A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

A

a - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The current interval

a - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The current interval

a00 - Variable in class ome.xml.model.AffineTransform

a01 - Variable in class ome.xml.model.AffineTransform

a02 - Variable in class ome.xml.model.AffineTransform

a10 - Variable in class ome.xml.model.AffineTransform

a11 - Variable in class ome.xml.model.AffineTransform

a12 - Variable in class ome.xml.model.AffineTransform

A4_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

A5_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

abort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

Abort(String) - Method in class loci.poi.hssf.model.FormulaParser

Report Error and Halt

abortable - Variable in class loci.poi.hssf.eventmodel.EventRecordFactory

instance is abortable or not

abortable - Variable in class loci.poi.hssf.eventmodel.ListenerWrapper

AbortableHSSFListener - Class in loci.poi.hssf.eventusermodel

Interface for use with the HSSFRequest and HSSFEventFactory.

AbortableHSSFListener() - Constructor for class loci.poi.hssf.eventusermodel.AbortableHSSFListener

abortableProcessEvents(HSSFRequest, InputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a DocumentInputStream into essentially Record events.

abortableProcessRecord(Record) - Method in class loci.poi.hssf.eventusermodel.AbortableHSSFListener

Process an HSSF Record.

abortableProcessWorkbookEvents(HSSFRequest, POIFSFileSystem) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a file into essentially record events.

About - Class in loci.plugins

Displays a small information dialog about the Bio-Formats Plugins package.

About() - Constructor for class loci.plugins.About

about() - Static method in class loci.plugins.About

abs() - Method in class loci.plugins.util.RecordedImageProcessor

absoluteDay(Calendar) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a Calendar, return the number of days since 1900/12/31.

absoluteTime - Variable in class loci.formats.in.PrairieMetadata.Frame

absoluteTime attribute of this <Frame>.

AbstractEscherHolderRecord - Class in loci.poi.hssf.record

The escher container record is used to hold escher records.

AbstractEscherHolderRecord() - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord

AbstractEscherHolderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord

Constructs a Bar record and sets its fields appropriately.

AbstractFunctionPtg - Class in loci.poi.hssf.record.formula

This class provides the base functionality for Excel sheet functions There are two kinds of function Ptgs - tFunc and tFuncVar Therefore, this class will have ONLY two subclasses

AbstractFunctionPtg() - Constructor for class loci.poi.hssf.record.formula.AbstractFunctionPtg

AbstractNIOHandle - Class in loci.common

A wrapper for buffered NIO logic that implements the IRandomAccess interface.

AbstractNIOHandle() - Constructor for class loci.common.AbstractNIOHandle

AbstractOMEModelObject - Class in ome.xml.model

AbstractOMEModelObject() - Constructor for class ome.xml.model.AbstractOMEModelObject

AbstractOMEXMLMetadata - Class in loci.formats.ome

AbstractOMEXMLMetadata() - Constructor for class loci.formats.ome.AbstractOMEXMLMetadata

AbstractOMEXMLMetadata - Class in ome.xml.meta

A utility class for constructing and manipulating OME-XML DOMs.

AbstractOMEXMLMetadata() - Constructor for class ome.xml.meta.AbstractOMEXMLMetadata

Creates a new OME-XML metadata object.

AbstractService - Class in loci.common.services

AbstractService() - Constructor for class loci.common.services.AbstractService

AbstractShape - Class in loci.poi.hssf.model

An abstract shape is the lowlevel model for a shape.

AbstractShape() - Constructor for class loci.poi.hssf.model.AbstractShape

ac - Variable in class loci.formats.in.FakeReader

Channel of last opened image plane.

accept(File) - Method in class loci.formats.gui.ComboFileFilter

Accepts files with the proper filename prefix.

accept(File) - Method in class loci.formats.gui.ExtensionFileFilter

Accepts files with the proper extensions.

accept(File) - Method in class loci.formats.gui.FormatFileFilter

Accepts files in accordance with the file format reader.

accept(File) - Method in class loci.formats.gui.NoExtensionFileFilter

Accepts files with no extension.

accept(String) - Method in class loci.formats.NumberFilter

Tests if a specified file should be included in a file list.

accept(File) - Method in class loci.formats.NumberFilter

Tests if a specified file should be included in a file list.

ACCESS_TIME - Static variable in class loci.tests.testng.Configuration

accumulate - Variable in class loci.formats.in.SDTInfo

ACCUMULATION - Static variable in class loci.formats.in.CellSensReader

ACCUMULATION_MODE - Static variable in class loci.formats.in.CellSensReader

acquire - Variable in class loci.formats.in.ZeissLSMReader.SubBlock

acquiredDate - Variable in class loci.formats.in.LIFReader

acquiredDate - Variable in class loci.formats.in.ZeissCZIReader

acquiredDate - Variable in class loci.formats.in.ZeissLSMReader

ACQUISITION_CYCLE_TIME - Static variable in class loci.formats.in.FluoviewReader

ACQUISITION_FILE - Static variable in class loci.formats.in.ScanrReader

ACQUISITION_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

ACQUISITION_TIME_TAG - Static variable in class loci.formats.in.FlowSightReader

acquisitionDate - Variable in class loci.formats.in.BioRadSCNReader

acquisitionDate - Variable in class loci.formats.in.SISReader

acquisitionDate - Variable in class ome.xml.model.Image

acquisitionDates - Variable in class loci.formats.in.FlexReader

acquisitionMode - Variable in class loci.formats.in.ZeissCZIReader.Channel

acquisitionMode - Variable in class ome.xml.model.Channel

AcquisitionMode - Enum in ome.xml.model.enums

AcquisitionMode(String) - Constructor for enum ome.xml.model.enums.AcquisitionMode

AcquisitionModeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for AcquisitionMode.

AcquisitionModeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

acquisitions - Variable in class loci.formats.in.ZeissCZIReader

acquisitionTime - Variable in class loci.formats.in.CellSensReader.Pyramid

act - Variable in class loci.formats.in.GIFReader

Active color table.

actionPerformed(ActionEvent) - Method in class loci.formats.gui.CacheComponent

Handles combo box changes.

actionPerformed(ActionEvent) - Method in class loci.formats.gui.DataConverter

actionPerformed(ActionEvent) - Method in class loci.formats.gui.ImageViewer

Handles menu commands.

actionPerformed(ActionEvent) - Method in class loci.formats.tools.EditTiffG

actionPerformed(ActionEvent) - Method in class loci.plugins.config.ConfigWindow

actionPerformed(ActionEvent) - Method in class loci.plugins.in.SeriesDialog

actionPerformed(ActionEvent) - Method in class loci.plugins.shortcut.ShortcutPanel

Handles button presses.

actionPerformed(ActionEvent) - Method in class loci.plugins.util.DataBrowser

actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow

actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow.SearchBox

active - Variable in class loci.formats.in.FV1000Reader.ChannelData

active - Variable in class loci.formats.in.LeicaHandler.Detector

active - Variable in class loci.formats.in.LeicaReader.Detector

ACTIVE_CHANNEL - Static variable in class loci.formats.in.CellSensReader

ACTIVE_LAYER_INDEX_VECTOR - Static variable in class loci.formats.in.CellSensReader

ACTIVE_LAYER_VECTOR - Static variable in class loci.formats.in.CellSensReader

ACTIVE_PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_PANE_UPER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord

ACTIVE_STACK_DIMENSION - Static variable in class loci.formats.in.CellSensReader

activeChannelIndices - Variable in class loci.formats.in.LeicaReader

activeChannels - Variable in class loci.formats.in.PrairieMetadata

Set of active channel indices.

activeDetector - Variable in class loci.formats.in.LIFReader

activePane - Variable in class loci.poi.hssf.util.PaneInformation

activePlane - Variable in class loci.formats.in.OperettaReader.OperettaHandler

activeSrcHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The height of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.

activeSrcMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The X coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.

activeSrcMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The Y coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.

activeSrcWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The width of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.

ACTUAL_TEMPERATURE - Static variable in class loci.formats.in.FluoviewReader

actualBytes - Variable in class jj2000.j2k.entropy.encoder.EBCOTLayer

The actual number of bytes which are consumed by the the current and any previous layers.

adcDE - Variable in class loci.formats.in.SDTInfo

ADC sample delay (SPC-930).

adcRE - Variable in class loci.formats.in.SDTInfo

adcZoom - Variable in class loci.formats.in.SDTInfo

add(byte) - Method in class loci.formats.codec.ByteVector

add(byte[]) - Method in class loci.formats.codec.ByteVector

add(byte[], int, int) - Method in class loci.formats.codec.ByteVector

add(byte[], int, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileCache

add(int[], int, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileCache

add(double) - Method in class loci.plugins.util.RecordedImageProcessor

add(int) - Method in class loci.plugins.util.RecordedImageProcessor

Add() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate an Add

add(int, Record) - Method in class loci.poi.hssf.model.WorkbookRecordList

ADD - Static variable in class loci.poi.hssf.record.formula.AddPtg

ADD - Static variable in class loci.poi.hssf.record.formula.UnaryPlusPtg

add(int, double) - Method in class loci.poi.util.DoubleList

add the specfied value at the specified index

add(double) - Method in class loci.poi.util.DoubleList

Appends the specified element to the end of this list

add(int, int) - Method in class loci.poi.util.IntList

add the specfied value at the specified index

add(int) - Method in class loci.poi.util.IntList

Appends the specified element to the end of this list

add(Object) - Method in class loci.poi.util.IntMapper

Appends the specified element to the end of this list

add(int, short) - Method in class loci.poi.util.ShortList

add the specfied value at the specified index

add(short) - Method in class loci.poi.util.ShortList

Appends the specified element to the end of this list

add(Integer) - Method in class ome.units.unit.Unit

add(Double) - Method in class ome.units.unit.Unit

add(T) - Method in class ome.xml.model.ReferenceList

add(int, T) - Method in class ome.xml.model.ReferenceList

add1DBits(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Get code for run and add to compressed bitstream.

add2DBits(byte[], int, int[][], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Place entry from mode table into compressed bitstream.

addAll(DoubleList) - Method in class loci.poi.util.DoubleList

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.

addAll(int, DoubleList) - Method in class loci.poi.util.DoubleList

Inserts all of the elements in the specified collection into this list at the specified position.

addAll(IntList) - Method in class loci.poi.util.IntList

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.

addAll(int, IntList) - Method in class loci.poi.util.IntList

Inserts all of the elements in the specified collection into this list at the specified position.

addAll(ShortList) - Method in class loci.poi.util.ShortList

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.

addAll(int, ShortList) - Method in class loci.poi.util.ShortList

Inserts all of the elements in the specified collection into this list at the specified position.

addAll(Collection<? extends T>) - Method in class ome.xml.model.ReferenceList

addAll(int, Collection<? extends T>) - Method in class ome.xml.model.ReferenceList

addAllowedTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Adds a TIFFTagSet object to the list of allowed tag sets.

addArea(int, short, int, short) - Method in class loci.poi.hssf.record.MergeCellsRecord

Add an area to consider a merged cell.

addArgumentPointer() - Method in class loci.poi.hssf.model.FormulaParser

Adds a pointer to the last token to the latest function argument list.

addBinData(BinData) - Method in class ome.xml.model.Mask

addBinData(BinData) - Method in class ome.xml.model.Pixels

addBooleanAnnotation(BooleanAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addBreak(short, short, short) - Method in class loci.poi.hssf.record.PageBreakRecord

Adds the page break at the specified parameters

addBSERecord(EscherBSERecord) - Method in class loci.poi.hssf.model.Workbook

addByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer

Adds the specified data to the end of the byte array stream.

addCacheListener(CacheListener) - Method in class loci.formats.cache.Cache

addCacheListener(CacheListener) - Method in interface loci.formats.cache.CacheReporter

Adds a listener for status update events.

addCacheListener(CacheListener) - Method in class loci.formats.cache.CacheStrategy

addCell(HSSFCell) - Method in class loci.poi.hssf.usermodel.HSSFRow

used internally to add a cell.

addCellOffset(short) - Method in class loci.poi.hssf.record.DBCellRecord

addChannel(Channel) - Method in class ome.xml.model.Pixels

addChar(char, int) - Method in class loci.poi.hssf.usermodel.FontDetails

addChars(char[], int[]) - Method in class loci.poi.hssf.usermodel.FontDetails

AddCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

addCheckbox(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog

Adds a checkbox to the given dialog object corresponding to the boolean option identified by the specified key.

addChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty

Add a new child to the collection of children

addChild(Property) - Method in interface loci.poi.poifs.property.Parent

Add a new child to the collection of children

addChildNode(IIOMetadataNode, String, Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

addChildNode(IIOMetadataNode, String, Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

addChildRecord(EscherRecord) - Method in class loci.poi.ddf.EscherContainerRecord

addChildRecord(EscherRecord) - Method in class loci.poi.ddf.UnknownEscherRecord

addChoice(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog

Adds a choice to the given dialog object corresponding to the string option identified by the specified key.

addClass(Class<? extends T>) - Method in class loci.formats.ClassList

Adds the given class, which must be assignable to the base class, to the list.

addCluster(int, int) - Method in class loci.poi.ddf.EscherDggRecord

addColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Adds a new color into an empty color slot.

addColumn(Object) - Method in class mdbtools.dbengine.sql.Select

addComment(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

addCommentAnnotation(CommentAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addDataset(Dataset) - Method in class ome.xml.model.OME

addDbcell(int) - Method in class loci.poi.hssf.record.IndexRecord

addDetector(Detector) - Method in class ome.xml.model.Instrument

addDichroic(Dichroic) - Method in class ome.xml.model.Instrument

addDirectory(String, int) - Method in class loci.formats.in.L2DReader

Recursively add all of the files in the given directory to the used file list.

addDirectory(DirectoryProperty) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

add a new DirectoryProperty

addDocument(POIFSDocument) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

add a new POIFSDocument

addDoubleAnnotation(DoubleAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addElements() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

Adds the elements into this format object based on the XML schema and DTD.

addElements() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

Adds the elements into this format object based on the XML schema and DTD.

addEntry(Comparable<Object>, DefaultListModel) - Static method in class loci.plugins.config.ConfigWindow

addEOFB(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Add an End-of-Facsimile-Block (EOFB == 0x001001) to the compressed bitstream.

addEOL(boolean, boolean, boolean, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Add an End-of-Line (EOL == 0x001) to the compressed bitstream with optional byte alignment.

addEscherProperty(EscherProperty) - Method in class loci.poi.ddf.EscherOptRecord

Add a property to this record.

addEscherRecord(int, EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

addEscherRecord(EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

addExperiment(Experiment) - Method in class ome.xml.model.OME

addExperimenter(Experimenter) - Method in class ome.xml.model.OME

addExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.OME

addFileAnnotation(FileAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addFileToList(String, boolean) - Method in class loci.formats.in.DicomReader

Determine if the given file belongs in the same dataset as this file.

addFilter(Filter) - Method in class ome.xml.model.Instrument

addFilterSet(FilterSet) - Method in class ome.xml.model.Instrument

addFormatRun(UnicodeString.FormatRun) - Method in class loci.poi.hssf.record.UnicodeString

Adds a font run to the formatted string.

addGlobalMeta(String, Object) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, boolean) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, byte) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, short) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, int) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, long) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, float) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, double) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMeta(String, char) - Method in class loci.formats.FormatReader

Adds an entry to the global metadata table.

addGlobalMetaList(String, Object) - Method in class loci.formats.FormatReader

Add the given key/value pair to the global metadata hashtable.

addGroupBy(FQColumn) - Method in class mdbtools.dbengine.sql.Select

addImage(Image) - Method in class ome.xml.model.OME

addInfo(int, String) - Method in class loci.formats.in.DicomReader

addInfo(int, int) - Method in class loci.formats.in.DicomReader

addInfoRecord(ExtSSTInfoSubRecord) - Method in class loci.poi.hssf.record.ExtSSTRecord

addInstrument(Instrument) - Method in class ome.xml.model.OME

additionalMakeup - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

addLightSource(LightSource) - Method in class ome.xml.model.Instrument

addLightSourceSettings(LightSourceSettings) - Method in class ome.xml.model.MicrobeamManipulation

addListAnnotation(ListAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addListener(HSSFListener, short) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest

add an event listener for a particular record type.

addListenerForAllRecords(HSSFListener) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest

This is the equivilent of calling addListener(myListener, sid) for EVERY record in the loci.poi.hssf.record package.

addLongAnnotation(LongAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addMapAnnotation(MapAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addMergedRegion(int, short, int, short) - Method in class loci.poi.hssf.model.Sheet

addMergedRegion(Region) - Method in class loci.poi.hssf.usermodel.HSSFSheet

adds a merged region of cells (hence those cells form one)

addMeta(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader

Adds an entry to the specified Hashtable.

addMetadataOnly(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Insert a MetadataOnly element under the Image specified by 'index' in the given OME-XML metadata object.

addMetadataOnly(OMEXMLMetadata, int, boolean) - Method in interface loci.formats.services.OMEXMLService

Insert a MetadataOnly element under the Image specified by 'index' in the given OME-XML metadata object.

addMetadataOnly(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

addMetadataOnly(OMEXMLMetadata, int, boolean) - Method in class loci.formats.services.OMEXMLServiceImpl

addMetaList(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader

Add the given key/value pair to the given hashtable.

addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experiment

addModelObject(String, OMEModelObject) - Method in interface ome.xml.model.OMEModel

addModelObject(String, OMEModelObject) - Method in class ome.xml.model.OMEModelImpl

addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Adds ModuloAlong* annotations to the given OME-XML metadata object, using the given CoreMetadata object to determine modulo dimensions.

addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

addName(NameRecord) - Method in class loci.poi.hssf.model.Workbook

creates new name

addNode(Box) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

addNTP(int, int) - Method in class jj2000.j2k.codestream.reader.CBlkInfo

Adds the number of new truncation for specified layer.

addObjective(Objective) - Method in class ome.xml.model.Instrument

addOptPoint(float, int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Adds a new optimization point, with target bitrate 'brate' and with 'elyrs' (unoptimized) extra layers after it.

addOrderBy(OrderBy) - Method in class mdbtools.dbengine.sql.Select

addPicture(byte[], int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Adds a picture to the workbook.

addPlane(Plane) - Method in class ome.xml.model.Pixels

addPlate(Plate) - Method in class ome.xml.model.OME

addPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Plate

addPossible(String) - Method in class loci.plugins.prefs.StringOption

Adds a possible value to the list.

addProject(Project) - Method in class ome.xml.model.OME

addProp(HashMap<String, String>, String, String, HashMap<String, String>) - Method in class loci.plugins.config.ConfigWindow

addProp(int, EscherPropertyMetaData) - Static method in class loci.poi.ddf.EscherProperties

addProperty(Property) - Method in class loci.poi.poifs.property.PropertyTable

Add a property to the list of properties we manage

AddPtg - Class in loci.poi.hssf.record.formula

Addition operator PTG the "+" binomial operator.

AddPtg() - Constructor for class loci.poi.hssf.record.formula.AddPtg

Creates new AddPtg

AddPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AddPtg

addPtyFiles() - Method in class loci.formats.in.FV1000Reader

addReagent(Reagent) - Method in class ome.xml.model.Screen

addReference(OMEModelObject, Reference) - Method in interface ome.xml.model.OMEModel

addReference(OMEModelObject, Reference) - Method in class ome.xml.model.OMEModelImpl

addREFRecord(ExternSheetSubRecord) - Method in class loci.poi.hssf.record.ExternSheetRecord

adds REF struct (ExternSheetSubRecord)

addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

addROI(ROI) - Method in class ome.xml.model.OME

addRow(RowRecord) - Method in class loci.poi.hssf.model.Sheet

Adds a row record to the sheet

addRow(HSSFRow, boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

add a row to the sheet

addRow(Object[]) - Method in class mdbtools.dbengine.MemoryData

Add a row of data

addScreen(Screen) - Method in class ome.xml.model.OME

addScrollBars(Container) - Static method in class loci.plugins.util.WindowTools

Adds AWT scroll bars to the given container.

addSection(Section) - Method in class loci.poi.hpsf.MutablePropertySet

Adds a section to this property set.

addSection(Section) - Method in class loci.poi.hpsf.SpecialPropertySet

addSeriesMeta(String, Object) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, boolean) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, byte) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, short) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, int) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, long) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, float) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, double) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMeta(String, char) - Method in class loci.formats.FormatReader

Adds an entry to the metadata table for the current series.

addSeriesMetaList(String, Object) - Method in class loci.formats.FormatReader

Add the given key/value pair to the current series metadata hashtable.

addShape(Shape) - Method in class ome.xml.model.Union

addSheetIndexToExternSheet(short) - Method in class loci.poi.hssf.model.Workbook

addSheetReference(String, int) - Method in class loci.poi.hssf.util.SheetReferences

addShortOrLongField(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

addSSTString(UnicodeString) - Method in class loci.poi.hssf.model.Workbook

Adds a string to the SST table and returns its index (if its a duplicate just returns its index and update the counts) ASSUMES compressed unicode (meaning 8bit)

addSSTString(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

Do not call this method from your applications. Use the methods available in the HSSFRow to add string HSSFCells

addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.AbstractShape

Add standard properties to the opt record.

addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.CommentShape

Sets standard escher options for a comment.

addStatusListener(StatusListener) - Method in interface loci.common.StatusReporter

addStatusListener(StatusListener) - Method in class loci.plugins.in.ImagePlusReader

addStatusListener(StatusListener) - Method in class loci.plugins.in.ImportProcess

addString(UnicodeString) - Method in class loci.poi.hssf.record.SSTRecord

Add a string.

addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Add a new string to the string table.

addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Add a new string to the string table.

addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Add a new string to the string table.

addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Add a new string to the string table.

addSubRecord(int, Object) - Method in class loci.poi.hssf.record.ObjRecord

addSubRecord(Object) - Method in class loci.poi.hssf.record.ObjRecord

addTable(Object) - Method in class mdbtools.dbengine.sql.Select

addTagAnnotation(TagAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Adds an element to the group of TIFFTagSets of which this directory is aware.

addTermAnnotation(TermAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addTiffData(TiffData) - Method in class ome.xml.model.Pixels

addTIFFField(TIFFField) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Adds a TIFF field to the directory.

addTimestampAnnotation(TimestampAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addToAll(int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

addToHashtable() - Method in class loci.formats.in.ZeissLSMReader.SubBlock

addToSSTIfRequired() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

addToStringTable(IntMapper, UnicodeString) - Static method in class loci.poi.hssf.record.SSTDeserializer

addUsedFile(String, String) - Method in class loci.formats.in.PerkinElmerReader

Add the given file to the used files list.

addUserCommentMeta(Element, int) - Method in class loci.formats.in.LIFReader

addValueName(int, String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Adds a mnemonic name for a particular value that this tag's data may take on.

addValueRecord(int, CellValueRecordInterface) - Method in class loci.poi.hssf.model.Sheet

Adds a value record to the sheet's contained binary records (i.e.

addWell(Well) - Method in class ome.xml.model.Plate

addWellSample(WellSample) - Method in class ome.xml.model.Well

addXMLAnnotation(XMLAnnotation) - Method in class ome.xml.model.StructuredAnnotations

addXYZPoints(IIOMetadataNode, String, double, double, double) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

adjust - Variable in class loci.formats.in.SlidebookReader

adjustBitDepths - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

adjustEndianness - Variable in class loci.formats.in.GatanReader

adjustForUnits(int, double) - Method in class loci.formats.in.IMODReader

adjustForWhiteBalance(short, int) - Method in class loci.formats.in.DNGReader

adjustForWhiteBalance(short, int) - Method in class loci.formats.in.NikonReader

adjustmentValueChanged(AdjustmentEvent) - Method in class loci.plugins.util.DataBrowser

adjustWellDimensions() - Method in class loci.formats.in.ScanrReader

advanceBlock() - Method in class loci.formats.in.APNGReader.PNGInputStream

AE - Static variable in class loci.formats.in.DicomReader

AffineTransform - Class in ome.xml.model

AffineTransform() - Constructor for class ome.xml.model.AffineTransform

Default constructor.

AffineTransform(Element, OMEModel) - Constructor for class ome.xml.model.AffineTransform

Constructs AffineTransform recursively from an XML DOM tree.

AffineTransform(AffineTransform) - Constructor for class ome.xml.model.AffineTransform

Copy constructor.

AFIReader - Class in loci.formats.in

AFIReader is the file format reader for Aperio AFI files.

AFIReader() - Constructor for class loci.formats.in.AFIReader

Constructs a new AFI reader.

AFIReader.AFIHandler - Class in loci.formats.in

AFIReader.AFIHandler() - Constructor for class loci.formats.in.AFIReader.AFIHandler

afterRecordSerialize(int, short, int, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener

Fired after a record has been serialized.

afterRecordSerialize(int, short, int, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener

ag - Variable in class loci.formats.FileStitcher.ExternalSeries

Aggregate - Interface in mdbtools.dbengine.functions

aggregateDrawingRecords(DrawingManager2) - Method in class loci.poi.hssf.model.Sheet

AggregateMetadata - Class in ome.xml.meta

A metadata store which delegates the actual storage to one or more sub metadata stores.

AggregateMetadata(List<BaseMetadata>) - Constructor for class ome.xml.meta.AggregateMetadata

Creates a new instance.

aggregateQuery(Data) - Method in class mdbtools.dbengine.SelectEngine

execute an aggregate query

AggregateQuery - Class in mdbtools.dbengine.tasks

resolve the columns, num rows not the same

AggregateQuery(Task, Select, int[]) - Constructor for class mdbtools.dbengine.tasks.AggregateQuery

AHZ - Static variable in class ome.units.UNITS

AIMReader - Class in loci.formats.in

AIMReader is the file format reader for .aim files.

AIMReader() - Constructor for class loci.formats.in.AIMReader

Constructs a new AIM reader.

airPressure - Variable in class loci.formats.in.ZeissCZIReader

airPressure - Variable in class ome.xml.model.ImagingEnvironment

AISF - Static variable in class loci.formats.in.VolocityClippingReader

AL3D_MAGIC_STRING - Static variable in class loci.formats.in.AliconaReader

AliconaReader - Class in loci.formats.in

AliconaReader is the file format reader for Alicona AL3D files.

AliconaReader() - Constructor for class loci.formats.in.AliconaReader

Constructs a new Alicona reader.

ALIGN_CENTER - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

center horizontal alignment

ALIGN_CENTER_SELECTION - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

center-selection? horizontal alignment

ALIGN_FILL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

fill? horizontal alignment

ALIGN_GENERAL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

general (normal) horizontal alignment

ALIGN_JUSTIFY - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

justified horizontal alignment

ALIGN_LEFT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

left-justified horizontal alignment

ALIGN_RIGHT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

right-justified horizontal alignment

ALIGNMENT - Static variable in class loci.formats.in.ZeissCZIReader

alignROI - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

By specifying this parameter, the ROI mask will be limited to covering only entire code-blocks.

aLine - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

all_data - Variable in class loci.poi.hssf.record.FormulaRecord

ALL_DOMAINS - Static variable in class loci.formats.FormatTools

List of all supported domains.

