MetadataStore (Bio-Formats API)

All Superinterfaces:

BaseMetadata

All Known Subinterfaces:

IMetadata, OMEXMLMetadata

All Known Implementing Classes:

AbstractOMEXMLMetadata, AggregateMetadata, DummyMetadata, FilterMetadata, OMEXMLMetadataImpl
```
public interface MetadataStore
extends BaseMetadata
```
A proxy whose responsibility it is to marshal biological image data into a particular storage medium.
The MetadataStore interface encompasses the metadata that any specific storage medium (file, relational database, etc.) should be expected to store into its backing data model.
The MetadataStore interface goes hand in hand with the MetadataRetrieve interface. Essentially, MetadataRetrieve provides the "getter" methods for a storage medium, and MetadataStore provides the "setter" methods.
Since it often makes sense for a storage medium to implement both interfaces, there is also an IMetadata interface encompassing both MetadataStore and MetadataRetrieve, which reduces the need to cast between object types.
See OMEXMLMetadata for an example implementation.
Important note: It is strongly recommended that applications (e.g., file format readers) using MetadataStore populate information in a linear order. Specifically, iterating over entities from "leftmost" index to "rightmost" index is required for certain MetadataStore implementations such as OMERO's OMEROMetadataStore. For example, when populating Image, Pixels and Plane information, an outer loop should iterate across imageIndex, an inner loop should iterate across pixelsIndex, and an innermost loop should handle planeIndex. For an illustration of the ideal traversal order, see MetadataConverter.convertMetadata(loci.formats.meta.MetadataRetrieve, loci.formats.meta.MetadataStore).

Author:

