public class ICSWriter extends FormatWriter
Modifier and Type | Field and Description |
---|---|
private int |
dimensionLength |
private long |
dimensionOffset |
private int |
lastPlane |
private java.lang.String |
outputOrder |
private long |
pixelOffset |
private loci.common.RandomAccessOutputStream |
pixels |
private java.util.List<java.lang.String> |
uniqueFiles |
cm, compression, compressionTypes, fps, initialized, interleaved, metadataRetrieve, options, out, resolution, resolutionData, sequential, series, validBits
COMPRESSION_SUFFIXES, currentId, format, LOGGER, metadataOptions, suffixes
Constructor and Description |
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ICSWriter() |
Modifier and Type | Method and Description |
---|---|
boolean |
canDoStacks()
Reports whether the writer can save multiple images to a single file.
|
void |
close() |
int[] |
getPixelTypes(java.lang.String codec)
Gets the supported pixel types for the given codec.
|
private int[] |
overwriteDimensions(MetadataRetrieve meta) |
void |
saveBytes(int no,
byte[] buf,
int x,
int y,
int w,
int h)
Saves the given image tile to the current series in the current file.
|
void |
setId(java.lang.String id)
Initializes a writer from the input file name.
|
void |
setOutputOrder(java.lang.String outputOrder)
Set the order in which dimensions should be written to the file.
|
changeOutputFile, checkParams, createOutputStream, getColorModel, getCompression, getCompressionTypes, getFramesPerSecond, getMetadataRetrieve, getPixelTypes, getPlaneCount, getPlaneCount, getResolution, getResolutionCount, getResolutions, getSamplesPerPixel, getSamplesPerPixel, getSeries, getSizeX, getSizeY, getTileSizeX, getTileSizeY, hasResolutions, isFullPlane, isInterleaved, isSupportedType, saveBytes, saveBytes, savePlane, savePlane, savePlane, seekToPlaneOffset, setCodecOptions, setColorModel, setCompression, setFramesPerSecond, setInterleaved, setMetadataRetrieve, setResolution, setResolutions, setSeries, setTileSizeX, setTileSizeY, setValidBitsPerPixel, setWriteSequentially
checkSuffix, checkSuffix, getFormat, getMetadataOptions, getNativeDataType, getSuffixes, getSupportedMetadataLevels, isThisType, setMetadataOptions
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getFormat, getNativeDataType, getSuffixes, isThisType
getMetadataOptions, getSupportedMetadataLevels, setMetadataOptions
private long dimensionOffset
private int dimensionLength
private long pixelOffset
private int lastPlane
private loci.common.RandomAccessOutputStream pixels
private java.util.List<java.lang.String> uniqueFiles
private java.lang.String outputOrder
public void setOutputOrder(java.lang.String outputOrder)
IFormatReader.getDimensionOrder()
By default, the ordering is "XYZTC".public void saveBytes(int no, byte[] buf, int x, int y, int w, int h) throws FormatException, java.io.IOException
IFormatWriter
no
- the image index within the current file, starting from 0.buf
- the byte array that represents the image tile.x
- the X coordinate of the upper-left corner of the image tile.y
- the Y coordinate of the upper-left corner of the image tile.w
- the width (in pixels) of the image tile.h
- the height (in pixels) of the image tile.FormatException
- if one of the parameters is invalid.java.io.IOException
- if there was a problem writing to the file.IFormatWriter.saveBytes(int, byte[], int, int, int, int)
public boolean canDoStacks()
IFormatWriter
canDoStacks
in interface IFormatWriter
canDoStacks
in class FormatWriter
public int[] getPixelTypes(java.lang.String codec)
IFormatWriter
getPixelTypes
in interface IFormatWriter
getPixelTypes
in class FormatWriter
public void setId(java.lang.String id) throws FormatException, java.io.IOException
FormatWriter
RandomAccessOutputStream
for the output
file and initializes the metadata for all the series using
FormatWriter.setSeries(int)
.setId
in interface IFormatHandler
setId
in class FormatWriter
id
- a String
specifying the path to the fileFormatException
java.io.IOException
public void close() throws java.io.IOException
close
in interface java.io.Closeable
close
in interface java.lang.AutoCloseable
close
in class FormatWriter
java.io.IOException
private int[] overwriteDimensions(MetadataRetrieve meta) throws java.io.IOException
java.io.IOException
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