xml.model.Laser
Default constructor.
Laser(Element, OMEModel) - Constructor for class ome.xml.model.Laser
Constructs Laser recursively from an XML DOM tree.
Laser(Laser) - Constructor for class ome.xml.model.Laser
Copy constructor.
LaserMedium - Enum in ome.xml.model.enums
 
LaserMediumEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for LaserMedium.
LaserMediumEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LaserMediumEnumHandler
 
LaserType - Enum in ome.xml.model.enums
 
LaserTypeEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for LaserType.
LaserTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LaserTypeEnumHandler
 
lastId - Variable in class loci.formats.gui.PreviewPane
Last ID loaded.
lastIndexOf(Object) - Method in class loci.common.IniList
 
lastIndexOf(double) - Method in class loci.poi.util.DoubleList
Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.
lastIndexOf(int) - Method in class loci.poi.util.IntList
Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.
lastIndexOf(short) - Method in class loci.poi.util.ShortList
Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.
lastLengthPos - Variable in class loci.poi.hssf.record.UnicodeString.UnicodeRecordStats
 
lastModified() - Method in class loci.common.Location
Return the last modification time of this file, in milliseconds since the UNIX epoch.
lastModified() - Method in class ome.scifio.io.Location
Return the last modification time of this file, in milliseconds since the UNIX epoch.
lastPlane - Variable in class loci.formats.in.BaseZeissReader
 
lastPlane - Variable in class loci.formats.in.MinimalTiffReader
 
LATEST_VERSION - Static variable in class loci.formats.services.OMEXMLServiceImpl
Latest OME-XML version namespace.
LATITUDE_REF_NORTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSLatitudeRef" and "GPSDestLatitudeRef" tags.
LATITUDE_REF_SOUTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSLatitudeRef" and "GPSDestLatitudeRef" tags.
layerIdx - Variable in class jj2000.j2k.codestream.reader.PktInfo
The layer associated with the current code-block in this packet.
layers - Variable in class loci.formats.in.BaseZeissReader
 
layers - Variable in class loci.formats.in.ZeissTIFFHandler
 
LayersInfo - Class in jj2000.j2k.entropy.encoder
This class stores the specification of a layer distribution in the bit stream.
LayersInfo(float) - Constructor for class jj2000.j2k.entropy.encoder.LayersInfo
Creates a new LayersInfo object.
LAYOUT_TABLE - Static variable in class loci.formats.in.LiFlimReader
 
lblockNo - Variable in class loci.formats.in.SDTInfo
Long blockNo - see remarks below.
lcm(int, int) - Static method in class jj2000.j2k.util.MathUtil
Method that calculates the Least Common Multiple (LCM) of two strictly positive integer numbers.
lcm(int[]) - Static method in class jj2000.j2k.util.MathUtil
Method that calculates the Least Common Multiple (LCM) of several positive integer numbers.
lcoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
 
lcod - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
 
lcom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM
 
lcrg - Variable in class jj2000.j2k.codestream.HeaderInfo.CRG
 
lcs - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
The length calculation specifications
LCS_CALIBRATED_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
LCS_sRGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
LCS_WINDOWS_COLOR_SPACE - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
Leader - Class in ome.xml.model
 
Leader() - Constructor for class ome.xml.model.Leader
Default constructor.
Leader(Element, OMEModel) - Constructor for class ome.xml.model.Leader
Constructs Leader recursively from an XML DOM tree.
Leader(Leader) - Constructor for class ome.xml.model.Leader
Copy constructor.
LEAST_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Least Dots
LEFT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
LeftMargin - Static variable in class loci.poi.hssf.model.Sheet
 
LeftMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet
 
LeftMarginRecord - Class in loci.poi.hssf.record
Record for the left margin.
LeftMarginRecord() - Constructor for class loci.poi.hssf.record.LeftMarginRecord
 
LeftMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LeftMarginRecord
Constructs a LeftMargin record and sets its fields appropriately.
legacy - Variable in class loci.formats.out.QTWriter
Legacy QuickTime writer.
LegacyAdapter<L,M> - Interface in loci.legacy.adapter
This interface represents adapter classes for delegating between equivalent "Legacy" and "Modern" classes.
LegacyND2Reader - Class in loci.formats.in
LegacyND2Reader is a file format reader for Nikon ND2 files that uses the Nikon ND2 SDK - it is only usable on Windows machines.
LegacyND2Reader() - Constructor for class loci.formats.in.LegacyND2Reader
 
LegacyQTReader - Class in loci.formats.in
LegacyQTReader is a file format reader for QuickTime movie files.
LegacyQTReader() - Constructor for class loci.formats.in.LegacyQTReader
Constructs a new QT reader.
LegacyQTTools - Class in loci.formats.gui
Utility class for working with QuickTime for Java.
LegacyQTTools() - Constructor for class loci.formats.gui.LegacyQTTools
 
LegacyQTWriter - Class in loci.formats.out
LegacyQTWriter is a file format writer for QuickTime movies.
LegacyQTWriter() - Constructor for class loci.formats.out.LegacyQTWriter
 
legacyReader - Variable in class loci.formats.DelegateReader
Legacy reader.
legacyReaderInitialized - Variable in class loci.formats.DelegateReader
Flag indicating that the legacy reader was successfully initialized.
LEGAL_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
LegendRecord - Class in loci.poi.hssf.record
Defines a legend for a chart.
LegendRecord() - Constructor for class loci.poi.hssf.record.LegendRecord
 
LegendRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LegendRecord
Constructs a Legend record and sets its fields appropriately.
LEI_SUFFIX - Static variable in class loci.formats.in.LeicaReader
 
LeicaHandler - Class in loci.formats.in
SAX handler for parsing XML in Leica LIF and Leica TCS files.
LeicaHandler(MetadataStore, MetadataLevel) - Constructor for class loci.formats.in.LeicaHandler
 
LeicaReader - Class in loci.formats.in
LeicaReader is the file format reader for Leica files.
LeicaReader() - Constructor for class loci.formats.in.LeicaReader
Constructs a new Leica reader.
LeicaSCNReader - Class in loci.formats.in
LeicaSCNReader is the file format reader for Leica SCN TIFF files.
LeicaSCNReader() - Constructor for class loci.formats.in.LeicaSCNReader
Constructs a new LeicaSCN reader.
len - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
Length of each piece of code-block's codewords
length() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
Returns the number of bytes currently in the FileChannel.
length() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
Returns the number of bytes currently in the FileChannel.
length() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
length() - Method in class com.sun.media.imageio.stream.SegmentedImageInputStream
 
length - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
Box length, extra length, type and content data array
length() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
Returns the length of the data stream.
length() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
Returns the current length of the stream, in bytes, taking into account any buffering.
length() - Method in interface jj2000.j2k.io.RandomAccessIO
Returns the current length of the stream, in bytes, taking into account any buffering.
length() - Method in class jj2000.j2k.util.ISRandomAccessIO
Returns the length of the stream.
length() - Method in class loci.common.adapter.IRandomAccessAdapter.LegacyWrapper
 
length() - Method in class loci.common.adapter.IRandomAccessAdapter.ModernWrapper
 
length() - Method in class loci.common.ByteArrayHandle
 
length() - Method in class loci.common.FileHandle
 
length() - Method in interface loci.common.IRandomAccess
Returns the length of this stream.
length() - Method in class loci.common.Location
 
length() - Method in class loci.common.NIOFileHandle
 
length() - Method in class loci.common.NIOInputStream
Gets the number of bytes in the file.
length() - Method in class loci.common.RandomAccessInputStream
Gets the number of bytes in the file.
length() - Method in class loci.common.RandomAccessOutputStream
Returns the length of the file.
length() - Method in class loci.common.StreamHandle
 
length() - Method in class loci.formats.cache.CacheStrategy
Shortcut for computing total number of positions.
length() - Method in class loci.formats.Modulo
 
LENGTH - Static variable in class loci.poi.hpsf.ClassID
The number of bytes occupied by this object in the byte stream.
length() - Method in class loci.poi.hpsf.ClassID
 
length() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
 
length() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath
 
Length - Class in mdbtools.dbengine.functions
Length is the sql length function When passed a string it returns the length of the string
Length() - Constructor for class mdbtools.dbengine.functions.Length
 
length() - Method in class mdbtools.examples.MemoryRandomAccess
 
length() - Method in class mdbtools.jdbc2.File
 
length() - Method in interface mdbtools.publicapi.RandomAccess
 
length() - Method in class ome.scifio.io.ByteArrayHandle
 
length() - Method in class ome.scifio.io.FileHandle
 
length() - Method in interface ome.scifio.io.IRandomAccess
Returns the length of this stream.
length() - Method in class ome.scifio.io.Location
 
length() - Method in class ome.scifio.io.NIOFileHandle
 
length() - Method in class ome.scifio.io.NIOInputStream
Gets the number of bytes in the file.
length - Variable in class ome.scifio.io.RandomAccessInputStream
 
length() - Method in class ome.scifio.io.RandomAccessInputStream
Gets the number of bytes in the file.
length() - Method in class ome.scifio.io.RandomAccessOutputStream
Returns the length of the file.
length - Variable in class ome.scifio.io.StreamHandle
Length of the stream.
length() - Method in class ome.scifio.io.StreamHandle
 
LENGTH_0 - Static variable in class loci.poi.hpsf.Variant
Denotes a variant type with a length of 0 bytes.
LENGTH_2 - Static variable in class loci.poi.hpsf.Variant
Denotes a variant type with a length of 2 bytes.
LENGTH_4 - Static variable in class loci.poi.hpsf.Variant
Denotes a variant type with a length of 4 bytes.
LENGTH_8 - Static variable in class loci.poi.hpsf.Variant
Denotes a variant type with a length of 8 bytes.
LENGTH_LAZY - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
Identifier for the lazy length calculation.
LENGTH_LAZY_GOOD - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
Identifier for a very simple length calculation.
LENGTH_NEAR_OPT - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
Identifier for the near optimal length calculation.
LENGTH_UNKNOWN - Static variable in class loci.poi.hpsf.Variant
Denotes a variant type with a length that is unknown to HPSF yet.
LENGTH_VARIABLE - Static variable in class loci.poi.hpsf.Variant
Denotes a variant type with a variable length.
lengths - Variable in class loci.formats.cache.CacheStrategy
Length of each dimensional axis.
LEO_TAG - Static variable in class loci.formats.in.LEOReader
 
LEOReader - Class in loci.formats.in
LEOReader is the file format reader for LEO EM files.
LEOReader() - Constructor for class loci.formats.in.LEOReader
Constructs a new LEO reader.
LESS_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
Less Dots
LESS_THAN - Static variable in class mdbtools.dbengine.sql.Equation
 
LESS_THAN_OR_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation
 
LessEqualPtg - Class in loci.poi.hssf.record.formula
Ptg class to implement less than or equal
LessEqualPtg() - Constructor for class loci.poi.hssf.record.formula.LessEqualPtg
Creates new LessEqualPtg
LessEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.LessEqualPtg
 
LessThanPtg - Class in loci.poi.hssf.record.formula
Less than operator PTG "<".
LessThanPtg() - Constructor for class loci.poi.hssf.record.formula.LessThanPtg
Constructor.
LessThanPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.LessThanPtg
Constructor.
LETTER_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
level - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
level - Variable in class jj2000.j2k.wavelet.Subband
The level in the tree to which this subband belongs, which is the number of wavelet decompositions performed to produce this subband.
lh - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
The subband masks of the child LH
libClass - Variable in class loci.plugins.config.LibraryEntry
 
