Hierarchy For All Packages

Package Hierarchies:

• loci.formats,
• loci.formats.cache,
• loci.formats.codec,
• loci.formats.gui,
• loci.formats.in,
• loci.formats.meta,
• loci.formats.ome,
• loci.formats.out,
• loci.formats.services,
• loci.formats.tiff,
• loci.formats.tools,
• loci.plugins,
• loci.plugins.config,
• loci.plugins.in,
• loci.plugins.macro,
• loci.plugins.out,
• loci.plugins.prefs,
• loci.plugins.shortcut,
• loci.plugins.util,
• org.libjpegturbo.turbojpeg

Class Hierarchy

• java.lang.Object
  • loci.plugins.About (implements ij.plugin.PlugIn)
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • loci.formats.tiff.IFDList
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • loci.formats.tiff.IFD
      • loci.plugins.in.ImporterMetadata
      • loci.formats.in.PrairieMetadata.ValueTable (implements loci.formats.in.PrairieMetadata.Value)
  • ome.xml.model.AbstractOMEModelObject (implements ome.xml.model.OMEModelObject)
    • ome.xml.model.Annotation
      • ome.xml.model.TextAnnotation
        • ome.xml.model.XMLAnnotation
          • loci.formats.meta.ModuloAnnotation
          • loci.formats.meta.OriginalMetadataAnnotation
  • ome.xml.meta.AbstractOMEXMLMetadata (implements ome.xml.meta.OMEXMLMetadata)
    • loci.formats.ome.AbstractOMEXMLMetadata (implements loci.formats.ome.OMEXMLMetadata)
    • ome.xml.meta.OMEXMLMetadataImpl
      • loci.formats.ome.OMEXMLMetadataImpl (implements loci.formats.ome.OMEXMLMetadata)
        • loci.formats.ome.OMEPyramidStore (implements loci.formats.meta.IPyramidStore)
  • loci.common.services.AbstractService (implements loci.common.services.Service)
    • loci.formats.services.EXIFServiceImpl (implements loci.formats.services.EXIFService)
    • loci.formats.services.JAIIIOServiceImpl (implements loci.formats.services.JAIIIOService)
    • loci.formats.services.JHDFServiceImpl (implements loci.formats.services.JHDFService)
    • loci.formats.services.JPEGXRServiceImpl (implements loci.formats.services.JPEGXRService)
    • loci.formats.services.LuraWaveServiceImpl (implements loci.formats.services.LuraWaveService)
    • loci.formats.services.MDBServiceImpl (implements loci.formats.services.MDBService)
    • loci.formats.services.NetCDFServiceImpl (implements com.esotericsoftware.kryo.KryoSerializable, loci.formats.services.NetCDFService)
    • loci.formats.services.OMEXMLServiceImpl (implements loci.formats.services.OMEXMLService)
    • loci.formats.services.POIServiceImpl (implements loci.formats.services.POIService)
    • loci.formats.services.WlzServiceImpl (implements loci.formats.services.WlzService)
  • loci.formats.tools.AmiraParameters
  • loci.formats.in.AmiraReader.ASCII (implements loci.formats.in.AmiraReader.PlaneReader)
  • loci.formats.in.AmiraReader.HxRLE (implements loci.formats.in.AmiraReader.PlaneReader)
  • loci.formats.in.AmiraReader.HxZip (implements loci.formats.in.AmiraReader.PlaneReader)
  • loci.formats.in.APNGReader.PNGBlock
  • loci.formats.tools.AsciiImage
  • loci.formats.gui.AWTImageTools
  • loci.formats.AxisGuesser
  • loci.formats.codec.BaseCodec (implements loci.formats.codec.Codec)
    • loci.formats.codec.JPEGXRCodec
    • loci.formats.codec.NikonCodec
    • loci.formats.codec.TargaRLECodec
    • loci.formats.codec.WrappedCodec
      • loci.formats.codec.Base64Codec
      • loci.formats.codec.HuffmanCodec
      • loci.formats.codec.JPEG2000Codec
      • loci.formats.codec.JPEGCodec
      • loci.formats.codec.LosslessJPEGCodec
      • loci.formats.codec.LuraWaveCodec
      • loci.formats.codec.LZOCodec
      • loci.formats.codec.LZWCodec
      • loci.formats.codec.MJPBCodec
      • loci.formats.codec.MSRLECodec
      • loci.formats.codec.MSVideoCodec
      • loci.formats.codec.PackbitsCodec
      • loci.formats.codec.PassthroughCodec
      • loci.formats.codec.QTRLECodec
      • loci.formats.codec.RPZACodec
      • loci.formats.codec.ZlibCodec
  • loci.formats.in.BaseZeissReader.Layer
  • loci.formats.in.BaseZeissReader.Shape
  • loci.formats.in.BaseZeissReader.Tag
  • loci.formats.in.BDVReader.H5Constants
  • loci.formats.in.BDVReader.H5Coordinate
  • loci.plugins.BF
  • loci.formats.tools.BioFormatsExtensionPrinter
  • loci.formats.in.BioRadReader.Note
  • loci.formats.codec.BitBuffer
  • loci.formats.codec.BitWriter
  • loci.formats.gui.BufferedImageSource (implements loci.formats.cache.ICacheSource)
  • loci.formats.codec.ByteVector
  • loci.formats.cache.Cache (implements loci.formats.cache.CacheReporter)
  • loci.formats.tools.CacheConsole
  • loci.formats.cache.CacheEvent
  • loci.formats.cache.CacheSource (implements loci.formats.cache.ICacheSource)
    • loci.formats.cache.ByteArraySource
