Deprecated API

Contents

• Deprecated Interfaces
• Deprecated Classes
• Deprecated Fields
• Deprecated Methods
• Deprecated Constructors

Deprecated Interfaces

Interface and Description
ome.api.IShare
loci.ome.io.services.OMEReaderWriterService As of release 5.3.0

Deprecated Classes

Class and Description
ome.services.fulltext.BridgeHelper
omero.cmd.graphs.DiskUsageI will be removed in OMERO 5.4, use DiskUsage2 instead
ome.services.fulltext.FullTextAnalyzer
ome.services.fulltext.FullTextBridge
ome.services.fulltext.FullTextIndexer
ome.services.fulltext.FullTextThread
loci.ome.io.OMECredentials As of release 5.3.0
loci.ome.io.OmeroReader As of release 5.3.0
ome.services.fulltext.ParserSession
ome.services.fulltext.PersistentEventLogLoader
ome.services.fulltext.bridges.ProjectWithImageNameBridge
ome.services.fulltext.SimpleLuceneOptions
ome.services.fulltext.bridges.TablesBridge
ome.formats.importer.Version As of release 5.3.2

Deprecated Fields

Field and Description
omeis.providers.re.data.PlaneFactory.BIT
omeis.providers.re.data.PlaneFactory.DOUBLE_TYPE
omeis.providers.re.quantum.QuantumFactory.EXPONENTIAL
omeis.providers.re.data.PlaneFactory.FLOAT_TYPE
ome.util.actions.PostgresSqlAction.insertFormatSql
omeis.providers.re.data.PlaneFactory.INT16
omeis.providers.re.data.PlaneFactory.INT32
omeis.providers.re.data.PlaneFactory.INT8
omeis.providers.re.quantum.QuantumFactory.LINEAR
omeis.providers.re.quantum.QuantumFactory.LOGARITHMIC
omeis.providers.re.Renderer.PHOTOMETRIC_MONOCHROME
omeis.providers.re.quantum.QuantumFactory.POLYNOMIAL
ome.formats.importer.ImportConfig.targetClass
ome.formats.importer.ImportConfig.targetId
omeis.providers.re.data.PlaneFactory.UINT16
omeis.providers.re.data.PlaneFactory.UINT32
omeis.providers.re.data.PlaneFactory.UINT8