LibraryChecker - Class in loci.plugins.util
Utility methods for verifying that classes are present and versions are correct.
LibraryChecker.Library - Enum in loci.plugins.util
List of possible libraries for which to check.
LibraryEntry - Class in loci.plugins.config
A list entry for the configuration window's Libraries tab.
LibraryEntry(PrintWriter, HashMap<String, String>) - Constructor for class loci.plugins.config.LibraryEntry
 
LibraryEntry(PrintWriter, String, String, String, String, String, String, String) - Constructor for class loci.plugins.config.LibraryEntry
 
license - Variable in class loci.plugins.config.LibraryEntry
 
LICENSE_PROPERTY - Static variable in class loci.formats.services.LuraWaveServiceImpl
System property to check for the LuraWave license code.
LIF_MAGIC_BYTE - Static variable in class loci.formats.in.LIFReader
 
LIF_MEMORY_BYTE - Static variable in class loci.formats.in.LIFReader
 
LIFETIME - Static variable in class loci.formats.FormatTools
Identifies the Lifetime dimensional type, representing a dimension consisting of a lifetime histogram.
LIFF_MAGIC_BYTES - Static variable in class loci.formats.in.OpenlabReader
 
LiFlimReader - Class in loci.formats.in
LiFlimReader is the file format reader for LI-FLIM files.
LiFlimReader() - Constructor for class loci.formats.in.LiFlimReader
Constructs a new LI-FLIM reader.
LIFReader - Class in loci.formats.in
LIFReader is the file format reader for Leica LIF files.
LIFReader() - Constructor for class loci.formats.in.LIFReader
Constructs a new Leica LIF reader.
LIGHT_SOURCE - Static variable in class loci.formats.tiff.IFD
 
LIGHT_SOURCE_CLOUDY_WEATHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_COOL_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_D50 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_D55 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_D65 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_D75 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_DAY_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_DAYLIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_DAYLIGHT_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_FINE_WEATHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_FLASH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_ISO_STUDIO_TUNGSTEN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_OTHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_SHADE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_STANDARD_LIGHT_A - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_STANDARD_LIGHT_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_STANDARD_LIGHT_C - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_TUNGSTEN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LIGHT_SOURCE_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "LightSource" tag.
LightEmittingDiode - Class in ome.xml.model
 
LightEmittingDiode() - Constructor for class ome.xml.model.LightEmittingDiode
Default constructor.
LightEmittingDiode(Element, OMEModel) - Constructor for class ome.xml.model.LightEmittingDiode
Constructs LightEmittingDiode recursively from an XML DOM tree.
LightEmittingDiode(LightEmittingDiode) - Constructor for class ome.xml.model.LightEmittingDiode
Copy constructor.
LightPath - Class in ome.xml.model
 
LightPath() - Constructor for class ome.xml.model.LightPath
Default constructor.
LightPath(Element, OMEModel) - Constructor for class ome.xml.model.LightPath
Constructs LightPath recursively from an XML DOM tree.
LightPath(LightPath) - Constructor for class ome.xml.model.LightPath
Copy constructor.
LightSource - Class in ome.xml.model
 
LightSource() - Constructor for class ome.xml.model.LightSource
Default constructor.
LightSource(Element, OMEModel) - Constructor for class ome.xml.model.LightSource
Constructs LightSource recursively from an XML DOM tree.
LightSource(LightSource) - Constructor for class ome.xml.model.LightSource
Copy constructor.
LightSourceSettings - Class in ome.xml.model
 
LightSourceSettings() - Constructor for class ome.xml.model.LightSourceSettings
Default constructor.
LightSourceSettings(Element, OMEModel) - Constructor for class ome.xml.model.LightSourceSettings
Constructs LightSourceSettings recursively from an XML DOM tree.
LightSourceSettings(LightSourceSettings) - Constructor for class ome.xml.model.LightSourceSettings
Copy constructor.
LIMReader - Class in loci.formats.in
LIMReader is the file format reader for Laboratory Imaging/Nikon LIM files.
LIMReader() - Constructor for class loci.formats.in.LIMReader
Constructs a new LIM reader.
Line - Class in ome.xml.model
 
Line() - Constructor for class ome.xml.model.Line
Default constructor.
Line(Element, OMEModel) - Constructor for class ome.xml.model.Line
Constructs Line recursively from an XML DOM tree.
Line(Line) - Constructor for class ome.xml.model.Line
Copy constructor.
LINE_OF_STRAIGHT_SEGMENTS - Static variable in class loci.poi.ddf.EscherShapePathProperty
 
LINE_PATTERN_DARK_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_DASH - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_DASH_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_LIGHT_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_MEDIUM_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_NONE - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_SOLID - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LineCap - Enum in ome.xml.model.enums
 
LineCapEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for LineCap.
LineCapEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LineCapEnumHandler
 
linediv - Variable in class loci.formats.in.SDTInfo
Line predivider = 2 ** (linediv).
LineFormatRecord - Class in loci.poi.hssf.record
Describes a line format record.
LineFormatRecord() - Constructor for class loci.poi.hssf.record.LineFormatRecord
 
LineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LineFormatRecord
Constructs a LineFormat record and sets its fields appropriately.
LineShape - Class in loci.poi.hssf.model
Represents a line shape and creates all the line specific low level records.
LINESTYLE__ANYLINE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__ARROWHEADSOK - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__BACKCOLOR - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__COLOR - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__CRMOD - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLBLIP - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLBLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLBLIPNAME - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLDZTYPE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLHEIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLWIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__HITLINETEST - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEDASHING - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEDASHSTYLE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEENDARROWHEAD - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEENDARROWLENGTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEENDARROWWIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEENDCAPSTYLE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEESTARTARROWLENGTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEFILLSHAPE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEJOINSTYLE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEMITERLIMIT - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINESTARTARROWHEAD - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINESTARTARROWWIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINESTYLE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINETYPE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEWIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__NOLINEDRAWDASH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__OPACITY - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE_DASHDOTDOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DASHDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DASHDOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DASHGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DASHSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_LONGDASHDOTDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_LONGDASHDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_LONGDASHGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_SOLID - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
lineTo(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
LINEWIDTH_DEFAULT - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINEWIDTH_ONE_PT - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.AbstractOMEModelObject
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.AffineTransform
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Annotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.AnnotationRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Arc
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BasicAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BinaryFile
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BinaryOnly
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BinData
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BooleanAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Channel
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ChannelRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.CommentAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Dataset
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.DatasetRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Detector
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.DetectorSettings
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Dichroic
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.DichroicRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.DoubleAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Ellipse
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.EmissionFilterRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExcitationFilterRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Experiment
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Experimenter
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterGroup
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterGroupRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimentRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.External
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Filament
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.FileAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Filter
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterSet
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterSetRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Image
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ImageRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ImagingEnvironment
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Instrument
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.InstrumentRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Label
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Laser
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Leader
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LightEmittingDiode
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LightPath
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LightSource
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LightSourceSettings
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Line
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ListAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LongAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ManufacturerSpec
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Mask
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.MetadataOnly
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.MicrobeamManipulation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.MicrobeamManipulationRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Microscope
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.NumericAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Objective
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ObjectiveSettings
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.OME
 
link(Reference, OMEModelObject) - Method in interface ome.xml.model.OMEModelObject
Link a given OME model object to this model object.
link(Reference, OMEModelObject) - Method in class ome.xml.model.Pixels
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Plane
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Plate
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.PlateAcquisition
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.PlateRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Point
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Polygon
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Polyline
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Project
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ProjectRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Pump
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Reagent
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ReagentRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Rectangle
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Reference
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Rights
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ROI
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ROIRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Screen
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Settings
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Shape
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.StageLabel
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.StructuredAnnotations
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TagAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TermAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TextAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TiffData
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TimestampAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TransmittanceRange
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TypeAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Union
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.UUID
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Well
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.WellSample
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.WellSampleRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.XMLAnnotation
 
LINK_TYPE_CATEGORIES - Static variable in class loci.poi.hssf.record.LinkedDataRecord
 
LINK_TYPE_TITLE_OR_TEXT - Static variable in class loci.poi.hssf.record.LinkedDataRecord
 
LINK_TYPE_VALUES - Static variable in class loci.poi.hssf.record.LinkedDataRecord
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Annotation
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Channel
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Dataset
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Experimenter
 
linkAnnotation(Annotation) - Method in class ome.xml.model.ExperimenterGroup
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Image
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Pixels
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Plane
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Plate
 
linkAnnotation(Annotation) - Method in class ome.xml.model.PlateAcquisition
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Project
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Reagent
 
linkAnnotation(Annotation) - Method in class ome.xml.model.ROI
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Screen
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Well
 
linkAnnotation(Annotation) - Method in class ome.xml.model.WellSample
 
linkChannel(Channel) - Method in class ome.xml.model.Annotation
 
linkChannel(Channel) - Method in class ome.xml.model.FilterSet
 
linkDataset(Dataset) - Method in class ome.xml.model.Annotation
 
linkDataset(Dataset) - Method in class ome.xml.model.Experimenter
 
linkDataset(Dataset) - Method in class ome.xml.model.ExperimenterGroup
 
linkDataset(Dataset) - Method in class ome.xml.model.Image
 
linkDataset(Dataset) - Method in class ome.xml.model.Project
 
linkDichroic(Dichroic) - Method in class ome.xml.model.FilterSet
 
linkDichroic(Dichroic) - Method in class ome.xml.model.LightPath
 
LinkedDataFormulaField - Class in loci.poi.hssf.record
Not implemented yet.
LinkedDataFormulaField() - Constructor for class loci.poi.hssf.record.LinkedDataFormulaField
 
LinkedDataRecord - Class in loci.poi.hssf.record
Describes a linked data record.
LinkedDataRecord() - Constructor for class loci.poi.hssf.record.LinkedDataRecord
 
LinkedDataRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LinkedDataRecord
Constructs a LinkedData record and sets its fields appropriately.
linkEmissionFilter(Filter) - Method in class ome.xml.model.FilterSet
 
linkEmissionFilter(Filter) - Method in class ome.xml.model.LightPath
 
linkExcitationFilter(Filter) - Method in class ome.xml.model.FilterSet
 
linkExcitationFilter(Filter) - Method in class ome.xml.model.LightPath
 
linkExperiment(Experiment) - Method in class ome.xml.model.Experimenter
 
linkExperiment(Experiment) - Method in class ome.xml.model.Image
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Annotation
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Dataset
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Experiment
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.ExperimenterGroup
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Image
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.MicrobeamManipulation
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Project
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Annotation
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Dataset
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Experimenter
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Image
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Leader
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Project
 
linkFilterSet(FilterSet) - Method in class ome.xml.model.Channel
 
linkFilterSet(FilterSet) - Method in class ome.xml.model.Dichroic
 
linkFilterSetEmissionFilter(FilterSet) - Method in class ome.xml.model.Filter
 
linkFilterSetExcitationFilter(FilterSet) - Method in class ome.xml.model.Filter
 
linkImage(Image) - Method in class ome.xml.model.Annotation
 
linkImage(Image) - Method in class ome.xml.model.Dataset
 
linkImage(Image) - Method in class ome.xml.model.Experiment
 
linkImage(Image) - Method in class ome.xml.model.Experimenter
 
linkImage(Image) - Method in class ome.xml.model.ExperimenterGroup
 
linkImage(Image) - Method in class ome.xml.model.Instrument
 
linkImage(Image) - Method in class ome.xml.model.MicrobeamManipulation
 
linkImage(Image) - Method in class ome.xml.model.ROI
 
linkImage(Image) - Method in class ome.xml.model.WellSample
 
linkInstrument(Instrument) - Method in class ome.xml.model.Image
 
linkLaser(Laser) - Method in class ome.xml.model.Pump
 
linkLeader(Experimenter) - Method in class ome.xml.model.ExperimenterGroup
 
linkLightPath(LightPath) - Method in class ome.xml.model.Dichroic
 
linkLightPathEmissionFilter(LightPath) - Method in class ome.xml.model.Filter
 
linkLightPathExcitationFilter(LightPath) - Method in class ome.xml.model.Filter
 
linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experimenter
 
linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Image
 
linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.ROI
 
linkPixels(Pixels) - Method in class ome.xml.model.Annotation
 
linkPlane(Plane) - Method in class ome.xml.model.Annotation
 
linkPlate(Plate) - Method in class ome.xml.model.Annotation
 
linkPlate(Plate) - Method in class ome.xml.model.Screen
 
linkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Annotation
 
linkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.WellSample
 
linkProject(Project) - Method in class ome.xml.model.Annotation
 
linkProject(Project) - Method in class ome.xml.model.Dataset
 
linkProject(Project) - Method in class ome.xml.model.Experimenter
 
linkProject(Project) - Method in class ome.xml.model.ExperimenterGroup
 
linkPump(LightSource) - Method in class ome.xml.model.Laser
 
linkReagent(Reagent) - Method in class ome.xml.model.Annotation
 
linkReagent(Reagent) - Method in class ome.xml.model.Well
 
linkROI(ROI) - Method in class ome.xml.model.Annotation
 
linkROI(ROI) - Method in class ome.xml.model.Image
 
linkROI(ROI) - Method in class ome.xml.model.MicrobeamManipulation
 
linkScreen(Screen) - Method in class ome.xml.model.Annotation
 
linkScreen(Screen) - Method in class ome.xml.model.Plate
 
linkWell(Well) - Method in class ome.xml.model.Annotation
 
linkWell(Well) - Method in class ome.xml.model.Reagent
 
linkWellSample(WellSample) - Method in class ome.xml.model.Annotation
 
linkWellSample(WellSample) - Method in class ome.xml.model.Image
 
linkWellSample(WellSample) - Method in class ome.xml.model.PlateAcquisition
 
list - Variable in class loci.common.IniList
 
list(boolean) - Method in class loci.common.Location
Return a list of all of the files in this directory.
list() - Method in class loci.common.Location
Return a list of file names in this directory.
list(boolean) - Method in class ome.scifio.io.Location
Return a list of all of the files in this directory.
list() - Method in class ome.scifio.io.Location
Return a list of file names in this directory.
List2d - Class in loci.poi.util
Provides an interface for interacting with 2d arrays of objects.
List2d() - Constructor for class loci.poi.util.List2d
 
ListAnnotation - Class in ome.xml.model
 
ListAnnotation() - Constructor for class ome.xml.model.ListAnnotation
Default constructor.
ListAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.ListAnnotation
Constructs ListAnnotation recursively from an XML DOM tree.
ListAnnotation(ListAnnotation) - Constructor for class ome.xml.model.ListAnnotation
Copy constructor.
listeners - Variable in class loci.formats.cache.Cache
List of cache event listeners.
listeners - Variable in class loci.formats.cache.CacheStrategy
List of cache event listeners.
listeners - Variable in class loci.plugins.in.ImagePlusReader
 
listeners() - Method in class loci.poi.hssf.eventmodel.EventRecordFactory
used for unit tests to test the registration of record listeners.
listFiles() - Method in class loci.common.Location
Return a list of absolute files in this directory.
listFiles() - Method in class ome.scifio.io.Location
Return a list of absolute files in this directory.
listing - Variable in class ome.scifio.io.Location.ListingsResult
 
listIterator() - Method in class loci.common.IniList
 
listIterator(int) - Method in class loci.common.IniList
 
ListManagedBlock - Interface in loci.poi.poifs.storage
An interface for blocks managed by a list that works with a BlockAllocationTable to keep block sequences straight
LITTLE - Static variable in class loci.formats.tiff.TiffConstants
 
LITTLE_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType
Identifier for little-endian byte ordering (i.e.
LITTLE_ENDIAN - Static variable in class loci.formats.tiff.IFD
 
littleEndian - Variable in class loci.formats.codec.CodecOptions
Indicates endianness of pixel data.
littleEndian - Variable in class loci.formats.CoreMetadata
Indicates whether or not each pixel's bytes are in little endian order.
littleEndian - Variable in class loci.formats.tools.AmiraParameters
 
LittleEndian - Class in loci.poi.util
a utility class for handling little-endian numbers, which the 80x86 world is replete with.
LittleEndian.BufferUnderrunException - Exception in loci.poi.util
Exception to handle buffer underruns
LittleEndianConsts - Interface in loci.poi.util
a repository for constants shared by classes within this package
ll - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
The subband masks of the child LL
LM_DOMAIN - Static variable in class loci.formats.FormatTools
Identifies the light microscopy domain.
LoadData - Class in mdbtools.dbengine.tasks
Load any data from a table into data
LoadData(Table) - Constructor for class mdbtools.dbengine.tasks.LoadData
 
LOADER - Static variable in class loci.formats.gui.LegacyQTTools
This custom class loader searches additional paths for the QTJava.zip library.
loader - Variable in class loci.formats.gui.PreviewPane
Thumbnail loading thread.
loader - Variable in class ome.scifio.common.ReflectedUniverse
Class loader for imported classes.
loaderAlive - Variable in class loci.formats.gui.PreviewPane
Flag indicating whether loader thread should keep running.
loadId - Variable in class loci.formats.gui.PreviewPane
Current ID to load.
loadImage(Image) - Static method in class loci.formats.gui.AWTImageTools
Ensures the given AWT image is fully loaded.
loadLibrary() - Static method in class jj2000.j2k.util.NativeServices
Loads the shared library implementing the native methods of this class and returns true on success.
loadMemo() - Method in class loci.formats.Memoizer
 
loadOption() - Method in class loci.plugins.prefs.BooleanOption
 
loadOption() - Method in class loci.plugins.prefs.DoubleOption
 
loadOption() - Method in class loci.plugins.prefs.Option
Loads the option's value from the ImageJ preferences file.
loadOption() - Method in class loci.plugins.prefs.StringOption
 
loadOptions() - Method in class loci.plugins.prefs.OptionsList
Loads option values from the ImageJ preferences file.
loadReader() - Method in interface loci.formats.Memoizer.Deser
 
loadReader() - Method in class loci.formats.Memoizer.KryoDeser
 
loadReleaseVersion() - Method in interface loci.formats.Memoizer.Deser
 
loadReleaseVersion() - Method in class loci.formats.Memoizer.KryoDeser
 
loadRevision() - Method in interface loci.formats.Memoizer.Deser
 
loadRevision() - Method in class loci.formats.Memoizer.KryoDeser
 
loadStart(File) - Method in interface loci.formats.Memoizer.Deser
 
loadStart(File) - Method in class loci.formats.Memoizer.KryoDeser
 
loadStop() - Method in interface loci.formats.Memoizer.Deser
 
loadStop() - Method in class loci.formats.Memoizer.KryoDeser
 
loadThumb(BufferedImageReader, int, Panel, boolean) - Static method in class loci.plugins.in.ThumbLoader
 
loadVersion() - Method in interface loci.formats.Memoizer.Deser
 
loadVersion() - Method in class loci.formats.Memoizer.KryoDeser
 
loc - Variable in class loci.common.Location
 
localColorTable - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
Location - Class in loci.common
A legacy delegator class for ome.scifio.io.Location.
Location(String) - Constructor for class loci.common.Location
 
Location(File) - Constructor for class loci.common.Location
 
Location(String, String) - Constructor for class loci.common.Location
 
Location(Location, String) - Constructor for class loci.common.Location
 
Location() - Constructor for class loci.common.Location
 
Location - Class in ome.scifio.io
Pseudo-extension of java.io.File that supports reading over HTTP.
Location(String) - Constructor for class ome.scifio.io.Location
 
Location(File) - Constructor for class ome.scifio.io.Location
 
Location(String, String) - Constructor for class ome.scifio.io.Location
 
Location(Location, String) - Constructor for class ome.scifio.io.Location
 
Location.ListingsResult - Class in ome.scifio.io
 
LOCATION_HTTP - Static variable in class loci.plugins.in.ImporterOptions
 
LOCATION_LOCAL - Static variable in class loci.plugins.in.ImporterOptions
 
LOCATION_OMERO - Static variable in class loci.plugins.in.ImporterOptions
 
LocationDialog - Class in loci.plugins.in
Bio-Formats Importer location chooser dialog box.
LocationDialog(ImportProcess) - Constructor for class loci.plugins.in.LocationDialog
Creates a location chooser dialog for the Bio-Formats Importer.
loci.common - package loci.common
 
loci.common.adapter - package loci.common.adapter
 
loci.common.enumeration - package loci.common.enumeration
 
loci.common.services - package loci.common.services
 
loci.common.xml - package loci.common.xml
 
loci.formats - package loci.formats
Bio-Formats: a library for reading and writing popular microscopy file formats.
loci.formats.cache - package loci.formats.cache
Package containing Bio-Formats caching logic, for managing subsets of large collections of image planes in memory.
loci.formats.codec - package loci.formats.codec
Package containing Bio-Formats compression and decompression logic.
loci.formats.gui - package loci.formats.gui
Package containing Bio-Formats graphical user interface code.
loci.formats.in - package loci.formats.in
Package containing Bio-Formats file format readers.
loci.formats.itk - package loci.formats.itk
 
loci.formats.meta - package loci.formats.meta
Package containing core Bio-Formats metadata interfaces for the OME data model.
loci.formats.ome - package loci.formats.ome
Package containing Bio-Formats OME-related logic for OME-XML metadata, and database import, upload and download.
loci.formats.out - package loci.formats.out
Package containing Bio-Formats file format writers.
loci.formats.services - package loci.formats.services
 
loci.formats.tiff - package loci.formats.tiff
Package containing Bio-Formats TIFF code of general utility.
loci.formats.tools - package loci.formats.tools
Package containing utility methods corresponding to the Bio-Formats command line tools.
loci.legacy.adapter - package loci.legacy.adapter
 
loci.ome.io - package loci.ome.io
OME I/O: a library for OME database import, upload and download.
loci.ome.io.services - package loci.ome.io.services
 
loci.plugins - package loci.plugins
LOCI Plugins: a collection of plugins for ImageJ, including the Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, Data Browser and Stack Slicer.
loci.plugins.config - package loci.plugins.config
LOCI Plugins Configuration plugin for ImageJ.
loci.plugins.in - package loci.plugins.in
Bio-Formats Importer plugin for ImageJ.
loci.plugins.macro - package loci.plugins.macro
Bio-Formats Macro Extensions plugin for ImageJ.
loci.plugins.ome - package loci.plugins.ome
OME Plugins: a collection of plugins for ImageJ, including the Download from OME and Upload to OME plugins.
loci.plugins.out - package loci.plugins.out
Bio-Formats Exporter plugin for ImageJ.
loci.plugins.prefs - package loci.plugins.prefs
Classes for managing LOCI plugins preferences.
loci.plugins.shortcut - package loci.plugins.shortcut
LOCI Plugins Shortcut Window plugin for ImageJ.
loci.plugins.util - package loci.plugins.util
Utility classes and methods for the LOCI plugins for ImageJ.
loci.poi - package loci.poi
 