  • loci.formats.cache.CacheStrategy (implements loci.formats.cache.CacheReporter, java.util.Comparator<T>, loci.formats.cache.ICacheStrategy)
    • loci.formats.cache.CrosshairStrategy
    • loci.formats.cache.RectangleStrategy
  • loci.plugins.in.Calibrator
  • loci.formats.in.CellH5Reader.CellH5Constants
  • loci.formats.in.CellH5Reader.CellH5Coordinate
  • loci.formats.in.CellomicsReader.ChannelFile
  • loci.formats.in.CellSensReader.Pyramid
  • loci.formats.in.CellSensReader.TileCoordinate
  • loci.plugins.config.CellSensWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • loci.formats.in.CellVoyagerReader.AreaInfo
  • loci.formats.in.CellVoyagerReader.ChannelInfo
  • loci.formats.in.CellVoyagerReader.FieldInfo
  • loci.formats.in.CellVoyagerReader.WellInfo
  • loci.formats.ClassList<T>
  • loci.formats.codec.CodecOptions
    • loci.formats.codec.HuffmanCodecOptions
    • loci.formats.codec.JPEG2000CodecOptions
    • loci.formats.codec.MJPBCodecOptions
    • loci.formats.codec.NikonCodecOptions
  • loci.plugins.in.Colorizer
  • java.awt.image.ColorModel (implements java.awt.Transparency)
    • loci.formats.gui.Index16ColorModel
    • loci.formats.gui.SignedColorModel
    • loci.formats.gui.UnsignedIntColorModel
  • java.awt.color.ColorSpace (implements java.io.Serializable)
    • loci.formats.gui.TwoChannelColorSpace
  • loci.formats.in.ColumbusReader.Plane
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • loci.formats.gui.CacheIndicator (implements loci.formats.cache.CacheListener)
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.tree.DefaultTreeCellRenderer (implements javax.swing.tree.TreeCellRenderer)
            • loci.formats.gui.XMLCellRenderer
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • loci.formats.gui.CacheComponent (implements java.awt.event.ActionListener, loci.formats.cache.CacheListener, javax.swing.event.ChangeListener)
          • loci.formats.gui.DataConverter.RowPanel
          • loci.formats.gui.PreviewPane (implements java.beans.PropertyChangeListener, java.lang.Runnable)
          • loci.plugins.shortcut.ShortcutPanel (implements java.awt.event.ActionListener, ij.plugin.PlugIn)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • loci.plugins.util.SearchableWindow.SearchBox (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • ij.gui.ImageWindow (implements java.awt.event.FocusListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
            • ij.gui.StackWindow (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.MouseWheelListener, java.lang.Runnable)
              • loci.plugins.util.DataBrowser
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • loci.plugins.util.BrowserOptionsWindow
            • loci.plugins.config.ConfigWindow (implements java.awt.event.ActionListener, java.awt.event.ItemListener, javax.swing.event.ListSelectionListener, java.lang.Runnable)
            • loci.formats.gui.DataConverter (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.lang.Runnable)
            • loci.formats.tools.EditTiffG (implements java.awt.event.ActionListener)
            • loci.formats.gui.ImageViewer (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.awt.event.KeyListener, java.awt.event.MouseMotionListener, java.lang.Runnable, java.awt.event.WindowListener)
            • loci.plugins.config.InstallWizard
            • loci.formats.gui.XMLWindow
          • ij.text.TextWindow (implements java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener)
            • loci.plugins.util.SearchableWindow
  • loci.plugins.in.Concatenator
  • ch.qos.logback.core.spi.ContextAwareBase (implements ch.qos.logback.core.spi.ContextAware)
    • ch.qos.logback.core.AppenderBase<E> (implements ch.qos.logback.core.Appender<E>)
      • loci.plugins.util.IJStatusEchoer
  • loci.formats.CoreMetadata (implements java.lang.Cloneable)
    • loci.formats.in.OMETiffReader.OMETiffCoreMetadata
    • loci.formats.in.SVSCoreMetadata
    • loci.formats.SwappableMetadata
  • loci.formats.in.CV7000Reader.Channel
  • loci.formats.in.CV7000Reader.LightSource
  • loci.formats.in.CV7000Reader.MinMax
  • loci.formats.in.CV7000Reader.Plane
  • java.awt.image.DataBuffer
    • loci.formats.gui.SignedByteBuffer
    • loci.formats.gui.SignedShortBuffer
    • loci.formats.gui.UnsignedIntBuffer
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • loci.common.xml.BaseHandler
      • loci.formats.in.AFIReader.AFIHandler
      • loci.formats.in.BDVReader.BDVXMLHandler
      • loci.formats.in.BioRadReader.BioRadHandler
      • loci.formats.in.BioRadSCNReader.SCNHandler
      • loci.formats.in.ColumbusReader.MeasurementHandler
      • loci.formats.in.CV7000Reader.MeasurementDataHandler
      • loci.formats.in.CV7000Reader.MeasurementDetailHandler
