Uses of Class
loci.formats.FormatHandler

Packages that use FormatHandler

Package	Description
loci.formats	Bio-Formats: a library for reading and writing popular microscopy file formats.
loci.formats.in	Package containing Bio-Formats file format readers.
loci.formats.out	Package containing Bio-Formats file format writers.
loci.ome.io	OME I/O: a library for OME database import, upload and download.

Uses of FormatHandler in loci.formats

Subclasses of FormatHandler in loci.formats

Modifier and Type	Class and Description
class	DelegateReader DelegateReader is a file format reader that selects which reader to use for a format if there are two readers which handle the same format.
class	FormatReader Abstract superclass of all biological file format readers.
class	FormatWriter Abstract superclass of all biological file format writers.

Uses of FormatHandler in loci.formats.in

Subclasses of FormatHandler in loci.formats.in

Modifier and Type	Class and Description
class	AFIReader AFIReader is the file format reader for Aperio AFI files.
class	AIMReader AIMReader is the file format reader for .aim files.
class	AliconaReader AliconaReader is the file format reader for Alicona AL3D files.
class	AmiraReader This is a file format reader for AmiraMesh data.
class	AnalyzeReader AnalyzeReader is the file format reader for Analyze 7.5 files.
class	APLReader APLReader is the file format reader for Olympus APL files.
class	APNGReader APNGReader is the file format reader for Animated Portable Network Graphics (APNG) images.
class	ARFReader ARFReader is the file format reader for Axon Raw Format (ARF) files, produced by INDEC BioSystems's Imaging Workbench software.
class	AVIReader AVIReader is the file format reader for AVI files.
class	BaseTiffReader BaseTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
class	BaseZeissReader BaseZeissReader contains common functionality required by readers for Zeiss AxioVision formats.
class	BDReader BDReader is the file format reader for BD Pathway datasets.
class	BIFormatReader BIFormatReader is the superclass for file format readers that use java.awt.image.BufferedImage as the native data type.
class	BioRadGelReader BioRadGelReader is the file format reader for Bio-Rad gel files.
class	BioRadReader BioRadReader is the file format reader for Bio-Rad PIC files.
class	BioRadSCNReader BioRadSCNReader is the reader for Bio-Rad .scn files Source code: Trac, Gitweb
class	BMPReader BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
class	BrukerReader BrukerReader is the file format reader for Bruker MRI files.
class	BurleighReader BurleighReader is the file format reader for Burleigh .img files.
class	CanonRawReader CanonRawReader is the file format reader for Canon RAW files.
class	CellomicsReader Reader for Cellomics C01 files.
class	CellSensReader CellSensReader is the file format reader for cellSens .vsi files.
class	CellVoyagerReader A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope ( http://www.yokogawa.com/scanner/products/cv1000e.htm).
class	CellWorxReader CellWorxReader is the file format reader for CellWorx .pnl files.
class	DeltavisionReader DeltavisionReader is the file format reader for Deltavision files.
class	DicomReader DicomReader is the file format reader for DICOM files.
class	DNGReader DNGReader is the file format reader for Canon DNG (TIFF) files.
class	Ecat7Reader Ecat7Reader is the file format reader for ECAT 7 files.
class	EPSReader Reader is the file format reader for Encapsulated PostScript (EPS) files.
class	FakeReader FakeReader is the file format reader for faking input data.
class	FEIReader FEIReader is the file format reader for FEI and Philips .img files.
class	FEITiffReader FEITiffReader is the file format reader for TIFF files produced by various FEI software.
class	FitsReader FitsReader is the file format reader for Flexible Image Transport System (FITS) images.
class	FlexReader FlexReader is a file format reader for Evotec Flex files.
class	FluoviewReader FluoviewReader is the file format reader for Olympus Fluoview TIFF files AND Andor Bio-imaging Division (ABD) TIFF files.
class	FujiReader FujiReader is the file format reader for Fuji LAS 3000 datasets.
class	FV1000Reader FV1000Reader is the file format reader for Fluoview FV 1000 OIB and Fluoview FV 1000 OIF files.
class	GatanDM2Reader GatanDM2Reader is the file format reader for Gatan .dm2 files.
class	GatanReader GatanReader is the file format reader for Gatan files.
class	GelReader GelReader is the file format reader for Molecular Dynamics GEL TIFF files.
class	GIFReader GIFReader is the file format reader for Graphics Interchange Format (GIF) files.
class	HamamatsuVMSReader HamamatsuVMSReader is the file format reader for Hamamatsu VMS datasets.
class	HISReader HISReader is the file format reader for Hamamatsu .his files.
class	HitachiReader HitachiReader is the file format reader for S-4800 files.
