- a - Variable in class jj2000.j2k.entropy.decoder.MQDecoder
-
The current interval
- a - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The current interval
- a00 - Variable in class ome.xml.model.AffineTransform
-
- a01 - Variable in class ome.xml.model.AffineTransform
-
- a02 - Variable in class ome.xml.model.AffineTransform
-
- a10 - Variable in class ome.xml.model.AffineTransform
-
- a11 - Variable in class ome.xml.model.AffineTransform
-
- a12 - Variable in class ome.xml.model.AffineTransform
-
- A4_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
-
- A5_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
-
- abort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- Abort(String) - Method in class loci.poi.hssf.model.FormulaParser
-
Report Error and Halt
- abortable - Variable in class loci.poi.hssf.eventmodel.EventRecordFactory
-
instance is abortable or not
- abortable - Variable in class loci.poi.hssf.eventmodel.ListenerWrapper
-
- AbortableHSSFListener - Class in loci.poi.hssf.eventusermodel
-
Interface for use with the HSSFRequest and HSSFEventFactory.
- AbortableHSSFListener() - Constructor for class loci.poi.hssf.eventusermodel.AbortableHSSFListener
-
- abortableProcessEvents(HSSFRequest, InputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory
-
Processes a DocumentInputStream into essentially Record events.
- abortableProcessRecord(Record) - Method in class loci.poi.hssf.eventusermodel.AbortableHSSFListener
-
Process an HSSF Record.
- abortableProcessWorkbookEvents(HSSFRequest, POIFSFileSystem) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory
-
Processes a file into essentially record events.
- About - Class in loci.plugins
-
Displays a small information dialog about the Bio-Formats Plugins package.
- About() - Constructor for class loci.plugins.About
-
- about() - Static method in class loci.plugins.About
-
- abs() - Method in class loci.plugins.util.RecordedImageProcessor
-
- absoluteDay(Calendar) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil
-
Given a Calendar, return the number of days since 1900/12/31.
- absoluteTime - Variable in class loci.formats.in.PrairieMetadata.Frame
-
absoluteTime attribute of this <Frame>.
- AbstractEscherHolderRecord - Class in loci.poi.hssf.record
-
The escher container record is used to hold escher records.
- AbstractEscherHolderRecord() - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- AbstractEscherHolderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord
-
Constructs a Bar record and sets its fields appropriately.
- AbstractFunctionPtg - Class in loci.poi.hssf.record.formula
-
This class provides the base functionality for Excel sheet functions
There are two kinds of function Ptgs - tFunc and tFuncVar
Therefore, this class will have ONLY two subclasses
- AbstractFunctionPtg() - Constructor for class loci.poi.hssf.record.formula.AbstractFunctionPtg
-
- AbstractNIOHandle - Class in loci.common
-
A wrapper for buffered NIO logic that implements the IRandomAccess interface.
- AbstractNIOHandle() - Constructor for class loci.common.AbstractNIOHandle
-
- AbstractOMEModelObject - Class in ome.xml.model
-
- AbstractOMEModelObject() - Constructor for class ome.xml.model.AbstractOMEModelObject
-
- AbstractOMEXMLMetadata - Class in loci.formats.ome
-
- AbstractOMEXMLMetadata() - Constructor for class loci.formats.ome.AbstractOMEXMLMetadata
-
- AbstractOMEXMLMetadata - Class in ome.xml.meta
-
A utility class for constructing and manipulating OME-XML DOMs.
- AbstractOMEXMLMetadata() - Constructor for class ome.xml.meta.AbstractOMEXMLMetadata
-
Creates a new OME-XML metadata object.
- AbstractService - Class in loci.common.services
-
- AbstractService() - Constructor for class loci.common.services.AbstractService
-
- AbstractShape - Class in loci.poi.hssf.model
-
An abstract shape is the lowlevel model for a shape.
- AbstractShape() - Constructor for class loci.poi.hssf.model.AbstractShape
-
- ac - Variable in class loci.formats.in.FakeReader
-
Channel of last opened image plane.
- accept(File) - Method in class loci.formats.gui.ComboFileFilter
-
Accepts files with the proper filename prefix.
- accept(File) - Method in class loci.formats.gui.ExtensionFileFilter
-
Accepts files with the proper extensions.
- accept(File) - Method in class loci.formats.gui.FormatFileFilter
-
Accepts files in accordance with the file format reader.
- accept(File) - Method in class loci.formats.gui.NoExtensionFileFilter
-
Accepts files with no extension.
- accept(String) - Method in class loci.formats.NumberFilter
-
Tests if a specified file should be included in a file list.
- accept(File) - Method in class loci.formats.NumberFilter
-
Tests if a specified file should be included in a file list.
- ACCESS_TIME - Static variable in class loci.tests.testng.Configuration
-
- accumulate - Variable in class loci.formats.in.SDTInfo
-
- ACCUMULATION - Static variable in class loci.formats.in.CellSensReader
-
- ACCUMULATION_MODE - Static variable in class loci.formats.in.CellSensReader
-
- acquire - Variable in class loci.formats.in.ZeissLSMReader.SubBlock
-
- acquiredDate - Variable in class loci.formats.in.LIFReader
-
- acquiredDate - Variable in class loci.formats.in.ZeissCZIReader
-
- acquiredDate - Variable in class loci.formats.in.ZeissLSMReader
-
- ACQUISITION_CYCLE_TIME - Static variable in class loci.formats.in.FluoviewReader
-
- ACQUISITION_FILE - Static variable in class loci.formats.in.ScanrReader
-
- ACQUISITION_PROPERTIES - Static variable in class loci.formats.in.CellSensReader
-
- ACQUISITION_TIME_TAG - Static variable in class loci.formats.in.FlowSightReader
-
- acquisitionDate - Variable in class loci.formats.in.BioRadSCNReader
-
- acquisitionDate - Variable in class loci.formats.in.SISReader
-
- acquisitionDate - Variable in class ome.xml.model.Image
-
- acquisitionDates - Variable in class loci.formats.in.FlexReader
-
- acquisitionMode - Variable in class loci.formats.in.ZeissCZIReader.Channel
-
- acquisitionMode - Variable in class ome.xml.model.Channel
-
- AcquisitionMode - Enum in ome.xml.model.enums
-
- AcquisitionMode(String) - Constructor for enum ome.xml.model.enums.AcquisitionMode
-
- AcquisitionModeEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for AcquisitionMode.
- AcquisitionModeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler
-
- acquisitions - Variable in class loci.formats.in.ZeissCZIReader
-
- acquisitionTime - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- act - Variable in class loci.formats.in.GIFReader
-
Active color table.
- actionPerformed(ActionEvent) - Method in class loci.formats.gui.CacheComponent
-
Handles combo box changes.
- actionPerformed(ActionEvent) - Method in class loci.formats.gui.DataConverter
-
- actionPerformed(ActionEvent) - Method in class loci.formats.gui.ImageViewer
-
Handles menu commands.
- actionPerformed(ActionEvent) - Method in class loci.formats.tools.EditTiffG
-
- actionPerformed(ActionEvent) - Method in class loci.plugins.config.ConfigWindow
-
- actionPerformed(ActionEvent) - Method in class loci.plugins.in.SeriesDialog
-
- actionPerformed(ActionEvent) - Method in class loci.plugins.shortcut.ShortcutPanel
-
Handles button presses.
- actionPerformed(ActionEvent) - Method in class loci.plugins.util.DataBrowser
-
- actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow
-
- actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow.SearchBox
-
- active - Variable in class loci.formats.in.FV1000Reader.ChannelData
-
- active - Variable in class loci.formats.in.LeicaHandler.Detector
-
- active - Variable in class loci.formats.in.LeicaReader.Detector
-
- ACTIVE_CHANNEL - Static variable in class loci.formats.in.CellSensReader
-
- ACTIVE_LAYER_INDEX_VECTOR - Static variable in class loci.formats.in.CellSensReader
-
- ACTIVE_LAYER_VECTOR - Static variable in class loci.formats.in.CellSensReader
-
- ACTIVE_PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord
-
- ACTIVE_PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord
-
- ACTIVE_PANE_UPER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord
-
- ACTIVE_PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord
-
- ACTIVE_STACK_DIMENSION - Static variable in class loci.formats.in.CellSensReader
-
- activeChannelIndices - Variable in class loci.formats.in.LeicaReader
-
- activeChannels - Variable in class loci.formats.in.PrairieMetadata
-
Set of active channel indices.
- activeDetector - Variable in class loci.formats.in.LIFReader
-
- activePane - Variable in class loci.poi.hssf.util.PaneInformation
-
- activePlane - Variable in class loci.formats.in.OperettaReader.OperettaHandler
-
- activeSrcHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The height of the source region that will actually be copied
into the destination image, taking into account all
susbampling, offsetting, and clipping.
- activeSrcMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The X coordinate of the upper-left source pixel that will
actually be copied into the destination image, taking into
account all subsampling, offsetting, and clipping.
- activeSrcMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The Y coordinate of the upper-left source pixel that will
actually be copied into the destination image, taking into account
all subsampling, offsetting, and clipping.
- activeSrcWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The width of the source region that will actually be copied
into the destination image, taking into account all
susbampling, offsetting, and clipping.
- ACTUAL_TEMPERATURE - Static variable in class loci.formats.in.FluoviewReader
-
- actualBytes - Variable in class jj2000.j2k.entropy.encoder.EBCOTLayer
-
The actual number of bytes which are consumed by the the current and
any previous layers.
- adcDE - Variable in class loci.formats.in.SDTInfo
-
ADC sample delay (SPC-930).
- adcRE - Variable in class loci.formats.in.SDTInfo
-
- adcResShift - Variable in class loci.formats.in.SPCReader
-
- adcZoom - Variable in class loci.formats.in.SDTInfo
-
- add(byte) - Method in class loci.formats.codec.ByteVector
-
- add(byte[]) - Method in class loci.formats.codec.ByteVector
-
- add(byte[], int, int) - Method in class loci.formats.codec.ByteVector
-
- add(byte[], int, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- add(int[], int, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- add(double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- add(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- Add() - Method in class loci.poi.hssf.model.FormulaParser
-
Recognize and Translate an Add
- add(int, Record) - Method in class loci.poi.hssf.model.WorkbookRecordList
-
- ADD - Static variable in class loci.poi.hssf.record.formula.AddPtg
-
- ADD - Static variable in class loci.poi.hssf.record.formula.UnaryPlusPtg
-
- add(int, double) - Method in class loci.poi.util.DoubleList
-
add the specfied value at the specified index
- add(double) - Method in class loci.poi.util.DoubleList
-
Appends the specified element to the end of this list
- add(int, int) - Method in class loci.poi.util.IntList
-
add the specfied value at the specified index
- add(int) - Method in class loci.poi.util.IntList
-
Appends the specified element to the end of this list
- add(Object) - Method in class loci.poi.util.IntMapper
-
Appends the specified element to the end of this list
- add(int, short) - Method in class loci.poi.util.ShortList
-
add the specfied value at the specified index
- add(short) - Method in class loci.poi.util.ShortList
-
Appends the specified element to the end of this list
- add(Integer) - Method in class ome.units.unit.Unit
-
Increase the scaling offset in this unit by a scalar.
- add(Double) - Method in class ome.units.unit.Unit
-
Increase the scaling offset in this unit by a scalar.
- add(T) - Method in class ome.xml.model.ReferenceList
-
- add(int, T) - Method in class ome.xml.model.ReferenceList
-
- add1DBits(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Get code for run and add to compressed bitstream.
- add2DBits(byte[], int, int[][], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Place entry from mode table into compressed bitstream.
- addAll(DoubleList) - Method in class loci.poi.util.DoubleList
-
Appends all of the elements in the specified collection to the
end of this list, in the order that they are returned by the
specified collection's iterator.
- addAll(int, DoubleList) - Method in class loci.poi.util.DoubleList
-
Inserts all of the elements in the specified collection into
this list at the specified position.
- addAll(IntList) - Method in class loci.poi.util.IntList
-
Appends all of the elements in the specified collection to the
end of this list, in the order that they are returned by the
specified collection's iterator.
- addAll(int, IntList) - Method in class loci.poi.util.IntList
-
Inserts all of the elements in the specified collection into
this list at the specified position.
- addAll(ShortList) - Method in class loci.poi.util.ShortList
-
Appends all of the elements in the specified collection to the
end of this list, in the order that they are returned by the
specified collection's iterator.
- addAll(int, ShortList) - Method in class loci.poi.util.ShortList
-
Inserts all of the elements in the specified collection into
this list at the specified position.
- addAll(Collection<? extends T>) - Method in class ome.xml.model.ReferenceList
-
- addAll(int, Collection<? extends T>) - Method in class ome.xml.model.ReferenceList
-
- addAllowedTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
Adds a TIFFTagSet object to the list of allowed
tag sets.
- addArea(int, short, int, short) - Method in class loci.poi.hssf.record.MergeCellsRecord
-
Add an area to consider a merged cell.
- addArgumentPointer() - Method in class loci.poi.hssf.model.FormulaParser
-
Adds a pointer to the last token to the latest function argument list.
- addBinData(BinData) - Method in class ome.xml.model.Pixels
-
- addBooleanAnnotation(BooleanAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addBreak(short, short, short) - Method in class loci.poi.hssf.record.PageBreakRecord
-
Adds the page break at the specified parameters
- addBSERecord(EscherBSERecord) - Method in class loci.poi.hssf.model.Workbook
-
- addByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
Adds the specified data to the end of the byte array stream.
- addCacheListener(CacheListener) - Method in class loci.formats.cache.Cache
-
- addCacheListener(CacheListener) - Method in interface loci.formats.cache.CacheReporter
-
Adds a listener for status update events.
- addCacheListener(CacheListener) - Method in class loci.formats.cache.CacheStrategy
-
- addCell(HSSFCell) - Method in class loci.poi.hssf.usermodel.HSSFRow
-
used internally to add a cell.
- addCellOffset(short) - Method in class loci.poi.hssf.record.DBCellRecord
-
- addChannel(Channel) - Method in class ome.xml.model.Pixels
-
- addChar(char, int) - Method in class loci.poi.hssf.usermodel.FontDetails
-
- addChars(char[], int[]) - Method in class loci.poi.hssf.usermodel.FontDetails
-
- AddCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
-
- addCheckbox(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog
-
Adds a checkbox to the given dialog object corresponding
to the boolean option identified by the specified key.
- addChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty
-
Add a new child to the collection of children
- addChild(Property) - Method in interface loci.poi.poifs.property.Parent
-
Add a new child to the collection of children
- addChildNode(IIOMetadataNode, String, Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- addChildNode(IIOMetadataNode, String, Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- addChildRecord(EscherRecord) - Method in class loci.poi.ddf.EscherContainerRecord
-
- addChildRecord(EscherRecord) - Method in class loci.poi.ddf.UnknownEscherRecord
-
- addChoice(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog
-
Adds a choice to the given dialog object corresponding
to the string option identified by the specified key.
- addClass(int, Class<? extends T>) - Method in class loci.formats.ClassList
-
Adds the given class, which must be assignable
to the base class, to the list.
- addClass(Class<? extends T>) - Method in class loci.formats.ClassList
-
Adds the given class, which must be assignable
to the base class, to the list.
- addCluster(int, int) - Method in class loci.poi.ddf.EscherDggRecord
-
- addColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette
-
Adds a new color into an empty color slot.
- addColumn(Object) - Method in class mdbtools.dbengine.sql.Select
-
- addComment(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- addCommentAnnotation(CommentAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addDataset(Dataset) - Method in class ome.xml.model.OME
-
- addDbcell(int) - Method in class loci.poi.hssf.record.IndexRecord
-
- addDetector(Detector) - Method in class ome.xml.model.Instrument
-
- addDichroic(Dichroic) - Method in class ome.xml.model.Instrument
-
- addDirectory(String, int) - Method in class loci.formats.in.L2DReader
-
Recursively add all of the files in the given directory to the
used file list.
- addDirectory(DirectoryProperty) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
-
add a new DirectoryProperty
- addDocument(POIFSDocument) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
-
add a new POIFSDocument
- addDoubleAnnotation(DoubleAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addElements() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
Adds the elements into this format object based on the XML
schema and DTD.
- addElements() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
Adds the elements into this format object based on the XML
schema and DTD.
- addEntry(Comparable<Object>, DefaultListModel) - Static method in class loci.plugins.config.ConfigWindow
-
- addEOFB(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Add an End-of-Facsimile-Block (EOFB == 0x001001) to the compressed
bitstream.
- addEOL(boolean, boolean, boolean, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Add an End-of-Line (EOL == 0x001) to the compressed bitstream
with optional byte alignment.
- addEscherProperty(EscherProperty) - Method in class loci.poi.ddf.EscherOptRecord
-
Add a property to this record.
- addEscherRecord(int, EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- addEscherRecord(EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- addExperiment(Experiment) - Method in class ome.xml.model.OME
-
- addExperimenter(Experimenter) - Method in class ome.xml.model.OME
-
- addExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.OME
-
- addFileAnnotation(FileAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addFileToList(String, boolean) - Method in class loci.formats.in.DicomReader
-
Determine if the given file belongs in the same dataset as this file.
- addFilter(Filter) - Method in class ome.xml.model.Instrument
-
- addFilterSet(FilterSet) - Method in class ome.xml.model.Instrument
-
- addFolder(Folder) - Method in class ome.xml.model.OME
-
- addFormatRun(UnicodeString.FormatRun) - Method in class loci.poi.hssf.record.UnicodeString
-
Adds a font run to the formatted string.
- addGlobalMeta(String, Object) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, boolean) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, byte) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, short) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, int) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, long) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, float) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, double) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, char) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMetaList(String, Object) - Method in class loci.formats.FormatReader
-
Add the given key/value pair to the global metadata hashtable.
- addGroupBy(FQColumn) - Method in class mdbtools.dbengine.sql.Select
-
- addImage(Image) - Method in class ome.xml.model.OME
-
- addInfo(int, String) - Method in class loci.formats.in.DicomReader
-
- addInfo(int, int) - Method in class loci.formats.in.DicomReader
-
- addInfoRecord(ExtSSTInfoSubRecord) - Method in class loci.poi.hssf.record.ExtSSTRecord
-
- addInstrument(Instrument) - Method in class ome.xml.model.OME
-
- additionalMakeup - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- addLightSource(LightSource) - Method in class ome.xml.model.Instrument
-
- addLightSourceSettings(LightSourceSettings) - Method in class ome.xml.model.MicrobeamManipulation
-
- addListAnnotation(ListAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addListener(HSSFListener, short) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest
-
add an event listener for a particular record type.
- addListenerForAllRecords(HSSFListener) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest
-
This is the equivilent of calling addListener(myListener, sid) for EVERY
record in the loci.poi.hssf.record package.
- addLongAnnotation(LongAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addMapAnnotation(MapAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addMergedRegion(int, short, int, short) - Method in class loci.poi.hssf.model.Sheet
-
- addMergedRegion(Region) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
adds a merged region of cells (hence those cells form one)
- addMeta(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader
-
Adds an entry to the specified Hashtable.
- addMetadataOnly(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService
-
Insert a MetadataOnly element under the Image specified by 'index' in the
given OME-XML metadata object.
- addMetadataOnly(OMEXMLMetadata, int, boolean) - Method in interface loci.formats.services.OMEXMLService
-
Insert a MetadataOnly element under the Image specified by 'index' in the
given OME-XML metadata object.
- addMetadataOnly(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- addMetadataOnly(OMEXMLMetadata, int, boolean) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- addMetaList(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader
-
Add the given key/value pair to the given hashtable.
- addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experiment
-
- addModelObject(String, OMEModelObject) - Method in interface ome.xml.model.OMEModel
-
- addModelObject(String, OMEModelObject) - Method in class ome.xml.model.OMEModelImpl
-
- addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in interface loci.formats.services.OMEXMLService
-
Adds ModuloAlong* annotations to the given OME-XML metadata object,
using the given CoreMetadata object to determine modulo dimensions.
- addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- addName(NameRecord) - Method in class loci.poi.hssf.model.Workbook
-
creates new name
- addNode(Box) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- addNTP(int, int) - Method in class jj2000.j2k.codestream.reader.CBlkInfo
-
Adds the number of new truncation for specified layer.
- addObjective(Objective) - Method in class ome.xml.model.Instrument
-
- addOption(String, String) - Method in class loci.formats.ClassList
-
Add a key/value pair to the list of options.
- addOptPoint(float, int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo
-
Adds a new optimization point, with target bitrate 'brate' and with
'elyrs' (unoptimized) extra layers after it.
- addOrderBy(OrderBy) - Method in class mdbtools.dbengine.sql.Select
-
- addPicture(byte[], int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
Adds a picture to the workbook.
- addPlane(Plane) - Method in class ome.xml.model.Pixels
-
- addPlate(Plate) - Method in class ome.xml.model.OME
-
- addPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Plate
-
- addPossible(String) - Method in class loci.plugins.prefs.StringOption
-
Adds a possible value to the list.
- addProject(Project) - Method in class ome.xml.model.OME
-
- addProp(HashMap<String, String>, String, String, HashMap<String, String>) - Method in class loci.plugins.config.ConfigWindow
-
- addProp(int, EscherPropertyMetaData) - Static method in class loci.poi.ddf.EscherProperties
-
- addProperty(Property) - Method in class loci.poi.poifs.property.PropertyTable
-
Add a property to the list of properties we manage
- AddPtg - Class in loci.poi.hssf.record.formula
-
Addition operator PTG the "+" binomial operator.
- AddPtg() - Constructor for class loci.poi.hssf.record.formula.AddPtg
-
Creates new AddPtg
- AddPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AddPtg
-
- addPtyFiles() - Method in class loci.formats.in.FV1000Reader
-
- addReagent(Reagent) - Method in class ome.xml.model.Screen
-
- addReference(OMEModelObject, Reference) - Method in interface ome.xml.model.OMEModel
-
- addReference(OMEModelObject, Reference) - Method in class ome.xml.model.OMEModelImpl
-
- addREFRecord(ExternSheetSubRecord) - Method in class loci.poi.hssf.record.ExternSheetRecord
-
adds REF struct (ExternSheetSubRecord)
- addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- addROI(ROI) - Method in class ome.xml.model.OME
-
- addRow(RowRecord) - Method in class loci.poi.hssf.model.Sheet
-
Adds a row record to the sheet
- addRow(HSSFRow, boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
add a row to the sheet
- addRow(Object[]) - Method in class mdbtools.dbengine.MemoryData
-
Add a row of data
- addScreen(Screen) - Method in class ome.xml.model.OME
-
- addScrollBars(Container) - Static method in class loci.plugins.util.WindowTools
-
Adds AWT scroll bars to the given container.
- addSection(Section) - Method in class loci.poi.hpsf.MutablePropertySet
-
Adds a section to this property set.
- addSection(Section) - Method in class loci.poi.hpsf.SpecialPropertySet
-
- addSeriesMeta(String, Object) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, boolean) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, byte) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, short) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, int) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, long) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, float) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, double) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, char) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMetaList(String, Object) - Method in class loci.formats.FormatReader
-
Add the given key/value pair to the current series metadata hashtable.
- addShape(Shape) - Method in class ome.xml.model.Union
-
- addSheetIndexToExternSheet(short) - Method in class loci.poi.hssf.model.Workbook
-
- addSheetReference(String, int) - Method in class loci.poi.hssf.util.SheetReferences
-
- addShortOrLongField(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- addSSTString(UnicodeString) - Method in class loci.poi.hssf.model.Workbook
-
Adds a string to the SST table and returns its index (if its a duplicate
just returns its index and update the counts) ASSUMES compressed unicode
(meaning 8bit)
- addSSTString(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
Deprecated.
Do not call this method from your applications. Use the methods
available in the HSSFRow to add string HSSFCells
- addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.AbstractShape
-
Add standard properties to the opt record.
- addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.CommentShape
-
Sets standard escher options for a comment.
- addStatusListener(StatusListener) - Method in interface loci.common.StatusReporter
-
- addStatusListener(StatusListener) - Method in class loci.plugins.in.ImagePlusReader
-
- addStatusListener(StatusListener) - Method in class loci.plugins.in.ImportProcess
-
- addString(UnicodeString) - Method in class loci.poi.hssf.record.SSTRecord
-
Add a string.
- addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
Add a new string to the string table.
- addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
Add a new string to the string table.
- addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
Add a new string to the string table.
- addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
Add a new string to the string table.
- addSubRecord(int, Object) - Method in class loci.poi.hssf.record.ObjRecord
-
- addSubRecord(Object) - Method in class loci.poi.hssf.record.ObjRecord
-
- addTable(Object) - Method in class mdbtools.dbengine.sql.Select
-
- addTagAnnotation(TagAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Adds an element to the group of
TIFFTagSets of which this
directory is aware.
- addTermAnnotation(TermAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addTiffData(TiffData) - Method in class ome.xml.model.Pixels
-
- addTIFFField(TIFFField) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Adds a TIFF field to the directory.
- addTimestampAnnotation(TimestampAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addToAll(int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
-
- addToHashtable() - Method in class loci.formats.in.ZeissLSMReader.SubBlock
-
- addToSSTIfRequired() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
- addToStringTable(IntMapper, UnicodeString) - Static method in class loci.poi.hssf.record.SSTDeserializer
-
- addUsedFile(String, String) - Method in class loci.formats.in.PerkinElmerReader
-
Add the given file to the used files list.
- addUserCommentMeta(Element, int) - Method in class loci.formats.in.LIFReader
-
- addValueName(int, String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Adds a mnemonic name for a particular value that this tag's
data may take on.
- addValueRecord(int, CellValueRecordInterface) - Method in class loci.poi.hssf.model.Sheet
-
Adds a value record to the sheet's contained binary records
(i.e.
- addWell(Well) - Method in class ome.xml.model.Plate
-
- addWellSample(WellSample) - Method in class ome.xml.model.Well
-
- addXMLAnnotation(XMLAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addXYZPoints(IIOMetadataNode, String, double, double, double) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- adjust - Variable in class loci.formats.in.SlidebookReader
-
- adjustBitDepths - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- adjustEndianness - Variable in class loci.formats.in.GatanReader
-
- adjustForWhiteBalance(short, int) - Method in class loci.formats.in.DNGReader
-
- adjustForWhiteBalance(short, int) - Method in class loci.formats.in.NikonReader
-
- adjustmentValueChanged(AdjustmentEvent) - Method in class loci.plugins.util.DataBrowser
-
- adjustWellDimensions() - Method in class loci.formats.in.ScanrReader
-
- advanceBlock() - Method in class loci.formats.in.APNGReader.PNGInputStream
-
- AE - Static variable in class loci.formats.in.DicomReader
-
- AffineTransform - Class in ome.xml.model
-
- AffineTransform() - Constructor for class ome.xml.model.AffineTransform
-
Default constructor.
- AffineTransform(Element, OMEModel) - Constructor for class ome.xml.model.AffineTransform
-
Constructs AffineTransform recursively from an XML DOM tree.
- AffineTransform(AffineTransform) - Constructor for class ome.xml.model.AffineTransform
-
Copy constructor.
- AFIReader - Class in loci.formats.in
-
AFIReader is the file format reader for Aperio AFI files.
- AFIReader() - Constructor for class loci.formats.in.AFIReader
-
Constructs a new AFI reader.
- AFIReader.AFIHandler - Class in loci.formats.in
-
- AFIReader.AFIHandler() - Constructor for class loci.formats.in.AFIReader.AFIHandler
-
- afterRecordSerialize(int, short, int, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener
-
Fired after a record has been serialized.
- afterRecordSerialize(int, short, int, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener
-
- ag - Variable in class loci.formats.FileStitcher.ExternalSeries
-
- Aggregate - Interface in mdbtools.dbengine.functions
-
- aggregateDrawingRecords(DrawingManager2) - Method in class loci.poi.hssf.model.Sheet
-
- AggregateMetadata - Class in ome.xml.meta
-
A metadata store which delegates the actual storage to one or more sub
metadata stores.
- AggregateMetadata(List<BaseMetadata>) - Constructor for class ome.xml.meta.AggregateMetadata
-
Creates a new instance.
- aggregateQuery(Data) - Method in class mdbtools.dbengine.SelectEngine
-
execute an aggregate query
- AggregateQuery - Class in mdbtools.dbengine.tasks
-
resolve the columns, num rows not the same
- AggregateQuery(Task, Select, int[]) - Constructor for class mdbtools.dbengine.tasks.AggregateQuery
-
- AHZ - Static variable in class ome.units.UNITS
-
- AIMReader - Class in loci.formats.in
-
AIMReader is the file format reader for .aim files.
- AIMReader() - Constructor for class loci.formats.in.AIMReader
-
Constructs a new AIM reader.
- airPressure - Variable in class loci.formats.in.ZeissCZIReader
-
- airPressure - Variable in class ome.xml.model.ImagingEnvironment
-
- AISF - Static variable in class loci.formats.in.VolocityClippingReader
-
- AL3D_MAGIC_STRING - Static variable in class loci.formats.in.AliconaReader
-
- AliconaReader - Class in loci.formats.in
-
AliconaReader is the file format reader for Alicona AL3D files.
- AliconaReader() - Constructor for class loci.formats.in.AliconaReader
-
Constructs a new Alicona reader.