Deprecated Methods

Method and Description
omeis.providers.re.RenderingEngine.addCodomainMap(CodomainMapContext)
ome.services.RenderingBean.addCodomainMap(CodomainMapContext)
omero.gateway.util.PojoMapper.asDataObjects(Collection) Use PojoMapper.convertToDataObjects(Collection) instead
omero.gateway.util.PojoMapper.asDataObjects(IObject[]) Use PojoMapper.convertToDataObjects(Collection) instead
omero.gateway.util.PojoMapper.asDataObjects(List) Use PojoMapper.convertToDataObjects(Collection) instead
omero.gateway.util.PojoMapper.asDataObjectsAsList(Collection) Use PojoMapper.convertToDataObjects(Collection) instead
omero.gateway.util.Requests.chgrp(Map<String, List<Long>>, boolean, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(Map<String, List<Long>>, ChildOption, boolean, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(Map<String, List<Long>>, ChildOption, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(Map<String, List<Long>>, List<ChildOption>, boolean, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(Map<String, List<Long>>, List<ChildOption>, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(Map<String, List<Long>>, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, List<Long>, boolean, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, List<Long>, ChildOption, boolean, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, List<Long>, ChildOption, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, List<Long>, List<ChildOption>, boolean, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, List<Long>, List<ChildOption>, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, List<Long>, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, Long, boolean, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, Long, ChildOption, boolean, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, Long, ChildOption, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, Long, List<ChildOption>, boolean, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, Long, List<ChildOption>, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chgrp(String, Long, long) use Requests.Chgrp2Builder from Requests.chgrp(), see this method for an example
omero.gateway.util.Requests.chmod(Map<String, List<Long>>, boolean, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(Map<String, List<Long>>, ChildOption, boolean, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(Map<String, List<Long>>, ChildOption, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(Map<String, List<Long>>, List<ChildOption>, boolean, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(Map<String, List<Long>>, List<ChildOption>, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(Map<String, List<Long>>, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, List<Long>, boolean, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, List<Long>, ChildOption, boolean, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, List<Long>, ChildOption, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, List<Long>, List<ChildOption>, boolean, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, List<Long>, List<ChildOption>, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, List<Long>, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, Long, boolean, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, Long, ChildOption, boolean, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, Long, ChildOption, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, Long, List<ChildOption>, boolean, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, Long, List<ChildOption>, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chmod(String, Long, String) use Requests.Chmod2Builder from Requests.chmod(), see this method for an example
omero.gateway.util.Requests.chown(Map<String, List<Long>>, boolean, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(Map<String, List<Long>>, ChildOption, boolean, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(Map<String, List<Long>>, ChildOption, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(Map<String, List<Long>>, List<ChildOption>, boolean, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(Map<String, List<Long>>, List<ChildOption>, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(Map<String, List<Long>>, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, List<Long>, boolean, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, List<Long>, ChildOption, boolean, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, List<Long>, ChildOption, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, List<Long>, List<ChildOption>, boolean, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, List<Long>, List<ChildOption>, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, List<Long>, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, Long, boolean, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, Long, ChildOption, boolean, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, Long, ChildOption, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, Long, List<ChildOption>, boolean, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, Long, List<ChildOption>, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.Requests.chown(String, Long, long) use Requests.Chown2Builder from Requests.chown(), see this method for an example
omero.gateway.util.PojoMapper.convertTypeForSearchByQuery(Class) Not used.
ome.logic.LdapImpl.createUserFromLdap(String, String)
ome.services.blitz.repo.RepositoryDaoImpl.currentContext(Principal)
omero.gateway.util.Requests.delete(Map<String, List<Long>>) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(Map<String, List<Long>>, boolean) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(Map<String, List<Long>>, ChildOption) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(Map<String, List<Long>>, ChildOption, boolean) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(Map<String, List<Long>>, List<ChildOption>) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(Map<String, List<Long>>, List<ChildOption>, boolean) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, List<Long>) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, List<Long>, boolean) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, List<Long>, ChildOption) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, List<Long>, ChildOption, boolean) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, List<Long>, List<ChildOption>) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, List<Long>, List<ChildOption>, boolean) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, Long) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, Long, boolean) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, Long, ChildOption) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, Long, ChildOption, boolean) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, Long, List<ChildOption>) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.util.Requests.delete(String, Long, List<ChildOption>, boolean) use Requests.Delete2Builder from Requests.delete(), see this method for an example