Chris Allan callan at blackcat.ca, Curtis Rueden ctrueden at wisc.edu

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`createRoot()`
`MetadataRoot`	`getRoot()`
`void`	`setArcID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcPower(Double power, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcType(ArcType type, int instrumentIndex, int lightSourceIndex)`
`void`	`setBinaryFileFileName(String fileName, int fileAnnotationIndex)`
`void`	`setBinaryFileMIMEType(String mimeType, int fileAnnotationIndex)`
`void`	`setBinaryFileSize(NonNegativeLong size, int fileAnnotationIndex)`
`void`	`setBinaryOnlyMetadataFile(String metadataFile)`
`void`	`setBinaryOnlyUUID(String uuid)`
`void`	`setBooleanAnnotationAnnotationRef(String annotation, int booleanAnnotationIndex, int annotationRefIndex)`
`void`	`setBooleanAnnotationAnnotator(String annotator, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationDescription(String description, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationID(String id, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationNamespace(String namespace, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationValue(Boolean value, int booleanAnnotationIndex)`
`void`	`setChannelAcquisitionMode(AcquisitionMode acquisitionMode, int imageIndex, int channelIndex)`
`void`	`setChannelAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex)`
`void`	`setChannelColor(Color color, int imageIndex, int channelIndex)`
`void`	`setChannelContrastMethod(ContrastMethod contrastMethod, int imageIndex, int channelIndex)`
`void`	`setChannelEmissionWavelength(PositiveInteger emissionWavelength, int imageIndex, int channelIndex)`
`void`	`setChannelExcitationWavelength(PositiveInteger excitationWavelength, int imageIndex, int channelIndex)`
`void`	`setChannelFilterSetRef(String filterSet, int imageIndex, int channelIndex)`
`void`	`setChannelFluor(String fluor, int imageIndex, int channelIndex)`
`void`	`setChannelID(String id, int imageIndex, int channelIndex)`
`void`	`setChannelIlluminationType(IlluminationType illuminationType, int imageIndex, int channelIndex)`
`void`	`setChannelLightSourceSettingsAttenuation(PercentFraction attenuation, int imageIndex, int channelIndex)`
`void`	`setChannelLightSourceSettingsID(String id, int imageIndex, int channelIndex)`
`void`	`setChannelLightSourceSettingsWavelength(PositiveInteger wavelength, int imageIndex, int channelIndex)`
`void`	`setChannelName(String name, int imageIndex, int channelIndex)`
`void`	`setChannelNDFilter(Double ndFilter, int imageIndex, int channelIndex)`
`void`	`setChannelPinholeSize(Double pinholeSize, int imageIndex, int channelIndex)`
`void`	`setChannelPockelCellSetting(Integer pockelCellSetting, int imageIndex, int channelIndex)`
`void`	`setChannelSamplesPerPixel(PositiveInteger samplesPerPixel, int imageIndex, int channelIndex)`
`void`	`setCommentAnnotationAnnotationRef(String annotation, int commentAnnotationIndex, int annotationRefIndex)`
`void`	`setCommentAnnotationAnnotator(String annotator, int commentAnnotationIndex)`
`void`	`setCommentAnnotationDescription(String description, int commentAnnotationIndex)`
`void`	`setCommentAnnotationID(String id, int commentAnnotationIndex)`
`void`	`setCommentAnnotationNamespace(String namespace, int commentAnnotationIndex)`
`void`	`setCommentAnnotationValue(String value, int commentAnnotationIndex)`
`void`	`setDatasetAnnotationRef(String annotation, int datasetIndex, int annotationRefIndex)`
`void`	`setDatasetDescription(String description, int datasetIndex)`
`void`	`setDatasetExperimenterGroupRef(String experimenterGroup, int datasetIndex)`
`void`	`setDatasetExperimenterRef(String experimenter, int datasetIndex)`
`void`	`setDatasetID(String id, int datasetIndex)`
`void`	`setDatasetImageRef(String image, int datasetIndex, int imageRefIndex)`
`void`	`setDatasetName(String name, int datasetIndex)`
`void`	`setDetectorAmplificationGain(Double amplificationGain, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorGain(Double gain, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorID(String id, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorLotNumber(String lotNumber, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorManufacturer(String manufacturer, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorModel(String model, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorOffset(Double offset, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorSerialNumber(String serialNumber, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorSettingsBinning(Binning binning, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsGain(Double gain, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsID(String id, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsIntegration(PositiveInteger integration, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsOffset(Double offset, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsReadOutRate(Double readOutRate, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsVoltage(Double voltage, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsZoom(Double zoom, int imageIndex, int channelIndex)`
`void`	`setDetectorType(DetectorType type, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorVoltage(Double voltage, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorZoom(Double zoom, int instrumentIndex, int detectorIndex)`
`void`	`setDichroicID(String id, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicLotNumber(String lotNumber, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicManufacturer(String manufacturer, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicModel(String model, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicSerialNumber(String serialNumber, int instrumentIndex, int dichroicIndex)`
`void`	`setDoubleAnnotationAnnotationRef(String annotation, int doubleAnnotationIndex, int annotationRefIndex)`
`void`	`setDoubleAnnotationAnnotator(String annotator, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationDescription(String description, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationID(String id, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationNamespace(String namespace, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationValue(Double value, int doubleAnnotationIndex)`
`void`	`setEllipseFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setEllipseID(String id, int ROIIndex, int shapeIndex)`
`void`	`setEllipseLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setEllipseLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setEllipseRadiusX(Double radiusX, int ROIIndex, int shapeIndex)`
`void`	`setEllipseRadiusY(Double radiusY, int ROIIndex, int shapeIndex)`
`void`	`setEllipseStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setEllipseStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setEllipseStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setEllipseText(String text, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setEllipseVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setEllipseX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setEllipseY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setExperimentDescription(String description, int experimentIndex)`
`void`	`setExperimenterAnnotationRef(String annotation, int experimenterIndex, int annotationRefIndex)`
`void`	`setExperimenterEmail(String email, int experimenterIndex)`
`void`	`setExperimenterFirstName(String firstName, int experimenterIndex)`
`void`	`setExperimenterGroupAnnotationRef(String annotation, int experimenterGroupIndex, int annotationRefIndex)`
`void`	`setExperimenterGroupDescription(String description, int experimenterGroupIndex)`
`void`	`setExperimenterGroupExperimenterRef(String experimenter, int experimenterGroupIndex, int experimenterRefIndex)`
`void`	`setExperimenterGroupID(String id, int experimenterGroupIndex)`
`void`	`setExperimenterGroupLeader(String leader, int experimenterGroupIndex, int leaderIndex)`
`void`	`setExperimenterGroupName(String name, int experimenterGroupIndex)`
`void`	`setExperimenterID(String id, int experimenterIndex)`
`void`	`setExperimenterInstitution(String institution, int experimenterIndex)`
`void`	`setExperimenterLastName(String lastName, int experimenterIndex)`
`void`	`setExperimenterMiddleName(String middleName, int experimenterIndex)`
`void`	`setExperimenterUserName(String userName, int experimenterIndex)`
`void`	`setExperimentExperimenterRef(String experimenter, int experimentIndex)`
`void`	`setExperimentID(String id, int experimentIndex)`
`void`	`setExperimentType(ExperimentType type, int experimentIndex)`
`void`	`setFilamentID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentPower(Double power, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentType(FilamentType type, int instrumentIndex, int lightSourceIndex)`
`void`	`setFileAnnotationAnnotationRef(String annotation, int fileAnnotationIndex, int annotationRefIndex)`
`void`	`setFileAnnotationAnnotator(String annotator, int fileAnnotationIndex)`
`void`	`setFileAnnotationDescription(String description, int fileAnnotationIndex)`
`void`	`setFileAnnotationID(String id, int fileAnnotationIndex)`
`void`	`setFileAnnotationNamespace(String namespace, int fileAnnotationIndex)`
`void`	`setFilterFilterWheel(String filterWheel, int instrumentIndex, int filterIndex)`
`void`	`setFilterID(String id, int instrumentIndex, int filterIndex)`
`void`	`setFilterLotNumber(String lotNumber, int instrumentIndex, int filterIndex)`
`void`	`setFilterManufacturer(String manufacturer, int instrumentIndex, int filterIndex)`
`void`	`setFilterModel(String model, int instrumentIndex, int filterIndex)`
`void`	`setFilterSerialNumber(String serialNumber, int instrumentIndex, int filterIndex)`
`void`	`setFilterSetDichroicRef(String dichroic, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetEmissionFilterRef(String emissionFilter, int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)`
`void`	`setFilterSetExcitationFilterRef(String excitationFilter, int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)`
`void`	`setFilterSetID(String id, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetLotNumber(String lotNumber, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetManufacturer(String manufacturer, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetModel(String model, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetSerialNumber(String serialNumber, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterType(FilterType type, int instrumentIndex, int filterIndex)`
`void`	`setImageAcquisitionDate(Timestamp acquisitionDate, int imageIndex)`
`void`	`setImageAnnotationRef(String annotation, int imageIndex, int annotationRefIndex)`
`void`	`setImageDescription(String description, int imageIndex)`
`void`	`setImageExperimenterGroupRef(String experimenterGroup, int imageIndex)`
`void`	`setImageExperimenterRef(String experimenter, int imageIndex)`
`void`	`setImageExperimentRef(String experiment, int imageIndex)`
`void`	`setImageID(String id, int imageIndex)`
`void`	`setImageInstrumentRef(String instrument, int imageIndex)`
`void`	`setImageMicrobeamManipulationRef(String microbeamManipulation, int imageIndex, int microbeamManipulationRefIndex)`
`void`	`setImageName(String name, int imageIndex)`
`void`	`setImageROIRef(String roi, int imageIndex, int ROIRefIndex)`
`void`	`setImagingEnvironmentAirPressure(Double airPressure, int imageIndex)`
`void`	`setImagingEnvironmentCO2Percent(PercentFraction co2Percent, int imageIndex)`
`void`	`setImagingEnvironmentHumidity(PercentFraction humidity, int imageIndex)`
`void`	`setImagingEnvironmentTemperature(Double temperature, int imageIndex)`
`void`	`setInstrumentID(String id, int instrumentIndex)`
`void`	`setLabelFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setLabelFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setLabelFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setLabelFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setLabelFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setLabelID(String id, int ROIIndex, int shapeIndex)`
`void`	`setLabelLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setLabelLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setLabelStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setLabelStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setLabelStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setLabelText(String text, int ROIIndex, int shapeIndex)`
`void`	`setLabelTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setLabelTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setLabelTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setLabelTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setLabelVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setLabelX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setLabelY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserLaserMedium(LaserMedium laserMedium, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPockelCell(Boolean pockelCell, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPower(Double power, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPulse(Pulse pulse, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPump(String pump, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserRepetitionRate(Double repetitionRate, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserTuneable(Boolean tuneable, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserType(LaserType type, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserWavelength(PositiveInteger wavelength, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodePower(Double power, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightPathDichroicRef(String dichroic, int imageIndex, int channelIndex)`
`void`	`setLightPathEmissionFilterRef(String emissionFilter, int imageIndex, int channelIndex, int emissionFilterRefIndex)`
`void`	`setLightPathExcitationFilterRef(String excitationFilter, int imageIndex, int channelIndex, int excitationFilterRefIndex)`
`void`	`setLineFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setLineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setLineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setLineFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setLineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setLineID(String id, int ROIIndex, int shapeIndex)`
`void`	`setLineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setLineLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setLineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)`
`void`	`setLineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)`
`void`	`setLineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setLineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setLineStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setLineText(String text, int ROIIndex, int shapeIndex)`
`void`	`setLineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setLineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setLineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setLineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setLineVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setLineX1(Double x1, int ROIIndex, int shapeIndex)`
`void`	`setLineX2(Double x2, int ROIIndex, int shapeIndex)`
`void`	`setLineY1(Double y1, int ROIIndex, int shapeIndex)`
`void`	`setLineY2(Double y2, int ROIIndex, int shapeIndex)`
`void`	`setListAnnotationAnnotationRef(String annotation, int listAnnotationIndex, int annotationRefIndex)`
`void`	`setListAnnotationAnnotator(String annotator, int listAnnotationIndex)`
`void`	`setListAnnotationDescription(String description, int listAnnotationIndex)`
`void`	`setListAnnotationID(String id, int listAnnotationIndex)`
`void`	`setListAnnotationNamespace(String namespace, int listAnnotationIndex)`
`void`	`setLongAnnotationAnnotationRef(String annotation, int longAnnotationIndex, int annotationRefIndex)`
`void`	`setLongAnnotationAnnotator(String annotator, int longAnnotationIndex)`
`void`	`setLongAnnotationDescription(String description, int longAnnotationIndex)`
`void`	`setLongAnnotationID(String id, int longAnnotationIndex)`
`void`	`setLongAnnotationNamespace(String namespace, int longAnnotationIndex)`
`void`	`setLongAnnotationValue(Long value, int longAnnotationIndex)`
`void`	`setMaskBinData(byte[] binData, int ROIIndex, int shapeIndex)`
`void`	`setMaskFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setMaskFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setMaskFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setMaskFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setMaskFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setMaskHeight(Double height, int ROIIndex, int shapeIndex)`
`void`	`setMaskID(String id, int ROIIndex, int shapeIndex)`
`void`	`setMaskLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setMaskLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setMaskStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setMaskStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setMaskStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setMaskText(String text, int ROIIndex, int shapeIndex)`
`void`	`setMaskTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setMaskTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setMaskTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setMaskTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setMaskVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setMaskWidth(Double width, int ROIIndex, int shapeIndex)`
`void`	`setMaskX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setMaskY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setMicrobeamManipulationDescription(String description, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicrobeamManipulationExperimenterRef(String experimenter, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicrobeamManipulationID(String id, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`void`	`setMicrobeamManipulationLightSourceSettingsID(String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`void`	`setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`void`	`setMicrobeamManipulationROIRef(String roi, int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)`
`void`	`setMicrobeamManipulationType(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicroscopeLotNumber(String lotNumber, int instrumentIndex)`
`void`	`setMicroscopeManufacturer(String manufacturer, int instrumentIndex)`
`void`	`setMicroscopeModel(String model, int instrumentIndex)`
`void`	`setMicroscopeSerialNumber(String serialNumber, int instrumentIndex)`
`void`	`setMicroscopeType(MicroscopeType type, int instrumentIndex)`
`void`	`setObjectiveCalibratedMagnification(Double calibratedMagnification, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveCorrection(Correction correction, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveID(String id, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveImmersion(Immersion immersion, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveIris(Boolean iris, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveLensNA(Double lensNA, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveLotNumber(String lotNumber, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveManufacturer(String manufacturer, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveModel(String model, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveNominalMagnification(Double nominalMagnification, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveSerialNumber(String serialNumber, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveSettingsCorrectionCollar(Double correctionCollar, int imageIndex)`
`void`	`setObjectiveSettingsID(String id, int imageIndex)`
`void`	`setObjectiveSettingsMedium(Medium medium, int imageIndex)`
`void`	`setObjectiveSettingsRefractiveIndex(Double refractiveIndex, int imageIndex)`
`void`	`setObjectiveWorkingDistance(Double workingDistance, int instrumentIndex, int objectiveIndex)`
`void`	`setPixelsAnnotationRef(String annotation, int imageIndex, int annotationRefIndex)`
`void`	`setPixelsBigEndian(Boolean bigEndian, int imageIndex)`
`void`	`setPixelsBinDataBigEndian(Boolean bigEndian, int imageIndex, int binDataIndex)`
`void`	`setPixelsDimensionOrder(DimensionOrder dimensionOrder, int imageIndex)`
`void`	`setPixelsID(String id, int imageIndex)`
`void`	`setPixelsInterleaved(Boolean interleaved, int imageIndex)`
`void`	`setPixelsPhysicalSizeX(PositiveFloat physicalSizeX, int imageIndex)`
`void`	`setPixelsPhysicalSizeY(PositiveFloat physicalSizeY, int imageIndex)`
`void`	`setPixelsPhysicalSizeZ(PositiveFloat physicalSizeZ, int imageIndex)`
`void`	`setPixelsSignificantBits(PositiveInteger significantBits, int imageIndex)`
`void`	`setPixelsSizeC(PositiveInteger sizeC, int imageIndex)`
`void`	`setPixelsSizeT(PositiveInteger sizeT, int imageIndex)`
`void`	`setPixelsSizeX(PositiveInteger sizeX, int imageIndex)`
`void`	`setPixelsSizeY(PositiveInteger sizeY, int imageIndex)`
`void`	`setPixelsSizeZ(PositiveInteger sizeZ, int imageIndex)`
`void`	`setPixelsTimeIncrement(Double timeIncrement, int imageIndex)`
`void`	`setPixelsType(PixelType type, int imageIndex)`
`void`	`setPlaneAnnotationRef(String annotation, int imageIndex, int planeIndex, int annotationRefIndex)`
`void`	`setPlaneDeltaT(Double deltaT, int imageIndex, int planeIndex)`
`void`	`setPlaneExposureTime(Double exposureTime, int imageIndex, int planeIndex)`
`void`	`setPlaneHashSHA1(String hashSHA1, int imageIndex, int planeIndex)`
`void`	`setPlanePositionX(Double positionX, int imageIndex, int planeIndex)`
`void`	`setPlanePositionY(Double positionY, int imageIndex, int planeIndex)`
`void`	`setPlanePositionZ(Double positionZ, int imageIndex, int planeIndex)`
`void`	`setPlaneTheC(NonNegativeInteger theC, int imageIndex, int planeIndex)`
`void`	`setPlaneTheT(NonNegativeInteger theT, int imageIndex, int planeIndex)`
`void`	`setPlaneTheZ(NonNegativeInteger theZ, int imageIndex, int planeIndex)`
`void`	`setPlateAcquisitionAnnotationRef(String annotation, int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)`
`void`	`setPlateAcquisitionDescription(String description, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionEndTime(Timestamp endTime, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionID(String id, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionName(String name, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionStartTime(Timestamp startTime, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionWellSampleRef(String wellSample, int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)`
`void`	`setPlateAnnotationRef(String annotation, int plateIndex, int annotationRefIndex)`
`void`	`setPlateColumnNamingConvention(NamingConvention columnNamingConvention, int plateIndex)`
`void`	`setPlateColumns(PositiveInteger columns, int plateIndex)`
`void`	`setPlateDescription(String description, int plateIndex)`
`void`	`setPlateExternalIdentifier(String externalIdentifier, int plateIndex)`
`void`	`setPlateFieldIndex(NonNegativeInteger fieldIndex, int plateIndex)`
`void`	`setPlateID(String id, int plateIndex)`
`void`	`setPlateName(String name, int plateIndex)`
`void`	`setPlateRowNamingConvention(NamingConvention rowNamingConvention, int plateIndex)`
`void`	`setPlateRows(PositiveInteger rows, int plateIndex)`
`void`	`setPlateStatus(String status, int plateIndex)`
`void`	`setPlateWellOriginX(Double wellOriginX, int plateIndex)`
`void`	`setPlateWellOriginY(Double wellOriginY, int plateIndex)`
`void`	`setPointFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setPointFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setPointFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setPointFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setPointFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setPointID(String id, int ROIIndex, int shapeIndex)`
`void`	`setPointLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setPointLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setPointStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setPointStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setPointStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setPointText(String text, int ROIIndex, int shapeIndex)`
`void`	`setPointTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setPointTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setPointTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setPointTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setPointVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setPointX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setPointY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setPolygonID(String id, int ROIIndex, int shapeIndex)`
`void`	`setPolygonLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setPolygonLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setPolygonPoints(String points, int ROIIndex, int shapeIndex)`
`void`	`setPolygonStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setPolygonStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setPolygonStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setPolygonText(String text, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setPolygonVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setPolylineID(String id, int ROIIndex, int shapeIndex)`
`void`	`setPolylineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setPolylineLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setPolylineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)`
`void`	`setPolylineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)`
`void`	`setPolylinePoints(String points, int ROIIndex, int shapeIndex)`
`void`	`setPolylineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setPolylineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setPolylineStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setPolylineText(String text, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setPolylineVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setProjectAnnotationRef(String annotation, int projectIndex, int annotationRefIndex)`
`void`	`setProjectDatasetRef(String dataset, int projectIndex, int datasetRefIndex)`
`void`	`setProjectDescription(String description, int projectIndex)`
`void`	`setProjectExperimenterGroupRef(String experimenterGroup, int projectIndex)`
`void`	`setProjectExperimenterRef(String experimenter, int projectIndex)`
`void`	`setProjectID(String id, int projectIndex)`
`void`	`setProjectName(String name, int projectIndex)`
`void`	`setReagentAnnotationRef(String annotation, int screenIndex, int reagentIndex, int annotationRefIndex)`
`void`	`setReagentDescription(String description, int screenIndex, int reagentIndex)`
`void`	`setReagentID(String id, int screenIndex, int reagentIndex)`
`void`	`setReagentName(String name, int screenIndex, int reagentIndex)`
`void`	`setReagentReagentIdentifier(String reagentIdentifier, int screenIndex, int reagentIndex)`
`void`	`setRectangleFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setRectangleHeight(Double height, int ROIIndex, int shapeIndex)`
`void`	`setRectangleID(String id, int ROIIndex, int shapeIndex)`
`void`	`setRectangleLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setRectangleLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setRectangleStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setRectangleStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setRectangleStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setRectangleText(String text, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setRectangleVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setRectangleWidth(Double width, int ROIIndex, int shapeIndex)`
`void`	`setRectangleX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setRectangleY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setRightsRightsHeld(String rightsHeld)`
`void`	`setRightsRightsHolder(String rightsHolder)`
`void`	`setROIAnnotationRef(String annotation, int ROIIndex, int annotationRefIndex)`
`void`	`setROIDescription(String description, int ROIIndex)`
`void`	`setROIID(String id, int ROIIndex)`
`void`	`setROIName(String name, int ROIIndex)`
`void`	`setROINamespace(String namespace, int ROIIndex)`
`void`	`setRoot(MetadataRoot root)`
`void`	`setRoot(Object root)` Deprecated.
`void`	`setScreenAnnotationRef(String annotation, int screenIndex, int annotationRefIndex)`
`void`	`setScreenDescription(String description, int screenIndex)`
`void`	`setScreenID(String id, int screenIndex)`
`void`	`setScreenName(String name, int screenIndex)`
`void`	`setScreenPlateRef(String plate, int screenIndex, int plateRefIndex)`
`void`	`setScreenProtocolDescription(String protocolDescription, int screenIndex)`
`void`	`setScreenProtocolIdentifier(String protocolIdentifier, int screenIndex)`
`void`	`setScreenReagentSetDescription(String reagentSetDescription, int screenIndex)`
`void`	`setScreenReagentSetIdentifier(String reagentSetIdentifier, int screenIndex)`
`void`	`setScreenType(String type, int screenIndex)`
`void`	`setStageLabelName(String name, int imageIndex)`
`void`	`setStageLabelX(Double x, int imageIndex)`
`void`	`setStageLabelY(Double y, int imageIndex)`
`void`	`setStageLabelZ(Double z, int imageIndex)`
`void`	`setTagAnnotationAnnotationRef(String annotation, int tagAnnotationIndex, int annotationRefIndex)`
`void`	`setTagAnnotationAnnotator(String annotator, int tagAnnotationIndex)`
`void`	`setTagAnnotationDescription(String description, int tagAnnotationIndex)`
`void`	`setTagAnnotationID(String id, int tagAnnotationIndex)`
`void`	`setTagAnnotationNamespace(String namespace, int tagAnnotationIndex)`
`void`	`setTagAnnotationValue(String value, int tagAnnotationIndex)`
`void`	`setTermAnnotationAnnotationRef(String annotation, int termAnnotationIndex, int annotationRefIndex)`
`void`	`setTermAnnotationAnnotator(String annotator, int termAnnotationIndex)`
`void`	`setTermAnnotationDescription(String description, int termAnnotationIndex)`
`void`	`setTermAnnotationID(String id, int termAnnotationIndex)`
`void`	`setTermAnnotationNamespace(String namespace, int termAnnotationIndex)`
`void`	`setTermAnnotationValue(String value, int termAnnotationIndex)`
`void`	`setTiffDataFirstC(NonNegativeInteger firstC, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataFirstT(NonNegativeInteger firstT, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataFirstZ(NonNegativeInteger firstZ, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataIFD(NonNegativeInteger ifd, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataPlaneCount(NonNegativeInteger planeCount, int imageIndex, int tiffDataIndex)`
`void`	`setTimestampAnnotationAnnotationRef(String annotation, int timestampAnnotationIndex, int annotationRefIndex)`
`void`	`setTimestampAnnotationAnnotator(String annotator, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationDescription(String description, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationID(String id, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationNamespace(String namespace, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationValue(Timestamp value, int timestampAnnotationIndex)`
`void`	`setTransmittanceRangeCutIn(PositiveInteger cutIn, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeCutInTolerance(NonNegativeInteger cutInTolerance, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeCutOut(PositiveInteger cutOut, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeCutOutTolerance(NonNegativeInteger cutOutTolerance, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeTransmittance(PercentFraction transmittance, int instrumentIndex, int filterIndex)`
`void`	`setUUID(String uuid)` Sets the UUID associated with this collection of metadata.
`void`	`setUUIDFileName(String fileName, int imageIndex, int tiffDataIndex)`
`void`	`setUUIDValue(String value, int imageIndex, int tiffDataIndex)`
`void`	`setWellAnnotationRef(String annotation, int plateIndex, int wellIndex, int annotationRefIndex)`
`void`	`setWellColor(Color color, int plateIndex, int wellIndex)`
`void`	`setWellColumn(NonNegativeInteger column, int plateIndex, int wellIndex)`
`void`	`setWellExternalDescription(String externalDescription, int plateIndex, int wellIndex)`
`void`	`setWellExternalIdentifier(String externalIdentifier, int plateIndex, int wellIndex)`
`void`	`setWellID(String id, int plateIndex, int wellIndex)`
`void`	`setWellReagentRef(String reagent, int plateIndex, int wellIndex)`
`void`	`setWellRow(NonNegativeInteger row, int plateIndex, int wellIndex)`
`void`	`setWellSampleAnnotationRef(String annotation, int plateIndex, int wellIndex, int wellSampleIndex, int annotationRefIndex)`
`void`	`setWellSampleID(String id, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSampleImageRef(String image, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSampleIndex(NonNegativeInteger index, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSamplePositionX(Double positionX, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSamplePositionY(Double positionY, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSampleTimepoint(Timestamp timepoint, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellType(String type, int plateIndex, int wellIndex)`
`void`	`setXMLAnnotationAnnotationRef(String annotation, int XMLAnnotationIndex, int annotationRefIndex)`
`void`	`setXMLAnnotationAnnotator(String annotator, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationDescription(String description, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationID(String id, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationNamespace(String namespace, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationValue(String value, int XMLAnnotationIndex)`