loci.poi.ddf - package loci.poi.ddf
This package contains classes for decoding the Microsoft Office Drawing format otherwise known as escher henceforth known in POI as the Dreadful Drawing Format.
loci.poi.dev - package loci.poi.dev
 
loci.poi.hpsf - package loci.poi.hpsf
loci.poi.hpsf.wellknown - package loci.poi.hpsf.wellknown
Specific support for DocumentSummaryInformation, SummaryInformation types.
loci.poi.hssf.dev - package loci.poi.hssf.dev
DEV package serves two purposes.
loci.poi.hssf.eventmodel - package loci.poi.hssf.eventmodel
 
loci.poi.hssf.eventusermodel - package loci.poi.hssf.eventusermodel
HSSF eventmodel Package provides an event-based API for reading HSSF files.
loci.poi.hssf.extractor - package loci.poi.hssf.extractor
 
loci.poi.hssf.model - package loci.poi.hssf.model
Provides low level API structures for reading, writing, modifying XLS files.
loci.poi.hssf.record - package loci.poi.hssf.record
Record package contains class representations for XLS binary strutures.
loci.poi.hssf.record.aggregates - package loci.poi.hssf.record.aggregates
record aggregates are not real "records" but collections of records that act as a single record.
loci.poi.hssf.record.formula - package loci.poi.hssf.record.formula
formula package contains binary PTG structures used in Formulas
loci.poi.hssf.usermodel - package loci.poi.hssf.usermodel
usermodel package maps HSSF low level strutures to familiar workbook/sheet model
loci.poi.hssf.util - package loci.poi.hssf.util
util package contains tools needed for writing HSSF files that are not necesarily "real" HSSF concepts.
loci.poi.poifs.common - package loci.poi.poifs.common
common package contains constants and other classes shared across all POIFS subpackages
loci.poi.poifs.dev - package loci.poi.poifs.dev
DEV package serves two purposes.
loci.poi.poifs.eventfilesystem - package loci.poi.poifs.eventfilesystem
The eventfilesystem is an efficient method for reading OLE 2 CDF files.
loci.poi.poifs.filesystem - package loci.poi.poifs.filesystem
filesystem package maps OLE 2 Compound document files to a more familiar filesystem interface.
loci.poi.poifs.property - package loci.poi.poifs.property
property package contains high and low level Property structures for POIFS.
loci.poi.poifs.storage - package loci.poi.poifs.storage
storage package contains low level binary structures for POIFS's implementation of the OLE 2 Compound Document Format.
loci.poi.util - package loci.poi.util
Top-level util package are classes that are useful throughout the project.
loci.tests - package loci.tests
Base package for automated and manual testing of the LOCI software packages.
loci.tests.testng - package loci.tests.testng
Package for automated testing of the LOCI software packages using TestNG.
loci.utils - package loci.utils
 
LociConfig - Class in loci.plugins.config
An ImageJ plugin for displaying the LOCI plugins configuration dialog.
LociConfig() - Constructor for class loci.plugins.config.LociConfig
 
LociExporter - Class in loci.plugins
ImageJ plugin for writing files using the OME Bio-Formats package.
LociExporter() - Constructor for class loci.plugins.LociExporter
 
LociFunctions - Class in loci.plugins.macro
This class provides macro extensions for ImageJ for Bio-Formats and other LOCI tools.
LociFunctions() - Constructor for class loci.plugins.macro.LociFunctions
 
LociImporter - Class in loci.plugins
ImageJ plugin for reading files using the OME Bio-Formats package.
LociImporter() - Constructor for class loci.plugins.LociImporter
 
LociInstaller - Class in loci.plugins.config
An ImageJ plugin for installing and upgrading libraries related to the LOCI plugins.
LociInstaller() - Constructor for class loci.plugins.config.LociInstaller
 
LociPrefs - Class in loci.plugins.util
Utility methods for ImageJ preferences for LOCI plugins.
LociUploader - Class in loci.plugins.ome
ImageJ plugin for uploading images to an OME server.
LociUploader() - Constructor for class loci.plugins.ome.LociUploader
 
LOG - Static variable in interface jj2000.j2k.util.MsgLogger
Severity of message.
log() - Method in class loci.plugins.util.RecordedImageProcessor
 
log(int, Object) - Method in class loci.poi.util.CommonsLogger
Log a message
log(int, Object) - Method in class loci.poi.util.NullLogger
Log a message
log(int, Object, Object) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Throwable) - Method in class loci.poi.util.NullLogger
Log a message
log(int, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger
Log a message.
log(int, Object) - Method in class loci.poi.util.POILogger
 
log(int, Object, Object) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Throwable) - Method in class loci.poi.util.POILogger
Log a message
log(int, Object, Object, Throwable) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger
Log a message.
log(int, Object) - Method in class loci.poi.util.SystemOutLogger
Log a message
log2(int) - Static method in class jj2000.j2k.util.MathUtil
Method that calculates the floor of the log, base 2, of 'x'.
Log4jTools - Class in ome.scifio.common
A utility class with convenience methods for log4j.
LogbackTools - Class in ome.scifio.common
A utility class with convenience methods for logback.
logFormatted(int, String, Object) - Method in class loci.poi.util.NullLogger
Logs a formated message.
logFormatted(int, String, Object, Object) - Method in class loci.poi.util.NullLogger
Logs a formated message.
logFormatted(int, String, Object, Object, Object) - Method in class loci.poi.util.NullLogger
Logs a formated message.
logFormatted(int, String, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger
Logs a formated message.
logFormatted(int, String, Object) - Method in class loci.poi.util.POILogger
Logs a formated message.
logFormatted(int, String, Object, Object) - Method in class loci.poi.util.POILogger
Logs a formated message.
logFormatted(int, String, Object, Object, Object) - Method in class loci.poi.util.POILogger
Logs a formated message.
logFormatted(int, String, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger
Logs a formated message.
LOGGER - Static variable in class loci.formats.codec.BaseCodec
 
LOGGER - Static variable in class loci.formats.codec.JPEGTileDecoder
 
LOGGER - Static variable in class loci.formats.FormatHandler
 
LOGGER - Static variable in class loci.formats.FormatTools
 
LOGGER - Static variable in class loci.formats.in.BaseTiffReader
Logger for this class.
LOGGER - Static variable in class loci.formats.ome.AbstractOMEXMLMetadata
 
logger - Variable in class loci.poi.POIDocument
For our own logging use
logicalScreenHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
logicalScreenWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
login(OMECredentials) - Static method in class loci.ome.io.OMEUtils
Login to an OME/OMERO server.
logout(boolean) - Static method in class loci.ome.io.OMEUtils
Log out of OME/OMERO server.
logout() - Method in class loci.plugins.ome.OMEPlugin
Logout of OME database
LONG_DATE_FORMAT - Static variable in class loci.formats.in.MetamorphReader
 
LONG_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
 
LongAnnotation - Class in ome.xml.model
 
LongAnnotation() - Constructor for class ome.xml.model.LongAnnotation
Default constructor.
LongAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.LongAnnotation
Constructs LongAnnotation recursively from an XML DOM tree.
LongAnnotation(LongAnnotation) - Constructor for class ome.xml.model.LongAnnotation
Copy constructor.
LongField - Class in loci.poi.util
representation of a long (16-bit) field at a fixed location within a byte array
LongField(int) - Constructor for class loci.poi.util.LongField
construct the LongField with its offset into its containing byte array
LongField(int, long) - Constructor for class loci.poi.util.LongField
construct the LongField with its offset into its containing byte array and initialize its value
LongField(int, byte[]) - Constructor for class loci.poi.util.LongField
Construct the LongField with its offset into its containing byte array and initialize its value from its byte array
LongField(int, long, byte[]) - Constructor for class loci.poi.util.LongField
construct the LongField with its offset into its containing byte array, initialize its value, and write the value to a byte array
LONGITUDE_REF_EAST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSLongitudeRef" and "GPSDestLongitudeRef" tags.
LONGITUDE_REF_WEST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSLongitudeRef" and "GPSDestLongitudeRef" tags.
longsToBytes(long[], boolean) - Static method in class loci.common.DataTools
Translates an array of long values into an array of byte values.
longsToBytes(long[], boolean) - Static method in class ome.scifio.common.DataTools
Translates an array of long values into an array of byte values.
longToBytes(long, boolean) - Static method in class loci.common.DataTools
Translates the long value into an array of eight bytes.
longToBytes(long, boolean) - Static method in class ome.scifio.common.DataTools
Translates the long value into an array of eight bytes.
longValue() - Method in class loci.formats.tiff.TiffRational
Returns the value of the specified number as a long.
lookup - Variable in class loci.formats.in.PictReader
Color lookup table for palette color images.
lookupIndex(String) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
lookupName(short) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
lossless - Variable in class loci.formats.codec.CodecOptions
Used with codecs allowing lossy and lossless compression.
LosslessJPEGCodec - Class in loci.formats.codec
Decompresses lossless JPEG images.
LosslessJPEGCodec() - Constructor for class loci.formats.codec.LosslessJPEGCodec
 
LOW_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy
 
Lower - Class in mdbtools.dbengine.functions
 
Lower() - Constructor for class mdbtools.dbengine.functions.Lower
 
lpoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
 
lqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC
 
lqcd - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD
 
lrgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN
 
lrxs - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask
The lower right x coordinates of the applicable ROIs
lrys - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask
The lower right y coordinates of the applicable ROIs
lsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
lsot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT
 
LUMA_BLUE - Static variable in enum loci.formats.tiff.PhotoInterp
 
LUMA_GREEN - Static variable in enum loci.formats.tiff.PhotoInterp
 
LUMA_RED - Static variable in enum loci.formats.tiff.PhotoInterp
Default luminance values for YCbCr data.
LuraWave - Class in loci.plugins.util
Utility methods for dealing with proprietary LuraWave licensing.
LuraWaveCodec - Class in loci.formats.codec
This class provides LuraWave decompression, using LuraWave's Java decoding library.
LuraWaveCodec() - Constructor for class loci.formats.codec.LuraWaveCodec
 
LuraWaveService - Interface in loci.formats.services
Source code: Trac, Gitweb
LuraWaveServiceImpl - Class in loci.formats.services
Source code: Trac, Gitweb
LuraWaveServiceImpl() - Constructor for class loci.formats.services.LuraWaveServiceImpl
Default constructor.
LUT_LENGTH - Static variable in class loci.formats.in.BioRadReader
 
lutLength - Variable in class loci.formats.ChannelFiller
Number of LUT components.
lvls - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder
The number of levels in the tag tree
lvls - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder
The number of levels in the tag tree
lw - Variable in class jj2000.j2k.util.MsgPrinter
The line width to use
lwfDecoder - Class in com.luratech.lwf
Stub of the Luratech LuraWave® Java decoder class.
lwfDecoder(InputStream, String, String) - Constructor for class com.luratech.lwf.lwfDecoder
 