ALL_TYPES - Static variable in class loci.formats.gui.GUITools

String to use for "all types" combination filter.

allBlockLengths - Variable in class loci.formats.in.SDTInfo

allBlockOffsets - Variable in class loci.formats.in.SDTInfo

allFiles - Variable in class loci.formats.in.BrukerReader

allFiles - Variable in class loci.formats.in.PerkinElmerReader

List of all files to open

allocate(int...) - Static method in class loci.common.DataTools

Allocates a 1-dimensional byte array matching the product of the given sizes.

allocate(long, int) - Method in class loci.common.NIOByteBufferProvider

Allocates or maps the desired file data into memory.

allocateDirect(long, int) - Method in class loci.common.NIOByteBufferProvider

Allocates memory and copies the desired file data into it.

allocatedSize - Variable in class loci.formats.in.ZeissCZIReader.Segment

allocateMappedByteBuffer(long, int) - Method in class loci.common.NIOByteBufferProvider

Memory maps the desired file data into memory.

allocateRate() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Allocates output bit-rate for each tile in parsing mode: The allocator simulates the truncation of a virtual layer-resolution progressive codestream.

allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager

Allocates new shape id for the new drawing group id.

allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager2

Allocates new shape id for the new drawing group id.

allocateSpace(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Allocate space for a block of indices

allowedTagsByName - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

allowedTagsByNumber - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

allowedTagSets - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

allowOpen - Variable in class loci.formats.gui.FormatFileFilter

Whether it is ok to open a file to determine its type.

allowOpen - Variable in class loci.formats.ImageReader

allowShow - Variable in class loci.plugins.util.DataBrowser

ALPHA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the first lifting step coefficient

ALPHA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the first lifting step coefficient

ALPHABET_LENGTH - Static variable in class loci.formats.ResourceNamer

alphabeticIndexCount(String) - Static method in class loci.formats.ResourceNamer

alphaChannel - Variable in enum ome.jxr.ifd.PixelFormat

alphaImagePlaneFlag - Variable in class ome.jxr.parser.DatastreamParser

alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

ALPHANUM - Static variable in class loci.tests.IOTester

alphaShort - Variable in class loci.formats.gui.Index16ColorModel

Lookup tables.

alreadyChecked() - Method in class loci.formats.UpgradeChecker

Return true if an upgrade check has already been performed in this JVM session.

ALT_BARS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

ALT_BARS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Wide dots

alt_pg_buf - Variable in class mdbtools.libmdb.MdbHandle

ALT_ZVI - Static variable in class loci.common.DateTools

ALT_ZVI_EPOCH - Static variable in class loci.common.DateTools

altCodec - Variable in class loci.formats.in.NativeQTReader

Some movies use two video codecs -- this is the second codec.

ALTERNATE_MD5 - Static variable in class loci.tests.testng.Configuration

alternateCenter - Variable in class loci.formats.in.LeicaHandler

alternateCenter - Variable in class loci.formats.in.LIFReader

alternateexpression - Static variable in class loci.poi.hssf.record.WSBoolRecord

alternateformula - Static variable in class loci.poi.hssf.record.WSBoolRecord

ALTITUDE_REF_SEA_LEVEL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSAltitudeRef" tag.

ALTITUDE_REF_SEA_LEVEL_REFERENCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSAltitudeRef" tag.

altPlanes - Variable in class loci.formats.in.NativeQTReader

Number of frames that use the alternate codec.

alwaysCalc - Variable in class loci.poi.hssf.record.FormulaRecord

AM - Static variable in class ome.units.UNITS

AmiraParameters - Class in loci.formats.tools

AmiraParameters handles parsing and writing of AmiraMesh headers.

AmiraParameters(String) - Constructor for class loci.formats.tools.AmiraParameters

AmiraParameters(RandomAccessInputStream) - Constructor for class loci.formats.tools.AmiraParameters

AmiraReader - Class in loci.formats.in

This is a file format reader for AmiraMesh data.

AmiraReader() - Constructor for class loci.formats.in.AmiraReader

AmiraReader.ASCII - Class in loci.formats.in

This class provides a not-quite-efficient, but simple reader for planes stored in ASCII-encoded numbers.

AmiraReader.ASCII(int, int) - Constructor for class loci.formats.in.AmiraReader.ASCII

AmiraReader.HxRLE - Class in loci.formats.in

This is the reader for RLE-compressed AmiraMeshes.

AmiraReader.HxRLE(int, long) - Constructor for class loci.formats.in.AmiraReader.HxRLE

AmiraReader.HxZip - Class in loci.formats.in

This is the reader for GZip-compressed AmiraMeshes.

AmiraReader.HxZip(long) - Constructor for class loci.formats.in.AmiraReader.HxZip

AmiraReader.PlaneReader - Interface in loci.formats.in

This is the common interface for all formats, compressed or not.

amplificationGain - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

amplificationGain - Variable in class ome.xml.model.Detector

analysisFiles - Variable in class loci.formats.in.MIASReader

analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.

analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

A specific version of the analyze_hpf() method that works on int data.

analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

The general version of the analyze_hpf() method, it just calls the specialized version.

analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

An implementation of the analyze_hpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.

analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

A specific version of the analyze_hpf() method that works on int data.

analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

The general version of the analyze_hpf() method, it just calls the specialized version.

analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

An implementation of the analyze_hpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.

analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.

analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

A specific version of the analyze_lpf() method that works on int data.

analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

The general version of the analyze_lpf() method, it just calls the specialized version.

analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

An implementation of the analyze_lpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.

analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

A specific version of the analyze_lpf() method that works on int data.

analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

The general version of the analyze_lpf() method, it just calls the specialized version.

analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

An implementation of the analyze_lpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.

AnalyzeReader - Class in loci.formats.in

AnalyzeReader is the file format reader for Analyze 7.5 files.

AnalyzeReader() - Constructor for class loci.formats.in.AnalyzeReader

Constructs a new Analyze reader.

anbytes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Actual number of read bytes

anchor - Variable in class loci.poi.hssf.usermodel.HSSFShape

ANCHOR_ID_CHART_TITLE - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_SERIES_OR_POINT - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_X_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_Y_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

ANCHOR_ID_Z_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord

anchorType - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor

and(int) - Method in class loci.plugins.util.RecordedImageProcessor

AND - Static variable in class mdbtools.dbengine.sql.Condition

ANDOR_MAGIC_STRING - Static variable in class loci.formats.in.FluoviewReader

ANDOR_SHIFT_SPEED - Static variable in class loci.formats.in.CellSensReader

andTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

andTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

anGainExp - Variable in class jj2000.j2k.wavelet.Subband

The base 2 exponent of the analysis gain of the subband.

ANGLE - Static variable in class loci.formats.in.ZeissLSMReader

angle - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

Angle - Class in ome.units.quantity

A wrapper for the Angle class from the units implementation.

Angle(Number, Unit<Angle>) - Constructor for class ome.units.quantity.Angle

angles - Variable in class loci.formats.in.ZeissCZIReader

ANGSTROM - Static variable in class ome.units.UNITS

anim - Variable in class loci.formats.gui.ImageViewer

anim - Variable in class loci.plugins.util.DataBrowser

animate - Variable in class loci.plugins.util.DataBrowser

ANIMATION_KEY - Static variable in class loci.formats.gui.ImageViewer

ANN_BOOLEAN_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_COMMENT_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_DOUBLE_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_LONG_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_TAG_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_TERM_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_TIME_VALUE - Static variable in class loci.formats.in.FakeReader

ANN_XML_VALUE_END - Static variable in class loci.formats.in.FakeReader

ANN_XML_VALUE_START - Static variable in class loci.formats.in.FakeReader

Annotation - Class in ome.xml.model

Annotation() - Constructor for class ome.xml.model.Annotation

Default constructor.

Annotation(Element, OMEModel) - Constructor for class ome.xml.model.Annotation

Constructs Annotation recursively from an XML DOM tree.

Annotation(Annotation) - Constructor for class ome.xml.model.Annotation

Copy constructor.

ANNOTATION_NAMESPACE - Static variable in class loci.formats.in.FakeReader

ANNOTATION_PREFIX - Static variable in class loci.formats.in.FakeReader

annotationLinks - Variable in class ome.xml.model.Annotation

annotationLinks - Variable in class ome.xml.model.Channel

annotationLinks - Variable in class ome.xml.model.Dataset

annotationLinks - Variable in class ome.xml.model.Detector

annotationLinks - Variable in class ome.xml.model.Dichroic

annotationLinks - Variable in class ome.xml.model.Experimenter

annotationLinks - Variable in class ome.xml.model.ExperimenterGroup

annotationLinks - Variable in class ome.xml.model.Filter

annotationLinks - Variable in class ome.xml.model.Image

annotationLinks - Variable in class ome.xml.model.Instrument

annotationLinks - Variable in class ome.xml.model.LightPath

annotationLinks - Variable in class ome.xml.model.LightSource

annotationLinks - Variable in class ome.xml.model.Objective

annotationLinks - Variable in class ome.xml.model.Plane

annotationLinks - Variable in class ome.xml.model.Plate

annotationLinks - Variable in class ome.xml.model.PlateAcquisition

annotationLinks - Variable in class ome.xml.model.Project

annotationLinks - Variable in class ome.xml.model.Reagent

annotationLinks - Variable in class ome.xml.model.ROI

annotationLinks - Variable in class ome.xml.model.Screen

annotationLinks - Variable in class ome.xml.model.Shape

annotationLinks - Variable in class ome.xml.model.Well

AnnotationRef - Class in ome.xml.model

AnnotationRef() - Constructor for class ome.xml.model.AnnotationRef

Default constructor.

AnnotationRef(Element, OMEModel) - Constructor for class ome.xml.model.AnnotationRef

Constructs AnnotationRef recursively from an XML DOM tree.

AnnotationRef(AnnotationRef) - Constructor for class ome.xml.model.AnnotationRef

Copy constructor.

ANNOTATIONS - Static variable in class ome.specification.XMLMockObjects

The supported types of annotations.

annotator - Variable in class ome.xml.model.Annotation

ANO_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

ANSI_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont

ANSI character set

AnWTFilter - Class in jj2000.j2k.wavelet.analysis

This abstract class defines the methods of all analysis wavelet filters.

AnWTFilter() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilter

AnWTFilterFloat - Class in jj2000.j2k.wavelet.analysis

This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for float data specifically.

AnWTFilterFloat() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

AnWTFilterFloatLift9x7 - Class in jj2000.j2k.wavelet.analysis

This class inherits from the analysis wavelet filter definition for int data.

AnWTFilterFloatLift9x7() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

AnWTFilterInt - Class in jj2000.j2k.wavelet.analysis

This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for int data specifically.

AnWTFilterInt() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterInt

AnWTFilterIntLift5x3 - Class in jj2000.j2k.wavelet.analysis

This class inherits from the analysis wavelet filter definition for int data.

AnWTFilterIntLift5x3() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

AnWTFilterSpec - Class in jj2000.j2k.wavelet.analysis

This class extends ModuleSpec class for analysis filters specification holding purpose.

AnWTFilterSpec(int, int, byte, QuantTypeSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Constructs a new 'AnWTFilterSpec' for the specified number of components and tiles.

APA - Static variable in class ome.units.UNITS

APERIO_IMAGE_DESCRIPTION_PREFIX - Static variable in class loci.formats.in.SVSReader

TIFF image description prefix for Aperio SVS files.

APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD

APLReader - Class in loci.formats.in

APLReader is the file format reader for Olympus APL files.

APLReader() - Constructor for class loci.formats.in.APLReader

Constructs a new APL reader.

APNGReader - Class in loci.formats.in

APNGReader is the file format reader for Animated Portable Network Graphics (APNG) images.

APNGReader() - Constructor for class loci.formats.in.APNGReader

Constructs a new APNGReader.

APNGReader.PNGBlock - Class in loci.formats.in

APNGReader.PNGBlock() - Constructor for class loci.formats.in.APNGReader.PNGBlock

APNGReader.PNGInputStream - Class in loci.formats.in

InputStream implementation that stitches together IDAT blocks into a seamless zlib stream.

APNGReader.PNGInputStream(String) - Constructor for class loci.formats.in.APNGReader.PNGInputStream

APNGReader.PNGInputStream(String, int) - Constructor for class loci.formats.in.APNGReader.PNGInputStream

APNGWriter - Class in loci.formats.out

APNGWriter is the file format writer for PNG and APNG files.

APNGWriter() - Constructor for class loci.formats.out.APNGWriter

append(ILoggingEvent) - Method in class loci.plugins.util.IJStatusEchoer

appendChild(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

appendedCompressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

appendServerMap(String, String) - Static method in class loci.formats.in.FlexReader

Add the path 'realName' to the mapping for the server named 'alias'.

applicationData - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

applicationIDs - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

applyCalibration(ImagePlus) - Method in class loci.plugins.in.Calibrator

Applies spatial calibrations to an image stack.

applyColors(List<ImagePlus>) - Method in class loci.plugins.in.Colorizer

applyColors(List<ImagePlus>) - Method in class loci.plugins.in.ImagePlusReader

applyDisplayRanges(ImagePlus, int) - Method in class loci.plugins.in.Colorizer

applyFont(int, int, short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Applies a font to the specified characters of a string.

applyFont(int, int, HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Applies a font to the specified characters of a string.

applyFont(HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Sets the font of the entire string.

applyFont(short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Applies the specified font to the entire string.

applyMethodStack(List<RecordedImageProcessor.MethodEntry>) - Method in class loci.plugins.util.RecordedImageProcessor

applystyles - Static variable in class loci.poi.hssf.record.WSBoolRecord

applyTable(int[]) - Method in class loci.plugins.util.RecordedImageProcessor

approximation - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

arabic - Variable in class loci.poi.hssf.record.WindowTwoRecord

arate - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Actual decoding rate in bpp

ArbROIMaskGenerator - Class in jj2000.j2k.roi.encoder

This class generates the ROI bit-mask when, at least, one ROI is not rectangular.

ArbROIMaskGenerator(ROI[], int, Quantizer) - Constructor for class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

The constructor of the arbitrary mask generator

arbShape - Variable in class jj2000.j2k.roi.encoder.ROI

Where or not the ROI shape is arbitrary

Arc - Class in ome.xml.model

Arc() - Constructor for class ome.xml.model.Arc

Default constructor.

Arc(Element, OMEModel) - Constructor for class ome.xml.model.Arc

Constructs Arc recursively from an XML DOM tree.

Arc(Arc) - Constructor for class ome.xml.model.Arc

Copy constructor.

ARC_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of an arc.

ARCHIVE - Static variable in class loci.formats.in.FlexReader

ArcType - Enum in ome.xml.model.enums

ArcType(String) - Constructor for enum ome.xml.model.enums.ArcType

ArcTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ArcType.

ArcTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ArcTypeEnumHandler

Area3DPtg - Class in loci.poi.hssf.record.formula

Title: Area 3D Ptg - 3D referecnce (Sheet + Area)

Area3DPtg() - Constructor for class loci.poi.hssf.record.formula.Area3DPtg

Creates new AreaPtg

Area3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg

Area3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg

AreaAPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaAPtg

AreaAPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg

AreaAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg

AreaErrPtg - Class in loci.poi.hssf.record.formula

AreaErr - handles deleted cell area references.

AreaErrPtg() - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg

AreaErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg

AreaFormatRecord - Class in loci.poi.hssf.record

The area format record is used to define the colours and patterns for an area.

AreaFormatRecord() - Constructor for class loci.poi.hssf.record.AreaFormatRecord

AreaFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaFormatRecord

Constructs a AreaFormat record and sets its fields appropriately.

AreaNAPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaNAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg

AreaNAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg

AreaNPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaNPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNPtg

AreaNPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNPtg

AreaNVPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaNVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg

AreaNVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg

AreaPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaPtg() - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaPtg(String) - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaPtg

AreaRecord - Class in loci.poi.hssf.record

The area record is used to define a area chart.

AreaRecord() - Constructor for class loci.poi.hssf.record.AreaRecord

AreaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaRecord

Constructs a Area record and sets its fields appropriately.

AreaReference - Class in loci.poi.hssf.util

AreaReference(String) - Constructor for class loci.poi.hssf.util.AreaReference

Create an area ref from a string representation

areas - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

AreaVPtg - Class in loci.poi.hssf.record.formula

Specifies a rectangular area of cells A1:A4 for instance.

AreaVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaVPtg

AreaVPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg

AreaVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg

areIntArraysEqual(int[], int[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

areSampleSizesEqual(SampleModel) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Returns whether all samples have the same number of bits.

ARFReader - Class in loci.formats.in

ARFReader is the file format reader for Axon Raw Format (ARF) files, produced by INDEC BioSystems's Imaging Workbench software.

ARFReader() - Constructor for class loci.formats.in.ARFReader

Constructs a new ARF reader.

arg - Variable in class loci.plugins.LociExporter

Argument passed to setup method.

arg - Variable in class loci.plugins.Slicer

Plugin options.

args - Static variable in class loci.plugins.shortcut.ShortcutPanel

Details for installed plugins.

args - Variable in class loci.plugins.util.RecordedImageProcessor.MethodEntry

argument - Variable in class mdbtools.dbengine.sql.FunctionDef

Arguments() - Method in class loci.poi.hssf.model.FormulaParser

get arguments to a function

ARRAY - Static variable in class loci.formats.in.GatanReader

Data types.

array_to_string(int[], int) - Static method in class mdbtools.libmdb.Money

arraycopy(byte[], int, byte[], int, int) - Static method in class loci.poi.util.ArrayUtil

This is really a debugging version of System.arraycopy().

arrayMoveWithin(Object[], int, int, int) - Static method in class loci.poi.util.ArrayUtil

Moves a number of entries in an array to another point in the array, shifting those inbetween as required.

ArrayPtg - Class in loci.poi.hssf.record.formula

ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.

ArrayPtg() - Constructor for class loci.poi.hssf.record.formula.ArrayPtg

ArrayPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtg

ArrayPtgA - Class in loci.poi.hssf.record.formula

ArrayPtgA - handles arrays

ArrayPtgA() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA

ArrayPtgA(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA

ArrayPtgV - Class in loci.poi.hssf.record.formula

ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.

ArrayPtgV() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV

ArrayPtgV(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV

arrayToString(Array) - Method in class loci.formats.services.NetCDFServiceImpl

ArrayUtil - Class in jj2000.j2k.util

This class contains a colleaction of utility static methods for arrays.

ArrayUtil() - Constructor for class jj2000.j2k.util.ArrayUtil

ArrayUtil - Class in loci.poi.util

Utility classes for dealing with arrays.

ArrayUtil() - Constructor for class loci.poi.util.ArrayUtil

ARROW - Static variable in class loci.formats.in.FV1000Reader

ARROW - Static variable in class loci.formats.in.LeicaHandler.ROI

ARROW - Static variable in class loci.formats.in.LIFReader.ROI

ARTIST - Static variable in class loci.formats.tiff.IFD

AS - Static variable in class loci.formats.in.DicomReader

AS - Static variable in class ome.units.UNITS

ascending - Variable in class mdbtools.dbengine.sql.OrderBy

ascii - Variable in class loci.formats.in.AmiraReader

ascii - Variable in class loci.formats.tools.AmiraParameters

AsciiImage - Class in loci.formats.tools

A utility class for outputting a BufferedImage as ASCII text.

AsciiImage(BufferedImage) - Constructor for class loci.formats.tools.AsciiImage

asDateTime(DateTimeZone) - Method in class ome.xml.model.primitives.Timestamp

Returns the timestamp as a Joda DateTime type.

asInstant() - Method in class ome.xml.model.primitives.Timestamp

Returns the timestamp as a Joda DateTime type.

asMap() - Method in class loci.formats.in.DeltavisionReader.DVExtHdrFields

asRetrieve(MetadataStore) - Method in interface loci.formats.services.OMEXMLService

Gets the given MetadataStore object as a MetadataRetrieve.

asRetrieve(MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl

assertBlock(int, int, int, int, int) - Method in class loci.tests.testng.OpenBytesPerformanceTest

assertCompression(TiffCompression, boolean) - Method in class loci.tests.testng.CompressDecompressTest

Tests the writing of the tiles.

assertId(String, boolean, int) - Static method in class loci.formats.FormatTools

Asserts that the current file is either null, or not, according to the given flag.

assertRows(int) - Method in class loci.tests.testng.OpenBytesPerformanceTest

assertSeries(int) - Method in class loci.tests.testng.OpenBytesPerformanceTest

assertStep(ImportStep) - Method in class loci.plugins.in.ImportProcess

assertTiles(String, String, int, int, boolean) - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of the tiles.

assertUnevenTiles(String, String, int, int, boolean) - Method in class loci.tests.testng.TiffWriterTest

Tests the writing of the tiles.

assignL2Norm(float) - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Assigns the given L2-norm to the first leaf that does not have an L2-norm value yet (i.e.

assignPlaneIndices() - Method in class loci.formats.in.ZeissCZIReader

assignValues(double[]) - Method in class loci.formats.in.TextReader

Assigns values from the given row into the data array.

associations - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

associations - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

assoicateShapeToObjRecord(EscherRecord, Record) - Method in class loci.poi.hssf.record.EscherAggregate

Associates an escher record to an OBJ record or a TXO record.

asStore(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Gets the given MetadataRetrieve object as a MetadataStore.

asStore(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl

ASTRONOMY_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the astronomy domain.

asXMLElement(Document) - Method in class ome.xml.model.AbstractOMEModelObject

asXMLElement(Document, Element) - Method in class ome.xml.model.AbstractOMEModelObject

Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.

asXMLElement(Document) - Method in class ome.xml.model.AffineTransform

asXMLElement(Document, Element) - Method in class ome.xml.model.AffineTransform

asXMLElement(Document) - Method in class ome.xml.model.Annotation

asXMLElement(Document, Element) - Method in class ome.xml.model.Annotation

asXMLElement(Document) - Method in class ome.xml.model.AnnotationRef

asXMLElement(Document, Element) - Method in class ome.xml.model.AnnotationRef

asXMLElement(Document) - Method in class ome.xml.model.Arc

asXMLElement(Document, Element) - Method in class ome.xml.model.Arc

asXMLElement(Document) - Method in class ome.xml.model.BasicAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.BasicAnnotation

asXMLElement(Document) - Method in class ome.xml.model.BinaryFile

asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryFile

asXMLElement(Document) - Method in class ome.xml.model.BinaryOnly

asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryOnly

asXMLElement(Document) - Method in class ome.xml.model.BinData

asXMLElement(Document, Element) - Method in class ome.xml.model.BinData

asXMLElement(Document) - Method in class ome.xml.model.BooleanAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.BooleanAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Channel

asXMLElement(Document, Element) - Method in class ome.xml.model.Channel

asXMLElement(Document) - Method in class ome.xml.model.ChannelRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ChannelRef

asXMLElement(Document) - Method in class ome.xml.model.CommentAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.CommentAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Dataset

asXMLElement(Document, Element) - Method in class ome.xml.model.Dataset

asXMLElement(Document) - Method in class ome.xml.model.DatasetRef

asXMLElement(Document, Element) - Method in class ome.xml.model.DatasetRef

asXMLElement(Document) - Method in class ome.xml.model.Detector

asXMLElement(Document, Element) - Method in class ome.xml.model.Detector

asXMLElement(Document) - Method in class ome.xml.model.DetectorSettings

asXMLElement(Document, Element) - Method in class ome.xml.model.DetectorSettings

asXMLElement(Document) - Method in class ome.xml.model.Dichroic

asXMLElement(Document, Element) - Method in class ome.xml.model.Dichroic

asXMLElement(Document) - Method in class ome.xml.model.DichroicRef

asXMLElement(Document, Element) - Method in class ome.xml.model.DichroicRef

asXMLElement(Document) - Method in class ome.xml.model.DoubleAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.DoubleAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Ellipse

asXMLElement(Document, Element) - Method in class ome.xml.model.Ellipse

asXMLElement(Document) - Method in class ome.xml.model.EmissionFilterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.EmissionFilterRef

asXMLElement(Document) - Method in class ome.xml.model.ExcitationFilterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExcitationFilterRef

asXMLElement(Document) - Method in class ome.xml.model.Experiment

asXMLElement(Document, Element) - Method in class ome.xml.model.Experiment

asXMLElement(Document) - Method in class ome.xml.model.Experimenter

asXMLElement(Document, Element) - Method in class ome.xml.model.Experimenter

asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroup

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroup

asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroupRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroupRef

asXMLElement(Document) - Method in class ome.xml.model.ExperimenterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterRef

asXMLElement(Document) - Method in class ome.xml.model.ExperimentRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimentRef

asXMLElement(Document) - Method in class ome.xml.model.External

asXMLElement(Document, Element) - Method in class ome.xml.model.External

asXMLElement(Document) - Method in class ome.xml.model.Filament

asXMLElement(Document, Element) - Method in class ome.xml.model.Filament

asXMLElement(Document) - Method in class ome.xml.model.FileAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.FileAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Filter

asXMLElement(Document, Element) - Method in class ome.xml.model.Filter

asXMLElement(Document) - Method in class ome.xml.model.FilterRef

asXMLElement(Document, Element) - Method in class ome.xml.model.FilterRef

asXMLElement(Document) - Method in class ome.xml.model.FilterSet

asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSet

asXMLElement(Document) - Method in class ome.xml.model.FilterSetRef

asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSetRef

asXMLElement(Document) - Method in class ome.xml.model.GenericExcitationSource

asXMLElement(Document, Element) - Method in class ome.xml.model.GenericExcitationSource

asXMLElement(Document) - Method in class ome.xml.model.Image

asXMLElement(Document, Element) - Method in class ome.xml.model.Image

asXMLElement(Document) - Method in class ome.xml.model.ImageRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ImageRef

asXMLElement(Document) - Method in class ome.xml.model.ImagingEnvironment

asXMLElement(Document, Element) - Method in class ome.xml.model.ImagingEnvironment

asXMLElement(Document) - Method in class ome.xml.model.Instrument

asXMLElement(Document, Element) - Method in class ome.xml.model.Instrument

asXMLElement(Document) - Method in class ome.xml.model.InstrumentRef

asXMLElement(Document, Element) - Method in class ome.xml.model.InstrumentRef

asXMLElement(Document) - Method in class ome.xml.model.Label

asXMLElement(Document, Element) - Method in class ome.xml.model.Label

asXMLElement(Document) - Method in class ome.xml.model.Laser

asXMLElement(Document, Element) - Method in class ome.xml.model.Laser

asXMLElement(Document) - Method in class ome.xml.model.Leader

asXMLElement(Document, Element) - Method in class ome.xml.model.Leader

asXMLElement(Document) - Method in class ome.xml.model.LightEmittingDiode

asXMLElement(Document, Element) - Method in class ome.xml.model.LightEmittingDiode

asXMLElement(Document) - Method in class ome.xml.model.LightPath

asXMLElement(Document, Element) - Method in class ome.xml.model.LightPath

asXMLElement(Document, Element) - Method in class ome.xml.model.LightSource

asXMLElement(Document) - Method in class ome.xml.model.LightSourceSettings

asXMLElement(Document, Element) - Method in class ome.xml.model.LightSourceSettings

asXMLElement(Document) - Method in class ome.xml.model.Line

asXMLElement(Document, Element) - Method in class ome.xml.model.Line

asXMLElement(Document) - Method in class ome.xml.model.ListAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.ListAnnotation

asXMLElement(Document) - Method in class ome.xml.model.LongAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.LongAnnotation

asXMLElement(Document) - Method in class ome.xml.model.ManufacturerSpec

asXMLElement(Document, Element) - Method in class ome.xml.model.ManufacturerSpec

asXMLElement(Document) - Method in class ome.xml.model.Map

asXMLElement(Document, Element) - Method in class ome.xml.model.Map

asXMLElement(Document) - Method in class ome.xml.model.MapAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.MapAnnotation

asXMLElement(Document) - Method in class ome.xml.model.MapPairs

asXMLElement(Document, Element) - Method in class ome.xml.model.MapPairs

asXMLElement(Document) - Method in class ome.xml.model.Mask

asXMLElement(Document, Element) - Method in class ome.xml.model.Mask

asXMLElement(Document) - Method in class ome.xml.model.MetadataOnly

asXMLElement(Document, Element) - Method in class ome.xml.model.MetadataOnly

asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulation

asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulation

asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulationRef

asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulationRef

asXMLElement(Document) - Method in class ome.xml.model.Microscope

asXMLElement(Document, Element) - Method in class ome.xml.model.Microscope

asXMLElement(Document) - Method in class ome.xml.model.NumericAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.NumericAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Objective

asXMLElement(Document, Element) - Method in class ome.xml.model.Objective

asXMLElement(Document) - Method in class ome.xml.model.ObjectiveSettings

asXMLElement(Document, Element) - Method in class ome.xml.model.ObjectiveSettings

asXMLElement(Document) - Method in class ome.xml.model.OME

asXMLElement(Document, Element) - Method in class ome.xml.model.OME

asXMLElement(Document) - Method in interface ome.xml.model.OMEModelObject

Takes the entire object hierarchy and produces an XML DOM tree.