      • loci.formats.in.CV7000Reader.MeasurementSettingsHandler
      • loci.formats.in.CV7000Reader.WPIHandler
      • loci.formats.in.FEITiffReader.FEIHandler
      • loci.formats.in.FlexReader.FlexHandler
      • loci.formats.in.FlexReader.MeaHandler
      • loci.formats.in.FlexReader.ResHandler
      • loci.formats.in.ImaconReader.ImaconHandler
      • loci.formats.in.InCellReader.InCellHandler
      • loci.formats.in.InCellReader.MinimalInCellHandler
      • loci.formats.in.IvisionReader.IvisionHandler
      • loci.formats.in.LeicaHandler
      • loci.formats.in.MetamorphHandler
      • loci.formats.in.MicromanagerReader.MicromanagerHandler
      • loci.formats.in.ND2Handler
      • loci.formats.in.OMEXMLReader.OMEXMLHandler
      • loci.formats.out.OMEXMLWriter.OMEHandler
      • loci.formats.in.OperettaReader.OperettaHandler
      • loci.formats.in.ScanrReader.ScanrHandler
    • loci.formats.in.LeicaSCNReader.LeicaSCNHandler
    • loci.formats.in.ZeissTIFFHandler
  • loci.formats.in.DefaultMetadataOptions (implements loci.formats.in.MetadataOptions)
  • loci.formats.in.DeltavisionReader.DVExtHdrFields
  • loci.plugins.in.DisplayHandler (implements loci.common.StatusListener)
  • ome.xml.meta.DummyMetadata (implements ome.xml.meta.IMetadata)
    • loci.formats.meta.DummyMetadata (implements loci.formats.meta.IMetadata)
  • loci.formats.in.DynamicMetadataOptions (implements loci.formats.in.MetadataOptions)
  • loci.plugins.out.Exporter
  • loci.formats.tools.FakeImage
  • javax.swing.filechooser.FileFilter
    • loci.formats.gui.ComboFileFilter (implements java.lang.Comparable<T>, java.io.FileFilter)
    • loci.formats.gui.ExtensionFileFilter (implements java.lang.Comparable<T>, java.io.FileFilter)
    • loci.formats.gui.FormatFileFilter (implements java.lang.Comparable<T>, java.io.FileFilter)
    • loci.formats.gui.NoExtensionFileFilter (implements java.lang.Comparable<T>, java.io.FileFilter)
  • loci.formats.FileInfo
  • loci.formats.FilePattern
  • loci.formats.FilePatternBlock
  • loci.formats.FileStitcher.ExternalSeries
  • ome.xml.meta.FilterMetadata (implements ome.xml.meta.MetadataStore)
    • loci.formats.meta.FilterMetadata (implements loci.formats.meta.MetadataStore)
  • loci.formats.in.FlexReader.FilterGroup
  • loci.formats.in.FlexReader.FlexFile
  • loci.plugins.config.FlexWidgets (implements javax.swing.event.DocumentListener, loci.plugins.config.IFormatWidgets)
  • loci.plugins.config.FormatEntry (implements java.lang.Comparable<T>)
  • loci.formats.FormatHandler (implements loci.formats.IFormatHandler)
    • loci.formats.FormatReader (implements loci.formats.IFormatReader)
      • loci.formats.in.AFIReader
      • loci.formats.in.AIMReader
      • loci.formats.in.AliconaReader
      • loci.formats.in.AmiraReader
      • loci.formats.in.AnalyzeReader
      • loci.formats.in.APLReader
      • loci.formats.in.APNGReader
      • loci.formats.in.ARFReader
      • loci.formats.in.AVIReader
      • loci.formats.in.BaseZeissReader
        • loci.formats.in.ZeissTIFFReader
        • loci.formats.in.ZeissZVIReader
      • loci.formats.in.BDReader
      • loci.formats.in.BDVReader
      • loci.formats.in.BIFormatReader
        • loci.formats.in.ImageIOReader
          • loci.formats.in.JPEGReader.DefaultJPEGReader
        • loci.formats.in.LegacyQTReader
        • loci.formats.in.MNGReader
        • loci.formats.in.TiffJAIReader
      • loci.formats.in.BioRadGelReader
      • loci.formats.in.BioRadReader
      • loci.formats.in.BioRadSCNReader
      • loci.formats.in.BMPReader
      • loci.formats.in.BrukerReader
      • loci.formats.in.BurleighReader
      • loci.formats.in.CanonRawReader
      • loci.formats.in.CellH5Reader
      • loci.formats.in.CellomicsReader
      • loci.formats.in.CellSensReader
      • loci.formats.in.CellVoyagerReader
      • loci.formats.in.CellWorxReader
      • loci.formats.in.ColumbusReader
      • loci.formats.in.CV7000Reader
      • loci.formats.DelegateReader
        • loci.formats.in.JPEGReader
        • loci.formats.in.ND2Reader
        • loci.formats.in.QTReader
        • loci.formats.in.TiffDelegateReader
      • loci.formats.in.DeltavisionReader
        • loci.formats.in.RCPNLReader
      • loci.formats.in.DicomReader
      • loci.formats.in.Ecat7Reader
      • loci.formats.in.EPSReader
      • loci.formats.in.FakeReader
      • loci.formats.in.FEIReader
      • loci.formats.in.FitsReader
      • loci.formats.in.FlexReader
      • loci.formats.in.FlowSightReader
      • loci.formats.in.FujiReader
      • loci.formats.in.FV1000Reader
      • loci.formats.in.GatanDM2Reader
      • loci.formats.in.GatanReader
      • loci.formats.in.GIFReader
      • loci.formats.in.HamamatsuVMSReader
      • loci.formats.in.HISReader