Method Detail

createRoot
```
void createRoot()
```

getRoot
```
MetadataRoot getRoot()
```

setRoot
```
void setRoot(MetadataRoot root)
```

setRoot
```
@Deprecated
void setRoot(Object root)
```
Deprecated.

setPixelsBinDataBigEndian

void setPixelsBinDataBigEndian(Boolean bigEndian,
                             int imageIndex,
                             int binDataIndex)

setMaskBinData

void setMaskBinData(byte[] binData,
                  int ROIIndex,
                  int shapeIndex)

setUUID
```
void setUUID(String uuid)
```
Sets the UUID associated with this collection of metadata.

setArcID

void setArcID(String id,
            int instrumentIndex,
            int lightSourceIndex)

setArcLotNumber

void setArcLotNumber(String lotNumber,
                   int instrumentIndex,
                   int lightSourceIndex)

setArcManufacturer

void setArcManufacturer(String manufacturer,
                      int instrumentIndex,
                      int lightSourceIndex)

setArcModel

void setArcModel(String model,
               int instrumentIndex,
               int lightSourceIndex)

setArcPower

void setArcPower(Double power,
               int instrumentIndex,
               int lightSourceIndex)

setArcSerialNumber

void setArcSerialNumber(String serialNumber,
                      int instrumentIndex,
                      int lightSourceIndex)

setArcType

void setArcType(ArcType type,
              int instrumentIndex,
              int lightSourceIndex)

setBinaryFileFileName

void setBinaryFileFileName(String fileName,
                         int fileAnnotationIndex)

setBinaryFileMIMEType

void setBinaryFileMIMEType(String mimeType,
                         int fileAnnotationIndex)

setBinaryFileSize

void setBinaryFileSize(NonNegativeLong size,
                     int fileAnnotationIndex)

setBinaryOnlyMetadataFile

void setBinaryOnlyMetadataFile(String metadataFile)

setBinaryOnlyUUID
```
void setBinaryOnlyUUID(String uuid)
```

setBooleanAnnotationAnnotationRef

void setBooleanAnnotationAnnotationRef(String annotation,
                                     int booleanAnnotationIndex,
                                     int annotationRefIndex)

setBooleanAnnotationAnnotator

void setBooleanAnnotationAnnotator(String annotator,
                                 int booleanAnnotationIndex)

setBooleanAnnotationDescription

void setBooleanAnnotationDescription(String description,
                                   int booleanAnnotationIndex)

setBooleanAnnotationID

void setBooleanAnnotationID(String id,
                          int booleanAnnotationIndex)

setBooleanAnnotationNamespace

void setBooleanAnnotationNamespace(String namespace,
                                 int booleanAnnotationIndex)

setBooleanAnnotationValue

void setBooleanAnnotationValue(Boolean value,
                             int booleanAnnotationIndex)

setChannelAcquisitionMode

void setChannelAcquisitionMode(AcquisitionMode acquisitionMode,
                             int imageIndex,
                             int channelIndex)

setChannelAnnotationRef

void setChannelAnnotationRef(String annotation,
                           int imageIndex,
                           int channelIndex,
                           int annotationRefIndex)

setChannelColor

void setChannelColor(Color color,
                   int imageIndex,
                   int channelIndex)

setChannelContrastMethod

void setChannelContrastMethod(ContrastMethod contrastMethod,
                            int imageIndex,
                            int channelIndex)

setChannelEmissionWavelength

void setChannelEmissionWavelength(PositiveInteger emissionWavelength,
                                int imageIndex,
                                int channelIndex)

setChannelExcitationWavelength

void setChannelExcitationWavelength(PositiveInteger excitationWavelength,
                                  int imageIndex,
                                  int channelIndex)

setChannelFilterSetRef

void setChannelFilterSetRef(String filterSet,
                          int imageIndex,
                          int channelIndex)

setChannelFluor

void setChannelFluor(String fluor,
                   int imageIndex,
                   int channelIndex)

setChannelID

void setChannelID(String id,
                int imageIndex,
                int channelIndex)

