loci.formats.in

Class ZeissCZIReader.SubBlock

java.lang.Object

loci.formats.in.ZeissCZIReader.Segment

loci.formats.in.ZeissCZIReader.SubBlock

Enclosing class:

ZeissCZIReader

 class ZeissCZIReader.SubBlock
extends ZeissCZIReader.Segment

Segment with ID "ZISRAWSUBBLOCK".

Field Summary

Fields

Modifier and Type	Field and Description
int	attachmentSize
int	col
int	coreIndex
private long	dataOffset
long	dataSize
ZeissCZIReader.DirectoryEntry	directoryEntry
private Double	exposureTime
String	metadata
int	metadataSize
int	planeIndex
int	resolutionIndex
int	row
private Length	stageX
private Length	stageY
private Length	stageZ
private Double	timestamp
int	x
int	y

Fields inherited from class loci.formats.in.ZeissCZIReader.Segment

allocatedSize, filename, id, startingPosition, stream, usedSize

Constructor Summary

Constructors

Constructor and Description
ZeissCZIReader.SubBlock()
ZeissCZIReader.SubBlock(ZeissCZIReader.SubBlock model)

Method Summary

Methods

Modifier and Type	Method and Description
void	fillInData()
private void	parseMetadata()
byte[]	readPixelData()
byte[]	readPixelData(RandomAccessInputStream s)
String	toString()

Methods inherited from class loci.formats.in.ZeissCZIReader.Segment

close, getStream

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

metadataSize

public int metadataSize

attachmentSize

public int attachmentSize

dataSize

public long dataSize

directoryEntry

public ZeissCZIReader.DirectoryEntry directoryEntry

metadata

public String metadata

coreIndex

public int coreIndex

resolutionIndex

public int resolutionIndex

planeIndex

public int planeIndex

dataOffset

private long dataOffset

stageX

private Length stageX

stageY

private Length stageY

stageZ

private Length stageZ

timestamp

private Double timestamp

exposureTime

private Double exposureTime

x

public int x

y

public int y

row

public int row

col

public int col

Constructor Detail

ZeissCZIReader.SubBlock

public ZeissCZIReader.SubBlock()

ZeissCZIReader.SubBlock

public ZeissCZIReader.SubBlock(ZeissCZIReader.SubBlock model)

Method Detail

toString

public String toString()

Overrides:

toString in class Object

fillInData

public void fillInData()
                throws IOException

Overrides:

fillInData in class ZeissCZIReader.Segment

Throws:

IOException

readPixelData

public byte[] readPixelData()
                     throws FormatException,
                            IOException

Throws:

FormatException

IOException

readPixelData

public byte[] readPixelData(RandomAccessInputStream s)
                     throws FormatException,
                            IOException

Throws:

FormatException

IOException

parseMetadata

private void parseMetadata()
                    throws IOException

Throws:

IOException