public class ROI extends AbstractOMEModelObject
Modifier and Type | Field and Description |
---|---|
private List<Annotation> |
annotationLinks |
private String |
description |
private List<Folder> |
folderLinks |
private String |
id |
private List<Image> |
imageLinks |
private static org.slf4j.Logger |
LOGGER
Logger for this class.
|
private List<MicrobeamManipulation> |
microbeamManipulationLinks |
private String |
name |
static String |
NAMESPACE |
private Union |
union |
Constructor and Description |
---|
ROI()
Default constructor.
|
ROI(Element element,
OMEModel model)
Constructs ROI recursively from an XML DOM tree.
|
ROI(ROI orig)
Copy constructor.
|
getChildrenByTagName, stripNamespacePrefix
public static final String NAMESPACE
private static final org.slf4j.Logger LOGGER
private String id
private String name
private Union union
private List<Annotation> annotationLinks
private String description
private List<MicrobeamManipulation> microbeamManipulationLinks
public ROI()
public ROI(Element element, OMEModel model) throws EnumerationException
element
- Root of the XML DOM tree to construct a model object
graph from.model
- Handler for the OME model which keeps track of instances
and references seen during object population.EnumerationException
- If there is an error instantiating an
enumeration during model object creation.public ROI(ROI orig)
public void update(Element element, OMEModel model) throws EnumerationException
update
in interface OMEModelObject
update
in class AbstractOMEModelObject
element
- Root of the XML DOM tree to construct a model object
graph from.model
- Handler for the OME model which keeps track of instances
and references seen during object population.EnumerationException
- If there is an error instantiating an
enumeration during model object creation.public boolean link(Reference reference, OMEModelObject o)
OMEModelObject
link
in interface OMEModelObject
link
in class AbstractOMEModelObject
reference
- The type qualifier for the reference. This should
be the corresponding reference type for o
. If, for example,
o
is of type Image
, reference
MUST be of type ImageRef
.o
- Model object to link to.true
if this model object was able to handle the
reference, false
otherwise.public String getID()
public void setID(String id)
public String getName()
public void setName(String name)
public Union getUnion()
public void setUnion(Union union)
public int sizeOfLinkedAnnotationList()
public List<Annotation> copyLinkedAnnotationList()
public Annotation getLinkedAnnotation(int index)
public Annotation setLinkedAnnotation(int index, Annotation o)
public boolean linkAnnotation(Annotation o)
public boolean unlinkAnnotation(Annotation o)
public String getDescription()
public void setDescription(String description)
public int sizeOfLinkedImageList()
public Image getLinkedImage(int index)
public boolean linkImage(Image o)
public boolean unlinkImage(Image o)
public int sizeOfLinkedMicrobeamManipulationList()
public List<MicrobeamManipulation> copyLinkedMicrobeamManipulationList()
public MicrobeamManipulation getLinkedMicrobeamManipulation(int index)
public MicrobeamManipulation setLinkedMicrobeamManipulation(int index, MicrobeamManipulation o)
public boolean linkMicrobeamManipulation(MicrobeamManipulation o)
public boolean unlinkMicrobeamManipulation(MicrobeamManipulation o)
public int sizeOfLinkedFolderList()
public Folder getLinkedFolder(int index)
public boolean linkFolder(Folder o)
public boolean unlinkFolder(Folder o)
public Element asXMLElement(Document document)
OMEModelObject
asXMLElement
in interface OMEModelObject
asXMLElement
in class AbstractOMEModelObject
document
- Destination document for element creation, etc.protected Element asXMLElement(Document document, Element ROI_element)
AbstractOMEModelObject
asXMLElement
in class AbstractOMEModelObject
document
- Destination document for element creation, etc.ROI_element
- Element from the subclass. If null a new
element will be created of this class.element
populated with properties from this class.Copyright © 2016 Open Microscopy Environment