setChannelIlluminationType

void setChannelIlluminationType(IlluminationType illuminationType,
                              int imageIndex,
                              int channelIndex)

setChannelNDFilter

void setChannelNDFilter(Double ndFilter,
                      int imageIndex,
                      int channelIndex)

setChannelName

void setChannelName(String name,
                  int imageIndex,
                  int channelIndex)

setChannelPinholeSize

void setChannelPinholeSize(Double pinholeSize,
                         int imageIndex,
                         int channelIndex)

setChannelPockelCellSetting

void setChannelPockelCellSetting(Integer pockelCellSetting,
                               int imageIndex,
                               int channelIndex)

setChannelSamplesPerPixel

void setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
                             int imageIndex,
                             int channelIndex)

setCommentAnnotationAnnotationRef

void setCommentAnnotationAnnotationRef(String annotation,
                                     int commentAnnotationIndex,
                                     int annotationRefIndex)

setCommentAnnotationAnnotator

void setCommentAnnotationAnnotator(String annotator,
                                 int commentAnnotationIndex)

setCommentAnnotationDescription

void setCommentAnnotationDescription(String description,
                                   int commentAnnotationIndex)

setCommentAnnotationID

void setCommentAnnotationID(String id,
                          int commentAnnotationIndex)

setCommentAnnotationNamespace

void setCommentAnnotationNamespace(String namespace,
                                 int commentAnnotationIndex)

setCommentAnnotationValue

void setCommentAnnotationValue(String value,
                             int commentAnnotationIndex)

setDatasetAnnotationRef

void setDatasetAnnotationRef(String annotation,
                           int datasetIndex,
                           int annotationRefIndex)

setDatasetDescription

void setDatasetDescription(String description,
                         int datasetIndex)

setDatasetExperimenterGroupRef

void setDatasetExperimenterGroupRef(String experimenterGroup,
                                  int datasetIndex)

setDatasetExperimenterRef

void setDatasetExperimenterRef(String experimenter,
                             int datasetIndex)

setDatasetID

void setDatasetID(String id,
                int datasetIndex)

setDatasetImageRef

void setDatasetImageRef(String image,
                      int datasetIndex,
                      int imageRefIndex)

setDatasetName

void setDatasetName(String name,
                  int datasetIndex)

setDetectorAmplificationGain

void setDetectorAmplificationGain(Double amplificationGain,
                                int instrumentIndex,
                                int detectorIndex)

setDetectorGain

void setDetectorGain(Double gain,
                   int instrumentIndex,
                   int detectorIndex)

setDetectorID

void setDetectorID(String id,
                 int instrumentIndex,
                 int detectorIndex)

setDetectorLotNumber

void setDetectorLotNumber(String lotNumber,
                        int instrumentIndex,
                        int detectorIndex)

setDetectorManufacturer

void setDetectorManufacturer(String manufacturer,
                           int instrumentIndex,
                           int detectorIndex)

setDetectorModel

void setDetectorModel(String model,
                    int instrumentIndex,
                    int detectorIndex)

setDetectorOffset

void setDetectorOffset(Double offset,
                     int instrumentIndex,
                     int detectorIndex)

setDetectorSerialNumber

void setDetectorSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int detectorIndex)

setDetectorType

void setDetectorType(DetectorType type,
                   int instrumentIndex,
                   int detectorIndex)

setDetectorVoltage

void setDetectorVoltage(Double voltage,
                      int instrumentIndex,
                      int detectorIndex)

setDetectorZoom

void setDetectorZoom(Double zoom,
                   int instrumentIndex,
                   int detectorIndex)

setDetectorSettingsBinning

void setDetectorSettingsBinning(Binning binning,
                              int imageIndex,
                              int channelIndex)

setDetectorSettingsGain

void setDetectorSettingsGain(Double gain,
                           int imageIndex,
                           int channelIndex)

setDetectorSettingsID

void setDetectorSettingsID(String id,
                         int imageIndex,
                         int channelIndex)

setDetectorSettingsIntegration

void setDetectorSettingsIntegration(PositiveInteger integration,
                                  int imageIndex,
                                  int channelIndex)

setDetectorSettingsOffset

void setDetectorSettingsOffset(Double offset,
                             int imageIndex,
                             int channelIndex)

setDetectorSettingsReadOutRate

void setDetectorSettingsReadOutRate(Double readOutRate,
                                  int imageIndex,
                                  int channelIndex)

setDetectorSettingsVoltage

void setDetectorSettingsVoltage(Double voltage,
                              int imageIndex,
                              int channelIndex)

setDetectorSettingsZoom

void setDetectorSettingsZoom(Double zoom,
                           int imageIndex,
                           int channelIndex)

setDichroicID

void setDichroicID(String id,
                 int instrumentIndex,
                 int dichroicIndex)

setDichroicLotNumber

void setDichroicLotNumber(String lotNumber,
                        int instrumentIndex,
                        int dichroicIndex)

setDichroicManufacturer

void setDichroicManufacturer(String manufacturer,
                           int instrumentIndex,
                           int dichroicIndex)

setDichroicModel

void setDichroicModel(String model,
                    int instrumentIndex,
                    int dichroicIndex)

setDichroicSerialNumber

void setDichroicSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int dichroicIndex)

setDoubleAnnotationAnnotationRef

void setDoubleAnnotationAnnotationRef(String annotation,
                                    int doubleAnnotationIndex,
                                    int annotationRefIndex)

setDoubleAnnotationAnnotator

void setDoubleAnnotationAnnotator(String annotator,
                                int doubleAnnotationIndex)

setDoubleAnnotationDescription

void setDoubleAnnotationDescription(String description,
                                  int doubleAnnotationIndex)

setDoubleAnnotationID

void setDoubleAnnotationID(String id,
                         int doubleAnnotationIndex)

setDoubleAnnotationNamespace

void setDoubleAnnotationNamespace(String namespace,
                                int doubleAnnotationIndex)

setDoubleAnnotationValue

void setDoubleAnnotationValue(Double value,
                            int doubleAnnotationIndex)

setEllipseFillColor

void setEllipseFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)

setEllipseFillRule

void setEllipseFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)

setEllipseFontFamily

void setEllipseFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)

setEllipseFontSize

void setEllipseFontSize(NonNegativeInteger fontSize,
                      int ROIIndex,
                      int shapeIndex)

setEllipseFontStyle

void setEllipseFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)

setEllipseID

void setEllipseID(String id,
                int ROIIndex,
                int shapeIndex)

setEllipseLineCap

void setEllipseLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)

setEllipseLocked

void setEllipseLocked(Boolean locked,
                    int ROIIndex,
                    int shapeIndex)

setEllipseStrokeColor

void setEllipseStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)

setEllipseStrokeDashArray

void setEllipseStrokeDashArray(String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)

setEllipseStrokeWidth

void setEllipseStrokeWidth(Double strokeWidth,
                         int ROIIndex,
                         int shapeIndex)

setEllipseText

void setEllipseText(String text,
                  int ROIIndex,
                  int shapeIndex)

setEllipseTheC

void setEllipseTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)

setEllipseTheT

void setEllipseTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)

setEllipseTheZ

void setEllipseTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)

setEllipseTransform

void setEllipseTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)

setEllipseVisible

void setEllipseVisible(Boolean visible,
                     int ROIIndex,
                     int shapeIndex)

setEllipseRadiusX

void setEllipseRadiusX(Double radiusX,
                     int ROIIndex,
                     int shapeIndex)

setEllipseRadiusY

void setEllipseRadiusY(Double radiusY,
                     int ROIIndex,
                     int shapeIndex)

setEllipseX

void setEllipseX(Double x,
               int ROIIndex,
               int shapeIndex)

setEllipseY

void setEllipseY(Double y,
               int ROIIndex,
               int shapeIndex)

setExperimentDescription

void setExperimentDescription(String description,
                            int experimentIndex)

setExperimentExperimenterRef

void setExperimentExperimenterRef(String experimenter,
                                int experimentIndex)

setExperimentID

void setExperimentID(String id,
                   int experimentIndex)

setExperimentType

void setExperimentType(ExperimentType type,
                     int experimentIndex)

setExperimenterAnnotationRef

void setExperimenterAnnotationRef(String annotation,
                                int experimenterIndex,
                                int annotationRefIndex)

setExperimenterEmail

void setExperimenterEmail(String email,
                        int experimenterIndex)

setExperimenterFirstName

void setExperimenterFirstName(String firstName,
                            int experimenterIndex)

setExperimenterID

void setExperimenterID(String id,
                     int experimenterIndex)

setExperimenterInstitution

void setExperimenterInstitution(String institution,
                              int experimenterIndex)

setExperimenterLastName

void setExperimenterLastName(String lastName,
                           int experimenterIndex)

setExperimenterMiddleName

void setExperimenterMiddleName(String middleName,
                             int experimenterIndex)

setExperimenterUserName

void setExperimenterUserName(String userName,
                           int experimenterIndex)

setExperimenterGroupAnnotationRef

void setExperimenterGroupAnnotationRef(String annotation,
                                     int experimenterGroupIndex,
                                     int annotationRefIndex)

setExperimenterGroupDescription

void setExperimenterGroupDescription(String description,
                                   int experimenterGroupIndex)

setExperimenterGroupExperimenterRef

void setExperimenterGroupExperimenterRef(String experimenter,
                                       int experimenterGroupIndex,
                                       int experimenterRefIndex)

setExperimenterGroupID

void setExperimenterGroupID(String id,
                          int experimenterGroupIndex)

setExperimenterGroupLeader

void setExperimenterGroupLeader(String leader,
                              int experimenterGroupIndex,
                              int leaderIndex)

setExperimenterGroupName

void setExperimenterGroupName(String name,
                            int experimenterGroupIndex)

setFilamentID

void setFilamentID(String id,
                 int instrumentIndex,
                 int lightSourceIndex)

setFilamentLotNumber

void setFilamentLotNumber(String lotNumber,
                        int instrumentIndex,
                        int lightSourceIndex)

setFilamentManufacturer

void setFilamentManufacturer(String manufacturer,
                           int instrumentIndex,
                           int lightSourceIndex)

setFilamentModel

void setFilamentModel(String model,
                    int instrumentIndex,
                    int lightSourceIndex)

setFilamentPower

void setFilamentPower(Double power,
                    int instrumentIndex,
                    int lightSourceIndex)

setFilamentSerialNumber

void setFilamentSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int lightSourceIndex)

setFilamentType

void setFilamentType(FilamentType type,
                   int instrumentIndex,
                   int lightSourceIndex)

setFileAnnotationAnnotationRef

void setFileAnnotationAnnotationRef(String annotation,
                                  int fileAnnotationIndex,
                                  int annotationRefIndex)

setFileAnnotationAnnotator

void setFileAnnotationAnnotator(String annotator,
                              int fileAnnotationIndex)

setFileAnnotationDescription

void setFileAnnotationDescription(String description,
                                int fileAnnotationIndex)