- ALIGN_CENTER - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
center horizontal alignment
- ALIGN_CENTER_SELECTION - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
center-selection? horizontal alignment
- ALIGN_FILL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
fill? horizontal alignment
- ALIGN_GENERAL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
general (normal) horizontal alignment
- ALIGN_JUSTIFY - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
justified horizontal alignment
- ALIGN_LEFT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
left-justified horizontal alignment
- ALIGN_RIGHT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
right-justified horizontal alignment
- ALIGNMENT - Static variable in class loci.formats.in.ZeissCZIReader
-
- alignROI - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
By specifying this parameter, the ROI mask will be limited to
covering only entire code-blocks.
- aLine - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- all_data - Variable in class loci.poi.hssf.record.FormulaRecord
-
- ALL_DOMAINS - Static variable in class loci.formats.FormatTools
-
List of all supported domains.
- ALL_TYPES - Static variable in class loci.formats.gui.GUITools
-
String to use for "all types" combination filter.
- allBlockLengths - Variable in class loci.formats.in.SDTInfo
-
- allBlockOffsets - Variable in class loci.formats.in.SDTInfo
-
- allFiles - Variable in class loci.formats.in.BrukerReader
-
- allFiles - Variable in class loci.formats.in.PerkinElmerReader
-
List of all files to open
- allFiles - Variable in class loci.formats.in.SPCReader
-
List of all files to open
- allocate(int...) - Static method in class loci.common.DataTools
-
Allocates a 1-dimensional byte array matching the product of the given
sizes.
- allocate(long, int) - Method in class loci.common.NIOByteBufferProvider
-
Allocates or maps the desired file data into memory.
- allocateDirect(long, int) - Method in class loci.common.NIOByteBufferProvider
-
Allocates memory and copies the desired file data into it.
- allocatedSize - Variable in class loci.formats.in.ZeissCZIReader.Segment
-
- allocateMappedByteBuffer(long, int) - Method in class loci.common.NIOByteBufferProvider
-
Memory maps the desired file data into memory.
- allocateRate() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Allocates output bit-rate for each tile in parsing mode: The allocator
simulates the truncation of a virtual layer-resolution progressive
codestream.
- allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager
-
Allocates new shape id for the new drawing group id.
- allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager2
-
Allocates new shape id for the new drawing group id.
- allocateSpace(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter
-
Allocate space for a block of indices
- allowedTagsByName - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
-
- allowedTagsByNumber - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
-
- allowedTagSets - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
- allowOpen - Variable in class loci.formats.gui.FormatFileFilter
-
Whether it is ok to open a file to determine its type.
- allowOpen - Variable in class loci.formats.ImageReader
-
- allowShow - Variable in class loci.plugins.util.DataBrowser
-
- ALPHA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
The value of the first lifting step coefficient
- ALPHA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
The value of the first lifting step coefficient
- ALPHABET_LENGTH - Static variable in class loci.formats.ResourceNamer
-
- alphabeticIndexCount(String) - Static method in class loci.formats.ResourceNamer
-
- alphaChannel - Variable in enum ome.jxr.ifd.PixelFormat
-
Deprecated.
- alphaImagePlaneFlag - Variable in class ome.jxr.parser.DatastreamParser
-
Deprecated.
- alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- ALPHANUM - Static variable in class loci.tests.IOTester
-
- alphaShort - Variable in class loci.formats.gui.Index16ColorModel
-
Lookup tables.
- alreadyChecked() - Method in class loci.formats.UpgradeChecker
-
Return true if an upgrade check has already been performed in this
JVM session.
- ALT_BARS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- ALT_BARS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Wide dots
- alt_pg_buf - Variable in class mdbtools.libmdb.MdbHandle
-
- ALT_ZVI - Static variable in class loci.common.DateTools
-
- ALT_ZVI_EPOCH - Static variable in class loci.common.DateTools
-
- altCodec - Variable in class loci.formats.in.NativeQTReader
-
Some movies use two video codecs -- this is the second codec.
- ALTERNATE_MD5 - Static variable in class loci.tests.testng.Configuration
-
- alternateCenter - Variable in class loci.formats.in.LeicaHandler
-
- alternateCenter - Variable in class loci.formats.in.LIFReader
-
- alternateexpression - Static variable in class loci.poi.hssf.record.WSBoolRecord
-
- alternateformula - Static variable in class loci.poi.hssf.record.WSBoolRecord
-
- ALTITUDE_REF_SEA_LEVEL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSAltitudeRef" tag.
- ALTITUDE_REF_SEA_LEVEL_REFERENCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSAltitudeRef" tag.
- altPlanes - Variable in class loci.formats.in.NativeQTReader
-
Number of frames that use the alternate codec.
- alwaysCalc - Variable in class loci.poi.hssf.record.FormulaRecord
-
- AM - Static variable in class ome.units.UNITS
-
- AmiraParameters - Class in loci.formats.tools
-
AmiraParameters handles parsing and writing of AmiraMesh headers.
- AmiraParameters(String) - Constructor for class loci.formats.tools.AmiraParameters
-
- AmiraParameters(RandomAccessInputStream) - Constructor for class loci.formats.tools.AmiraParameters
-
- AmiraReader - Class in loci.formats.in
-
This is a file format reader for AmiraMesh data.
- AmiraReader() - Constructor for class loci.formats.in.AmiraReader
-
- AmiraReader.ASCII - Class in loci.formats.in
-
This class provides a not-quite-efficient, but simple reader for
planes stored in ASCII-encoded numbers.
- AmiraReader.ASCII(int, int) - Constructor for class loci.formats.in.AmiraReader.ASCII
-
- AmiraReader.HxRLE - Class in loci.formats.in
-
This is the reader for RLE-compressed AmiraMeshes.
- AmiraReader.HxRLE(int, long) - Constructor for class loci.formats.in.AmiraReader.HxRLE
-
- AmiraReader.HxZip - Class in loci.formats.in
-
This is the reader for GZip-compressed AmiraMeshes.
- AmiraReader.HxZip(long) - Constructor for class loci.formats.in.AmiraReader.HxZip
-
- AmiraReader.PlaneReader - Interface in loci.formats.in
-
This is the common interface for all formats, compressed or not.
- amplificationGain - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel
-
- amplificationGain - Variable in class ome.xml.model.Detector
-
- analysisFiles - Variable in class loci.formats.in.MIASReader
-
- analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Filters the input signal by this analysis filter, decomposing
it in a low-pass and a high-pass signal.
- analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
A specific version of the analyze_hpf() method that works on int
data.
- analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
The general version of the analyze_hpf() method, it just calls the
specialized version.
- analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
An implementation of the analyze_hpf() method that works on int
data, for the forward 9x7 wavelet transform using the
lifting scheme.
- analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
A specific version of the analyze_hpf() method that works on int
data.
- analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
The general version of the analyze_hpf() method, it just calls the
specialized version.
- analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
An implementation of the analyze_hpf() method that works on int data,
for the forward 5x3 wavelet transform using the lifting scheme.
- analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Filters the input signal by this analysis filter, decomposing
it in a low-pass and a high-pass signal.
- analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
A specific version of the analyze_lpf() method that works on int
data.
- analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
The general version of the analyze_lpf() method, it just calls the
specialized version.
- analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
An implementation of the analyze_lpf() method that works on int
data, for the forward 9x7 wavelet transform using the
lifting scheme.
- analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
A specific version of the analyze_lpf() method that works on int
data.
- analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
The general version of the analyze_lpf() method, it just calls the
specialized version.
- analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
An implementation of the analyze_lpf() method that works on int data,
for the forward 5x3 wavelet transform using the lifting scheme.
- AnalyzeReader - Class in loci.formats.in
-
AnalyzeReader is the file format reader for Analyze 7.5 files.
- AnalyzeReader() - Constructor for class loci.formats.in.AnalyzeReader
-
Constructs a new Analyze reader.
- anbytes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Actual number of read bytes
- anchor - Variable in class loci.poi.hssf.usermodel.HSSFShape
-
- ANCHOR_ID_CHART_TITLE - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- ANCHOR_ID_SERIES_OR_POINT - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- ANCHOR_ID_X_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- ANCHOR_ID_Y_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- ANCHOR_ID_Z_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- anchorType - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor
-
- and(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- AND - Static variable in class mdbtools.dbengine.sql.Condition
-
- ANDOR_MAGIC_STRING - Static variable in class loci.formats.in.FluoviewReader
-
- ANDOR_SHIFT_SPEED - Static variable in class loci.formats.in.CellSensReader
-
- andTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- andTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- anGainExp - Variable in class jj2000.j2k.wavelet.Subband
-
The base 2 exponent of the analysis gain of the subband.
- ANGLE - Static variable in class loci.formats.in.ZeissLSMReader
-
- angle - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension
-
- Angle - Class in ome.units.quantity
-
Angle quantity.
- Angle(Number, Unit<Angle>) - Constructor for class ome.units.quantity.Angle
-
Create an Angle.
- angles - Variable in class loci.formats.in.ZeissCZIReader
-
- ANGSTROM - Static variable in class ome.units.UNITS
-
- anim - Variable in class loci.formats.gui.ImageViewer
-
- anim - Variable in class loci.plugins.util.DataBrowser
-
- animate - Variable in class loci.plugins.util.DataBrowser
-
- ANIMATION_KEY - Static variable in class loci.formats.gui.ImageViewer
-
- ANN_BOOLEAN_VALUE - Static variable in class loci.formats.in.FakeReader
-
- ANN_COMMENT_VALUE - Static variable in class loci.formats.in.FakeReader
-
- ANN_DOUBLE_VALUE - Static variable in class loci.formats.in.FakeReader
-
- ANN_LONG_VALUE - Static variable in class loci.formats.in.FakeReader
-
- ANN_TAG_VALUE - Static variable in class loci.formats.in.FakeReader
-
- ANN_TERM_VALUE - Static variable in class loci.formats.in.FakeReader
-
- ANN_TIME_VALUE - Static variable in class loci.formats.in.FakeReader
-
- ANN_XML_VALUE_END - Static variable in class loci.formats.in.FakeReader
-
- ANN_XML_VALUE_START - Static variable in class loci.formats.in.FakeReader
-
- annBool - Variable in class loci.formats.in.FakeReader
-
- annComment - Variable in class loci.formats.in.FakeReader
-
- annDouble - Variable in class loci.formats.in.FakeReader
-
- annLong - Variable in class loci.formats.in.FakeReader
-
- annMap - Variable in class loci.formats.in.FakeReader
-
- Annotation - Class in ome.xml.model
-
- Annotation() - Constructor for class ome.xml.model.Annotation
-
Default constructor.
- Annotation(Element, OMEModel) - Constructor for class ome.xml.model.Annotation
-
Constructs Annotation recursively from an XML DOM tree.
- Annotation(Annotation) - Constructor for class ome.xml.model.Annotation
-
Copy constructor.
- ANNOTATION_NAMESPACE - Static variable in class loci.formats.in.FakeReader
-
- ANNOTATION_PREFIX - Static variable in class loci.formats.in.FakeReader
-
- annotationBoolCount - Variable in class loci.formats.in.FakeReader
-
- annotationCommentCount - Variable in class loci.formats.in.FakeReader
-
- annotationCount - Variable in class loci.formats.in.FakeReader
-
- annotationDoubleCount - Variable in class loci.formats.in.FakeReader
-
- annotationLinks - Variable in class ome.xml.model.Annotation
-
- annotationLinks - Variable in class ome.xml.model.Channel
-
- annotationLinks - Variable in class ome.xml.model.Dataset
-
- annotationLinks - Variable in class ome.xml.model.Detector
-
- annotationLinks - Variable in class ome.xml.model.Dichroic
-
- annotationLinks - Variable in class ome.xml.model.Experimenter
-
- annotationLinks - Variable in class ome.xml.model.ExperimenterGroup
-
- annotationLinks - Variable in class ome.xml.model.Filter
-
- annotationLinks - Variable in class ome.xml.model.Folder
-
- annotationLinks - Variable in class ome.xml.model.Image
-
- annotationLinks - Variable in class ome.xml.model.Instrument
-
- annotationLinks - Variable in class ome.xml.model.LightPath
-
- annotationLinks - Variable in class ome.xml.model.LightSource
-
- annotationLinks - Variable in class ome.xml.model.Objective
-
- annotationLinks - Variable in class ome.xml.model.Plane
-
- annotationLinks - Variable in class ome.xml.model.Plate
-
- annotationLinks - Variable in class ome.xml.model.PlateAcquisition
-
- annotationLinks - Variable in class ome.xml.model.Project
-
- annotationLinks - Variable in class ome.xml.model.Reagent
-
- annotationLinks - Variable in class ome.xml.model.ROI
-
- annotationLinks - Variable in class ome.xml.model.Screen
-
- annotationLinks - Variable in class ome.xml.model.Shape
-
- annotationLinks - Variable in class ome.xml.model.Well
-
- annotationLongCount - Variable in class loci.formats.in.FakeReader
-
- annotationMapCount - Variable in class loci.formats.in.FakeReader
-
- AnnotationRef - Class in ome.xml.model
-
- AnnotationRef() - Constructor for class ome.xml.model.AnnotationRef
-
Default constructor.
- AnnotationRef(Element, OMEModel) - Constructor for class ome.xml.model.AnnotationRef
-
Constructs AnnotationRef recursively from an XML DOM tree.
- AnnotationRef(AnnotationRef) - Constructor for class ome.xml.model.AnnotationRef
-
Copy constructor.
- ANNOTATIONS - Static variable in class ome.specification.XMLMockObjects
-
The supported types of annotations.
- annotationTagCount - Variable in class loci.formats.in.FakeReader
-
- annotationTermCount - Variable in class loci.formats.in.FakeReader
-
- annotationTimeCount - Variable in class loci.formats.in.FakeReader
-
- annotationXmlCount - Variable in class loci.formats.in.FakeReader
-
- annotator - Variable in class ome.xml.model.Annotation
-
- annTag - Variable in class loci.formats.in.FakeReader
-
- annTerm - Variable in class loci.formats.in.FakeReader
-
- annTime - Variable in class loci.formats.in.FakeReader
-
- annXml - Variable in class loci.formats.in.FakeReader
-
- ANO_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- ANSI_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont
-
ANSI character set
- AnWTFilter - Class in jj2000.j2k.wavelet.analysis
-
This abstract class defines the methods of all analysis wavelet
filters.
- AnWTFilter() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilter
-
- AnWTFilterFloat - Class in jj2000.j2k.wavelet.analysis
-
This extends the analysis wavelet filter general definitions of
AnWTFilter by adding methods that work for float data
specifically.
- AnWTFilterFloat() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
- AnWTFilterFloatLift9x7 - Class in jj2000.j2k.wavelet.analysis
-
This class inherits from the analysis wavelet filter definition
for int data.
- AnWTFilterFloatLift9x7() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
- AnWTFilterInt - Class in jj2000.j2k.wavelet.analysis
-
This extends the analysis wavelet filter general definitions of
AnWTFilter by adding methods that work for int data
specifically.
- AnWTFilterInt() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
- AnWTFilterIntLift5x3 - Class in jj2000.j2k.wavelet.analysis
-
This class inherits from the analysis wavelet filter definition for int
data.
- AnWTFilterIntLift5x3() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
- AnWTFilterSpec - Class in jj2000.j2k.wavelet.analysis
-
This class extends ModuleSpec class for analysis filters specification
holding purpose.
- AnWTFilterSpec(int, int, byte, QuantTypeSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
-
Constructs a new 'AnWTFilterSpec' for the specified number of
components and tiles.
- APA - Static variable in class ome.units.UNITS
-
- APERIO_IMAGE_DESCRIPTION_PREFIX - Static variable in class loci.formats.in.SVSReader
-
TIFF image description prefix for Aperio SVS files.
- APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD
-
- APLReader - Class in loci.formats.in
-
APLReader is the file format reader for Olympus APL files.
- APLReader() - Constructor for class loci.formats.in.APLReader
-
Constructs a new APL reader.
- APNGReader - Class in loci.formats.in
-
APNGReader is the file format reader for
Animated Portable Network Graphics (APNG) images.
- APNGReader() - Constructor for class loci.formats.in.APNGReader
-
Constructs a new APNGReader.
- APNGReader.PNGBlock - Class in loci.formats.in
-
- APNGReader.PNGBlock() - Constructor for class loci.formats.in.APNGReader.PNGBlock
-
- APNGReader.PNGInputStream - Class in loci.formats.in
-
InputStream implementation that stitches together IDAT blocks into
a seamless zlib stream.
- APNGReader.PNGInputStream(String) - Constructor for class loci.formats.in.APNGReader.PNGInputStream
-
- APNGReader.PNGInputStream(String, int) - Constructor for class loci.formats.in.APNGReader.PNGInputStream
-
- APNGWriter - Class in loci.formats.out
-
APNGWriter is the file format writer for PNG and APNG files.
- APNGWriter() - Constructor for class loci.formats.out.APNGWriter
-
- append(ClassList<T>) - Method in class loci.formats.ClassList
-
Appends a class list which must be assignable to the base class
- append(List<Class<? extends T>>) - Method in class loci.formats.ClassList
-
Appends a list of classes which must be assignable to the base class
- append(ILoggingEvent) - Method in class loci.plugins.util.IJStatusEchoer
-
- appendChild(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- appendedCompressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
- appendServerMap(String, String) - Static method in class loci.formats.in.FlexReader
-
Add the path 'realName' to the mapping for the server named 'alias'.
- applicationData - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- applicationIDs - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- applyCalibration(ImagePlus) - Method in class loci.plugins.in.Calibrator
-
Applies spatial calibrations to an image stack.
- applyColors(List<ImagePlus>) - Method in class loci.plugins.in.Colorizer
-
- applyColors(List<ImagePlus>) - Method in class loci.plugins.in.ImagePlusReader
-
- applyDisplayRanges(ImagePlus, int) - Method in class loci.plugins.in.Colorizer
-
- applyFont(int, int, short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Applies a font to the specified characters of a string.
- applyFont(int, int, HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Applies a font to the specified characters of a string.
- applyFont(HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Sets the font of the entire string.
- applyFont(short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Applies the specified font to the entire string.
- applyMethodStack(List<RecordedImageProcessor.MethodEntry>) - Method in class loci.plugins.util.RecordedImageProcessor
-
- applystyles - Static variable in class loci.poi.hssf.record.WSBoolRecord
-
- applyTable(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- approximation - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
- arabic - Variable in class loci.poi.hssf.record.WindowTwoRecord
-
- arate - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Actual decoding rate in bpp
- ArbROIMaskGenerator - Class in jj2000.j2k.roi.encoder
-
This class generates the ROI bit-mask when, at least, one ROI is not
rectangular.
- ArbROIMaskGenerator(ROI[], int, Quantizer) - Constructor for class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
-
The constructor of the arbitrary mask generator
- arbShape - Variable in class jj2000.j2k.roi.encoder.ROI
-
Where or not the ROI shape is arbitrary
- Arc - Class in ome.xml.model
-
- Arc() - Constructor for class ome.xml.model.Arc
-
Default constructor.
- Arc(Element, OMEModel) - Constructor for class ome.xml.model.Arc
-
Constructs Arc recursively from an XML DOM tree.
- Arc(Arc) - Constructor for class ome.xml.model.Arc
-
Copy constructor.
- ARC_TYPE - Static variable in class ome.specification.XMLMockObjects
-
The default type of an arc.
- ARCHIVE - Static variable in class loci.formats.in.FlexReader
-
- ArcType - Enum in ome.xml.model.enums
-
- ArcType(String) - Constructor for enum ome.xml.model.enums.ArcType
-
- ArcTypeEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for ArcType.
- ArcTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ArcTypeEnumHandler
-
- Area3DPtg - Class in loci.poi.hssf.record.formula
-
Title: Area 3D Ptg - 3D referecnce (Sheet + Area)
- Area3DPtg() - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
-
Creates new AreaPtg
- Area3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
-
- Area3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
-
- AreaAPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
-
- AreaAPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
-
- AreaAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
-
- AreaErrPtg - Class in loci.poi.hssf.record.formula
-
AreaErr - handles deleted cell area references.
- AreaErrPtg() - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg
-
- AreaErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg
-
- AreaFormatRecord - Class in loci.poi.hssf.record
-
The area format record is used to define the colours and patterns for an area.
- AreaFormatRecord() - Constructor for class loci.poi.hssf.record.AreaFormatRecord
-
- AreaFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaFormatRecord
-
Constructs a AreaFormat record and sets its fields appropriately.
- AreaNAPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaNAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg
-
- AreaNAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg
-
- AreaNPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaNPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNPtg
-
- AreaNPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNPtg
-
- AreaNVPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaNVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg
-
- AreaNVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg
-
- AreaPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaPtg() - Constructor for class loci.poi.hssf.record.formula.AreaPtg
-
- AreaPtg(String) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
-
- AreaPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
-
- AreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
-
- AreaRecord - Class in loci.poi.hssf.record
-
The area record is used to define a area chart.
- AreaRecord() - Constructor for class loci.poi.hssf.record.AreaRecord
-
- AreaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaRecord
-
Constructs a Area record and sets its fields appropriately.
- AreaReference - Class in loci.poi.hssf.util
-
- AreaReference(String) - Constructor for class loci.poi.hssf.util.AreaReference
-
Create an area ref from a string representation
- areas - Variable in class loci.formats.in.CellVoyagerReader.WellInfo
-
- AreaVPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
-
- AreaVPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
-
- AreaVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
-
- areIntArraysEqual(int[], int[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- areSampleSizesEqual(SampleModel) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Returns whether all samples have the same number of bits.
- ARFReader - Class in loci.formats.in
-
ARFReader is the file format reader for Axon Raw Format (ARF) files,
produced by INDEC BioSystems's
Imaging Workbench
software.
- ARFReader() - Constructor for class loci.formats.in.ARFReader
-
Constructs a new ARF reader.
- arg - Variable in class loci.plugins.LociExporter
-
Argument passed to setup method.
- arg - Variable in class loci.plugins.Slicer
-
Plugin options.
- args - Static variable in class loci.plugins.shortcut.ShortcutPanel
-
Details for installed plugins.
- args - Variable in class loci.plugins.util.RecordedImageProcessor.MethodEntry
-
- argument - Variable in class mdbtools.dbengine.sql.FunctionDef
-
- Arguments() - Method in class loci.poi.hssf.model.FormulaParser
-
get arguments to a function
- ARRAY - Static variable in class loci.formats.in.GatanReader
-
Data types.
- array_to_string(int[], int) - Static method in class mdbtools.libmdb.Money
-
- arraycopy(byte[], int, byte[], int, int) - Static method in class loci.poi.util.ArrayUtil
-
This is really a debugging version of System.arraycopy().
- arrayMoveWithin(Object[], int, int, int) - Static method in class loci.poi.util.ArrayUtil
-
Moves a number of entries in an array to another point in the array,
shifting those inbetween as required.
- ArrayPtg - Class in loci.poi.hssf.record.formula
-
ArrayPtg - handles arrays
The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only
includes the Ptg sid and the reserved bytes.
- ArrayPtg() - Constructor for class loci.poi.hssf.record.formula.ArrayPtg
-
- ArrayPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtg
-
- ArrayPtgA - Class in loci.poi.hssf.record.formula
-
ArrayPtgA - handles arrays
- ArrayPtgA() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA
-
- ArrayPtgA(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA
-
- ArrayPtgV - Class in loci.poi.hssf.record.formula
-
ArrayPtg - handles arrays
The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only
includes the Ptg sid and the reserved bytes.
- ArrayPtgV() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV
-
- ArrayPtgV(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV
-
- arrayToString(Array) - Method in class loci.formats.services.NetCDFServiceImpl
-
- ArrayUtil - Class in jj2000.j2k.util
-
This class contains a colleaction of utility static methods for arrays.
- ArrayUtil() - Constructor for class jj2000.j2k.util.ArrayUtil
-
- ArrayUtil - Class in loci.poi.util
-
Utility classes for dealing with arrays.
- ArrayUtil() - Constructor for class loci.poi.util.ArrayUtil
-
- ARROW - Static variable in class loci.formats.in.FV1000Reader
-
- ARROW - Static variable in class loci.formats.in.LeicaHandler.ROI
-
- ARROW - Static variable in class loci.formats.in.LIFReader.ROI
-
- ARTIST - Static variable in class loci.formats.tiff.IFD
-
- AS - Static variable in class loci.formats.in.DicomReader
-
- AS - Static variable in class ome.units.UNITS
-
- ascending - Variable in class mdbtools.dbengine.sql.OrderBy
-
- ascii - Variable in class loci.formats.in.AmiraReader
-
- ascii - Variable in class loci.formats.tools.AmiraParameters
-
- AsciiImage - Class in loci.formats.tools
-
A utility class for outputting a BufferedImage as ASCII text.
- AsciiImage(BufferedImage) - Constructor for class loci.formats.tools.AsciiImage
-
- asDateTime(DateTimeZone) - Method in class ome.xml.model.primitives.Timestamp
-
Returns the timestamp as a Joda DateTime type.
- asInstant() - Method in class ome.xml.model.primitives.Timestamp
-
Returns the timestamp as a Joda DateTime type.
- asMap() - Method in class loci.formats.in.DeltavisionReader.DVExtHdrFields
-
- asRetrieve(MetadataStore) - Method in interface loci.formats.services.OMEXMLService
-
- asRetrieve(MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- assertBlock(int, int, int, int, int) - Method in class loci.tests.testng.OpenBytesPerformanceTest
-
- assertCompression(TiffCompression, boolean) - Method in class loci.tests.testng.CompressDecompressTest
-
Tests the writing of the tiles.
- assertId(String, boolean, int) - Static method in class loci.formats.FormatTools
-
Asserts that the current file is either null, or not, according to the
given flag.
- assertRows(int) - Method in class loci.tests.testng.OpenBytesPerformanceTest
-
- assertSeries(int) - Method in class loci.tests.testng.OpenBytesPerformanceTest
-
- assertStep(ImportStep) - Method in class loci.plugins.in.ImportProcess
-
- assertTiles(String, String, int, int, boolean) - Method in class loci.tests.testng.TiffWriterTest
-
Tests the writing of the tiles.
- assertUnevenTiles(String, String, int, int, boolean) - Method in class loci.tests.testng.TiffWriterTest
-
Tests the writing of the tiles.
- assignL2Norm(float) - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Assigns the given L2-norm to the first leaf that does not have
an L2-norm value yet (i.e.
- assignPlaneIndices() - Method in class loci.formats.in.ZeissCZIReader
-
- assignValues(double[]) - Method in class loci.formats.in.TextReader
-
Assigns values from the given row into the data array.
- associations - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
- associations - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
- assoicateShapeToObjRecord(EscherRecord, Record) - Method in class loci.poi.hssf.record.EscherAggregate
-
Associates an escher record to an OBJ record or a TXO record.
- asStore(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService
-
- asStore(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- ASTRONOMICALUNIT - Static variable in class ome.units.UNITS
-
- ASTRONOMY_DOMAIN - Static variable in class loci.formats.FormatTools
-
Identifies the astronomy domain.
- asXMLElement(Document) - Method in class ome.xml.model.AbstractOMEModelObject
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.AbstractOMEModelObject
-
Takes the entire object hierarchy and produced an XML DOM tree taking
into account class hierarchy.