asXMLElement(Document) - Method in class ome.xml.model.Pixels

asXMLElement(Document, Element) - Method in class ome.xml.model.Pixels

asXMLElement(Document) - Method in class ome.xml.model.Plane

asXMLElement(Document, Element) - Method in class ome.xml.model.Plane

asXMLElement(Document) - Method in class ome.xml.model.Plate

asXMLElement(Document, Element) - Method in class ome.xml.model.Plate

asXMLElement(Document) - Method in class ome.xml.model.PlateAcquisition

asXMLElement(Document, Element) - Method in class ome.xml.model.PlateAcquisition

asXMLElement(Document) - Method in class ome.xml.model.PlateRef

asXMLElement(Document, Element) - Method in class ome.xml.model.PlateRef

asXMLElement(Document) - Method in class ome.xml.model.Point

asXMLElement(Document, Element) - Method in class ome.xml.model.Point

asXMLElement(Document) - Method in class ome.xml.model.Polygon

asXMLElement(Document, Element) - Method in class ome.xml.model.Polygon

asXMLElement(Document) - Method in class ome.xml.model.Polyline

asXMLElement(Document, Element) - Method in class ome.xml.model.Polyline

asXMLElement(Document) - Method in class ome.xml.model.Project

asXMLElement(Document, Element) - Method in class ome.xml.model.Project

asXMLElement(Document) - Method in class ome.xml.model.ProjectRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ProjectRef

asXMLElement(Document) - Method in class ome.xml.model.Pump

asXMLElement(Document, Element) - Method in class ome.xml.model.Pump

asXMLElement(Document) - Method in class ome.xml.model.Reagent

asXMLElement(Document, Element) - Method in class ome.xml.model.Reagent

asXMLElement(Document) - Method in class ome.xml.model.ReagentRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ReagentRef

asXMLElement(Document) - Method in class ome.xml.model.Rectangle

asXMLElement(Document, Element) - Method in class ome.xml.model.Rectangle

asXMLElement(Document) - Method in class ome.xml.model.Reference

asXMLElement(Document, Element) - Method in class ome.xml.model.Reference

asXMLElement(Document) - Method in class ome.xml.model.Rights

asXMLElement(Document, Element) - Method in class ome.xml.model.Rights

asXMLElement(Document) - Method in class ome.xml.model.ROI

asXMLElement(Document, Element) - Method in class ome.xml.model.ROI

asXMLElement(Document) - Method in class ome.xml.model.ROIRef

asXMLElement(Document, Element) - Method in class ome.xml.model.ROIRef

asXMLElement(Document) - Method in class ome.xml.model.Screen

asXMLElement(Document, Element) - Method in class ome.xml.model.Screen

asXMLElement(Document) - Method in class ome.xml.model.Settings

asXMLElement(Document, Element) - Method in class ome.xml.model.Settings

asXMLElement(Document, Element) - Method in class ome.xml.model.Shape

asXMLElement(Document) - Method in class ome.xml.model.StageLabel

asXMLElement(Document, Element) - Method in class ome.xml.model.StageLabel

asXMLElement(Document) - Method in class ome.xml.model.StructuredAnnotations

asXMLElement(Document, Element) - Method in class ome.xml.model.StructuredAnnotations

asXMLElement(Document) - Method in class ome.xml.model.TagAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TagAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TermAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TermAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TextAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TextAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TiffData

asXMLElement(Document, Element) - Method in class ome.xml.model.TiffData

asXMLElement(Document) - Method in class ome.xml.model.TimestampAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TimestampAnnotation

asXMLElement(Document) - Method in class ome.xml.model.TransmittanceRange

asXMLElement(Document, Element) - Method in class ome.xml.model.TransmittanceRange

asXMLElement(Document) - Method in class ome.xml.model.TypeAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.TypeAnnotation

asXMLElement(Document) - Method in class ome.xml.model.Union

asXMLElement(Document, Element) - Method in class ome.xml.model.Union

asXMLElement(Document) - Method in class ome.xml.model.UUID

asXMLElement(Document, Element) - Method in class ome.xml.model.UUID

asXMLElement(Document) - Method in class ome.xml.model.Well

asXMLElement(Document, Element) - Method in class ome.xml.model.Well

asXMLElement(Document) - Method in class ome.xml.model.WellSample

asXMLElement(Document, Element) - Method in class ome.xml.model.WellSample

asXMLElement(Document) - Method in class ome.xml.model.WellSampleRef

asXMLElement(Document, Element) - Method in class ome.xml.model.WellSampleRef

asXMLElement(Document) - Method in class ome.xml.model.XMLAnnotation

asXMLElement(Document, Element) - Method in class ome.xml.model.XMLAnnotation

AT - Static variable in class loci.formats.in.DicomReader

atEOD() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

aTile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The raster for a destination tile

ATM - Static variable in class ome.units.UNITS

attachCompanionFiles() - Method in class loci.formats.in.DicomReader

DICOM datasets produced by: http://www.ct-imaging.de/index.php/en/ct-systeme-e/mikro-ct-e.html contain a bunch of extra metadata and log files.

attachListeners(List<TextField>, List<Panel>) - Method in class loci.plugins.in.ColorDialog

attachment - Variable in class loci.formats.in.ZeissCZIReader.Attachment

attachment - Variable in class loci.formats.in.ZeissCZIReader.Metadata

attachmentData - Variable in class loci.formats.in.ZeissCZIReader.Attachment

attachmentDirectoryPosition - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

attachmentSize - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

attenuation - Variable in class loci.formats.in.ZeissLSMReader.IlluminationChannel

attenuation - Variable in class ome.xml.model.LightSourceSettings

ATTO(Unit<T>) - Static method in class ome.units.UNITS

attr(Element, String) - Method in class loci.formats.in.PrairieMetadata

Gets the attribute value with the given name, or null if not defined.

ATTR_NAME - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

ATTR_NAME_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer

ATTR_NAME_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer

ATTR_VALUE_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer

ATTR_VALUE_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer

attributeList - Variable in class loci.formats.services.NetCDFServiceImpl

attributeNames - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

attrInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

AttrPtg - Class in loci.poi.hssf.record.formula

"Special Attributes" This seems to be a Misc Stuff and Junk record.

AttrPtg() - Constructor for class loci.poi.hssf.record.formula.AttrPtg

AttrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AttrPtg

authenticationCodes - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

author - Variable in class loci.poi.hssf.usermodel.HSSFComment

auto - Variable in class loci.poi.hssf.record.LineFormatRecord

autoBackground - Variable in class loci.poi.hssf.record.TextRecord

autobreaks - Static variable in class loci.poi.hssf.record.WSBoolRecord

autoColor - Variable in class loci.poi.hssf.record.TextRecord

autoContinue - Variable in class loci.poi.hssf.record.RecordInputStream

AUTOEXPOSURE - Static variable in class loci.formats.in.CellSensReader

autofill - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

autoGeneratedText - Variable in class loci.poi.hssf.record.TextRecord

autoLabelDeleted - Variable in class loci.poi.hssf.record.TextRecord

autoline - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

automatic - Variable in class loci.poi.hssf.record.AreaFormatRecord

AUTOMATIC - Static variable in class loci.poi.hssf.record.CalcModeRecord

automatically calculate formulas (1)

AUTOMATIC_EXCEPT_TABLES - Static variable in class loci.poi.hssf.record.CalcModeRecord

automatically calculate formulas except for tables (-1)

automaticCategoryCrossing - Variable in class loci.poi.hssf.record.ValueRangeRecord

automaticMajor - Variable in class loci.poi.hssf.record.ValueRangeRecord

automaticMaximum - Variable in class loci.poi.hssf.record.ValueRangeRecord

automaticMinimum - Variable in class loci.poi.hssf.record.ValueRangeRecord

automaticMinor - Variable in class loci.poi.hssf.record.ValueRangeRecord

autoPlotArea - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

autoPosition - Variable in class loci.poi.hssf.record.FrameRecord

autoPosition - Variable in class loci.poi.hssf.record.LegendRecord

autorotate - Variable in class loci.poi.hssf.record.TickRecord

autoscale(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Perform autoscaling on the given BufferedImage.

autoscale(BufferedImage, int, int) - Static method in class loci.formats.gui.AWTImageTools

Perform autoscaling on the given BufferedImage; map min to 0 and max to 255.

autoscale(byte[], int, int, int, boolean) - Static method in class loci.formats.ImageTools

Perform autoscaling on the given byte array; map min to 0 and max to 255.

autoscaleBox - Variable in class loci.plugins.in.MainDialog

autoSeries - Variable in class loci.poi.hssf.record.LegendRecord

autoSize - Variable in class loci.poi.hssf.record.FrameRecord

autoSizeColumn(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Adjusts the column width to fit the contents.

autoTextBackground - Variable in class loci.poi.hssf.record.TickRecord

autoTextColor - Variable in class loci.poi.hssf.record.TickRecord

autoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

autoUpdate - Variable in class loci.formats.cache.Cache

Whether the cache should automatically update when a parameter changes.

autoXPositioning - Variable in class loci.poi.hssf.record.LegendRecord

autoYPositioning - Variable in class loci.poi.hssf.record.LegendRecord

AV - Static variable in class ome.units.UNITS

available() - Method in class loci.common.NIOInputStream

available() - Method in class loci.common.RandomAccessInputStream

available() - Method in class loci.formats.in.APNGReader.PNGInputStream

available() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Returns the number of bytes that can be read (or skipped over) from this input stream without blocking by the next caller of a method for this input stream.

available() - Method in class loci.poi.util.BlockingInputStream

availMem - Variable in class loci.plugins.in.MemoryDialog

Remaining memory for the JVM.

avbits - Variable in class jj2000.j2k.codestream.writer.BitOutputBuffer

The number of available bits in the current byte

AVERAGE - Static variable in class loci.formats.in.APNGReader

AVERAGING - Static variable in class loci.formats.in.CellSensReader

AVI_MAGIC_STRING - Static variable in class loci.formats.in.AVIReader

AVIReader - Class in loci.formats.in

AVIReader is the file format reader for AVI files.

AVIReader() - Constructor for class loci.formats.in.AVIReader

Constructs a new AVI reader.

AVIWriter - Class in loci.formats.out

AVIWriter is the file format writer for AVI files.

AVIWriter() - Constructor for class loci.formats.out.AVIWriter

avoidUndeclaredNamespaces(String) - Static method in class loci.common.xml.XMLTools

Replaces NS:tag with NS_tag for undeclared namespaces

AW - Static variable in class ome.units.UNITS

AWTImageTools - Class in loci.formats.gui

A utility class with convenience methods for manipulating images in BufferedImage form.

AWTImageTools() - Constructor for class loci.formats.gui.AWTImageTools

ax - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The horizontal coordinate of the image origin in the canvas system, on the reference grid.

axis - Variable in class loci.formats.gui.CacheIndicator

AXIS_TYPE_AXIS_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AXIS_TYPE_CATEGORY_OR_X_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord

AXIS_TYPE_MAIN - Static variable in class loci.poi.hssf.record.AxisParentRecord

AXIS_TYPE_MAJOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AXIS_TYPE_MINOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AXIS_TYPE_SECONDARY - Static variable in class loci.poi.hssf.record.AxisParentRecord

AXIS_TYPE_SERIES_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord

AXIS_TYPE_VALUE_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord

AXIS_TYPE_WALLS_OR_FLOOR - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord

AxisGuesser - Class in loci.formats

AxisGuesser guesses which blocks in a file pattern correspond to which dimensional axes (Z, T or C), potentially recommending an adjustment in dimension order within the files, depending on the confidence of each guess.

AxisGuesser(FilePattern, String, int, int, int, boolean) - Constructor for class loci.formats.AxisGuesser

Guesses dimensional axis assignments corresponding to the given file pattern, using the specified dimensional information from within each file as a guide.

AxisLineFormatRecord - Class in loci.poi.hssf.record

The axis line format record defines the axis type details.

AxisLineFormatRecord() - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord

AxisLineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord

Constructs a AxisLineFormat record and sets its fields appropriately.

AxisOptionsRecord - Class in loci.poi.hssf.record

The axis options record provides unit information and other various tidbits about the axis.

AxisOptionsRecord() - Constructor for class loci.poi.hssf.record.AxisOptionsRecord

AxisOptionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisOptionsRecord

Constructs a AxisOptions record and sets its fields appropriately.

AxisParentRecord - Class in loci.poi.hssf.record

The axis size and location NOTE: This source is automatically generated please do not modify this file.

AxisParentRecord() - Constructor for class loci.poi.hssf.record.AxisParentRecord

AxisParentRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisParentRecord

Constructs a AxisParent record and sets its fields appropriately.

AxisRecord - Class in loci.poi.hssf.record

The axis record defines the type of an axis.

AxisRecord() - Constructor for class loci.poi.hssf.record.AxisRecord

AxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisRecord

Constructs a Axis record and sets its fields appropriately.

axisTypes - Variable in class loci.formats.AxisGuesser

Guessed axis types.

AxisUsedRecord - Class in loci.poi.hssf.record

The number of axes used on a chart.

AxisUsedRecord() - Constructor for class loci.poi.hssf.record.AxisUsedRecord

AxisUsedRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisUsedRecord

Constructs a AxisUsed record and sets its fields appropriately.

ay - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The vertical coordinate of the image origin in the canvas system, on the reference grid.

B

b - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The last byte read

b - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The last encoded byte of data

b(String) - Method in class loci.formats.in.PrairieMetadata

Converts the given string to a boolean.

ba - Variable in class mdbtools.libmdb.Holder

BACK_MASK - Static variable in class loci.common.RandomAccessInputStream

Various bitmasks for the 0000xxxx side of a byte.

BACK_MASK - Static variable in class loci.formats.codec.BitBuffer

Deprecated.

Various bitmasks for the 0000xxxx side of a byte.

backend - Class in mdbtools.libmdb

backend() - Constructor for class mdbtools.libmdb.backend

backend_name - Variable in class mdbtools.libmdb.MdbFile

backend_name - Variable in class mdbtools.libmdb.MdbHandle

background - Variable in class loci.poi.hssf.usermodel.EscherGraphics

BACKGROUND_TABLE - Static variable in class loci.formats.in.LiFlimReader

backgroundC - Variable in class loci.formats.in.LiFlimReader

backgroundColor - Variable in class loci.formats.in.CellSensReader

backgroundColorIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

backgroundDatatype - Variable in class loci.formats.in.LiFlimReader

backgroundF - Variable in class loci.formats.in.LiFlimReader

backgroundP - Variable in class loci.formats.in.LiFlimReader

backgroundT - Variable in class loci.formats.in.LiFlimReader

backgroundX - Variable in class loci.formats.in.LiFlimReader

backgroundY - Variable in class loci.formats.in.LiFlimReader

backgroundZ - Variable in class loci.formats.in.LiFlimReader

backingBuffer - Variable in class loci.tests.testng.ConversionTest.Plane

backingSet - Variable in class ome.xml.model.ReferenceList

backupHandler - Variable in class loci.formats.in.NativeND2Reader

backuppos - Variable in class loci.poi.hssf.model.WorkbookRecordList

BackupRecord - Class in loci.poi.hssf.record

Title: Backup Record

BackupRecord() - Constructor for class loci.poi.hssf.record.BackupRecord

BackupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BackupRecord

Constructs a BackupRecord and sets its fields appropriately

BACKWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy

backwardsStage - Variable in class loci.formats.in.DeltavisionReader

Whether or not the stage moved backwards.

BAD_DATE - Static variable in class loci.poi.hssf.usermodel.HSSFDateUtil

badFontHeight - Static variable in class loci.poi.hssf.record.RowRecord

bais - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader

The byte array that is the source of data if the PktHeaderBitReader is instantiated with a buffer instead of a RandomAccessIO

bak_lblock - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The saved base number of bits for sending code-block length information.

bak_prevtIdxs - Variable in class jj2000.j2k.codestream.writer.PktEncoder

The saved last encoded truncation point for each code-block.

baknBytes - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Backup of the number of bytes allocated to each tile.

bandOffsets - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

bandsPresent - Variable in class ome.jxr.parser.DatastreamParser

bandStride - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

The strides for pixel, band, and scanline.

bankData - Variable in class loci.formats.gui.SignedByteBuffer

bankData - Variable in class loci.formats.gui.UnsignedIntBuffer

baos - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

baos - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The ByteArrayOutputStream to store header data.

BAR - Static variable in class ome.units.UNITS

barcode - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection

barr - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Buffer for the 3 components of each pixel(in the current block)

BarRecord - Class in loci.poi.hssf.record

The bar record is used to define a bar chart.

BarRecord() - Constructor for class loci.poi.hssf.record.BarRecord

BarRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BarRecord

Constructs a Bar record and sets its fields appropriately.

barrierFilter - Variable in class loci.formats.in.FV1000Reader.ChannelData

base - Variable in class loci.common.CBZip2InputStream.Data

base - Variable in class loci.formats.ClassList

Base class to which all classes are assignable.

base64Alphabet - Static variable in class loci.formats.codec.Base64Codec

Base64Codec - Class in loci.formats.codec

Implements encoding (compress) and decoding (decompress) methods for Base64.

Base64Codec() - Constructor for class loci.formats.codec.Base64Codec

BASE_BLOCK_SIZE - Static variable in class loci.common.CBZip2InputStream

BASE_OFFSET - Static variable in class loci.formats.in.BioRadGelReader

BaseCodec - Class in loci.formats.codec

BaseCodec contains default implementation and testing for classes implementing the Codec interface, and acts as a base class for any of the compression classes.

BaseCodec() - Constructor for class loci.formats.codec.BaseCodec

baseConfigName - Static variable in class loci.tests.testng.TestTools

basedir - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo

BaseHandler - Class in loci.common.xml

Top-level SAX handler.

BaseHandler() - Constructor for class loci.common.xml.BaseHandler

BASELINE_CLAMP - Static variable in class loci.formats.in.FluoviewReader

BASELINE_OFFSET - Static variable in class loci.formats.in.FluoviewReader

BASELINE_OFFSET_CLAMP - Static variable in class loci.formats.in.CellSensReader

BaselineTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the set of tags found in the baseline TIFF specification as well as some common additional tags.

BaselineTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

BaselineTIFFTagSet.Artist - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Artist() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Artist

BaselineTIFFTagSet.BitsPerSample - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.BitsPerSample() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.BitsPerSample

BaselineTIFFTagSet.CellLength - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.CellLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.CellLength

BaselineTIFFTagSet.CellWidth - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.CellWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.CellWidth

BaselineTIFFTagSet.ColorMap - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ColorMap() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ColorMap

BaselineTIFFTagSet.Compression - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Compression() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Compression

BaselineTIFFTagSet.Copyright - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Copyright() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Copyright

BaselineTIFFTagSet.DateTime - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.DateTime() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.DateTime

BaselineTIFFTagSet.DocumentName - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.DocumentName() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.DocumentName

BaselineTIFFTagSet.DotRange - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.DotRange() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.DotRange

BaselineTIFFTagSet.ExtraSamples - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ExtraSamples() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ExtraSamples

BaselineTIFFTagSet.FillOrder - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.FillOrder() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.FillOrder

BaselineTIFFTagSet.FreeByteCounts - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.FreeByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.FreeByteCounts

BaselineTIFFTagSet.FreeOffsets - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.FreeOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.FreeOffsets

BaselineTIFFTagSet.GrayResponseCurve - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.GrayResponseCurve() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.GrayResponseCurve

BaselineTIFFTagSet.GrayResponseUnit - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.GrayResponseUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.GrayResponseUnit

BaselineTIFFTagSet.HalftoneHints - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.HalftoneHints() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.HalftoneHints

BaselineTIFFTagSet.HostComputer - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.HostComputer() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.HostComputer

BaselineTIFFTagSet.ICCProfile - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ICCProfile() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ICCProfile

BaselineTIFFTagSet.ImageDescription - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ImageDescription() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageDescription

BaselineTIFFTagSet.ImageLength - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ImageLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageLength

BaselineTIFFTagSet.ImageWidth - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ImageWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageWidth

BaselineTIFFTagSet.InkNames - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.InkNames() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.InkNames

BaselineTIFFTagSet.InkSet - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.InkSet() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.InkSet

BaselineTIFFTagSet.JPEGACTables - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGACTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGACTables

BaselineTIFFTagSet.JPEGDCTables - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGDCTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGDCTables

BaselineTIFFTagSet.JPEGInterchangeFormat - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGInterchangeFormat() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGInterchangeFormat

BaselineTIFFTagSet.JPEGInterchangeFormatLength - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGInterchangeFormatLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGInterchangeFormatLength

BaselineTIFFTagSet.JPEGLosslessPredictors - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGLosslessPredictors() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGLosslessPredictors

BaselineTIFFTagSet.JPEGPointTransforms - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGPointTransforms() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGPointTransforms

BaselineTIFFTagSet.JPEGProc - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGProc() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGProc

BaselineTIFFTagSet.JPEGQTables - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGQTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGQTables

BaselineTIFFTagSet.JPEGRestartInterval - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGRestartInterval() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGRestartInterval

BaselineTIFFTagSet.JPEGTables - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.JPEGTables() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.JPEGTables

BaselineTIFFTagSet.Make - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Make() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Make

BaselineTIFFTagSet.MaxSampleValue - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.MaxSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.MaxSampleValue

BaselineTIFFTagSet.MinSampleValue - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.MinSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.MinSampleValue

BaselineTIFFTagSet.Model - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Model() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Model

BaselineTIFFTagSet.NewSubfileType - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.NewSubfileType() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.NewSubfileType

BaselineTIFFTagSet.NumberOfInks - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.NumberOfInks() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.NumberOfInks

BaselineTIFFTagSet.Orientation - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Orientation() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Orientation

BaselineTIFFTagSet.PageName - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PageName() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PageName

BaselineTIFFTagSet.PageNumber - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PageNumber() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PageNumber

BaselineTIFFTagSet.PhotometricInterpretation - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PhotometricInterpretation() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PhotometricInterpretation

BaselineTIFFTagSet.PlanarConfiguration - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PlanarConfiguration() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PlanarConfiguration

BaselineTIFFTagSet.Predictor - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Predictor() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Predictor

BaselineTIFFTagSet.PrimaryChromaticities - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.PrimaryChromaticities() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PrimaryChromaticities

BaselineTIFFTagSet.ReferenceBlackWhite - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ReferenceBlackWhite() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ReferenceBlackWhite

BaselineTIFFTagSet.ResolutionUnit - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.ResolutionUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ResolutionUnit

BaselineTIFFTagSet.RowsPerStrip - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.RowsPerStrip() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.RowsPerStrip

BaselineTIFFTagSet.SampleFormat - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SampleFormat() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SampleFormat

BaselineTIFFTagSet.SamplesPerPixel - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SamplesPerPixel() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SamplesPerPixel

BaselineTIFFTagSet.SMaxSampleValue - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SMaxSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SMaxSampleValue

BaselineTIFFTagSet.SMinSampleValue - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SMinSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SMinSampleValue

BaselineTIFFTagSet.Software - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Software() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Software

BaselineTIFFTagSet.StripByteCounts - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.StripByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.StripByteCounts

BaselineTIFFTagSet.StripOffsets - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.StripOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.StripOffsets

BaselineTIFFTagSet.SubfileType - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.SubfileType() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SubfileType

BaselineTIFFTagSet.T4Options - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.T4Options() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.T4Options

BaselineTIFFTagSet.T6Options - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.T6Options() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.T6Options

BaselineTIFFTagSet.TargetPrinter - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TargetPrinter() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TargetPrinter

BaselineTIFFTagSet.Threshholding - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.Threshholding() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Threshholding

BaselineTIFFTagSet.TileByteCounts - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TileByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileByteCounts

BaselineTIFFTagSet.TileLength - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TileLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileLength

BaselineTIFFTagSet.TileOffsets - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TileOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileOffsets

BaselineTIFFTagSet.TileWidth - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TileWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileWidth

BaselineTIFFTagSet.TransferFunction - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TransferFunction() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TransferFunction

BaselineTIFFTagSet.TransferRange - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.TransferRange() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TransferRange

BaselineTIFFTagSet.WhitePoint - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.WhitePoint() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.WhitePoint

BaselineTIFFTagSet.XPosition - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.XPosition() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.XPosition

BaselineTIFFTagSet.XResolution - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.XResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.XResolution

BaselineTIFFTagSet.YCbCrCoefficients - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YCbCrCoefficients() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrCoefficients

BaselineTIFFTagSet.YCbCrPositioning - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YCbCrPositioning() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrPositioning

BaselineTIFFTagSet.YCbCrSubSampling - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YCbCrSubSampling() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrSubSampling

BaselineTIFFTagSet.YPosition - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YPosition() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YPosition

BaselineTIFFTagSet.YResolution - Class in com.sun.media.imageio.plugins.tiff

BaselineTIFFTagSet.YResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YResolution

BaseMetadata - Interface in loci.formats.meta

BaseMetadata - Interface in ome.xml.meta

A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.

basename - Variable in class loci.formats.in.ZeissTIFFHandler.Plane

baseReader - Variable in class loci.plugins.in.ImportProcess

baseTiff - Variable in class loci.formats.in.MicromanagerReader.Position

BaseTiffReader - Class in loci.formats.in

BaseTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.

BaseTiffReader(String, String) - Constructor for class loci.formats.in.BaseTiffReader

Constructs a new BaseTiffReader.

BaseTiffReader(String, String[]) - Constructor for class loci.formats.in.BaseTiffReader

Constructs a new BaseTiffReader.

BaseZeissReader - Class in loci.formats.in

BaseZeissReader contains common functionality required by readers for Zeiss AxioVision formats.

BaseZeissReader(String, String) - Constructor for class loci.formats.in.BaseZeissReader

Constructs a new ZeissZVI reader.

BaseZeissReader(String, String[]) - Constructor for class loci.formats.in.BaseZeissReader

Constructs a new ZeissZVI reader.

BaseZeissReader.Charset - Enum in loci.formats.in

BaseZeissReader.Charset(int, String) - Constructor for enum loci.formats.in.BaseZeissReader.Charset

BaseZeissReader.Context - Enum in loci.formats.in

BaseZeissReader.Context() - Constructor for enum loci.formats.in.BaseZeissReader.Context

BaseZeissReader.DrawStyle - Enum in loci.formats.in

Line drawing styles.

BaseZeissReader.DrawStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.DrawStyle

BaseZeissReader.FeatureType - Enum in loci.formats.in

Feature types.

BaseZeissReader.FeatureType(int, int) - Constructor for enum loci.formats.in.BaseZeissReader.FeatureType

BaseZeissReader.FillStyle - Enum in loci.formats.in

Fill styles.

BaseZeissReader.FillStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.FillStyle

BaseZeissReader.Layer - Class in loci.formats.in

Layer class representing an AxioVision layer; used to contain a collection of shapes.

BaseZeissReader.Layer() - Constructor for class loci.formats.in.BaseZeissReader.Layer

BaseZeissReader.LineEndPositions - Enum in loci.formats.in

BaseZeissReader.LineEndPositions(int) - Constructor for enum loci.formats.in.BaseZeissReader.LineEndPositions

BaseZeissReader.LineEndStyle - Enum in loci.formats.in

Line ending styles.

BaseZeissReader.LineEndStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.LineEndStyle

BaseZeissReader.PointStyle - Enum in loci.formats.in

Point styles.