omero.gateway.facility.DataManagerFacility.deleteObject(SecurityContext, IObject) Use the asynchronous method DataManagerFacility.delete(SecurityContext, IObject) instead
omero.gateway.facility.DataManagerFacility.deleteObjects(SecurityContext, List<IObject>) Use the asynchronous method DataManagerFacility.delete(SecurityContext, List) instead
omero.gateway.model.ImageAcquisitionData.getAirPressure() Replaced by ImageAcquisitionData.getAirPressure(UnitsPressure)
ome.logic.PixelsImpl.getAllEnumerations(Class<T>)
omero.gateway.model.FilterData.getCutIn() Replaced by FilterData.getCutIn(UnitsLength)
omero.gateway.model.FilterData.getCutInTolerance() Replaced by FilterData.getCutInTolerance(UnitsLength)
omero.gateway.model.FilterData.getCutOut() Replaced by FilterData.getCutOut(UnitsLength)
omero.gateway.model.FilterData.getCutOutTolerance() Replaced by FilterData.getCutOutTolerance(UnitsLength)
ome.formats.OMEROMetadataStoreClient.getDefaultGroupLevel()
omero.gateway.model.ChannelAcquisitionData.getDetectorSettingsReadOutRate() Replaced by ChannelAcquisitionData.getDetectorSettingsReadOutRate(UnitsFrequency)
omero.gateway.model.ChannelAcquisitionData.getDetectorSettingsVoltage() Replaced by ChannelAcquisitionData.getDetectorSettingsVoltage(UnitsElectricPotential)
omero.gateway.model.ChannelData.getEmissionWavelength() Replaced by ChannelData.getEmissionWavelength(UnitsLength)
ome.logic.PixelsImpl.getEnumeration(Class<T>, String)
omero.gateway.model.ChannelData.getExcitationWavelength() Replaced by ChannelData.getExcitationWavelength(UnitsLength)
omero.gateway.model.ShapeSettingsData.getFontSize() Replaced by ShapeSettingsData.getFontSize(UnitsLength)
ome.services.blitz.fire.Registry.getInternalServiceFactory(String, String, int, int, String) OMERO 5.4 uses group ID instead of group name
ome.services.blitz.fire.Registry.Impl.getInternalServiceFactory(String, String, int, int, String)
omero.gateway.model.LightSourceData.getLaserRepetitionRate() Replaced by LightSourceData.getLaserRepetitionRate(UnitsFrequency)
omero.gateway.model.LightSourceData.getLaserWavelength() Replaced by LightSourceData.getLaserWavelength(UnitsLength)
omero.gateway.model.ChannelAcquisitionData.getLightSettingsWavelength() Replaced by ChannelAcquisitionData.getLightSettingsWavelength(UnitsLength)
omero.gateway.model.PolylineData.getMaskPoints()
omero.gateway.model.ChannelData.getPinholeSize() Replaced by ChannelData.getPinholeSize(UnitsLength)
ome.io.nio.PixelsService.getPixelBuffer(Pixels) In the future callers should use the more descriptive PixelsService.getPixelBuffer(Pixels, boolean).
omero.gateway.model.PixelsData.getPixelSizeX() Replaced by PixelsData.getPixelSizeX(UnitsLength)
omero.gateway.model.PixelsData.getPixelSizeY() Replaced by PixelsData.getPixelSizeY(UnitsLength)
omero.gateway.model.PixelsData.getPixelSizeZ() Replaced by PixelsData.getPixelSizeZ(UnitsLength)
omero.gateway.facility.RawDataFacility.getPlane(SecurityContext, PixelsData, int, int, int, boolean) Use getPlane(SecurityContext, PixelsData, z, t, c) instead
omero.gateway.model.PolygonData.getPoints1()
omero.gateway.model.PolylineData.getPoints1()
omero.gateway.model.PolygonData.getPoints2()
omero.gateway.model.PolylineData.getPoints2()
omero.gateway.model.ImageAcquisitionData.getPositionX() Replaced by ImageAcquisitionData.getPositionX(UnitsLength)
omero.gateway.model.WellSampleData.getPositionX() Replaced by WellSampleData.getPositionX(UnitsLength)
omero.gateway.model.ImageAcquisitionData.getPositionY() Replaced by ImageAcquisitionData.getPositionY(UnitsLength)
omero.gateway.model.WellSampleData.getPositionY() Replaced by WellSampleData.getPositionY(UnitsLength)
omero.gateway.model.ImageAcquisitionData.getPositionZ() Replaced by ImageAcquisitionData.getPositionZ(UnitsLength)
omero.gateway.model.LightSourceData.getPower() Replaced by LightSourceData.getPower(UnitsPower)
ome.services.graphs.GraphPathBean.getSimpleProperties(String) instead use GraphPathBean.getSimpleProperties(String, boolean) setting isNested to false
omero.gateway.model.ShapeSettingsData.getStrokeWidth() Replaced by ShapeSettingsData.getStrokeWidth(UnitsLength)
omero.gateway.model.ImageAcquisitionData.getTemperature() Replaced by ImageAcquisitionData.getTemperature(UnitsTemperature)
ome.logic.RepositoryInfoImpl.getUsageFraction()
ome.logic.RepositoryInfoImpl.getUsedSpaceInKilobytes()
omero.gateway.model.DetectorData.getVoltage() Replaced by DetectorData.getVoltage(UnitsElectricPotential)
omero.gateway.model.PlateData.getWellOriginX() Replaced by PlateData.getWellOriginX(UnitsLength)
omero.gateway.model.PlateData.getWellOriginY() Replaced by PlateData.getWellOriginY(UnitsLength)
omero.gateway.model.ObjectiveData.getWorkingDistance() Replaced by ObjectiveData.getWorkingDistance(UnitsLength)
ome.util.SqlAction.insertFormat(String)
ome.util.actions.PostgresSqlAction.insertFormat(String)
ome.services.blitz.impl.ProcessorCallbackI.isAccepted(boolean, String, String, Current)
omero.gateway.facility.BrowseFacility.loadHierarchy(SecurityContext, Class, List<Long>, Parameters) Please use the more generic method BrowseFacility.getHierarchy(SecurityContext, Class, long)
omero.gateway.facility.BrowseFacility.loadHierarchy(SecurityContext, Class, long) Please use the more generic method BrowseFacility.getHierarchy(SecurityContext, Class, List, Parameters)
ome.logic.LdapImpl.loadLdapGroups(String, DistinguishedName)
ome.security.basic.OmeroInterceptor.managedExternalInfo(boolean, IObject, Details, Details, Details)
omero.gateway.util.Requests.option(List<String>, List<String>) use Requests.ChildOptionBuilder from Requests.option(), see this method for an example
omero.gateway.util.Requests.option(List<String>, List<String>, List<String>, List<String>) use Requests.ChildOptionBuilder from Requests.option(), see this method for an example
omero.gateway.util.Requests.option(List<String>, List<String>, String, String) use Requests.ChildOptionBuilder from Requests.option(), see this method for an example