- asXMLElement(Document) - Method in class ome.xml.model.AffineTransform
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.AffineTransform
-
- asXMLElement(Document) - Method in class ome.xml.model.Annotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Annotation
-
- asXMLElement(Document) - Method in class ome.xml.model.AnnotationRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.AnnotationRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Arc
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Arc
-
- asXMLElement(Document) - Method in class ome.xml.model.BasicAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BasicAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.BinaryFile
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryFile
-
- asXMLElement(Document) - Method in class ome.xml.model.BinaryOnly
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryOnly
-
- asXMLElement(Document) - Method in class ome.xml.model.BinData
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BinData
-
- asXMLElement(Document) - Method in class ome.xml.model.BooleanAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BooleanAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Channel
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Channel
-
- asXMLElement(Document) - Method in class ome.xml.model.ChannelRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ChannelRef
-
- asXMLElement(Document) - Method in class ome.xml.model.CommentAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.CommentAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Dataset
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Dataset
-
- asXMLElement(Document) - Method in class ome.xml.model.DatasetRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.DatasetRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Detector
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Detector
-
- asXMLElement(Document) - Method in class ome.xml.model.DetectorSettings
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.DetectorSettings
-
- asXMLElement(Document) - Method in class ome.xml.model.Dichroic
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Dichroic
-
- asXMLElement(Document) - Method in class ome.xml.model.DichroicRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.DichroicRef
-
- asXMLElement(Document) - Method in class ome.xml.model.DoubleAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.DoubleAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Ellipse
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Ellipse
-
- asXMLElement(Document) - Method in class ome.xml.model.EmissionFilterRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.EmissionFilterRef
-
- asXMLElement(Document) - Method in class ome.xml.model.ExcitationFilterRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExcitationFilterRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Experiment
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Experiment
-
- asXMLElement(Document) - Method in class ome.xml.model.Experimenter
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Experimenter
-
- asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroup
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroup
-
- asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroupRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroupRef
-
- asXMLElement(Document) - Method in class ome.xml.model.ExperimenterRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterRef
-
- asXMLElement(Document) - Method in class ome.xml.model.ExperimentRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimentRef
-
- asXMLElement(Document) - Method in class ome.xml.model.External
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.External
-
- asXMLElement(Document) - Method in class ome.xml.model.Filament
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Filament
-
- asXMLElement(Document) - Method in class ome.xml.model.FileAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.FileAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Filter
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Filter
-
- asXMLElement(Document) - Method in class ome.xml.model.FilterRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.FilterRef
-
- asXMLElement(Document) - Method in class ome.xml.model.FilterSet
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSet
-
- asXMLElement(Document) - Method in class ome.xml.model.FilterSetRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSetRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Folder
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Folder
-
- asXMLElement(Document) - Method in class ome.xml.model.FolderRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.FolderRef
-
- asXMLElement(Document) - Method in class ome.xml.model.GenericExcitationSource
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.GenericExcitationSource
-
- asXMLElement(Document) - Method in class ome.xml.model.Image
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Image
-
- asXMLElement(Document) - Method in class ome.xml.model.ImageRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ImageRef
-
- asXMLElement(Document) - Method in class ome.xml.model.ImagingEnvironment
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ImagingEnvironment
-
- asXMLElement(Document) - Method in class ome.xml.model.Instrument
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Instrument
-
- asXMLElement(Document) - Method in class ome.xml.model.InstrumentRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.InstrumentRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Label
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Label
-
- asXMLElement(Document) - Method in class ome.xml.model.Laser
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Laser
-
- asXMLElement(Document) - Method in class ome.xml.model.Leader
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Leader
-
- asXMLElement(Document) - Method in class ome.xml.model.LightEmittingDiode
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LightEmittingDiode
-
- asXMLElement(Document) - Method in class ome.xml.model.LightPath
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LightPath
-
- asXMLElement(Document) - Method in class ome.xml.model.LightSource
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LightSource
-
- asXMLElement(Document) - Method in class ome.xml.model.LightSourceSettings
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LightSourceSettings
-
- asXMLElement(Document) - Method in class ome.xml.model.Line
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Line
-
- asXMLElement(Document) - Method in class ome.xml.model.ListAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ListAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.LongAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LongAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.ManufacturerSpec
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ManufacturerSpec
-
- asXMLElement(Document) - Method in class ome.xml.model.MapAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.MapAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Mask
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Mask
-
- asXMLElement(Document) - Method in class ome.xml.model.MetadataOnly
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.MetadataOnly
-
- asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulation
-
- asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulationRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulationRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Microscope
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Microscope
-
- asXMLElement(Document) - Method in class ome.xml.model.NumericAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.NumericAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Objective
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Objective
-
- asXMLElement(Document) - Method in class ome.xml.model.ObjectiveSettings
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ObjectiveSettings
-
- asXMLElement(Document) - Method in class ome.xml.model.OME
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.OME
-
- asXMLElement(Document) - Method in interface ome.xml.model.OMEModelObject
-
Takes the entire object hierarchy and produces an XML DOM tree.
- asXMLElement(Document) - Method in class ome.xml.model.Pixels
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Pixels
-
- asXMLElement(Document) - Method in class ome.xml.model.Plane
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Plane
-
- asXMLElement(Document) - Method in class ome.xml.model.Plate
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Plate
-
- asXMLElement(Document) - Method in class ome.xml.model.PlateAcquisition
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.PlateAcquisition
-
- asXMLElement(Document) - Method in class ome.xml.model.PlateRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.PlateRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Point
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Point
-
- asXMLElement(Document) - Method in class ome.xml.model.Polygon
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Polygon
-
- asXMLElement(Document) - Method in class ome.xml.model.Polyline
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Polyline
-
- asXMLElement(Document) - Method in class ome.xml.model.Project
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Project
-
- asXMLElement(Document) - Method in class ome.xml.model.ProjectRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ProjectRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Pump
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Pump
-
- asXMLElement(Document) - Method in class ome.xml.model.Reagent
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Reagent
-
- asXMLElement(Document) - Method in class ome.xml.model.ReagentRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ReagentRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Rectangle
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Rectangle
-
- asXMLElement(Document) - Method in class ome.xml.model.Reference
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Reference
-
- asXMLElement(Document) - Method in class ome.xml.model.Rights
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Rights
-
- asXMLElement(Document) - Method in class ome.xml.model.ROI
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ROI
-
- asXMLElement(Document) - Method in class ome.xml.model.ROIRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ROIRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Screen
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Screen
-
- asXMLElement(Document) - Method in class ome.xml.model.Settings
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Settings
-
- asXMLElement(Document) - Method in class ome.xml.model.Shape
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Shape
-
- asXMLElement(Document) - Method in class ome.xml.model.StageLabel
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.StageLabel
-
- asXMLElement(Document) - Method in class ome.xml.model.StructuredAnnotations
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.StructuredAnnotations
-
- asXMLElement(Document) - Method in class ome.xml.model.TagAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TagAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.TermAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TermAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.TextAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TextAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.TiffData
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TiffData
-
- asXMLElement(Document) - Method in class ome.xml.model.TimestampAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TimestampAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.TransmittanceRange
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TransmittanceRange
-
- asXMLElement(Document) - Method in class ome.xml.model.TypeAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TypeAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Union
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Union
-
- asXMLElement(Document) - Method in class ome.xml.model.UUID
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.UUID
-
- asXMLElement(Document) - Method in class ome.xml.model.Well
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Well
-
- asXMLElement(Document) - Method in class ome.xml.model.WellSample
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.WellSample
-
- asXMLElement(Document) - Method in class ome.xml.model.WellSampleRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.WellSampleRef
-
- asXMLElement(Document) - Method in class ome.xml.model.XMLAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.XMLAnnotation
-
- AT - Static variable in class loci.formats.in.DicomReader
-
- atEOD() - Method in class loci.poi.poifs.filesystem.DocumentInputStream
-
- aTile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The raster for a destination tile
- ATM - Static variable in class ome.units.UNITS
-
- ATMOSPHERE - Static variable in class ome.units.UNITS
-
- attachCompanionFiles() - Method in class loci.formats.in.DicomReader
-
DICOM datasets produced by:
http://www.ct-imaging.de/index.php/en/ct-systeme-e/mikro-ct-e.html
contain a bunch of extra metadata and log files.
- attachListeners(List<TextField>, List<Panel>) - Method in class loci.plugins.in.ColorDialog
-
- attachment - Variable in class loci.formats.in.ZeissCZIReader.Attachment
-
- attachment - Variable in class loci.formats.in.ZeissCZIReader.Metadata
-
- attachmentData - Variable in class loci.formats.in.ZeissCZIReader.Attachment
-
- attachmentDirectoryPosition - Variable in class loci.formats.in.ZeissCZIReader.FileHeader
-
- attachmentSize - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- attenuation - Variable in class loci.formats.in.ZeissLSMReader.IlluminationChannel
-
- attenuation - Variable in class ome.xml.model.LightSourceSettings
-
- ATTO(Unit<T>) - Static method in class ome.units.UNITS
-
- ATTOHERTZ - Static variable in class ome.units.UNITS
-
- ATTOMETER - Static variable in class ome.units.UNITS
-
- ATTOMETRE - Static variable in class ome.units.UNITS
-
- ATTOPASCAL - Static variable in class ome.units.UNITS
-
- ATTOSECOND - Static variable in class ome.units.UNITS
-
- ATTOVOLT - Static variable in class ome.units.UNITS
-
- ATTOWATT - Static variable in class ome.units.UNITS
-
- attr(Element, String) - Method in class loci.formats.in.PrairieMetadata
-
Gets the attribute value with the given name, or null if not defined.
- ATTR_NAME - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
-
- ATTR_NAME_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer
-
- ATTR_NAME_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer
-
- ATTR_VALUE_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer
-
- ATTR_VALUE_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer
-
- attributeList - Variable in class loci.formats.services.NetCDFServiceImpl
-
- attributeNames - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo
-
- attrInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- AttrPtg - Class in loci.poi.hssf.record.formula
-
"Special Attributes"
This seems to be a Misc Stuff and Junk record.
- AttrPtg() - Constructor for class loci.poi.hssf.record.formula.AttrPtg
-
- AttrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AttrPtg
-
- authenticationCodes - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- author - Variable in class loci.poi.hssf.usermodel.HSSFComment
-
- auto - Variable in class loci.poi.hssf.record.LineFormatRecord
-
- autoBackground - Variable in class loci.poi.hssf.record.TextRecord
-
- autobreaks - Static variable in class loci.poi.hssf.record.WSBoolRecord
-
- autoColor - Variable in class loci.poi.hssf.record.TextRecord
-
- autoContinue - Variable in class loci.poi.hssf.record.RecordInputStream
-
- AUTOEXPOSURE - Static variable in class loci.formats.in.CellSensReader
-
- autofill - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
-
- autoGeneratedText - Variable in class loci.poi.hssf.record.TextRecord
-
- autoLabelDeleted - Variable in class loci.poi.hssf.record.TextRecord
-
- autoline - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
-
- automatic - Variable in class loci.poi.hssf.record.AreaFormatRecord
-
- AUTOMATIC - Static variable in class loci.poi.hssf.record.CalcModeRecord
-
automatically calculate formulas (1)
- AUTOMATIC_EXCEPT_TABLES - Static variable in class loci.poi.hssf.record.CalcModeRecord
-
automatically calculate formulas except for tables (-1)
- automaticCategoryCrossing - Variable in class loci.poi.hssf.record.ValueRangeRecord
-
- automaticMajor - Variable in class loci.poi.hssf.record.ValueRangeRecord
-
- automaticMaximum - Variable in class loci.poi.hssf.record.ValueRangeRecord
-
- automaticMinimum - Variable in class loci.poi.hssf.record.ValueRangeRecord
-
- automaticMinor - Variable in class loci.poi.hssf.record.ValueRangeRecord
-
- autoPlotArea - Variable in class loci.poi.hssf.record.SheetPropertiesRecord
-
- autoPosition - Variable in class loci.poi.hssf.record.FrameRecord
-
- autoPosition - Variable in class loci.poi.hssf.record.LegendRecord
-
- autorotate - Variable in class loci.poi.hssf.record.TickRecord
-
- autoscale(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Perform autoscaling on the given BufferedImage.
- autoscale(BufferedImage, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Perform autoscaling on the given BufferedImage;
map min to 0 and max to 255.
- autoscale(byte[], int, int, int, boolean) - Static method in class loci.formats.ImageTools
-
Perform autoscaling on the given byte array;
map min to 0 and max to 255.
- autoscaleBox - Variable in class loci.plugins.in.MainDialog
-
- autoSeries - Variable in class loci.poi.hssf.record.LegendRecord
-
- autoSize - Variable in class loci.poi.hssf.record.FrameRecord
-
- autoSizeColumn(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
Adjusts the column width to fit the contents.
- autoTextBackground - Variable in class loci.poi.hssf.record.TickRecord
-
- autoTextColor - Variable in class loci.poi.hssf.record.TickRecord
-
- autoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
-
- autoUpdate - Variable in class loci.formats.cache.Cache
-
Whether the cache should automatically update when a parameter changes.
- autoXPositioning - Variable in class loci.poi.hssf.record.LegendRecord
-
- autoYPositioning - Variable in class loci.poi.hssf.record.LegendRecord
-
- AV - Static variable in class ome.units.UNITS
-
- available() - Method in class loci.common.NIOInputStream
-
- available() - Method in class loci.common.RandomAccessInputStream
-
- available() - Method in class loci.formats.in.APNGReader.PNGInputStream
-
- available() - Method in class loci.poi.poifs.filesystem.DocumentInputStream
-
Returns the number of bytes that can be read (or skipped over)
from this input stream without blocking by the next caller of a
method for this input stream.
- available() - Method in class loci.poi.util.BlockingInputStream
-
- availMem - Variable in class loci.plugins.in.MemoryDialog
-
Remaining memory for the JVM.
- avbits - Variable in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
The number of available bits in the current byte
- AVERAGE - Static variable in class loci.formats.in.APNGReader
-
- AVERAGING - Static variable in class loci.formats.in.CellSensReader
-
- AVI_MAGIC_STRING - Static variable in class loci.formats.in.AVIReader
-
- AVIReader - Class in loci.formats.in
-
AVIReader is the file format reader for AVI files.
- AVIReader() - Constructor for class loci.formats.in.AVIReader
-
Constructs a new AVI reader.
- AVIWriter - Class in loci.formats.out
-
AVIWriter is the file format writer for AVI files.
- AVIWriter() - Constructor for class loci.formats.out.AVIWriter
-
- avoidUndeclaredNamespaces(String) - Static method in class loci.common.xml.XMLTools
-
Replaces NS:tag with NS_tag for undeclared namespaces
- AW - Static variable in class ome.units.UNITS
-
- AWTImageTools - Class in loci.formats.gui
-
A utility class with convenience methods for manipulating images
in
BufferedImage form.
- AWTImageTools() - Constructor for class loci.formats.gui.AWTImageTools
-
- ax - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The horizontal coordinate of the image origin in the canvas system, on
the reference grid.
- axis - Variable in class loci.formats.gui.CacheIndicator
-
- AXIS_TYPE_AXIS_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
-
- AXIS_TYPE_CATEGORY_OR_X_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
-
- AXIS_TYPE_MAIN - Static variable in class loci.poi.hssf.record.AxisParentRecord
-
- AXIS_TYPE_MAJOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
-
- AXIS_TYPE_MINOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
-
- AXIS_TYPE_SECONDARY - Static variable in class loci.poi.hssf.record.AxisParentRecord
-
- AXIS_TYPE_SERIES_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
-
- AXIS_TYPE_VALUE_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
-
- AXIS_TYPE_WALLS_OR_FLOOR - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
-
- AxisGuesser - Class in loci.formats
-
AxisGuesser guesses which blocks in a file pattern correspond to which
dimensional axes (Z, T, C or S), potentially recommending an adjustment in
dimension order within the files, depending on the confidence of each guess.
- AxisGuesser(FilePattern, String, int, int, int, boolean) - Constructor for class loci.formats.AxisGuesser
-
Guesses dimensional axis assignments corresponding to the given
file pattern, using the specified dimensional information from
within each file as a guide.
- AxisLineFormatRecord - Class in loci.poi.hssf.record
-
The axis line format record defines the axis type details.
- AxisLineFormatRecord() - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord
-
- AxisLineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord
-
Constructs a AxisLineFormat record and sets its fields appropriately.
- AxisOptionsRecord - Class in loci.poi.hssf.record
-
The axis options record provides unit information and other various tidbits about the axis.
- AxisOptionsRecord() - Constructor for class loci.poi.hssf.record.AxisOptionsRecord
-
- AxisOptionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisOptionsRecord
-
Constructs a AxisOptions record and sets its fields appropriately.
- AxisParentRecord - Class in loci.poi.hssf.record
-
The axis size and location
NOTE: This source is automatically generated please do not modify this file.
- AxisParentRecord() - Constructor for class loci.poi.hssf.record.AxisParentRecord
-
- AxisParentRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisParentRecord
-
Constructs a AxisParent record and sets its fields appropriately.
- AxisRecord - Class in loci.poi.hssf.record
-
The axis record defines the type of an axis.
- AxisRecord() - Constructor for class loci.poi.hssf.record.AxisRecord
-
- AxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisRecord
-
Constructs a Axis record and sets its fields appropriately.
- axisTypes - Variable in class loci.formats.AxisGuesser
-
Guessed axis types.
- AxisUsedRecord - Class in loci.poi.hssf.record
-
The number of axes used on a chart.
- AxisUsedRecord() - Constructor for class loci.poi.hssf.record.AxisUsedRecord
-
- AxisUsedRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisUsedRecord
-
Constructs a AxisUsed record and sets its fields appropriately.
- ay - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The vertical coordinate of the image origin in the canvas system, on
the reference grid.
- b - Variable in class jj2000.j2k.entropy.decoder.MQDecoder
-
The last byte read
- b - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The last encoded byte of data
- b(String) - Method in class loci.formats.in.PrairieMetadata
-
Converts the given string to a boolean.
- ba - Variable in class mdbtools.libmdb.Holder
-
- BACK_MASK - Static variable in class loci.common.RandomAccessInputStream
-
Various bitmasks for the 0000xxxx side of a byte.
- BACK_MASK - Static variable in class loci.formats.codec.BitBuffer
-
Deprecated.
Various bitmasks for the 0000xxxx side of a byte.
- backend - Class in mdbtools.libmdb
-
- backend() - Constructor for class mdbtools.libmdb.backend
-
- backend_name - Variable in class mdbtools.libmdb.MdbFile
-
- backend_name - Variable in class mdbtools.libmdb.MdbHandle
-
- background - Variable in class loci.poi.hssf.usermodel.EscherGraphics
-
- BACKGROUND_TABLE - Static variable in class loci.formats.in.LiFlimReader
-
- backgroundC - Variable in class loci.formats.in.LiFlimReader
-
- backgroundColor - Variable in class loci.formats.in.CellSensReader
-
- backgroundColorIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- backgroundDatatype - Variable in class loci.formats.in.LiFlimReader
-
- backgroundF - Variable in class loci.formats.in.LiFlimReader
-
- backgroundP - Variable in class loci.formats.in.LiFlimReader
-
- backgroundT - Variable in class loci.formats.in.LiFlimReader
-
- backgroundX - Variable in class loci.formats.in.LiFlimReader
-
- backgroundY - Variable in class loci.formats.in.LiFlimReader
-
- backgroundZ - Variable in class loci.formats.in.LiFlimReader
-
- backingBuffer - Variable in class loci.tests.testng.ConversionTest.Plane
-
- backingSet - Variable in class ome.xml.model.ReferenceList
-
- backupHandler - Variable in class loci.formats.in.NativeND2Reader
-
- backuppos - Variable in class loci.poi.hssf.model.WorkbookRecordList
-
- BackupRecord - Class in loci.poi.hssf.record
-
Title: Backup Record
- BackupRecord() - Constructor for class loci.poi.hssf.record.BackupRecord
-
- BackupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BackupRecord
-
Constructs a BackupRecord and sets its fields appropriately
- BACKWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
-
- backwardsStage - Variable in class loci.formats.in.DeltavisionReader
-
Whether or not the stage moved backwards.
- BAD_DATE - Static variable in class loci.poi.hssf.usermodel.HSSFDateUtil
-
- badFontHeight - Static variable in class loci.poi.hssf.record.RowRecord
-
- bais - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
The byte array that is the source of data if the PktHeaderBitReader
is instantiated with a buffer instead of a RandomAccessIO
- bak_lblock - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The saved base number of bits for sending code-block length
information.
- bak_prevtIdxs - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The saved last encoded truncation point for each code-block.
- baknBytes - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Backup of the number of bytes allocated to each tile.
- bandOffsets - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- bandsPresent - Variable in class ome.jxr.parser.DatastreamParser
-
Deprecated.
- bandStride - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The strides for pixel, band, and scanline.
- bankData - Variable in class loci.formats.gui.SignedByteBuffer
-
- bankData - Variable in class loci.formats.gui.UnsignedIntBuffer
-
- baos - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
- baos - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
-
The ByteArrayOutputStream to store header data.
- BAR - Static variable in class ome.units.UNITS
-
- barcode - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection
-
- barr - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Buffer for the 3 components of each pixel(in the current block)
- BarRecord - Class in loci.poi.hssf.record
-
The bar record is used to define a bar chart.
- BarRecord() - Constructor for class loci.poi.hssf.record.BarRecord
-
- BarRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BarRecord
-
Constructs a Bar record and sets its fields appropriately.
- barrierFilter - Variable in class loci.formats.in.FV1000Reader.ChannelData
-
- base - Variable in class loci.common.CBZip2InputStream.Data
-
- base - Variable in class loci.formats.ClassList
-
Base class to which all classes are assignable.
- base64Alphabet - Static variable in class loci.formats.codec.Base64Codec
-
- base64Binary - Variable in class ome.xml.model.BinData
-
- Base64Codec - Class in loci.formats.codec
-
Implements encoding (compress) and decoding (decompress) methods
for Base64.
- Base64Codec() - Constructor for class loci.formats.codec.Base64Codec
-
- BASE_BLOCK_SIZE - Static variable in class loci.common.CBZip2InputStream
-
- BASE_OFFSET - Static variable in class loci.formats.in.BioRadGelReader
-
- BaseCodec - Class in loci.formats.codec
-
BaseCodec contains default implementation and testing for classes
implementing the Codec interface, and acts as a base class for any
of the compression classes.
- BaseCodec() - Constructor for class loci.formats.codec.BaseCodec
-
- baseConfigName - Static variable in class loci.tests.testng.TestTools
-
- basedir - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo
-
- BaseHandler - Class in loci.common.xml
-
Top-level SAX handler.
- BaseHandler() - Constructor for class loci.common.xml.BaseHandler
-
- BASELINE_CLAMP - Static variable in class loci.formats.in.FluoviewReader
-
- BASELINE_OFFSET - Static variable in class loci.formats.in.FluoviewReader
-
- BASELINE_OFFSET_CLAMP - Static variable in class loci.formats.in.CellSensReader
-
- BaselineTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff
-
A class representing the set of tags found in the baseline TIFF
specification as well as some common additional tags.
- BaselineTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
- BaselineTIFFTagSet.Artist - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.Artist() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Artist
-
- BaselineTIFFTagSet.BitsPerSample - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.BitsPerSample() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.BitsPerSample
-
- BaselineTIFFTagSet.CellLength - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.CellLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.CellLength
-
- BaselineTIFFTagSet.CellWidth - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.CellWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.CellWidth
-
- BaselineTIFFTagSet.ColorMap - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.ColorMap() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ColorMap
-
- BaselineTIFFTagSet.Compression - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.Compression() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Compression
-
- BaselineTIFFTagSet.Copyright - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.Copyright() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Copyright
-
- BaselineTIFFTagSet.DateTime - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.DateTime() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.DateTime
-
- BaselineTIFFTagSet.DocumentName - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.DocumentName() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.DocumentName
-
- BaselineTIFFTagSet.DotRange - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.DotRange() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.DotRange
-
- BaselineTIFFTagSet.ExtraSamples - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.ExtraSamples() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ExtraSamples
-
- BaselineTIFFTagSet.FillOrder - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.FillOrder() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.FillOrder
-
- BaselineTIFFTagSet.FreeByteCounts - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.FreeByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.FreeByteCounts
-
- BaselineTIFFTagSet.FreeOffsets - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.FreeOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.FreeOffsets
-
- BaselineTIFFTagSet.GrayResponseCurve - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.GrayResponseCurve() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.GrayResponseCurve
-
- BaselineTIFFTagSet.GrayResponseUnit - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.GrayResponseUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.GrayResponseUnit
-
- BaselineTIFFTagSet.HalftoneHints - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.HalftoneHints() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.HalftoneHints
-
- BaselineTIFFTagSet.HostComputer - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.HostComputer() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.HostComputer
-
- BaselineTIFFTagSet.ICCProfile - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.ICCProfile() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ICCProfile
-
- BaselineTIFFTagSet.ImageDescription - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.ImageDescription() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageDescription
-
- BaselineTIFFTagSet.ImageLength - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.ImageLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageLength
-
- BaselineTIFFTagSet.ImageWidth - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.ImageWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageWidth
-
- BaselineTIFFTagSet.InkNames - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.InkNames() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.InkNames
-
- BaselineTIFFTagSet.InkSet - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.InkSet() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.InkSet
-
- BaselineTIFFTagSet.JPEGACTables - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGACTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGACTables
-
- BaselineTIFFTagSet.JPEGDCTables - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGDCTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGDCTables
-
- BaselineTIFFTagSet.JPEGInterchangeFormat - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGInterchangeFormat() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGInterchangeFormat
-
- BaselineTIFFTagSet.JPEGInterchangeFormatLength - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGInterchangeFormatLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGInterchangeFormatLength
-
- BaselineTIFFTagSet.JPEGLosslessPredictors - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGLosslessPredictors() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGLosslessPredictors
-
- BaselineTIFFTagSet.JPEGPointTransforms - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGPointTransforms() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGPointTransforms
-
- BaselineTIFFTagSet.JPEGProc - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGProc() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGProc
-
- BaselineTIFFTagSet.JPEGQTables - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGQTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGQTables
-
- BaselineTIFFTagSet.JPEGRestartInterval - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGRestartInterval() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGRestartInterval
-
- BaselineTIFFTagSet.JPEGTables - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.JPEGTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGTables
-
- BaselineTIFFTagSet.Make - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.Make() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Make
-
- BaselineTIFFTagSet.MaxSampleValue - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.MaxSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.MaxSampleValue
-
- BaselineTIFFTagSet.MinSampleValue - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.MinSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.MinSampleValue
-
- BaselineTIFFTagSet.Model - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.Model() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Model
-
- BaselineTIFFTagSet.NewSubfileType - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.NewSubfileType() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.NewSubfileType
-
- BaselineTIFFTagSet.NumberOfInks - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.NumberOfInks() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.NumberOfInks
-
- BaselineTIFFTagSet.Orientation - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.Orientation() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Orientation
-
- BaselineTIFFTagSet.PageName - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.PageName() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PageName
-
- BaselineTIFFTagSet.PageNumber - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.PageNumber() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PageNumber
-
- BaselineTIFFTagSet.PhotometricInterpretation - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.PhotometricInterpretation() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PhotometricInterpretation
-
- BaselineTIFFTagSet.PlanarConfiguration - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.PlanarConfiguration() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PlanarConfiguration
-
- BaselineTIFFTagSet.Predictor - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.Predictor() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Predictor
-
- BaselineTIFFTagSet.PrimaryChromaticities - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.PrimaryChromaticities() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PrimaryChromaticities
-
- BaselineTIFFTagSet.ReferenceBlackWhite - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.ReferenceBlackWhite() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ReferenceBlackWhite
-
- BaselineTIFFTagSet.ResolutionUnit - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.ResolutionUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ResolutionUnit
-
- BaselineTIFFTagSet.RowsPerStrip - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.RowsPerStrip() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.RowsPerStrip
-
- BaselineTIFFTagSet.SampleFormat - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.SampleFormat() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SampleFormat
-
- BaselineTIFFTagSet.SamplesPerPixel - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.SamplesPerPixel() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SamplesPerPixel
-
- BaselineTIFFTagSet.SMaxSampleValue - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.SMaxSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SMaxSampleValue
-
- BaselineTIFFTagSet.SMinSampleValue - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.SMinSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SMinSampleValue
-
- BaselineTIFFTagSet.Software - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.Software() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Software
-
- BaselineTIFFTagSet.StripByteCounts - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.StripByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.StripByteCounts
-
- BaselineTIFFTagSet.StripOffsets - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.StripOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.StripOffsets
-
- BaselineTIFFTagSet.SubfileType - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.SubfileType() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SubfileType
-
- BaselineTIFFTagSet.T4Options - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.T4Options() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.T4Options
-
- BaselineTIFFTagSet.T6Options - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.T6Options() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.T6Options
-
- BaselineTIFFTagSet.TargetPrinter - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.TargetPrinter() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TargetPrinter
-
- BaselineTIFFTagSet.Threshholding - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.Threshholding() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Threshholding
-
- BaselineTIFFTagSet.TileByteCounts - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.TileByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileByteCounts
-
- BaselineTIFFTagSet.TileLength - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.TileLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileLength
-
- BaselineTIFFTagSet.TileOffsets - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.TileOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileOffsets
-
- BaselineTIFFTagSet.TileWidth - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.TileWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileWidth
-
- BaselineTIFFTagSet.TransferFunction - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.TransferFunction() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TransferFunction
-
- BaselineTIFFTagSet.TransferRange - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.TransferRange() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TransferRange
-
- BaselineTIFFTagSet.WhitePoint - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.WhitePoint() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.WhitePoint
-
- BaselineTIFFTagSet.XPosition - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.XPosition() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.XPosition
-
- BaselineTIFFTagSet.XResolution - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.XResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.XResolution
-
- BaselineTIFFTagSet.YCbCrCoefficients - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.YCbCrCoefficients() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrCoefficients
-
- BaselineTIFFTagSet.YCbCrPositioning - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.YCbCrPositioning() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrPositioning
-
- BaselineTIFFTagSet.YCbCrSubSampling - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.YCbCrSubSampling() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrSubSampling
-
- BaselineTIFFTagSet.YPosition - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.YPosition() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YPosition
-
- BaselineTIFFTagSet.YResolution - Class in com.sun.media.imageio.plugins.tiff
-
- BaselineTIFFTagSet.YResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YResolution
-
- BaseMetadata - Interface in loci.formats.meta
-
- BaseMetadata - Interface in ome.xml.meta
-
A proxy capable of bidirectional communication of biological image data to
and from a particular storage medium.
- basename - Variable in class loci.formats.in.ZeissTIFFHandler.Plane
-
- baseReader - Variable in class loci.plugins.in.ImportProcess
-
- baseTiff - Variable in class loci.formats.in.MicromanagerReader.Position
-
- BaseTiffReader - Class in loci.formats.in
-
BaseTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
- BaseTiffReader(String, String) - Constructor for class loci.formats.in.BaseTiffReader
-
Constructs a new BaseTiffReader.
- BaseTiffReader(String, String[]) - Constructor for class loci.formats.in.BaseTiffReader
-
Constructs a new BaseTiffReader.
- baseURI - Variable in class loci.common.xml.LSInputI
-
- BaseZeissReader - Class in loci.formats.in
-
BaseZeissReader contains common functionality required by
readers for Zeiss AxioVision formats.
- BaseZeissReader(String, String) - Constructor for class loci.formats.in.BaseZeissReader
-
Constructs a new ZeissZVI reader.