LY_RES_COMP_POS_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType
The bit stream is Layer/Resolution/Component/Position progressive : 0
lye - Variable in class jj2000.j2k.entropy.Progression
The index of the last layer.
lyepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
 
LZOCodec - Class in loci.formats.codec
This class implements LZO decompression.
LZOCodec() - Constructor for class loci.formats.codec.LZOCodec
 
LZWCodec - Class in loci.formats.codec
This is an optimized LZW codec for use with TIFF files.
LZWCodec() - Constructor for class loci.formats.codec.LZWCodec
 
LZWCompressor - Class in com.sun.media.imageioimpl.common
Modified from original LZWCompressor to change interface to passing a buffer of data to be compressed.
LZWCompressor(ImageOutputStream, int, boolean) - Constructor for class com.sun.media.imageioimpl.common.LZWCompressor
 
LZWStringTable - Class in com.sun.media.imageioimpl.common
General purpose LZW String Table.
LZWStringTable() - Constructor for class com.sun.media.imageioimpl.common.LZWStringTable
Constructor allocate memory for string store data

M

m - Variable in class jj2000.j2k.entropy.CodedCBlk
The vertical index of the code-block, within the subband.
m - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
The vertical index of the code-block, within the subband
MAC_OS_X - Static variable in class loci.formats.gui.LegacyQTTools
 
MacroFunctions - Class in loci.plugins.macro
Convenience class that simplifies implemention of ImageJ macro extensions.
MacroFunctions() - Constructor for class loci.plugins.macro.MacroFunctions
 
macros - Class in mdbtools.libmdb
 
macros() - Constructor for class mdbtools.libmdb.macros
 
magbits - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
The number of magnitude bits in the integer representation.
magbits - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn
The number of magnitude bits
MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants
 
main(String[]) - Static method in class loci.common.ReflectedUniverse
Allows exploration of a reflected universe in an interactive environment.
main(String[]) - Static method in class loci.formats.AxisGuesser
Method for testing pattern guessing logic.
main(String[]) - Static method in class loci.formats.codec.BitBuffer
Testing method.
main(String[]) - Static method in class loci.formats.codec.BitWriter
Tests the BitWriter class.
main(String[]) - Static method in class loci.formats.FilePattern
Method for testing file pattern logic.
main(String[]) - Static method in class loci.formats.gui.DataConverter
 
main(String[]) - Static method in class loci.formats.gui.ImageViewer
 
main(String[]) - Static method in class loci.formats.gui.XMLWindow
 
main(String[]) - Static method in class loci.formats.in.CellVoyagerReader
 
main(String[]) - Static method in class loci.formats.itk.ITKBridgePipes
 
main(String[]) - Static method in class loci.formats.ome.OmeisImporter
Deprecated.
Run ./omebf with a list of file IDs to import those IDs.
main(String[]) - Static method in class loci.formats.tools.AmiraParameters
 
main(String[]) - Static method in class loci.formats.tools.BioFormatsExtensionPrinter
 
main(String[]) - Static method in class loci.formats.tools.CacheConsole
Interactive interpreter for testing Bio-Formats caching implementation.
main(String[]) - Static method in class loci.formats.tools.EditTiffG
 
main(String[]) - Static method in class loci.formats.tools.MakeDatasetStructureTable
 
main(String[]) - Static method in class loci.formats.tools.MakeTestOmeTiff
 
main(String[]) - Static method in class loci.formats.tools.PrintDomains
 
main(String[]) - Static method in class loci.formats.tools.PrintFormatTable
 
main(String[]) - Static method in class loci.formats.tools.TiffComment
 
main(String[]) - Static method in class loci.formats.tools.UpgradeCheck
 
main(String[]) - Static method in class loci.formats.tools.XMLIndent
 
main(String[]) - Static method in class loci.formats.tools.XMLValidate
 
main(String[]) - Static method in class loci.ome.io.OmeroReader
A simple command line tool for downloading images from OMERO.
main(String[]) - Static method in class loci.ome.io.OMEWriter
 
main(String[]) - Static method in class loci.plugins.About
 
main(String[]) - Static method in class loci.plugins.config.LociConfig
 
main(String[]) - Static method in class loci.plugins.in.Importer
Main method, for testing.
main(String[]) - Static method in class loci.plugins.ome.About
 
main(String[]) - Static method in class loci.poi.ddf.EscherDump
A simple test stub.
main(String[]) - Static method in class loci.poi.dev.RecordGenerator
The main program for the RecordGenerator class
main(String[]) - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap
For the most basic testing.
main(String[]) - Static method in class loci.poi.hssf.dev.BiffViewer
Method main with 1 argument just run straight biffview against given file
main(String[]) - Static method in class loci.poi.hssf.dev.EFBiffViewer
 
main(String[]) - Static method in class loci.poi.hssf.dev.FormulaViewer
Method main pass me a filename and I'll try and parse the formulas from it
main(String[]) - Static method in class loci.poi.hssf.dev.HSSF
Method main Given 1 argument takes that as the filename, inputs it and dumps the cell values/types out to sys.out given 2 arguments where the second argument is the word "write" and the first is the filename - writes out a sample (test) spreadsheet (see public HSSF(String filename, boolean write)).
main - Variable in class loci.poi.hssf.record.PageBreakRecord.Break
 
main(String[]) - Static method in class loci.poi.hssf.record.RKRecord
Debugging main()
main(String[]) - Static method in class loci.poi.poifs.dev.POIFSViewer
Display the contents of multiple POIFS files
main(String[]) - Static method in class loci.poi.poifs.eventfilesystem.POIFSReader
read in files
main(String[]) - Static method in class loci.poi.poifs.filesystem.POIFSFileSystem
read in a file and write it back out again
main(String[]) - Static method in class loci.poi.util.DrawingDump
 
main(String[]) - Static method in class loci.poi.util.HexDump
 
main(String[]) - Static method in class loci.tests.ImageTester
 
main(String[]) - Static method in class loci.tests.IOTester
 
main(String[]) - Static method in class loci.tests.OmeroReaderTest
 
main(String[]) - Static method in class loci.tests.SingularityTest
 
main(String[]) - Static method in class loci.tests.ZipTester
 
main(String[]) - Static method in class mdbtools.dbengine.Tests
 
main(String[]) - Static method in class mdbtools.examples.mdb_tables
 
main(String[]) - Static method in class mdbtools.libmdb06util.mdbver
 
main(String[]) - Static method in class mdbtools.mdb_export
 
main(String[]) - Static method in class mdbtools.mdb_schema
 
main(String[]) - Static method in class mdbtools.mdb_tables
 
main(String[]) - Static method in class mdbtools.tests.ColumnTest
 
main(String[]) - Static method in class ome.scifio.common.ReflectedUniverse
Allows exploration of a reflected universe in an interactive environment.
main_tagset - Variable in class loci.formats.in.ZeissTIFFHandler
 
MainDialog - Class in loci.plugins.in
Bio-Formats Importer general options dialog box.
MainDialog(ImportProcess) - Constructor for class loci.plugins.in.MainDialog
Creates a general options dialog for the Bio-Formats Importer.
mainHeadOff - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
The offset of the main header in the input stream
MAKE - Static variable in class loci.formats.tiff.IFD
 
make24Bits(Object, int, int, boolean, boolean) - Static method in class loci.formats.ImageTools
Convert an arbitrary primitive type array with 3 samples per pixel to a 3 x (width * height) byte array.
make24Bits(Object, int, int, boolean, boolean, Double, Double) - Static method in class loci.formats.ImageTools
Convert an arbitrary primitive type array with 3 samples per pixel to a 3 x (width * height) byte array.
make24Bits(Object, int, int, boolean) - Static method in class loci.formats.ImageTools
Convert an arbitrary primitive type array with 3 samples per pixel to an int array, i.e.
make24Bits(Object, int, int, boolean, Double, Double) - Static method in class loci.formats.ImageTools
Convert an arbitrary primitive type array with 3 samples per pixel to an int array, i.e.
makeBuffered(Image) - Static method in class loci.formats.gui.AWTImageTools
Creates a buffered image from the given AWT image object.
makeBuffered(Image, ColorModel) - Static method in class loci.formats.gui.AWTImageTools
Creates a buffered image possessing the given color model, from the specified AWT image object.
makeBufferedImageReader(IFormatReader) - Static method in class loci.formats.gui.BufferedImageReader
Converts the given reader into a BufferedImageReader, wrapping if needed.
makeBufferedImageWriter(IFormatWriter) - Static method in class loci.formats.gui.BufferedImageWriter
Converts the given writer into a BufferedImageWriter, wrapping if needed.
makeChannelFiller(IFormatReader) - Static method in class loci.formats.ChannelFiller
Converts the given reader into a ChannelFiller, wrapping if needed.
makeChannelMerger(IFormatReader) - Static method in class loci.formats.ChannelMerger
Converts the given reader into a ChannelMerger, wrapping if needed.
makeChannelSeparator(IFormatReader) - Static method in class loci.formats.ChannelSeparator
Converts the given reader into a ChannelSeparator, wrapping if needed.
makeColorModel(int, int) - Static method in class loci.formats.gui.AWTImageTools
Gets a color model for the given number of color components.
makeColorSpace(int) - Static method in class loci.formats.gui.AWTImageTools
Gets a color space for the given number of color components.
makeCompactGrid(Container, int, int, int, int, int, int) - Static method in class loci.plugins.config.SpringUtilities
Aligns the first rows * cols components of parent in a grid.
makeCompatible(BufferedImage, GraphicsConfiguration) - Static method in class loci.formats.gui.AWTImageTools
Creates a buffered image compatible with the given graphics configuration, using the given buffered image as a source.
makeDataArray(byte[], int, boolean, boolean) - Static method in class loci.common.DataTools
Convert a byte array to the appropriate 1D primitive type array.
makeDataArray(byte[], int, boolean, boolean, boolean) - Static method in class loci.common.DataTools
Deprecated.
makeDataArray(byte[], int, boolean, boolean) - Static method in class ome.scifio.common.DataTools
Convert a byte array to the appropriate 1D primitive type array.
makeDataArray(byte[], int, boolean, boolean, boolean) - Static method in class ome.scifio.common.DataTools
Deprecated.
makeDataArray2D(byte[], int, boolean, boolean, int) - Static method in class loci.common.DataTools
Convert a byte array to the appropriate 2D primitive type array.
makeDataArray2D(byte[], int, boolean, boolean, int) - Static method in class ome.scifio.common.DataTools
Convert a byte array to the appropriate 2D primitive type array.
MakeDatasetStructureTable - Class in loci.formats.tools
Utility class for generating a table containing the dataset structure for every supported format.
MakeDatasetStructureTable() - Constructor for class loci.formats.tools.MakeDatasetStructureTable
 
makeDimensionSwapper(IFormatReader) - Static method in class loci.formats.DimensionSwapper
Converts the given reader into a DimensionSwapper, wrapping if needed.
makeDummySlider() - Static method in class loci.plugins.util.DataBrowser
 