setFileAnnotationID

void setFileAnnotationID(String id,
                       int fileAnnotationIndex)

setFileAnnotationNamespace

void setFileAnnotationNamespace(String namespace,
                              int fileAnnotationIndex)

setFilterFilterWheel

void setFilterFilterWheel(String filterWheel,
                        int instrumentIndex,
                        int filterIndex)

setFilterID

void setFilterID(String id,
               int instrumentIndex,
               int filterIndex)

setFilterLotNumber

void setFilterLotNumber(String lotNumber,
                      int instrumentIndex,
                      int filterIndex)

setFilterManufacturer

void setFilterManufacturer(String manufacturer,
                         int instrumentIndex,
                         int filterIndex)

setFilterModel

void setFilterModel(String model,
                  int instrumentIndex,
                  int filterIndex)

setFilterSerialNumber

void setFilterSerialNumber(String serialNumber,
                         int instrumentIndex,
                         int filterIndex)

setFilterType

void setFilterType(FilterType type,
                 int instrumentIndex,
                 int filterIndex)

setFilterSetDichroicRef

void setFilterSetDichroicRef(String dichroic,
                           int instrumentIndex,
                           int filterSetIndex)

setFilterSetEmissionFilterRef

void setFilterSetEmissionFilterRef(String emissionFilter,
                                 int instrumentIndex,
                                 int filterSetIndex,
                                 int emissionFilterRefIndex)

setFilterSetExcitationFilterRef

void setFilterSetExcitationFilterRef(String excitationFilter,
                                   int instrumentIndex,
                                   int filterSetIndex,
                                   int excitationFilterRefIndex)

setFilterSetID

void setFilterSetID(String id,
                  int instrumentIndex,
                  int filterSetIndex)

setFilterSetLotNumber

void setFilterSetLotNumber(String lotNumber,
                         int instrumentIndex,
                         int filterSetIndex)

setFilterSetManufacturer

void setFilterSetManufacturer(String manufacturer,
                            int instrumentIndex,
                            int filterSetIndex)

setFilterSetModel

void setFilterSetModel(String model,
                     int instrumentIndex,
                     int filterSetIndex)

setFilterSetSerialNumber

void setFilterSetSerialNumber(String serialNumber,
                            int instrumentIndex,
                            int filterSetIndex)

setImageAcquisitionDate

void setImageAcquisitionDate(Timestamp acquisitionDate,
                           int imageIndex)

setImageAnnotationRef

void setImageAnnotationRef(String annotation,
                         int imageIndex,
                         int annotationRefIndex)

setImageDescription

void setImageDescription(String description,
                       int imageIndex)

setImageExperimentRef

void setImageExperimentRef(String experiment,
                         int imageIndex)

setImageExperimenterGroupRef

void setImageExperimenterGroupRef(String experimenterGroup,
                                int imageIndex)

setImageExperimenterRef

void setImageExperimenterRef(String experimenter,
                           int imageIndex)

setImageID

void setImageID(String id,
              int imageIndex)

setImageInstrumentRef

void setImageInstrumentRef(String instrument,
                         int imageIndex)

setImageMicrobeamManipulationRef

void setImageMicrobeamManipulationRef(String microbeamManipulation,
                                    int imageIndex,
                                    int microbeamManipulationRefIndex)

setImageName

void setImageName(String name,
                int imageIndex)

setImageROIRef

void setImageROIRef(String roi,
                  int imageIndex,
                  int ROIRefIndex)

setImagingEnvironmentAirPressure

void setImagingEnvironmentAirPressure(Double airPressure,
                                    int imageIndex)

setImagingEnvironmentCO2Percent

void setImagingEnvironmentCO2Percent(PercentFraction co2Percent,
                                   int imageIndex)

setImagingEnvironmentHumidity

void setImagingEnvironmentHumidity(PercentFraction humidity,
                                 int imageIndex)

setImagingEnvironmentTemperature

void setImagingEnvironmentTemperature(Double temperature,
                                    int imageIndex)

setInstrumentID

void setInstrumentID(String id,
                   int instrumentIndex)

setLabelFillColor

void setLabelFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)

setLabelFillRule

void setLabelFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)

setLabelFontFamily

void setLabelFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)

setLabelFontSize

void setLabelFontSize(NonNegativeInteger fontSize,
                    int ROIIndex,
                    int shapeIndex)

setLabelFontStyle

void setLabelFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)

setLabelID

void setLabelID(String id,
              int ROIIndex,
              int shapeIndex)

setLabelLineCap

void setLabelLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)

setLabelLocked

void setLabelLocked(Boolean locked,
                  int ROIIndex,
                  int shapeIndex)

setLabelStrokeColor

void setLabelStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)

setLabelStrokeDashArray

void setLabelStrokeDashArray(String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)

setLabelStrokeWidth

void setLabelStrokeWidth(Double strokeWidth,
                       int ROIIndex,
                       int shapeIndex)

setLabelText

void setLabelText(String text,
                int ROIIndex,
                int shapeIndex)

setLabelTheC

void setLabelTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)

setLabelTheT

void setLabelTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)

setLabelTheZ

void setLabelTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)

setLabelTransform

void setLabelTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)

setLabelVisible

void setLabelVisible(Boolean visible,
                   int ROIIndex,
                   int shapeIndex)

setLabelX

void setLabelX(Double x,
             int ROIIndex,
             int shapeIndex)

setLabelY

void setLabelY(Double y,
             int ROIIndex,
             int shapeIndex)

setLaserID

void setLaserID(String id,
              int instrumentIndex,
              int lightSourceIndex)

setLaserLotNumber

void setLaserLotNumber(String lotNumber,
                     int instrumentIndex,
                     int lightSourceIndex)

setLaserManufacturer

void setLaserManufacturer(String manufacturer,
                        int instrumentIndex,
                        int lightSourceIndex)

setLaserModel

void setLaserModel(String model,
                 int instrumentIndex,
                 int lightSourceIndex)

setLaserPower

void setLaserPower(Double power,
                 int instrumentIndex,
                 int lightSourceIndex)

setLaserSerialNumber

void setLaserSerialNumber(String serialNumber,
                        int instrumentIndex,
                        int lightSourceIndex)

setLaserFrequencyMultiplication

void setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
                                   int instrumentIndex,
                                   int lightSourceIndex)

setLaserLaserMedium

void setLaserLaserMedium(LaserMedium laserMedium,
                       int instrumentIndex,
                       int lightSourceIndex)

setLaserPockelCell

void setLaserPockelCell(Boolean pockelCell,
                      int instrumentIndex,
                      int lightSourceIndex)

setLaserPulse

void setLaserPulse(Pulse pulse,
                 int instrumentIndex,
                 int lightSourceIndex)

setLaserPump

void setLaserPump(String pump,
                int instrumentIndex,
                int lightSourceIndex)

setLaserRepetitionRate

void setLaserRepetitionRate(Double repetitionRate,
                          int instrumentIndex,
                          int lightSourceIndex)

setLaserTuneable

void setLaserTuneable(Boolean tuneable,
                    int instrumentIndex,
                    int lightSourceIndex)

setLaserType

void setLaserType(LaserType type,
                int instrumentIndex,
                int lightSourceIndex)

setLaserWavelength

void setLaserWavelength(PositiveInteger wavelength,
                      int instrumentIndex,
                      int lightSourceIndex)

setLightEmittingDiodeID

void setLightEmittingDiodeID(String id,
                           int instrumentIndex,
                           int lightSourceIndex)

setLightEmittingDiodeLotNumber

void setLightEmittingDiodeLotNumber(String lotNumber,
                                  int instrumentIndex,
                                  int lightSourceIndex)

setLightEmittingDiodeManufacturer

void setLightEmittingDiodeManufacturer(String manufacturer,
                                     int instrumentIndex,
                                     int lightSourceIndex)

setLightEmittingDiodeModel

void setLightEmittingDiodeModel(String model,
                              int instrumentIndex,
                              int lightSourceIndex)

setLightEmittingDiodePower

void setLightEmittingDiodePower(Double power,
                              int instrumentIndex,
                              int lightSourceIndex)

setLightEmittingDiodeSerialNumber

void setLightEmittingDiodeSerialNumber(String serialNumber,
                                     int instrumentIndex,
                                     int lightSourceIndex)

setLightPathDichroicRef

void setLightPathDichroicRef(String dichroic,
                           int imageIndex,
                           int channelIndex)

setLightPathEmissionFilterRef

void setLightPathEmissionFilterRef(String emissionFilter,
                                 int imageIndex,
                                 int channelIndex,
                                 int emissionFilterRefIndex)

setLightPathExcitationFilterRef

void setLightPathExcitationFilterRef(String excitationFilter,
                                   int imageIndex,
                                   int channelIndex,
                                   int excitationFilterRefIndex)

setChannelLightSourceSettingsAttenuation

void setChannelLightSourceSettingsAttenuation(PercentFraction attenuation,
                                            int imageIndex,
                                            int channelIndex)

setMicrobeamManipulationLightSourceSettingsAttenuation

void setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation,
                                                          int experimentIndex,
                                                          int microbeamManipulationIndex,
                                                          int lightSourceSettingsIndex)

setChannelLightSourceSettingsID

void setChannelLightSourceSettingsID(String id,
                                   int imageIndex,
                                   int channelIndex)

setMicrobeamManipulationLightSourceSettingsID

void setMicrobeamManipulationLightSourceSettingsID(String id,
                                                 int experimentIndex,
                                                 int microbeamManipulationIndex,
                                                 int lightSourceSettingsIndex)

setChannelLightSourceSettingsWavelength

void setChannelLightSourceSettingsWavelength(PositiveInteger wavelength,
                                           int imageIndex,
                                           int channelIndex)

setMicrobeamManipulationLightSourceSettingsWavelength

void setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength,
                                                         int experimentIndex,
                                                         int microbeamManipulationIndex,
                                                         int lightSourceSettingsIndex)

setLineFillColor

void setLineFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)

setLineFillRule

void setLineFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)

setLineFontFamily

void setLineFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)

setLineFontSize

void setLineFontSize(NonNegativeInteger fontSize,
                   int ROIIndex,
                   int shapeIndex)

setLineFontStyle

void setLineFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)

setLineID

void setLineID(String id,
             int ROIIndex,
             int shapeIndex)

setLineLineCap

void setLineLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)

setLineLocked

void setLineLocked(Boolean locked,
                 int ROIIndex,
                 int shapeIndex)

setLineStrokeColor

void setLineStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)

setLineStrokeDashArray

void setLineStrokeDashArray(String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)

setLineStrokeWidth

void setLineStrokeWidth(Double strokeWidth,
                      int ROIIndex,
                      int shapeIndex)

setLineText

void setLineText(String text,
               int ROIIndex,
               int shapeIndex)

setLineTheC

void setLineTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)

setLineTheT

void setLineTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)

setLineTheZ

void setLineTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)

setLineTransform

void setLineTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)