- BaseZeissReader(String, String[]) - Constructor for class loci.formats.in.BaseZeissReader
-
Constructs a new ZeissZVI reader.
- BaseZeissReader.Charset - Enum in loci.formats.in
-
- BaseZeissReader.Charset(int, String) - Constructor for enum loci.formats.in.BaseZeissReader.Charset
-
- BaseZeissReader.Context - Enum in loci.formats.in
-
- BaseZeissReader.Context() - Constructor for enum loci.formats.in.BaseZeissReader.Context
-
- BaseZeissReader.DrawStyle - Enum in loci.formats.in
-
Line drawing styles.
- BaseZeissReader.DrawStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.DrawStyle
-
- BaseZeissReader.FeatureType - Enum in loci.formats.in
-
Feature types.
- BaseZeissReader.FeatureType(int, int) - Constructor for enum loci.formats.in.BaseZeissReader.FeatureType
-
- BaseZeissReader.FillStyle - Enum in loci.formats.in
-
Fill styles.
- BaseZeissReader.FillStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.FillStyle
-
- BaseZeissReader.Layer - Class in loci.formats.in
-
Layer class representing an AxioVision layer; used to contain a
collection of shapes.
- BaseZeissReader.Layer() - Constructor for class loci.formats.in.BaseZeissReader.Layer
-
- BaseZeissReader.LineEndPositions - Enum in loci.formats.in
-
- BaseZeissReader.LineEndPositions(int) - Constructor for enum loci.formats.in.BaseZeissReader.LineEndPositions
-
- BaseZeissReader.LineEndStyle - Enum in loci.formats.in
-
Line ending styles.
- BaseZeissReader.LineEndStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.LineEndStyle
-
- BaseZeissReader.PointStyle - Enum in loci.formats.in
-
Point styles.
- BaseZeissReader.PointStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.PointStyle
-
- BaseZeissReader.Shape - Class in loci.formats.in
-
Shape class representing the metadata within an AxioVision Shape ROI
- BaseZeissReader.Shape() - Constructor for class loci.formats.in.BaseZeissReader.Shape
-
- BaseZeissReader.Tag - Class in loci.formats.in
-
Content of a single tag from a Tags block.
- BaseZeissReader.Tag(int, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag
-
Constructor.
- BaseZeissReader.Tag(int, String, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag
-
Constructor.
- BaseZeissReader.TextAlignment - Enum in loci.formats.in
-
- BaseZeissReader.TextAlignment(int) - Constructor for enum loci.formats.in.BaseZeissReader.TextAlignment
-
- BasicAnnotation - Class in ome.xml.model
-
- BasicAnnotation() - Constructor for class ome.xml.model.BasicAnnotation
-
Default constructor.
- BasicAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BasicAnnotation
-
Constructs BasicAnnotation recursively from an XML DOM tree.
- BasicAnnotation(BasicAnnotation) - Constructor for class ome.xml.model.BasicAnnotation
-
Copy constructor.
- BATBlock - Class in loci.poi.poifs.storage
-
A block of block allocation table entries.
- BATBlock(int) - Constructor for class loci.poi.poifs.storage.BATBlock
-
Create a single instance initialized with default values
- BATBlock(int[], int, int, int) - Constructor for class loci.poi.poifs.storage.BATBlock
-
Create a single instance initialized (perhaps partially) with entries
- BATManaged - Interface in loci.poi.poifs.filesystem
-
This interface defines behaviors for objects managed by the Block
Allocation Table (BAT).
- batsInHeader - Variable in class loci.poi.poifs.storage.HeaderBlockReader
-
- baxcel - Variable in class loci.poi.hssf.record.formula.AttrPtg
-
- bayerPattern - Variable in class loci.formats.in.MRWReader
-
- bbox - Variable in class loci.formats.in.CellH5Reader
-
- BBOX - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- bBox - Variable in class loci.formats.services.WlzServiceImpl
-
- bbuf - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
The current bit buffer
- bbuf - Variable in class jj2000.j2k.entropy.decoder.ByteToBitInput
-
The bit buffer
- bbuf - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput
-
The bit buffer
- BDReader - Class in loci.formats.in
-
BDReader is the file format reader for BD Pathway datasets.
- BDReader() - Constructor for class loci.formats.in.BDReader
-
Constructs a new ScanR reader.
- BEAM_SPLITTER_FILTER - Static variable in class loci.formats.in.ZeissLSMReader
-
- BEAM_SPLITTER_FILTER_SET - Static variable in class loci.formats.in.ZeissLSMReader
-
- BEBufferedRandomAccessFile - Class in jj2000.j2k.io
-
This class defines a Buffered Random Access File, where all I/O is
considered to be big-endian, and extends the
BufferedRandomAccessFile class.
- BEBufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Constructor.
- BEBufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Constructor.
- BEBufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Constructor.
- BEBufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Constructor.
- beforeRecordSerialize(int, short, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener
-
Fired before a given escher record is serialized.
- beforeRecordSerialize(int, short, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener
-
- begin - Variable in class loci.formats.FilePatternBlock
-
- beginDecoding() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
This routine is called prior to a sequence of calls to the
decode method, in order to allow any necessary
tables or other structures to be initialized based on metadata
values.
- beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
Invokes the superclass method and then sets instance variables on
the basis of the metadata set on this decompressor.
- beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
-
- beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
-
- beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- BeginRecord - Class in loci.poi.hssf.record
-
The begin record defines the start of a block of records for a (grpahing
data object.
- BeginRecord() - Constructor for class loci.poi.hssf.record.BeginRecord
-
- BeginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BeginRecord
-
Constructs a BeginRecord record and sets its fields appropriately.
- BETA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
The value of the second lifting step coefficient
- BETA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
The value of the second lifting step coefficient
- BEZIER_WITH_ARROW - Static variable in class loci.formats.in.ZeissLSMReader
-
- BF - Class in loci.plugins
-
Miscellaneous plugins utility methods.
- BF() - Constructor for class loci.plugins.BF
-
- bf_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor
-
output destination for bit codes
- BFVirtualStack - Class in loci.plugins.util
-
Subclass of VirtualStack that uses Bio-Formats to read planes on demand.
- BFVirtualStack(String, IFormatReader, boolean, boolean, boolean) - Constructor for class loci.plugins.util.BFVirtualStack
-
- BGR - Static variable in class loci.formats.in.CellSensReader
-
- BGR_24 - Static variable in class loci.formats.in.ZeissCZIReader
-
- BGR_48 - Static variable in class loci.formats.in.ZeissCZIReader
-
- BGR_FLOAT - Static variable in class loci.formats.in.ZeissCZIReader
-
- BGRA_8 - Static variable in class loci.formats.in.ZeissCZIReader
-
- bgrToRgb(byte[], boolean, int, int) - Static method in class loci.formats.ImageTools
-
- BH_HEADER_CHKSUM - Static variable in class loci.formats.in.SDTInfo
-
- BH_HEADER_NOT_VALID - Static variable in class loci.formats.in.SDTInfo
-
- BH_HEADER_VALID - Static variable in class loci.formats.in.SDTInfo
-
- bi - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
The destination image.
- bi - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
The destination image.
- BI_BITFIELDS - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_JPEG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_PNG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_RLE4 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_RLE8 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BiffViewer - Class in loci.poi.hssf.dev
-
Utillity for reading in BIFF8 records and displaying data from them.
- BiffViewer(String[]) - Constructor for class loci.poi.hssf.dev.BiffViewer
-
Creates new BiffViewer
- BiffViewer.BiffviewRecordInputStream - Class in loci.poi.hssf.dev
-
- BiffViewer.BiffviewRecordInputStream(InputStream) - Constructor for class loci.poi.hssf.dev.BiffViewer.BiffviewRecordInputStream
-
- BiffViewer.RecordDetails - Class in loci.poi.hssf.dev
-
This record supports dumping of completed continue records.
- BiffViewer.RecordDetails(short, short, int, Record) - Constructor for class loci.poi.hssf.dev.BiffViewer.RecordDetails
-
- BIFormatReader - Class in loci.formats.in
-
BIFormatReader is the superclass for file format readers
that use java.awt.image.BufferedImage as the native data type.
- BIFormatReader(String, String) - Constructor for class loci.formats.in.BIFormatReader
-
Constructs a new BIFormatReader.
- BIFormatReader(String, String[]) - Constructor for class loci.formats.in.BIFormatReader
-
Constructs a new BIFormatReader.
- BIG - Static variable in class loci.formats.tiff.TiffConstants
-
- BIG_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType
-
Identifier for big-endian byte ordering (i.e.
- BIG_ENDIAN_ATTRIBUTE - Static variable in class ome.specification.XMLWriter
-
Identifies the BigEndian attribute.
- BIG_SPOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- BIG_SPOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Large spots
- BIG_TIFF - Static variable in class loci.formats.tiff.IFD
-
- BIG_TIFF - Static variable in class loci.tests.testng.TiffWriterTest
-
The big tiff flags.
- BIG_TIFF_BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants
-
The number of bytes in each IFD entry of a BigTIFF file.
- BIG_TIFF_CUTOFF - Static variable in class loci.formats.out.TiffWriter
-
Number of bytes at which to automatically switch to BigTIFF
This is approximately 3.9 GB instead of 4 GB,
to allow space for the IFDs.
- BIG_TIFF_MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants
-
- BIG_TIFF_SUFFIXES - Static variable in class loci.formats.out.TiffWriter
-
- BigBlock - Class in loci.poi.poifs.storage
-
- BigBlock() - Constructor for class loci.poi.poifs.storage.BigBlock
-
- bigBlocks - Variable in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore
-
- bigBlockSize - Variable in class loci.poi.poifs.eventfilesystem.POIFSReader
-
- bigBlockSize - Variable in class loci.poi.poifs.filesystem.POIFSDocument
-
- bigBlockSize - Variable in class loci.poi.poifs.filesystem.POIFSFileSystem
-
- bigBlockSize - Variable in class loci.poi.poifs.storage.HeaderBlockWriter
-
- bigBlockSize - Variable in class loci.poi.poifs.storage.RawDataBlockList
-
- bigEndian - Variable in class ome.xml.model.BinData
-
- bigEndian - Variable in class ome.xml.model.Pixels
-
- bigEndianString - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
-
- bigEndianTransferSyntax - Variable in class loci.formats.in.DicomReader
-
- bigImage - Variable in class loci.tests.testng.OpenBytesPerformanceTest
-
- bigTiff - Variable in class loci.formats.tiff.TiffParser
-
Whether or not the TIFF file contains BigTIFF data.
- bigTiff - Variable in class loci.formats.tiff.TiffSaver
-
Whether or not to write BigTIFF data.
- bin - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
The wrapper to read bits for the packet heads
- bin - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The bit based input for arithmetic coding bypass (i.e.
- bin - Variable in class loci.formats.in.InCellReader
-
- BIN_DATA_TAG - Static variable in class ome.specification.XMLWriter
-
Identifies the BinData tag.
- binary - Variable in class loci.formats.in.EPSReader
-
Flag indicating binary data.
- BINARY_SETUP - Static variable in class loci.formats.in.SDTInfo
-
- BinaryDataInput - Interface in jj2000.j2k.io
-
This interface defines the input of binary data from streams and/or files.
- BinaryDataOutput - Interface in jj2000.j2k.io
-
This interface defines the output of binary data to streams and/or files.
- BinaryFile - Class in ome.xml.model
-
- BinaryFile() - Constructor for class ome.xml.model.BinaryFile
-
Default constructor.
- BinaryFile(Element, OMEModel) - Constructor for class ome.xml.model.BinaryFile
-
Constructs BinaryFile recursively from an XML DOM tree.
- BinaryFile(BinaryFile) - Constructor for class ome.xml.model.BinaryFile
-
Copy constructor.
- binaryFile - Variable in class ome.xml.model.FileAnnotation
-
- BinaryOnly - Class in ome.xml.model
-
- BinaryOnly() - Constructor for class ome.xml.model.BinaryOnly
-
Default constructor.
- BinaryOnly(Element, OMEModel) - Constructor for class ome.xml.model.BinaryOnly
-
Constructs BinaryOnly recursively from an XML DOM tree.
- BinaryOnly(BinaryOnly) - Constructor for class ome.xml.model.BinaryOnly
-
Copy constructor.
- binaryOnly - Variable in class ome.xml.model.OME
-
- BinaryTree - Class in loci.poi.util
-
Red-Black tree-based implementation of Map.
- BinaryTree() - Constructor for class loci.poi.util.BinaryTree
-
Construct a new BinaryTree
- BinaryTree(Map) - Constructor for class loci.poi.util.BinaryTree
-
Constructs a new BinaryTree from an existing Map, with keys and
values sorted
- BinaryTree.BinaryTreeIterator - Class in loci.poi.util
-
- BinaryTree.BinaryTreeIterator(int) - Constructor for class loci.poi.util.BinaryTree.BinaryTreeIterator
-
Constructor
- BinaryTree.Node - Class in loci.poi.util
-
- BinaryTree.Node(Comparable, Comparable) - Constructor for class loci.poi.util.BinaryTree.Node
-
Make a new cell with given key and value, and with null
links, and black (true) colors.
- bind_ptr - Variable in class mdbtools.libmdb.MdbColumn
-
- binData - Variable in class loci.formats.in.OMEXMLReader
-
- binData - Variable in class ome.xml.model.BinaryFile
-
- BinData - Class in ome.xml.model
-
- BinData() - Constructor for class ome.xml.model.BinData
-
Default constructor.
- BinData(Element, OMEModel) - Constructor for class ome.xml.model.BinData
-
Constructs BinData recursively from an XML DOM tree.
- BinData(BinData) - Constructor for class ome.xml.model.BinData
-
Copy constructor.
- binData - Variable in class ome.xml.model.Mask
-
- binDataBlocks - Variable in class ome.xml.model.Pixels
-
- binDataOffsets - Variable in class loci.formats.in.OMEXMLReader
-
- binning - Variable in class loci.formats.in.BDReader
-
- binning - Variable in class loci.formats.in.BioRadSCNReader
-
- binning - Variable in class loci.formats.in.MetamorphHandler
-
- binning - Variable in class loci.formats.in.MetamorphReader
-
- binning - Variable in class loci.formats.in.MicromanagerReader.Position
-
- binning - Variable in class loci.formats.in.ND2Handler
-
- binning - Variable in class loci.formats.in.PCIReader
-
- binning - Variable in class loci.formats.in.SimplePCITiffReader
-
- binning - Variable in class loci.formats.in.ZeissLSMReader
-
- binning - Variable in class loci.formats.in.ZeissLSMReader.Recording
-
- BINNING - Static variable in class ome.specification.XMLMockObjects
-
The default binning value.
- binning - Variable in class ome.xml.model.DetectorSettings
-
- Binning - Enum in ome.xml.model.enums
-
- Binning(String) - Constructor for enum ome.xml.model.enums.Binning
-
- BinningEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for Binning.
- BinningEnumHandler() - Constructor for class ome.xml.model.enums.handlers.BinningEnumHandler
-
- binnings - Variable in class loci.formats.in.FlexReader
-
- binnings - Variable in class loci.formats.in.ZeissCZIReader
-
- binningX - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- binningY - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- binSize - Variable in class loci.formats.in.SPCReader
-
- binX - Variable in class loci.formats.in.FlexReader
-
Camera binning values.
- binX - Variable in class loci.formats.in.IvisionReader
-
- binY - Variable in class loci.formats.in.FlexReader
-
Camera binning values.
- binY - Variable in class loci.formats.in.IvisionReader
-
- BioFormatsExtensionPrinter - Class in loci.formats.tools
-
This class is used to generate a text file containing all of the
image file extensions supported by Bio-Formats.
- BioFormatsExtensionPrinter() - Constructor for class loci.formats.tools.BioFormatsExtensionPrinter
-
- BioRadGelReader - Class in loci.formats.in
-
BioRadGelReader is the file format reader for Bio-Rad gel files.
- BioRadGelReader() - Constructor for class loci.formats.in.BioRadGelReader
-
Constructs a new Bio-Rad gel reader.
- BioRadReader - Class in loci.formats.in
-
BioRadReader is the file format reader for Bio-Rad PIC files.
- BioRadReader() - Constructor for class loci.formats.in.BioRadReader
-
Constructs a new BioRadReader.
- BioRadReader.BioRadHandler - Class in loci.formats.in
-
SAX handler for parsing XML.
- BioRadReader.BioRadHandler() - Constructor for class loci.formats.in.BioRadReader.BioRadHandler
-
- BioRadReader.Note - Class in loci.formats.in
-
- BioRadReader.Note() - Constructor for class loci.formats.in.BioRadReader.Note
-
- BioRadSCNReader - Class in loci.formats.in
-
BioRadSCNReader is the reader for Bio-Rad .scn files
- BioRadSCNReader() - Constructor for class loci.formats.in.BioRadSCNReader
-
Constructs a new Bio-Rad .scn reader.
- BioRadSCNReader.SCNHandler - Class in loci.formats.in
-
- BioRadSCNReader.SCNHandler() - Constructor for class loci.formats.in.BioRadSCNReader.SCNHandler
-
- biReader - Variable in class loci.formats.gui.DataConverter
-
- bit - Variable in class loci.formats.codec.BitWriter
-
Deprecated.
Bit index into current byte of the buffer.
- BIT - Static variable in class loci.formats.FormatTools
-
Identifies the BIT data type used to store pixel values.
- BIT_DEPTH - Static variable in class loci.formats.in.CellSensReader
-
- BitBuffer - Class in loci.formats.codec
-
Deprecated.
Use loci.common.RandomAccessInputStream instead
- BitBuffer(byte[]) - Constructor for class loci.formats.codec.BitBuffer
-
Deprecated.
Default constructor.
- bitDepth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
- bitDepth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
- bitDepth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- bitDepth - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
- bitDepth - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- BitDepth - Enum in ome.jxr.image
-
- BitDepth(Integer...) - Constructor for enum ome.jxr.image.BitDepth
-
Deprecated.
- bitDepths - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Various bit depth
- bitDepthScale - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- BitField - Class in loci.poi.util
-
Manage operations dealing with bit-mapped fields.
- BitField(int) - Constructor for class loci.poi.util.BitField
-
Create a BitField instance
- BitFieldFactory - Class in loci.poi.util
-
Returns immutable Btfield instances.
- BitFieldFactory() - Constructor for class loci.poi.util.BitFieldFactory
-
- BitFile - Class in com.sun.media.imageioimpl.common
-
Came from GIFEncoder initially.
- BitFile(ImageOutputStream, boolean) - Constructor for class com.sun.media.imageioimpl.common.BitFile
-
- bitmapFileSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- bitmapOffset - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- BITMASK_COMPRESSION - Static variable in class loci.formats.in.FlowSightReader
-
- bitMasks - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- BitOutputBuffer - Class in jj2000.j2k.codestream.writer
-
This class implements a buffer for writing bits, with the required bit
stuffing policy for the packet headers.
- BitOutputBuffer() - Constructor for class jj2000.j2k.codestream.writer.BitOutputBuffer
-
Creates a new BitOutputBuffer width a buffer of length
'SZ_INIT'.
- bitPointer - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- bitPos - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- bits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Output bit buffer.
- bits - Variable in class loci.formats.in.TargaReader
-
- bits - Variable in enum ome.jxr.ifd.PixelType
-
Deprecated.
- BITS_ALLOCATED - Static variable in class loci.formats.in.DicomReader
-
- BITS_PER_COMPONENT_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- BITS_PER_SAMPLE - Static variable in class loci.formats.tiff.IFD
-
- bitsLeft_ - Variable in class com.sun.media.imageioimpl.common.BitFile
-
- BitsPerComponentBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a Bits Per Component Box of JPEG
JP2 file format.
- BitsPerComponentBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox
-
Counstructs a BitsPerComponentBox from the provided
byte array containing the bit depths of each color component.
- BitsPerComponentBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox
-
Constructs a BitsPerComponentBox based on the provide
org.w3c.dom.Node.
- bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- bitsPerPixel - Variable in class loci.formats.CoreMetadata
-
Number of valid bits per pixel.
- bitsPerPixel - Variable in class loci.formats.in.DicomReader
-
Bits per pixel.
- bitsPerPixel - Variable in class loci.formats.in.NativeQTReader
-
Pixel depth.
- bitsPerSample - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The value of the BitsPerSample tag.
- bitsPerSample - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- bitsPerSample - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- bitsPerSample - Variable in class loci.formats.codec.CodecOptions
-
Number of bits per channel.
- bitsPerSampleCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- bitsPerScanline - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- bitsToGet - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- bitsToGet - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- BitstreamReaderAgent - Class in jj2000.j2k.codestream.reader
-
This is the generic interface for bit stream reader agents.
- BitstreamReaderAgent(HeaderDecoder, DecoderSpecs) - Constructor for class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Initializes members of this class.
- BitToByteOutput - Class in jj2000.j2k.entropy.encoder
-
This class provides an adapter to perform bit based output on byte based
output objects that inherit from a 'ByteOutputBuffer' class.
- BitToByteOutput(ByteOutputBuffer) - Constructor for class jj2000.j2k.entropy.encoder.BitToByteOutput
-
Instantiates a new 'BitToByteOutput' object that uses 'out' as the
underlying byte based output.
- BitWriter - Class in loci.formats.codec
-
Deprecated.
Use loci.common.RandomAccessOutputStream instead
- BitWriter() - Constructor for class loci.formats.codec.BitWriter
-
Deprecated.
Constructs a new bit writer.
- BitWriter(int) - Constructor for class loci.formats.codec.BitWriter
-
Deprecated.
Constructs a new bit writer with the given initial buffer size.
- biWriter - Variable in class loci.formats.gui.DataConverter
-
- bizarreMultichannelAcquisition - Variable in class loci.formats.in.MetamorphReader
-
- BLACK - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
The CCITT numerical definition of black.
- black - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- blank(byte[]) - Method in class loci.formats.in.PrairieReader
-
Blanks out and returns the given buffer.
- blankImage(int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Creates a blank image with the given dimensions and transfer type.
- BlankRecord - Class in loci.poi.hssf.record
-
Title: Blank cell record
- BlankRecord() - Constructor for class loci.poi.hssf.record.BlankRecord
-
Creates a new instance of BlankRecord
- BlankRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BlankRecord
-
Constructs a BlankRecord and sets its fields appropriately
- blankThumbBytes - Variable in class loci.formats.FileStitcher.ExternalSeries
-
- blip - Variable in class loci.poi.hssf.usermodel.HSSFPictureData
-
Underlying escher blip record containing the bitmap data.
- BLIP__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__BLIPTODISPLAY - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__BRIGHTNESSSETTING - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CONTRASTSETTING - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CROPFROMBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CROPFROMLEFT - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CROPFROMRIGHT - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CROPFROMTOP - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__DOUBLEMOD - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__GAMMA - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__NOHITTESTPICTURE - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREACTIVE - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREBILEVEL - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREFILLMOD - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREGRAY - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREID - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTURELINE - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PRINTBLIP - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PRINTBLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PRINTFLAGS - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__TRANSPARENTCOLOR - Static variable in class loci.poi.ddf.EscherProperties
-
- BlkImgDataSrc - Interface in jj2000.j2k.image
-
This interface defines the methods to transfer image data in blocks,
without following any particular order (random access).
- block - Variable in class loci.formats.FilePatternBlock
-
String representation of this block.
- block0 - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Block used to request component with index 0
- block0 - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Block used to request component 0
- block1 - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Block used to request component with index 1
- block1 - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Block used to request component 1
- block2 - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Block used to request component with index 2
- block2 - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Block used to request component 2
- BLOCK_END - Static variable in class loci.formats.FilePatternBlock
-
Identifies the end of a block.
- BLOCK_SIZE - Static variable in class loci.poi.hssf.record.DBCellRecord
-
- BLOCK_START - Static variable in class loci.formats.FilePatternBlock
-
Identifies the start of a block.
- blockAligned - Variable in class jj2000.j2k.roi.encoder.ROIScaler
-
Flag indicating if block aligned ROIs are used
- BlockAllocationTableReader - Class in loci.poi.poifs.storage
-
This class manages and creates the Block Allocation Table, which is
basically a set of linked lists of block indices.
- BlockAllocationTableReader(int, int[], int, int, BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader
-
create a BlockAllocationTableReader for an existing filesystem.
- BlockAllocationTableReader(ListManagedBlock[], BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader
-
create a BlockAllocationTableReader from an array of raw data blocks
- BlockAllocationTableReader() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader
-
Constructor BlockAllocationTableReader
- BlockAllocationTableWriter - Class in loci.poi.poifs.storage
-
This class manages and creates the Block Allocation Table, which is
basically a set of linked lists of block indices.
- BlockAllocationTableWriter() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableWriter
-
create a BlockAllocationTableWriter
- blockData - Variable in class loci.formats.in.ZeissLSMReader.SubBlock
-
- BlockingInputStream - Class in loci.poi.util
-
Implementation of a BlockingInputStream to provide data to
RawDataBlock that expects data in 512 byte chunks.
- BlockingInputStream(InputStream) - Constructor for class loci.poi.util.BlockingInputStream
-
- blockLength - Variable in class loci.formats.in.APNGReader.PNGInputStream
-
- blockLength - Variable in class loci.formats.in.PQBinReader
-
No of timeBins pre-loaded as a block
- blockLength - Variable in class loci.formats.in.SDTInfo
-
reserved2 now contains block (set) length.
- blockLength - Variable in class loci.formats.in.SDTReader
-
No of timeBins pre-loaded as a block
- BlockList - Interface in loci.poi.poifs.storage
-
Interface for lists of blocks that are mapped by block allocation
tables
- BlockListImpl - Class in loci.poi.poifs.storage
-
A simple implementation of BlockList
- BlockListImpl() - Constructor for class loci.poi.poifs.storage.BlockListImpl
-
Constructor BlockListImpl
- blockNo - Variable in class loci.formats.in.SDTInfo
-
Number of the block in the file.
- blockPointer - Variable in class loci.formats.in.APNGReader.PNGInputStream
-
- blockRandomised - Variable in class loci.common.CBZip2InputStream
-
- blocks - Variable in class loci.formats.FilePattern
-
List of pattern blocks for this file pattern.
- blocks - Variable in class loci.formats.in.APNGReader
-
- blocks_ - Variable in class com.sun.media.imageioimpl.common.BitFile
-
note this also indicates gif format BITFile.
- blockSize - Variable in class loci.formats.in.GIFReader
-
Block size.
- blockSize - Variable in class loci.formats.in.VolocityReader.Stack
-
- blockSize - Variable in class loci.poi.poifs.storage.BATBlock
-
- blockSize - Variable in class loci.poi.poifs.storage.DocumentBlock
-
- blockSize - Variable in class loci.poi.poifs.storage.PropertyBlock
-
- blockSize - Variable in class loci.poi.poifs.storage.RawDataBlock
-
- blockSize100k - Variable in class loci.common.CBZip2InputStream
-
always: in the range 0 ..
- blockType - Variable in class loci.formats.in.APNGReader.PNGInputStream
-
- blockType - Variable in class loci.formats.in.SDTInfo
-
See blockType defines below.
- BlockWritable - Interface in loci.poi.poifs.storage
-
An interface for persisting block storage of POIFS components.
- blue - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- blue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- blue - Variable in class loci.poi.hssf.record.PColor
-
- blue - Variable in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor
-
- BLUE_GAIN - Static variable in class loci.formats.in.CellSensReader
-
- BLUE_MIN - Static variable in class loci.plugins.in.Colorizer
-
- BLUE_OFFSET - Static variable in class loci.formats.in.CellSensReader
-
- BLUE_TO_GREEN_MIN - Static variable in class loci.plugins.in.Colorizer
-
- blueGain - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- blueOffset - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- blueOffset - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
- blueShort - Variable in class loci.formats.gui.Index16ColorModel
-
Lookup tables.
- blueX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- blueY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- blueZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- BMP - Static variable in class loci.formats.in.CellSensReader
-
- BMP_MAGIC_STRING - Static variable in class loci.formats.in.BMPReader
-
- bmpBitsPerPixel - Variable in class loci.formats.in.AVIReader
-
- bmpColorsUsed - Variable in class loci.formats.in.AVIReader
-
- bmpCompression - Variable in class loci.formats.in.AVIReader
-
- BMPConstants - Interface in com.sun.media.imageioimpl.plugins.bmp
-
- BMPImageReader - Class in com.sun.media.imageioimpl.plugins.bmp
-
This class is the Java Image IO plugin reader for BMP images.
- BMPImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
Constructs BMPImageReader from the provided
ImageReaderSpi.
- BMPImageReader.EmbeddedProgressAdapter - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPImageReader.EmbeddedProgressAdapter() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- BMPImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- BMPImageWriteParam - Class in com.sun.media.imageio.plugins.bmp
-
A subclass of ImageWriteParam for encoding images in
the BMP format.
- BMPImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Constructs a BMPImageWriteParam set to use a given
Locale and with default values for all parameters.
- BMPImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Constructs an BMPImageWriteParam object with default
values for all parameters and a null Locale.
- BMPImageWriter - Class in com.sun.media.imageioimpl.plugins.bmp
-
The Java Image IO plugin writer for encoding a binary RenderedImage into
a BMP format.
- BMPImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
Constructs BMPImageWriter based on the provided
ImageWriterSpi.