omero.gateway.util.Requests.option(String, String) use Requests.ChildOptionBuilder from Requests.option(), see this method for an example
omero.gateway.util.Requests.option(String, String, List<String>, List<String>) use Requests.ChildOptionBuilder from Requests.option(), see this method for an example
omero.gateway.util.Requests.option(String, String, String, String) use Requests.ChildOptionBuilder from Requests.option(), see this method for an example
ome.services.blitz.repo.PublicRepositoryI.persistLogFile(OriginalFile, Current)
ome.services.graphs.GraphTraversal.planOperation(Session, Collection<? extends IObject>, boolean, boolean) from OMERO 5.4 the session argument is no longer included
ome.services.graphs.GraphTraversal.planOperation(Session, SetMultimap<String, Long>, boolean, boolean) from OMERO 5.4 the session argument is no longer included
omero.cmd.graphs.GraphHelper.prepareGraphTraversal(List<ChildOption>, Set<GraphPolicy.Ability>, GraphPolicy, Iterable<Function<GraphPolicy, GraphPolicy>>, ACLVoter, SystemTypes, GraphPathBean, SetMultimap<String, String>, GraphTraversal.Processor, boolean) from OMERO 5.4 the systemTypes argument is no longer included
omeis.providers.re.RenderingEngine.removeCodomainMap(CodomainMapContext)
ome.services.RenderingBean.removeCodomainMap(CodomainMapContext)
ome.api.IAdmin.reportForgottenPassword(String, String)
omero.gateway.model.ImageAcquisitionData.setAirPressure(double) Replaced by ImageAcquisitionData.setAirPressure(Pressure)
omero.gateway.model.ChannelAcquisitionData.setDetectorSettingsReadOutRate(double) Replaced by ChannelAcquisitionData.setDetectorSettingsReadOutRate(Frequency)
omero.gateway.model.ChannelAcquisitionData.setDetectorSettingsVoltage(double) Replaced by ChannelAcquisitionData.setDetectorSettingsVoltage(ElectricPotential)
ome.api.ILdap.setDN(Long, String) As of release 5.1, relevant model objects have the "ldap" property added to their state.
ome.logic.LdapImpl.setDN(Long, String)
omero.gateway.model.ChannelData.setEmissionWavelength(double) Replaced by ChannelData.setEmissionWavelength(Length)
omero.gateway.model.ChannelData.setExcitationWavelength(double) Replaced by ChannelData.setExcitationWavelength(Length)
omero.gateway.model.ShapeSettingsData.setFontSize(int) Replaced by ShapeSettingsData.setFontSize(Length)
omero.gateway.model.ChannelAcquisitionData.setLightSettingsWavelength(double) Replaced by ChannelAcquisitionData.setLightSettingsWavelength(Length)
ome.services.RenderingBean.setOverlays(Map<byte[], Integer>) As of release 5.1.0, replaced by PlaneDef.setShapeIds(List).
omero.gateway.model.ChannelData.setPinholeSize(double) Replaced by ChannelData.setPinholeSize(Length)
omero.gateway.model.PixelsData.setPixelSizeX(double) Replaced by PixelsData.setPixelSizeX(Length)
omero.gateway.model.PixelsData.setPixelSizeY(double) Replaced by PixelsData.setPixelSizeY(Length)
omero.gateway.model.PixelsData.setPixelSizeZ(double) Replaced by PixelsData.setPixelSizeZ(Length)
omero.gateway.model.PolygonData.setPoints(List<Point2D.Double>, List<Point2D.Double>, List<Point2D.Double>, List<Integer>)
omero.gateway.model.PolylineData.setPoints(List<Point2D.Double>, List<Point2D.Double>, List<Point2D.Double>, List<Integer>)
omero.gateway.model.ImageAcquisitionData.setPositionX(double) Replaced by ImageAcquisitionData.setPositionX(Length)
omero.gateway.model.ImageAcquisitionData.setPositionY(double) Replaced by ImageAcquisitionData.setPositionY(Length)
omero.gateway.model.ImageAcquisitionData.setPositionZ(double) Replaced by ImageAcquisitionData.setPositionZ(Length)
omero.gateway.model.ShapeSettingsData.setStrokeWidth(Double) Replaced by ShapeSettingsData.setStrokeWidth(Length)
omero.gateway.model.ImageAcquisitionData.setTemperature(double) Replaced by ImageAcquisitionData.setTemperature(Temperature)
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, boolean, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, boolean, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, ChildOption, boolean, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, ChildOption, boolean, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, ChildOption, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, ChildOption, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, List<ChildOption>, boolean, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, List<ChildOption>, boolean, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, List<ChildOption>, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, List<ChildOption>, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(Map<String, List<Long>>, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, boolean, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, boolean, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, ChildOption, boolean, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, ChildOption, boolean, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, ChildOption, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, ChildOption, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, List<ChildOption>, boolean, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, List<ChildOption>, boolean, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, List<ChildOption>, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, List<ChildOption>, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, List<Long>, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, boolean, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, boolean, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, ChildOption, boolean, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, ChildOption, boolean, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, ChildOption, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, ChildOption, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, List<ChildOption>, boolean, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, List<ChildOption>, boolean, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, List<ChildOption>, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, List<ChildOption>, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, List<String>, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.skipHead(String, Long, String, GraphModify2) use Requests.SkipHeadBuilder from Requests.skipHead(), see this method for an example
omero.gateway.util.Requests.Chown2Builder.toGroup(Experimenter) use Requests.Chown2Builder.toUser(Experimenter)
omeis.providers.re.RenderingEngine.updateCodomainMap(CodomainMapContext)
ome.services.RenderingBean.updateCodomainMap(CodomainMapContext)