BaseZeissReader.PointStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.PointStyle

BaseZeissReader.Shape - Class in loci.formats.in

Shape class representing the metadata within an AxioVision Shape ROI

BaseZeissReader.Shape() - Constructor for class loci.formats.in.BaseZeissReader.Shape

BaseZeissReader.Tag - Class in loci.formats.in

Content of a single tag from a Tags block.

BaseZeissReader.Tag(int, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag

Constructor.

BaseZeissReader.Tag(int, String, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag

Constructor.

BaseZeissReader.TextAlignment - Enum in loci.formats.in

BaseZeissReader.TextAlignment(int) - Constructor for enum loci.formats.in.BaseZeissReader.TextAlignment

BasicAnnotation - Class in ome.xml.model

BasicAnnotation() - Constructor for class ome.xml.model.BasicAnnotation

Default constructor.

BasicAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BasicAnnotation

Constructs BasicAnnotation recursively from an XML DOM tree.

BasicAnnotation(BasicAnnotation) - Constructor for class ome.xml.model.BasicAnnotation

Copy constructor.

BATBlock - Class in loci.poi.poifs.storage

A block of block allocation table entries.

BATBlock(int) - Constructor for class loci.poi.poifs.storage.BATBlock

Create a single instance initialized with default values

BATBlock(int[], int, int, int) - Constructor for class loci.poi.poifs.storage.BATBlock

Create a single instance initialized (perhaps partially) with entries

BATManaged - Interface in loci.poi.poifs.filesystem

This interface defines behaviors for objects managed by the Block Allocation Table (BAT).

batsInHeader - Variable in class loci.poi.poifs.storage.HeaderBlockReader

baxcel - Variable in class loci.poi.hssf.record.formula.AttrPtg

bayerPattern - Variable in class loci.formats.in.MRWReader

bbox - Variable in class loci.formats.in.CellH5Reader

BBOX - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

bBox - Variable in class loci.formats.services.WlzServiceImpl

bbuf - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader

The current bit buffer

bbuf - Variable in class jj2000.j2k.entropy.decoder.ByteToBitInput

The bit buffer

bbuf - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

The bit buffer

BDReader - Class in loci.formats.in

BDReader is the file format reader for BD Pathway datasets.

BDReader() - Constructor for class loci.formats.in.BDReader

Constructs a new ScanR reader.

BEAM_SPLITTER_FILTER - Static variable in class loci.formats.in.ZeissLSMReader

BEAM_SPLITTER_FILTER_SET - Static variable in class loci.formats.in.ZeissLSMReader

BEBufferedRandomAccessFile - Class in jj2000.j2k.io

This class defines a Buffered Random Access File, where all I/O is considered to be big-endian, and extends the BufferedRandomAccessFile class.

BEBufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

BEBufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

BEBufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

BEBufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile

Constructor.

beforeRecordSerialize(int, short, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener

Fired before a given escher record is serialized.

beforeRecordSerialize(int, short, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener

begin - Variable in class loci.formats.FilePatternBlock

beginDecoding() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

This routine is called prior to a sequence of calls to the decode method, in order to allow any necessary tables or other structures to be initialized based on metadata values.

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

Invokes the superclass method and then sets instance variables on the basis of the metadata set on this decompressor.

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

BeginRecord - Class in loci.poi.hssf.record

The begin record defines the start of a block of records for a (grpahing data object.

BeginRecord() - Constructor for class loci.poi.hssf.record.BeginRecord

BeginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BeginRecord

Constructs a BeginRecord record and sets its fields appropriately.

BETA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the second lifting step coefficient

BETA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the second lifting step coefficient

BEZIER_WITH_ARROW - Static variable in class loci.formats.in.ZeissLSMReader

BF - Class in loci.plugins

Miscellaneous plugins utility methods.

BF() - Constructor for class loci.plugins.BF

bf_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

output destination for bit codes

BFVirtualStack - Class in loci.plugins.util

Subclass of VirtualStack that uses Bio-Formats to read planes on demand.

BFVirtualStack(String, IFormatReader, boolean, boolean, boolean) - Constructor for class loci.plugins.util.BFVirtualStack

BGR - Static variable in class loci.formats.in.CellSensReader

BGR_24 - Static variable in class loci.formats.in.ZeissCZIReader

BGR_48 - Static variable in class loci.formats.in.ZeissCZIReader

BGR_FLOAT - Static variable in class loci.formats.in.ZeissCZIReader

BGRA_8 - Static variable in class loci.formats.in.ZeissCZIReader

bgrToRgb(byte[], boolean, int, int) - Static method in class loci.formats.ImageTools

BH_HEADER_CHKSUM - Static variable in class loci.formats.in.SDTInfo

BH_HEADER_NOT_VALID - Static variable in class loci.formats.in.SDTInfo

BH_HEADER_VALID - Static variable in class loci.formats.in.SDTInfo

bi - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The destination image.

bi - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

The destination image.

BI_BITFIELDS - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_JPEG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_PNG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_RLE4 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BI_RLE8 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

BiffViewer - Class in loci.poi.hssf.dev

Utillity for reading in BIFF8 records and displaying data from them.

BiffViewer(String[]) - Constructor for class loci.poi.hssf.dev.BiffViewer

Creates new BiffViewer

BiffViewer.BiffviewRecordInputStream - Class in loci.poi.hssf.dev

BiffViewer.BiffviewRecordInputStream(InputStream) - Constructor for class loci.poi.hssf.dev.BiffViewer.BiffviewRecordInputStream

BiffViewer.RecordDetails - Class in loci.poi.hssf.dev

This record supports dumping of completed continue records.

BiffViewer.RecordDetails(short, short, int, Record) - Constructor for class loci.poi.hssf.dev.BiffViewer.RecordDetails

BIFormatReader - Class in loci.formats.in

BIFormatReader is the superclass for file format readers that use java.awt.image.BufferedImage as the native data type.

BIFormatReader(String, String) - Constructor for class loci.formats.in.BIFormatReader

Constructs a new BIFormatReader.

BIFormatReader(String, String[]) - Constructor for class loci.formats.in.BIFormatReader

Constructs a new BIFormatReader.

BIG - Static variable in class loci.formats.tiff.TiffConstants

BIG_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType

Identifier for big-endian byte ordering (i.e.

BIG_ENDIAN_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the BigEndian attribute.

BIG_SPOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

BIG_SPOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Large spots

BIG_TIFF - Static variable in class loci.formats.tiff.IFD

BIG_TIFF - Static variable in class loci.tests.testng.TiffWriterTest

The big tiff flags.

BIG_TIFF_BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants

The number of bytes in each IFD entry of a BigTIFF file.

BIG_TIFF_CUTOFF - Static variable in class loci.formats.out.TiffWriter

Number of bytes at which to automatically switch to BigTIFF This is approximately 3.9 GB instead of 4 GB, to allow space for the IFDs.

BIG_TIFF_MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants

BIG_TIFF_SUFFIXES - Static variable in class loci.formats.out.TiffWriter

BigBlock - Class in loci.poi.poifs.storage

BigBlock() - Constructor for class loci.poi.poifs.storage.BigBlock

bigBlocks - Variable in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

bigBlockSize - Variable in class loci.poi.poifs.eventfilesystem.POIFSReader

bigBlockSize - Variable in class loci.poi.poifs.filesystem.POIFSDocument

bigBlockSize - Variable in class loci.poi.poifs.filesystem.POIFSFileSystem

bigBlockSize - Variable in class loci.poi.poifs.storage.HeaderBlockWriter

bigBlockSize - Variable in class loci.poi.poifs.storage.RawDataBlockList

bigEndian - Variable in class ome.xml.model.BinData

bigEndian - Variable in class ome.xml.model.Pixels

bigEndianString - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

bigEndianTransferSyntax - Variable in class loci.formats.in.DicomReader

bigImage - Variable in class loci.tests.testng.OpenBytesPerformanceTest

bigTiff - Variable in class loci.formats.tiff.TiffParser

Whether or not the TIFF file contains BigTIFF data.

bigTiff - Variable in class loci.formats.tiff.TiffSaver

Whether or not to write BigTIFF data.

bin - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The wrapper to read bits for the packet heads

bin - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The bit based input for arithmetic coding bypass (i.e.

bin - Variable in class loci.formats.in.InCellReader

BIN_DATA_NS - Static variable in class ome.specification.XMLWriter

Identifies the BinData tag.

BIN_DATA_TAG - Static variable in class ome.specification.XMLWriter

Identifies the BinData tag.

BIN_NS - Static variable in class ome.specification.XMLWriter

The XML namespace.

binary - Variable in class loci.formats.in.EPSReader

Flag indicating binary data.

BINARY_SETUP - Static variable in class loci.formats.in.SDTInfo

BinaryDataInput - Interface in jj2000.j2k.io

This interface defines the input of binary data from streams and/or files.

BinaryDataOutput - Interface in jj2000.j2k.io

This interface defines the output of binary data to streams and/or files.

BinaryFile - Class in ome.xml.model

BinaryFile() - Constructor for class ome.xml.model.BinaryFile

Default constructor.

BinaryFile(Element, OMEModel) - Constructor for class ome.xml.model.BinaryFile

Constructs BinaryFile recursively from an XML DOM tree.

BinaryFile(BinaryFile) - Constructor for class ome.xml.model.BinaryFile

Copy constructor.

binaryFile - Variable in class ome.xml.model.FileAnnotation

BinaryOnly - Class in ome.xml.model

BinaryOnly() - Constructor for class ome.xml.model.BinaryOnly

Default constructor.

BinaryOnly(Element, OMEModel) - Constructor for class ome.xml.model.BinaryOnly

Constructs BinaryOnly recursively from an XML DOM tree.

BinaryOnly(BinaryOnly) - Constructor for class ome.xml.model.BinaryOnly

Copy constructor.

binaryOnly - Variable in class ome.xml.model.OME

BinaryTree - Class in loci.poi.util

Red-Black tree-based implementation of Map.

BinaryTree() - Constructor for class loci.poi.util.BinaryTree

Construct a new BinaryTree

BinaryTree(Map) - Constructor for class loci.poi.util.BinaryTree

Constructs a new BinaryTree from an existing Map, with keys and values sorted

BinaryTree.BinaryTreeIterator - Class in loci.poi.util

BinaryTree.BinaryTreeIterator(int) - Constructor for class loci.poi.util.BinaryTree.BinaryTreeIterator

Constructor

BinaryTree.Node - Class in loci.poi.util

BinaryTree.Node(Comparable, Comparable) - Constructor for class loci.poi.util.BinaryTree.Node

Make a new cell with given key and value, and with null links, and black (true) colors.

bind_ptr - Variable in class mdbtools.libmdb.MdbColumn

binData - Variable in class loci.formats.in.OMEXMLReader

binData - Variable in class ome.xml.model.BinaryFile

BinData - Class in ome.xml.model

BinData() - Constructor for class ome.xml.model.BinData

Default constructor.

BinData(Element, OMEModel) - Constructor for class ome.xml.model.BinData

Constructs BinData recursively from an XML DOM tree.

BinData(BinData) - Constructor for class ome.xml.model.BinData

Copy constructor.

binDataBlocks - Variable in class ome.xml.model.Mask

binDataBlocks - Variable in class ome.xml.model.Pixels

binDataOffsets - Variable in class loci.formats.in.OMEXMLReader

binning - Variable in class loci.formats.in.BDReader

binning - Variable in class loci.formats.in.BioRadSCNReader

binning - Variable in class loci.formats.in.MetamorphHandler

binning - Variable in class loci.formats.in.MetamorphReader

binning - Variable in class loci.formats.in.MicromanagerReader.Position

binning - Variable in class loci.formats.in.ND2Handler

binning - Variable in class loci.formats.in.PCIReader

binning - Variable in class loci.formats.in.SimplePCITiffReader

binning - Variable in class loci.formats.in.ZeissLSMReader

binning - Variable in class loci.formats.in.ZeissLSMReader.Recording

BINNING - Static variable in class ome.specification.XMLMockObjects

The default binning value.

binning - Variable in class ome.xml.model.DetectorSettings

Binning - Enum in ome.xml.model.enums

Binning(String) - Constructor for enum ome.xml.model.enums.Binning

BinningEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Binning.

BinningEnumHandler() - Constructor for class ome.xml.model.enums.handlers.BinningEnumHandler

binnings - Variable in class loci.formats.in.FlexReader

binnings - Variable in class loci.formats.in.ZeissCZIReader

binningX - Variable in class loci.formats.in.CellSensReader.Pyramid

binningY - Variable in class loci.formats.in.CellSensReader.Pyramid

binX - Variable in class loci.formats.in.FlexReader

Camera binning values.

binX - Variable in class loci.formats.in.IvisionReader

binY - Variable in class loci.formats.in.FlexReader

Camera binning values.

binY - Variable in class loci.formats.in.IvisionReader

BioFormatsExtensionPrinter - Class in loci.formats.tools

This class is used to generate a text file containing all of the image file extensions supported by Bio-Formats.

BioFormatsExtensionPrinter() - Constructor for class loci.formats.tools.BioFormatsExtensionPrinter

BioRadGelReader - Class in loci.formats.in

BioRadGelReader is the file format reader for Bio-Rad gel files.

BioRadGelReader() - Constructor for class loci.formats.in.BioRadGelReader

Constructs a new Bio-Rad gel reader.

BioRadReader - Class in loci.formats.in

BioRadReader is the file format reader for Bio-Rad PIC files.

BioRadReader() - Constructor for class loci.formats.in.BioRadReader

Constructs a new BioRadReader.

BioRadReader.BioRadHandler - Class in loci.formats.in

SAX handler for parsing XML.

BioRadReader.BioRadHandler() - Constructor for class loci.formats.in.BioRadReader.BioRadHandler

BioRadReader.Note - Class in loci.formats.in

BioRadReader.Note() - Constructor for class loci.formats.in.BioRadReader.Note

BioRadSCNReader - Class in loci.formats.in

BioRadSCNReader is the reader for Bio-Rad .scn files

BioRadSCNReader() - Constructor for class loci.formats.in.BioRadSCNReader

Constructs a new Bio-Rad .scn reader.

BioRadSCNReader.SCNHandler - Class in loci.formats.in

BioRadSCNReader.SCNHandler() - Constructor for class loci.formats.in.BioRadSCNReader.SCNHandler

biReader - Variable in class loci.formats.gui.DataConverter

bit - Variable in class loci.formats.codec.BitWriter

Deprecated.

Bit index into current byte of the buffer.

BIT - Static variable in class loci.formats.FormatTools

Identifies the BIT data type used to store pixel values.

BIT_DEPTH - Static variable in class loci.formats.in.CellSensReader

BitBuffer - Class in loci.formats.codec

Deprecated.

Use loci.common.RandomAccessInputStream instead

BitBuffer(byte[]) - Constructor for class loci.formats.codec.BitBuffer

Deprecated.

Default constructor.

bitDepth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

bitDepth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

bitDepth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

bitDepth - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

bitDepth - Variable in class loci.formats.in.CellSensReader.Pyramid

BitDepth - Enum in ome.jxr.image

Enumeration of available image bit depth types.

BitDepth(Integer...) - Constructor for enum ome.jxr.image.BitDepth

bitDepths - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Various bit depth

bitDepthScale - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

BitField - Class in loci.poi.util

Manage operations dealing with bit-mapped fields.

BitField(int) - Constructor for class loci.poi.util.BitField

Create a BitField instance

BitFieldFactory - Class in loci.poi.util

Returns immutable Btfield instances.

BitFieldFactory() - Constructor for class loci.poi.util.BitFieldFactory

BitFile - Class in com.sun.media.imageioimpl.common

Came from GIFEncoder initially.

BitFile(ImageOutputStream, boolean) - Constructor for class com.sun.media.imageioimpl.common.BitFile

bitmapFileSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

bitmapOffset - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

BITMASK_COMPRESSION - Static variable in class loci.formats.in.FlowSightReader

bitMasks - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

BitOutputBuffer - Class in jj2000.j2k.codestream.writer

This class implements a buffer for writing bits, with the required bit stuffing policy for the packet headers.

BitOutputBuffer() - Constructor for class jj2000.j2k.codestream.writer.BitOutputBuffer

Creates a new BitOutputBuffer width a buffer of length 'SZ_INIT'.

bitPointer - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

bitPos - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

bits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Output bit buffer.

bits - Variable in class loci.formats.in.TargaReader

bits - Variable in enum ome.jxr.ifd.PixelType

BITS_ALLOCATED - Static variable in class loci.formats.in.DicomReader

BITS_PER_COMPONENT_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

BITS_PER_SAMPLE - Static variable in class loci.formats.tiff.IFD

bitsLeft_ - Variable in class com.sun.media.imageioimpl.common.BitFile

BitsPerComponentBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Bits Per Component Box of JPEG JP2 file format.

BitsPerComponentBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Counstructs a BitsPerComponentBox from the provided byte array containing the bit depths of each color component.

BitsPerComponentBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Constructs a BitsPerComponentBox based on the provide org.w3c.dom.Node.

bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

bitsPerPixel - Variable in class loci.formats.CoreMetadata

Number of valid bits per pixel.

bitsPerPixel - Variable in class loci.formats.in.DicomReader

Bits per pixel.

bitsPerPixel - Variable in class loci.formats.in.NativeQTReader

Pixel depth.

bitsPerSample - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the BitsPerSample tag.

bitsPerSample - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

bitsPerSample - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

bitsPerSample - Variable in class loci.formats.codec.CodecOptions

Number of bits per channel.

bitsPerSampleCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

bitsPerScanline - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

bitsToGet - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

bitsToGet - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

BitstreamReaderAgent - Class in jj2000.j2k.codestream.reader

This is the generic interface for bit stream reader agents.

BitstreamReaderAgent(HeaderDecoder, DecoderSpecs) - Constructor for class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Initializes members of this class.

BitToByteOutput - Class in jj2000.j2k.entropy.encoder

This class provides an adapter to perform bit based output on byte based output objects that inherit from a 'ByteOutputBuffer' class.

BitToByteOutput(ByteOutputBuffer) - Constructor for class jj2000.j2k.entropy.encoder.BitToByteOutput

Instantiates a new 'BitToByteOutput' object that uses 'out' as the underlying byte based output.

BitWriter - Class in loci.formats.codec

Deprecated.

Use loci.common.RandomAccessOutputStream instead

BitWriter() - Constructor for class loci.formats.codec.BitWriter

Deprecated.

Constructs a new bit writer.

BitWriter(int) - Constructor for class loci.formats.codec.BitWriter

Deprecated.

Constructs a new bit writer with the given initial buffer size.

biWriter - Variable in class loci.formats.gui.DataConverter

bizarreMultichannelAcquisition - Variable in class loci.formats.in.MetamorphReader

BLACK - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

The CCITT numerical definition of black.

black - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

blank(byte[]) - Method in class loci.formats.in.PrairieReader

Blanks out and returns the given buffer.

blankImage(int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates a blank image with the given dimensions and transfer type.

BlankRecord - Class in loci.poi.hssf.record

Title: Blank cell record

BlankRecord() - Constructor for class loci.poi.hssf.record.BlankRecord

Creates a new instance of BlankRecord

BlankRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BlankRecord

Constructs a BlankRecord and sets its fields appropriately

blankThumbBytes - Variable in class loci.formats.FileStitcher.ExternalSeries

blip - Variable in class loci.poi.hssf.usermodel.HSSFPictureData

Underlying escher blip record containing the bitmap data.

BLIP__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties

BLIP__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties

BLIP__BLIPTODISPLAY - Static variable in class loci.poi.ddf.EscherProperties

BLIP__BRIGHTNESSSETTING - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CONTRASTSETTING - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMLEFT - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMRIGHT - Static variable in class loci.poi.ddf.EscherProperties

BLIP__CROPFROMTOP - Static variable in class loci.poi.ddf.EscherProperties

BLIP__DOUBLEMOD - Static variable in class loci.poi.ddf.EscherProperties

BLIP__GAMMA - Static variable in class loci.poi.ddf.EscherProperties

BLIP__NOHITTESTPICTURE - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREACTIVE - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREBILEVEL - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREFILLMOD - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREGRAY - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTUREID - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PICTURELINE - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PRINTBLIP - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PRINTBLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties

BLIP__PRINTFLAGS - Static variable in class loci.poi.ddf.EscherProperties

BLIP__TRANSPARENTCOLOR - Static variable in class loci.poi.ddf.EscherProperties

BlkImgDataSrc - Interface in jj2000.j2k.image

This interface defines the methods to transfer image data in blocks, without following any particular order (random access).

block - Variable in class loci.formats.FilePatternBlock

String representation of this block.

block0 - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Block used to request component with index 0

block0 - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Block used to request component 0

block1 - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Block used to request component with index 1

block1 - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Block used to request component 1

block2 - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Block used to request component with index 2

block2 - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Block used to request component 2

BLOCK_END - Static variable in class loci.formats.FilePatternBlock

BLOCK_SIZE - Static variable in class loci.poi.hssf.record.DBCellRecord

BLOCK_START - Static variable in class loci.formats.FilePatternBlock

blockAligned - Variable in class jj2000.j2k.roi.encoder.ROIScaler

Flag indicating if block aligned ROIs are used

BlockAllocationTableReader - Class in loci.poi.poifs.storage

This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.

BlockAllocationTableReader(int, int[], int, int, BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader

create a BlockAllocationTableReader for an existing filesystem.

BlockAllocationTableReader(ListManagedBlock[], BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader

create a BlockAllocationTableReader from an array of raw data blocks

BlockAllocationTableReader() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader

Constructor BlockAllocationTableReader

BlockAllocationTableWriter - Class in loci.poi.poifs.storage

This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.

BlockAllocationTableWriter() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableWriter

create a BlockAllocationTableWriter

blockData - Variable in class loci.formats.in.ZeissLSMReader.SubBlock

BlockingInputStream - Class in loci.poi.util

Implementation of a BlockingInputStream to provide data to RawDataBlock that expects data in 512 byte chunks.

BlockingInputStream(InputStream) - Constructor for class loci.poi.util.BlockingInputStream

blockLength - Variable in class loci.formats.in.APNGReader.PNGInputStream

blockLength - Variable in class loci.formats.in.SDTInfo

reserved2 now contains block (set) length.

BlockList - Interface in loci.poi.poifs.storage

Interface for lists of blocks that are mapped by block allocation tables

BlockListImpl - Class in loci.poi.poifs.storage

A simple implementation of BlockList

BlockListImpl() - Constructor for class loci.poi.poifs.storage.BlockListImpl

Constructor BlockListImpl

blockNo - Variable in class loci.formats.in.SDTInfo

Number of the block in the file.

blockPointer - Variable in class loci.formats.in.APNGReader.PNGInputStream

blockRandomised - Variable in class loci.common.CBZip2InputStream

blocks - Variable in class loci.formats.FilePattern

List of pattern blocks for this file pattern.

blocks - Variable in class loci.formats.in.APNGReader

blocks_ - Variable in class com.sun.media.imageioimpl.common.BitFile

note this also indicates gif format BITFile.

blockSize - Variable in class loci.formats.in.GIFReader

Block size.

blockSize - Variable in class loci.formats.in.VolocityReader.Stack

blockSize - Variable in class loci.poi.poifs.storage.BATBlock

blockSize - Variable in class loci.poi.poifs.storage.DocumentBlock

blockSize - Variable in class loci.poi.poifs.storage.PropertyBlock

blockSize - Variable in class loci.poi.poifs.storage.RawDataBlock

blockSize100k - Variable in class loci.common.CBZip2InputStream

always: in the range 0 ..

blockType - Variable in class loci.formats.in.APNGReader.PNGInputStream

blockType - Variable in class loci.formats.in.SDTInfo

See blockType defines below.

BlockWritable - Interface in loci.poi.poifs.storage

An interface for persisting block storage of POIFS components.

blue - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

blue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blue - Variable in class loci.poi.hssf.record.PColor

blue - Variable in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

BLUE_GAIN - Static variable in class loci.formats.in.CellSensReader

BLUE_MIN - Static variable in class loci.plugins.in.Colorizer

BLUE_OFFSET - Static variable in class loci.formats.in.CellSensReader

BLUE_TO_GREEN_MIN - Static variable in class loci.plugins.in.Colorizer

blueGain - Variable in class loci.formats.in.CellSensReader.Pyramid

blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueOffset - Variable in class loci.formats.in.CellSensReader.Pyramid

blueOffset - Static variable in class org.libjpegturbo.turbojpeg.TJ

blueShort - Variable in class loci.formats.gui.Index16ColorModel

Lookup tables.

blueX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

blueZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

BMP - Static variable in class loci.formats.in.CellSensReader

BMP_MAGIC_STRING - Static variable in class loci.formats.in.BMPReader

bmpBitsPerPixel - Variable in class loci.formats.in.AVIReader

bmpColorsUsed - Variable in class loci.formats.in.AVIReader

bmpCompression - Variable in class loci.formats.in.AVIReader

BMPConstants - Interface in com.sun.media.imageioimpl.plugins.bmp

BMPImageReader - Class in com.sun.media.imageioimpl.plugins.bmp

This class is the Java Image IO plugin reader for BMP images.

BMPImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Constructs BMPImageReader from the provided ImageReaderSpi.

BMPImageReader.EmbeddedProgressAdapter - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageReader.EmbeddedProgressAdapter() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter

BMPImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

BMPImageWriteParam - Class in com.sun.media.imageio.plugins.bmp

A subclass of ImageWriteParam for encoding images in the BMP format.

BMPImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Constructs a BMPImageWriteParam set to use a given Locale and with default values for all parameters.

BMPImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Constructs an BMPImageWriteParam object with default values for all parameters and a null Locale.

BMPImageWriter - Class in com.sun.media.imageioimpl.plugins.bmp

The Java Image IO plugin writer for encoding a binary RenderedImage into a BMP format.

BMPImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

Constructs BMPImageWriter based on the provided ImageWriterSpi.

BMPImageWriter.IIOWriteProgressAdapter - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageWriter.IIOWriteProgressAdapter() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter

BMPImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.bmp

BMPImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

BMPMetadata - Class in com.sun.media.imageioimpl.plugins.bmp

BMPMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

BMPMetadata(IIOMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

BMPMetadataFormat - Class in com.sun.media.imageioimpl.plugins.bmp

BMPMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat

BMPMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.bmp

BMPMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources

BMPReader - Class in loci.formats.in

BMPReader is the file format reader for Microsoft Bitmap (BMP) files.

BMPReader() - Constructor for class loci.formats.in.BMPReader

Constructs a new BMP reader.

bmpScanLineSize - Variable in class loci.formats.in.AVIReader

bmpVersion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

bmpWidth - Variable in class loci.formats.in.AVIReader

bms - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

By-pass mode specifications

BOFRecord - Class in loci.poi.hssf.record

Title: Beginning Of File

BOFRecord() - Constructor for class loci.poi.hssf.record.BOFRecord

Constructs an empty BOFRecord with no fields set.

BOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BOFRecord

Constructs a BOFRecord and sets its fields appropriately

BogusColorSpace - Class in com.sun.media.imageioimpl.common

A dummy ColorSpace to enable ColorModel for image data which do not have an innate color representation.

BogusColorSpace(int) - Constructor for class com.sun.media.imageioimpl.common.BogusColorSpace

Constructs a bogus ColorSpace.

bold - Variable in class loci.formats.in.BaseZeissReader.Shape

BOLDWEIGHT_BOLD - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Bold boldness (bold)

BOLDWEIGHT_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Normal boldness (not bold)

book - Variable in class loci.poi.hssf.model.FormulaParser

book - Variable in class loci.poi.hssf.usermodel.HSSFCell

book - Variable in class loci.poi.hssf.usermodel.HSSFName

book - Variable in class loci.poi.hssf.usermodel.HSSFRichTextString

book - Variable in class loci.poi.hssf.usermodel.HSSFRow

reference to containing low level Workbook

book - Variable in class loci.poi.hssf.usermodel.HSSFSheet

BookBoolRecord - Class in loci.poi.hssf.record

Title: Save External Links record (BookBool)

BookBoolRecord() - Constructor for class loci.poi.hssf.record.BookBoolRecord

BookBoolRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BookBoolRecord

Constructs a BookBoolRecord and sets its fields appropriately

BOOLEAN - Static variable in class loci.formats.in.CellSensReader

BooleanAnnotation - Class in ome.xml.model

BooleanAnnotation() - Constructor for class ome.xml.model.BooleanAnnotation

Default constructor.

BooleanAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BooleanAnnotation

Constructs BooleanAnnotation recursively from an XML DOM tree.

BooleanAnnotation(BooleanAnnotation) - Constructor for class ome.xml.model.BooleanAnnotation

Copy constructor.

booleanAnnotations - Variable in class ome.xml.model.StructuredAnnotations

BooleanOption - Class in loci.plugins.prefs

A boolean option for one of the plugins.

BooleanOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.BooleanOption

Constructs a boolean option with the parameters from the given map.

BooleanOption(String, boolean, String, String, boolean) - Constructor for class loci.plugins.prefs.BooleanOption

Constructs a boolean option with the given parameters.

BoolErrRecord - Class in loci.poi.hssf.record

Creates new BoolErrRecord.

BoolErrRecord() - Constructor for class loci.poi.hssf.record.BoolErrRecord

Creates new BoolErrRecord

BoolErrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoolErrRecord

Constructs a BoolErr record and sets its fields appropriately.

BoolPtg - Class in loci.poi.hssf.record.formula

Boolean (boolean) Stores a (java) boolean value in a formula.

BoolPtg() - Constructor for class loci.poi.hssf.record.formula.BoolPtg

BoolPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.BoolPtg

BoolPtg(String) - Constructor for class loci.poi.hssf.record.formula.BoolPtg

BORDER - Static variable in class loci.plugins.shortcut.ShortcutPanel

Number of pixels for window border.

border - Variable in class loci.poi.hssf.record.DatRecord

BORDER_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dash-dot border

BORDER_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dash-dot-dot border

BORDER_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dash border

BORDER_DOTTED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

hair-line border

BORDER_DOUBLE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

double-line border

BORDER_HAIR - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

dot border

BORDER_MEDIUM - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Medium border

BORDER_MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

medium dash-dot border

BORDER_MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

medium dash-dot-dot border

BORDER_MEDIUM_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Medium dashed border

BORDER_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

No border

BORDER_SLANTED_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

slanted dash-dot border

BORDER_THICK - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thick border

BORDER_THIN - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Thin border

BORDER_TYPE_REGULAR - Static variable in class loci.poi.hssf.record.FrameRecord

BORDER_TYPE_SHADOW - Static variable in class loci.poi.hssf.record.FrameRecord

bordL - Variable in class loci.formats.in.SDTInfo

bordU - Variable in class loci.formats.in.SDTInfo

bottomHalfSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

bottomLeftQuarterSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

BottomMargin - Static variable in class loci.poi.hssf.model.Sheet

BottomMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

bottomMargin - Variable in class ome.jxr.parser.DatastreamParser

BottomMarginRecord - Class in loci.poi.hssf.record

Record for the bottom margin.

BottomMarginRecord() - Constructor for class loci.poi.hssf.record.BottomMarginRecord

BottomMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BottomMarginRecord

Constructs a BottomMargin record and sets its fields appropriately.

bottomRightQuarterSize - Variable in class loci.tests.testng.OpenBytesPerformanceTest

BoundSheetRecord - Class in loci.poi.hssf.record

Title: Bound Sheet Record (aka BundleSheet)

BoundSheetRecord() - Constructor for class loci.poi.hssf.record.BoundSheetRecord

BoundSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoundSheetRecord

Constructs a BoundSheetRecord and sets its fields appropriately

boundsheets - Variable in class loci.poi.hssf.model.Workbook

holds the "boundsheet" records (aka bundlesheet) so that they can have their reference to their "BOF" marker

boundValues - Variable in class loci.formats.services.MDBServiceImpl

boutT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The raw bit output used, for each thread

Box - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to create the box of JP2 file format.

Box(int, int, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box instance using the provided the box type and the box content in byte array format.

Box(int, int, long, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box instance using the provided the box type, the box extra length, and the box content in byte array format.

Box(ImageInputStream, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box instance from the provided ImageInputStream at the specified position.

Box(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Constructs a Box from an "unknown" Node.

BOX_SIZE - Static variable in class loci.formats.in.FakeReader

boxClasses - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

A Hashtable contains the class names for each type of the boxes.

boxes - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

The boxes of JP2 file used as meta data, i.

boxes - Variable in class loci.plugins.in.SeriesDialog

bpc - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Bits per component

BPC_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

base length of Bits Per Component box

bpcVaries - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Flag indicating whether number of bits per component varies

bpixels - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

bpos - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader

The position of the next bit to read in the bit buffer (0 means empty, 8 full)

bpos - Variable in class jj2000.j2k.entropy.decoder.ByteToBitInput

The position of the next bit to get from the byte buffer.

bpos - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

The position of the next bit to put in the bit buffer.

bpp - Variable in class loci.formats.in.BaseZeissReader

Number of bytes per pixel.

bpp - Variable in class loci.formats.in.BMPReader

Number of bits per pixel.

bpp - Variable in class loci.formats.in.MIASReader

bpp - Variable in class loci.formats.out.CellH5Writer

bpp - Variable in class loci.tests.testng.OpenBytesPerformanceTest

branch - Variable in class loci.formats.codec.HuffmanCodec.Decoder

brand - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

The element values.

breader - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

BreakMap - Variable in class loci.poi.hssf.record.PageBreakRecord

breaks - Variable in class loci.poi.hssf.record.PageBreakRecord

BRICKS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

BRICKS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Brick-like layout

BRIGHT_FIELD - Static variable in class loci.formats.in.LegacyND2Reader

BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader

BRIGHTNESS_VALUE - Static variable in class loci.formats.tiff.IFD

brokenNotes - Variable in class loci.formats.in.BioRadReader

BrowserOptionsWindow - Class in loci.plugins.util

Extension of JFrame that allows the user to adjust caching settings.

BrowserOptionsWindow(String, Cache, String[]) - Constructor for class loci.plugins.util.BrowserOptionsWindow

BrukerReader - Class in loci.formats.in

BrukerReader is the file format reader for Bruker MRI files.

BrukerReader() - Constructor for class loci.formats.in.BrukerReader

Constructs a new Bruker reader.

bsBuff - Variable in class loci.common.CBZip2InputStream

bsGetBit() - Method in class loci.common.CBZip2InputStream

bsGetInt() - Method in class loci.common.CBZip2InputStream

bsGetUByte() - Method in class loci.common.CBZip2InputStream

bsLive - Variable in class loci.common.CBZip2InputStream

bspos - Variable in class loci.poi.hssf.model.WorkbookRecordList

bsR(int) - Method in class loci.common.CBZip2InputStream

BSTORE_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

bsWriter - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

The bit-stream writer

BT_DIB - Static variable in class loci.poi.ddf.EscherBSERecord

BT_EMF - Static variable in class loci.poi.ddf.EscherBSERecord

BT_ERROR - Static variable in class loci.poi.ddf.EscherBSERecord

BT_JPEG - Static variable in class loci.poi.ddf.EscherBSERecord

BT_PICT - Static variable in class loci.poi.ddf.EscherBSERecord

BT_PNG - Static variable in class loci.poi.ddf.EscherBSERecord

BT_UNKNOWN - Static variable in class loci.poi.ddf.EscherBSERecord

BT_WMF - Static variable in class loci.poi.ddf.EscherBSERecord

BUBBLE_SERIES_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord

BUBBLE_SERIES_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord

BUBBLE_SERIES_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord

BUBBLE_SERIES_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord

bucketAbsoluteOffsets - Variable in class loci.poi.hssf.record.SSTRecord

Offsets from the beginning of the SST record (even across continuations)

bucketAbsoluteOffsets - Variable in class loci.poi.hssf.record.SSTSerializer

Offsets from the beginning of the SST record (even across continuations)

bucketRelativeOffsets - Variable in class loci.poi.hssf.record.SSTRecord

Offsets relative the start of the current SST or continue record

bucketRelativeOffsets - Variable in class loci.poi.hssf.record.SSTSerializer

Offsets relative the start of the current SST or continue record

buf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

The line buffer.

buf - Variable in class jj2000.j2k.codestream.writer.BitOutputBuffer

The buffer where we store the data

buf - Variable in class jj2000.j2k.entropy.decoder.ByteInputBuffer

The byte array containing the data

buf - Variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The buffer where the data is stored

buf - Variable in class jj2000.j2k.image.input.ImgReaderPGM

The line buffer.

buf - Variable in class jj2000.j2k.util.ISRandomAccessIO

buf - Variable in class loci.formats.codec.BitWriter

Deprecated.

Buffer storing all bits written thus far.

BUF_DEF_LEN - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The default initial buffer size

BUF_INC - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The buffer increase size

buffer - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

buffer - Variable in class loci.common.ByteArrayHandle

Backing ByteBuffer.

buffer - Variable in class loci.common.NIOFileHandle

The buffer itself.

buffer(long, int) - Method in class loci.common.NIOFileHandle

Aligns the NIO buffer, maps it if it is not currently and sets all relevant positions and offsets.

buffer_ - Variable in class com.sun.media.imageioimpl.common.BitFile

BUFFER_SIZE - Static variable in class loci.formats.in.NativeND2Reader

BUFFER_SIZE - Static variable in class loci.formats.in.ZeissCZIReader

BufferedImageReader - Class in loci.formats.gui

A reader wrapper for reading image planes as BufferedImage objects.

BufferedImageReader() - Constructor for class loci.formats.gui.BufferedImageReader

Constructs a BufferedImageReader around a new image reader.

BufferedImageReader(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageReader

Constructs a BufferedImageReader with the given reader.

BufferedImageSource - Class in loci.formats.gui

Retrieves BufferedImages from a data source using Bio-Formats.

BufferedImageSource(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageSource

BufferedImageWriter - Class in loci.formats.gui

A writer wrapper for writing image planes from BufferedImage objects.

BufferedImageWriter() - Constructor for class loci.formats.gui.BufferedImageWriter

Constructs a BufferedImageWriter around a new image writer.

BufferedImageWriter(IFormatWriter) - Constructor for class loci.formats.gui.BufferedImageWriter

Constructs a BufferedImageWriter with the given writer.

BufferedRandomAccessFile - Class in jj2000.j2k.io

This class defines a Buffered Random Access File.

BufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

BufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

BufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

BufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile

Constructor.

bufferSize - Variable in class loci.common.NIOFileHandle

The buffer size.

bufferStartPosition - Variable in class loci.common.NIOFileHandle

The absolute position of the start of the buffer.

bufSize(int, int, int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the maximum size of the buffer (in bytes) required to hold a JPEG image with the given width and height, and level of chrominance subsampling.

bufSizeYUV(int, int, int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the size of the buffer (in bytes) required to hold a YUV planar image with the given width, height, and level of chrominance subsampling.

bugaddr - Static variable in class jj2000.j2k.JJ2KInfo

The bug reporting e-mail address

BUILD - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default 0x10d3

BUILD_YEAR - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default 0x07CC (1996)

buildAndWriteLayers() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

This method builds all the bit stream layers and then writes them to the output bit stream.

buildCondition(Object, int, Object) - Method in class mdbtools.dbengine.Tests

buildDB() - Method in class mdbtools.dbengine.Tests

buildEquation(Object, int, Object) - Method in class mdbtools.dbengine.Tests

BUILDER - Static variable in class loci.formats.meta.OriginalMetadataAnnotation

builder - Variable in class ome.xml.meta.AbstractOMEXMLMetadata

buildExtensions() - Method in class loci.plugins.macro.MacroFunctions

Builds the list of extensions, using reflection, from public methods of this class.

buildFileChooser(IFormatHandler) - Static method in class loci.formats.gui.GUITools

Constructs a file chooser for the given file format handler.

buildFileChooser(IFormatHandler, boolean) - Static method in class loci.formats.gui.GUITools

Constructs a file chooser for the given file format handler.

buildFileChooser(FileFilter[]) - Static method in class loci.formats.gui.GUITools

Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter.

buildFileChooser(FileFilter[], boolean) - Static method in class loci.formats.gui.GUITools

Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter, if one is not already specified.

buildFileFilters(IFormatHandler) - Static method in class loci.formats.gui.GUITools

Constructs a list of file filters for the given file format handler.

buildFiles(String, int, List<String>) - Method in class loci.formats.FilePattern

Recursive method for building filenames for the file listing.

buildFontCharactersProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails

buildFontHeightProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails

buildFontWidthsProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails

buildFunction(Function, Object) - Method in class mdbtools.dbengine.Tests

buildFunction(Aggregate, Object) - Method in class mdbtools.dbengine.Tests

buildJoin(Object, int, Table, Equation) - Method in class mdbtools.dbengine.Tests

buildPalette() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

buildSelect(Object[], Object[], Object, FQColumn[], Object[][]) - Method in class mdbtools.dbengine.Tests

buildTestCases() - Method in class mdbtools.dbengine.Tests

buildTIFFList(int) - Method in class loci.formats.in.MicromanagerReader

buildTIFFList(int, String) - Method in class loci.formats.in.MicromanagerReader

Populate the list of TIFF files using the given file name as a pattern.

buildTime - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The wall time for the building of layers.

buildTypes() - Static method in class loci.formats.in.DicomReader

Assemble the data dictionary.

BUILTIN_AUTO_ACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_AUTO_CLOSE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_AUTO_DEACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_AUTO_OPEN - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_CONSOLIDATE_AREA - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_CRITERIA - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_DATA_FORM - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_DATABASE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_PRINT_AREA - Static variable in class loci.poi.hssf.record.NameRecord

BUILTIN_PRINT_TITLE - Static variable in class loci.poi.hssf.record.NameRecord

BUILTIN_RECORDER - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

BUILTIN_SHEET_TITLE - Static variable in class loci.poi.hssf.record.NameRecord

Included for completeness sake, not implemented

builtinFormats - Static variable in class loci.poi.hssf.usermodel.HSSFDataFormat

BurleighReader - Class in loci.formats.in

BurleighReader is the file format reader for Burleigh .img files.

BurleighReader() - Constructor for class loci.formats.in.BurleighReader

Constructs a new Burleigh reader.

bypass - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Uses the lazy coding mode with the entropy coder.

BYTE - Static variable in class loci.formats.in.GatanReader

BYTE_COUNT_OFFSET - Static variable in class loci.formats.out.QTWriter

Seek to this offset to update the total number of pixel bytes.

BYTE_ORDER_ASSERTION - Static variable in class loci.poi.hpsf.PropertySet

The "byteOrder" field must equal this value.

BYTE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

ByteArrayHandle - Class in loci.common

A wrapper for a byte array that implements the IRandomAccess interface.

ByteArrayHandle(byte[]) - Constructor for class loci.common.ByteArrayHandle

Creates a random access byte stream to read from, and write to, the bytes specified by the byte[] argument.

ByteArrayHandle(ByteBuffer) - Constructor for class loci.common.ByteArrayHandle

ByteArrayHandle(int) - Constructor for class loci.common.ByteArrayHandle

Creates a random access byte stream to read from, and write to.

ByteArrayHandle() - Constructor for class loci.common.ByteArrayHandle

Creates a random access byte stream to write to a byte array.

byteArraySet(byte[], byte) - Static method in class jj2000.j2k.util.ArrayUtil

Reinitializes a byte array to the given value in an optimized way.

ByteArraySource - Class in loci.formats.cache

Retrieves byte arrays from a data source (e.g., a file) using Bio-Formats.

ByteArraySource(IFormatReader) - Constructor for class loci.formats.cache.ByteArraySource

Constructs a byte array source from the given Bio-Formats reader.

ByteArraySource(String) - Constructor for class loci.formats.cache.ByteArraySource

Constructs a byte array source that draws from the given file.

bytebuf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

byteBuffer - Variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream

A ByteBuffer used for writing to the channel.

byteBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Buffer of bytes containing the part of the file that is currently being accessed

byteBuffer - Variable in class loci.formats.codec.BitBuffer

Deprecated.

byteBufferChanged - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Boolean keeping track of whether the byte buffer has been changed since it was read.

byteBufferProvider - Variable in class loci.common.NIOFileHandle

Provider class for NIO byte buffers, allocated or memory mapped.

byteCount - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The number of bytes of data from the source ImageInputStream to be decompressed.

ByteField - Class in loci.poi.util

representation of a byte (8-bit) field at a fixed location within a byte array

ByteField(int) - Constructor for class loci.poi.util.ByteField

construct the ByteField with its offset into its containing byte array and a default value of 0

ByteField(int, byte) - Constructor for class loci.poi.util.ByteField

construct the ByteField with its offset into its containing byte array and initialize its value

ByteField(int, byte[]) - Constructor for class loci.poi.util.ByteField

Construct the ByteField with its offset into its containing byte array and initialize its value from its byte array

ByteField(int, byte, byte[]) - Constructor for class loci.poi.util.ByteField

construct the ByteField with its offset into its containing byte array, initialize its value, and write its value to its byte array

byteIn() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

This function gets one byte of compressed bits from the in-stream.

ByteInputBuffer - Class in jj2000.j2k.entropy.decoder

This class provides a byte input facility from byte buffers.

ByteInputBuffer(byte[]) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer

Creates a new byte array input stream that reads data from the specified byte array.

ByteInputBuffer(byte[], int, int) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer

Creates a new byte array input stream that reads data from the specified byte array.

byteOffset - Variable in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

byteOrder - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's byte order.

byteOrder - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

byteOrder - Variable in class org.libjpegturbo.turbojpeg.TJDecompressor

byteOrdering - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

byteOut() - Method in class jj2000.j2k.entropy.encoder.MQCoder

This function puts one byte of compressed bits in the out out stream.

ByteOutputBuffer - Class in jj2000.j2k.entropy.encoder

This class provides a buffering output stream similar to ByteArrayOutputStream, with some additional methods.

ByteOutputBuffer() - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Creates a new byte array output stream.

ByteOutputBuffer(int) - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Creates a new byte array output stream, with a buffer capacity of the specified size, in bytes.

bytePointer - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

bytes - Variable in class loci.formats.in.OBFReader.Frame

bytes - Variable in class loci.formats.tiff.TiffSaver

Output bytes.

bytes - Variable in class loci.poi.hpsf.ClassID

The bytes making out the class ID in correct order, i.e.

BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants

The number of bytes in each IFD entry.

BYTES_PER_PIXEL - Static variable in class ome.specification.XMLMockObjects

The number of bytes per pixels.

bytesFromReader(IFormatReader) - Method in class loci.formats.Memoizer.RandomAccessDeser

bytesPerAxis - Variable in class loci.formats.in.LeicaHandler

bytesPerElement - Variable in enum loci.formats.tiff.IFDType

Number of bytes per element of this type.

bytesPerLine - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

bytesPerLine - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

bytesPerLine - Variable in class loci.formats.in.PCXReader

Number of bytes per scan line - may be different than image width.

bytesPerPixel - Variable in class loci.formats.in.AmiraReader.ASCII

bytesPerPixel - Variable in class loci.formats.in.GatanReader

bytesPerPixel - Variable in class loci.formats.in.OpenlabRawReader

Number of bytes per pixel.

bytesPerPixel - Variable in class loci.formats.out.AVIWriter

bytesPerPixel - Variable in class loci.tests.testng.Jpeg2000GrindTest

bytesPerPlane - Variable in class loci.formats.in.AVIReader

bytesToDouble(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a double.

bytesToDouble(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

bytesToDouble(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a double.

bytesToDouble(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a double.

bytesToDouble(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

bytesToDouble(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a double.

bytesToFloat(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a float.

bytesToFloat(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

bytesToFloat(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to a float.

bytesToFloat(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond a given offset to a float.

bytesToFloat(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

bytesToFloat(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to a float.

bytesToHex(byte[]) - Static method in class loci.common.DataTools

Translates the given byte array into a String of hexadecimal digits.

bytesToInt(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to an int.

bytesToInt(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

bytesToInt(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to an int.

bytesToInt(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to an int.

bytesToInt(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

bytesToInt(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 4 bytes of a byte array to an int.

bytesToLong(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a long.

bytesToLong(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

bytesToLong(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a long.

bytesToLong(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a long.

bytesToLong(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

bytesToLong(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 8 bytes of a byte array to a long.

bytesToShort(byte[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array beyond the given offset to a short.

bytesToShort(byte[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array beyond the given offset to a short.

bytesToShort(byte[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array to a short.

bytesToShort(short[], int, int, boolean) - Static method in class loci.common.DataTools

Translates up to the first len bytes of a byte array byond the given offset to a short.

bytesToShort(short[], int, boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array byond the given offset to a short.

bytesToShort(short[], boolean) - Static method in class loci.common.DataTools

Translates up to the first 2 bytes of a byte array to a short.

byteTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

ByteToBitInput - Class in jj2000.j2k.entropy.decoder

This class provides an adapter to perform bit based input on byte based output obejcts that inherit from a 'ByteInputBuffer' class.

ByteToBitInput(ByteInputBuffer) - Constructor for class jj2000.j2k.entropy.decoder.ByteToBitInput

Instantiates a new 'ByteToBitInput' object that uses 'in' as the underlying byte based input.

byteValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a byte.

ByteVector - Class in loci.formats.codec

A growable array of bytes.

ByteVector() - Constructor for class loci.formats.codec.ByteVector

ByteVector(int) - Constructor for class loci.formats.codec.ByteVector

ByteVector(byte[]) - Constructor for class loci.formats.codec.ByteVector

BZip2Handle - Class in loci.common

StreamHandle implementation for reading from BZip2-compressed files or byte arrays.

BZip2Handle(String) - Constructor for class loci.common.BZip2Handle

Construct a new BZip2Handle corresponding to the given file.

C

c - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The current bit code

c - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The current bit code

c - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The component on which to compress

C - Static variable in class loci.formats.AxisGuesser

Prefix endings indicating channel dimension.

c - Variable in class loci.formats.in.LeicaSCNReader.Dimension

c - Variable in class loci.formats.in.MicromanagerReader.Index

c - Variable in class loci.formats.in.OperettaReader.Plane

c - Variable in class loci.formats.tools.AmiraParameters

c - Variable in class loci.tests.testng.Jpeg2000GrindTest.TileRunnable

C01_MAGIC_BYTES - Static variable in class loci.formats.in.CellomicsReader

C_AXIS - Static variable in class loci.formats.AxisGuesser

Axis type for channels.

C_KEY - Static variable in class loci.formats.in.LiFlimReader

C_STRING - Static variable in class loci.formats.in.SDTInfo

cache - Static variable in class loci.common.CaseInsensitiveLocation

cache - Variable in class loci.common.CaseInsensitiveLocation.Cache

Mapping of directory names to directory content, the content being a mapping of case insensitive name to case sensitive (real) name on disc.

Cache - Class in loci.formats.cache

Cache provides a means of managing subsets of large collections of image planes in memory.

Cache(ICacheStrategy, ICacheSource, boolean) - Constructor for class loci.formats.cache.Cache

Constructs an object cache with the given cache strategy and source.

cache - Variable in class loci.formats.cache.Cache

Master array containing cached objects.

cache - Variable in class loci.formats.cache.CacheUpdater

cache - Variable in class loci.formats.gui.CacheComponent

The cache that this component controls.

cache - Variable in class loci.formats.gui.CacheIndicator

cache - Variable in class loci.plugins.util.BFVirtualStack

CacheComponent - Class in loci.formats.gui

GUI component for managing a cache.

CacheComponent(Cache, String[]) - Constructor for class loci.formats.gui.CacheComponent

Creates a cache GUI component.

CacheComponent(Cache, String[], String) - Constructor for class loci.formats.gui.CacheComponent

Creates a cache GUI component with the ability to change between the various source types (mainly for debugging purposes).

CacheConsole - Class in loci.formats.tools

CacheConsole provides an interactive interpreter for testing the Bio-Formats caching implementation.

CacheConsole() - Constructor for class loci.formats.tools.CacheConsole

cachedDecoders - Variable in class loci.formats.codec.HuffmanCodec

cacheDirectoryListings(boolean) - Static method in class loci.common.Location

Turn cacheing of directory listings on or off.

cachedTileBuffer - Variable in class loci.formats.in.MIASReader

Cached tile buffer to avoid re-allocations when reading tiles.

cachedTileBuffer - Variable in class loci.formats.tiff.TiffParser

Cached tile buffer to avoid re-allocations when reading tiles.

CacheEvent - Class in loci.formats.cache

A event indicating a cache update.

CacheEvent(Object, int) - Constructor for class loci.formats.cache.CacheEvent

Constructs a cache event.

CacheEvent(Object, int, int) - Constructor for class loci.formats.cache.CacheEvent

Constructs a cache event.

CacheException - Exception in loci.formats.cache

CacheException is the exception thrown when something goes wrong performing a cache operation.

CacheException() - Constructor for exception loci.formats.cache.CacheException

CacheException(String) - Constructor for exception loci.formats.cache.CacheException

CacheException(String, Throwable) - Constructor for exception loci.formats.cache.CacheException

CacheException(Throwable) - Constructor for exception loci.formats.cache.CacheException

CacheIndicator - Class in loci.formats.gui

Indicator GUI component showing which planes are currently in the cache for a given dimensional axis at a particular dimensional position.

CacheIndicator(Cache, int) - Constructor for class loci.formats.gui.CacheIndicator

Creates a new cache indicator for the given cache.

CacheIndicator(Cache, int, Component, int, int) - Constructor for class loci.formats.gui.CacheIndicator

Creates a new cache indicator.

CacheListener - Interface in loci.formats.cache

A listener for cache updates.

cacheListings - Static variable in class loci.common.Location

cacheNanos - Static variable in class loci.common.Location

CacheReporter - Interface in loci.formats.cache

Interface for components capable of reporting cache updates.

CacheSource - Class in loci.formats.cache

Superclass of cache sources that retrieve image planes from a data source (e.g., a file) using Bio-Formats.

CacheSource(IFormatReader) - Constructor for class loci.formats.cache.CacheSource

Constructs a cache source from the given Bio-Formats reader.

CacheSource(String) - Constructor for class loci.formats.cache.CacheSource

Constructs a cache source that draws from the given file.

CacheStrategy - Class in loci.formats.cache

Superclass of cache strategies.

CacheStrategy(int[]) - Constructor for class loci.formats.cache.CacheStrategy

Constructs a cache strategy.

cacheUpdated(CacheEvent) - Method in interface loci.formats.cache.CacheListener

Called when cache is updated.

cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheComponent

Updates GUI to match latest cache state.

cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheIndicator

CacheUpdater - Class in loci.formats.cache

Thread responsible for updating the cache (loading and dropping planes) in the background.

CacheUpdater(Cache) - Constructor for class loci.formats.cache.CacheUpdater

calcBasisWaveForms(float[][]) - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Calculates the basis waveform of the first leaf for which the L2-norm has not been calculated yet.

CalcCountRecord - Class in loci.poi.hssf.record

Title: Calc Count Record Description: Specifies the maximum times the gui should perform a formula recalculation.

CalcCountRecord() - Constructor for class loci.poi.hssf.record.CalcCountRecord

CalcCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcCountRecord

Constructs a CalcCountRecord and sets its fields appropriately

calcExtSSTRecordSize() - Method in class loci.poi.hssf.record.SSTRecord

Calculates the size in bytes of the EXTSST record as it would be if the record was serialized.

calcL2Norms() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Calculates the L2-norm of the sythesis waveforms of every leaf in the tree.

calcMaxMagBits(J2KImageWriteParamJava) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Calculates the maximum amount of magnitude bits for each tile-component, and stores it in the 'maxMagBits' array.

calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.

calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.