      • loci.formats.in.HitachiReader
      • loci.formats.in.HRDGDFReader
      • loci.formats.in.I2IReader
      • loci.formats.in.ICSReader
      • loci.formats.in.IM3Reader
      • loci.formats.in.ImagicReader
      • loci.formats.in.ImarisReader
      • loci.formats.in.IMODReader
      • loci.formats.in.ImspectorReader
      • loci.formats.in.InCell3000Reader
      • loci.formats.in.InCellReader
      • loci.formats.in.INRReader
      • loci.formats.in.InveonReader
      • loci.formats.in.IPLabReader
      • loci.formats.in.IPWReader
      • loci.formats.in.IvisionReader
      • loci.formats.in.JEOLReader
      • loci.formats.in.JPEG2000Reader
      • loci.formats.in.JPXReader
      • loci.formats.in.KhorosReader
      • loci.formats.in.KLBReader
      • loci.formats.in.KodakReader
      • loci.formats.in.L2DReader
      • loci.formats.in.LegacyND2Reader
      • loci.formats.in.LeicaReader
      • loci.formats.in.LiFlimReader
      • loci.formats.in.LIFReader
      • loci.formats.in.LIMReader
      • loci.formats.in.MIASReader
      • loci.formats.in.MicroCTReader
      • loci.formats.in.MicromanagerReader
      • loci.formats.in.MINCReader
      • loci.formats.in.MolecularImagingReader
      • loci.formats.in.MRCReader
      • loci.formats.in.MRWReader
      • loci.formats.in.NAFReader
      • loci.formats.in.NativeQTReader
      • loci.formats.in.NDPISReader
      • loci.formats.in.NiftiReader
      • loci.formats.in.NRRDReader
      • loci.formats.in.OBFReader
      • loci.formats.in.OIRReader
      • loci.formats.in.OMEXMLReader
      • loci.formats.in.OpenlabRawReader
      • loci.formats.in.OpenlabReader
      • loci.formats.in.OperettaReader
      • loci.formats.in.OxfordInstrumentsReader
      • loci.formats.in.PCIReader
      • loci.formats.in.PCORAWReader
      • loci.formats.in.PCXReader
      • loci.formats.in.PDSReader
      • loci.formats.in.PerkinElmerReader
      • loci.formats.in.PGMReader
      • loci.formats.in.PictReader
      • loci.formats.in.PovrayReader
      • loci.formats.in.PQBinReader
      • loci.formats.in.PrairieReader
      • loci.formats.in.PSDReader
      • loci.formats.in.QuesantReader
      • loci.formats.in.RHKReader
      • loci.formats.in.SBIGReader
      • loci.formats.in.ScanrReader
      • loci.formats.in.SDTReader
      • loci.formats.in.SeikoReader
      • loci.formats.in.SIFReader
      • loci.formats.in.SlidebookReader
      • loci.formats.in.SMCameraReader
      • loci.formats.in.SPCReader
      • loci.formats.in.SPEReader
      • loci.formats.in.SpiderReader
      • loci.formats.SubResolutionFormatReader
        • loci.formats.in.ImarisHDFReader
        • loci.formats.in.MinimalTiffReader
          • loci.formats.in.BaseTiffReader
            • loci.formats.in.DNGReader
            • loci.formats.in.FEITiffReader
            • loci.formats.in.FluoviewReader
            • loci.formats.in.GelReader
            • loci.formats.in.ImaconReader
            • loci.formats.in.ImarisTiffReader
            • loci.formats.in.ImprovisionTiffReader
            • loci.formats.in.IonpathMIBITiffReader
            • loci.formats.in.JPKReader
            • loci.formats.in.LeicaSCNReader
            • loci.formats.in.LEOReader
            • loci.formats.in.MetamorphReader
            • loci.formats.in.MetamorphTiffReader
            • loci.formats.in.NDPIReader
            • loci.formats.in.NikonElementsTiffReader
            • loci.formats.in.NikonReader
            • loci.formats.in.NikonTiffReader
            • loci.formats.in.PhotoshopTiffReader
            • loci.formats.in.PyramidTiffReader
            • loci.formats.in.SEQReader
            • loci.formats.in.SimplePCITiffReader
            • loci.formats.in.SISReader
            • loci.formats.in.SlidebookTiffReader
            • loci.formats.in.SVSReader
              • loci.formats.in.MikroscanTiffReader
            • loci.formats.in.TiffReader
            • loci.formats.in.TrestleReader
            • loci.formats.in.VectraReader
            • loci.formats.in.VentanaReader
        • loci.formats.in.NativeND2Reader
        • loci.formats.in.OMETiffReader
      • loci.formats.in.TargaReader
      • loci.formats.in.TCSReader
      • loci.formats.in.TextReader
      • loci.formats.in.TileJPEGReader
      • loci.formats.in.TillVisionReader
      • loci.formats.in.TopometrixReader
      • loci.formats.in.UBMReader
      • loci.formats.in.UnisokuReader
      • loci.formats.in.VarianFDFReader
      • loci.formats.in.VeecoReader
      • loci.formats.in.VGSAMReader
      • loci.formats.in.VisitechReader
      • loci.formats.in.VolocityClippingReader
      • loci.formats.in.VolocityReader
      • loci.formats.in.WATOPReader
      • loci.formats.in.WlzReader
