public class Well extends AbstractOMEModelObject
Modifier and Type | Field and Description |
---|---|
private List<Annotation> |
annotationLinks |
private Color |
color |
private NonNegativeInteger |
column |
private String |
externalDescription |
private String |
externalIdentifier |
private String |
id |
private static org.slf4j.Logger |
LOGGER
Logger for this class.
|
static String |
NAMESPACE |
private Plate |
plate |
private Reagent |
reagent |
private NonNegativeInteger |
row |
private String |
type |
private List<WellSample> |
wellSamples |
Constructor and Description |
---|
Well()
Default constructor.
|
Well(Element element,
OMEModel model)
Constructs Well recursively from an XML DOM tree.
|
Well(Well orig)
Copy constructor.
|
getChildrenByTagName, stripNamespacePrefix
public static final String NAMESPACE
private static final org.slf4j.Logger LOGGER
private String externalIdentifier
private NonNegativeInteger column
private String externalDescription
private Color color
private String type
private String id
private NonNegativeInteger row
private List<WellSample> wellSamples
private Reagent reagent
private List<Annotation> annotationLinks
private Plate plate
public Well()
public Well(Element element, OMEModel model) throws EnumerationException
element
- Root of the XML DOM tree to construct a model object
graph from.model
- Handler for the OME model which keeps track of instances
and references seen during object population.EnumerationException
- If there is an error instantiating an
enumeration during model object creation.public Well(Well orig)
public void update(Element element, OMEModel model) throws EnumerationException
update
in interface OMEModelObject
update
in class AbstractOMEModelObject
element
- Root of the XML DOM tree to construct a model object
graph from.model
- Handler for the OME model which keeps track of instances
and references seen during object population.EnumerationException
- If there is an error instantiating an
enumeration during model object creation.public boolean link(Reference reference, OMEModelObject o)
OMEModelObject
link
in interface OMEModelObject
link
in class AbstractOMEModelObject
reference
- The type qualifier for the reference. This should
be the corresponding reference type for o
. If, for example,
o
is of type Image
, reference
MUST be of type ImageRef
.o
- Model object to link to.true
if this model object was able to handle the
reference, false
otherwise.public String getExternalIdentifier()
public void setExternalIdentifier(String externalIdentifier)
public NonNegativeInteger getColumn()
public void setColumn(NonNegativeInteger column)
public String getExternalDescription()
public void setExternalDescription(String externalDescription)
public Color getColor()
public void setColor(Color color)
public String getType()
public void setType(String type)
public String getID()
public void setID(String id)
public NonNegativeInteger getRow()
public void setRow(NonNegativeInteger row)
public int sizeOfWellSampleList()
public List<WellSample> copyWellSampleList()
public WellSample getWellSample(int index)
public WellSample setWellSample(int index, WellSample wellSample)
public void addWellSample(WellSample wellSample)
public void removeWellSample(WellSample wellSample)
public Reagent getLinkedReagent()
public void linkReagent(Reagent o)
public void unlinkReagent(Reagent o)
public int sizeOfLinkedAnnotationList()
public List<Annotation> copyLinkedAnnotationList()
public Annotation getLinkedAnnotation(int index)
public Annotation setLinkedAnnotation(int index, Annotation o)
public boolean linkAnnotation(Annotation o)
public boolean unlinkAnnotation(Annotation o)
public Plate getPlate()
public void setPlate(Plate plate_BackReference)
public Element asXMLElement(Document document)
OMEModelObject
asXMLElement
in interface OMEModelObject
asXMLElement
in class AbstractOMEModelObject
document
- Destination document for element creation, etc.protected Element asXMLElement(Document document, Element Well_element)
AbstractOMEModelObject
asXMLElement
in class AbstractOMEModelObject
document
- Destination document for element creation, etc.Well_element
- Element from the subclass. If null a new
element will be created of this class.element
populated with properties from this class.Copyright © 2016 Open Microscopy Environment