| Package | Description |
|---|---|
| loci.formats |
Bio-Formats: a library for reading and writing popular microscopy file
formats.
|
| loci.formats.in |
Package containing Bio-Formats file format readers.
|
| Class and Description |
|---|
| MetadataLevel |
| MetadataOptions
Holds metadata-related options.
|
| Class and Description |
|---|
| AmiraReader.PlaneReader
This is the common interface for all formats, compressed or not.
|
| APNGReader.PNGBlock |
| APNGReader.PNGInputStream
InputStream implementation that stitches together IDAT blocks into
a seamless zlib stream.
|
| BaseTiffReader
BaseTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
|
| BaseZeissReader
BaseZeissReader contains common functionality required by
readers for Zeiss AxioVision formats.
|
| BaseZeissReader.Charset |
| BaseZeissReader.Context |
| BaseZeissReader.DrawStyle
Line drawing styles.
|
| BaseZeissReader.FeatureType
Feature types.
|
| BaseZeissReader.FillStyle
Fill styles.
|
| BaseZeissReader.Layer
Layer class representing an AxioVision layer; used to contain a
collection of shapes.
|
| BaseZeissReader.LineEndPositions |
| BaseZeissReader.LineEndStyle
Line ending styles.
|
| BaseZeissReader.PointStyle
Point styles.
|
| BaseZeissReader.Shape
Shape class representing the metadata within an AxioVision Shape ROI
|
| BaseZeissReader.Tag
Content of a single tag from a Tags block.
|
| BaseZeissReader.TextAlignment |
| BDVReader.H5Coordinate |
| BIFormatReader
BIFormatReader is the superclass for file format readers
that use java.awt.image.BufferedImage as the native data type.
|
| BioRadReader.Note |
| BMPReader
BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
|
| CellH5Reader.CellH5Coordinate |
| CellomicsReader.ChannelFile |
| CellSensReader.Pyramid |
| CellSensReader.TileCoordinate |
| CellVoyagerReader.AreaInfo |
| CellVoyagerReader.ChannelInfo |
| CellVoyagerReader.FieldInfo |
| CellVoyagerReader.WellInfo |
| ColumbusReader.Plane |
| CV7000Reader.Channel |
| CV7000Reader.LightSource |
| CV7000Reader.Plane |
| DeltavisionReader
DeltavisionReader is the file format reader for Deltavision files.
|
| DeltavisionReader.DVExtHdrFields
This private class structure holds the details for the extended header.
|
| DicomReader
DicomReader is the file format reader for DICOM files.
|
| FlexReader.FilterGroup
Stores a grouping of filters.
|
| FlexReader.FlexFile |
| FV1000Reader.ChannelData |
| FV1000Reader.PlaneData |
| GatanReader.ROIShape |
| IM3Reader.ContainerRecord |
| IM3Reader.IM3Record |
| IM3Reader.Spectrum |
| ImageIOReader
ImageIOReader is the superclass for file format readers
that use the javax.imageio package.
|
| InCellReader.Image |
| LeicaHandler.Channel |
| LeicaHandler.Detector |
| LeicaHandler.Laser |
| LeicaHandler.MultiBand |
| LeicaHandler.ROI |
| LeicaReader.Detector |
| LeicaSCNReader.Dimension |
| LeicaSCNReader.Image |
| LeicaSCNReader.ImageCollection |
| LeicaSCNReader.LeicaSCNHandler
SAX handler for parsing XML in Leica SCN files.
|
| LeicaSCNReader.Pixels |
| LiFlimReader.ROI |
| LIFReader.ROI |
| MetadataLevel |
| MetadataOptions
Holds metadata-related options.
|
| MetamorphHandler
MetamorphTiffReader is the file format reader for TIFF files produced by
Metamorph software version 7.5 and above.
|
| MetamorphReader
Reader is the file format reader for Metamorph STK files.
|
| MetamorphTiffReader.Well |
| MIASReader.AnalysisFile |
| MicromanagerReader.Index |
| MicromanagerReader.Position |
| MinimalTiffReader
MinimalTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
|
| MNGReader.SeriesInfo |
| ND2Handler
DefaultHandler implementation for handling XML produced by Nikon Elements.
|
| OBFReader.Frame |
| OBFReader.Stack |
| OIRReader.Channel |
| OIRReader.Detector |
| OIRReader.Laser |
| OIRReader.Objective |
| OIRReader.PixelBlock |
| OMETiffReader.OMETiffCoreMetadata |
| OMETiffReader.OMETiffPlane
Structure containing details on where to find a particular image plane.
|
| OMEXMLReader.BinData |
| OpenlabReader.PlaneInfo
Helper class for storing plane info.
|
| OperettaReader.Plane |
| PerkinElmerReader.PixelsFile |
| PictReader
PictReader is the file format reader for Apple PICT files.
|
| PrairieMetadata
Metadata structure for Prairie Technologies' TIFF-based format.
|
| PrairieMetadata.Frame
A Prairie
<Frame>, beneath a <Sequence>. |
| PrairieMetadata.PFile
A Prairie
<File> beneath a <Frame>. |
| PrairieMetadata.Sequence
A Prairie
<Sequence>. |
| PrairieMetadata.Value
A value in a Prairie metadata dictionary.
|
| PrairieMetadata.ValueTable
A table of values.
|
| SDTInfo
SDTInfo encapsulates the header information for
Becker & Hickl SPC-Image SDT files.
|
| SPEReader.SpeHeader
SpeHeader holds a byte array containing the SPE binary data header along
with associated methods for reading SPE Header Entry values in various formats
|
| SPEReader.SpeHeaderEntry
SpeHeaderEntry is an Enum which provides a list of all available SPE header entries along
with the offset value from the top of the header in bytes and their associated data type
|
| SPEReader.SpeHeaderType
SpeHeaderType is an Enum representing the available data types stored in the SPE header
|
| SPEReader.SpeROI
Private class to represent the data for a single ROI in the SPE format
|
| SVSReader
SVSReader is the file format reader for Aperio SVS TIFF files.
|
| TiffReader
TiffReader is the file format reader for regular TIFF files,
not of any specific TIFF variant.
|
| VentanaReader.AreaOfInterest |
| VentanaReader.Overlap |
| VentanaReader.TIFFTile |
| VolocityReader.Stack |
| ZeissCZIReader.Attachment
Segment with ID "ZISRAWATTACH".
|
| ZeissCZIReader.AttachmentEntry |
| ZeissCZIReader.Channel |
| ZeissCZIReader.Coordinate |
| ZeissCZIReader.DimensionEntry |
| ZeissCZIReader.DirectoryEntry |
| ZeissCZIReader.Segment
Top-level class that implements logic common to all types of Segment.
|
| ZeissCZIReader.SubBlock
Segment with ID "ZISRAWSUBBLOCK".
|
| ZeissLSMReader.SubBlock |
| ZeissTIFFHandler
SAX handler for parsing XML in Zeiss TIFF files.
|
| ZeissTIFFHandler.Plane
Metadata for a single image plane.
|
| ZeissTIFFHandler.Scaling
Scaling metadata.
|
| ZeissTIFFHandler.Scaling.Dimension
Scaling information for a single dimension.
|
| ZeissTIFFHandler.TagSet
A collection of tags from a single Tags block.
|
| ZeissTIFFReader
ZeissTIFFReader is the file format reader for Zeiss AxioVision TIFF
files and their companion XML file.
|
| ZeissTIFFReader.Plane |
| ZeissTIFFReader.TIFFInfo |
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