loci.formats.ome

Class OMEXMLMetadataRoot

java.lang.Object

ome.xml.model.AbstractOMEModelObject

ome.xml.model.OME

loci.formats.ome.OMEXMLMetadataRoot

All Implemented Interfaces:

MetadataRoot, OMEModelObject

public class OMEXMLMetadataRoot
extends OME
implements MetadataRoot

A utility class for constructing and manipulating OME-XML DOMs.

Source code:

Trac, Gitweb

Author:

Roger Leigh rleigh at dundee.ac.uk

Field Summary

Fields inherited from class ome.xml.model.OME

NAMESPACE

Constructor Summary

Constructors

Constructor and Description
OMEXMLMetadataRoot() Default constructor.
OMEXMLMetadataRoot(Element element, OMEModel model) Constructs OME recursively from an XML DOM tree.
OMEXMLMetadataRoot(OME ome) Construct from existing OME instance.

Method Summary

Methods inherited from class ome.xml.model.OME

addDataset, addExperiment, addExperimenter, addExperimenterGroup, addImage, addInstrument, addPlate, addProject, addROI, addScreen, asXMLElement, asXMLElement, copyDatasetList, copyExperimenterGroupList, copyExperimenterList, copyExperimentList, copyImageList, copyInstrumentList, copyPlateList, copyProjectList, copyROIList, copyScreenList, getBinaryOnly, getCreator, getDataset, getExperiment, getExperimenter, getExperimenterGroup, getImage, getInstrument, getPlate, getProject, getRights, getROI, getScreen, getStructuredAnnotations, getUUID, link, removeDataset, removeExperiment, removeExperimenter, removeExperimenterGroup, removeImage, removeInstrument, removePlate, removeProject, removeROI, removeScreen, setBinaryOnly, setCreator, setDataset, setExperiment, setExperimenter, setExperimenterGroup, setImage, setInstrument, setPlate, setProject, setRights, setROI, setScreen, setStructuredAnnotations, setUUID, sizeOfDatasetList, sizeOfExperimenterGroupList, sizeOfExperimenterList, sizeOfExperimentList, sizeOfImageList, sizeOfInstrumentList, sizeOfPlateList, sizeOfProjectList, sizeOfROIList, sizeOfScreenList, update

Methods inherited from class ome.xml.model.AbstractOMEModelObject

getChildrenByTagName, stripNamespacePrefix

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OMEXMLMetadataRoot

public OMEXMLMetadataRoot()

Default constructor.

OMEXMLMetadataRoot

public OMEXMLMetadataRoot(Element element,
                  OMEModel model)
                   throws EnumerationException

Constructs OME recursively from an XML DOM tree.

Parameters:

element - Root of the XML DOM tree to construct a model object graph from.

model - Handler for the OME model which keeps track of instances and references seen during object population.

Throws:

EnumerationException - If there is an error instantiating an enumeration during model object creation.

OMEXMLMetadataRoot

public OMEXMLMetadataRoot(OME ome)

Construct from existing OME instance.

Parameters:

ome - the OME instance to copy.