makeFilterMetadata() - Method in class loci.formats.FormatReader
Return a properly configured loci.formats.meta.FilterMetadata.
makeGrid(Container, int, int, int, int, int, int) - Static method in class loci.plugins.config.SpringUtilities
Aligns the first rows * cols components of parent in a grid.
makeHeavyPanel(Component) - Static method in class loci.plugins.util.DataBrowser
Makes AWT play nicely with Swing components.
makeImage(byte[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given single-channel byte data.
makeImage(short[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given single-channel short data.
makeImage(int[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given single-channel int data.
makeImage(float[], int, int) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given single-channel float data.
makeImage(double[], int, int) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given single-channel double data.
makeImage(byte[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given byte data.
makeImage(short[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given short data.
makeImage(int[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given int data.
makeImage(float[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given float data.
makeImage(double[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given double data.
makeImage(byte[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given byte data.
makeImage(short[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given short data.
makeImage(int[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given int data.
makeImage(float[][], int, int) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given single-precision floating point data.
makeImage(double[][], int, int) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given double-precision floating point data.
makeImage(byte[], boolean, MetadataRetrieve, int) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given raw byte array, obtaining the dimensional parameters from the specified metadata object.
makeImage(byte[], int, int, int, boolean, int, boolean, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given raw byte array, performing any necessary type conversions.
makeImage(byte[][], int, int, int, boolean, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools
Creates an image from the given raw byte array, performing any necessary type conversions.
makeImageProcessorReader(IFormatReader) - Static method in class loci.plugins.util.ImageProcessorReader
Converts the given reader into a ImageProcessorReader, wrapping if needed.
makeImageReader() - Static method in class loci.plugins.util.LociPrefs
Creates an image reader according to the current configuration settings, including which format readers are currently enabled, as well as format-specific configuration settings.
makeJTree(Document) - Static method in class loci.formats.gui.XMLCellRenderer
Constructs a Swing JTree that displays the given XML DOM document.
makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
This function generates the ROI mask for one tile-component.
makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator
This function generates the ROI mask for the entire tile.
makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator
This function generates the ROI mask for the entire tile.
makeMinMaxCalculator(IFormatReader) - Static method in class loci.formats.MinMaxCalculator
Converts the given reader into a MinMaxCalculator, wrapping if needed.
makeModuloElement(Document) - Method in class loci.formats.meta.ModuloAnnotation
 
makeOmeTiff(String...) - Method in class loci.formats.tools.MakeTestOmeTiff
 
makeOmeTiff(String, CoreMetadata) - Method in class loci.formats.tools.MakeTestOmeTiff
 
makeOriginalMetadata(Document) - Method in class loci.formats.meta.OriginalMetadataAnnotation
 
MAKER_NOTE - Static variable in class loci.formats.tiff.IFD
 
makeRGBImage(byte[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
 
makeRGBImage(byte[][], int, int) - Static method in class loci.formats.gui.AWTImageTools
 
makerNoteOffset - Variable in class loci.formats.in.NikonReader
Offset to the Nikon Maker Note.
makeSamples() - Method in class loci.formats.tools.MakeTestOmeTiff
 
makeSaneDimensionOrder(String) - Static method in class loci.formats.MetadataTools
Adjusts the given dimension order as needed so that it contains exactly one of each of the following characters: 'X', 'Y', 'Z', 'C', 'T'.
makeSigned(byte[]) - Static method in class loci.common.DataTools
 
makeSigned(short[]) - Static method in class loci.common.DataTools
 
makeSigned(int[]) - Static method in class loci.common.DataTools
 
makeSigned(byte[]) - Static method in class ome.scifio.common.DataTools
 
makeSigned(short[]) - Static method in class ome.scifio.common.DataTools
 
makeSigned(int[]) - Static method in class ome.scifio.common.DataTools
 
MakeTestOmeTiff - Class in loci.formats.tools
Creates sample OME-TIFF datasets according to the given parameters.
MakeTestOmeTiff() - Constructor for class loci.formats.tools.MakeTestOmeTiff
 
makeTextField() - Static method in class loci.plugins.config.ConfigWindow
 
makeTileStitcher(IFormatReader) - Static method in class loci.formats.TileStitcher
Converts the given reader into a TileStitcher, wrapping if needed.
makeUnsigned(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
Converts the given BufferedImage into an image with unsigned pixel data.
makeupCodes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Black and white make-up code table.
makeupCodesBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Make-up codes for black runs.
makeupCodesWhite - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
Make-up codes for white runs.
MANUAL - Static variable in class loci.poi.hssf.record.CalcModeRecord
manually calculate formulas (0)
MANUFACTURER - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
 
ManufacturerSpec - Class in ome.xml.model
 
ManufacturerSpec() - Constructor for class ome.xml.model.ManufacturerSpec
Default constructor.
ManufacturerSpec(Element, OMEModel) - Constructor for class ome.xml.model.ManufacturerSpec
Constructs ManufacturerSpec recursively from an XML DOM tree.
ManufacturerSpec(ManufacturerSpec) - Constructor for class ome.xml.model.ManufacturerSpec
Copy constructor.
map - Variable in class loci.formats.tools.AmiraParameters
 
map_base_pg - Variable in class mdbtools.libmdb.MdbTableDef
 
map_sz - Variable in class mdbtools.libmdb.MdbFile
 
map_sz - Variable in class mdbtools.libmdb.MdbTableDef
 
mapFile(String, IRandomAccess) - Static method in class loci.common.Location
Maps the given id to the given IRandomAccess object.
mapFile(String) - Static method in class loci.tests.testng.TestTools
Map the given file into memory.
mapFile(String, IRandomAccess) - Static method in class ome.scifio.io.Location
Maps the given id to the given IRandomAccess object.
mapId(String, String) - Static method in class loci.common.Location
Maps the given id to an actual filename on disk.
mapId(String, String) - Static method in class ome.scifio.io.Location
Maps the given id to an actual filename on disk.
mapMode - Variable in class ome.scifio.io.NIOFileHandle
The default map mode for the file.
mapServer(String, String) - Static method in class loci.formats.in.FlexReader
Map the server named 'alias' to the path 'realName'.
mapServer(String, String[]) - Static method in class loci.formats.in.FlexReader
Map the server named 'alias' to the paths in 'realNames'.
mapServersFromConfigurationFile(String) - Static method in class loci.formats.in.FlexReader
Read a configuration file with lines of the form: <server alias>=<real server name> and call mapServer(String, String) accordingly.
Margin - Interface in loci.poi.hssf.record
The margin interface is a parent used to define left, right, top and bottom margins.
margins - Variable in class loci.poi.hssf.model.Sheet
 
mark() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
mark(int) - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
 
mark(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
 
mark(int) - Method in class loci.common.NIOInputStream
 
mark(int) - Method in class loci.common.RandomAccessInputStream
 
mark(int) - Method in class loci.poi.poifs.filesystem.DocumentInputStream
Marks the current position in this input stream.
mark(int) - Method in class loci.poi.util.BlockingInputStream
 
mark(int) - Method in class ome.scifio.io.NIOInputStream
 
mark(int) - Method in class ome.scifio.io.RandomAccessInputStream
 
mark - Variable in class ome.scifio.io.StreamHandle
Marked position within the stream.
markedPos - Variable in class ome.scifio.io.RandomAccessInputStream
 
Marker - Enum in ome.xml.model.enums
 
MarkerEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for Marker.
MarkerEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MarkerEnumHandler
 
Markers - Interface in jj2000.j2k.codestream
This interface defines the values of the different markers in the JPEG 2000 codestream.
markSupported() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
 
markSupported() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
 
markSupported() - Method in class loci.common.NIOInputStream
 
markSupported() - Method in class loci.common.RandomAccessInputStream
 
markSupported() - Method in class loci.poi.poifs.filesystem.DocumentInputStream
Tests if this input stream supports the mark and reset methods.
markSupported() - Method in class loci.poi.util.BlockingInputStream
 
markSupported() - Method in class ome.scifio.io.NIOInputStream
 
markSupported() - Method in class ome.scifio.io.RandomAccessInputStream
 
MarkUnsupportedException - Exception in loci.poi.hpsf
This exception is thrown if an InputStream does not support the InputStream.mark(int) operation.
MarkUnsupportedException() - Constructor for exception loci.poi.hpsf.MarkUnsupportedException
Constructor
MarkUnsupportedException(String) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException
Constructor
MarkUnsupportedException(Throwable) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException
Constructor
MarkUnsupportedException(String, Throwable) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException
Constructor
Mask - Class in ome.xml.model
 
Mask() - Constructor for class ome.xml.model.Mask
Default constructor.
Mask(Element, OMEModel) - Constructor for class ome.xml.model.Mask
Constructs Mask recursively from an XML DOM tree.
Mask(Mask) - Constructor for class ome.xml.model.Mask
Copy constructor.
maskPGM - Variable in class jj2000.j2k.roi.encoder.ROI
ImgReaderPGM object with the arbrtrary ROI
masterClock - Variable in class loci.formats.in.SDTInfo
Use or not Master Clock (SPC140 multi-module).
MathUtil - Class in jj2000.j2k.util
This class contains a collection of utility methods fro mathematical operations.
MathUtil() - Constructor for class jj2000.j2k.util.MathUtil
 
max(double) - Method in class loci.plugins.util.RecordedImageProcessor
 
Max - Class in mdbtools.dbengine.functions
 
Max() - Constructor for class mdbtools.dbengine.functions.Max
 
MAX_APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD
 
MAX_BUCKETS - Static variable in class loci.poi.hssf.record.ExtSSTRecord
 
MAX_CB_AREA - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions
The maximum code-block area (width x height).
MAX_CB_DIM - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions
The maximum code-block dimension.
MAX_COMP_BITDEPTH - Static variable in interface jj2000.j2k.codestream.Markers
The maximum number of component bitdepth
MAX_COMPONENTS - Static variable in class loci.plugins.in.SeriesDialog
 
MAX_DATATYPE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
The numerically largest constant representing a TIFF data type.
MAX_EL_COPYING - Static variable in class jj2000.j2k.util.ArrayUtil
The maximum array size to do element by element copying, larger arrays are copyied in a n optimized way.
MAX_HEADER_SIZE - Static variable in class loci.formats.in.QuesantReader
 
MAX_INT - Static variable in class jj2000.j2k.IntegerSpec
The largest value of type int
MAX_LPPM - Static variable in interface jj2000.j2k.codestream.Markers
Maximum length of PPM marker segment
MAX_LPPT - Static variable in interface jj2000.j2k.codestream.Markers
Maximum length of PPT marker segment
MAX_OVERHEAD - Static variable in class ome.scifio.io.RandomAccessInputStream
Maximum size of the buffer used by the DataInputStream.
MAX_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy
 
MAX_RECORD_DATA_SIZE - Static variable in class loci.poi.hssf.record.RecordInputStream
Maximum size of a single record (minus the 4 byte header) without a continue
MAX_ROW_NUMBER - Static variable in class loci.poi.hssf.record.RowRecord
The maximum row number that excel can handle (zero bazed) ie 65536 rows is max number of rows.
MAX_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD
 
MAX_SEARCH_SIZE - Static variable in class ome.scifio.io.NIOInputStream
Maximum number of bytes to search when searching through the stream.
MAX_SEARCH_SIZE - Static variable in class ome.scifio.io.RandomAccessInputStream
Maximum number of bytes to search when searching through the stream.
MAX_SERIES_THUMBS - Static variable in class loci.plugins.in.SeriesDialog
 
