Bio-Formats

Packages 
Package Description
com.luratech.lwf  
com.sun.media.imageio.plugins.bmp
Package containing the public classes used by the Sun BMP plug-in for the Image I/O Framework.
com.sun.media.imageio.plugins.jpeg2000
Package containing the public classes used by the Sun JPEG 2000 plug-in for the Image I/O Framework.
com.sun.media.imageio.plugins.pnm
Package containing the public classes used by the Sun PNM plug-in for the Image I/O Framework.
com.sun.media.imageio.plugins.tiff
Package containing the public classes used by the TIFF plug-in for the Image I/O Framework.
com.sun.media.imageio.stream
Provides ImageInputStream and ImageOutputStream classes for use with the Java Image I/O Framework.
com.sun.media.imageioimpl.common  
com.sun.media.imageioimpl.plugins.bmp  
com.sun.media.imageioimpl.plugins.clib  
com.sun.media.imageioimpl.plugins.gif  
com.sun.media.imageioimpl.plugins.jpeg  
com.sun.media.imageioimpl.plugins.jpeg2000  
com.sun.media.imageioimpl.plugins.pcx  
com.sun.media.imageioimpl.plugins.png  
com.sun.media.imageioimpl.plugins.pnm  
com.sun.media.imageioimpl.plugins.raw  
com.sun.media.imageioimpl.plugins.tiff  
com.sun.media.imageioimpl.plugins.wbmp  
com.sun.media.imageioimpl.stream  
com.sun.media.jai.imageioimpl  
com.sun.media.jai.operator
Provides JAI operations which read and write images using the Java Image I/O Framework.
jj2000.j2k  
jj2000.j2k.codestream  
jj2000.j2k.codestream.reader  
jj2000.j2k.codestream.writer  
jj2000.j2k.decoder  
jj2000.j2k.entropy  
jj2000.j2k.entropy.decoder  
jj2000.j2k.entropy.encoder  
jj2000.j2k.fileformat  
jj2000.j2k.fileformat.reader  
jj2000.j2k.fileformat.writer  
jj2000.j2k.image  
jj2000.j2k.image.forwcomptransf  
jj2000.j2k.image.input  
jj2000.j2k.image.invcomptransf  
jj2000.j2k.io  
jj2000.j2k.quantization  
jj2000.j2k.quantization.dequantizer  
jj2000.j2k.quantization.quantizer  
jj2000.j2k.roi  
jj2000.j2k.roi.encoder  
jj2000.j2k.util  
jj2000.j2k.wavelet  
jj2000.j2k.wavelet.analysis  
jj2000.j2k.wavelet.synthesis  
loci.common  
loci.common.enumeration  
loci.common.services  
loci.common.xml  
loci.formats
Bio-Formats: a library for reading and writing popular microscopy file formats.
loci.formats.cache
Package containing Bio-Formats caching logic, for managing subsets of large collections of image planes in memory.
loci.formats.codec
Package containing Bio-Formats compression and decompression logic.
loci.formats.gui
Package containing Bio-Formats graphical user interface code.
loci.formats.in
Package containing Bio-Formats file format readers.
loci.formats.meta
Package containing core Bio-Formats metadata interfaces for the OME data model.
loci.formats.ome
Package containing Bio-Formats OME-related logic for OME-XML metadata, and database import, upload and download.
loci.formats.out
Package containing Bio-Formats file format writers.
loci.formats.services  
loci.formats.tiff
Package containing Bio-Formats TIFF code of general utility.
loci.formats.tools
Package containing utility methods corresponding to the Bio-Formats command line tools.
loci.plugins
Bio-Formats Plugins: a collection of plugins for ImageJ, including the Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, Data Browser and Stack Slicer.
loci.plugins.config
Bio-Formats Plugins Configuration plugin for ImageJ.
loci.plugins.in
Bio-Formats Importer plugin for ImageJ.
loci.plugins.macro
Bio-Formats Macro Extensions plugin for ImageJ.
loci.plugins.out
Bio-Formats Exporter plugin for ImageJ.
loci.plugins.prefs
Classes for managing Bio-Formats plugins preferences.
loci.plugins.shortcut
Bio-Formats Plugins Shortcut Window plugin for ImageJ.
loci.plugins.util
Utility classes and methods for the Bio-Formats plugins for ImageJ.
loci.poi  
loci.poi.ddf
This package contains classes for decoding the Microsoft Office Drawing format otherwise known as escher henceforth known in POI as the Dreadful Drawing Format.
loci.poi.dev  
loci.poi.hpsf
loci.poi.hpsf.wellknown
Specific support for DocumentSummaryInformation, SummaryInformation types.
loci.poi.hssf.dev
DEV package serves two purposes.
loci.poi.hssf.eventmodel  
loci.poi.hssf.eventusermodel
HSSF eventmodel Package provides an event-based API for reading HSSF files.
loci.poi.hssf.extractor  
loci.poi.hssf.model
Provides low level API structures for reading, writing, modifying XLS files.
loci.poi.hssf.record
Record package contains class representations for XLS binary strutures.
loci.poi.hssf.record.aggregates
record aggregates are not real "records" but collections of records that act as a single record.
loci.poi.hssf.record.formula
formula package contains binary PTG structures used in Formulas
loci.poi.hssf.usermodel
usermodel package maps HSSF low level strutures to familiar workbook/sheet model
loci.poi.hssf.util
util package contains tools needed for writing HSSF files that are not necesarily "real" HSSF concepts.
loci.poi.poifs.common
common package contains constants and other classes shared across all POIFS subpackages
loci.poi.poifs.dev
DEV package serves two purposes.
loci.poi.poifs.eventfilesystem
The eventfilesystem is an efficient method for reading OLE 2 CDF files.
loci.poi.poifs.filesystem
filesystem package maps OLE 2 Compound document files to a more familiar filesystem interface.
loci.poi.poifs.property
property package contains high and low level Property structures for POIFS.
loci.poi.poifs.storage
storage package contains low level binary structures for POIFS's implementation of the OLE 2 Compound Document Format.
loci.poi.util
Top-level util package are classes that are useful throughout the project.
loci.tests
Base package for automated and manual testing of the Bio-Formats software packages.
loci.tests.testng
Package for automated testing of the Bio-Formats software packages using TestNG.
mdbtools  
mdbtools.dbengine  
mdbtools.dbengine.functions  
mdbtools.dbengine.sql  
mdbtools.dbengine.tasks  
mdbtools.examples  
mdbtools.jdbc2  
mdbtools.libmdb  
mdbtools.libmdb06util  
mdbtools.publicapi  
mdbtools.tests  
ome.jxr
OME JPEG XR: OME library for reading the JPEG XR file format.
ome.jxr.constants
Static values used in comparison operations during file and image metadata validation.
ome.jxr.ifd
Enums and classes used during metadata extraction from the IFD structure.
ome.jxr.image
Enums and classes used to model the image elements that are located in the codestream (e.g.
ome.jxr.parser
Class hierarchy implementing the chain of responsibility pattern and used during parsing of the file, IFD and image header.
ome.metakit  
ome.specification  
ome.units  
ome.units.quantity  
ome.units.unit  
ome.xml.meta  
ome.xml.model  
ome.xml.model.enums  
ome.xml.model.enums.handlers  
ome.xml.model.primitives  
org.libjpegturbo.turbojpeg  

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