- BMPImageWriter.IIOWriteProgressAdapter - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPImageWriter.IIOWriteProgressAdapter() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter
-
- BMPImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- BMPMetadata - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- BMPMetadata(IIOMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- BMPMetadataFormat - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
-
- BMPMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources
-
- BMPReader - Class in loci.formats.in
-
BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
- BMPReader() - Constructor for class loci.formats.in.BMPReader
-
Constructs a new BMP reader.
- bmpScanLineSize - Variable in class loci.formats.in.AVIReader
-
- bmpVersion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- bmpWidth - Variable in class loci.formats.in.AVIReader
-
- bms - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
By-pass mode specifications
- BOFRecord - Class in loci.poi.hssf.record
-
Title: Beginning Of File
- BOFRecord() - Constructor for class loci.poi.hssf.record.BOFRecord
-
Constructs an empty BOFRecord with no fields set.
- BOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BOFRecord
-
Constructs a BOFRecord and sets its fields appropriately
- BogusColorSpace - Class in com.sun.media.imageioimpl.common
-
A dummy ColorSpace to enable ColorModel
for image data which do not have an innate color representation.
- BogusColorSpace(int) - Constructor for class com.sun.media.imageioimpl.common.BogusColorSpace
-
Constructs a bogus ColorSpace.
- bold - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- BOLDWEIGHT_BOLD - Static variable in class loci.poi.hssf.usermodel.HSSFFont
-
Bold boldness (bold)
- BOLDWEIGHT_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont
-
Normal boldness (not bold)
- book - Variable in class loci.poi.hssf.model.FormulaParser
-
- book - Variable in class loci.poi.hssf.usermodel.HSSFCell
-
- book - Variable in class loci.poi.hssf.usermodel.HSSFName
-
- book - Variable in class loci.poi.hssf.usermodel.HSSFRichTextString
-
- book - Variable in class loci.poi.hssf.usermodel.HSSFRow
-
reference to containing low level Workbook
- book - Variable in class loci.poi.hssf.usermodel.HSSFSheet
-
- BookBoolRecord - Class in loci.poi.hssf.record
-
Title: Save External Links record (BookBool)
- BookBoolRecord() - Constructor for class loci.poi.hssf.record.BookBoolRecord
-
- BookBoolRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BookBoolRecord
-
Constructs a BookBoolRecord and sets its fields appropriately
- BOOLEAN - Static variable in class loci.formats.in.CellSensReader
-
- BooleanAnnotation - Class in ome.xml.model
-
- BooleanAnnotation() - Constructor for class ome.xml.model.BooleanAnnotation
-
Default constructor.
- BooleanAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BooleanAnnotation
-
Constructs BooleanAnnotation recursively from an XML DOM tree.
- BooleanAnnotation(BooleanAnnotation) - Constructor for class ome.xml.model.BooleanAnnotation
-
Copy constructor.
- booleanAnnotations - Variable in class ome.xml.model.StructuredAnnotations
-
- BooleanOption - Class in loci.plugins.prefs
-
A boolean option for one of the plugins.
- BooleanOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.BooleanOption
-
Constructs a boolean option with the parameters from the given map.
- BooleanOption(String, boolean, String, String, boolean) - Constructor for class loci.plugins.prefs.BooleanOption
-
Constructs a boolean option with the given parameters.
- BoolErrRecord - Class in loci.poi.hssf.record
-
Creates new BoolErrRecord.
- BoolErrRecord() - Constructor for class loci.poi.hssf.record.BoolErrRecord
-
Creates new BoolErrRecord
- BoolErrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoolErrRecord
-
Constructs a BoolErr record and sets its fields appropriately.
- BoolPtg - Class in loci.poi.hssf.record.formula
-
Boolean (boolean)
Stores a (java) boolean value in a formula.
- BoolPtg() - Constructor for class loci.poi.hssf.record.formula.BoolPtg
-
- BoolPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.BoolPtg
-
- BoolPtg(String) - Constructor for class loci.poi.hssf.record.formula.BoolPtg
-
- BORDER - Static variable in class loci.plugins.shortcut.ShortcutPanel
-
Number of pixels for window border.
- border - Variable in class loci.poi.hssf.record.DatRecord
-
- BORDER_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
dash-dot border
- BORDER_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
dash-dot-dot border
- BORDER_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
dash border
- BORDER_DOTTED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
hair-line border
- BORDER_DOUBLE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
double-line border
- BORDER_HAIR - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
dot border
- BORDER_MEDIUM - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Medium border
- BORDER_MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
medium dash-dot border
- BORDER_MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
medium dash-dot-dot border
- BORDER_MEDIUM_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Medium dashed border
- BORDER_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
No border
- BORDER_SLANTED_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
slanted dash-dot border
- BORDER_THICK - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Thick border
- BORDER_THIN - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Thin border
- BORDER_TYPE_REGULAR - Static variable in class loci.poi.hssf.record.FrameRecord
-
- BORDER_TYPE_SHADOW - Static variable in class loci.poi.hssf.record.FrameRecord
-
- bordL - Variable in class loci.formats.in.SDTInfo
-
- bordU - Variable in class loci.formats.in.SDTInfo
-
- bottomHalfSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest
-
- bottomLeftQuarterSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest
-
- BottomMargin - Static variable in class loci.poi.hssf.model.Sheet
-
- BottomMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet
-
- bottomMargin - Variable in class ome.jxr.parser.DatastreamParser
-
Deprecated.
- BottomMarginRecord - Class in loci.poi.hssf.record
-
Record for the bottom margin.
- BottomMarginRecord() - Constructor for class loci.poi.hssf.record.BottomMarginRecord
-
- BottomMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BottomMarginRecord
-
Constructs a BottomMargin record and sets its fields appropriately.
- bottomRightQuarterSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest
-
- BoundSheetRecord - Class in loci.poi.hssf.record
-
Title: Bound Sheet Record (aka BundleSheet)
- BoundSheetRecord() - Constructor for class loci.poi.hssf.record.BoundSheetRecord
-
- BoundSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoundSheetRecord
-
Constructs a BoundSheetRecord and sets its fields appropriately
- boundsheets - Variable in class loci.poi.hssf.model.Workbook
-
holds the "boundsheet" records (aka bundlesheet) so that they can have their
reference to their "BOF" marker
- boundValues - Variable in class loci.formats.services.MDBServiceImpl
-
- boutT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The raw bit output used, for each thread
- Box - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to create the box of JP2 file format.
- Box(int, int, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Constructs a Box instance using the provided
the box type and the box content in byte array format.
- Box(int, int, long, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Constructs a Box instance using the provided
the box type, the box extra length, and the box content in byte
array format.
- Box(ImageInputStream, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Constructs a Box instance from the provided
ImageInputStream at the specified position.
- Box(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Constructs a Box from an "unknown" Node.
- BOX_SIZE - Static variable in class loci.formats.in.FakeReader
-
- boxClasses - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
A Hashtable contains the class names for each type of the boxes.
- boxes - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
The boxes of JP2 file used as meta data, i.
- boxes - Variable in class loci.plugins.in.SeriesDialog
-
- bpc - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
Bits per component
- BPC_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
base length of Bits Per Component box
- bpcVaries - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
Flag indicating whether number of bits per component varies
- bpixels - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- bpos - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
The position of the next bit to read in the bit buffer (0 means
empty, 8 full)
- bpos - Variable in class jj2000.j2k.entropy.decoder.ByteToBitInput
-
The position of the next bit to get from the byte buffer.
- bpos - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput
-
The position of the next bit to put in the bit buffer.
- bpp - Variable in class loci.formats.in.BaseZeissReader
-
Number of bytes per pixel.
- bpp - Variable in class loci.formats.in.BMPReader
-
Number of bits per pixel.
- bpp - Variable in class loci.formats.in.MIASReader
-
- bpp - Variable in class loci.formats.in.SPCReader
-
- bpp - Variable in class loci.formats.out.CellH5Writer
-
- bpp - Variable in class loci.tests.testng.OpenBytesPerformanceTest
-
- branch - Variable in class loci.formats.codec.HuffmanCodec.Decoder
-
- brand - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
The element values.
- breader - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- BreakMap - Variable in class loci.poi.hssf.record.PageBreakRecord
-
- breaks - Variable in class loci.poi.hssf.record.PageBreakRecord
-
- BRICKS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- BRICKS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Brick-like layout
- BRIGHT_FIELD - Static variable in class loci.formats.in.LegacyND2Reader
-
- BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader
-
- BRIGHTNESS_VALUE - Static variable in class loci.formats.tiff.IFD
-
- brokenNotes - Variable in class loci.formats.in.BioRadReader
-
- BrowserOptionsWindow - Class in loci.plugins.util
-
Extension of JFrame that allows the user to adjust caching settings.
- BrowserOptionsWindow(String, Cache, String[]) - Constructor for class loci.plugins.util.BrowserOptionsWindow
-
- BrukerReader - Class in loci.formats.in
-
BrukerReader is the file format reader for Bruker MRI files.
- BrukerReader() - Constructor for class loci.formats.in.BrukerReader
-
Constructs a new Bruker reader.
- bsBuff - Variable in class loci.common.CBZip2InputStream
-
- bsGetBit() - Method in class loci.common.CBZip2InputStream
-
- bsGetInt() - Method in class loci.common.CBZip2InputStream
-
- bsGetUByte() - Method in class loci.common.CBZip2InputStream
-
- bsLive - Variable in class loci.common.CBZip2InputStream
-
- bspos - Variable in class loci.poi.hssf.model.WorkbookRecordList
-
- bsR(int) - Method in class loci.common.CBZip2InputStream
-
- BSTORE_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
-
- bsWriter - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
The bit-stream writer
- BT_DIB - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_EMF - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_ERROR - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_JPEG - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_PICT - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_PNG - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_UNKNOWN - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_WMF - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BUBBLE_SERIES_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- BUBBLE_SERIES_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- BUBBLE_SERIES_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- BUBBLE_SERIES_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- bucketAbsoluteOffsets - Variable in class loci.poi.hssf.record.SSTRecord
-
Offsets from the beginning of the SST record (even across continuations)
- bucketAbsoluteOffsets - Variable in class loci.poi.hssf.record.SSTSerializer
-
Offsets from the beginning of the SST record (even across continuations)
- bucketRelativeOffsets - Variable in class loci.poi.hssf.record.SSTRecord
-
Offsets relative the start of the current SST or continue record
- bucketRelativeOffsets - Variable in class loci.poi.hssf.record.SSTSerializer
-
Offsets relative the start of the current SST or continue record
- buf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The line buffer.
- buf - Variable in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
The buffer where we store the data
- buf - Variable in class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
The byte array containing the data
- buf - Variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
The buffer where the data is stored
- buf - Variable in class jj2000.j2k.image.input.ImgReaderPGM
-
The line buffer.
- buf - Variable in class jj2000.j2k.util.ISRandomAccessIO
-
- buf - Variable in class loci.formats.codec.BitWriter
-
Deprecated.
Buffer storing all bits written thus far.
- BUF_DEF_LEN - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
The default initial buffer size
- BUF_INC - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
The buffer increase size
- buffer - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- buffer - Variable in class loci.common.ByteArrayHandle
-
Backing ByteBuffer.
- buffer - Variable in class loci.common.NIOFileHandle
-
The buffer itself.
- buffer(long, int) - Method in class loci.common.NIOFileHandle
-
Aligns the NIO buffer, maps it if it is not currently and sets all
relevant positions and offsets.
- buffer_ - Variable in class com.sun.media.imageioimpl.common.BitFile
-
- BUFFER_SIZE - Static variable in class loci.formats.in.NativeND2Reader
-
- BUFFER_SIZE - Static variable in class loci.formats.in.ZeissCZIReader
-
- BufferedImageReader - Class in loci.formats.gui
-
A reader wrapper for reading image planes as BufferedImage objects.
- BufferedImageReader() - Constructor for class loci.formats.gui.BufferedImageReader
-
Constructs a BufferedImageReader around a new image reader.
- BufferedImageReader(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageReader
-
Constructs a BufferedImageReader with the given reader.
- BufferedImageSource - Class in loci.formats.gui
-
Retrieves BufferedImages from a data source using Bio-Formats.
- BufferedImageSource(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageSource
-
- BufferedImageWriter - Class in loci.formats.gui
-
A writer wrapper for writing image planes from BufferedImage objects.
- BufferedImageWriter() - Constructor for class loci.formats.gui.BufferedImageWriter
-
Constructs a BufferedImageWriter around a new image writer.
- BufferedImageWriter(IFormatWriter) - Constructor for class loci.formats.gui.BufferedImageWriter
-
Constructs a BufferedImageWriter with the given writer.
- BufferedRandomAccessFile - Class in jj2000.j2k.io
-
This class defines a Buffered Random Access File.
- BufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
-
Constructor.
- BufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
-
Constructor.
- BufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
-
Constructor.
- BufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
-
Constructor.
- bufferSize - Variable in class loci.common.NIOFileHandle
-
The buffer size.
- bufferStartPosition - Variable in class loci.common.NIOFileHandle
-
The absolute position of the start of the buffer.
- bufLength - Variable in class loci.formats.in.SPCReader
-
- bufSize(int, int, int) - Static method in class org.libjpegturbo.turbojpeg.TJ
-
Returns the maximum size of the buffer (in bytes) required to hold a JPEG
image with the given width and height, and level of chrominance
subsampling.
- bufSizeYUV(int, int, int) - Static method in class org.libjpegturbo.turbojpeg.TJ
-
Returns the size of the buffer (in bytes) required to hold a YUV planar
image with the given width, height, and level of chrominance subsampling.
- bugaddr - Static variable in class jj2000.j2k.JJ2KInfo
-
The bug reporting e-mail address
- BUILD - Static variable in class loci.poi.hssf.record.BOFRecord
-
suggested default 0x10d3
- BUILD_YEAR - Static variable in class loci.poi.hssf.record.BOFRecord
-
suggested default 0x07CC (1996)
- buildAndWriteLayers() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
This method builds all the bit stream layers and then writes them to
the output bit stream.
- buildCondition(Object, int, Object) - Method in class mdbtools.dbengine.Tests
-
- buildDB() - Method in class mdbtools.dbengine.Tests
-
- buildEquation(Object, int, Object) - Method in class mdbtools.dbengine.Tests
-
- BUILDER - Static variable in class loci.formats.meta.OriginalMetadataAnnotation
-
- builder - Variable in class ome.xml.meta.AbstractOMEXMLMetadata
-
- buildExtensions() - Method in class loci.plugins.macro.MacroFunctions
-
Builds the list of extensions, using reflection,
from public methods of this class.
- buildFileChooser(IFormatHandler) - Static method in class loci.formats.gui.GUITools
-
Constructs a file chooser for the given file format handler.
- buildFileChooser(IFormatHandler, boolean) - Static method in class loci.formats.gui.GUITools
-
Constructs a file chooser for the given file format handler.
- buildFileChooser(FileFilter[]) - Static method in class loci.formats.gui.GUITools
-
Builds a file chooser with the given file filters,
as well as an "All supported file types" combo filter.
- buildFileChooser(FileFilter[], boolean) - Static method in class loci.formats.gui.GUITools
-
Builds a file chooser with the given file filters, as well as an "All
supported file types" combo filter, if one is not already specified.
- buildFileFilters(IFormatHandler) - Static method in class loci.formats.gui.GUITools
-
Constructs a list of file filters for the given file format handler.
- buildFiles(String, int, List<String>) - Method in class loci.formats.FilePattern
-
- buildFontCharactersProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
-
- buildFontHeightProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
-
- buildFontWidthsProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
-
- buildFunction(Function, Object) - Method in class mdbtools.dbengine.Tests
-
- buildFunction(Aggregate, Object) - Method in class mdbtools.dbengine.Tests
-
- buildJoin(Object, int, Table, Equation) - Method in class mdbtools.dbengine.Tests
-
- buildPalette() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- buildSelect(Object[], Object[], Object, FQColumn[], Object[][]) - Method in class mdbtools.dbengine.Tests
-
- buildTestCases() - Method in class mdbtools.dbengine.Tests
-
- buildTIFFList(int) - Method in class loci.formats.in.MicromanagerReader
-
- buildTIFFList(int, String) - Method in class loci.formats.in.MicromanagerReader
-
Populate the list of TIFF files using the given file name as a pattern.
- buildTime - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
The wall time for the building of layers.
- buildTypes() - Static method in class loci.formats.in.DicomReader
-
Assemble the data dictionary.
- BUILTIN_AUTO_ACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_AUTO_CLOSE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_AUTO_DEACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_AUTO_OPEN - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_CONSOLIDATE_AREA - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_CRITERIA - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_DATA_FORM - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_DATABASE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_PRINT_AREA - Static variable in class loci.poi.hssf.record.NameRecord
-
- BUILTIN_PRINT_TITLE - Static variable in class loci.poi.hssf.record.NameRecord
-
- BUILTIN_RECORDER - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_SHEET_TITLE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- builtinFormats - Static variable in class loci.poi.hssf.usermodel.HSSFDataFormat
-
- BurleighReader - Class in loci.formats.in
-
BurleighReader is the file format reader for Burleigh .img files.
- BurleighReader() - Constructor for class loci.formats.in.BurleighReader
-
Constructs a new Burleigh reader.
- bypass - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Uses the lazy coding mode with the entropy coder.
- BYTE - Static variable in class loci.formats.in.GatanReader
-
- BYTE_COUNT_OFFSET - Static variable in class loci.formats.out.QTWriter
-
Seek to this offset to update the total number of pixel bytes.
- BYTE_ORDER_ASSERTION - Static variable in class loci.poi.hpsf.PropertySet
-
The "byteOrder" field must equal this value.
- BYTE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
-
- ByteArrayHandle - Class in loci.common
-
A wrapper for a byte array that implements the IRandomAccess interface.
- ByteArrayHandle(byte[]) - Constructor for class loci.common.ByteArrayHandle
-
Creates a random access byte stream to read from, and
write to, the bytes specified by the byte[] argument.
- ByteArrayHandle(ByteBuffer) - Constructor for class loci.common.ByteArrayHandle
-
- ByteArrayHandle(int) - Constructor for class loci.common.ByteArrayHandle
-
Creates a random access byte stream to read from, and write to.
- ByteArrayHandle() - Constructor for class loci.common.ByteArrayHandle
-
Creates a random access byte stream to write to a byte array.
- byteArraySet(byte[], byte) - Static method in class jj2000.j2k.util.ArrayUtil
-
Reinitializes a byte array to the given value in an optimized way.
- ByteArraySource - Class in loci.formats.cache
-
Retrieves byte arrays from a data source
(e.g., a file) using Bio-Formats.
- ByteArraySource(IFormatReader) - Constructor for class loci.formats.cache.ByteArraySource
-
Constructs a byte array source from the given Bio-Formats reader.
- ByteArraySource(String) - Constructor for class loci.formats.cache.ByteArraySource
-
Constructs a byte array source that draws from the given file.
- bytebuf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- byteBuffer - Variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
A ByteBuffer used for writing to the channel.
- byteBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
Buffer of bytes containing the part of the file that is currently being
accessed
- byteBuffer - Variable in class loci.formats.codec.BitBuffer
-
Deprecated.
- byteBufferChanged - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
Boolean keeping track of whether the byte buffer has been changed since
it was read.
- byteBufferProvider - Variable in class loci.common.NIOFileHandle
-
Provider class for NIO byte buffers, allocated or memory mapped.
- byteCount - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The number of bytes of data from the source
ImageInputStream to be decompressed.
- ByteField - Class in loci.poi.util
-
representation of a byte (8-bit) field at a fixed location within a
byte array
- ByteField(int) - Constructor for class loci.poi.util.ByteField
-
construct the ByteField with its offset into its containing
byte array and a default value of 0
- ByteField(int, byte) - Constructor for class loci.poi.util.ByteField
-
construct the ByteField with its offset into its containing
byte array and initialize its value
- ByteField(int, byte[]) - Constructor for class loci.poi.util.ByteField
-
Construct the ByteField with its offset into its containing
byte array and initialize its value from its byte array
- ByteField(int, byte, byte[]) - Constructor for class loci.poi.util.ByteField
-
construct the ByteField with its offset into its containing
byte array, initialize its value, and write its value to its
byte array
- byteIn() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
This function gets one byte of compressed bits from the in-stream.
- ByteInputBuffer - Class in jj2000.j2k.entropy.decoder
-
This class provides a byte input facility from byte buffers.
- ByteInputBuffer(byte[]) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
Creates a new byte array input stream that reads data from the
specified byte array.
- ByteInputBuffer(byte[], int, int) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
Creates a new byte array input stream that reads data from the
specified byte array.
- byteOffset - Variable in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor
-
- byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
-
- byteOrder - Variable in class loci.poi.hpsf.PropertySet
-
- byteOrder - Variable in class org.libjpegturbo.turbojpeg.TJCompressor
-
- byteOrder - Variable in class org.libjpegturbo.turbojpeg.TJDecompressor
-
- byteOrdering - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
- byteOut() - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
This function puts one byte of compressed bits in the out out stream.
- ByteOutputBuffer - Class in jj2000.j2k.entropy.encoder
-
This class provides a buffering output stream similar to
ByteArrayOutputStream, with some additional methods.
- ByteOutputBuffer() - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
Creates a new byte array output stream.
- ByteOutputBuffer(int) - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
Creates a new byte array output stream, with a buffer capacity
of the specified size, in bytes.
- bytePointer - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- bytes - Variable in class loci.formats.in.OBFReader.Frame
-
- bytes - Variable in class loci.formats.tiff.TiffSaver
-
Output bytes.
- bytes - Variable in class loci.poi.hpsf.ClassID
-
The bytes making out the class ID in correct order,
i.e.
- BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants
-
The number of bytes in each IFD entry.
- BYTES_PER_PIXEL - Static variable in class ome.specification.XMLMockObjects
-
The number of bytes per pixels.
- bytesFromReader(IFormatReader) - Method in class loci.formats.Memoizer.RandomAccessDeser
-
- bytesPerAxis - Variable in class loci.formats.in.LeicaHandler
-
- bytesPerElement - Variable in enum loci.formats.tiff.IFDType
-
Number of bytes per element of this type.
- bytesPerLine - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- bytesPerLine - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- bytesPerLine - Variable in class loci.formats.in.PCXReader
-
Number of bytes per scan line - may be different than image width.
- bytesPerPixel - Variable in class loci.formats.in.AmiraReader.ASCII
-
- bytesPerPixel - Variable in class loci.formats.in.GatanReader
-
- bytesPerPixel - Variable in class loci.formats.in.OpenlabRawReader
-
Number of bytes per pixel.
- bytesPerPixel - Variable in class loci.formats.out.AVIWriter
-
- bytesPerPixel - Variable in class loci.tests.testng.Jpeg2000GrindTest
-
- bytesPerPlane - Variable in class loci.formats.in.AVIReader
-
- bytesToDouble(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a double.
- bytesToDouble(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array beyond the given
offset to a double.
- bytesToDouble(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array to a double.
- bytesToDouble(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a double.
- bytesToDouble(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array beyond the given
offset to a double.
- bytesToDouble(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array to a double.
- bytesToFloat(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a float.
- bytesToFloat(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array beyond a given
offset to a float.
- bytesToFloat(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array to a float.
- bytesToFloat(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond a given
offset to a float.
- bytesToFloat(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array beyond a given
offset to a float.
- bytesToFloat(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array to a float.
- bytesToHex(byte[]) - Static method in class loci.common.DataTools
-
Translates the given byte array into a String of hexadecimal digits.
- bytesToInt(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to an int.
- bytesToInt(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array beyond the given
offset to an int.
- bytesToInt(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array to an int.
- bytesToInt(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to an int.
- bytesToInt(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array beyond the given
offset to an int.
- bytesToInt(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array to an int.
- bytesToLong(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a long.
- bytesToLong(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array beyond the given
offset to a long.
- bytesToLong(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array to a long.
- bytesToLong(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a long.
- bytesToLong(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array beyond the given
offset to a long.
- bytesToLong(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array to a long.
- bytesToShort(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a short.
- bytesToShort(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 2 bytes of a byte array beyond the given
offset to a short.
- bytesToShort(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 2 bytes of a byte array to a short.
- bytesToShort(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array byond the given
offset to a short.
- bytesToShort(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 2 bytes of a byte array byond the given
offset to a short.
- bytesToShort(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 2 bytes of a byte array to a short.
- byteStream - Variable in class loci.common.xml.LSInputI
-
- byteTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
- ByteToBitInput - Class in jj2000.j2k.entropy.decoder
-
This class provides an adapter to perform bit based input on byte based
output obejcts that inherit from a 'ByteInputBuffer' class.
- ByteToBitInput(ByteInputBuffer) - Constructor for class jj2000.j2k.entropy.decoder.ByteToBitInput
-
Instantiates a new 'ByteToBitInput' object that uses 'in' as the
underlying byte based input.
- byteValue() - Method in class loci.formats.tiff.TiffRational
-
Returns the value of the specified number as a byte.
- ByteVector - Class in loci.formats.codec
-
A growable array of bytes.
- ByteVector() - Constructor for class loci.formats.codec.ByteVector
-
- ByteVector(int) - Constructor for class loci.formats.codec.ByteVector
-
- ByteVector(byte[]) - Constructor for class loci.formats.codec.ByteVector
-
- BZip2Handle - Class in loci.common
-
StreamHandle implementation for reading from BZip2-compressed files
or byte arrays.
- BZip2Handle(String) - Constructor for class loci.common.BZip2Handle
-
Construct a new BZip2Handle corresponding to the given file.
- c - Variable in class jj2000.j2k.entropy.decoder.MQDecoder
-
The current bit code
- c - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The current bit code
- c - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
The component on which to compress
- C - Static variable in class loci.formats.in.CellSensReader
-
- c - Variable in class loci.formats.in.LeicaSCNReader.Dimension
-
- c - Variable in class loci.formats.in.MicromanagerReader.Index
-
- c - Variable in class loci.formats.in.OperettaReader.Plane
-
- c - Variable in class loci.formats.tools.AmiraParameters
-
- c - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable
-
- C01_MAGIC_BYTES - Static variable in class loci.formats.in.CellomicsReader
-
- C_AXIS - Static variable in class loci.formats.AxisGuesser
-
Axis type for channels.
- C_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- C_PREFIXES - Static variable in class loci.formats.AxisGuesser
-
Prefixes indicating channel dimension.
- C_STRING - Static variable in class loci.formats.in.SDTInfo
-
- cache - Static variable in class loci.common.CaseInsensitiveLocation
-
- cache - Variable in class loci.common.CaseInsensitiveLocation.Cache
-
Mapping of directory names to directory content, the content being
a mapping of case insensitive name to case sensitive (real) name
on disc.
- Cache - Class in loci.formats.cache
-
Cache provides a means of managing subsets of large collections of image
planes in memory.
- Cache(ICacheStrategy, ICacheSource, boolean) - Constructor for class loci.formats.cache.Cache
-
Constructs an object cache with the given cache strategy and source.
- cache - Variable in class loci.formats.cache.Cache
-
Master array containing cached objects.
- cache - Variable in class loci.formats.cache.CacheUpdater
-
- cache - Variable in class loci.formats.gui.CacheComponent
-
The cache that this component controls.
- cache - Variable in class loci.formats.gui.CacheIndicator
-
- cache - Variable in class loci.plugins.util.BFVirtualStack
-
- CacheComponent - Class in loci.formats.gui
-
GUI component for managing a cache.
- CacheComponent(Cache, String[]) - Constructor for class loci.formats.gui.CacheComponent
-
Creates a cache GUI component.
- CacheComponent(Cache, String[], String) - Constructor for class loci.formats.gui.CacheComponent
-
Creates a cache GUI component with the ability to change between the
various source types (mainly for debugging purposes).
- CacheConsole - Class in loci.formats.tools
-
CacheConsole provides an interactive interpreter for
testing the Bio-Formats caching implementation.
- CacheConsole() - Constructor for class loci.formats.tools.CacheConsole
-
- cachedDecoders - Variable in class loci.formats.codec.HuffmanCodec
-
- cacheDirectoryListings(boolean) - Static method in class loci.common.Location
-
Turn cacheing of directory listings on or off.
- cachedTileBuffer - Variable in class loci.formats.in.MIASReader
-
Cached tile buffer to avoid re-allocations when reading tiles.
- cachedTileBuffer - Variable in class loci.formats.tiff.TiffParser
-
Cached tile buffer to avoid re-allocations when reading tiles.
- CacheEvent - Class in loci.formats.cache
-
A event indicating a cache update.
- CacheEvent(Object, int) - Constructor for class loci.formats.cache.CacheEvent
-
Constructs a cache event.
- CacheEvent(Object, int, int) - Constructor for class loci.formats.cache.CacheEvent
-
Constructs a cache event.
- CacheException - Exception in loci.formats.cache
-
CacheException is the exception thrown when something
goes wrong performing a cache operation.
- CacheException() - Constructor for exception loci.formats.cache.CacheException
-
- CacheException(String) - Constructor for exception loci.formats.cache.CacheException
-
- CacheException(String, Throwable) - Constructor for exception loci.formats.cache.CacheException
-
- CacheException(Throwable) - Constructor for exception loci.formats.cache.CacheException
-
- CacheIndicator - Class in loci.formats.gui
-
Indicator GUI component showing which planes are currently in the cache
for a given dimensional axis at a particular dimensional position.