Deprecated Constructors

Constructor and Description
omero.cmd.graphs.Chgrp2I(ACLVoter, Roles, SystemTypes, GraphPathBean, Deletion, Set<Class<? extends IObject>>, GraphPolicy, SetMultimap<String, String>, ApplicationContext) from OMERO 5.4 the systemTypes argument is no longer included
omero.cmd.graphs.Chmod2I(ACLVoter, Roles, SystemTypes, GraphPathBean, Deletion, Set<Class<? extends IObject>>, GraphPolicy, SetMultimap<String, String>, ApplicationContext) from OMERO 5.4 the systemTypes argument is no longer included
omero.cmd.graphs.Chown2I(ACLVoter, Roles, SystemTypes, GraphPathBean, Deletion, Set<Class<? extends IObject>>, GraphPolicy, SetMultimap<String, String>, ApplicationContext) from OMERO 5.4 the systemTypes argument is no longer included
omero.cmd.graphs.Delete2I(ACLVoter, Roles, SystemTypes, GraphPathBean, Deletion, Set<Class<? extends IObject>>, GraphPolicy, SetMultimap<String, String>, ApplicationContext) from OMERO 5.4 the systemTypes argument is no longer included
omero.cmd.graphs.DiskUsage2I(ACLVoter, Roles, SystemTypes, GraphPathBean, Set<Class<? extends IObject>>, GraphPolicy) from OMERO 5.4 the systemTypes argument is no longer included
omero.cmd.graphs.DuplicateI(ACLVoter, Roles, SystemTypes, GraphPathBean, Deletion, Set<Class<? extends IObject>>, GraphPolicy, SetMultimap<String, String>, ApplicationContext) from OMERO 5.4 the systemTypes argument is no longer included
ome.model.units.ElectricPotential()
omero.cmd.graphs.FindChildrenI(ACLVoter, Roles, SystemTypes, GraphPathBean, Set<Class<? extends IObject>>, GraphPolicy) from OMERO 5.4 the systemTypes argument is no longer included
omero.cmd.graphs.FindParentsI(ACLVoter, Roles, SystemTypes, GraphPathBean, Set<Class<? extends IObject>>, GraphPolicy) from OMERO 5.4 the systemTypes argument is no longer included
ome.model.units.Frequency()
omero.cmd.graphs.GraphRequestFactory(ACLVoter, Roles, SystemTypes, GraphPathBean, Deletion, Map<Class<? extends Request>, List<String>>, Map<Class<? extends Request>, List<GraphPolicyRule>>, List<String>, Set<String>) from OMERO 5.4 the systemTypes argument is no longer included
ome.services.graphs.GraphTraversal(Session, EventContext, ACLVoter, SystemTypes, GraphPathBean, SetMultimap<String, String>, GraphPolicy, GraphTraversal.Processor) from OMERO 5.4 the systemTypes argument is no longer included
ome.model.units.Length()
ome.model.internal.NamedValue()
omero.gateway.model.PolygonData(List<Point2D.Double>, List<Point2D.Double>, List<Point2D.Double>, List<Integer>)
omero.gateway.model.PolylineData(List<Point2D.Double>, List<Point2D.Double>, List<Point2D.Double>, List<Integer>)
ome.model.units.Power()
ome.model.units.Pressure()
ome.model.units.Temperature()
ome.model.units.Time()