CalcModeRecord - Class in loci.poi.hssf.record

Title: Calc Mode Record

CalcModeRecord() - Constructor for class loci.poi.hssf.record.CalcModeRecord

CalcModeRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcModeRecord

Constructs a CalcModeRecord and sets its fields appropriately

calcOnLoad - Variable in class loci.poi.hssf.record.FormulaRecord

calcPhotons - Variable in class loci.formats.in.SDTInfo

No of photons.

calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Calculates the parameters of the SubbandAn objects that depend on the Quantizer.

calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Calculates the parameters of the SubbandAn objects that depend on the Quantizer.

calcSize() - Method in class loci.poi.hpsf.MutableSection

Calculates the section's size.

calcSize(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

Calculate the storage size of a set of SmallDocumentBlocks

calcSkipMSBP(CBlkWTData, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Calculates the number of magnitude bit-planes that are to be skipped, because they are non-significant.

calculateDimensions() - Method in class loci.formats.in.ZeissCZIReader

calculateIFDOffset() - Method in class ome.jxr.parser.FileParser

calculateStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock

Calculate how many BATBlocks are needed to hold a specified number of BAT entries.

calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock

Calculate how many XBATBlocks are needed to hold a specified number of BAT entries.

calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.HeaderBlockWriter

For a given number of BAT blocks, calculate how many XBAT blocks will be needed

calibratedMagnification - Variable in class ome.xml.model.Objective

CALIBRATION - Static variable in class loci.formats.in.OpenlabReader

calibrationTable - Variable in class loci.plugins.util.BFVirtualStack

calibrationUnit - Variable in class loci.formats.in.TiffReader

Calibrator - Class in loci.plugins.in

Logic for calibrating images.

Calibrator(ImportProcess) - Constructor for class loci.plugins.in.Calibrator

CALLOUT__CALLOUTACCENTBAR - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTANGLE - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTDROPSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTDROPTYPE - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTLENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTMINUSX - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTMINUSY - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTTEXTBORDER - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__CALLOUTTYPE - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__DROPAUTO - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__ISCALLOUT - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__LENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties

CALLOUT__XYCALLOUTGAP - Static variable in class loci.poi.ddf.EscherProperties

CAMERA_GAIN - Static variable in class loci.formats.in.CellSensReader

CAMERA_GAMMA - Static variable in class loci.formats.in.CellSensReader

CAMERA_OFFSET - Static variable in class loci.formats.in.CellSensReader

CAMERA_SERIAL_SETTING - Static variable in class loci.formats.in.FluoviewReader

cameraIDs - Variable in class loci.formats.in.FlexReader

cameraMode - Variable in class loci.formats.in.MicromanagerReader.Position

cameraModel - Variable in class loci.formats.in.ND2Handler

cameraName - Variable in class loci.formats.in.SimplePCITiffReader

cameraName - Variable in class loci.formats.in.SISReader

cameraRef - Variable in class loci.formats.in.MicromanagerReader.Position

cameraRefs - Variable in class loci.formats.in.FlexReader

cameraType - Variable in class loci.formats.in.SimplePCITiffReader

CAN_GROUP - Static variable in class loci.formats.FormatTools

CAN_GROUP - Static variable in interface loci.formats.IFormatReader

canAdjustDimensions - Variable in class loci.formats.in.ND2Handler

cancel - Variable in class loci.plugins.in.ImportProcess

Whether the process has been canceled.

cancel() - Method in class loci.plugins.in.ImportProcess

Cancels the import process.

canceled - Variable in class loci.plugins.LociImporter

Flag indicating whether last operation was canceled.

canceled - Variable in class loci.plugins.Slicer

Flag indicating whether last operation was canceled.

canceled - Variable in class loci.plugins.Updater

Flag indicating whether last operation was canceled.

canChangePattern() - Method in class loci.formats.FileStitcher

canCloseReader - Variable in class loci.formats.gui.ImageViewer

canCreatePalette(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Returns true if PaletteBuilder is able to create palette for given image type.

canCreatePalette(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Returns true if PaletteBuilder is able to create palette for given rendered image.

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

canDoQT() - Method in class loci.formats.gui.LegacyQTTools

Whether QuickTime is available to this JVM.

canDoStacks() - Method in class loci.formats.FormatWriter

canDoStacks() - Method in interface loci.formats.IFormatWriter

Reports whether the writer can save multiple images to a single file.

canDoStacks() - Method in class loci.formats.ImageWriter

canDoStacks() - Method in class loci.formats.out.APNGWriter

canDoStacks() - Method in class loci.formats.out.AVIWriter

canDoStacks() - Method in class loci.formats.out.CellH5Writer

canDoStacks() - Method in class loci.formats.out.ICSWriter

canDoStacks() - Method in class loci.formats.out.JavaWriter

canDoStacks() - Method in class loci.formats.out.JPEG2000Writer

Overridden to indicate that stacks are not supported.

canDoStacks() - Method in class loci.formats.out.LegacyQTWriter

canDoStacks() - Method in class loci.formats.out.OMEXMLWriter

canDoStacks() - Method in class loci.formats.out.QTWriter

canDoStacks() - Method in class loci.formats.out.TiffWriter

canDoStacks() - Method in class loci.formats.out.V3DrawWriter

canDoStacks() - Method in class loci.formats.out.WlzWriter

canDoStacks() - Method in class loci.formats.WriterWrapper

canDoUpgradeCheck() - Method in class loci.formats.UpgradeChecker

Return whether or not we are ever allowed to perform an upgrade check.

canEncodeImage(ImageWriter, ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Checks that the provided ImageWriter can encode the provided ImageTypeSpecifier or not.

canEncodeImage(ImageWriter, ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Checks that the provided ImageWriter can encode the provided ColorModel and SampleModel.

canEncodeImage(int, ColorModel, SampleModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

canEncodeImage(int, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

canFitInMemory(long) - Static method in class loci.tests.testng.TestTools

Returns true if a byte buffer of the given size will fit in memory.

canImport(JComponent, DataFlavor[]) - Method in class loci.plugins.shortcut.ShortcutTransferHandler

canInsertEmpty(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canInsertImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canLookForND - Variable in class loci.formats.in.MetamorphReader

canMerge() - Method in class loci.formats.ChannelMerger

Determines whether the channels in the file can be merged.

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat

canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat

CANNOT_GROUP - Static variable in class loci.formats.FormatTools

CANNOT_GROUP - Static variable in interface loci.formats.IFormatReader

CANON_TAG - Static variable in class loci.formats.in.DNGReader

CanonRawReader - Class in loci.formats.in

CanonRawReader is the file format reader for Canon RAW files.

CanonRawReader() - Constructor for class loci.formats.in.CanonRawReader

Constructs a new Canon RAW reader.

canParse - Variable in class loci.formats.in.LeicaHandler

canRead() - Method in class loci.common.Location

If the underlying location is a URL, this method will return true if the URL exists.

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

canReplacePixels(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canUseBankDataDirectly(WritableRaster, int, Class<? extends DataBuffer>) - Static method in class loci.formats.gui.AWTImageTools

Whether we can return the data buffer's bank data without performing any copy or conversion operations.

canUsePrevious - Variable in class loci.formats.in.NativeQTReader

Flag indicating whether we can safely use prevPixels.

CANVAS_COLOR_1 - Static variable in class loci.formats.in.CellSensReader

CANVAS_COLOR_2 - Static variable in class loci.formats.in.CellSensReader

canWrite() - Method in class loci.common.Location

If the underlying location is a URL, this method will always return false.

canWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

CAPTURE_EDITOR_DATA - Static variable in class loci.formats.in.NikonReader

CAPTURE_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CaseInsensitiveLocation - Class in loci.common

Case insensitive variant of Location.

CaseInsensitiveLocation(String) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(Location) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(File) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(String, String) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation(CaseInsensitiveLocation, String) - Constructor for class loci.common.CaseInsensitiveLocation

CaseInsensitiveLocation.Cache - Class in loci.common

Caching for CaseInsensitiveLocation.

CaseInsensitiveLocation.Cache() - Constructor for class loci.common.CaseInsensitiveLocation.Cache

The constructor.

cast(Class<?>) - Method in class loci.formats.ClassList

Cast the given class to something that extends the base class.

cat(byte[][]) - Static method in class loci.poi.hpsf.Util

Concatenates the contents of several byte arrays into a single one.

cat - Variable in class loci.poi.util.SystemOutLogger

Catalog - Class in mdbtools.libmdb

Catalog() - Constructor for class mdbtools.libmdb.Catalog

catalog - Variable in class mdbtools.libmdb.MdbHandle

category - Variable in class loci.formats.in.BaseZeissReader.Tag

category - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling

category - Variable in class loci.formats.in.ZeissTIFFHandler.Tag

CATEGORY_DATA_TYPE_ALL_TEXT_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

CATEGORY_DATA_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_SHOW_LABELS_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

CATEGORY_DATA_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord

CATEGORY_DATA_TYPE_VALUE_AND_PERCENTAGE_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

CategorySeriesAxisRecord - Class in loci.poi.hssf.record

This record refers to a category or series axis and is used to specify label/tickmark frequency.

CategorySeriesAxisRecord() - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord

CategorySeriesAxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord

Constructs a CategorySeriesAxis record and sets its fields appropriately.

causalCXInfo - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Uses vertically stripe causal context formation.

cb0x - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The horizontal code-block partition origin

cb0x - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The horizontal coordinate of the code-block partition origin on the reference grid

cb0y - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The vertical code-block partition origin

cb0y - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The vertical coordinate of the code-block partition on the reference grid

CBAR - Static variable in class ome.units.UNITS

cBegin - Variable in class loci.plugins.in.ImporterOptions

cbI - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Array containing info.

cbLength - Variable in class jj2000.j2k.codestream.reader.PktInfo

The length of the code-block in this packet (in bytes)

cblk - Variable in class jj2000.j2k.codestream.PrecInfo

Code-blocks belonging to this precinct in each subbands of the resolution level

CBlkCoordInfo - Class in jj2000.j2k.codestream

This class is used to store the coordinates of code-blocks.

CBlkCoordInfo() - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo

Constructor.

CBlkCoordInfo(int, int) - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo

Constructor.

CBlkInfo - Class in jj2000.j2k.codestream.reader

This class contains location of code-blocks' piece of codewords (there is one piece per layer) and some other information.

CBlkInfo(int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.reader.CBlkInfo

Constructs a new instance with specified number of layers and code-block coordinates.

CBlkQuantDataSrcDec - Interface in jj2000.j2k.quantization.dequantizer

This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis, fro the decoder side.

CBlkQuantDataSrcEnc - Interface in jj2000.j2k.quantization.quantizer

This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis.

CBlkRateDistStats - Class in jj2000.j2k.entropy.encoder

This class stores coded (compressed) code-blocks with their associated rate-distortion statistics.

CBlkRateDistStats() - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Creates a new CBlkRateDistStats object without allocating any space for 'truncRates', 'truncSlopes', 'truncDists' and 'truncIdxs' or 'data'.

CBlkRateDistStats(int, int, int, byte[], int[], double[], boolean[], int, boolean) - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Creates a new CBlkRateDistStats object and initializes the valid truncation points, their rates and their slopes, from the 'rates' and 'dist' arrays.

cblks - Variable in class jj2000.j2k.codestream.reader.PktDecoder

List of code-blocks found in last read packet head (one list per subband)

cblks - Variable in class jj2000.j2k.decoder.DecoderSpecs

Code-blocks sizes specification

cblks - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

5D Array containing all the coded code-blocks: 1st index: tile index 2nd index: component index 3rd index: resolution level index 4th index: subband index 5th index: code-block index

cblks - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The code-block size specifications

cblks - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The code-block size specifications

CBlkSizeSpec - Class in jj2000.j2k.entropy

This class extends ModuleSpec class for code-blocks sizes holding purposes.

CBlkSizeSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec

Creates a new CBlkSizeSpec object for the specified number of tiles and components.

CBlkSizeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec

Creates a new CBlkSizeSpec object for the specified number of tiles and components and the parameters instance.

cblkToDecode - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

The total number of code-blocks to decode

CBlkWTData - Class in jj2000.j2k.wavelet.analysis

This is a generic abstract class to store a code-block of wavelet data, be it quantized or not.

CBlkWTData() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTData

CBlkWTDataFloat - Class in jj2000.j2k.wavelet.analysis

This is an implementation of the 'CBlkWTData' abstract class for 32 bit floating point data (float).

CBlkWTDataFloat() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

CBlkWTDataInt - Class in jj2000.j2k.wavelet.analysis

This is an implementation of the 'CBlkWTData' abstract class for signed 32 bit integer data.

CBlkWTDataInt() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

CBlkWTDataSrc - Interface in jj2000.j2k.wavelet.analysis

This abstract class defines methods to transfer wavelet data in a code-block by code-block basis.

CBlkWTDataSrcDec - Interface in jj2000.j2k.wavelet.synthesis

This abstract class defines methods to transfer wavelet data in a code-block by code-block basis, for the decoder side.

cbOff - Variable in class jj2000.j2k.codestream.reader.PktInfo

The code-block offset in the codestream (for this packet)

CBZip2InputStream - Class in loci.common

An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.

CBZip2InputStream(InputStream) - Constructor for class loci.common.CBZip2InputStream

Constructs a new CBZip2InputStream which decompresses bytes read from the specified stream.

CBZip2InputStream.Data - Class in loci.common

CBZip2InputStream.Data(int) - Constructor for class loci.common.CBZip2InputStream.Data

ccb - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

The object where to store the compressed code-block

CCD_SENSITIVITY - Static variable in class loci.formats.in.CellSensReader

cChoice - Variable in class loci.formats.gui.DataConverter

cChoice - Variable in class loci.plugins.in.SwapDialog

ccoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC

ccom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM

cdata - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

cdata - Variable in class loci.formats.in.ZeissTIFFHandler

cdstreamStart - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

ce - Variable in class jj2000.j2k.entropy.Progression

Component index for the end of a progression.

CELL_LENGTH - Static variable in class loci.formats.tiff.IFD

CELL_TYPE_BLANK - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Blank Cell type (3)

CELL_TYPE_BOOLEAN - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Boolean Cell type (4)

CELL_TYPE_ERROR - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Error Cell type (5)

CELL_TYPE_FORMULA - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Formula Cell type (2)

CELL_TYPE_NUMERIC - Static variable in class loci.poi.hssf.usermodel.HSSFCell

Numeric Cell type (0)

CELL_TYPE_STRING - Static variable in class loci.poi.hssf.usermodel.HSSFCell

String Cell type (1)

CELL_WIDTH - Static variable in class loci.formats.tiff.IFD

CellH5PathsToImageData - Variable in class loci.formats.in.CellH5Reader

CellH5PositionList - Variable in class loci.formats.in.CellH5Reader

CellH5Reader - Class in loci.formats.in

Reader for CellH5 (HDF) files.

CellH5Reader() - Constructor for class loci.formats.in.CellH5Reader

Constructs a new CellH5 HDF reader.

CellH5Reader.CellH5Constants - Class in loci.formats.in

CellH5Reader.CellH5Constants() - Constructor for class loci.formats.in.CellH5Reader.CellH5Constants

CellH5Reader.CellH5Coordinate - Class in loci.formats.in

CellH5Reader.CellH5Coordinate(String, String, String) - Constructor for class loci.formats.in.CellH5Reader.CellH5Coordinate

CellH5Writer - Class in loci.formats.out

CellH5Writer is the file format writer for CellH5 format.

CellH5Writer() - Constructor for class loci.formats.out.CellH5Writer

CellH5Writer(String, String[]) - Constructor for class loci.formats.out.CellH5Writer

cellIterator() - Method in class loci.poi.hssf.usermodel.HSSFRow

cellObjectNames - Variable in class loci.formats.in.CellH5Reader

cellomicsPattern - Variable in class loci.formats.in.CellomicsReader

CellomicsReader - Class in loci.formats.in

Reader for Cellomics C01 files.

CellomicsReader() - Constructor for class loci.formats.in.CellomicsReader

Constructs a new Cellomics reader.

CellReference - Class in loci.poi.hssf.util

CellReference(String) - Constructor for class loci.poi.hssf.util.CellReference

CellReference(int, int) - Constructor for class loci.poi.hssf.util.CellReference

CellReference(int, int, boolean, boolean) - Constructor for class loci.poi.hssf.util.CellReference

cells - Variable in class loci.poi.hssf.model.Sheet

cells - Variable in class loci.poi.hssf.usermodel.HSSFRow

cells - Variable in class loci.poi.hssf.util.AreaReference

CellSensReader - Class in loci.formats.in

CellSensReader is the file format reader for cellSens .vsi files.

CellSensReader() - Constructor for class loci.formats.in.CellSensReader

Constructs a new cellSens reader.

CellSensReader.Pyramid - Class in loci.formats.in

CellSensReader.Pyramid() - Constructor for class loci.formats.in.CellSensReader.Pyramid

CellSensReader.TileCoordinate - Class in loci.formats.in

CellSensReader.TileCoordinate(int) - Constructor for class loci.formats.in.CellSensReader.TileCoordinate

cellType - Variable in class loci.poi.hssf.usermodel.HSSFCell

CellValueRecordInterface - Interface in loci.poi.hssf.record

The cell value record interface is implemented by all classes of type Record that contain cell values.

CellVoyagerReader - Class in loci.formats.in

A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope ( http://www.yokogawa.com/scanner/products/cv1000e.htm).

CellVoyagerReader() - Constructor for class loci.formats.in.CellVoyagerReader

CellVoyagerReader.AreaInfo - Class in loci.formats.in

CellVoyagerReader.AreaInfo() - Constructor for class loci.formats.in.CellVoyagerReader.AreaInfo

CellVoyagerReader.ChannelInfo - Class in loci.formats.in

CellVoyagerReader.ChannelInfo() - Constructor for class loci.formats.in.CellVoyagerReader.ChannelInfo

CellVoyagerReader.FieldInfo - Class in loci.formats.in

CellVoyagerReader.FieldInfo() - Constructor for class loci.formats.in.CellVoyagerReader.FieldInfo

CellVoyagerReader.WellInfo - Class in loci.formats.in

CellVoyagerReader.WellInfo() - Constructor for class loci.formats.in.CellVoyagerReader.WellInfo

CellWorxReader - Class in loci.formats.in

CellWorxReader is the file format reader for CellWorx .pnl files.

CellWorxReader() - Constructor for class loci.formats.in.CellWorxReader

Constructs a new CellWorx reader.

cEnd - Variable in class loci.plugins.in.ImporterOptions

CENTER - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

center - Variable in class loci.poi.hssf.usermodel.HSSFFooter

center - Variable in class loci.poi.hssf.usermodel.HSSFHeader

CENTER_SELECTION - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

CENTERED_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy

centerX - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

centerY - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

CENTI(Unit<T>) - Static method in class ome.units.UNITS

cepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

certain - Variable in class loci.formats.AxisGuesser

Whether the guesser is confident that all axis types are correct.

certain - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane

Certainty flag, for dealing with unspecified NumPlanes.

cf - Variable in class org.libjpegturbo.turbojpeg.TJTransform

Custom filter instance

CF_BITMAP - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Bitmap

CF_DIB - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Device Independent Bitmap

CF_ENHMETAFILE - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Enhanced Windows metafile format

CF_METAFILEPICT - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format - Windows metafile format.

CFA_PATTERN - Static variable in class loci.formats.tiff.IFD

cfaPattern - Variable in class loci.formats.in.DNGReader

cfaPattern - Variable in class loci.formats.in.NikonReader

cfdHF - Variable in class loci.formats.in.SDTInfo

cfdLH - Variable in class loci.formats.in.SDTInfo

cfdLL - Variable in class loci.formats.in.SDTInfo

cfdZC - Variable in class loci.formats.in.SDTInfo

CFG_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

CFG_SUFFIX - Static variable in class loci.formats.in.PrairieReader

cfgFile - Variable in class loci.formats.in.PrairieReader

The associated XML files.

cftab - Variable in class loci.common.CBZip2InputStream.Data

CFTAG_FMTID - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - Format ID

CFTAG_MACINTOSH - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - Macintosh clipboard format

CFTAG_NODATA - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - No Data

CFTAG_WINDOWS - Static variable in class loci.poi.hpsf.Thumbnail

Clipboard Format Tag - Windows clipboard format

CHAINED_LAYERS - Static variable in class loci.formats.in.CellSensReader

chan - Variable in class loci.formats.in.SDTInfo

Routing channel number.

CHANDESC - Static variable in class loci.formats.in.LeicaReader

changedUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets

changeName(String, String) - Method in class loci.poi.poifs.filesystem.DirectoryNode

Change a contained Entry's name

changeName(Property, String) - Method in class loci.poi.poifs.property.DirectoryProperty

Change a Property's name

changeOutputFile(String) - Method in class loci.formats.FormatWriter

changeOutputFile(String) - Method in interface loci.formats.IFormatWriter

Switch the output file for the current dataset.

changeOutputFile(String) - Method in class loci.formats.ImageWriter

changeOutputFile(String) - Method in class loci.formats.WriterWrapper

changingElemSize - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

chanMax - Variable in class loci.formats.MinMaxCalculator

Max values for each channel.

chanMin - Variable in class loci.formats.MinMaxCalculator

Min values for each channel.

channel - Variable in class com.sun.media.imageio.stream.FileChannelImageInputStream

The FileChannel data source.

channel - Variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream

The FileChannel data destination.

channel - Variable in class loci.common.NIOByteBufferProvider

File channel to allocate or map data from.

channel - Variable in class loci.common.NIOFileHandle

The file channel backed by the random access file.

channel - Variable in class loci.common.NIOInputStream

The file channel backed by the random access file.

CHANNEL - Static variable in class loci.formats.FormatTools

Identifies the Channel dimensional type, representing a generic channel dimension.

channel - Variable in class loci.formats.in.LeicaHandler.Detector

channel - Variable in class loci.formats.in.LeicaHandler.MultiBand

channel - Variable in class loci.formats.in.PrairieMetadata.PFile

channel of this <File>.

Channel - Class in ome.xml.model

Channel() - Constructor for class ome.xml.model.Channel

Default constructor.

Channel(Element, OMEModel) - Constructor for class ome.xml.model.Channel

Constructs Channel recursively from an XML DOM tree.

Channel(Channel) - Constructor for class ome.xml.model.Channel

Copy constructor.

CHANNEL_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_AMPLIFIER_GAIN - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_CONTRAST_BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader

CHANNEL_COUNT - Static variable in class loci.tests.testng.Configuration

CHANNEL_COUNT_TAG - Static variable in class loci.formats.in.FlowSightReader

CHANNEL_DEFINITION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CHANNEL_DESCS_TAG - Static variable in class loci.formats.in.FlowSightReader

CHANNEL_DETECTOR_GAIN - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_DIM - Static variable in class loci.formats.in.CellSensReader

CHANNEL_FILTER - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_FILTER_SET - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_GAMMA_CORRECTION - Static variable in class loci.formats.in.CellSensReader

CHANNEL_INFO_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

CHANNEL_NAME - Static variable in class loci.formats.FormatTools

CHANNEL_NAME - Static variable in class loci.formats.in.CellSensReader

CHANNEL_NAME - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_NAME - Static variable in class loci.tests.testng.Configuration

CHANNEL_NAMES_TAG - Static variable in class loci.formats.in.FlowSightReader

CHANNEL_NUM - Static variable in class loci.formats.FormatTools

CHANNEL_OVERFLOW - Static variable in class loci.formats.in.CellSensReader

CHANNEL_PINHOLE_DIAMETER - Static variable in class loci.formats.in.ZeissLSMReader

CHANNEL_PRIORITIES - Static variable in class loci.formats.in.LIFReader

CHANNEL_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

CHANNEL_TAG - Static variable in class loci.formats.in.SlidebookTiffReader

CHANNEL_TRANSPARENCY_VALUE - Static variable in class loci.formats.in.CellSensReader

CHANNEL_VISIBLE - Static variable in class loci.formats.in.CellSensReader

channelColor - Variable in class loci.formats.in.LeicaReader

channelColor - Variable in class loci.formats.in.ZeissLSMReader

channelColors - Variable in class loci.formats.in.BaseZeissReader

channelColors - Variable in class loci.formats.in.NativeND2Reader

ChannelDefinitionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is designed to represent a Channel Definition Box of JPEG JP2 file format.

ChannelDefinitionBox(ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided ColorModel.

ChannelDefinitionBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided content in byte array.

ChannelDefinitionBox(short[], short[], short[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided channel definitions.

ChannelDefinitionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Constructs a ChannelDefinitionBox based on the provided org.w3c.dom.Node.

channelDescs - Variable in class loci.formats.in.FlowSightReader

ChannelFiller - Class in loci.formats

For indexed color data representing true color, factors out the indices, replacing them with the color table values directly.

ChannelFiller() - Constructor for class loci.formats.ChannelFiller

Constructs a ChannelFiller around a new image reader.

ChannelFiller(IFormatReader) - Constructor for class loci.formats.ChannelFiller

Constructs a ChannelFiller with a given reader.

channelFiller - Variable in class loci.plugins.in.ImportProcess

ChannelImageInputStreamSpi - Class in com.sun.media.imageioimpl.stream

ChannelImageInputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi

ChannelImageOutputStreamSpi - Class in com.sun.media.imageioimpl.stream

ChannelImageOutputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi

channelIndices - Variable in class loci.formats.in.BaseZeissReader

channelInfos - Variable in class loci.formats.in.CellVoyagerReader

channelLengths - Variable in class loci.formats.in.ICSReader

The length of each channel axis.

channelLinks - Variable in class ome.xml.model.Annotation

channelMap - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

channelMax - Variable in class loci.formats.in.ImarisHDFReader

ChannelMerger - Class in loci.formats

Logic to automatically merge channels in a file.

ChannelMerger() - Constructor for class loci.formats.ChannelMerger

Constructs a ChannelMerger around a new image reader.

ChannelMerger(IFormatReader) - Constructor for class loci.formats.ChannelMerger

Constructs a ChannelMerger with the given reader.

channelMin - Variable in class loci.formats.in.ImarisHDFReader

channelName - Variable in class loci.formats.in.BaseZeissReader

channelName - Variable in class loci.formats.in.ImarisHDFReader

channelName - Variable in class loci.formats.in.MetamorphHandler

channelName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

channelName - Variable in class loci.formats.in.OperettaReader.Plane

channelName - Variable in class loci.formats.in.PrairieMetadata.PFile

channelName attribute of this <File>.

channelName - Variable in class loci.formats.in.SISReader

channelName - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

channelNames - Variable in class loci.formats.in.BDReader

channelNames - Variable in class loci.formats.in.CellSensReader.Pyramid

channelNames - Variable in class loci.formats.in.FlexReader

channelNames - Variable in class loci.formats.in.FlowSightReader

channelNames - Variable in class loci.formats.in.FluoviewReader

channelNames - Variable in class loci.formats.in.InCellReader

channelNames - Variable in class loci.formats.in.LeicaReader

channelNames - Variable in class loci.formats.in.LIFReader

channelNames - Variable in class loci.formats.in.ND2Handler

channelNames - Variable in class loci.formats.in.ScanrReader

channelNames - Variable in class loci.formats.in.SlidebookTiffReader

channelNames - Variable in class loci.formats.in.VolocityReader.Stack

channelNames - Variable in class loci.formats.in.ZeissLSMReader

channelNumber - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

channelNumber - Variable in class loci.plugins.util.RecordedImageProcessor

channelOrder - Variable in class loci.formats.in.PhotoshopTiffReader

ChannelRef - Class in ome.xml.model

ChannelRef() - Constructor for class ome.xml.model.ChannelRef

Default constructor.

ChannelRef(Element, OMEModel) - Constructor for class ome.xml.model.ChannelRef

Constructs ChannelRef recursively from an XML DOM tree.