MAX_SERIES_TOGGLES - Static variable in class loci.plugins.in.SeriesDialog
 
MAX_TRIES - Static variable in class loci.plugins.util.LuraWave
 
maxAdcRate - Variable in class loci.formats.in.SDTInfo
 
maxByte - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
The maximum number of bytes that can be read from the buffer
maxBytes - Variable in class jj2000.j2k.codestream.writer.CodestreamWriter
The maximum number of bytes that can be written to the bit stream
maxBytes - Variable in class loci.formats.codec.CodecOptions
If compressing, this is the maximum number of raw bytes to compress.
maxCfdRate - Variable in class loci.formats.in.SDTInfo
(-1.0 - not set).
maxImgRes - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
The maximum available image resolution level
maximum - Variable in class ome.scifio.common.StatusEvent
Current progress maximum.
MAXLEVEL - Static variable in class com.sun.media.imageioimpl.common.PaletteBuilder
maximum of tree depth
maxNodes - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
 
MaxShiftSpec - Class in jj2000.j2k.roi
This class contains the maxshift scaling value for each tile-component.
MaxShiftSpec(int, int, byte, String) - Constructor for class jj2000.j2k.roi.MaxShiftSpec
Constructs a 'ModuleSpec' object, initializing all the components and tiles to the 'SPEC_DEF' spec type, for the specified number of components and tiles.
maxSyncRate - Variable in class loci.formats.in.SDTInfo
Maximum rates during the measurement.
maxTacRate - Variable in class loci.formats.in.SDTInfo
 
maxValue() - Method in class loci.plugins.util.RecordedImageProcessor
 
mcsPoints - Variable in class loci.formats.in.SDTInfo
No of MCS values.
mcsTime - Variable in class loci.formats.in.SDTInfo
Interval time [ms] for MCS histogram.
md5(byte[], int, int, int, int, int, int, int) - Static method in class loci.tests.testng.TestTools
Calculate the MD5 of a byte array.
md5(byte[], int, int) - Static method in class loci.tests.testng.TestTools
Calculate the MD5 of a byte array.
md5(byte[]) - Static method in class loci.tests.testng.TestTools
Calculate the MD5 of a byte array.
mdb - Variable in class mdbtools.libmdb.MdbCatalogEntry
 
mdb_access_types - Static variable in class mdbtools.libmdb.backend
 
mdb_add_sarg(MdbColumn, MdbSarg) - Static method in class mdbtools.libmdb.Sargs
 
mdb_alloc_catalog(MdbHandle) - Static method in class mdbtools.libmdb.mem
 
mdb_alloc_file() - Static method in class mdbtools.libmdb.mem
 
mdb_alloc_handle() - Static method in class mdbtools.libmdb.mem
 
mdb_alloc_tabledef(MdbCatalogEntry) - Static method in class mdbtools.libmdb.mem
 
MDB_ANY - Static variable in class mdbtools.libmdb.Constants
 
mdb_backends - Static variable in class mdbtools.libmdb.backend
 
mdb_bind_column(MdbTableDef, int, Holder) - Static method in class mdbtools.libmdb.Data
 
MDB_BIND_SIZE - Static variable in class mdbtools.libmdb.Constants
 
MDB_BOOL - Static variable in class mdbtools.libmdb.Constants
 
MDB_BYTE - Static variable in class mdbtools.libmdb.Constants
 
MDB_CATALOG_PG - Static variable in class mdbtools.libmdb.Constants
 
mdb_col_to_string(MdbHandle, int, int, int) - Static method in class mdbtools.libmdb.Data
 
MDB_DATABASE_PROPERTY - Static variable in class mdbtools.libmdb.Constants
 
MDB_DOUBLE - Static variable in class mdbtools.libmdb.Constants
 
MDB_EQUAL - Static variable in class mdbtools.libmdb.Constants
 
mdb_export - Class in mdbtools
 
mdb_export() - Constructor for class mdbtools.mdb_export
 
mdb_fetch_row(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_find_end_of_row(MdbHandle, int) - Static method in class mdbtools.libmdb.Data
 
MDB_FLOAT - Static variable in class mdbtools.libmdb.Constants
 
MDB_FORM - Static variable in class mdbtools.libmdb.Constants
 
mdb_free_catalog(MdbHandle) - Static method in class mdbtools.libmdb.mem
 
mdb_free_handle(MdbHandle) - Static method in class mdbtools.libmdb.mem
 
mdb_get_byte(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_coltype_string(MdbBackend, int) - Static method in class mdbtools.libmdb.backend
 
mdb_get_double(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_int16(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_int24(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_int32(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_single(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
MDB_GT - Static variable in class mdbtools.libmdb.Constants
 
MDB_GTEQ - Static variable in class mdbtools.libmdb.Constants
 
mdb_init() - Static method in class mdbtools.libmdb.mem
 
mdb_init_backends() - Static method in class mdbtools.libmdb.backend
 
MDB_INT - Static variable in class mdbtools.libmdb.Constants
 
MDB_ISNULL - Static variable in class mdbtools.libmdb.Constants
 
MDB_LIKE - Static variable in class mdbtools.libmdb.Constants
 
MDB_LINKED_TABLE - Static variable in class mdbtools.libmdb.Constants
 
MDB_LONGINT - Static variable in class mdbtools.libmdb.Constants
 
MDB_LT - Static variable in class mdbtools.libmdb.Constants
 
MDB_LTEQ - Static variable in class mdbtools.libmdb.Constants
 
MDB_MACRO - Static variable in class mdbtools.libmdb.Constants
 
MDB_MAX_COLS - Static variable in class mdbtools.libmdb.Constants
 
MDB_MAX_IDX_COLS - Static variable in class mdbtools.libmdb.Constants
 
MDB_MAX_OBJ_NAME - Static variable in class mdbtools.libmdb.Constants
 
MDB_MEMO - Static variable in class mdbtools.libmdb.Constants
 
MDB_MEMO_OVERHEAD - Static variable in class mdbtools.libmdb.Constants
 
mdb_memo_to_string(MdbHandle, int, int) - Static method in class mdbtools.libmdb.Data
 
MDB_MODULE - Static variable in class mdbtools.libmdb.Constants
 
MDB_MONEY - Static variable in class mdbtools.libmdb.Constants
 
mdb_money_to_string(MdbHandle, int) - Static method in class mdbtools.libmdb.Money
 
MDB_NOTNULL - Static variable in class mdbtools.libmdb.Constants
 
MDB_NUMERIC - Static variable in class mdbtools.libmdb.Constants
 
MDB_OLE - Static variable in class mdbtools.libmdb.Constants
 
mdb_open(RandomAccess) - Static method in class mdbtools.libmdb.file
 
mdb_oracle_types - Static variable in class mdbtools.libmdb.backend
 
MDB_PGSIZE - Static variable in class mdbtools.libmdb.Constants
 
MDB_PGSIZE - Static variable in class mdbtools.libmdb.MdbHandle
 
mdb_postgres_types - Static variable in class mdbtools.libmdb.backend
 
MDB_QUERY - Static variable in class mdbtools.libmdb.Constants
 
mdb_read_alt_pg(MdbHandle, long) - Static method in class mdbtools.libmdb.file
 
mdb_read_catalog(MdbHandle, int) - Static method in class mdbtools.libmdb.Catalog
 
mdb_read_columns(MdbTableDef) - Static method in class mdbtools.libmdb.Table
 
mdb_read_next_dpg(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_read_next_dpg_by_map0(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_read_next_dpg_by_map1(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_read_pg(MdbHandle, long) - Static method in class mdbtools.libmdb.file
mdb_read a wrapper for read that bails if anything is wrong
mdb_read_row(MdbTableDef, int) - Static method in class mdbtools.libmdb.Data
 
mdb_read_table(MdbCatalogEntry) - Static method in class mdbtools.libmdb.Table
 
MDB_RELATIONSHIP - Static variable in class mdbtools.libmdb.Constants
 
MDB_REPID - Static variable in class mdbtools.libmdb.Constants
 
MDB_REPORT - Static variable in class mdbtools.libmdb.Constants
 
mdb_rewind_table(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_schema - Class in mdbtools
 
mdb_schema() - Constructor for class mdbtools.mdb_schema
 
MDB_SDATETIME - Static variable in class mdbtools.libmdb.Constants
 
mdb_set_default_backend(MdbHandle, String) - Static method in class mdbtools.libmdb.backend
 
MDB_SUFFIX - Static variable in class loci.formats.in.ZeissLSMReader
 
mdb_swap_pgbuf(MdbHandle) - Static method in class mdbtools.libmdb.file
 
mdb_sybase_types - Static variable in class mdbtools.libmdb.backend
 
MDB_SYSTEM_TABLE - Static variable in class mdbtools.libmdb.Constants
 
MDB_TABLE - Static variable in class mdbtools.libmdb.Constants
 
mdb_tables - Class in mdbtools.examples
 
mdb_tables() - Constructor for class mdbtools.examples.mdb_tables
 
mdb_tables - Class in mdbtools
 
mdb_tables() - Constructor for class mdbtools.mdb_tables
 
mdb_test_int(MdbSarg, int) - Static method in class mdbtools.libmdb.Sargs
 
mdb_test_sarg(MdbHandle, MdbColumn, MdbSarg, int, int) - Static method in class mdbtools.libmdb.Sargs
 
mdb_test_sargs(MdbHandle, MdbColumn, int, int) - Static method in class mdbtools.libmdb.Sargs
 
MDB_TEXT - Static variable in class mdbtools.libmdb.Constants
 
MDB_UNKNOWN_09 - Static variable in class mdbtools.libmdb.Constants
 
MDB_UNKNOWN_0A - Static variable in class mdbtools.libmdb.Constants
 
mdb_xfer_bound_bool(MdbHandle, MdbColumn, boolean) - Static method in class mdbtools.libmdb.Data
 
mdb_xfer_bound_data(MdbHandle, int, MdbColumn, int) - Static method in class mdbtools.libmdb.Data
 
mdb_xfer_bound_ole(MdbHandle, int, MdbColumn, int) - Static method in class mdbtools.libmdb.Data
 
MdbAny - Class in mdbtools.libmdb
 
MdbAny() - Constructor for class mdbtools.libmdb.MdbAny
 
MdbBackend - Class in mdbtools.libmdb
 
MdbBackend() - Constructor for class mdbtools.libmdb.MdbBackend
 
MdbCatalogEntry - Class in mdbtools.libmdb
 
MdbCatalogEntry() - Constructor for class mdbtools.libmdb.MdbCatalogEntry
 
MdbColumn - Class in mdbtools.libmdb
 
MdbColumn() - Constructor for class mdbtools.libmdb.MdbColumn
 
MdbFile - Class in mdbtools.libmdb
 
MdbFile() - Constructor for class mdbtools.libmdb.MdbFile
 
MdbFormatConstants - Class in mdbtools.libmdb
 
MdbFormatConstants() - Constructor for class mdbtools.libmdb.MdbFormatConstants
 
MdbHandle - Class in mdbtools.libmdb
 
MdbHandle() - Constructor for class mdbtools.libmdb.MdbHandle
 
MdbJet3Constants - Static variable in class mdbtools.libmdb.MdbFormatConstants
 
MdbJet4Constants - Static variable in class mdbtools.libmdb.MdbFormatConstants
 
MdbSarg - Class in mdbtools.libmdb
 
MdbSarg() - Constructor for class mdbtools.libmdb.MdbSarg
 
MDBService - Interface in loci.formats.services
Interface defining methods for parsing MDB database files.
MDBServiceImpl - Class in loci.formats.services
Implementation of MDBService for parsing MDB database files.
MDBServiceImpl() - Constructor for class loci.formats.services.MDBServiceImpl
Default constructor.
MdbStatistics - Class in mdbtools.libmdb
 