setLineVisible

void setLineVisible(Boolean visible,
                  int ROIIndex,
                  int shapeIndex)

setLineMarkerEnd

void setLineMarkerEnd(Marker markerEnd,
                    int ROIIndex,
                    int shapeIndex)

setLineMarkerStart

void setLineMarkerStart(Marker markerStart,
                      int ROIIndex,
                      int shapeIndex)

setLineX1

void setLineX1(Double x1,
             int ROIIndex,
             int shapeIndex)

setLineX2

void setLineX2(Double x2,
             int ROIIndex,
             int shapeIndex)

setLineY1

void setLineY1(Double y1,
             int ROIIndex,
             int shapeIndex)

setLineY2

void setLineY2(Double y2,
             int ROIIndex,
             int shapeIndex)

setListAnnotationAnnotationRef

void setListAnnotationAnnotationRef(String annotation,
                                  int listAnnotationIndex,
                                  int annotationRefIndex)

setListAnnotationAnnotator

void setListAnnotationAnnotator(String annotator,
                              int listAnnotationIndex)

setListAnnotationDescription

void setListAnnotationDescription(String description,
                                int listAnnotationIndex)

setListAnnotationID

void setListAnnotationID(String id,
                       int listAnnotationIndex)

setListAnnotationNamespace

void setListAnnotationNamespace(String namespace,
                              int listAnnotationIndex)

setLongAnnotationAnnotationRef

void setLongAnnotationAnnotationRef(String annotation,
                                  int longAnnotationIndex,
                                  int annotationRefIndex)

setLongAnnotationAnnotator

void setLongAnnotationAnnotator(String annotator,
                              int longAnnotationIndex)

setLongAnnotationDescription

void setLongAnnotationDescription(String description,
                                int longAnnotationIndex)

setLongAnnotationID

void setLongAnnotationID(String id,
                       int longAnnotationIndex)

setLongAnnotationNamespace

void setLongAnnotationNamespace(String namespace,
                              int longAnnotationIndex)

setLongAnnotationValue

void setLongAnnotationValue(Long value,
                          int longAnnotationIndex)

setMaskFillColor

void setMaskFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)

setMaskFillRule

void setMaskFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)

setMaskFontFamily

void setMaskFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)

setMaskFontSize

void setMaskFontSize(NonNegativeInteger fontSize,
                   int ROIIndex,
                   int shapeIndex)

setMaskFontStyle

void setMaskFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)

setMaskID

void setMaskID(String id,
             int ROIIndex,
             int shapeIndex)

setMaskLineCap

void setMaskLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)

setMaskLocked

void setMaskLocked(Boolean locked,
                 int ROIIndex,
                 int shapeIndex)

setMaskStrokeColor

void setMaskStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)

setMaskStrokeDashArray

void setMaskStrokeDashArray(String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)

setMaskStrokeWidth

void setMaskStrokeWidth(Double strokeWidth,
                      int ROIIndex,
                      int shapeIndex)

setMaskText

void setMaskText(String text,
               int ROIIndex,
               int shapeIndex)

setMaskTheC

void setMaskTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)

setMaskTheT

void setMaskTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)

setMaskTheZ

void setMaskTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)

setMaskTransform

void setMaskTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)

setMaskVisible

void setMaskVisible(Boolean visible,
                  int ROIIndex,
                  int shapeIndex)

setMaskHeight

void setMaskHeight(Double height,
                 int ROIIndex,
                 int shapeIndex)

setMaskWidth

void setMaskWidth(Double width,
                int ROIIndex,
                int shapeIndex)

setMaskX

void setMaskX(Double x,
            int ROIIndex,
            int shapeIndex)

setMaskY

void setMaskY(Double y,
            int ROIIndex,
            int shapeIndex)

setMicrobeamManipulationDescription

void setMicrobeamManipulationDescription(String description,
                                       int experimentIndex,
                                       int microbeamManipulationIndex)

setMicrobeamManipulationExperimenterRef

void setMicrobeamManipulationExperimenterRef(String experimenter,
                                           int experimentIndex,
                                           int microbeamManipulationIndex)

setMicrobeamManipulationID

void setMicrobeamManipulationID(String id,
                              int experimentIndex,
                              int microbeamManipulationIndex)

setMicrobeamManipulationROIRef

void setMicrobeamManipulationROIRef(String roi,
                                  int experimentIndex,
                                  int microbeamManipulationIndex,
                                  int ROIRefIndex)

setMicrobeamManipulationType

void setMicrobeamManipulationType(MicrobeamManipulationType type,
                                int experimentIndex,
                                int microbeamManipulationIndex)

setMicroscopeLotNumber

void setMicroscopeLotNumber(String lotNumber,
                          int instrumentIndex)

setMicroscopeManufacturer

void setMicroscopeManufacturer(String manufacturer,
                             int instrumentIndex)

setMicroscopeModel

void setMicroscopeModel(String model,
                      int instrumentIndex)

setMicroscopeSerialNumber

void setMicroscopeSerialNumber(String serialNumber,
                             int instrumentIndex)

setMicroscopeType

void setMicroscopeType(MicroscopeType type,
                     int instrumentIndex)

setObjectiveCalibratedMagnification

void setObjectiveCalibratedMagnification(Double calibratedMagnification,
                                       int instrumentIndex,
                                       int objectiveIndex)

setObjectiveCorrection

void setObjectiveCorrection(Correction correction,
                          int instrumentIndex,
                          int objectiveIndex)

setObjectiveID

void setObjectiveID(String id,
                  int instrumentIndex,
                  int objectiveIndex)

setObjectiveImmersion

void setObjectiveImmersion(Immersion immersion,
                         int instrumentIndex,
                         int objectiveIndex)

setObjectiveIris

void setObjectiveIris(Boolean iris,
                    int instrumentIndex,
                    int objectiveIndex)

setObjectiveLensNA

void setObjectiveLensNA(Double lensNA,
                      int instrumentIndex,
                      int objectiveIndex)

setObjectiveLotNumber

void setObjectiveLotNumber(String lotNumber,
                         int instrumentIndex,
                         int objectiveIndex)

setObjectiveManufacturer

void setObjectiveManufacturer(String manufacturer,
                            int instrumentIndex,
                            int objectiveIndex)

setObjectiveModel

void setObjectiveModel(String model,
                     int instrumentIndex,
                     int objectiveIndex)

setObjectiveNominalMagnification

void setObjectiveNominalMagnification(Double nominalMagnification,
                                    int instrumentIndex,
                                    int objectiveIndex)

setObjectiveSerialNumber

void setObjectiveSerialNumber(String serialNumber,
                            int instrumentIndex,
                            int objectiveIndex)

setObjectiveWorkingDistance

void setObjectiveWorkingDistance(Double workingDistance,
                               int instrumentIndex,
                               int objectiveIndex)

setObjectiveSettingsCorrectionCollar

void setObjectiveSettingsCorrectionCollar(Double correctionCollar,
                                        int imageIndex)

setObjectiveSettingsID

void setObjectiveSettingsID(String id,
                          int imageIndex)

setObjectiveSettingsMedium

void setObjectiveSettingsMedium(Medium medium,
                              int imageIndex)

setObjectiveSettingsRefractiveIndex

void setObjectiveSettingsRefractiveIndex(Double refractiveIndex,
                                       int imageIndex)

setPixelsAnnotationRef

void setPixelsAnnotationRef(String annotation,
                          int imageIndex,
                          int annotationRefIndex)

setPixelsBigEndian

void setPixelsBigEndian(Boolean bigEndian,
                      int imageIndex)

setPixelsDimensionOrder

void setPixelsDimensionOrder(DimensionOrder dimensionOrder,
                           int imageIndex)

setPixelsID

void setPixelsID(String id,
               int imageIndex)

setPixelsInterleaved

void setPixelsInterleaved(Boolean interleaved,
                        int imageIndex)

setPixelsPhysicalSizeX

void setPixelsPhysicalSizeX(PositiveFloat physicalSizeX,
                          int imageIndex)

setPixelsPhysicalSizeY

void setPixelsPhysicalSizeY(PositiveFloat physicalSizeY,
                          int imageIndex)

setPixelsPhysicalSizeZ

void setPixelsPhysicalSizeZ(PositiveFloat physicalSizeZ,
                          int imageIndex)

setPixelsSignificantBits

void setPixelsSignificantBits(PositiveInteger significantBits,
                            int imageIndex)

setPixelsSizeC

void setPixelsSizeC(PositiveInteger sizeC,
                  int imageIndex)

setPixelsSizeT

void setPixelsSizeT(PositiveInteger sizeT,
                  int imageIndex)

setPixelsSizeX

void setPixelsSizeX(PositiveInteger sizeX,
                  int imageIndex)

setPixelsSizeY

void setPixelsSizeY(PositiveInteger sizeY,
                  int imageIndex)

setPixelsSizeZ

void setPixelsSizeZ(PositiveInteger sizeZ,
                  int imageIndex)

setPixelsTimeIncrement

void setPixelsTimeIncrement(Double timeIncrement,
                          int imageIndex)

setPixelsType

void setPixelsType(PixelType type,
                 int imageIndex)

setPlaneAnnotationRef

void setPlaneAnnotationRef(String annotation,
                         int imageIndex,
                         int planeIndex,
                         int annotationRefIndex)

setPlaneDeltaT

void setPlaneDeltaT(Double deltaT,
                  int imageIndex,
                  int planeIndex)

setPlaneExposureTime

void setPlaneExposureTime(Double exposureTime,
                        int imageIndex,
                        int planeIndex)

setPlaneHashSHA1

void setPlaneHashSHA1(String hashSHA1,
                    int imageIndex,
                    int planeIndex)

setPlanePositionX

void setPlanePositionX(Double positionX,
                     int imageIndex,
                     int planeIndex)

setPlanePositionY

void setPlanePositionY(Double positionY,
                     int imageIndex,
                     int planeIndex)

setPlanePositionZ

void setPlanePositionZ(Double positionZ,
                     int imageIndex,
                     int planeIndex)

setPlaneTheC

void setPlaneTheC(NonNegativeInteger theC,
                int imageIndex,
                int planeIndex)

setPlaneTheT

void setPlaneTheT(NonNegativeInteger theT,
                int imageIndex,
                int planeIndex)

setPlaneTheZ

void setPlaneTheZ(NonNegativeInteger theZ,
                int imageIndex,
                int planeIndex)

setPlateAnnotationRef

void setPlateAnnotationRef(String annotation,
                         int plateIndex,
                         int annotationRefIndex)

setPlateColumnNamingConvention

void setPlateColumnNamingConvention(NamingConvention columnNamingConvention,
                                  int plateIndex)

setPlateColumns

void setPlateColumns(PositiveInteger columns,
                   int plateIndex)

setPlateDescription

void setPlateDescription(String description,
                       int plateIndex)

setPlateExternalIdentifier

void setPlateExternalIdentifier(String externalIdentifier,
                              int plateIndex)