      • loci.formats.WrappedReader
        • loci.formats.in.FilePatternReader
      • loci.formats.in.ZeissCZIReader
      • loci.formats.in.ZeissLMSReader
      • loci.formats.in.ZeissLSMReader
      • loci.formats.in.ZipReader
    • loci.formats.FormatWriter (implements loci.formats.IFormatWriter)
      • loci.formats.out.APNGWriter
      • loci.formats.out.AVIWriter
      • loci.formats.out.CellH5Writer
      • loci.formats.out.EPSWriter
      • loci.formats.out.ICSWriter
      • loci.formats.out.ImageIOWriter
        • loci.formats.out.JPEGWriter
      • loci.formats.out.JavaWriter
      • loci.formats.out.JPEG2000Writer
      • loci.formats.out.LegacyQTWriter
      • loci.formats.out.OMEXMLWriter
      • loci.formats.out.QTWriter
      • loci.formats.out.TiffWriter
        • loci.formats.out.OMETiffWriter
          • loci.formats.out.PyramidOMETiffWriter
      • loci.formats.out.V3DrawWriter
      • loci.formats.out.WlzWriter
  • loci.formats.FormatTools
  • loci.formats.in.FV1000Reader.ChannelData
  • loci.formats.in.FV1000Reader.PlaneData
  • loci.formats.in.GatanReader.ROIShape
  • loci.formats.gui.GUITools
  • loci.formats.in.IM3Reader.IM3Record
    • loci.formats.in.IM3Reader.BooleanIM3Record
    • loci.formats.in.IM3Reader.ContainerRecord
    • loci.formats.in.IM3Reader.FloatIM3Record
    • loci.formats.in.IM3Reader.IntIM3Record
    • loci.formats.in.IM3Reader.StringIM3Record
  • loci.formats.in.IM3Reader.Spectrum
  • ij.ImagePlus (implements java.lang.Cloneable, java.awt.image.ImageObserver, ij.measure.Measurements)
    • loci.plugins.util.VirtualImagePlus
  • loci.plugins.in.ImagePlusReader (implements loci.common.StatusReporter)
  • ij.process.ImageProcessor (implements java.lang.Cloneable)
    • loci.plugins.util.RecordedImageProcessor
  • loci.plugins.util.ImageProcessorSource (implements loci.formats.cache.ICacheSource)
  • loci.formats.ImageReader (implements loci.formats.IFormatReader)
  • ij.ImageStack
    • ij.VirtualStack
      • loci.plugins.util.BFVirtualStack
  • loci.formats.ImageTools
  • loci.formats.ImageWriter (implements loci.formats.IFormatWriter)
  • loci.plugins.in.Importer
  • loci.plugins.in.ImporterPrompter (implements loci.common.StatusListener)
  • loci.plugins.in.ImportProcess (implements loci.common.StatusReporter)
  • loci.formats.in.InCellReader.Image
  • java.io.InputStream (implements java.io.Closeable)
    • loci.formats.in.APNGReader.PNGInputStream
  • loci.formats.in.JPEG2000MetadataParser
  • loci.formats.codec.JPEGTileDecoder (implements java.lang.AutoCloseable)
  • loci.formats.services.JPEGTurboServiceImpl (implements loci.formats.services.JPEGTurboService)
  • loci.formats.gui.LegacyQTTools
  • loci.formats.in.LeicaHandler.Channel
  • loci.formats.in.LeicaHandler.Detector
  • loci.formats.in.LeicaHandler.Laser
  • loci.formats.in.LeicaHandler.MultiBand
  • loci.formats.in.LeicaHandler.ROI
  • loci.formats.in.LeicaReader.Detector
  • loci.formats.in.LeicaSCNReader.Dimension
  • loci.formats.in.LeicaSCNReader.Image
  • loci.formats.in.LeicaSCNReader.ImageCollection
  • loci.formats.in.LeicaSCNReader.Pixels
  • loci.plugins.util.LibraryChecker
  • loci.plugins.config.LibraryEntry (implements java.lang.Comparable<T>)
  • loci.formats.in.LiFlimReader.ROI
  • loci.formats.in.LIFReader.ROI
  • loci.plugins.config.LIFWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • loci.plugins.config.LociConfig (implements ij.plugin.PlugIn)
  • loci.plugins.LociExporter (implements ij.plugin.filter.PlugInFilter)
  • loci.plugins.LociImporter (implements ij.plugin.PlugIn)
  • loci.plugins.config.LociInstaller (implements ij.plugin.PlugIn)
  • loci.plugins.util.LociPrefs
  • loci.plugins.util.LuraWave
  • loci.plugins.macro.MacroFunctions (implements ij.macro.MacroExtension, ij.plugin.PlugIn)
    • loci.plugins.macro.LociFunctions
  • loci.formats.tools.MakeTestOmeTiff
  • loci.formats.tools.MakeTestOmeTiff.TextLine
  • loci.formats.Memoizer.KryoDeser (implements loci.formats.Memoizer.Deser)
  • loci.formats.Memoizer.RandomAccessDeser (implements loci.formats.Memoizer.Deser)
  • loci.formats.meta.MetadataConverter
  • loci.formats.MetadataList<T>
    • loci.formats.CoreMetadataList
  • loci.formats.MetadataTools
  • loci.formats.services.MetakitServiceImpl (implements loci.formats.services.MetakitService)
  • loci.formats.in.MetamorphTiffReader.NumericComparator (implements java.util.Comparator<T>)
  • loci.formats.in.MetamorphTiffReader.Well
  • loci.formats.in.MIASReader.AnalysisFile
  • loci.formats.in.MicromanagerReader.Index
  • loci.formats.in.MicromanagerReader.Position
  • loci.formats.in.MNGReader.SeriesInfo
  • loci.formats.Modulo
  • loci.formats.in.NativeND2Reader.ChunkMapEntry