ChannelRef(ChannelRef) - Constructor for class ome.xml.model.ChannelRef

Copy constructor.

channels - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

channels - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Channel definitions

channels - Variable in class loci.formats.codec.CodecOptions

Number of channels.

channels - Variable in class loci.formats.in.FV1000Reader

channels - Variable in class loci.formats.in.LeicaHandler

channels - Variable in class loci.formats.in.LiFlimReader

channels - Variable in class loci.formats.in.MicromanagerReader.Position

channels - Variable in class loci.formats.in.PrairieReader

List of active channels.

channels - Variable in class loci.formats.in.SDTInfo

channels - Variable in class loci.formats.in.SDTReader

Number of spectral channels.

channels - Variable in class loci.formats.in.TextReader

List of channel labels.

channels - Variable in class loci.formats.in.ZeissCZIReader

channels - Variable in class loci.formats.in.ZeissTIFFReader

channels - Variable in class ome.xml.model.FilterSet

channels - Variable in class ome.xml.model.Pixels

ChannelSeparator - Class in loci.formats

Logic to automatically separate the channels in a file.

ChannelSeparator() - Constructor for class loci.formats.ChannelSeparator

Constructs a ChannelSeparator around a new image reader.

ChannelSeparator(IFormatReader) - Constructor for class loci.formats.ChannelSeparator

Constructs a ChannelSeparator with the given reader.

channelSeparator - Variable in class loci.plugins.in.ImportProcess

channelsPerTimepoint - Variable in class loci.formats.in.InCellReader

channelTypes - Variable in class loci.formats.in.ICSReader

The type of each channel axis.

channelWavelengths - Variable in class loci.formats.in.CellSensReader.Pyramid

chanStore - Variable in class loci.formats.in.SDTReader

CHAR - Static variable in class loci.formats.in.CellSensReader

CHAR - Static variable in class loci.formats.in.GatanReader

character - Variable in class loci.poi.hssf.record.UnicodeString.FormatRun

characterCellHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

characterCellWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

characters(char[], int, int) - Method in class loci.common.xml.MetadataHandler

characters(char[], int, int) - Method in class loci.formats.in.AFIReader.AFIHandler

characters(char[], int, int) - Method in class loci.formats.in.BioRadSCNReader.SCNHandler

characters(char[], int, int) - Method in class loci.formats.in.FEITiffReader.FEIHandler

characters(char[], int, int) - Method in class loci.formats.in.FlexReader.FlexHandler

characters(char[], int, int) - Method in class loci.formats.in.ImaconReader.ImaconHandler

characters(char[], int, int) - Method in class loci.formats.in.InCellReader.InCellHandler

characters(char[], int, int) - Method in class loci.formats.in.IvisionReader.IvisionHandler

characters(char[], int, int) - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

characters(char[], int, int) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler

characters(char[], int, int) - Method in class loci.formats.in.OperettaReader.OperettaHandler

characters(char[], int, int) - Method in class loci.formats.in.ScanrReader.ScanrHandler

characters(char[], int, int) - Method in class loci.formats.in.ZeissTIFFHandler

characters(char[], int, int) - Method in class loci.formats.out.OMEXMLWriter.OMEHandler

charData - Variable in class loci.formats.in.FlexReader.FlexHandler

CHARS - Static variable in class loci.formats.tools.AsciiImage

charset - Variable in class loci.formats.in.BaseZeissReader.Shape

ChartFormatRecord - Class in loci.poi.hssf.record

Class ChartFormatRecord

ChartFormatRecord() - Constructor for class loci.poi.hssf.record.ChartFormatRecord

ChartFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartFormatRecord

Constructs a ChartFormatRecord record and sets its fields appropriately.

ChartRecord - Class in loci.poi.hssf.record

The chart record is used to define the location and size of a chart.

ChartRecord() - Constructor for class loci.poi.hssf.record.ChartRecord

ChartRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartRecord

Constructs a Chart record and sets its fields appropriately.

chartTypeManuallyFormatted - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

charWidths - Variable in class loci.poi.hssf.usermodel.FontDetails

CHECK - Static variable in class loci.formats.in.ZeissLMSReader

check(int) - Method in class loci.poi.util.CommonsLogger

Check if a logger is enabled to log at the specified level

check(int) - Method in class loci.poi.util.NullLogger

Check if a logger is enabled to log at the specified level

check(int) - Method in class loci.poi.util.POILogger

Check if a logger is enabled to log at the specified level

check(int) - Method in class loci.poi.util.SystemOutLogger

Check if a logger is enabled to log at the specified level

checkBounds(int) - Method in class loci.poi.hssf.usermodel.HSSFCell

checkBufferSize(IFormatReader, int) - Static method in class loci.formats.FormatTools

checkBufferSize(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools

Checks that the given buffer size is large enough to hold a w * h image as returned by the given reader.

checkBytePadding() - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput

Checks for past errors in the decoding process by verifying the byte padding with an alternating sequence of 0's and 1's.

checkCells() - Method in class loci.poi.hssf.model.Sheet

checkClass(String) - Static method in class loci.plugins.util.LibraryChecker

Checks whether the given class is available.

checkClassDependency(Class<? extends Object>) - Method in class loci.common.services.AbstractService

Checks a given class dependency at runtime to ensure that a given class will be available.

checkClassDependency(Class<? extends Object>) - Method in class loci.formats.services.WlzServiceImpl

checkCommentImageJ(String) - Method in class loci.formats.in.TiffReader

checkCommentMetamorph(String) - Method in class loci.formats.in.TiffReader

checkComplexData(byte[]) - Static method in class loci.poi.ddf.EscherArrayProperty

checkDefaultBackgroundFills() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

Checks if the background and foreground fills are set correctly when one or the other is set to the default color.

checkDimsLoc(Record, int) - Method in class loci.poi.hssf.model.Sheet

in the event the record is a dimensions record, resets both the loc index and dimsloc index

checkElement(Element, String) - Method in class loci.formats.in.PrairieMetadata

Checks that the given element has the specified name.

checkEndOfPassFF(byte[], int[], boolean[], int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Ensures that at the end of a non-terminated coding pass there is not a 0xFF byte, modifying the stored rates if necessary.

checkExternSheet(int) - Method in class loci.poi.hssf.model.Workbook

returns the extern sheet number for specific sheet number , if this sheet doesn't exist in extern sheet , add it

checkFileSize() - Method in class ome.jxr.parser.FileParser

checkFileStructureVersion() - Method in class ome.jxr.parser.FileParser

checkGDISignaturePresence() - Method in class ome.jxr.parser.DatastreamParser

checkHeader() - Method in class loci.formats.tiff.TiffParser

Checks the TIFF header.

checkHeaderBOM() - Method in class ome.jxr.parser.FileParser

checkHeaderLength() - Method in class ome.jxr.parser.FileParser

checkIfValidJpegXr() - Method in class ome.jxr.parser.FileParser

checkImageJ() - Static method in class loci.plugins.util.LibraryChecker

Checks whether ImageJ is new enough for the Bio-Formats plugins.

checkImageJ(String, String) - Static method in class loci.plugins.util.LibraryChecker

Returns true the current ImageJ version is greater than or equal to the specified version.

checkImageJ(String, String, String) - Static method in class loci.plugins.util.LibraryChecker

Returns true the current ImageJ version is greater than or equal to the specified version.

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

checkJava() - Static method in class loci.plugins.util.LibraryChecker

Checks for a new enough version of the Java Runtime Environment.

checkKey(String, String) - Method in class loci.formats.in.MetamorphHandler

Check if the value needs to be saved.

checkKey(String, String) - Method in class loci.plugins.in.ImporterOptions

Tests whether the given boolean key is set in the specified options.

checkKey(Object) - Static method in class loci.poi.util.BinaryTree

check a key for validity (non-null and implements Comparable)

checkKeyAndValue(Object, Object) - Static method in class loci.poi.util.BinaryTree

check a key and a value for validity (non-null and implements Comparable)

checkLatest(String, String) - Static method in class loci.plugins.config.InstallWizard

checkLibrary() - Static method in class jj2000.j2k.util.NativeServices

Checks if the library SHLIB_NAME is already loaded and attempts to load if not yet loaded.

checkLibrary(LibraryChecker.Library, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker

Checks for a required library.

checkLibrary(String, String, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker

Checks whether the given class is available; if not, adds the specified JAR file name to the hash set (presumably to report it missing to the user).

checkMarkerLength(DataInputStream, String) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Checks that the marker segment length is correct.

checkMismatch(boolean, boolean, int, String) - Static method in class loci.tests.testng.FormatWriterTest

checkMismatch(int, int, int, String) - Static method in class loci.tests.testng.FormatWriterTest

checkMismatch(String, String, int, String) - Static method in class loci.tests.testng.FormatWriterTest

checkMissing(HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker

Reports missing libraries in the given hash set to the user.

checkNonNullComparable(Object, int) - Static method in class loci.poi.util.BinaryTree

check if an object is fit to be proper input ...

checkObsoleteOptions() - Method in class loci.plugins.in.ImporterOptions

Handles obsolete macro keys, for backward compatibility.

checkParams(int, byte[], int, int, int, int) - Method in class loci.formats.FormatWriter

Ensure that the arguments that are being passed to saveBytes(...) are valid.

checkParams - Variable in class loci.formats.out.TiffWriter

Whether or not to check the parameters passed to saveBytes.

checkParamsEmpty(ImageTypeSpecifier, int, int, List) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

checkPerformed - Static variable in class loci.plugins.in.UpgradeDialog

Whether an upgrade check has already been performed this session.

checkPlaneNumber(IFormatReader, int) - Static method in class loci.formats.FormatTools

Checks that the given plane number is valid for the given reader.

checkPlaneParameters(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Convenience method for checking that the plane number, tile size and buffer sizes are all valid for the given reader.

checkPoints(int) - Method in enum loci.formats.in.BaseZeissReader.FeatureType

checkPredTerm() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Checks for past errors in the decoding process using the predictable error resilient termination.

checkProgMode(String) - Method in class jj2000.j2k.entropy.ProgressionSpec

Check if the progression mode exists and if so, return its integer value.

checkQTLibrary() - Method in class loci.formats.gui.LegacyQTTools

Checks whether QTJava is available, throwing an exception if not.

checkRange(int, int, int, String) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

checkReadParamBandSettingsWrapper(ImageReadParam, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Wrapper for the protected method checkReadParamBandSettings.

checkRecordPosition() - Method in class loci.poi.hssf.record.RecordInputStream

checkRows() - Method in class loci.poi.hssf.model.Sheet

checkSampleModel(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

checkSampleModel(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

checkSheets(int) - Method in class loci.poi.hssf.model.Workbook

if we're trying to address one more sheet than we have, go ahead and add it! if we're trying to address >1 more than we have throw an exception!

checkSuffix(String, String) - Static method in class loci.formats.FormatHandler

Performs suffix matching for the given filename.

checkSuffix(String, String[]) - Static method in class loci.formats.FormatHandler

Performs suffix matching for the given filename.

checkTargetErrors() - Method in class jj2000.j2k.util.ThreadPool

Checks that no error or runtime exception in any target have occurred so far.

checkTileSize(IFormatReader, int, int, int, int) - Static method in class loci.formats.FormatTools

Checks that the given tile size is valid for the given reader.

checkTime(long, int, long, long) - Method in class loci.formats.in.TextReader

checkUnit(String, String...) - Method in class loci.formats.in.ICSReader

Verifies that a unit matches the expected value.

checkUTF8(InputStream) - Static method in class loci.common.xml.XMLTools

Checks the given stream for a UTF-8 BOM header, skipping it if present.

checkUUIDInfoBox(Node, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Check whether the child with a name childName exists.

checkValidId(String) - Static method in class loci.common.Location

Checks that the given id points at a valid data stream.

checkValue(Object) - Static method in class loci.poi.util.BinaryTree

check a value for validity (non-null and implements Comparable)

Child - Interface in loci.poi.poifs.property

This interface defines methods for finding and setting sibling Property instances

childCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

childNames - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

childPolicy - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo

childRecords - Variable in class loci.poi.ddf.EscherContainerRecord

childRecords - Variable in class loci.poi.ddf.UnknownEscherRecord

children - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

children - Variable in class loci.poi.hssf.model.Node

CHIP_SIZE_X - Static variable in class loci.formats.in.FluoviewReader

CHIP_SIZE_Y - Static variable in class loci.formats.in.FluoviewReader

chksum - Variable in class loci.formats.in.SDTInfo

chosenDocumentDescriptors - Variable in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

CHROMA_SUBSAMPLING - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor

chromaCenteringX - Variable in class ome.jxr.parser.DatastreamParser

chromaCenteringY - Variable in class ome.jxr.parser.DatastreamParser

chromaSubsampleH - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

chromaSubsampleV - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

CHUNK_SIZE - Static variable in class loci.formats.UpgradeChecker

Number of bytes to read from the CI server at a time.

chunkSizes - Variable in class loci.formats.in.NativeQTReader

Number of bytes in each plane.

CHZ - Static variable in class ome.units.UNITS

CI_SERVER - Static variable in class loci.formats.UpgradeChecker

Location of the OME continuous integration server.

cIndex - Variable in class loci.formats.in.BaseZeissReader

cIndex - Variable in class loci.plugins.util.DataBrowser

CIRCLE - Static variable in class loci.formats.in.FV1000Reader

CIRCLE - Static variable in class loci.formats.in.ZeissLSMReader

CIRCLE_3POINT - Static variable in class loci.formats.in.ZeissLSMReader

cLabel - Variable in class loci.formats.gui.DataConverter

clamp(float) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

clamp(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

clamp2(float) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

CLASS_ARRAY - Static variable in class loci.poi.hssf.record.formula.Ptg

CLASS_IMAGE_5D - Static variable in class loci.plugins.in.ImporterOptions

CLASS_LABELS - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

CLASS_REF - Static variable in class loci.poi.hssf.record.formula.Ptg

CLASS_VALUE - Static variable in class loci.poi.hssf.record.formula.Ptg

CLASS_VIEW_5D - Static variable in class loci.plugins.in.ImporterOptions

classes - Variable in class loci.formats.ClassList

List of classes.

classes - Variable in class loci.formats.in.CellH5Reader

ClassID - Class in loci.poi.hpsf

Represents a class ID (16 bytes).

ClassID(byte[], int) - Constructor for class loci.poi.hpsf.ClassID

Creates a ClassID and reads its value from a byte array.

ClassID() - Constructor for class loci.poi.hpsf.ClassID

Creates a ClassID and initializes its value with 0x00 bytes.

classID - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's "classID" field.

ClassList<T> - Class in loci.formats

ClassList is a list of classes for use with ImageReader or ImageWriter, parsed from a configuration file such as readers.txt or writers.txt.

ClassList(Class<T>) - Constructor for class loci.formats.ClassList

Constructs a list of classes, initially empty.

ClassList(String, Class<T>) - Constructor for class loci.formats.ClassList

Constructs a list of classes from the given configuration file.

ClassList(String, Class<T>, Class<?>) - Constructor for class loci.formats.ClassList

Constructs a list of classes from the given configuration file.

classList - Variable in class loci.formats.FileStitcher

CLEAN_FAX_DATA_ERRORS_CORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

A value to be used with the "CleanFaxData" tag.

CLEAN_FAX_DATA_ERRORS_UNCORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

A value to be used with the "CleanFaxData" tag.

CLEAN_FAX_DATA_NO_ERRORS - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

A value to be used with the "CleanFaxData" tag.

cleanStaleCacheEntries() - Static method in class loci.common.Location

Remove any cached directory listings that have expired.

cleanup() - Method in class loci.formats.Memoizer

cleanup() - Method in class loci.tests.testng.SubResolutionTest

cleanuppass(DataBlk, MQDecoder, int, int[], int[], boolean) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Performs the cleanup pass on the specified data and bit-plane.

cleanuppass(CBlkWTData, MQCoder, boolean, int, int[], int[], int[], int[], int[], int[], int, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Performs the cleanup pass on the specified data and bit-plane.

clear() - Method in class loci.formats.codec.ByteVector

clear() - Method in class loci.poi.hpsf.MutableSection

Removes all properties from the section including 0 (dictionary) and 1 (codepage).

clear() - Method in class loci.poi.hssf.record.EscherAggregate

clear() - Method in class loci.poi.util.BinaryTree

Removes all mappings from this map

clear(int) - Method in class loci.poi.util.BitField

Clear the bits.

clear() - Method in class loci.poi.util.DoubleList

Removes all of the elements from this list.

clear() - Method in class loci.poi.util.IntList

Removes all of the elements from this list.

clear() - Method in class loci.poi.util.ShortList

Removes all of the elements from this list.

clear() - Method in class ome.xml.model.ReferenceList

CLEAR_CODE - Static variable in class loci.formats.codec.LZWCodec

clearByte(byte) - Method in class loci.poi.util.BitField

Clear the bits.

clearCode_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

reserved clear code based on code size

clearDestImage() - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

clearDirectoryListingsCache() - Static method in class loci.common.Location

Clear the directory listings cache.

clearEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

clearFormatting() - Method in class loci.poi.hssf.record.UnicodeString

clearFormatting() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Removes any formatting that may have been applied to the string.

clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

clearSections() - Method in class loci.poi.hpsf.MutablePropertySet

Removes all sections from this property set.

clearSections() - Method in class loci.poi.hpsf.SpecialPropertySet

clearSeries() - Method in class loci.plugins.in.ImporterOptions

clearShort(short) - Method in class loci.poi.util.BitField

Clear the bits.

clearSubRecords() - Method in class loci.poi.hssf.record.ObjRecord

ClearTable(int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

clearTargetErrors() - Method in class jj2000.j2k.util.ThreadPool

Clears the current target error conditions, if any.

clearXML() - Method in class loci.formats.in.ZeissCZIReader.Metadata

clength - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Length of codestream

cLengths - Variable in class loci.plugins.util.DataBrowser

clip(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

clip(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

clip(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

clip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

clipDestination(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

CLIPPING - Static variable in class loci.formats.in.CellSensReader

CLIPPING_MAGIC_STRING - Static variable in class loci.formats.in.VolocityClippingReader

CLIPPING_STATE - Static variable in class loci.formats.in.CellSensReader

clippingData - Variable in class loci.formats.in.VolocityReader.Stack

clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

CLOCKWISE - Static variable in class loci.formats.in.FluoviewReader

clone() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Clones the directory and all the fields contained therein.

clone() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

clone() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

clone() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

clone() - Method in class jj2000.j2k.ModuleSpec

clone() - Method in class loci.formats.CoreMetadata

clone(IFormatReader, int) - Method in class loci.formats.CoreMetadata

clone() - Method in class loci.formats.SwappableMetadata

clone(IFormatReader, int) - Method in class loci.formats.SwappableMetadata

clone() - Method in class loci.poi.ddf.EscherRecord

Escher records may need to be clonable in the future.

clone() - Method in class loci.poi.ddf.EscherTextboxRecord

clone() - Method in class loci.poi.ddf.UnknownEscherRecord

clone() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

clone() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Performs a deep clone of the record

clone() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

clone() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Performs a deep clone of the record

clone() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Performs a deep clone of the record

clone() - Method in class loci.poi.hssf.record.AreaFormatRecord

clone() - Method in class loci.poi.hssf.record.AreaRecord

clone() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

clone() - Method in class loci.poi.hssf.record.AxisOptionsRecord

clone() - Method in class loci.poi.hssf.record.AxisParentRecord

clone() - Method in class loci.poi.hssf.record.AxisRecord

clone() - Method in class loci.poi.hssf.record.AxisUsedRecord

clone() - Method in class loci.poi.hssf.record.BarRecord

clone() - Method in class loci.poi.hssf.record.BlankRecord

clone() - Method in class loci.poi.hssf.record.BOFRecord

clone() - Method in class loci.poi.hssf.record.BoolErrRecord

clone() - Method in class loci.poi.hssf.record.BottomMarginRecord

clone() - Method in class loci.poi.hssf.record.CalcCountRecord

clone() - Method in class loci.poi.hssf.record.CalcModeRecord

clone() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

clone() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

clone() - Method in class loci.poi.hssf.record.ChartRecord

clone() - Method in class loci.poi.hssf.record.ColumnInfoRecord

clone() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

clone() - Method in class loci.poi.hssf.record.ContinueRecord

Clone this record.

clone() - Method in class loci.poi.hssf.record.DataFormatRecord

clone() - Method in class loci.poi.hssf.record.DatRecord

clone() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

clone() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

clone() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

clone() - Method in class loci.poi.hssf.record.DeltaRecord

clone() - Method in class loci.poi.hssf.record.DimensionsRecord

clone() - Method in class loci.poi.hssf.record.EndSubRecord

clone() - Method in class loci.poi.hssf.record.EOFRecord

clone() - Method in class loci.poi.hssf.record.FilePassRecord

clone() - Method in class loci.poi.hssf.record.FileSharingRecord

Clone this record.

clone() - Method in class loci.poi.hssf.record.FontBasisRecord

clone() - Method in class loci.poi.hssf.record.FontIndexRecord

clone() - Method in class loci.poi.hssf.record.FooterRecord

clone() - Method in class loci.poi.hssf.record.formula.AddPtg

clone() - Method in class loci.poi.hssf.record.formula.Area3DPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaAPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaErrPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaNAPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaNPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaNVPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaPtg

clone() - Method in class loci.poi.hssf.record.formula.AreaVPtg

clone() - Method in class loci.poi.hssf.record.formula.ArrayPtg

clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgA

clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgV

clone() - Method in class loci.poi.hssf.record.formula.AttrPtg

clone() - Method in class loci.poi.hssf.record.formula.BoolPtg

clone() - Method in class loci.poi.hssf.record.formula.ConcatPtg

clone() - Method in class loci.poi.hssf.record.formula.DividePtg

clone() - Method in class loci.poi.hssf.record.formula.EqualPtg

clone() - Method in class loci.poi.hssf.record.formula.ErrPtg

clone() - Method in class loci.poi.hssf.record.formula.ExpPtg

clone() - Method in class loci.poi.hssf.record.formula.FuncPtg

clone() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

clone() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

clone() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Implementation of clone method from Object

clone() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

clone() - Method in class loci.poi.hssf.record.formula.IntPtg

clone() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

clone() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Implementation of clone method from Object

clone() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

clone() - Method in class loci.poi.hssf.record.formula.MemErrPtg

clone() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

clone() - Method in class loci.poi.hssf.record.formula.MissingArgPtg

clone() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

clone() - Method in class loci.poi.hssf.record.formula.NamePtg

clone() - Method in class loci.poi.hssf.record.formula.NameXPtg

clone() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

clone() - Method in class loci.poi.hssf.record.formula.NumberPtg

clone() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

clone() - Method in class loci.poi.hssf.record.formula.PercentPtg

clone() - Method in class loci.poi.hssf.record.formula.PowerPtg

clone() - Method in class loci.poi.hssf.record.formula.Ptg

clone() - Method in class loci.poi.hssf.record.formula.RangePtg

clone() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

clone() - Method in class loci.poi.hssf.record.formula.RefAPtg

clone() - Method in class loci.poi.hssf.record.formula.ReferencePtg

clone() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

clone() - Method in class loci.poi.hssf.record.formula.RefNAPtg

clone() - Method in class loci.poi.hssf.record.formula.RefNPtg

clone() - Method in class loci.poi.hssf.record.formula.RefNVPtg

clone() - Method in class loci.poi.hssf.record.formula.RefVPtg

clone() - Method in class loci.poi.hssf.record.formula.StringPtg

clone() - Method in class loci.poi.hssf.record.formula.SubtractPtg

clone() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

clone() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

clone() - Method in class loci.poi.hssf.record.formula.UnionPtg

clone() - Method in class loci.poi.hssf.record.formula.UnknownPtg

clone() - Method in class loci.poi.hssf.record.FormulaRecord

clone() - Method in class loci.poi.hssf.record.FrameRecord

clone() - Method in class loci.poi.hssf.record.GridsetRecord

clone() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

clone() - Method in class loci.poi.hssf.record.GutsRecord

clone() - Method in class loci.poi.hssf.record.HCenterRecord

clone() - Method in class loci.poi.hssf.record.HeaderRecord

clone() - Method in class loci.poi.hssf.record.IndexRecord

clone() - Method in class loci.poi.hssf.record.IterationRecord

clone() - Method in class loci.poi.hssf.record.LabelRecord

clone() - Method in class loci.poi.hssf.record.LabelSSTRecord

clone() - Method in class loci.poi.hssf.record.LeftMarginRecord

clone() - Method in class loci.poi.hssf.record.LegendRecord

clone() - Method in class loci.poi.hssf.record.LineFormatRecord

clone() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

clone() - Method in class loci.poi.hssf.record.LinkedDataRecord

clone() - Method in class loci.poi.hssf.record.MergeCellsRecord

clone() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

clone() - Method in class loci.poi.hssf.record.NumberRecord

clone() - Method in class loci.poi.hssf.record.ObjectLinkRecord

clone() - Method in class loci.poi.hssf.record.ObjectProtectRecord

clone() - Method in class loci.poi.hssf.record.ObjRecord

clone() - Method in class loci.poi.hssf.record.PageBreakRecord

clone() - Method in class loci.poi.hssf.record.PaneRecord

clone() - Method in class loci.poi.hssf.record.PasswordRecord

Clone this record.

clone() - Method in class loci.poi.hssf.record.PlotAreaRecord

clone() - Method in class loci.poi.hssf.record.PlotGrowthRecord

clone() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

clone() - Method in class loci.poi.hssf.record.PrintHeadersRecord

clone() - Method in class loci.poi.hssf.record.PrintSetupRecord

clone() - Method in class loci.poi.hssf.record.ProtectRecord

clone() - Method in class loci.poi.hssf.record.Record

clone() - Method in class loci.poi.hssf.record.RefModeRecord

clone() - Method in class loci.poi.hssf.record.RightMarginRecord

clone() - Method in class loci.poi.hssf.record.RKRecord

clone() - Method in class loci.poi.hssf.record.RowRecord

clone() - Method in class loci.poi.hssf.record.SaveRecalcRecord

clone() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

clone() - Method in class loci.poi.hssf.record.SCLRecord

clone() - Method in class loci.poi.hssf.record.SelectionRecord

clone() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

clone() - Method in class loci.poi.hssf.record.SeriesIndexRecord

clone() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

clone() - Method in class loci.poi.hssf.record.SeriesListRecord

clone() - Method in class loci.poi.hssf.record.SeriesRecord

clone() - Method in class loci.poi.hssf.record.SeriesTextRecord

clone() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

clone() - Method in class loci.poi.hssf.record.SharedFormulaRecord

clone() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

clone() - Method in class loci.poi.hssf.record.StringRecord

clone() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

clone() - Method in class loci.poi.hssf.record.TextRecord

clone() - Method in class loci.poi.hssf.record.TickRecord

clone() - Method in class loci.poi.hssf.record.TopMarginRecord

clone() - Method in class loci.poi.hssf.record.UnicodeString

clone() - Method in class loci.poi.hssf.record.UnitsRecord

clone() - Method in class loci.poi.hssf.record.UnknownRecord

Unlike the other Record.clone methods this is a shallow clone

clone() - Method in class loci.poi.hssf.record.ValueRangeRecord

clone() - Method in class loci.poi.hssf.record.VCenterRecord

clone() - Method in class loci.poi.hssf.record.WindowTwoRecord

clone() - Method in class loci.poi.hssf.record.WSBoolRecord

clone() - Method in class mdbtools.libmdb.MdbColumn

clone() - Method in class mdbtools.libmdb.MdbSarg

cloneArray(int[]) - Method in class loci.poi.hssf.usermodel.HSSFPolygon

cloneImageReadParam(ImageReadParam, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

Creates a copy of param.

cloneNode(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

cloneSheet() - Method in class loci.poi.hssf.model.Sheet

Clones the low level records of this sheet and returns the new sheet instance.

cloneSheet(HSSFWorkbook) - Method in class loci.poi.hssf.usermodel.HSSFSheet

cloneSheet(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create an HSSFSheet from an existing sheet in the HSSFWorkbook.