setPlateFieldIndex

void setPlateFieldIndex(NonNegativeInteger fieldIndex,
                      int plateIndex)

setPlateID

void setPlateID(String id,
              int plateIndex)

setPlateName

void setPlateName(String name,
                int plateIndex)

setPlateRowNamingConvention

void setPlateRowNamingConvention(NamingConvention rowNamingConvention,
                               int plateIndex)

setPlateRows

void setPlateRows(PositiveInteger rows,
                int plateIndex)

setPlateStatus

void setPlateStatus(String status,
                  int plateIndex)

setPlateWellOriginX

void setPlateWellOriginX(Double wellOriginX,
                       int plateIndex)

setPlateWellOriginY

void setPlateWellOriginY(Double wellOriginY,
                       int plateIndex)

setPlateAcquisitionAnnotationRef

void setPlateAcquisitionAnnotationRef(String annotation,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int annotationRefIndex)

setPlateAcquisitionDescription

void setPlateAcquisitionDescription(String description,
                                  int plateIndex,
                                  int plateAcquisitionIndex)

setPlateAcquisitionEndTime

void setPlateAcquisitionEndTime(Timestamp endTime,
                              int plateIndex,
                              int plateAcquisitionIndex)

setPlateAcquisitionID

void setPlateAcquisitionID(String id,
                         int plateIndex,
                         int plateAcquisitionIndex)

setPlateAcquisitionMaximumFieldCount

void setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
                                        int plateIndex,
                                        int plateAcquisitionIndex)

setPlateAcquisitionName

void setPlateAcquisitionName(String name,
                           int plateIndex,
                           int plateAcquisitionIndex)

setPlateAcquisitionStartTime

void setPlateAcquisitionStartTime(Timestamp startTime,
                                int plateIndex,
                                int plateAcquisitionIndex)

setPlateAcquisitionWellSampleRef

void setPlateAcquisitionWellSampleRef(String wellSample,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int wellSampleRefIndex)

setPointFillColor

void setPointFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)

setPointFillRule

void setPointFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)

setPointFontFamily

void setPointFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)

setPointFontSize

void setPointFontSize(NonNegativeInteger fontSize,
                    int ROIIndex,
                    int shapeIndex)

setPointFontStyle

void setPointFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)

setPointID

void setPointID(String id,
              int ROIIndex,
              int shapeIndex)

setPointLineCap

void setPointLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)

setPointLocked

void setPointLocked(Boolean locked,
                  int ROIIndex,
                  int shapeIndex)

setPointStrokeColor

void setPointStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)

setPointStrokeDashArray

void setPointStrokeDashArray(String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)

setPointStrokeWidth

void setPointStrokeWidth(Double strokeWidth,
                       int ROIIndex,
                       int shapeIndex)

setPointText

void setPointText(String text,
                int ROIIndex,
                int shapeIndex)

setPointTheC

void setPointTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)

setPointTheT

void setPointTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)

setPointTheZ

void setPointTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)

setPointTransform

void setPointTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)

setPointVisible

void setPointVisible(Boolean visible,
                   int ROIIndex,
                   int shapeIndex)

setPointX

void setPointX(Double x,
             int ROIIndex,
             int shapeIndex)

setPointY

void setPointY(Double y,
             int ROIIndex,
             int shapeIndex)

setPolygonFillColor

void setPolygonFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)

setPolygonFillRule

void setPolygonFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)

setPolygonFontFamily

void setPolygonFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)

setPolygonFontSize

void setPolygonFontSize(NonNegativeInteger fontSize,
                      int ROIIndex,
                      int shapeIndex)

setPolygonFontStyle

void setPolygonFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)

setPolygonID

void setPolygonID(String id,
                int ROIIndex,
                int shapeIndex)

setPolygonLineCap

void setPolygonLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)

setPolygonLocked

void setPolygonLocked(Boolean locked,
                    int ROIIndex,
                    int shapeIndex)

setPolygonStrokeColor

void setPolygonStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)

setPolygonStrokeDashArray

void setPolygonStrokeDashArray(String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)

setPolygonStrokeWidth

void setPolygonStrokeWidth(Double strokeWidth,
                         int ROIIndex,
                         int shapeIndex)

setPolygonText

void setPolygonText(String text,
                  int ROIIndex,
                  int shapeIndex)

setPolygonTheC

void setPolygonTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)

setPolygonTheT

void setPolygonTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)

setPolygonTheZ

void setPolygonTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)

setPolygonTransform

void setPolygonTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)

setPolygonVisible

void setPolygonVisible(Boolean visible,
                     int ROIIndex,
                     int shapeIndex)

setPolygonPoints

void setPolygonPoints(String points,
                    int ROIIndex,
                    int shapeIndex)

setPolylineFillColor

void setPolylineFillColor(Color fillColor,
                        int ROIIndex,
                        int shapeIndex)

setPolylineFillRule

void setPolylineFillRule(FillRule fillRule,
                       int ROIIndex,
                       int shapeIndex)

setPolylineFontFamily

void setPolylineFontFamily(FontFamily fontFamily,
                         int ROIIndex,
                         int shapeIndex)

setPolylineFontSize

void setPolylineFontSize(NonNegativeInteger fontSize,
                       int ROIIndex,
                       int shapeIndex)

setPolylineFontStyle

void setPolylineFontStyle(FontStyle fontStyle,
                        int ROIIndex,
                        int shapeIndex)

setPolylineID

void setPolylineID(String id,
                 int ROIIndex,
                 int shapeIndex)

setPolylineLineCap

void setPolylineLineCap(LineCap lineCap,
                      int ROIIndex,
                      int shapeIndex)

setPolylineLocked

void setPolylineLocked(Boolean locked,
                     int ROIIndex,
                     int shapeIndex)

setPolylineStrokeColor

void setPolylineStrokeColor(Color strokeColor,
                          int ROIIndex,
                          int shapeIndex)

setPolylineStrokeDashArray

void setPolylineStrokeDashArray(String strokeDashArray,
                              int ROIIndex,
                              int shapeIndex)

setPolylineStrokeWidth

void setPolylineStrokeWidth(Double strokeWidth,
                          int ROIIndex,
                          int shapeIndex)

setPolylineText

void setPolylineText(String text,
                   int ROIIndex,
                   int shapeIndex)

setPolylineTheC

void setPolylineTheC(NonNegativeInteger theC,
                   int ROIIndex,
                   int shapeIndex)

setPolylineTheT

void setPolylineTheT(NonNegativeInteger theT,
                   int ROIIndex,
                   int shapeIndex)

setPolylineTheZ

void setPolylineTheZ(NonNegativeInteger theZ,
                   int ROIIndex,
                   int shapeIndex)

setPolylineTransform

void setPolylineTransform(AffineTransform transform,
                        int ROIIndex,
                        int shapeIndex)

setPolylineVisible

void setPolylineVisible(Boolean visible,
                      int ROIIndex,
                      int shapeIndex)

setPolylineMarkerEnd

void setPolylineMarkerEnd(Marker markerEnd,
                        int ROIIndex,
                        int shapeIndex)

setPolylineMarkerStart

void setPolylineMarkerStart(Marker markerStart,
                          int ROIIndex,
                          int shapeIndex)

setPolylinePoints

void setPolylinePoints(String points,
                     int ROIIndex,
                     int shapeIndex)

setProjectAnnotationRef

void setProjectAnnotationRef(String annotation,
                           int projectIndex,
                           int annotationRefIndex)

setProjectDatasetRef

void setProjectDatasetRef(String dataset,
                        int projectIndex,
                        int datasetRefIndex)

setProjectDescription

void setProjectDescription(String description,
                         int projectIndex)

setProjectExperimenterGroupRef

void setProjectExperimenterGroupRef(String experimenterGroup,
                                  int projectIndex)

setProjectExperimenterRef

void setProjectExperimenterRef(String experimenter,
                             int projectIndex)

setProjectID

void setProjectID(String id,
                int projectIndex)

setProjectName

void setProjectName(String name,
                  int projectIndex)

setROIAnnotationRef

void setROIAnnotationRef(String annotation,
                       int ROIIndex,
                       int annotationRefIndex)

setROIDescription

void setROIDescription(String description,
                     int ROIIndex)

setROIID

void setROIID(String id,
            int ROIIndex)

setROIName

void setROIName(String name,
              int ROIIndex)

setROINamespace

void setROINamespace(String namespace,
                   int ROIIndex)

setReagentAnnotationRef

void setReagentAnnotationRef(String annotation,
                           int screenIndex,
                           int reagentIndex,
                           int annotationRefIndex)

setReagentDescription

void setReagentDescription(String description,
                         int screenIndex,
                         int reagentIndex)

setReagentID

void setReagentID(String id,
                int screenIndex,
                int reagentIndex)

setReagentName

void setReagentName(String name,
                  int screenIndex,
                  int reagentIndex)

setReagentReagentIdentifier

void setReagentReagentIdentifier(String reagentIdentifier,
                               int screenIndex,
                               int reagentIndex)

setRectangleFillColor

void setRectangleFillColor(Color fillColor,
                         int ROIIndex,
                         int shapeIndex)

setRectangleFillRule

void setRectangleFillRule(FillRule fillRule,
                        int ROIIndex,
                        int shapeIndex)

setRectangleFontFamily

void setRectangleFontFamily(FontFamily fontFamily,
                          int ROIIndex,
                          int shapeIndex)

setRectangleFontSize

void setRectangleFontSize(NonNegativeInteger fontSize,
                        int ROIIndex,
                        int shapeIndex)

setRectangleFontStyle

void setRectangleFontStyle(FontStyle fontStyle,
                         int ROIIndex,
                         int shapeIndex)

setRectangleID

void setRectangleID(String id,
                  int ROIIndex,
                  int shapeIndex)

setRectangleLineCap

void setRectangleLineCap(LineCap lineCap,
                       int ROIIndex,
                       int shapeIndex)

setRectangleLocked

void setRectangleLocked(Boolean locked,
                      int ROIIndex,
                      int shapeIndex)

setRectangleStrokeColor

void setRectangleStrokeColor(Color strokeColor,
                           int ROIIndex,
                           int shapeIndex)

setRectangleStrokeDashArray

void setRectangleStrokeDashArray(String strokeDashArray,
                               int ROIIndex,
                               int shapeIndex)

setRectangleStrokeWidth

void setRectangleStrokeWidth(Double strokeWidth,
                           int ROIIndex,
                           int shapeIndex)

setRectangleText

void setRectangleText(String text,
                    int ROIIndex,
                    int shapeIndex)

setRectangleTheC

void setRectangleTheC(NonNegativeInteger theC,
                    int ROIIndex,
                    int shapeIndex)

setRectangleTheT

void setRectangleTheT(NonNegativeInteger theT,
                    int ROIIndex,
                    int shapeIndex)

setRectangleTheZ

void setRectangleTheZ(NonNegativeInteger theZ,
                    int ROIIndex,
                    int shapeIndex)

setRectangleTransform

void setRectangleTransform(AffineTransform transform,
                         int ROIIndex,
                         int shapeIndex)