MdbStatistics() - Constructor for class mdbtools.libmdb.MdbStatistics
 
MdbTableDef - Class in mdbtools.libmdb
 
MdbTableDef() - Constructor for class mdbtools.libmdb.MdbTableDef
 
mdbtools - package mdbtools
 
mdbtools.dbengine - package mdbtools.dbengine
 
mdbtools.dbengine.functions - package mdbtools.dbengine.functions
 
mdbtools.dbengine.sql - package mdbtools.dbengine.sql
 
mdbtools.dbengine.tasks - package mdbtools.dbengine.tasks
 
mdbtools.examples - package mdbtools.examples
 
mdbtools.jdbc2 - package mdbtools.jdbc2
 
mdbtools.libmdb - package mdbtools.libmdb
 
mdbtools.libmdb06util - package mdbtools.libmdb06util
 
mdbtools.publicapi - package mdbtools.publicapi
 
mdbtools.tests - package mdbtools.tests
 
mdbver - Class in mdbtools.libmdb06util
 
mdbver() - Constructor for class mdbtools.libmdb06util.mdbver
 
mdl - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
The maximum number of decompostion levels for each component of the current tile.
MEA_SUFFIX - Static variable in class loci.formats.in.FlexReader
 
measDescBlockLength - Variable in class loci.formats.in.SDTInfo
 
measDescBlockNo - Variable in class loci.formats.in.SDTInfo
Number of the measurement description block corresponding to this data block.
measDescBlockOffs - Variable in class loci.formats.in.SDTInfo
 
measMode - Variable in class loci.formats.in.SDTInfo
 
MEASURE_MODE_2D - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSMeasureMode" tag.
MEASURE_MODE_3D - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
A value to be used with the "GPSMeasureMode" tag.
MEASUREMENT_SUFFIXES - Static variable in class loci.formats.in.FlexReader
 
medianFilter() - Method in class loci.plugins.util.RecordedImageProcessor
 
MEDICAL_DOMAIN - Static variable in class loci.formats.FormatTools
Identifies the medical imaging domain.
MEDIUM - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
Medium - Enum in ome.xml.model.enums
 
MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
MEDIUM_DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
MEDIUM_DATE_FORMAT - Static variable in class loci.formats.in.MetamorphReader
 
MediumEnumHandler - Class in ome.xml.model.enums.handlers
Enumeration handler for Medium.
MediumEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MediumEnumHandler
 
mem - Class in mdbtools.libmdb
 
mem() - Constructor for class mdbtools.libmdb.mem
 
MemAreaPtg - Class in loci.poi.hssf.record.formula
 
MemAreaPtg() - Constructor for class loci.poi.hssf.record.formula.MemAreaPtg
Creates new MemAreaPtg
MemAreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemAreaPtg
 
memBank - Variable in class loci.formats.in.SDTInfo
 
MemErrPtg - Class in loci.poi.hssf.record.formula
 
MemErrPtg() - Constructor for class loci.poi.hssf.record.formula.MemErrPtg
Creates new MemErrPtg
MemErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemErrPtg
 
MemFuncPtg - Class in loci.poi.hssf.record.formula
 
MemFuncPtg() - Constructor for class loci.poi.hssf.record.formula.MemFuncPtg
 
MemFuncPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemFuncPtg
Creates new function pointer from a byte array usually called while reading an excel file.
Memoizer - Class in loci.formats
ReaderWrapper implementation which caches the state of the delegate (including and other ReaderWrapper instances) after setId has been called.
Memoizer() - Constructor for class loci.formats.Memoizer
Constructs a memoizer around a new image reader.
Memoizer(long) - Constructor for class loci.formats.Memoizer
Constructs a memoizer around a new image reader.
Memoizer(long, File) - Constructor for class loci.formats.Memoizer
 
Memoizer(IFormatReader) - Constructor for class loci.formats.Memoizer
Constructs a memoizer around the given reader.
Memoizer(IFormatReader, long) - Constructor for class loci.formats.Memoizer
Constructs a memoizer around the given reader.
Memoizer(IFormatReader, long, File) - Constructor for class loci.formats.Memoizer
 
Memoizer.Deser - Interface in loci.formats
 
Memoizer.KryoDeser - Class in loci.formats
 
Memoizer.KryoDeser() - Constructor for class loci.formats.Memoizer.KryoDeser
 
MemoryData - Class in mdbtools.dbengine
An implementation of Data that stores the complete result in memory
MemoryData() - Constructor for class mdbtools.dbengine.MemoryData
 
MemoryData(Data, int) - Constructor for class mdbtools.dbengine.MemoryData
 
MemoryDialog - Class in loci.plugins.in
Bio-Formats Importer memory usage confirmation dialog box.
MemoryDialog(ImportProcess) - Constructor for class loci.plugins.in.MemoryDialog
Creates a memory confirmation dialog for the Bio-Formats Importer.
MemoryRandomAccess - Class in mdbtools.examples
 
MemoryRandomAccess(byte[]) - Constructor for class mdbtools.examples.MemoryRandomAccess
 
merge(Map<String, Object>, Map<String, Object>, String) - Static method in class loci.formats.MetadataTools
Merges the given lists of metadata, prepending the specified prefix for the destination keys.
MergeCellsRecord - Class in loci.poi.hssf.record
Title: Merged Cells Record
Description: Optional record defining a square area of cells to "merged" into one cell.
MergeCellsRecord() - Constructor for class loci.poi.hssf.record.MergeCellsRecord
 
MergeCellsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MergeCellsRecord
Constructs a MergedCellsRecord and sets its fields appropriately
MergeCellsRecord.MergedRegion - Class in loci.poi.hssf.record
this is a low level representation of a MergedRegion of cells.
MergeCellsRecord.MergedRegion(int, int, short, short) - Constructor for class loci.poi.hssf.record.MergeCellsRecord.MergedRegion
create a merged region all in one stroke.
mergeChannels(BufferedImage[]) - Static method in class loci.formats.gui.AWTImageTools
Merges the given images into a single multi-channel image.
merged - Variable in class loci.poi.hssf.model.Sheet
 
mergedRecords - Variable in class loci.poi.hssf.model.Sheet
 
mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
meta - Variable in class loci.plugins.in.ImportProcess
 
metadata - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
The IIOMetadata object containing metadata for the current image.
metadata - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
The IIOMetadata object containing metadata for the current image.
metadata - Variable in class loci.formats.FormatReader
Hashtable containing metadata key/value pairs.
metadata - Variable in class loci.plugins.util.DataBrowser
 
metadataComplete - Variable in class loci.formats.CoreMetadata
Indicates whether or not we are confident that all of the metadata stored within the file has been parsed.
MetadataConverter - Class in loci.formats.meta
A utility class containing a method for piping a source MetadataRetrieve object into a destination MetadataStore.
MetadataLevel - Enum in loci.formats.in
Source code: Trac, Gitweb
MetadataOnly - Class in ome.xml.model
 
MetadataOnly() - Constructor for class ome.xml.model.MetadataOnly
Default constructor.
MetadataOnly(Element, OMEModel) - Constructor for class ome.xml.model.MetadataOnly
Constructs MetadataOnly recursively from an XML DOM tree.
MetadataOnly(MetadataOnly) - Constructor for class ome.xml.model.MetadataOnly
Copy constructor.
metadataOptions - Variable in class loci.formats.FormatReader
Metadata parsing options.
MetadataOptions - Interface in loci.formats.in
Source code: Trac, Gitweb
metadataRetrieve - Variable in class loci.formats.FormatWriter
Current metadata retrieval object.
MetadataRetrieve - Interface in loci.formats.meta
A proxy whose responsibility it is to extract biological image data from a particular storage medium.
MetadataRoot - Interface in loci.formats.meta
Abstract metadata root node.
metadataStore - Variable in class loci.formats.FormatReader
Current metadata store.
MetadataStore - Interface in loci.formats.meta
A proxy whose responsibility it is to marshal biological image data into a particular storage medium.
MetadataTools - Class in loci.formats
A utility class for working with metadata objects, including MetadataStore, MetadataRetrieve, and OME-XML strings.
MetakitException - Exception in ome.metakit
MetakitException is the exception thrown when something goes wrong when reading a Metakit database file.
MetakitException() - Constructor for exception ome.metakit.MetakitException
 
MetakitException(String) - Constructor for exception ome.metakit.MetakitException
 
MetakitException(String, Throwable) - Constructor for exception ome.metakit.MetakitException
 
MetakitException(Throwable) - Constructor for exception ome.metakit.MetakitException
 
MetakitReader - Class in ome.metakit
Top-level reader for Metakit database files.
MetakitReader(String) - Constructor for class ome.metakit.MetakitReader
 
MetakitReader(RandomAccessInputStream) - Constructor for class ome.metakit.MetakitReader
 
MetakitService - Interface in loci.formats.services
Interface defining methods for interacting with the OME Metakit library.
MetakitServiceImpl - Class in loci.formats.services
Implementation of MetakitService for interacting with the OME Metakit library.
MetakitServiceImpl() - Constructor for class loci.formats.services.MetakitServiceImpl
 
MetakitTools - Class in ome.metakit
Utility methods for working with Metakit database files.
MetakitTools() - Constructor for class ome.metakit.MetakitTools
 
MetamorphHandler - Class in loci.formats.in
MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.
MetamorphHandler() - Constructor for class loci.formats.in.MetamorphHandler
 
MetamorphHandler(Hashtable) - Constructor for class loci.formats.in.MetamorphHandler
 
MetamorphReader - Class in loci.formats.in
Reader is the file format reader for Metamorph STK files.
MetamorphReader() - Constructor for class loci.formats.in.MetamorphReader
Constructs a new Metamorph reader.
MetamorphTiffReader - Class in loci.formats.in
MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.
MetamorphTiffReader() - Constructor for class loci.formats.in.MetamorphTiffReader
Constructs a new Metamorph TIFF reader.
metaWindow - Variable in class loci.plugins.util.DataBrowser
 
METERING_MODE - Static variable in class loci.formats.tiff.IFD
 
METERING_MODE_AVERAGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
METERING_MODE_CENTER_WEIGHTED_AVERAGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
METERING_MODE_MAX_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
METERING_MODE_MIN_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
METERING_MODE_MULTI_SPOT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
METERING_MODE_OTHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
METERING_MODE_PARTIAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
METERING_MODE_PATTERN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
METERING_MODE_SPOT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
METERING_MODE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
A value to be used with the "MeteringMode" tag.
MIASReader - Class in loci.formats.in
MIASReader is the file format reader for Maia Scientific MIAS-2 datasets.
MIASReader() - Constructor for class loci.formats.in.MIASReader
Constructs a new MIAS reader.
MicrobeamManipulation - Class in ome.xml.model
 
MicrobeamManipulation() - Constructor for class ome.xml.model.MicrobeamManipulation
Default constructor.
MicrobeamManipulation(Element, OMEModel) - Constructor for class ome.xml.model.MicrobeamManipulation
Constructs MicrobeamManipulation recursively from an XML DOM tree.
MicrobeamManipulation(MicrobeamManipulation) - Constructor for class ome.xml.model.MicrobeamManipulation
Copy constructor.
MicrobeamManipulationRef - Class in ome.xml.model