class	HRDGDFReader HRDGDFReader is the file format reader for the Gridded Data Format used by NOAA's Hurricane Research Division.
class	ICSReader ICSReader is the file format reader for ICS (Image Cytometry Standard) files.
class	ImaconReader ImaconReader is the file format reader for Imacon .fff (TIFF) files.
class	ImageIOReader ImageIOReader is the superclass for file format readers that use the javax.imageio package.
class	ImagicReader ImagicReader is the file format reader for IMAGIC files.
class	ImarisHDFReader Reader for Bitplane Imaris 5.5 (HDF) files.
class	ImarisReader ImarisReader is the file format reader for Bitplane Imaris files.
class	ImarisTiffReader ImarisTiffReader is the file format reader for Bitplane Imaris 3 files (TIFF variant).
class	IMODReader Reader for IMOD binary files.
class	ImprovisionTiffReader ImprovisionTiffReader is the file format reader for Improvision TIFF files.
class	ImspectorReader ImspectorReader is the file format reader for Imspector .msr files.
class	InCell3000Reader InCell3000Reader is the file format reader for InCell 3000.
class	InCellReader InCellReader is the file format reader for InCell 1000/2000 datasets.
class	INRReader INRReader is the file format reader for INR files.
class	InveonReader InveonReader is the file format reader for Inveon files.
class	IPLabReader IPLabReader is the file format reader for IPLab (.IPL) files.
class	IPWReader IPWReader is the file format reader for Image-Pro Workspace (IPW) files.
class	IvisionReader IvisionReader is the file format reader for IVision (.IPM) files.
class	JEOLReader JEOLReader is the file format reader for JEOL files.
class	JPEG2000Reader JPEG2000Reader is the file format reader for JPEG-2000 images.
class	JPEGReader JPEGReader is the file format reader for JPEG images.
class	JPKReader JPKReader is the file format reader for JPK Instruments files.
class	JPXReader JPXReader is the file format reader for JPX (3D JPEG-2000) images.
class	KhorosReader Reader for Khoros XV files.
class	KodakReader KodakReader is the file format reader for Kodak Molecular Imaging .bip files.
class	L2DReader L2DReader is the file format reader for Li-Cor L2D datasets.
class	LegacyND2Reader LegacyND2Reader is a file format reader for Nikon ND2 files that uses the Nikon ND2 SDK - it is only usable on Windows machines.
class	LegacyQTReader LegacyQTReader is a file format reader for QuickTime movie files.
class	LeicaReader LeicaReader is the file format reader for Leica files.
class	LeicaSCNReader LeicaSCNReader is the file format reader for Leica SCN TIFF files.
class	LEOReader LEOReader is the file format reader for LEO EM files.
class	LiFlimReader LiFlimReader is the file format reader for LI-FLIM files.
class	LIFReader LIFReader is the file format reader for Leica LIF files.
class	LIMReader LIMReader is the file format reader for Laboratory Imaging/Nikon LIM files.
class	MetamorphReader Reader is the file format reader for Metamorph STK files.
class	MetamorphTiffReader MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.
class	MIASReader MIASReader is the file format reader for Maia Scientific MIAS-2 datasets.
class	MicromanagerReader MicromanagerReader is the file format reader for Micro-Manager files.
class	MINCReader MINCReader is the file format reader for MINC MRI files.
class	MinimalTiffReader MinimalTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
class	MNGReader MNGReader is the file format reader for Multiple Network Graphics (MNG) files.
class	MolecularImagingReader MolecularImagingReader is the file format reader for Molecular Imaging files.
class	MRCReader MRCReader is the file format reader for MRC files.
class	MRWReader MRWReader is the file format reader for Minolta MRW files.
class	NAFReader NAFReader is the file format reader for Hamamatsu Aquacosmos NAF files.
class	NativeND2Reader NativeND2Reader is the file format reader for Nikon ND2 files.
class	NativeQTReader NativeQTReader is the file format reader for QuickTime movie files.
class	ND2Reader ND2Reader is the file format reader for Nikon ND2 files.
class	NDPIReader NDPIReader is the file format reader for Hamamatsu .ndpi files.
class	NDPISReader NDPISReader is the file format reader for Hamamatsu .ndpis files.
class	NiftiReader NiftiReader is the file format reader for NIfTI files.
class	NikonElementsTiffReader NikonElementsTiffReader is the file format reader for TIFF files produced by Nikon Elements.
class	NikonReader NikonReader is the file format reader for Nikon NEF (TIFF) files.
class	NikonTiffReader NikonTiffReader is the file format reader for Nikon TIFF files.
class	NRRDReader File format reader for NRRD files; see http://teem.sourceforge.net/nrrd.
class	OBFReader OBFReader is the file format reader for Imspector OBF files.
class	OMETiffReader OMETiffReader is the file format reader for OME-TIFF files.
class	OMEXMLReader OMEXMLReader is the file format reader for OME-XML files.