  • loci.plugins.config.ND2Widgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • java.lang.Number (implements java.io.Serializable)
    • loci.formats.tiff.TiffRational (implements java.lang.Comparable<T>)
  • loci.formats.NumberFilter (implements java.io.FileFilter)
  • loci.formats.in.OBFReader.Stack
  • loci.formats.in.OBFReader.State
  • loci.formats.in.OIRReader.Channel
  • loci.formats.in.OIRReader.Detector
  • loci.formats.in.OIRReader.Laser
  • loci.formats.in.OIRReader.Objective
  • loci.formats.in.OIRReader.PixelBlock
  • loci.formats.ome.OMEPyramidStore.Resolution
  • loci.formats.in.OMETiffReader.OMETiffPlane
  • loci.formats.in.OMEXMLReader.BinData
  • loci.formats.tiff.OnDemandLongArray
  • loci.formats.in.OpenlabReader.PlaneInfo
  • loci.formats.in.OperettaReader.Plane
  • loci.plugins.prefs.Option
    • loci.plugins.prefs.BooleanOption
    • loci.plugins.prefs.DoubleOption
    • loci.plugins.prefs.StringOption
  • loci.plugins.prefs.OptionsDialog
    • loci.plugins.in.ImporterDialog
      • loci.plugins.in.ColorDialog
      • loci.plugins.in.CropDialog
      • loci.plugins.in.FilePatternDialog
      • loci.plugins.in.IdDialog
      • loci.plugins.in.LocationDialog
      • loci.plugins.in.MainDialog (implements java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.MouseListener)
      • loci.plugins.in.MemoryDialog
      • loci.plugins.in.RangeDialog
      • loci.plugins.in.SeriesDialog (implements java.awt.event.ActionListener)
      • loci.plugins.in.SwapDialog (implements java.awt.event.ItemListener)
      • loci.plugins.in.UpgradeDialog
  • loci.plugins.prefs.OptionsList
    • loci.plugins.in.ImporterOptions
  • loci.formats.in.PerkinElmerReader.PixelsFile
  • loci.plugins.config.PictWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • loci.formats.in.PrairieMetadata
  • loci.formats.in.PrairieMetadata.Frame
  • loci.formats.in.PrairieMetadata.PFile
  • loci.formats.in.PrairieMetadata.Sequence
  • loci.formats.in.PrairieMetadata.ValueItem (implements loci.formats.in.PrairieMetadata.Value)
  • loci.plugins.config.QTWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • loci.formats.ReaderWrapper (implements loci.formats.IFormatReader)
    • loci.formats.gui.BufferedImageReader
    • loci.formats.ChannelFiller
    • loci.formats.ChannelMerger
    • loci.formats.ChannelSeparator
    • loci.formats.DimensionSwapper
    • loci.formats.FileStitcher
    • loci.plugins.util.ImageProcessorReader
    • loci.formats.Memoizer
    • loci.formats.MinMaxCalculator
    • loci.formats.TileStitcher
    • loci.plugins.util.VirtualReader
  • loci.plugins.util.RecordedImageProcessor.MethodEntry
  • java.awt.geom.RectangularShape (implements java.lang.Cloneable, java.awt.Shape)
    • java.awt.geom.Rectangle2D
      • java.awt.Rectangle (implements java.io.Serializable, java.awt.Shape)
        • org.libjpegturbo.turbojpeg.TJTransform
  • loci.formats.Resolution
  • loci.formats.ResourceNamer
  • loci.plugins.util.ROIHandler
  • loci.formats.in.SDTInfo
  • loci.plugins.config.SDTWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • loci.plugins.Slicer (implements ij.plugin.filter.PlugInFilter)
  • loci.formats.in.SPEReader.SpeHeader
  • loci.formats.in.SPEReader.SpeROI
  • loci.plugins.config.SpringUtilities
  • java.lang.Thread (implements java.lang.Runnable)
    • loci.formats.cache.CacheUpdater
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • loci.formats.FormatException
        • loci.formats.cache.CacheException
        • loci.formats.MissingLibraryException
        • loci.formats.UnknownFormatException
        • loci.formats.UnsupportedCompressionException
      • java.lang.RuntimeException
        • java.lang.IllegalArgumentException
          • loci.formats.IllegalBlockException
  • loci.plugins.in.ThumbLoader (implements java.lang.Runnable)
  • loci.plugins.in.ThumbLoader.SeriesInfo (implements java.lang.Comparable<T>)
  • loci.formats.tiff.TiffConstants
  • loci.plugins.config.TiffDelegateWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • loci.formats.tiff.TiffIFDEntry (implements java.lang.Comparable<T>)
  • loci.formats.tiff.TiffParser (implements java.io.Closeable)
  • loci.formats.tiff.TiffSaver (implements java.io.Closeable)
  • loci.formats.TileStitcher.TileCoordinate
  • org.libjpegturbo.turbojpeg.TJ
  • org.libjpegturbo.turbojpeg.TJCompressor
  • org.libjpegturbo.turbojpeg.TJDecompressor
    • org.libjpegturbo.turbojpeg.TJTransformer
  • org.libjpegturbo.turbojpeg.TJLoader
  • org.libjpegturbo.turbojpeg.TJScalingFactor
  • javax.swing.TransferHandler (implements java.io.Serializable)
    • loci.plugins.shortcut.ShortcutTransferHandler
  • loci.plugins.Updater (implements ij.plugin.PlugIn)
  • loci.formats.tools.UpgradeCheck