setRectangleVisible

void setRectangleVisible(Boolean visible,
                       int ROIIndex,
                       int shapeIndex)

setRectangleHeight

void setRectangleHeight(Double height,
                      int ROIIndex,
                      int shapeIndex)

setRectangleWidth

void setRectangleWidth(Double width,
                     int ROIIndex,
                     int shapeIndex)

setRectangleX

void setRectangleX(Double x,
                 int ROIIndex,
                 int shapeIndex)

setRectangleY

void setRectangleY(Double y,
                 int ROIIndex,
                 int shapeIndex)

setRightsRightsHeld

void setRightsRightsHeld(String rightsHeld)

setRightsRightsHolder

void setRightsRightsHolder(String rightsHolder)

setScreenAnnotationRef

void setScreenAnnotationRef(String annotation,
                          int screenIndex,
                          int annotationRefIndex)

setScreenDescription

void setScreenDescription(String description,
                        int screenIndex)

setScreenID

void setScreenID(String id,
               int screenIndex)

setScreenName

void setScreenName(String name,
                 int screenIndex)

setScreenPlateRef

void setScreenPlateRef(String plate,
                     int screenIndex,
                     int plateRefIndex)

setScreenProtocolDescription

void setScreenProtocolDescription(String protocolDescription,
                                int screenIndex)

setScreenProtocolIdentifier

void setScreenProtocolIdentifier(String protocolIdentifier,
                               int screenIndex)

setScreenReagentSetDescription

void setScreenReagentSetDescription(String reagentSetDescription,
                                  int screenIndex)

setScreenReagentSetIdentifier

void setScreenReagentSetIdentifier(String reagentSetIdentifier,
                                 int screenIndex)

setScreenType

void setScreenType(String type,
                 int screenIndex)

setStageLabelName

void setStageLabelName(String name,
                     int imageIndex)

setStageLabelX

void setStageLabelX(Double x,
                  int imageIndex)

setStageLabelY

void setStageLabelY(Double y,
                  int imageIndex)

setStageLabelZ

void setStageLabelZ(Double z,
                  int imageIndex)

setTagAnnotationAnnotationRef

void setTagAnnotationAnnotationRef(String annotation,
                                 int tagAnnotationIndex,
                                 int annotationRefIndex)

setTagAnnotationAnnotator

void setTagAnnotationAnnotator(String annotator,
                             int tagAnnotationIndex)

setTagAnnotationDescription

void setTagAnnotationDescription(String description,
                               int tagAnnotationIndex)

setTagAnnotationID

void setTagAnnotationID(String id,
                      int tagAnnotationIndex)

setTagAnnotationNamespace

void setTagAnnotationNamespace(String namespace,
                             int tagAnnotationIndex)

setTagAnnotationValue

void setTagAnnotationValue(String value,
                         int tagAnnotationIndex)

setTermAnnotationAnnotationRef

void setTermAnnotationAnnotationRef(String annotation,
                                  int termAnnotationIndex,
                                  int annotationRefIndex)

setTermAnnotationAnnotator

void setTermAnnotationAnnotator(String annotator,
                              int termAnnotationIndex)

setTermAnnotationDescription

void setTermAnnotationDescription(String description,
                                int termAnnotationIndex)

setTermAnnotationID

void setTermAnnotationID(String id,
                       int termAnnotationIndex)

setTermAnnotationNamespace

void setTermAnnotationNamespace(String namespace,
                              int termAnnotationIndex)

setTermAnnotationValue

void setTermAnnotationValue(String value,
                          int termAnnotationIndex)

setTiffDataFirstC

void setTiffDataFirstC(NonNegativeInteger firstC,
                     int imageIndex,
                     int tiffDataIndex)

setTiffDataFirstT

void setTiffDataFirstT(NonNegativeInteger firstT,
                     int imageIndex,
                     int tiffDataIndex)

setTiffDataFirstZ

void setTiffDataFirstZ(NonNegativeInteger firstZ,
                     int imageIndex,
                     int tiffDataIndex)

setTiffDataIFD

void setTiffDataIFD(NonNegativeInteger ifd,
                  int imageIndex,
                  int tiffDataIndex)

setTiffDataPlaneCount

void setTiffDataPlaneCount(NonNegativeInteger planeCount,
                         int imageIndex,
                         int tiffDataIndex)

setTimestampAnnotationAnnotationRef

void setTimestampAnnotationAnnotationRef(String annotation,
                                       int timestampAnnotationIndex,
                                       int annotationRefIndex)

setTimestampAnnotationAnnotator

void setTimestampAnnotationAnnotator(String annotator,
                                   int timestampAnnotationIndex)

setTimestampAnnotationDescription

void setTimestampAnnotationDescription(String description,
                                     int timestampAnnotationIndex)

setTimestampAnnotationID

void setTimestampAnnotationID(String id,
                            int timestampAnnotationIndex)

setTimestampAnnotationNamespace

void setTimestampAnnotationNamespace(String namespace,
                                   int timestampAnnotationIndex)

setTimestampAnnotationValue

void setTimestampAnnotationValue(Timestamp value,
                               int timestampAnnotationIndex)

setTransmittanceRangeCutIn

void setTransmittanceRangeCutIn(PositiveInteger cutIn,
                              int instrumentIndex,
                              int filterIndex)

setTransmittanceRangeCutInTolerance

void setTransmittanceRangeCutInTolerance(NonNegativeInteger cutInTolerance,
                                       int instrumentIndex,
                                       int filterIndex)

setTransmittanceRangeCutOut

void setTransmittanceRangeCutOut(PositiveInteger cutOut,
                               int instrumentIndex,
                               int filterIndex)

setTransmittanceRangeCutOutTolerance

void setTransmittanceRangeCutOutTolerance(NonNegativeInteger cutOutTolerance,
                                        int instrumentIndex,
                                        int filterIndex)

setTransmittanceRangeTransmittance

void setTransmittanceRangeTransmittance(PercentFraction transmittance,
                                      int instrumentIndex,
                                      int filterIndex)

setUUIDValue

void setUUIDValue(String value,
                int imageIndex,
                int tiffDataIndex)

setUUIDFileName

void setUUIDFileName(String fileName,
                   int imageIndex,
                   int tiffDataIndex)

setWellAnnotationRef

void setWellAnnotationRef(String annotation,
                        int plateIndex,
                        int wellIndex,
                        int annotationRefIndex)

setWellColor

void setWellColor(Color color,
                int plateIndex,
                int wellIndex)

setWellColumn

void setWellColumn(NonNegativeInteger column,
                 int plateIndex,
                 int wellIndex)

setWellExternalDescription

void setWellExternalDescription(String externalDescription,
                              int plateIndex,
                              int wellIndex)

setWellExternalIdentifier

void setWellExternalIdentifier(String externalIdentifier,
                             int plateIndex,
                             int wellIndex)

setWellID

void setWellID(String id,
             int plateIndex,
             int wellIndex)

setWellReagentRef

void setWellReagentRef(String reagent,
                     int plateIndex,
                     int wellIndex)

setWellRow

void setWellRow(NonNegativeInteger row,
              int plateIndex,
              int wellIndex)

setWellType

void setWellType(String type,
               int plateIndex,
               int wellIndex)

setWellSampleAnnotationRef

void setWellSampleAnnotationRef(String annotation,
                              int plateIndex,
                              int wellIndex,
                              int wellSampleIndex,
                              int annotationRefIndex)

setWellSampleID

void setWellSampleID(String id,
                   int plateIndex,
                   int wellIndex,
                   int wellSampleIndex)

setWellSampleImageRef

void setWellSampleImageRef(String image,
                         int plateIndex,
                         int wellIndex,
                         int wellSampleIndex)

setWellSampleIndex

void setWellSampleIndex(NonNegativeInteger index,
                      int plateIndex,
                      int wellIndex,
                      int wellSampleIndex)

setWellSamplePositionX

void setWellSamplePositionX(Double positionX,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)

setWellSamplePositionY

void setWellSamplePositionY(Double positionY,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)

setWellSampleTimepoint

void setWellSampleTimepoint(Timestamp timepoint,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)

setXMLAnnotationAnnotationRef

void setXMLAnnotationAnnotationRef(String annotation,
                                 int XMLAnnotationIndex,
                                 int annotationRefIndex)

setXMLAnnotationAnnotator

void setXMLAnnotationAnnotator(String annotator,
                             int XMLAnnotationIndex)

setXMLAnnotationDescription

void setXMLAnnotationDescription(String description,
                               int XMLAnnotationIndex)

setXMLAnnotationID

void setXMLAnnotationID(String id,
                      int XMLAnnotationIndex)

setXMLAnnotationNamespace

void setXMLAnnotationNamespace(String namespace,
                             int XMLAnnotationIndex)

setXMLAnnotationValue

void setXMLAnnotationValue(String value,
                         int XMLAnnotationIndex)

Interface MetadataStore

Method Summary

Method Detail

createRoot

getRoot

setRoot

setRoot

setPixelsBinDataBigEndian

setMaskBinData

setUUID

setArcID

setArcLotNumber

setArcManufacturer

setArcModel

setArcPower

setArcSerialNumber

setArcType

setBinaryFileFileName

setBinaryFileMIMEType

setBinaryFileSize

setBinaryOnlyMetadataFile

setBinaryOnlyUUID

setBooleanAnnotationAnnotationRef

setBooleanAnnotationAnnotator

setBooleanAnnotationDescription

setBooleanAnnotationID

setBooleanAnnotationNamespace

setBooleanAnnotationValue

setChannelAcquisitionMode

setChannelAnnotationRef

setChannelColor

setChannelContrastMethod

setChannelEmissionWavelength

setChannelExcitationWavelength

setChannelFilterSetRef

setChannelFluor

setChannelID

setChannelIlluminationType

setChannelNDFilter

setChannelName

setChannelPinholeSize

setChannelPockelCellSetting

setChannelSamplesPerPixel

setCommentAnnotationAnnotationRef

setCommentAnnotationAnnotator

setCommentAnnotationDescription

setCommentAnnotationID

setCommentAnnotationNamespace

setCommentAnnotationValue

setDatasetAnnotationRef

setDatasetDescription

setDatasetExperimenterGroupRef

setDatasetExperimenterRef

setDatasetID

setDatasetImageRef

setDatasetName

setDetectorAmplificationGain

setDetectorGain

setDetectorID

setDetectorLotNumber

setDetectorManufacturer

setDetectorModel

setDetectorOffset

setDetectorSerialNumber

setDetectorType

setDetectorVoltage

setDetectorZoom

setDetectorSettingsBinning

setDetectorSettingsGain

setDetectorSettingsID

setDetectorSettingsIntegration

setDetectorSettingsOffset

setDetectorSettingsReadOutRate

setDetectorSettingsVoltage

setDetectorSettingsZoom

setDichroicID

setDichroicLotNumber

setDichroicManufacturer

setDichroicModel

setDichroicSerialNumber