class	OpenlabRawReader OpenlabRawReader is the file format reader for Openlab RAW files.
class	OpenlabReader OpenlabReader is the file format reader for Openlab LIFF files.
class	OperettaReader OperettaReader is the file format reader for PerkinElmer Operetta data.
class	OxfordInstrumentsReader OxfordInstrumentsReader is the file format reader for Oxford Instruments .top files.
class	PCIReader PCIReader is the file format reader for SimplePCI (Compix) .cxd files.
class	PCORAWReader PCORAWReader is the file format reader for PCORAW files.
class	PCXReader PCXReader is the file format reader for PCX files (originally used by PC Paintbrush; now used in Zeiss' LSM Image Browser).
class	PDSReader PDSReader is the file format reader for Perkin Elmer densitometer files.
class	PerkinElmerReader PerkinElmerReader is the file format reader for PerkinElmer files.
class	PGMReader PGMReader is the file format reader for Portable Gray Map (PGM) images.
class	PhotoshopTiffReader PhotoshopTiffReader is the file format reader for Adobe Photoshop TIFF files.
class	PictReader PictReader is the file format reader for Apple PICT files.
class	PovrayReader PovrayReader is the file format reader for POV-Ray .df3 files.
class	PrairieReader PrairieReader is the file format reader for Prairie Technologies' TIFF variant.
class	PSDReader PSDReader is the file format reader for Photoshop PSD files.
class	PyramidTiffReader PyramidTiffReader is the file format reader for pyramid TIFFs.
class	QTReader QTReader is the file format reader for QuickTime movie files.
class	QuesantReader QuesantReader is the file format reader for Quesant .afm files.
class	RHKReader RHKReader is the file format reader for RHK Technologies files.
class	SBIGReader SBIGReader is the file format reader for SBIG files.
class	ScanrReader ScanrReader is the file format reader for Olympus ScanR datasets.
class	ScreenReader ScreenReader is a generic reader for files in non-HCS formats that have been organized into a screen.
class	SDTReader SDTReader is the file format reader for Becker & Hickl SPC-Image SDT files.
class	SeikoReader SeikoReader is the file format reader for Seiko .xqd/.xqf files.
class	SEQReader SEQReader is the file format reader for Image-Pro Sequence files.
class	SIFReader SIFReader is the file format reader for Andor SIF files.
class	SimplePCITiffReader SimplePCITiffReader is the file format reader for TIFF files produced by SimplePCI software.
class	SISReader SISReader is the file format reader for Olympus Soft Imaging Solutions TIFF files.
class	SlidebookReader SlidebookReader is the file format reader for 3I Slidebook files.
class	SlidebookTiffReader Source code: Trac, Gitweb
class	SMCameraReader SMCameraReader is the file format reader for SM camera files.
class	SpiderReader SpiderReader is the file format reader for SPIDER files.
class	SVSReader SVSReader is the file format reader for Aperio SVS TIFF files.
class	TargaReader File format reader for Truevision Targa files.
class	TCSReader TCSReader is the file format reader for Leica TCS TIFF files and their companion XML file.
class	TextReader Reader for text files containing tables of data.
class	TiffDelegateReader TiffDelegateReader is a file format reader for TIFF files.
class	TiffJAIReader TiffJAIReader is a file format reader for TIFF images.
class	TiffReader TiffReader is the file format reader for regular TIFF files, not of any specific TIFF variant.
class	TileJPEGReader Reader for decoding JPEG images using java.awt.Toolkit.
class	TillVisionReader TillVisionReader is the file format reader for TillVision files.
class	TopometrixReader TopometrixReader is the file format reader for TopoMetrix .tfr, .ffr, .zfr, .zfp, and .2fl files.
class	TrestleReader TrestleReader is the file format reader for Trestle slide datasets.
class	UBMReader UBMReader is the file format reader for UBM .pr3 files.
class	UnisokuReader UnisokuReader is the file format reader for Unisoku STM files.
class	VarianFDFReader VarianFDFReader is the file format reader for Varian FDF files.
class	VGSAMReader VGSAMReader is the file format reader for VG SAM .dti files.
class	VisitechReader VisitechReader is the file format reader for Visitech XYS files.
class	VolocityClippingReader VolocityClippingReader is the file format reader for Volocity library clipping files.
class	VolocityReader VolocityReader is the file format reader for Volocity library files.
class	WATOPReader WATOPReader is the file format reader for WA Technology .wat files.
class	WlzReader WlzReader is a file format reader for Woolz files.
class	ZeissCZIReader ZeissCZIReader is the file format reader for Zeiss .czi files.
class	ZeissLSMReader ZeissLSMReader is the file format reader for Zeiss LSM files.
class	ZeissTIFFReader ZeissTIFFReader is the file format reader for Zeiss AxioVision TIFF files and their companion XML file.
class	ZeissZVIReader ZeissZVIReader is the file format reader for Zeiss ZVI files.
class	ZipReader Reader for Zip files.