- CacheIndicator(Cache, int) - Constructor for class loci.formats.gui.CacheIndicator
-
Creates a new cache indicator for the given cache.
- CacheIndicator(Cache, int, Component, int, int) - Constructor for class loci.formats.gui.CacheIndicator
-
Creates a new cache indicator.
- CacheListener - Interface in loci.formats.cache
-
A listener for cache updates.
- cacheListings - Static variable in class loci.common.Location
-
- cacheNanos - Static variable in class loci.common.Location
-
- CacheReporter - Interface in loci.formats.cache
-
Interface for components capable of reporting cache updates.
- CacheSource - Class in loci.formats.cache
-
Superclass of cache sources that retrieve image planes
from a data source (e.g., a file) using Bio-Formats.
- CacheSource(IFormatReader) - Constructor for class loci.formats.cache.CacheSource
-
Constructs a cache source from the given Bio-Formats reader.
- CacheSource(String) - Constructor for class loci.formats.cache.CacheSource
-
Constructs a cache source that draws from the given file.
- CacheStrategy - Class in loci.formats.cache
-
Superclass of cache strategies.
- CacheStrategy(int[]) - Constructor for class loci.formats.cache.CacheStrategy
-
Constructs a cache strategy.
- cacheUpdated(CacheEvent) - Method in interface loci.formats.cache.CacheListener
-
Called when cache is updated.
- cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheComponent
-
Updates GUI to match latest cache state.
- cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheIndicator
-
- CacheUpdater - Class in loci.formats.cache
-
Thread responsible for updating the cache
(loading and dropping planes) in the background.
- CacheUpdater(Cache) - Constructor for class loci.formats.cache.CacheUpdater
-
- calcBasisWaveForms(float[][]) - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Calculates the basis waveform of the first leaf for which the
L2-norm has not been calculated yet.
- CalcCountRecord - Class in loci.poi.hssf.record
-
Title: Calc Count Record
Description: Specifies the maximum times the gui should perform a formula
recalculation.
- CalcCountRecord() - Constructor for class loci.poi.hssf.record.CalcCountRecord
-
- CalcCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcCountRecord
-
Constructs a CalcCountRecord and sets its fields appropriately
- calcExtSSTRecordSize() - Method in class loci.poi.hssf.record.SSTRecord
-
Calculates the size in bytes of the EXTSST record as it would be if the
record was serialized.
- calcL2Norms() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Calculates the L2-norm of the sythesis waveforms of every leaf
in the tree.
- calcMaxMagBits(J2KImageWriteParamJava) - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
Calculates the maximum amount of magnitude bits for each
tile-component, and stores it in the 'maxMagBits' array.
- calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Calculates the bitdepths of the transformed components, given the
bitdepth of the un-transformed components and the component
tranformation type.
- calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Calculates the bitdepths of the transformed components, given the
bitdepth of the un-transformed components and the component
tranformation type.
- CalcModeRecord - Class in loci.poi.hssf.record
-
Title: Calc Mode Record
- CalcModeRecord() - Constructor for class loci.poi.hssf.record.CalcModeRecord
-
- CalcModeRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcModeRecord
-
Constructs a CalcModeRecord and sets its fields appropriately
- calcOnLoad - Variable in class loci.poi.hssf.record.FormulaRecord
-
- calcPhotons - Variable in class loci.formats.in.SDTInfo
-
No of photons.
- calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Calculates the parameters of the SubbandAn objects that depend on the
Quantizer.
- calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Calculates the parameters of the SubbandAn objects that depend on the
Quantizer.
- calcSize() - Method in class loci.poi.hpsf.MutableSection
-
Calculates the section's size.
- calcSize(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock
-
Calculate the storage size of a set of SmallDocumentBlocks
- calcSkipMSBP(CBlkWTData, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Calculates the number of magnitude bit-planes that are to be skipped,
because they are non-significant.
- calculateDimensions() - Method in class loci.formats.in.ZeissCZIReader
-
- calculateIFDOffset() - Method in class ome.jxr.parser.FileParser
-
Deprecated.
- calculateStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock
-
Calculate how many BATBlocks are needed to hold a specified
number of BAT entries.
- calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock
-
Calculate how many XBATBlocks are needed to hold a specified
number of BAT entries.
- calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.HeaderBlockWriter
-
For a given number of BAT blocks, calculate how many XBAT
blocks will be needed
- calibratedMagnification - Variable in class ome.xml.model.Objective
-
- CALIBRATION - Static variable in class loci.formats.in.OpenlabReader
-
- calibrationTable - Variable in class loci.plugins.util.BFVirtualStack
-
- calibrationUnit - Variable in class loci.formats.in.TiffReader
-
- Calibrator - Class in loci.plugins.in
-
Logic for calibrating images.
- Calibrator(ImportProcess) - Constructor for class loci.plugins.in.Calibrator
-
- CALLER - Static variable in class loci.common.LogbackTools
-
- callLegacyReader() - Method in class loci.formats.DelegateReader
-
- CALLOUT__CALLOUTACCENTBAR - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTANGLE - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTDROPSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTDROPTYPE - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTLENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTMINUSX - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTMINUSY - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTTEXTBORDER - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTTYPE - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__DROPAUTO - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__ISCALLOUT - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__LENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__XYCALLOUTGAP - Static variable in class loci.poi.ddf.EscherProperties
-
- CAMERA_GAIN - Static variable in class loci.formats.in.CellSensReader
-
- CAMERA_GAMMA - Static variable in class loci.formats.in.CellSensReader
-
- CAMERA_OFFSET - Static variable in class loci.formats.in.CellSensReader
-
- CAMERA_SERIAL_SETTING - Static variable in class loci.formats.in.FluoviewReader
-
- cameraIDs - Variable in class loci.formats.in.FlexReader
-
- cameraMode - Variable in class loci.formats.in.MicromanagerReader.Position
-
- cameraModel - Variable in class loci.formats.in.ND2Handler
-
- cameraName - Variable in class loci.formats.in.SimplePCITiffReader
-
- cameraName - Variable in class loci.formats.in.SISReader
-
- cameraRef - Variable in class loci.formats.in.MicromanagerReader.Position
-
- cameraRefs - Variable in class loci.formats.in.FlexReader
-
- cameraType - Variable in class loci.formats.in.SimplePCITiffReader
-
- CAN_GROUP - Static variable in class loci.formats.FormatTools
-
- CAN_GROUP - Static variable in interface loci.formats.IFormatReader
-
- canAdjustDimensions - Variable in class loci.formats.in.ND2Handler
-
- cancel - Variable in class loci.plugins.in.ImportProcess
-
Whether the process has been canceled.
- cancel() - Method in class loci.plugins.in.ImportProcess
-
Cancels the import process.
- canceled - Variable in class loci.plugins.LociImporter
-
Flag indicating whether last operation was canceled.
- canceled - Variable in class loci.plugins.Slicer
-
Flag indicating whether last operation was canceled.
- canceled - Variable in class loci.plugins.Updater
-
Flag indicating whether last operation was canceled.
- canChangePattern() - Method in class loci.formats.FileStitcher
-
- canCloseReader - Variable in class loci.formats.gui.ImageViewer
-
- canCreatePalette(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Returns true if PaletteBuilder is able to create
palette for given image type.
- canCreatePalette(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Returns true if PaletteBuilder is able to create
palette for given rendered image.
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
-
- canDoQT() - Method in class loci.formats.gui.LegacyQTTools
-
Whether QuickTime is available to this JVM.
- canDoStacks() - Method in class loci.formats.FormatWriter
-
- canDoStacks() - Method in interface loci.formats.IFormatWriter
-
Reports whether the writer can save multiple images to a single file.
- canDoStacks() - Method in class loci.formats.ImageWriter
-
- canDoStacks() - Method in class loci.formats.out.APNGWriter
-
- canDoStacks() - Method in class loci.formats.out.AVIWriter
-
- canDoStacks() - Method in class loci.formats.out.CellH5Writer
-
- canDoStacks() - Method in class loci.formats.out.ICSWriter
-
- canDoStacks() - Method in class loci.formats.out.JavaWriter
-
- canDoStacks() - Method in class loci.formats.out.JPEG2000Writer
-
Overridden to indicate that stacks are not supported.
- canDoStacks() - Method in class loci.formats.out.LegacyQTWriter
-
- canDoStacks() - Method in class loci.formats.out.OMEXMLWriter
-
- canDoStacks() - Method in class loci.formats.out.QTWriter
-
- canDoStacks() - Method in class loci.formats.out.TiffWriter
-
- canDoStacks() - Method in class loci.formats.out.V3DrawWriter
-
- canDoStacks() - Method in class loci.formats.out.WlzWriter
-
- canDoStacks() - Method in class loci.formats.WriterWrapper
-
- canDoUpgradeCheck() - Method in class loci.formats.UpgradeChecker
-
Return whether or not we are ever allowed to perform an upgrade check.
- canEncodeImage(ImageWriter, ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Checks that the provided ImageWriter can encode
the provided ImageTypeSpecifier or not.
- canEncodeImage(ImageWriter, ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Checks that the provided ImageWriter can encode
the provided ColorModel and SampleModel.
- canEncodeImage(int, ColorModel, SampleModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- canEncodeImage(int, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
-
- canFitInMemory(long) - Static method in class loci.tests.testng.TestTools
-
Returns true if a byte buffer of the given size will fit in memory.
- canImport(JComponent, DataFlavor[]) - Method in class loci.plugins.shortcut.ShortcutTransferHandler
-
- canInsertEmpty(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canInsertImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canLookForND - Variable in class loci.formats.in.MetamorphReader
-
- canMerge() - Method in class loci.formats.ChannelMerger
-
Determines whether the channels in the file can be merged.
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat
-
- CANNOT_GROUP - Static variable in class loci.formats.FormatTools
-
- CANNOT_GROUP - Static variable in interface loci.formats.IFormatReader
-
- CANON_TAG - Static variable in class loci.formats.in.DNGReader
-
- CanonRawReader - Class in loci.formats.in
-
CanonRawReader is the file format reader for Canon RAW files.
- CanonRawReader() - Constructor for class loci.formats.in.CanonRawReader
-
Constructs a new Canon RAW reader.
- canParse - Variable in class loci.formats.in.LeicaHandler
-
- canRead() - Method in class loci.common.Location
-
If the underlying location is a URL, this method will return true if
the URL exists.
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- canReplacePixels(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canUseBankDataDirectly(WritableRaster, int, Class<? extends DataBuffer>) - Static method in class loci.formats.gui.AWTImageTools
-
Whether we can return the data buffer's bank data
without performing any copy or conversion operations.
- canUsePrevious - Variable in class loci.formats.in.NativeQTReader
-
Flag indicating whether we can safely use prevPixels.
- CANVAS_COLOR_1 - Static variable in class loci.formats.in.CellSensReader
-
- CANVAS_COLOR_2 - Static variable in class loci.formats.in.CellSensReader
-
- canWrite() - Method in class loci.common.Location
-
If the underlying location is a URL, this method will always return false.
- canWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- CAPTURE_EDITOR_DATA - Static variable in class loci.formats.in.NikonReader
-
- CAPTURE_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CaseInsensitiveLocation - Class in loci.common
-
Case insensitive variant of Location.
- CaseInsensitiveLocation(String) - Constructor for class loci.common.CaseInsensitiveLocation
-
- CaseInsensitiveLocation(Location) - Constructor for class loci.common.CaseInsensitiveLocation
-
- CaseInsensitiveLocation(File) - Constructor for class loci.common.CaseInsensitiveLocation
-
- CaseInsensitiveLocation(String, String) - Constructor for class loci.common.CaseInsensitiveLocation
-
- CaseInsensitiveLocation(CaseInsensitiveLocation, String) - Constructor for class loci.common.CaseInsensitiveLocation
-
- CaseInsensitiveLocation.Cache - Class in loci.common
-
Caching for CaseInsensitiveLocation.
- CaseInsensitiveLocation.Cache() - Constructor for class loci.common.CaseInsensitiveLocation.Cache
-
The constructor.
- cast(Class<?>) - Method in class loci.formats.ClassList
-
Cast the given class to something that extends the base class.
- cat(byte[][]) - Static method in class loci.poi.hpsf.Util
-
Concatenates the contents of several byte arrays into a
single one.
- cat - Variable in class loci.poi.util.SystemOutLogger
-
- Catalog - Class in mdbtools.libmdb
-
- Catalog() - Constructor for class mdbtools.libmdb.Catalog
-
- catalog - Variable in class mdbtools.libmdb.MdbHandle
-
- category - Variable in class loci.formats.in.BaseZeissReader.Tag
-
- category - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling
-
- category - Variable in class loci.formats.in.ZeissTIFFHandler.Tag
-
- CATEGORY_DATA_TYPE_ALL_TEXT_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
- CATEGORY_DATA_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- CATEGORY_DATA_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- CATEGORY_DATA_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- CATEGORY_DATA_TYPE_SHOW_LABELS_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
- CATEGORY_DATA_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- CATEGORY_DATA_TYPE_VALUE_AND_PERCENTAGE_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
- CategorySeriesAxisRecord - Class in loci.poi.hssf.record
-
This record refers to a category or series axis and is used to specify label/tickmark frequency.
- CategorySeriesAxisRecord() - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord
-
- CategorySeriesAxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord
-
Constructs a CategorySeriesAxis record and sets its fields appropriately.
- causalCXInfo - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Uses vertically stripe causal context formation.
- cb0x - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
The horizontal code-block partition origin
- cb0x - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The horizontal coordinate of the code-block partition origin on the
reference grid
- cb0y - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
The vertical code-block partition origin
- cb0y - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The vertical coordinate of the code-block partition on the reference
grid
- CBAR - Static variable in class ome.units.UNITS
-
- cBegin - Variable in class loci.plugins.in.ImporterOptions
-
- cbI - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Array containing info.
- cbLength - Variable in class jj2000.j2k.codestream.reader.PktInfo
-
The length of the code-block in this packet (in bytes)
- cblk - Variable in class jj2000.j2k.codestream.PrecInfo
-
Code-blocks belonging to this precinct in each subbands of the
resolution level
- CBlkCoordInfo - Class in jj2000.j2k.codestream
-
This class is used to store the coordinates of code-blocks.
- CBlkCoordInfo() - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo
-
Constructor.
- CBlkCoordInfo(int, int) - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo
-
Constructor.
- CBlkInfo - Class in jj2000.j2k.codestream.reader
-
This class contains location of code-blocks' piece of codewords
(there is one piece per layer) and some other information.
- CBlkInfo(int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.reader.CBlkInfo
-
Constructs a new instance with specified number of layers and
code-block coordinates.
- CBlkQuantDataSrcDec - Interface in jj2000.j2k.quantization.dequantizer
-
This interface defines a source of quantized wavelet coefficients and
methods to transfer them in a code-block by code-block basis, fro the
decoder side.
- CBlkQuantDataSrcEnc - Interface in jj2000.j2k.quantization.quantizer
-
This interface defines a source of quantized wavelet coefficients and
methods to transfer them in a code-block by code-block basis.
- CBlkRateDistStats - Class in jj2000.j2k.entropy.encoder
-
This class stores coded (compressed) code-blocks with their associated
rate-distortion statistics.
- CBlkRateDistStats() - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
Creates a new CBlkRateDistStats object without allocating any space for
'truncRates', 'truncSlopes', 'truncDists' and 'truncIdxs' or 'data'.
- CBlkRateDistStats(int, int, int, byte[], int[], double[], boolean[], int, boolean) - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
Creates a new CBlkRateDistStats object and initializes the valid
truncation points, their rates and their slopes, from the 'rates' and
'dist' arrays.
- cblks - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
List of code-blocks found in last read packet head (one list
per subband)
- cblks - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
Code-blocks sizes specification
- cblks - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
5D Array containing all the coded code-blocks:
1st index: tile index
2nd index: component index
3rd index: resolution level index
4th index: subband index
5th index: code-block index
- cblks - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The code-block size specifications
- cblks - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The code-block size specifications
- CBlkSizeSpec - Class in jj2000.j2k.entropy
-
This class extends ModuleSpec class for code-blocks sizes holding purposes.
- CBlkSizeSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec
-
Creates a new CBlkSizeSpec object for the specified number of tiles and
components.
- CBlkSizeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec
-
Creates a new CBlkSizeSpec object for the specified number of tiles and
components and the parameters instance.
- cblkToDecode - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
The total number of code-blocks to decode
- CBlkWTData - Class in jj2000.j2k.wavelet.analysis
-
This is a generic abstract class to store a code-block of wavelet data, be
it quantized or not.
- CBlkWTData() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTData
-
- CBlkWTDataFloat - Class in jj2000.j2k.wavelet.analysis
-
This is an implementation of the 'CBlkWTData' abstract class for 32 bit
floating point data (float).
- CBlkWTDataFloat() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
-
- CBlkWTDataInt - Class in jj2000.j2k.wavelet.analysis
-
This is an implementation of the 'CBlkWTData' abstract class for signed 32
bit integer data.
- CBlkWTDataInt() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
-
- CBlkWTDataSrc - Interface in jj2000.j2k.wavelet.analysis
-
This abstract class defines methods to transfer wavelet data in a
code-block by code-block basis.
- CBlkWTDataSrcDec - Interface in jj2000.j2k.wavelet.synthesis
-
This abstract class defines methods to transfer wavelet data in a
code-block by code-block basis, for the decoder side.
- cbOff - Variable in class jj2000.j2k.codestream.reader.PktInfo
-
The code-block offset in the codestream (for this packet)
- CBZip2InputStream - Class in loci.common
-
An input stream that decompresses from the BZip2 format (without the file
header chars) to be read as any other stream.
- CBZip2InputStream(InputStream) - Constructor for class loci.common.CBZip2InputStream
-
Constructs a new CBZip2InputStream which decompresses bytes read from
the specified stream.
- CBZip2InputStream.Data - Class in loci.common
-
- CBZip2InputStream.Data(int) - Constructor for class loci.common.CBZip2InputStream.Data
-
- ccb - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
The object where to store the compressed code-block
- CCD_SENSITIVITY - Static variable in class loci.formats.in.CellSensReader
-
- cChoice - Variable in class loci.formats.gui.DataConverter
-
- cChoice - Variable in class loci.plugins.in.SwapDialog
-
- ccoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- ccom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM
-
- cdata - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- cdata - Variable in class loci.formats.in.ZeissTIFFHandler
-
- cdstreamStart - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
- ce - Variable in class jj2000.j2k.entropy.Progression
-
Component index for the end of a progression.
- CELL_LENGTH - Static variable in class loci.formats.tiff.IFD
-
- CELL_TYPE_BLANK - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Blank Cell type (3)
- CELL_TYPE_BOOLEAN - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Boolean Cell type (4)
- CELL_TYPE_ERROR - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Error Cell type (5)
- CELL_TYPE_FORMULA - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Formula Cell type (2)
- CELL_TYPE_NUMERIC - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Numeric Cell type (0)
- CELL_TYPE_STRING - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
String Cell type (1)
- CELL_WIDTH - Static variable in class loci.formats.tiff.IFD
-
- CellH5PathsToImageData - Variable in class loci.formats.in.CellH5Reader
-
- CellH5PositionList - Variable in class loci.formats.in.CellH5Reader
-
- CellH5Reader - Class in loci.formats.in
-
Reader for CellH5 (HDF) files.
- CellH5Reader() - Constructor for class loci.formats.in.CellH5Reader
-
Constructs a new CellH5 HDF reader.
- CellH5Reader.CellH5Constants - Class in loci.formats.in
-
- CellH5Reader.CellH5Constants() - Constructor for class loci.formats.in.CellH5Reader.CellH5Constants
-
- CellH5Reader.CellH5Coordinate - Class in loci.formats.in
-
- CellH5Reader.CellH5Coordinate(String, String, String) - Constructor for class loci.formats.in.CellH5Reader.CellH5Coordinate
-
- CellH5Writer - Class in loci.formats.out
-
CellH5Writer is the file format writer for CellH5 format.
- CellH5Writer() - Constructor for class loci.formats.out.CellH5Writer
-
- CellH5Writer(String, String[]) - Constructor for class loci.formats.out.CellH5Writer
-
- cellIterator() - Method in class loci.poi.hssf.usermodel.HSSFRow
-
- cellObjectNames - Variable in class loci.formats.in.CellH5Reader
-
- cellomicsPattern - Variable in class loci.formats.in.CellomicsReader
-
- CellomicsReader - Class in loci.formats.in
-
Reader for Cellomics C01 files.
- CellomicsReader() - Constructor for class loci.formats.in.CellomicsReader
-
Constructs a new Cellomics reader.
- CellReference - Class in loci.poi.hssf.util
-
- CellReference(String) - Constructor for class loci.poi.hssf.util.CellReference
-
- CellReference(int, int) - Constructor for class loci.poi.hssf.util.CellReference
-
- CellReference(int, int, boolean, boolean) - Constructor for class loci.poi.hssf.util.CellReference
-
- cells - Variable in class loci.poi.hssf.model.Sheet
-
- cells - Variable in class loci.poi.hssf.usermodel.HSSFRow
-
- cells - Variable in class loci.poi.hssf.util.AreaReference
-
- CellSensReader - Class in loci.formats.in
-
CellSensReader is the file format reader for cellSens .vsi files.
- CellSensReader() - Constructor for class loci.formats.in.CellSensReader
-
Constructs a new cellSens reader.
- CellSensReader.Pyramid - Class in loci.formats.in
-
- CellSensReader.Pyramid() - Constructor for class loci.formats.in.CellSensReader.Pyramid
-
- CellSensReader.TileCoordinate - Class in loci.formats.in
-
- CellSensReader.TileCoordinate(int) - Constructor for class loci.formats.in.CellSensReader.TileCoordinate
-
- cellType - Variable in class loci.poi.hssf.usermodel.HSSFCell
-
- CellValueRecordInterface - Interface in loci.poi.hssf.record
-
The cell value record interface is implemented by all classes of type Record that
contain cell values.
- CellVoyagerReader - Class in loci.formats.in
-
- CellVoyagerReader() - Constructor for class loci.formats.in.CellVoyagerReader
-
- CellVoyagerReader.AreaInfo - Class in loci.formats.in
-
- CellVoyagerReader.AreaInfo() - Constructor for class loci.formats.in.CellVoyagerReader.AreaInfo
-
- CellVoyagerReader.ChannelInfo - Class in loci.formats.in
-
- CellVoyagerReader.ChannelInfo() - Constructor for class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- CellVoyagerReader.FieldInfo - Class in loci.formats.in
-
- CellVoyagerReader.FieldInfo() - Constructor for class loci.formats.in.CellVoyagerReader.FieldInfo
-
- CellVoyagerReader.WellInfo - Class in loci.formats.in
-
- CellVoyagerReader.WellInfo() - Constructor for class loci.formats.in.CellVoyagerReader.WellInfo
-
- CellWorxReader - Class in loci.formats.in
-
CellWorxReader is the file format reader for CellWorx .pnl files.
- CellWorxReader() - Constructor for class loci.formats.in.CellWorxReader
-
Constructs a new CellWorx reader.
- CELSIUS - Static variable in class ome.units.UNITS
-
- cEnd - Variable in class loci.plugins.in.ImporterOptions
-
- CENTER - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- center - Variable in class loci.poi.hssf.usermodel.HSSFFooter
-
- center - Variable in class loci.poi.hssf.usermodel.HSSFHeader
-
- CENTER_SELECTION - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- CENTERED_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
-
- centerPixelValue - Variable in class loci.formats.in.DicomReader
-
- centerX - Variable in class loci.formats.in.CellVoyagerReader.WellInfo
-
- centerY - Variable in class loci.formats.in.CellVoyagerReader.WellInfo
-
- CENTI(Unit<T>) - Static method in class ome.units.UNITS
-
- CENTIBAR - Static variable in class ome.units.UNITS
-
- CENTIHERTZ - Static variable in class ome.units.UNITS
-
- CENTIMETER - Static variable in class ome.units.UNITS
-
- CENTIMETRE - Static variable in class ome.units.UNITS
-
- CENTIPASCAL - Static variable in class ome.units.UNITS
-
- CENTISECOND - Static variable in class ome.units.UNITS
-
- CENTIVOLT - Static variable in class ome.units.UNITS
-
- CENTIWATT - Static variable in class ome.units.UNITS
-
- cepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
-
- certain - Variable in class loci.formats.AxisGuesser
-
Whether the guesser is confident that all axis types are correct.
- certain - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane
-
Certainty flag, for dealing with unspecified NumPlanes.
- certifiedText - Variable in class loci.common.xml.LSInputI
-
- cf - Variable in class org.libjpegturbo.turbojpeg.TJTransform
-
Custom filter instance
- CF_BITMAP - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format - Bitmap
- CF_DIB - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format - Device Independent Bitmap
- CF_ENHMETAFILE - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format - Enhanced Windows metafile format
- CF_METAFILEPICT - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format - Windows metafile format.
- CFA_PATTERN - Static variable in class loci.formats.tiff.IFD
-
- cfaPattern - Variable in class loci.formats.in.DNGReader
-
- cfaPattern - Variable in class loci.formats.in.NikonReader
-
- cfdHF - Variable in class loci.formats.in.SDTInfo
-
- cfdLH - Variable in class loci.formats.in.SDTInfo
-
- cfdLL - Variable in class loci.formats.in.SDTInfo
-
- cfdZC - Variable in class loci.formats.in.SDTInfo
-
- CFG_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- CFG_SUFFIX - Static variable in class loci.formats.in.PrairieReader
-
- cfgFile - Variable in class loci.formats.in.PrairieReader
-
The associated XML files.
- cftab - Variable in class loci.common.CBZip2InputStream.Data
-
- CFTAG_FMTID - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format Tag - Format ID
- CFTAG_MACINTOSH - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format Tag - Macintosh clipboard format
- CFTAG_NODATA - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format Tag - No Data
- CFTAG_WINDOWS - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format Tag - Windows clipboard format
- CHAINED_LAYERS - Static variable in class loci.formats.in.CellSensReader
-
- chan - Variable in class loci.formats.in.SDTInfo
-
Routing channel number.
- CHANDESC - Static variable in class loci.formats.in.LeicaReader
-
- changedUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets
-
- changeName(String, String) - Method in class loci.poi.poifs.filesystem.DirectoryNode
-
Change a contained Entry's name
- changeName(Property, String) - Method in class loci.poi.poifs.property.DirectoryProperty
-
Change a Property's name
- changeOutputFile(String) - Method in class loci.formats.FormatWriter
-
- changeOutputFile(String) - Method in interface loci.formats.IFormatWriter
-
Switch the output file for the current dataset.
- changeOutputFile(String) - Method in class loci.formats.ImageWriter
-
- changeOutputFile(String) - Method in class loci.formats.WriterWrapper
-
- changingElemSize - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- chanMax - Variable in class loci.formats.MinMaxCalculator
-
Max values for each channel.
- chanMin - Variable in class loci.formats.MinMaxCalculator
-
Min values for each channel.
- channel - Variable in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
The FileChannel data source.
- channel - Variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
The FileChannel data destination.
- channel - Variable in class loci.common.NIOByteBufferProvider
-
File channel to allocate or map data from.
- channel - Variable in class loci.common.NIOFileHandle
-
The file channel backed by the random access file.
- channel - Variable in class loci.common.NIOInputStream
-
The file channel backed by the random access file.
- CHANNEL - Static variable in class loci.formats.FormatTools
-
Identifies the Channel dimensional type,
representing a generic channel dimension.
- channel - Variable in class loci.formats.in.LeicaHandler.Detector
-
- channel - Variable in class loci.formats.in.LeicaHandler.MultiBand
-
- channel - Variable in class loci.formats.in.PrairieMetadata.PFile
-
channel of this <File>.
- channel - Variable in class loci.formats.in.SPCReader
-
- Channel - Class in ome.xml.model
-
- Channel() - Constructor for class ome.xml.model.Channel
-
Default constructor.
- Channel(Element, OMEModel) - Constructor for class ome.xml.model.Channel
-
Constructs Channel recursively from an XML DOM tree.
- Channel(Channel) - Constructor for class ome.xml.model.Channel
-
Copy constructor.
- CHANNEL_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_AMPLIFIER_GAIN - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_CONTRAST_BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_COUNT - Static variable in class loci.tests.testng.Configuration
-
- CHANNEL_COUNT_TAG - Static variable in class loci.formats.in.FlowSightReader
-
- CHANNEL_DEFINITION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CHANNEL_DESCS_TAG - Static variable in class loci.formats.in.FlowSightReader
-
- CHANNEL_DETECTOR_GAIN - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_DIM - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_FILTER - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_FILTER_SET - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_GAMMA_CORRECTION - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_INFO_PROPERTIES - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_NAME - Static variable in class loci.formats.FormatTools
-
- CHANNEL_NAME - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_NAME - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_NAME - Static variable in class loci.tests.testng.Configuration
-
- CHANNEL_NAMES_TAG - Static variable in class loci.formats.in.FlowSightReader
-
- CHANNEL_NUM - Static variable in class loci.formats.FormatTools
-
- CHANNEL_OVERFLOW - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_PINHOLE_DIAMETER - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_PRIORITIES - Static variable in class loci.formats.in.LIFReader
-
- CHANNEL_PROPERTIES - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_TAG - Static variable in class loci.formats.in.SlidebookTiffReader
-
- CHANNEL_TRANSPARENCY_VALUE - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_VISIBLE - Static variable in class loci.formats.in.CellSensReader
-
- channelColor - Variable in class loci.formats.in.LeicaReader
-
- channelColor - Variable in class loci.formats.in.ZeissLSMReader
-
- channelColors - Variable in class loci.formats.in.BaseZeissReader
-
- channelColors - Variable in class loci.formats.in.NativeND2Reader
-
- ChannelDefinitionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is designed to represent a Channel Definition Box of
JPEG JP2 file format.