  • loci.formats.UpgradeChecker
  • loci.formats.in.VentanaReader.AreaOfInterest
  • loci.formats.in.VentanaReader.Overlap (implements java.lang.Comparable<T>)
  • loci.formats.in.VentanaReader.TIFFTile
  • loci.formats.in.VolocityReader.Stack
  • loci.plugins.util.WindowTools
  • java.io.Writer (implements java.lang.Appendable, java.io.Closeable, java.io.Flushable)
    • loci.plugins.config.TextAreaWriter
  • loci.formats.WriterWrapper (implements loci.formats.IFormatWriter)
    • loci.formats.gui.BufferedImageWriter
  • loci.formats.gui.XMLCellRenderer.XMLItem
  • loci.formats.in.ZeissCZIReader.AttachmentEntry
  • loci.formats.in.ZeissCZIReader.Channel
  • loci.formats.in.ZeissCZIReader.Coordinate
  • loci.formats.in.ZeissCZIReader.DimensionEntry
  • loci.formats.in.ZeissCZIReader.DirectoryEntry
  • loci.formats.in.ZeissCZIReader.Segment
    • loci.formats.in.ZeissCZIReader.Attachment
    • loci.formats.in.ZeissCZIReader.AttachmentDirectory
    • loci.formats.in.ZeissCZIReader.Directory
    • loci.formats.in.ZeissCZIReader.FileHeader
    • loci.formats.in.ZeissCZIReader.Metadata
    • loci.formats.in.ZeissCZIReader.SubBlock
  • loci.plugins.config.ZeissCZIWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • loci.formats.in.ZeissLSMReader.SubBlock
    • loci.formats.in.ZeissLSMReader.BeamSplitter
    • loci.formats.in.ZeissLSMReader.DataChannel
    • loci.formats.in.ZeissLSMReader.DetectionChannel
    • loci.formats.in.ZeissLSMReader.IlluminationChannel
    • loci.formats.in.ZeissLSMReader.Laser
    • loci.formats.in.ZeissLSMReader.Marker
    • loci.formats.in.ZeissLSMReader.Recording
    • loci.formats.in.ZeissLSMReader.Timer
    • loci.formats.in.ZeissLSMReader.Track
  • loci.formats.in.ZeissTIFFHandler.Plane
  • loci.formats.in.ZeissTIFFHandler.Scaling
  • loci.formats.in.ZeissTIFFHandler.Scaling.Dimension
  • loci.formats.in.ZeissTIFFHandler.Tag
  • loci.formats.in.ZeissTIFFHandler.TagSet
  • loci.formats.in.ZeissTIFFReader.Plane
  • loci.formats.in.ZeissTIFFReader.TIFFInfo

Interface Hierarchy

• loci.formats.in.AmiraReader.PlaneReader
• java.lang.AutoCloseable
  • java.io.Closeable
    • loci.formats.IFormatHandler (also extends loci.formats.IMetadataConfigurable)
      • loci.formats.IFormatReader (also extends loci.formats.IPyramidHandler)
      • loci.formats.IFormatWriter (also extends loci.formats.IPyramidHandler)
    • loci.formats.IFormatReader (also extends loci.formats.IFormatHandler, loci.formats.IPyramidHandler)
    • loci.formats.IFormatWriter (also extends loci.formats.IFormatHandler, loci.formats.IPyramidHandler)
  • loci.formats.IFormatHandler (also extends java.io.Closeable, loci.formats.IMetadataConfigurable)
    • loci.formats.IFormatReader (also extends loci.formats.IPyramidHandler)
    • loci.formats.IFormatWriter (also extends loci.formats.IPyramidHandler)
  • loci.formats.IFormatReader (also extends loci.formats.IFormatHandler, loci.formats.IPyramidHandler)
  • loci.formats.IFormatWriter (also extends loci.formats.IFormatHandler, loci.formats.IPyramidHandler)
• ome.xml.meta.BaseMetadata
  • loci.formats.meta.BaseMetadata
  • ome.xml.meta.IMetadata (also extends ome.xml.meta.MetadataRetrieve, ome.xml.meta.MetadataStore)
    • loci.formats.meta.IMetadata (also extends loci.formats.meta.MetadataRetrieve, loci.formats.meta.MetadataStore)
      • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
    • ome.xml.meta.OMEXMLMetadata
      • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata)
    • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
  • loci.formats.meta.IMetadata (also extends ome.xml.meta.IMetadata, loci.formats.meta.MetadataRetrieve, loci.formats.meta.MetadataStore)
    • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
  • ome.xml.meta.MetadataRetrieve
    • ome.xml.meta.IMetadata (also extends ome.xml.meta.MetadataStore)
      • loci.formats.meta.IMetadata (also extends loci.formats.meta.MetadataRetrieve, loci.formats.meta.MetadataStore)
        • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
      • ome.xml.meta.OMEXMLMetadata
        • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata)
      • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
    • loci.formats.meta.IMetadata (also extends ome.xml.meta.IMetadata, loci.formats.meta.MetadataRetrieve, loci.formats.meta.MetadataStore)
      • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
    • loci.formats.meta.MetadataRetrieve
      • loci.formats.meta.IMetadata (also extends ome.xml.meta.IMetadata, loci.formats.meta.MetadataStore)
        • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
      • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
    • ome.xml.meta.OMEXMLMetadata
      • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata)
    • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
  • loci.formats.meta.MetadataRetrieve
    • loci.formats.meta.IMetadata (also extends ome.xml.meta.IMetadata, loci.formats.meta.MetadataStore)
      • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
    • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
  • ome.xml.meta.MetadataStore
    • ome.xml.meta.IMetadata (also extends ome.xml.meta.MetadataRetrieve)
      • loci.formats.meta.IMetadata (also extends loci.formats.meta.MetadataRetrieve, loci.formats.meta.MetadataStore)
        • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
      • ome.xml.meta.OMEXMLMetadata
        • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata)
      • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
    • loci.formats.meta.IMetadata (also extends ome.xml.meta.IMetadata, loci.formats.meta.MetadataRetrieve, loci.formats.meta.MetadataStore)
      • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
    • loci.formats.meta.MetadataStore
      • loci.formats.meta.IMetadata (also extends ome.xml.meta.IMetadata, loci.formats.meta.MetadataRetrieve)
        • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
      • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
    • ome.xml.meta.OMEXMLMetadata
      • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata)
    • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
  • loci.formats.meta.MetadataStore
    • loci.formats.meta.IMetadata (also extends ome.xml.meta.IMetadata, loci.formats.meta.MetadataRetrieve)
      • loci.formats.ome.OMEXMLMetadata (also extends ome.xml.meta.OMEXMLMetadata)
    • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
  • ome.xml.meta.OMEXMLMetadata
    • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata)
  • loci.formats.ome.OMEXMLMetadata (also extends loci.formats.meta.IMetadata, ome.xml.meta.OMEXMLMetadata)
• loci.formats.cache.CacheListener
• loci.formats.cache.CacheReporter
  • loci.formats.cache.ICacheStrategy
• loci.formats.codec.Codec
• loci.formats.cache.ICacheSource
• loci.plugins.config.IFormatWidgets
• loci.formats.IMetadataConfigurable
  • loci.formats.IFormatHandler (also extends java.io.Closeable)
    • loci.formats.IFormatReader (also extends loci.formats.IPyramidHandler)
    • loci.formats.IFormatWriter (also extends loci.formats.IPyramidHandler)
  • loci.formats.IFormatReader (also extends loci.formats.IFormatHandler, loci.formats.IPyramidHandler)
  • loci.formats.IFormatWriter (also extends loci.formats.IFormatHandler, loci.formats.IPyramidHandler)
• loci.formats.meta.IMinMaxStore
• loci.formats.IPyramidHandler
  • loci.formats.IFormatReader (also extends loci.formats.IFormatHandler)
  • loci.formats.IFormatWriter (also extends loci.formats.IFormatHandler)
• loci.formats.meta.IPyramidStore
• loci.formats.Memoizer.Deser
• loci.formats.in.MetadataOptions
• loci.formats.in.PrairieMetadata.Value
• loci.common.services.Service
  • loci.formats.services.EXIFService
  • loci.formats.services.JAIIIOService
  • loci.formats.services.JHDFService
  • loci.formats.services.JPEGTurboService
  • loci.formats.services.JPEGXRService
  • loci.formats.services.LuraWaveService
  • loci.formats.services.MDBService
  • loci.formats.services.MetakitService
  • loci.formats.services.NetCDFService
  • loci.formats.services.OMEXMLService
  • loci.formats.services.POIService
  • loci.formats.services.WlzService
• org.libjpegturbo.turbojpeg.TJCustomFilter

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • loci.formats.codec.JPEG2000SegmentMarker (implements loci.common.enumeration.CodedEnum)
    • loci.formats.codec.JPEG2000BoxType (implements loci.common.enumeration.CodedEnum)
    • loci.formats.codec.CompressionType (implements loci.common.enumeration.CodedEnum)
    • loci.formats.in.SPEReader.SpeHeaderType
    • loci.formats.in.SPEReader.SpeHeaderEntry
    • loci.formats.in.BaseZeissReader.Context
    • loci.formats.in.BaseZeissReader.FeatureType
    • loci.formats.in.BaseZeissReader.DrawStyle
    • loci.formats.in.BaseZeissReader.FillStyle
    • loci.formats.in.BaseZeissReader.LineEndStyle
    • loci.formats.in.BaseZeissReader.PointStyle
    • loci.formats.in.BaseZeissReader.LineEndPositions
    • loci.formats.in.BaseZeissReader.TextAlignment
    • loci.formats.in.BaseZeissReader.Charset
    • loci.formats.in.MetadataLevel
    • loci.formats.tiff.TiffCompression (implements loci.common.enumeration.CodedEnum)
    • loci.formats.tiff.PhotoInterp (implements loci.common.enumeration.CodedEnum)
    • loci.formats.tiff.IFDType (implements loci.common.enumeration.CodedEnum)
    • loci.plugins.in.ImportStep
    • loci.plugins.util.LibraryChecker.Library