Uses of FormatHandler in loci.formats.out

Subclasses of FormatHandler in loci.formats.out

Modifier and Type	Class and Description
class	APNGWriter APNGWriter is the file format writer for PNG and APNG files.
class	AVIWriter AVIWriter is the file format writer for AVI files.
class	EPSWriter EPSWriter is the file format writer for Encapsulated PostScript (EPS) files.
class	ICSWriter ICSWriter is the file format writer for ICS files.
class	ImageIOWriter ImageIOWriter is the superclass for file format writers that use the javax.imageio library.
class	JavaWriter JavaWriter is the file format writer for Java source code.
class	JPEG2000Writer JPEG2000Writer is the file format writer for JPEG2000 files.
class	JPEGWriter JPEGWriter is the file format writer for JPEG files.
class	LegacyQTWriter LegacyQTWriter is a file format writer for QuickTime movies.
class	OMETiffWriter OMETiffWriter is the file format writer for OME-TIFF files.
class	OMEXMLWriter OMEXMLWriter is the file format writer for OME-XML files.
class	QTWriter QTWriter is the file format writer for uncompressed QuickTime movie files.
class	TiffWriter TiffWriter is the file format writer for TIFF files.
class	WlzWriter WlzWriter is the file format writer for Woolz files.

Uses of FormatHandler in loci.ome.io

Subclasses of FormatHandler in loci.ome.io

Modifier and Type	Class and Description
class	OMEReader OMEReader retrieves images on demand from an OME database.
class	OmeroReader Implementation of IFormatReader for use in export from an OMERO Beta 4.2.x database.
class	OMEWriter Uploads images to an OME server.