- ChannelDefinitionBox(ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox based on the provided
ColorModel.
- ChannelDefinitionBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox based on the provided
content in byte array.
- ChannelDefinitionBox(short[], short[], short[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox based on the provided
channel definitions.
- ChannelDefinitionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox based on the provided
org.w3c.dom.Node.
- channelDescs - Variable in class loci.formats.in.FlowSightReader
-
- ChannelFiller - Class in loci.formats
-
For indexed color data representing true color, factors out
the indices, replacing them with the color table values directly.
- ChannelFiller() - Constructor for class loci.formats.ChannelFiller
-
Constructs a ChannelFiller around a new image reader.
- ChannelFiller(IFormatReader) - Constructor for class loci.formats.ChannelFiller
-
Constructs a ChannelFiller with a given reader.
- channelFiller - Variable in class loci.plugins.in.ImportProcess
-
- ChannelImageInputStreamSpi - Class in com.sun.media.imageioimpl.stream
-
- ChannelImageInputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
-
- ChannelImageOutputStreamSpi - Class in com.sun.media.imageioimpl.stream
-
- ChannelImageOutputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
-
- channelIndices - Variable in class loci.formats.in.BaseZeissReader
-
- channelInfos - Variable in class loci.formats.in.CellVoyagerReader
-
- channelLengths - Variable in class loci.formats.in.ICSReader
-
The length of each channel axis.
- channelLinks - Variable in class ome.xml.model.Annotation
-
- channelMap - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- channelMax - Variable in class loci.formats.in.ImarisHDFReader
-
- ChannelMerger - Class in loci.formats
-
Logic to automatically merge channels in a file.
- ChannelMerger() - Constructor for class loci.formats.ChannelMerger
-
Constructs a ChannelMerger around a new image reader.
- ChannelMerger(IFormatReader) - Constructor for class loci.formats.ChannelMerger
-
Constructs a ChannelMerger with the given reader.
- channelMin - Variable in class loci.formats.in.ImarisHDFReader
-
- channelName - Variable in class loci.formats.in.BaseZeissReader
-
- channelName - Variable in class loci.formats.in.ImarisHDFReader
-
- channelName - Variable in class loci.formats.in.MetamorphHandler
-
- channelName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- channelName - Variable in class loci.formats.in.OperettaReader.Plane
-
- channelName - Variable in class loci.formats.in.PrairieMetadata.PFile
-
channelName attribute of this <File>.
- channelName - Variable in class loci.formats.in.SISReader
-
- channelName - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel
-
- channelNames - Variable in class loci.formats.in.BDReader
-
- channelNames - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- channelNames - Variable in class loci.formats.in.FlexReader
-
- channelNames - Variable in class loci.formats.in.FlowSightReader
-
- channelNames - Variable in class loci.formats.in.FluoviewReader
-
- channelNames - Variable in class loci.formats.in.InCellReader
-
- channelNames - Variable in class loci.formats.in.LeicaReader
-
- channelNames - Variable in class loci.formats.in.LIFReader
-
- channelNames - Variable in class loci.formats.in.ND2Handler
-
- channelNames - Variable in class loci.formats.in.ScanrReader
-
- channelNames - Variable in class loci.formats.in.SlidebookTiffReader
-
- channelNames - Variable in class loci.formats.in.VolocityReader.Stack
-
- channelNames - Variable in class loci.formats.in.ZeissLSMReader
-
- channelNumber - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- channelNumber - Variable in class loci.plugins.util.RecordedImageProcessor
-
- channelOrder - Variable in class loci.formats.in.PhotoshopTiffReader
-
- ChannelRef - Class in ome.xml.model
-
- ChannelRef() - Constructor for class ome.xml.model.ChannelRef
-
Default constructor.
- ChannelRef(Element, OMEModel) - Constructor for class ome.xml.model.ChannelRef
-
Constructs ChannelRef recursively from an XML DOM tree.
- ChannelRef(ChannelRef) - Constructor for class ome.xml.model.ChannelRef
-
Copy constructor.
- channels - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
- channels - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Channel definitions
- channels - Variable in class loci.formats.codec.CodecOptions
-
Number of channels.
- channels - Variable in class loci.formats.in.FV1000Reader
-
- channels - Variable in class loci.formats.in.LeicaHandler
-
- channels - Variable in class loci.formats.in.LiFlimReader
-
- channels - Variable in class loci.formats.in.MicromanagerReader.Position
-
- channels - Variable in class loci.formats.in.PrairieReader
-
List of active channels.
- channels - Variable in class loci.formats.in.SDTInfo
-
- channels - Variable in class loci.formats.in.SDTReader
-
Number of spectral channels.
- channels - Variable in class loci.formats.in.TextReader
-
List of channel labels.
- channels - Variable in class loci.formats.in.ZeissCZIReader
-
- channels - Variable in class loci.formats.in.ZeissTIFFReader
-
- channels - Variable in class ome.xml.model.FilterSet
-
- channels - Variable in class ome.xml.model.Pixels
-
- ChannelSeparator - Class in loci.formats
-
Logic to automatically separate the channels in a file.
- ChannelSeparator() - Constructor for class loci.formats.ChannelSeparator
-
Constructs a ChannelSeparator around a new image reader.
- ChannelSeparator(IFormatReader) - Constructor for class loci.formats.ChannelSeparator
-
Constructs a ChannelSeparator with the given reader.
- channelSeparator - Variable in class loci.plugins.in.ImportProcess
-
- channelsPerTimepoint - Variable in class loci.formats.in.InCellReader
-
- channelTypes - Variable in class loci.formats.in.ICSReader
-
The type of each channel axis.
- channelWavelengths - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- CHAR - Static variable in class loci.formats.in.CellSensReader
-
- CHAR - Static variable in class loci.formats.in.GatanReader
-
- character - Variable in class loci.poi.hssf.record.UnicodeString.FormatRun
-
- characterCellHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- characterCellWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- characters(char[], int, int) - Method in class loci.common.xml.MetadataHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.AFIReader.AFIHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.BioRadSCNReader.SCNHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.FEITiffReader.FEIHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.FlexReader.FlexHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.ImaconReader.ImaconHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.InCellReader.InCellHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.IvisionReader.IvisionHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.ScanrReader.ScanrHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.ZeissTIFFHandler
-
- characters(char[], int, int) - Method in class loci.formats.out.OMEXMLWriter.OMEHandler
-
- characterStream - Variable in class loci.common.xml.LSInputI
-
- charData - Variable in class loci.formats.in.FlexReader.FlexHandler
-
- CHARS - Static variable in class loci.formats.tools.AsciiImage
-
- charset - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- ChartFormatRecord - Class in loci.poi.hssf.record
-
Class ChartFormatRecord
- ChartFormatRecord() - Constructor for class loci.poi.hssf.record.ChartFormatRecord
-
- ChartFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartFormatRecord
-
Constructs a ChartFormatRecord record and sets its fields appropriately.
- ChartRecord - Class in loci.poi.hssf.record
-
The chart record is used to define the location and size of a chart.
- ChartRecord() - Constructor for class loci.poi.hssf.record.ChartRecord
-
- ChartRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartRecord
-
Constructs a Chart record and sets its fields appropriately.
- chartTypeManuallyFormatted - Variable in class loci.poi.hssf.record.SheetPropertiesRecord
-
- charWidths - Variable in class loci.poi.hssf.usermodel.FontDetails
-
- CHECK - Static variable in class loci.formats.in.ZeissLMSReader
-
- check(int) - Method in class loci.poi.util.CommonsLogger
-
Check if a logger is enabled to log at the specified level
- check(int) - Method in class loci.poi.util.NullLogger
-
Check if a logger is enabled to log at the specified level
- check(int) - Method in class loci.poi.util.POILogger
-
Check if a logger is enabled to log at the specified level
- check(int) - Method in class loci.poi.util.SystemOutLogger
-
Check if a logger is enabled to log at the specified level
- checkBounds(int) - Method in class loci.poi.hssf.usermodel.HSSFCell
-
- checkBufferSize(IFormatReader, int) - Static method in class loci.formats.FormatTools
-
- checkBufferSize(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools
-
Checks that the given buffer size is large enough to hold a w * h
image as returned by the given reader.
- checkBytePadding() - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput
-
Checks for past errors in the decoding process by verifying the byte
padding with an alternating sequence of 0's and 1's.
- checkCells() - Method in class loci.poi.hssf.model.Sheet
-
- checkClass(String) - Static method in class loci.plugins.util.LibraryChecker
-
Checks whether the given class is available.
- checkClassDependency(Class<? extends Object>) - Method in class loci.common.services.AbstractService
-
Checks a given class dependency at runtime to ensure that a given class
will be available.
- checkClassDependency(Class<? extends Object>) - Method in class loci.formats.services.WlzServiceImpl
-
- checkCommentImageJ(String) - Method in class loci.formats.in.TiffReader
-
- checkCommentMetamorph(String) - Method in class loci.formats.in.TiffReader
-
- checkComplexData(byte[]) - Static method in class loci.poi.ddf.EscherArrayProperty
-
- checkDefaultBackgroundFills() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Checks if the background and foreground fills are set correctly when one
or the other is set to the default color.
- checkDimsLoc(Record, int) - Method in class loci.poi.hssf.model.Sheet
-
in the event the record is a dimensions record, resets both the loc index and dimsloc index
- checkElement(Element, String) - Method in class loci.formats.in.PrairieMetadata
-
Checks that the given element has the specified name.
- checkEndOfPassFF(byte[], int[], boolean[], int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Ensures that at the end of a non-terminated coding pass there is not a
0xFF byte, modifying the stored rates if necessary.
- checkExternSheet(int) - Method in class loci.poi.hssf.model.Workbook
-
returns the extern sheet number for specific sheet number ,
if this sheet doesn't exist in extern sheet , add it
- checkFileSize() - Method in class ome.jxr.parser.FileParser
-
Deprecated.
- checkFileStructureVersion() - Method in class ome.jxr.parser.FileParser
-
Deprecated.
- checkGDISignaturePresence() - Method in class ome.jxr.parser.DatastreamParser
-
Deprecated.
- checkHeader() - Method in class loci.formats.tiff.TiffParser
-
Checks the TIFF header.
- checkHeaderBOM() - Method in class ome.jxr.parser.FileParser
-
Deprecated.
- checkHeaderLength() - Method in class ome.jxr.parser.FileParser
-
Deprecated.
- checkIfValidJpegXr() - Method in class ome.jxr.parser.FileParser
-
Deprecated.
- checkImageJ() - Static method in class loci.plugins.util.LibraryChecker
-
Checks whether ImageJ is new enough for the Bio-Formats plugins.
- checkImageJ(String, String) - Static method in class loci.plugins.util.LibraryChecker
-
Returns true the current ImageJ version is greater than or equal to the
specified version.
- checkImageJ(String, String, String) - Static method in class loci.plugins.util.LibraryChecker
-
Returns true the current ImageJ version is greater than or equal to the
specified version.
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- checkJava() - Static method in class loci.plugins.util.LibraryChecker
-
Checks for a new enough version of the Java Runtime Environment.
- checkKey(String, String) - Method in class loci.formats.in.MetamorphHandler
-
Check if the value needs to be saved.
- checkKey(String, String) - Method in class loci.plugins.in.ImporterOptions
-
Tests whether the given boolean key is set in the specified options.
- checkKey(Object) - Static method in class loci.poi.util.BinaryTree
-
check a key for validity (non-null and implements Comparable)
- checkKeyAndValue(Object, Object) - Static method in class loci.poi.util.BinaryTree
-
check a key and a value for validity (non-null and implements
Comparable)
- checkLatest(String, String) - Static method in class loci.plugins.config.InstallWizard
-
- checkLibrary() - Static method in class jj2000.j2k.util.NativeServices
-
Checks if the library SHLIB_NAME is already loaded and attempts to load
if not yet loaded.
- checkLibrary(LibraryChecker.Library, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
-
Checks for a required library.
- checkLibrary(String, String, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
-
Checks whether the given class is available; if not,
adds the specified JAR file name to the hash set
(presumably to report it missing to the user).
- checkMarkerLength(DataInputStream, String) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Checks that the marker segment length is correct.
- checkMismatch(boolean, boolean, int, String) - Static method in class loci.tests.testng.FormatWriterTest
-
- checkMismatch(int, int, int, String) - Static method in class loci.tests.testng.FormatWriterTest
-
- checkMismatch(String, String, int, String) - Static method in class loci.tests.testng.FormatWriterTest
-
- checkMissing(HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
-
Reports missing libraries in the given hash set to the user.
- checkNonNullComparable(Object, int) - Static method in class loci.poi.util.BinaryTree
-
check if an object is fit to be proper input ...
- checkObsoleteOptions() - Method in class loci.plugins.in.ImporterOptions
-
Handles obsolete macro keys, for backward compatibility.
- checkParams(int, byte[], int, int, int, int) - Method in class loci.formats.FormatWriter
-
Ensure that the arguments that are being passed to saveBytes(...) are
valid.
- checkParams - Variable in class loci.formats.out.TiffWriter
-
Whether or not to check the parameters passed to saveBytes.
- checkParamsEmpty(ImageTypeSpecifier, int, int, List) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- checkPerformed - Static variable in class loci.plugins.in.UpgradeDialog
-
Whether an upgrade check has already been performed this session.
- checkPlaneNumber(IFormatReader, int) - Static method in class loci.formats.FormatTools
-
Checks that the given plane number is valid for the given reader.
- checkPlaneParameters(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Convenience method for checking that the plane number, tile size and
buffer sizes are all valid for the given reader.
- checkPoints(int) - Method in enum loci.formats.in.BaseZeissReader.FeatureType
-
- checkPredTerm() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
Checks for past errors in the decoding process using the predictable
error resilient termination.
- checkProgMode(String) - Method in class jj2000.j2k.entropy.ProgressionSpec
-
Check if the progression mode exists and if so, return its integer
value.
- checkQTLibrary() - Method in class loci.formats.gui.LegacyQTTools
-
Checks whether QTJava is available, throwing an exception if not.
- checkRange(int, int, int, String) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
-
- checkReadParamBandSettingsWrapper(ImageReadParam, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Wrapper for the protected method checkReadParamBandSettings.
- checkRecordPosition() - Method in class loci.poi.hssf.record.RecordInputStream
-
- checkRows() - Method in class loci.poi.hssf.model.Sheet
-
- checkSampleModel(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- checkSampleModel(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- checkSheets(int) - Method in class loci.poi.hssf.model.Workbook
-
if we're trying to address one more sheet than we have, go ahead and add it! if we're
trying to address >1 more than we have throw an exception!
- checkSuffix(String, String) - Static method in class loci.formats.FormatHandler
-
Performs suffix matching for the given filename.
- checkSuffix(String, String[]) - Static method in class loci.formats.FormatHandler
-
Performs suffix matching for the given filename.
- checkTargetErrors() - Method in class jj2000.j2k.util.ThreadPool
-
Checks that no error or runtime exception in any target have occurred
so far.
- checkTileSize(IFormatReader, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Checks that the given tile size is valid for the given reader.
- checkTime(long, int, long, long) - Method in class loci.formats.in.TextReader
-
- checkUnit(String, String...) - Method in class loci.formats.in.ICSReader
-
Verifies that a unit matches the expected value.
- checkUTF8(InputStream) - Static method in class loci.common.xml.XMLTools
-
Checks the given stream for a UTF-8 BOM header, skipping it if present.
- checkUUIDInfoBox(Node, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
Check whether the child with a name childName exists.
- checkValidId(String) - Static method in class loci.common.Location
-
Checks that the given id points at a valid data stream.
- checkValue(Object) - Static method in class loci.poi.util.BinaryTree
-
check a value for validity (non-null and implements Comparable)
- Child - Interface in loci.poi.poifs.property
-
This interface defines methods for finding and setting sibling
Property instances
- childCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- childNames - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo
-
- childPolicy - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo
-
- childRecords - Variable in class loci.poi.ddf.EscherContainerRecord
-
- childRecords - Variable in class loci.poi.ddf.UnknownEscherRecord
-
- children - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- children - Variable in class loci.poi.hssf.model.Node
-
- CHIP_SIZE_X - Static variable in class loci.formats.in.FluoviewReader
-
- CHIP_SIZE_Y - Static variable in class loci.formats.in.FluoviewReader
-
- chksum - Variable in class loci.formats.in.SDTInfo
-
- chosenDocumentDescriptors - Variable in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry
-
- CHROMA_SUBSAMPLING - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor
-
- chromaCenteringX - Variable in class ome.jxr.parser.DatastreamParser
-
Deprecated.
- chromaCenteringY - Variable in class ome.jxr.parser.DatastreamParser
-
Deprecated.
- chromaSubsampleH - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- chromaSubsampleV - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- CHUNK_SIZE - Static variable in class loci.formats.UpgradeChecker
-
Number of bytes to read from the CI server at a time.
- chunkSizes - Variable in class loci.formats.in.NativeQTReader
-
Number of bytes in each plane.
- CHZ - Static variable in class ome.units.UNITS
-
- CI_SERVER - Static variable in class loci.formats.UpgradeChecker
-
Location of the OME continuous integration server.
- cIndex - Variable in class loci.formats.in.BaseZeissReader
-
- cIndex - Variable in class loci.plugins.util.DataBrowser
-
- CIRCLE - Static variable in class loci.formats.in.FV1000Reader
-
- CIRCLE - Static variable in class loci.formats.in.ZeissLSMReader
-
- CIRCLE_3POINT - Static variable in class loci.formats.in.ZeissLSMReader
-
- cLabel - Variable in class loci.formats.gui.DataConverter
-
- clamp(float) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- clamp(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- clamp2(float) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- CLASS_ARRAY - Static variable in class loci.poi.hssf.record.formula.Ptg
-
- CLASS_IMAGE_5D - Static variable in class loci.plugins.in.ImporterOptions
-
- CLASS_LABELS - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- CLASS_REF - Static variable in class loci.poi.hssf.record.formula.Ptg
-
- CLASS_VALUE - Static variable in class loci.poi.hssf.record.formula.Ptg
-
- CLASS_VIEW_5D - Static variable in class loci.plugins.in.ImporterOptions
-
- classes - Variable in class loci.formats.ClassList
-
List of classes.
- classes - Variable in class loci.formats.in.CellH5Reader
-
- ClassID - Class in loci.poi.hpsf
-
Represents a class ID (16 bytes).
- ClassID(byte[], int) - Constructor for class loci.poi.hpsf.ClassID
-
Creates a
ClassID and reads its value from a byte
array.
- ClassID() - Constructor for class loci.poi.hpsf.ClassID
-
Creates a
ClassID and initializes its value with
0x00 bytes.
- classID - Variable in class loci.poi.hpsf.PropertySet
-
- ClassList<T> - Class in loci.formats
-
ClassList is a list of classes for use with
ImageReader or
ImageWriter, parsed from a configuration file such as readers.txt
or writers.txt.
- ClassList(Class<T>) - Constructor for class loci.formats.ClassList
-
Constructs a list of classes, initially empty.
- ClassList(String, Class<T>) - Constructor for class loci.formats.ClassList
-
Constructs a list of classes from the given configuration file.
- ClassList(String, Class<T>, Class<?>) - Constructor for class loci.formats.ClassList
-
Constructs a list of classes from the given configuration file.
- classList - Variable in class loci.formats.FileStitcher
-
- CLEAN_FAX_DATA_ERRORS_CORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
A value to be used with the "CleanFaxData" tag.
- CLEAN_FAX_DATA_ERRORS_UNCORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
A value to be used with the "CleanFaxData" tag.
- CLEAN_FAX_DATA_NO_ERRORS - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
A value to be used with the "CleanFaxData" tag.
- cleanStaleCacheEntries() - Static method in class loci.common.Location
-
Remove any cached directory listings that have expired.
- cleanup() - Method in class loci.formats.Memoizer
-
- cleanup() - Method in class loci.tests.testng.SubResolutionTest
-
- cleanuppass(DataBlk, MQDecoder, int, int[], int[], boolean) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Performs the cleanup pass on the specified data and bit-plane.
- cleanuppass(CBlkWTData, MQCoder, boolean, int, int[], int[], int[], int[], int[], int[], int, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Performs the cleanup pass on the specified data and bit-plane.
- clear() - Method in class loci.formats.codec.ByteVector
-
- clear() - Method in class loci.poi.hpsf.MutableSection
-
Removes all properties from the section including 0 (dictionary) and
1 (codepage).
- clear() - Method in class loci.poi.hssf.record.EscherAggregate
-
- clear() - Method in class loci.poi.util.BinaryTree
-
Removes all mappings from this map
- clear(int) - Method in class loci.poi.util.BitField
-
Clear the bits.
- clear() - Method in class loci.poi.util.DoubleList
-
Removes all of the elements from this list.
- clear() - Method in class loci.poi.util.IntList
-
Removes all of the elements from this list.
- clear() - Method in class loci.poi.util.ShortList
-
Removes all of the elements from this list.
- clear() - Method in class ome.xml.model.ReferenceList
-
- CLEAR_CODE - Static variable in class loci.formats.codec.LZWCodec
-
- clearByte(byte) - Method in class loci.poi.util.BitField
-
Clear the bits.
- clearCode_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor
-
reserved clear code based on code size
- clearDestImage() - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- clearDirectoryListingsCache() - Static method in class loci.common.Location
-
Clear the directory listings cache.
- clearEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- clearFormatting() - Method in class loci.poi.hssf.record.UnicodeString
-
- clearFormatting() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Removes any formatting that may have been applied to the string.
- clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
-
- clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- clearSections() - Method in class loci.poi.hpsf.MutablePropertySet
-
Removes all sections from this property set.
- clearSections() - Method in class loci.poi.hpsf.SpecialPropertySet
-
- clearSeries() - Method in class loci.plugins.in.ImporterOptions
-
- clearShort(short) - Method in class loci.poi.util.BitField
-
Clear the bits.
- clearSubRecords() - Method in class loci.poi.hssf.record.ObjRecord
-
- ClearTable(int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
-
- clearTargetErrors() - Method in class jj2000.j2k.util.ThreadPool
-
Clears the current target error conditions, if any.
- clearXML() - Method in class loci.formats.in.ZeissCZIReader.Metadata
-
- clength - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
Length of codestream
- cLengths - Variable in class loci.plugins.util.DataBrowser
-
- clip(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- clip(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- clip(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- clip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- clipDestination(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- CLIPPING - Static variable in class loci.formats.in.CellSensReader
-
- CLIPPING_MAGIC_STRING - Static variable in class loci.formats.in.VolocityClippingReader
-
- CLIPPING_STATE - Static variable in class loci.formats.in.CellSensReader
-
- clippingData - Variable in class loci.formats.in.VolocityReader.Stack
-
- clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
-
- clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- CLOCKWISE - Static variable in class loci.formats.in.FluoviewReader
-
- clone() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Clones the directory and all the fields contained therein.
- clone() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- clone() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- clone() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- clone() - Method in class jj2000.j2k.ModuleSpec
-
- clone() - Method in class loci.formats.CoreMetadata
-
- clone(IFormatReader, int) - Method in class loci.formats.CoreMetadata
-
- clone() - Method in class loci.formats.SwappableMetadata
-
- clone(IFormatReader, int) - Method in class loci.formats.SwappableMetadata
-
- clone() - Method in class loci.poi.ddf.EscherRecord
-
Escher records may need to be clonable in the future.
- clone() - Method in class loci.poi.ddf.EscherTextboxRecord
-
- clone() - Method in class loci.poi.ddf.UnknownEscherRecord
-
- clone() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- clone() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
-
Performs a deep clone of the record
- clone() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
-
- clone() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
-
Performs a deep clone of the record
- clone() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
-
Performs a deep clone of the record
- clone() - Method in class loci.poi.hssf.record.AreaFormatRecord
-
- clone() - Method in class loci.poi.hssf.record.AreaRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisLineFormatRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisOptionsRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisParentRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisUsedRecord
-
- clone() - Method in class loci.poi.hssf.record.BarRecord
-
- clone() - Method in class loci.poi.hssf.record.BlankRecord
-
- clone() - Method in class loci.poi.hssf.record.BOFRecord
-
- clone() - Method in class loci.poi.hssf.record.BoolErrRecord
-
- clone() - Method in class loci.poi.hssf.record.BottomMarginRecord
-
- clone() - Method in class loci.poi.hssf.record.CalcCountRecord
-
- clone() - Method in class loci.poi.hssf.record.CalcModeRecord
-
- clone() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
-
- clone() - Method in interface loci.poi.hssf.record.CellValueRecordInterface
-
- clone() - Method in class loci.poi.hssf.record.ChartRecord
-
- clone() - Method in class loci.poi.hssf.record.ColumnInfoRecord
-
- clone() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
-
- clone() - Method in class loci.poi.hssf.record.ContinueRecord
-
Clone this record.
- clone() - Method in class loci.poi.hssf.record.DataFormatRecord
-
- clone() - Method in class loci.poi.hssf.record.DatRecord
-
- clone() - Method in class loci.poi.hssf.record.DefaultColWidthRecord
-
- clone() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
- clone() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
-
- clone() - Method in class loci.poi.hssf.record.DeltaRecord
-
- clone() - Method in class loci.poi.hssf.record.DimensionsRecord
-
- clone() - Method in class loci.poi.hssf.record.EndSubRecord
-
- clone() - Method in class loci.poi.hssf.record.EOFRecord
-
- clone() - Method in class loci.poi.hssf.record.FilePassRecord
-
- clone() - Method in class loci.poi.hssf.record.FileSharingRecord
-
Clone this record.
- clone() - Method in class loci.poi.hssf.record.FontBasisRecord
-
- clone() - Method in class loci.poi.hssf.record.FontIndexRecord
-
- clone() - Method in class loci.poi.hssf.record.FooterRecord
-
- clone() - Method in class loci.poi.hssf.record.formula.AddPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.Area3DPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaAPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaErrPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaNAPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaNPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaNVPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaVPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ArrayPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgA
-
- clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgV
-
- clone() - Method in class loci.poi.hssf.record.formula.AttrPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.BoolPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ConcatPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.DividePtg
-
- clone() - Method in class loci.poi.hssf.record.formula.EqualPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ErrPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ExpPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.FuncPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.FuncVarPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg
-
Implementation of clone method from Object
- clone() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.IntPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.LessThanPtg
-
Implementation of clone method from Object
- clone() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.MemErrPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.MissingArgPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.NamePtg
-
- clone() - Method in class loci.poi.hssf.record.formula.NameXPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.NumberPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.PercentPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.PowerPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.Ptg
-
- clone() - Method in class loci.poi.hssf.record.formula.RangePtg
-
- clone() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefAPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ReferencePtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefNAPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefNPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefNVPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefVPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.StringPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.SubtractPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.UnionPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.UnknownPtg
-
- clone() - Method in class loci.poi.hssf.record.FormulaRecord
-
- clone() - Method in class loci.poi.hssf.record.FrameRecord
-
- clone() - Method in class loci.poi.hssf.record.GridsetRecord
-
- clone() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord
-
- clone() - Method in class loci.poi.hssf.record.GutsRecord
-
- clone() - Method in class loci.poi.hssf.record.HCenterRecord
-
- clone() - Method in class loci.poi.hssf.record.HeaderRecord
-
- clone() - Method in class loci.poi.hssf.record.IndexRecord
-
- clone() - Method in class loci.poi.hssf.record.IterationRecord
-
- clone() - Method in class loci.poi.hssf.record.LabelRecord
-
- clone() - Method in class loci.poi.hssf.record.LabelSSTRecord
-
- clone() - Method in class loci.poi.hssf.record.LeftMarginRecord
-
- clone() - Method in class loci.poi.hssf.record.LegendRecord
-
- clone() - Method in class loci.poi.hssf.record.LineFormatRecord
-
- clone() - Method in class loci.poi.hssf.record.LinkedDataFormulaField
-
- clone() - Method in class loci.poi.hssf.record.LinkedDataRecord
-
- clone() - Method in class loci.poi.hssf.record.MergeCellsRecord
-
- clone() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
-
- clone() - Method in class loci.poi.hssf.record.NumberRecord
-
- clone() - Method in class loci.poi.hssf.record.ObjectLinkRecord
-
- clone() - Method in class loci.poi.hssf.record.ObjectProtectRecord
-
- clone() - Method in class loci.poi.hssf.record.ObjRecord
-
- clone() - Method in class loci.poi.hssf.record.PageBreakRecord
-
- clone() - Method in class loci.poi.hssf.record.PaneRecord
-
- clone() - Method in class loci.poi.hssf.record.PasswordRecord
-
Clone this record.
- clone() - Method in class loci.poi.hssf.record.PlotAreaRecord
-
- clone() - Method in class loci.poi.hssf.record.PlotGrowthRecord
-
- clone() - Method in class loci.poi.hssf.record.PrintGridlinesRecord
-
- clone() - Method in class loci.poi.hssf.record.PrintHeadersRecord
-
- clone() - Method in class loci.poi.hssf.record.PrintSetupRecord
-
- clone() - Method in class loci.poi.hssf.record.ProtectRecord
-
- clone() - Method in class loci.poi.hssf.record.Record
-
- clone() - Method in class loci.poi.hssf.record.RefModeRecord
-
- clone() - Method in class loci.poi.hssf.record.RightMarginRecord
-
- clone() - Method in class loci.poi.hssf.record.RKRecord
-
- clone() - Method in class loci.poi.hssf.record.RowRecord
-
- clone() - Method in class loci.poi.hssf.record.SaveRecalcRecord
-
- clone() - Method in class loci.poi.hssf.record.ScenarioProtectRecord
-
- clone() - Method in class loci.poi.hssf.record.SCLRecord
-
- clone() - Method in class loci.poi.hssf.record.SelectionRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesIndexRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesListRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesTextRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
-
- clone() - Method in class loci.poi.hssf.record.SharedFormulaRecord
-
- clone() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
-
- clone() - Method in class loci.poi.hssf.record.StringRecord
-
- clone() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
-
- clone() - Method in class loci.poi.hssf.record.TextRecord
-
- clone() - Method in class loci.poi.hssf.record.TickRecord
-
- clone() - Method in class loci.poi.hssf.record.TopMarginRecord
-
- clone() - Method in class loci.poi.hssf.record.UnicodeString
-
- clone() - Method in class loci.poi.hssf.record.UnitsRecord
-
- clone() - Method in class loci.poi.hssf.record.UnknownRecord
-
Unlike the other Record.clone methods this is a shallow clone
- clone() - Method in class loci.poi.hssf.record.ValueRangeRecord
-
- clone() - Method in class loci.poi.hssf.record.VCenterRecord
-
- clone() - Method in class loci.poi.hssf.record.WindowTwoRecord
-
- clone() - Method in class loci.poi.hssf.record.WSBoolRecord
-
- clone() - Method in class mdbtools.libmdb.MdbColumn
-
- clone() - Method in class mdbtools.libmdb.MdbSarg
-
- cloneArray(int[]) - Method in class loci.poi.hssf.usermodel.HSSFPolygon
-
- cloneImageReadParam(ImageReadParam, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
Creates a copy of param.
- cloneNode(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- cloneSheet() - Method in class loci.poi.hssf.model.Sheet
-
Clones the low level records of this sheet and returns the new sheet instance.
- cloneSheet(HSSFWorkbook) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
- cloneSheet(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
create an HSSFSheet from an existing sheet in the HSSFWorkbook.
- cloneStringIfRequired() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Called whenever the unicode string is modified.
- close() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
Invokes the superclass method and sets the internal reference
to the source FileChannel to null.
- close() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
Invokes the superclass method, writes any unwritten data, and
sets the internal reference to the source FileChannel
to null.
- close() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- close() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
-
- close() - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter
-
- close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
- close() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Closes the underlying resource (file, stream, network connection,
etc.).
- close() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Writes the EOC marker and closes the underlying stream.
- close() - Method in class jj2000.j2k.image.input.ImgReader
-
Closes the underlying file or network connection from where the
image data is being read.
- close() - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Closes the underlying RandomAccessFile from where the image data is
being read.
- close() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Closes the buffered random access file
- close() - Method in interface jj2000.j2k.io.RandomAccessIO
-
Closes the I/O stream.
- close() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Closes this object for reading as well as the wrapped InputStream, if
not already closed.
- close() - Method in class loci.common.ByteArrayHandle
-
- close() - Method in class loci.common.CBZip2InputStream
-
- close() - Method in class loci.common.FileHandle
-
- close() - Method in interface loci.common.IRandomAccess
-
Closes this random access stream and releases
any system resources associated with the stream.
- close() - Method in class loci.common.NIOFileHandle
-
- close() - Method in class loci.common.NIOInputStream
-
Closes the streams.
- close() - Method in class loci.common.RandomAccessInputStream
-
Closes the streams.
- close() - Method in class loci.common.RandomAccessOutputStream
-
- close() - Method in class loci.common.StreamHandle
-
- close() - Method in class loci.common.ZipHandle
-
- close(boolean) - Method in class loci.formats.ChannelSeparator
-
- close() - Method in class loci.formats.codec.JPEGTileDecoder
-
- close(boolean) - Method in class loci.formats.DelegateReader
-
- close() - Method in class loci.formats.FileStitcher
-
- close(boolean) - Method in class loci.formats.FileStitcher
-
- close(boolean) - Method in class loci.formats.FormatReader
-
- close() - Method in class loci.formats.FormatReader
-
- close() - Method in class loci.formats.FormatWriter
-
- close() - Method in class loci.formats.gui.PreviewPane
-
Closes the underlying image reader.
- close(boolean) - Method in interface loci.formats.IFormatReader
-
Closes the currently open file.
- close(boolean) - Method in class loci.formats.ImageReader
-
- close() - Method in class loci.formats.ImageReader
-
- close() - Method in class loci.formats.ImageWriter
-
- close(boolean) - Method in class loci.formats.in.AFIReader
-
- close(boolean) - Method in class loci.formats.in.AIMReader
-
- close(boolean) - Method in class loci.formats.in.AliconaReader
-
- close(boolean) - Method in class loci.formats.in.AmiraReader
-
- close(boolean) - Method in class loci.formats.in.AnalyzeReader
-
- close(boolean) - Method in class loci.formats.in.APLReader
-
- close(boolean) - Method in class loci.formats.in.APNGReader
-
- close(boolean) - Method in class loci.formats.in.AVIReader
-
- close(boolean) - Method in class loci.formats.in.BaseZeissReader
-
- close(boolean) - Method in class loci.formats.in.BDReader
-
- close(boolean) - Method in class loci.formats.in.BioRadReader
-
- close(boolean) - Method in class loci.formats.in.BioRadSCNReader
-
- close(boolean) - Method in class loci.formats.in.BMPReader
-
- close(boolean) - Method in class loci.formats.in.BrukerReader
-
- close(boolean) - Method in class loci.formats.in.BurleighReader
-
- close(boolean) - Method in class loci.formats.in.CanonRawReader
-
- close(boolean) - Method in class loci.formats.in.CellH5Reader
-
- close(boolean) - Method in class loci.formats.in.CellomicsReader
-
- close(boolean) - Method in class loci.formats.in.CellSensReader
-
- close(boolean) - Method in class loci.formats.in.CellWorxReader
-
- close(boolean) - Method in class loci.formats.in.DeltavisionReader
-
- close(boolean) - Method in class loci.formats.in.DicomReader
-
- close(boolean) - Method in class loci.formats.in.DNGReader
-
- close(boolean) - Method in class loci.formats.in.EPSReader
-
- close(boolean) - Method in class loci.formats.in.FakeReader
-
- close(boolean) - Method in class loci.formats.in.FEIReader
-
- close(boolean) - Method in class loci.formats.in.FEITiffReader
-
- close(boolean) - Method in class loci.formats.in.FilePatternReader
-
- close() - Method in class loci.formats.in.FilePatternReader
-
- close(boolean) - Method in class loci.formats.in.FitsReader
-
- close(boolean) - Method in class loci.formats.in.FlexReader
-
- close(boolean) - Method in class loci.formats.in.FlowSightReader
-
- close(boolean) - Method in class loci.formats.in.FluoviewReader
-
- close(boolean) - Method in class loci.formats.in.FujiReader
-
- close(boolean) - Method in class loci.formats.in.FV1000Reader
-
- close(boolean) - Method in class loci.formats.in.GatanDM2Reader
-
- close(boolean) - Method in class loci.formats.in.GatanReader
-
- close(boolean) - Method in class loci.formats.in.GIFReader
-
- close(boolean) - Method in class loci.formats.in.HamamatsuVMSReader
-
- close(boolean) - Method in class loci.formats.in.HitachiReader
-
- close(boolean) - Method in class loci.formats.in.HRDGDFReader
-
- close(boolean) - Method in class loci.formats.in.ICSReader
-
- close(boolean) - Method in class loci.formats.in.IM3Reader
-
- close(boolean) - Method in class loci.formats.in.ImaconReader
-
- close(boolean) - Method in class loci.formats.in.ImageIOReader
-
- close(boolean) - Method in class loci.formats.in.ImagicReader
-
- close(boolean) - Method in class loci.formats.in.ImarisHDFReader
-
- close(boolean) - Method in class loci.formats.in.ImarisReader
-
- close(boolean) - Method in class loci.formats.in.IMODReader
-
- close(boolean) - Method in class loci.formats.in.ImprovisionTiffReader
-
- close(boolean) - Method in class loci.formats.in.ImspectorReader
-
- close(boolean) - Method in class loci.formats.in.InCell3000Reader
-
- close(boolean) - Method in class loci.formats.in.InCellReader
-
- close(boolean) - Method in class loci.formats.in.InveonReader
-
- close(boolean) - Method in class loci.formats.in.IPLabReader
-
- close(boolean) - Method in class loci.formats.in.IPWReader
-
- close(boolean) - Method in class loci.formats.in.IvisionReader
-
- close(boolean) - Method in class loci.formats.in.JEOLReader
-
- close(boolean) - Method in class loci.formats.in.JPEG2000Reader
-
- close(boolean) - Method in class loci.formats.in.JPEGReader
-
- close(boolean) - Method in class loci.formats.in.JPXReader
-
- close(boolean) - Method in class loci.formats.in.KhorosReader
-
- close(boolean) - Method in class loci.formats.in.KodakReader
-
- close(boolean) - Method in class loci.formats.in.L2DReader
-
- close(boolean) - Method in class loci.formats.in.LegacyQTReader
-
- close(boolean) - Method in class loci.formats.in.LeicaReader
-
- close(boolean) - Method in class loci.formats.in.LeicaSCNReader
-
- close(boolean) - Method in class loci.formats.in.LiFlimReader
-
- close(boolean) - Method in class loci.formats.in.LIFReader
-
- close(boolean) - Method in class loci.formats.in.LIMReader
-
- close(boolean) - Method in class loci.formats.in.MetamorphReader
-
- close(boolean) - Method in class loci.formats.in.MetamorphTiffReader
-
- close(boolean) - Method in class loci.formats.in.MIASReader
-
- close(boolean) - Method in class loci.formats.in.MicromanagerReader
-
- close(boolean) - Method in class loci.formats.in.MINCReader
-
- close(boolean) - Method in class loci.formats.in.MinimalTiffReader
-
- close(boolean) - Method in class loci.formats.in.MNGReader
-
- close(boolean) - Method in class loci.formats.in.MolecularImagingReader
-
- close(boolean) - Method in class loci.formats.in.MRCReader
-
- close(boolean) - Method in class loci.formats.in.MRWReader
-
- close(boolean) - Method in class loci.formats.in.NAFReader
-
- close(boolean) - Method in class loci.formats.in.NativeND2Reader
-
- close(boolean) - Method in class loci.formats.in.NativeQTReader
-
- close(boolean) - Method in class loci.formats.in.NDPIReader
-
- close(boolean) - Method in class loci.formats.in.NDPISReader
-
- close(boolean) - Method in class loci.formats.in.NiftiReader
-
- close(boolean) - Method in class loci.formats.in.NikonElementsTiffReader
-
- close(boolean) - Method in class loci.formats.in.NikonReader
-
- close(boolean) - Method in class loci.formats.in.NikonTiffReader
-
- close(boolean) - Method in class loci.formats.in.NRRDReader
-
- close(boolean) - Method in class loci.formats.in.OBFReader
-
- close(boolean) - Method in class loci.formats.in.OMETiffReader
-
- close(boolean) - Method in class loci.formats.in.OMEXMLReader
-
- close(boolean) - Method in class loci.formats.in.OpenlabRawReader
-
- close(boolean) - Method in class loci.formats.in.OpenlabReader
-
- close(boolean) - Method in class loci.formats.in.OperettaReader
-
- close(boolean) - Method in class loci.formats.in.PCIReader
-
- close(boolean) - Method in class loci.formats.in.PCORAWReader
-
- close(boolean) - Method in class loci.formats.in.PCXReader
-
- close(boolean) - Method in class loci.formats.in.PDSReader
-
- close(boolean) - Method in class loci.formats.in.PerkinElmerReader
-
- close(boolean) - Method in class loci.formats.in.PGMReader
-
- close(boolean) - Method in class loci.formats.in.PhotoshopTiffReader
-
- close(boolean) - Method in class loci.formats.in.PictReader
-
- close(boolean) - Method in class loci.formats.in.PQBinReader
-
- close(boolean) - Method in class loci.formats.in.PrairieReader
-
- close(boolean) - Method in class loci.formats.in.PSDReader
-
- close(boolean) - Method in class loci.formats.in.QuesantReader
-
- close(boolean) - Method in class loci.formats.in.RHKReader
-
- close(boolean) - Method in class loci.formats.in.SBIGReader
-
- close(boolean) - Method in class loci.formats.in.ScanrReader
-
- close(boolean) - Method in class loci.formats.in.ScreenReader
-
- close(boolean) - Method in class loci.formats.in.SDTReader
-
- close(boolean) - Method in class loci.formats.in.SIFReader
-
- close(boolean) - Method in class loci.formats.in.SimplePCITiffReader
-
- close(boolean) - Method in class loci.formats.in.SISReader
-
- close(boolean) - Method in class loci.formats.in.SlidebookReader
-
- close(boolean) - Method in class loci.formats.in.SlidebookTiffReader
-
- close(boolean) - Method in class loci.formats.in.SPCReader
-
- close(boolean) - Method in class loci.formats.in.SPEReader
-
- close(boolean) - Method in class loci.formats.in.SpiderReader
-
- close(boolean) - Method in class loci.formats.in.SVSReader
-
- close(boolean) - Method in class loci.formats.in.TargaReader
-
- close(boolean) - Method in class loci.formats.in.TCSReader
-
- close(boolean) - Method in class loci.formats.in.TextReader
-
- close(boolean) - Method in class loci.formats.in.TiffReader
-
- close(boolean) - Method in class loci.formats.in.TileJPEGReader
-
- close(boolean) - Method in class loci.formats.in.TillVisionReader
-
- close(boolean) - Method in class loci.formats.in.TopometrixReader
-
- close(boolean) - Method in class loci.formats.in.TrestleReader
-
- close(boolean) - Method in class loci.formats.in.UBMReader
-
- close(boolean) - Method in class loci.formats.in.UnisokuReader
-
- close(boolean) - Method in class loci.formats.in.VarianFDFReader
-
- close(boolean) - Method in class loci.formats.in.VeecoReader
-
- close(boolean) - Method in class loci.formats.in.VisitechReader
-
- close(boolean) - Method in class loci.formats.in.VolocityClippingReader
-
- close(boolean) - Method in class loci.formats.in.VolocityReader
-
- close(boolean) - Method in class loci.formats.in.WlzReader
-
- close(boolean) - Method in class loci.formats.in.ZeissCZIReader
-
- close() - Method in class loci.formats.in.ZeissCZIReader.Segment
-
- close(boolean) - Method in class loci.formats.in.ZeissLMSReader
-
- close(boolean) - Method in class loci.formats.in.ZeissLSMReader
-
- close(boolean) - Method in class loci.formats.in.ZeissTIFFReader
-
- close(boolean) - Method in class loci.formats.in.ZeissZVIReader
-
- close(boolean) - Method in class loci.formats.in.ZipReader
-
- close() - Method in class loci.formats.Memoizer
-
- close(boolean) - Method in class loci.formats.Memoizer
-
- close() - Method in interface loci.formats.Memoizer.Deser
-
- close() - Method in class loci.formats.Memoizer.KryoDeser
-
- close(boolean) - Method in class loci.formats.MinMaxCalculator
-
- close() - Method in class loci.formats.out.APNGWriter
-
- close() - Method in class loci.formats.out.AVIWriter
-
- close() - Method in class loci.formats.out.CellH5Writer
-
- close() - Method in class loci.formats.out.ICSWriter
-
- close() - Method in class loci.formats.out.JavaWriter
-
- close() - Method in class loci.formats.out.LegacyQTWriter
-
- close() - Method in class loci.formats.out.OMETiffWriter
-
- close() - Method in class loci.formats.out.OMEXMLWriter
-
- close() - Method in class loci.formats.out.QTWriter
-
- close() - Method in class loci.formats.out.TiffWriter
-
- close() - Method in class loci.formats.out.V3DrawWriter
-
- close() - Method in class loci.formats.out.WlzWriter
-
- close(boolean) - Method in class loci.formats.ReaderWrapper
-
- close() - Method in class loci.formats.ReaderWrapper
-
- close() - Method in interface loci.formats.services.EXIFService
-
- close() - Method in class loci.formats.services.EXIFServiceImpl
-
- close() - Method in interface loci.formats.services.JHDFService
-
Closes and resets the service.
- close() - Method in class loci.formats.services.JHDFServiceImpl
-
- close() - Method in interface loci.formats.services.JPEGTurboService
-
- close() - Method in class loci.formats.services.JPEGTurboServiceImpl
-
- close() - Method in interface loci.formats.services.MDBService
-
Close the currently initialized file.
- close() - Method in class loci.formats.services.MDBServiceImpl
-
- close() - Method in interface loci.formats.services.MetakitService
-
- close() - Method in class loci.formats.services.MetakitServiceImpl
-
- close() - Method in interface loci.formats.services.NetCDFService
-
Closes and resets the service.
- close() - Method in class loci.formats.services.NetCDFServiceImpl
-
- close() - Method in interface loci.formats.services.POIService
-
Close the current POI file system.
- close() - Method in class loci.formats.services.POIServiceImpl
-
- close() - Method in interface loci.formats.services.WlzService
-
Closes the file.
- close() - Method in class loci.formats.services.WlzServiceImpl
-
- close() - Method in class loci.formats.tiff.OnDemandLongArray
-
- close() - Method in class loci.formats.tiff.TiffSaver
-
Closes the output stream if not null.
- close() - Method in class loci.formats.WriterWrapper
-
- close() - Method in class loci.plugins.config.TextAreaWriter
-
Closing a TextAreaWriter does nothing.
- close() - Method in class loci.plugins.macro.LociFunctions
-
- close() - Method in class loci.plugins.util.VirtualImagePlus
-
- close() - Method in class loci.plugins.util.VirtualReader
-
- close() - Method in class loci.poi.poifs.filesystem.DocumentInputStream
-
Closes this input stream and releases any system resources
associated with the stream.
- close() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream
-
Closes this output stream and releases any system resources
associated with this stream.
- close() - Method in class loci.poi.util.BlockingInputStream
-
- close() - Method in class loci.tests.testng.FormatReaderTest
-
- close() - Method in class mdbtools.examples.MemoryRandomAccess
-
- close() - Method in class mdbtools.jdbc2.File
-
- close() - Method in class mdbtools.libmdb.MdbFile
-
- close() - Method in class mdbtools.libmdb.MdbHandle
-
- close() - Method in interface mdbtools.publicapi.RandomAccess
-
- close() - Method in class ome.jxr.JXRReader
-
Deprecated.
- close() - Method in class ome.jxr.parser.DatastreamParser
-
Deprecated.
- close() - Method in class ome.jxr.parser.FileParser
-
Deprecated.
- close() - Method in class ome.jxr.parser.IFDParser
-
Deprecated.
- close() - Method in class ome.jxr.parser.Parser
-
Deprecated.
- close() - Method in class ome.metakit.MetakitReader
-
Close the reader and release any resources in use.
- close() - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Free the native structures associated with this compressor instance.
- close() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Free the native structures associated with this decompressor instance.
- CLOSED_ARROW - Static variable in class loci.formats.in.ZeissLSMReader
-
- CLOSED_BEZIER - Static variable in class loci.formats.in.ZeissLSMReader
-
- CLOSED_CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty
-
- CLOSED_POLYGON - Static variable in class loci.poi.ddf.EscherShapePathProperty
-
- CLOSED_POLYLINE - Static variable in class loci.formats.in.ZeissLSMReader
-
- closeFileOnly() - Method in class loci.plugins.macro.LociFunctions
-
- cm - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- cm - Variable in class loci.formats.FormatWriter
-
Default color model.
- CM - Static variable in class ome.units.UNITS
-
- cNames - Variable in class loci.formats.in.ImprovisionTiffReader
-
- co - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- co2Percent - Variable in class loci.formats.in.ZeissCZIReader
-
- co2Percent - Variable in class ome.xml.model.ImagingEnvironment
-
- COARSE_FRAME_IFD - Static variable in class loci.formats.in.CellSensReader
-
- COARSE_PYRAMID_LEVEL - Static variable in class loci.formats.in.CellSensReader
-
- COBOL - Static variable in class loci.common.DateTools
-
- COBOL_EPOCH - Static variable in class loci.common.DateTools
-
- coc - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the COC marker segments found in main and first tile-part
header.
- COC - Static variable in interface jj2000.j2k.codestream.Markers
-
Coding style component (COC): 0xFF53
- COC_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for COC marker segment found
- cod - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the COD marker segments found in main and first tile-part
header.
- COD - Static variable in interface jj2000.j2k.codestream.Markers
-
Coding style default (COD): 0xFF52
- COD_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for COD marker segment found
- code - Variable in enum loci.formats.codec.CompressionType
-
Code for the compression.
- code - Variable in enum loci.formats.codec.JPEG2000BoxType
-
Code for the box type.
- code - Variable in enum loci.formats.codec.JPEG2000SegmentMarker
-
Code for the segment marker.
- code - Variable in class loci.formats.in.FV1000Reader
-
- code - Variable in enum loci.formats.tiff.IFDType
-
Code for the IFD type in the actual TIFF file.
- code - Variable in enum loci.formats.tiff.PhotoInterp
-
Code for the IFD type in the actual TIFF file.
- code - Variable in enum loci.formats.tiff.TiffCompression
-
Code for the TIFF compression in the actual TIFF file.
- codeBlockSize - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Specifies the maximum code-block size to use for tile-component.
- codeBlockSize - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Specifies the maximum code-block size to use for tile-component.
- codeBlockSize - Variable in class loci.formats.codec.JPEG2000CodecOptions
-
- Codec - Interface in loci.formats.codec
-
This class is an interface for any kind of compression or decompression.
- codec - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- codec - Variable in class loci.formats.gui.DataConverter
-
- codec - Variable in class loci.formats.in.NativeND2Reader
-
Codec to use when decompressing pixel data.
- codec - Variable in class loci.formats.in.NativeQTReader
-
Video codec used by this movie.
- codec - Variable in class loci.formats.out.LegacyQTWriter
-
The codec to use.
- codec - Variable in class loci.formats.out.QTWriter
-
The codec to use.
- codec - Variable in enum loci.formats.tiff.TiffCompression
-
TIFF compression codec.
- CODEC_ANIMATION - Static variable in class loci.formats.out.QTWriter
-
Value indicating Animation codec.
- CODEC_CINEPAK - Static variable in class loci.formats.out.QTWriter
-
Value indicating Cinepak codec.
- CODEC_H_263 - Static variable in class loci.formats.out.QTWriter
-
Value indicating H.263 codec.
- CODEC_MOTION_JPEG_B - Static variable in class loci.formats.out.QTWriter
-
Value indicating Motion JPEG-B codec.
- CODEC_MPEG_4 - Static variable in class loci.formats.out.QTWriter
-
Value indicating MPEG-4 codec.
- CODEC_RAW - Static variable in class loci.formats.out.QTWriter
-
Value indicating Raw codec.
- CODEC_SORENSON - Static variable in class loci.formats.out.QTWriter
-
Value indicating Sorenson codec.
- CODEC_SORENSON_3 - Static variable in class loci.formats.out.QTWriter
-
Value indicating Sorenson 3 codec.
- codecName - Variable in enum loci.formats.tiff.TiffCompression
-
Name of the TIFF compression codec.
- CodecOptions - Class in loci.formats.codec
-
Options for compressing and decompressing data.
- CodecOptions() - Constructor for class loci.formats.codec.CodecOptions
-
Construct a new CodecOptions.
- CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.CodecOptions
-
Construct a new CodecOptions using the given CodecOptions.
- codecOptions - Variable in class loci.formats.tiff.TiffParser
-
Codec options to be used when decoding compressed pixel data.
- CodedCBlk - Class in jj2000.j2k.entropy
-
This is the generic class to store coded (compressed) code-block.
- CodedCBlk() - Constructor for class jj2000.j2k.entropy.CodedCBlk
-
Creates a new CodedCBlk object wit the default values and without
allocating any space for its members.
- CodedCBlk(int, int, int, byte[]) - Constructor for class jj2000.j2k.entropy.CodedCBlk
-
Creates a new CodedCBlk object with the specified values.
- CodedCBlkDataSrcDec - Interface in jj2000.j2k.entropy.decoder
-
This interface defines a source of entropy coded data and methods to
transfer it in a code-block by code-block basis.
- CodedCBlkDataSrcEnc - Interface in jj2000.j2k.entropy.encoder
-
This interface defines a source of entropy coded data and methods to
transfer it in a code-block by code-block basis.
- CodedEnum - Interface in loci.common.enumeration
-
Enumeration which is coded.
- CODEPAGE - Static variable in class loci.poi.hssf.model.Workbook
-
constant used to set the "codepage" wherever "codepage" is set in records
(which is duplciated in more than one record)
- CODEPAGE - Static variable in class loci.poi.hssf.record.CodepageRecord
-
the likely correct value for CODEPAGE (at least for US versions).
- CODEPAGE - Static variable in class loci.poi.hssf.record.InterfaceHdrRecord
-
suggested (and probably correct) default
- CodepageRecord - Class in loci.poi.hssf.record
-
Title: Codepage Record
- CodepageRecord() - Constructor for class loci.poi.hssf.record.CodepageRecord
-
- CodepageRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CodepageRecord
-
Constructs a CodepageRecord and sets its fields appropriately
- codepageToEncoding(int) - Static method in class loci.poi.hpsf.VariantSupport
-
Turns a codepage number into the equivalent character encoding's
name.
- codeSegSymbol - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Inserts an error resilience segmentation symbol in the MQ codeword
at the end of each bit-plane (cleanup pass).
- codeSize_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor
-
base underlying code size of data being compressed 8 for TIFF, 1 to 8 for GIF
- CODESTREAM_VERSION - Static variable in class ome.jxr.constants.File
-
Deprecated.
- codeStreamLength - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
The lengths of the codestreams in the fileformat
- CodestreamManipulator - Class in jj2000.j2k.util
-
This class takes a legal JPEG 2000 codestream and performs some
manipulation on it.
- CodestreamManipulator(File, int, int, boolean, boolean, boolean, boolean) - Constructor for class jj2000.j2k.util.CodestreamManipulator
-
Instantiates a codestream manipulator..
- codestreamOffset - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Offset to first contiguous codestream.
- codestreamPixelType - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Pixel type as specified in the JPEG 2000 codestream..
- codeStreamPos - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
The positions of the codestreams in the fileformat
- codestreamSizeC - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Number of channels the image as specified in the JPEG 2000 codestream.
- codestreamSizeX - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Width of the image as specified in the JPEG 2000 codestream.
- codestreamSizeY - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Height of the image as specified in the JPEG 2000 codestream.
- CodestreamWriter - Class in jj2000.j2k.codestream.writer
-
This is the abstract class for writing to a bit stream.
- CodestreamWriter(int) - Constructor for class jj2000.j2k.codestream.writer.CodestreamWriter
-
Allocates this object and initializes the maximum numner of
bytes.
- codeSymbol(int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
This function performs the arithmetic encoding of one symbol.
- codeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
This function performs the arithmetic encoding of several symbols
together.
- codingRangeCbCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- codingRangeY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- codingRangeY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- col - Variable in class loci.formats.in.CellVoyagerReader.WellInfo
-
- col - Variable in class loci.formats.in.OperettaReader.Plane
-
- col - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- col - Variable in class loci.poi.hssf.usermodel.HSSFComment
-
- col - Variable in class loci.poi.hssf.util.CellReference
-
- col - Variable in class ome.metakit.ColumnMap
-
- col1 - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor
-
- col2 - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor
-
- col_fixed_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
-
- col_from - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion
-
upper right hand corner col
- col_num - Variable in class mdbtools.libmdb.MdbColumn
-
- col_num_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
-
- col_prec - Variable in class mdbtools.libmdb.MdbColumn
-
- col_scale - Variable in class mdbtools.libmdb.MdbColumn
-
- col_size - Variable in class mdbtools.libmdb.MdbColumn
-
- col_size_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
-
- col_to - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion
-
lower right hand corner col
- col_type - Variable in class mdbtools.libmdb.MdbColumn
-
- colAbs - Variable in class loci.poi.hssf.util.CellReference
-
- colapsed - Static variable in class loci.poi.hssf.record.RowRecord
-
- colBreaks - Variable in class loci.poi.hssf.model.Sheet
-
- colCount - Variable in class loci.formats.in.BaseZeissReader
-
- colFrom - Variable in class loci.poi.hssf.util.Region
-
- collapseColInfoRecords(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
-
- collapseColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
-
- collapsed - Static variable in class loci.poi.hssf.record.ColumnInfoRecord
-
- collapseRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
-
- collect - Variable in class mdbtools.libmdb.MdbStatistics
-
- collection - Variable in class loci.formats.in.LeicaHandler
-
- collection - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- COLLECTION_VOLUME - Static variable in class loci.formats.in.CellSensReader
-
- colName - Variable in class loci.formats.in.InCellReader
-
- color - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- color - Variable in class loci.formats.in.LeicaHandler.ROI
-
- color - Variable in class loci.formats.in.