cloneStringIfRequired() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Called whenever the unicode string is modified.

close() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

Invokes the superclass method and sets the internal reference to the source FileChannel to null.

close() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Invokes the superclass method, writes any unwritten data, and sets the internal reference to the source FileChannel to null.

close() - Method in class com.sun.media.imageio.stream.RawImageInputStream

close() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter

close() - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter

close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

close() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Closes the underlying resource (file, stream, network connection, etc.).

close() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Writes the EOC marker and closes the underlying stream.

close() - Method in class jj2000.j2k.image.input.ImgReader

Closes the underlying file or network connection from where the image data is being read.

close() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Closes the underlying RandomAccessFile from where the image data is being read.

close() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Closes the buffered random access file

close() - Method in interface jj2000.j2k.io.RandomAccessIO

Closes the I/O stream.

close() - Method in class jj2000.j2k.util.ISRandomAccessIO

Closes this object for reading as well as the wrapped InputStream, if not already closed.

close() - Method in class loci.common.ByteArrayHandle

close() - Method in class loci.common.CBZip2InputStream

close() - Method in class loci.common.FileHandle

close() - Method in interface loci.common.IRandomAccess

Closes this random access stream and releases any system resources associated with the stream.

close() - Method in class loci.common.NIOFileHandle

close() - Method in class loci.common.NIOInputStream

Closes the streams.

close() - Method in class loci.common.RandomAccessInputStream

Closes the streams.

close() - Method in class loci.common.RandomAccessOutputStream

close() - Method in class loci.common.StreamHandle

close() - Method in class loci.common.ZipHandle

close(boolean) - Method in class loci.formats.ChannelSeparator

close() - Method in class loci.formats.codec.JPEGTileDecoder

close(boolean) - Method in class loci.formats.DelegateReader

close() - Method in class loci.formats.FileStitcher

close(boolean) - Method in class loci.formats.FileStitcher

close(boolean) - Method in class loci.formats.FormatReader

close() - Method in class loci.formats.FormatReader

close() - Method in class loci.formats.FormatWriter

close() - Method in class loci.formats.gui.PreviewPane

Closes the underlying image reader.

close(boolean) - Method in interface loci.formats.IFormatReader

Closes the currently open file.

close(boolean) - Method in class loci.formats.ImageReader

close() - Method in class loci.formats.ImageReader

close() - Method in class loci.formats.ImageWriter

close(boolean) - Method in class loci.formats.in.AFIReader

close(boolean) - Method in class loci.formats.in.AIMReader

close(boolean) - Method in class loci.formats.in.AliconaReader

close(boolean) - Method in class loci.formats.in.AmiraReader

close(boolean) - Method in class loci.formats.in.AnalyzeReader

close(boolean) - Method in class loci.formats.in.APLReader

close(boolean) - Method in class loci.formats.in.APNGReader

close(boolean) - Method in class loci.formats.in.AVIReader

close(boolean) - Method in class loci.formats.in.BaseZeissReader

close(boolean) - Method in class loci.formats.in.BDReader

close(boolean) - Method in class loci.formats.in.BioRadReader

close(boolean) - Method in class loci.formats.in.BioRadSCNReader

close(boolean) - Method in class loci.formats.in.BMPReader

close(boolean) - Method in class loci.formats.in.BrukerReader

close(boolean) - Method in class loci.formats.in.BurleighReader

close(boolean) - Method in class loci.formats.in.CanonRawReader

close(boolean) - Method in class loci.formats.in.CellH5Reader

close(boolean) - Method in class loci.formats.in.CellomicsReader

close(boolean) - Method in class loci.formats.in.CellSensReader

close(boolean) - Method in class loci.formats.in.CellWorxReader

close(boolean) - Method in class loci.formats.in.DeltavisionReader

close(boolean) - Method in class loci.formats.in.DicomReader

close(boolean) - Method in class loci.formats.in.DNGReader

close(boolean) - Method in class loci.formats.in.EPSReader

close(boolean) - Method in class loci.formats.in.FakeReader

close(boolean) - Method in class loci.formats.in.FEIReader

close(boolean) - Method in class loci.formats.in.FEITiffReader

close(boolean) - Method in class loci.formats.in.FilePatternReader

close() - Method in class loci.formats.in.FilePatternReader

close(boolean) - Method in class loci.formats.in.FitsReader

close(boolean) - Method in class loci.formats.in.FlexReader

close(boolean) - Method in class loci.formats.in.FlowSightReader

close(boolean) - Method in class loci.formats.in.FluoviewReader

close(boolean) - Method in class loci.formats.in.FujiReader

close(boolean) - Method in class loci.formats.in.FV1000Reader

close(boolean) - Method in class loci.formats.in.GatanDM2Reader

close(boolean) - Method in class loci.formats.in.GatanReader

close(boolean) - Method in class loci.formats.in.GIFReader

close(boolean) - Method in class loci.formats.in.HamamatsuVMSReader

close(boolean) - Method in class loci.formats.in.HitachiReader

close(boolean) - Method in class loci.formats.in.HRDGDFReader

close(boolean) - Method in class loci.formats.in.ICSReader

close(boolean) - Method in class loci.formats.in.IM3Reader

close(boolean) - Method in class loci.formats.in.ImaconReader

close(boolean) - Method in class loci.formats.in.ImageIOReader

close(boolean) - Method in class loci.formats.in.ImagicReader

close(boolean) - Method in class loci.formats.in.ImarisHDFReader

close(boolean) - Method in class loci.formats.in.ImarisReader

close(boolean) - Method in class loci.formats.in.IMODReader

close(boolean) - Method in class loci.formats.in.ImprovisionTiffReader

close(boolean) - Method in class loci.formats.in.ImspectorReader

close(boolean) - Method in class loci.formats.in.InCell3000Reader

close(boolean) - Method in class loci.formats.in.InCellReader

close(boolean) - Method in class loci.formats.in.InveonReader

close(boolean) - Method in class loci.formats.in.IPLabReader

close(boolean) - Method in class loci.formats.in.IPWReader

close(boolean) - Method in class loci.formats.in.IvisionReader

close(boolean) - Method in class loci.formats.in.JEOLReader

close(boolean) - Method in class loci.formats.in.JPEG2000Reader

close(boolean) - Method in class loci.formats.in.JPEGReader

close(boolean) - Method in class loci.formats.in.JPXReader

close(boolean) - Method in class loci.formats.in.KhorosReader

close(boolean) - Method in class loci.formats.in.KodakReader

close(boolean) - Method in class loci.formats.in.L2DReader

close(boolean) - Method in class loci.formats.in.LegacyQTReader

close(boolean) - Method in class loci.formats.in.LeicaReader

close(boolean) - Method in class loci.formats.in.LeicaSCNReader

close(boolean) - Method in class loci.formats.in.LiFlimReader

close(boolean) - Method in class loci.formats.in.LIFReader

close(boolean) - Method in class loci.formats.in.LIMReader

close(boolean) - Method in class loci.formats.in.MetamorphReader

close(boolean) - Method in class loci.formats.in.MIASReader

close(boolean) - Method in class loci.formats.in.MicromanagerReader

close(boolean) - Method in class loci.formats.in.MINCReader

close(boolean) - Method in class loci.formats.in.MinimalTiffReader

close(boolean) - Method in class loci.formats.in.MNGReader

close(boolean) - Method in class loci.formats.in.MolecularImagingReader

close(boolean) - Method in class loci.formats.in.MRCReader

close(boolean) - Method in class loci.formats.in.MRWReader

close(boolean) - Method in class loci.formats.in.NAFReader

close(boolean) - Method in class loci.formats.in.NativeND2Reader

close(boolean) - Method in class loci.formats.in.NativeQTReader

close(boolean) - Method in class loci.formats.in.NDPIReader

close(boolean) - Method in class loci.formats.in.NDPISReader

close(boolean) - Method in class loci.formats.in.NiftiReader

close(boolean) - Method in class loci.formats.in.NikonElementsTiffReader

close(boolean) - Method in class loci.formats.in.NikonReader

close(boolean) - Method in class loci.formats.in.NikonTiffReader

close(boolean) - Method in class loci.formats.in.NRRDReader

close(boolean) - Method in class loci.formats.in.OBFReader

close(boolean) - Method in class loci.formats.in.OMETiffReader

close(boolean) - Method in class loci.formats.in.OMEXMLReader

close(boolean) - Method in class loci.formats.in.OpenlabRawReader

close(boolean) - Method in class loci.formats.in.OpenlabReader

close(boolean) - Method in class loci.formats.in.OperettaReader

close(boolean) - Method in class loci.formats.in.PCIReader

close(boolean) - Method in class loci.formats.in.PCORAWReader

close(boolean) - Method in class loci.formats.in.PCXReader

close(boolean) - Method in class loci.formats.in.PDSReader

close(boolean) - Method in class loci.formats.in.PerkinElmerReader

close(boolean) - Method in class loci.formats.in.PGMReader

close(boolean) - Method in class loci.formats.in.PhotoshopTiffReader

close(boolean) - Method in class loci.formats.in.PictReader

close(boolean) - Method in class loci.formats.in.PQBinReader

close(boolean) - Method in class loci.formats.in.PrairieReader

close(boolean) - Method in class loci.formats.in.PSDReader

close(boolean) - Method in class loci.formats.in.QuesantReader

close(boolean) - Method in class loci.formats.in.RHKReader

close(boolean) - Method in class loci.formats.in.SBIGReader

close(boolean) - Method in class loci.formats.in.ScanrReader

close(boolean) - Method in class loci.formats.in.ScreenReader

close(boolean) - Method in class loci.formats.in.SDTReader

close(boolean) - Method in class loci.formats.in.SIFReader

close(boolean) - Method in class loci.formats.in.SimplePCITiffReader

close(boolean) - Method in class loci.formats.in.SISReader

close(boolean) - Method in class loci.formats.in.SlideBook6Reader

close(boolean) - Method in class loci.formats.in.SlidebookReader

close(boolean) - Method in class loci.formats.in.SlidebookTiffReader

close(boolean) - Method in class loci.formats.in.SpiderReader

close(boolean) - Method in class loci.formats.in.SVSReader

close(boolean) - Method in class loci.formats.in.TargaReader

close(boolean) - Method in class loci.formats.in.TCSReader

close(boolean) - Method in class loci.formats.in.TextReader

close(boolean) - Method in class loci.formats.in.TiffReader

close(boolean) - Method in class loci.formats.in.TileJPEGReader

close(boolean) - Method in class loci.formats.in.TillVisionReader

close(boolean) - Method in class loci.formats.in.TopometrixReader

close(boolean) - Method in class loci.formats.in.TrestleReader

close(boolean) - Method in class loci.formats.in.UBMReader

close(boolean) - Method in class loci.formats.in.UnisokuReader

close(boolean) - Method in class loci.formats.in.VarianFDFReader

close(boolean) - Method in class loci.formats.in.VeecoReader

close(boolean) - Method in class loci.formats.in.VisitechReader

close(boolean) - Method in class loci.formats.in.VolocityClippingReader

close(boolean) - Method in class loci.formats.in.VolocityReader

close(boolean) - Method in class loci.formats.in.WlzReader

close(boolean) - Method in class loci.formats.in.ZeissCZIReader

close() - Method in class loci.formats.in.ZeissCZIReader.Segment

close(boolean) - Method in class loci.formats.in.ZeissLMSReader

close(boolean) - Method in class loci.formats.in.ZeissLSMReader

close(boolean) - Method in class loci.formats.in.ZeissTIFFReader

close(boolean) - Method in class loci.formats.in.ZeissZVIReader

close(boolean) - Method in class loci.formats.in.ZipReader

close() - Method in class loci.formats.Memoizer

close(boolean) - Method in class loci.formats.Memoizer

close() - Method in interface loci.formats.Memoizer.Deser

close() - Method in class loci.formats.Memoizer.KryoDeser

close(boolean) - Method in class loci.formats.MinMaxCalculator

close() - Method in class loci.formats.out.APNGWriter

close() - Method in class loci.formats.out.AVIWriter

close() - Method in class loci.formats.out.CellH5Writer

close() - Method in class loci.formats.out.ICSWriter

close() - Method in class loci.formats.out.JavaWriter

close() - Method in class loci.formats.out.LegacyQTWriter

close() - Method in class loci.formats.out.OMETiffWriter

close() - Method in class loci.formats.out.OMEXMLWriter

close() - Method in class loci.formats.out.QTWriter

close() - Method in class loci.formats.out.TiffWriter

close() - Method in class loci.formats.out.V3DrawWriter

close() - Method in class loci.formats.out.WlzWriter

close(boolean) - Method in class loci.formats.ReaderWrapper

close() - Method in class loci.formats.ReaderWrapper

close() - Method in interface loci.formats.services.EXIFService

close() - Method in class loci.formats.services.EXIFServiceImpl

close() - Method in interface loci.formats.services.JHDFService

Closes and resets the service.

close() - Method in class loci.formats.services.JHDFServiceImpl

close() - Method in interface loci.formats.services.JPEGTurboService

close() - Method in class loci.formats.services.JPEGTurboServiceImpl

close() - Method in interface loci.formats.services.MDBService

Close the currently initialized file.

close() - Method in class loci.formats.services.MDBServiceImpl

close() - Method in interface loci.formats.services.MetakitService

close() - Method in class loci.formats.services.MetakitServiceImpl

close() - Method in interface loci.formats.services.NetCDFService

Closes and resets the service.

close() - Method in class loci.formats.services.NetCDFServiceImpl

close() - Method in interface loci.formats.services.POIService

Close the current POI file system.

close() - Method in class loci.formats.services.POIServiceImpl

close() - Method in interface loci.formats.services.WlzService

Closes the file.

close() - Method in class loci.formats.services.WlzServiceImpl

close() - Method in class loci.formats.tiff.OnDemandLongArray

close() - Method in class loci.formats.tiff.TiffSaver

Closes the output stream if not null.

close() - Method in class loci.formats.WriterWrapper

close() - Method in class loci.plugins.config.TextAreaWriter

Closing a TextAreaWriter does nothing.

close() - Method in class loci.plugins.macro.LociFunctions

close() - Method in class loci.plugins.util.VirtualImagePlus

close() - Method in class loci.plugins.util.VirtualReader

close() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Closes this input stream and releases any system resources associated with the stream.

close() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Closes this output stream and releases any system resources associated with this stream.

close() - Method in class loci.poi.util.BlockingInputStream

close() - Method in class loci.tests.testng.FormatReaderTest

close() - Method in class mdbtools.examples.MemoryRandomAccess

close() - Method in class mdbtools.jdbc2.File

close() - Method in class mdbtools.libmdb.MdbFile

close() - Method in class mdbtools.libmdb.MdbHandle

close() - Method in interface mdbtools.publicapi.RandomAccess

close() - Method in class ome.jxr.JXRReader

close() - Method in class ome.jxr.parser.DatastreamParser

close() - Method in class ome.jxr.parser.FileParser

close() - Method in class ome.jxr.parser.IFDParser

close() - Method in class ome.jxr.parser.Parser

close() - Method in class ome.metakit.MetakitReader

Close the reader and release any resources in use.

close() - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Free the native structures associated with this compressor instance.

close() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Free the native structures associated with this decompressor instance.

CLOSED_ARROW - Static variable in class loci.formats.in.ZeissLSMReader

CLOSED_BEZIER - Static variable in class loci.formats.in.ZeissLSMReader

CLOSED_CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty

CLOSED_POLYGON - Static variable in class loci.poi.ddf.EscherShapePathProperty

CLOSED_POLYLINE - Static variable in class loci.formats.in.ZeissLSMReader

closeFile() - Method in class loci.formats.in.SlideBook6Reader

closeFile() - Method in class loci.formats.tools.MakeDatasetStructureTable

Close the output file.

closeFileOnly() - Method in class loci.plugins.macro.LociFunctions

cm - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

cm - Variable in class loci.formats.FormatWriter

Default color model.

CM - Static variable in class ome.units.UNITS

cNames - Variable in class loci.formats.in.ImprovisionTiffReader

co - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

co2Percent - Variable in class loci.formats.in.ZeissCZIReader

co2Percent - Variable in class ome.xml.model.ImagingEnvironment

COARSE_FRAME_IFD - Static variable in class loci.formats.in.CellSensReader

COARSE_PYRAMID_LEVEL - Static variable in class loci.formats.in.CellSensReader

COBOL - Static variable in class loci.common.DateTools

COBOL_EPOCH - Static variable in class loci.common.DateTools

coc - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the COC marker segments found in main and first tile-part header.

COC - Static variable in interface jj2000.j2k.codestream.Markers

Coding style component (COC): 0xFF53

COC_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for COC marker segment found

cod - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the COD marker segments found in main and first tile-part header.

COD - Static variable in interface jj2000.j2k.codestream.Markers

Coding style default (COD): 0xFF52

COD_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for COD marker segment found

code - Variable in enum loci.formats.codec.CompressionType

Code for the compression.

code - Variable in enum loci.formats.codec.JPEG2000BoxType

Code for the box type.

code - Variable in enum loci.formats.codec.JPEG2000SegmentMarker

Code for the segment marker.

code - Variable in class loci.formats.in.FV1000Reader

code - Variable in enum loci.formats.tiff.IFDType

Code for the IFD type in the actual TIFF file.

code - Variable in enum loci.formats.tiff.PhotoInterp

Code for the IFD type in the actual TIFF file.

code - Variable in enum loci.formats.tiff.TiffCompression

Code for the TIFF compression in the actual TIFF file.

codeBlockSize - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies the maximum code-block size to use for tile-component.

codeBlockSize - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies the maximum code-block size to use for tile-component.

codeBlockSize - Variable in class loci.formats.codec.JPEG2000CodecOptions

The maximum code-block size to use per tile-component as it would be provided to: J2KImageWriteParam.setCodeBlockSize(int[]) (WRITE).

Codec - Interface in loci.formats.codec

This class is an interface for any kind of compression or decompression.

codec - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

codec - Variable in class loci.formats.gui.DataConverter

codec - Variable in class loci.formats.in.NativeND2Reader

Codec to use when decompressing pixel data.

codec - Variable in class loci.formats.in.NativeQTReader

Video codec used by this movie.

codec - Variable in class loci.formats.out.LegacyQTWriter

The codec to use.

codec - Variable in class loci.formats.out.QTWriter

The codec to use.

codec - Variable in enum loci.formats.tiff.TiffCompression

TIFF compression codec.

CODEC_ANIMATION - Static variable in class loci.formats.out.QTWriter

Value indicating Animation codec.

CODEC_CINEPAK - Static variable in class loci.formats.out.QTWriter

Value indicating Cinepak codec.

CODEC_H_263 - Static variable in class loci.formats.out.QTWriter

Value indicating H.263 codec.

CODEC_MOTION_JPEG_B - Static variable in class loci.formats.out.QTWriter

Value indicating Motion JPEG-B codec.

CODEC_MPEG_4 - Static variable in class loci.formats.out.QTWriter

Value indicating MPEG-4 codec.

CODEC_RAW - Static variable in class loci.formats.out.QTWriter

Value indicating Raw codec.

CODEC_SORENSON - Static variable in class loci.formats.out.QTWriter

Value indicating Sorenson codec.

CODEC_SORENSON_3 - Static variable in class loci.formats.out.QTWriter

Value indicating Sorenson 3 codec.

codecName - Variable in enum loci.formats.tiff.TiffCompression

Name of the TIFF compression codec.

CodecOptions - Class in loci.formats.codec

Options for compressing and decompressing data.

CodecOptions() - Constructor for class loci.formats.codec.CodecOptions

Construct a new CodecOptions.

CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.CodecOptions

Construct a new CodecOptions using the given CodecOptions.

codecOptions - Variable in class loci.formats.tiff.TiffParser

Codec options to be used when decoding compressed pixel data.

CodedCBlk - Class in jj2000.j2k.entropy

This is the generic class to store coded (compressed) code-block.

CodedCBlk() - Constructor for class jj2000.j2k.entropy.CodedCBlk

Creates a new CodedCBlk object wit the default values and without allocating any space for its members.

CodedCBlk(int, int, int, byte[]) - Constructor for class jj2000.j2k.entropy.CodedCBlk

Creates a new CodedCBlk object with the specified values.

CodedCBlkDataSrcDec - Interface in jj2000.j2k.entropy.decoder

This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.

CodedCBlkDataSrcEnc - Interface in jj2000.j2k.entropy.encoder

This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.

CodedEnum - Interface in loci.common.enumeration

Enumeration which is coded.

CODEPAGE - Static variable in class loci.poi.hssf.model.Workbook

constant used to set the "codepage" wherever "codepage" is set in records (which is duplciated in more than one record)

CODEPAGE - Static variable in class loci.poi.hssf.record.CodepageRecord

the likely correct value for CODEPAGE (at least for US versions).

CODEPAGE - Static variable in class loci.poi.hssf.record.InterfaceHdrRecord

suggested (and probably correct) default

CodepageRecord - Class in loci.poi.hssf.record

Title: Codepage Record

CodepageRecord() - Constructor for class loci.poi.hssf.record.CodepageRecord

CodepageRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CodepageRecord

Constructs a CodepageRecord and sets its fields appropriately

codepageToEncoding(int) - Static method in class loci.poi.hpsf.VariantSupport

Turns a codepage number into the equivalent character encoding's name.

codeSegSymbol - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Inserts an error resilience segmentation symbol in the MQ codeword at the end of each bit-plane (cleanup pass).

codeSize_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

base underlying code size of data being compressed 8 for TIFF, 1 to 8 for GIF

CODESTREAM_VERSION - Static variable in class ome.jxr.constants.File

codeStreamLength - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

The lengths of the codestreams in the fileformat

CodestreamManipulator - Class in jj2000.j2k.util

This class takes a legal JPEG 2000 codestream and performs some manipulation on it.

CodestreamManipulator(File, int, int, boolean, boolean, boolean, boolean) - Constructor for class jj2000.j2k.util.CodestreamManipulator

Instantiates a codestream manipulator..

codestreamOffset - Variable in class loci.formats.in.JPEG2000MetadataParser

Offset to first contiguous codestream.

codestreamPixelType - Variable in class loci.formats.in.JPEG2000MetadataParser

Pixel type as specified in the JPEG 2000 codestream..

codeStreamPos - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

The positions of the codestreams in the fileformat

codestreamSizeC - Variable in class loci.formats.in.JPEG2000MetadataParser

Number of channels the image as specified in the JPEG 2000 codestream.

codestreamSizeX - Variable in class loci.formats.in.JPEG2000MetadataParser

Width of the image as specified in the JPEG 2000 codestream.

codestreamSizeY - Variable in class loci.formats.in.JPEG2000MetadataParser

Height of the image as specified in the JPEG 2000 codestream.

CodestreamWriter - Class in jj2000.j2k.codestream.writer

This is the abstract class for writing to a bit stream.

CodestreamWriter(int) - Constructor for class jj2000.j2k.codestream.writer.CodestreamWriter

Allocates this object and initializes the maximum numner of bytes.

codeSymbol(int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This function performs the arithmetic encoding of one symbol.

codeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This function performs the arithmetic encoding of several symbols together.

codingRangeCbCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

codingRangeY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

codingRangeY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

col - Variable in class loci.formats.in.CellVoyagerReader.WellInfo

col - Variable in class loci.formats.in.OperettaReader.Plane

col - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

col - Variable in class loci.poi.hssf.usermodel.HSSFComment

col - Variable in class loci.poi.hssf.util.CellReference

col - Variable in class ome.metakit.ColumnMap

col1 - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor

col2 - Variable in class loci.poi.hssf.usermodel.HSSFClientAnchor

col_fixed_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

col_from - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

upper right hand corner col

col_num - Variable in class mdbtools.libmdb.MdbColumn

col_num_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

col_prec - Variable in class mdbtools.libmdb.MdbColumn

col_scale - Variable in class mdbtools.libmdb.MdbColumn

col_size - Variable in class mdbtools.libmdb.MdbColumn

col_size_offset - Variable in class mdbtools.libmdb.MdbFormatConstants

col_to - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

lower right hand corner col

col_type - Variable in class mdbtools.libmdb.MdbColumn

colAbs - Variable in class loci.poi.hssf.util.CellReference

colapsed - Static variable in class loci.poi.hssf.record.RowRecord

colBreaks - Variable in class loci.poi.hssf.model.Sheet

colCount - Variable in class loci.formats.in.BaseZeissReader

colFrom - Variable in class loci.poi.hssf.util.Region

collapseColInfoRecords(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

collapseColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

collapsed - Static variable in class loci.poi.hssf.record.ColumnInfoRecord

collapseRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

collect - Variable in class mdbtools.libmdb.MdbStatistics

collection - Variable in class loci.formats.in.LeicaHandler

collection - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

COLLECTION_VOLUME - Static variable in class loci.formats.in.CellSensReader

colName - Variable in class loci.formats.in.InCellReader

color - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo

color - Variable in class loci.formats.in.LeicaHandler.ROI

color - Variable in class loci.formats.in.LIFReader.ROI

color - Variable in class loci.formats.in.ZeissCZIReader.Channel

color - Variable in class ome.xml.model.Channel

Color - Class in ome.xml.model.primitives

Primitive type that represents an RGBA color.

Color(Integer) - Constructor for class ome.xml.model.primitives.Color

Color(int, int, int, int) - Constructor for class ome.xml.model.primitives.Color

color - Variable in class ome.xml.model.Well

color16 - Variable in class loci.formats.in.IvisionReader

COLOR_BAR - Static variable in class loci.formats.in.FV1000Reader

COLOR_MAP - Static variable in class loci.formats.in.CanonRawReader

COLOR_MAP - Static variable in class loci.formats.in.DNGReader

COLOR_MAP - Static variable in class loci.formats.in.NikonReader

COLOR_MAP - Static variable in class loci.formats.tiff.IFD

COLOR_MAP_1 - Static variable in class loci.formats.in.MRWReader

COLOR_MAP_2 - Static variable in class loci.formats.in.MRWReader

COLOR_MODE - Static variable in class loci.formats.in.NikonReader

COLOR_MODE_COLORIZED - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_COMPOSITE - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_CUSTOM - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_DEFAULT - Static variable in class loci.plugins.in.ImporterOptions

COLOR_MODE_GRAYSCALE - Static variable in class loci.plugins.in.ImporterOptions

COLOR_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

normal type of black color.

COLOR_RED - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Dark Red color

COLOR_SPACE - Static variable in class loci.formats.in.CellSensReader

COLOR_SPACE - Static variable in class loci.formats.tiff.IFD

COLOR_SPACE_SRGB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ColorSpace" tag.

COLOR_SPACE_UNCALIBRATED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ColorSpace" tag.

colorConvert - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

A TIFFColorConverter object describing the color space of the encoded pixel data, or null.

colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

colorConverter - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

colorCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

ColorDialog - Class in loci.plugins.in

Bio-Formats Importer custom color chooser dialog box.

ColorDialog(ImportProcess) - Constructor for class loci.plugins.in.ColorDialog

colorFormat - Variable in enum ome.jxr.ifd.PixelFormat

colorize - Variable in class loci.plugins.util.BFVirtualStack

Colorizer - Class in loci.plugins.in

Logic for colorizing images.

Colorizer(ImportProcess) - Constructor for class loci.plugins.in.Colorizer

colorMap - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the ColorMap tag.

colorMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

colorMap - Variable in class loci.formats.in.TargaReader

colorModeChoice - Variable in class loci.plugins.in.MainDialog

colorModel - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The image's ColorModel.

colorModel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

colorModel - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

colorModel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

colorModel - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Create a IndexColorModel from the palette box if there is one

colorModel - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

The color model of the image to be compressed.

colorModel - Variable in class loci.formats.codec.CodecOptions

Color model to use when constructing an image (WRITE).

colorPlanes - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

colorPlanes - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

colorResolution - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

COLORS - Variable in class loci.formats.in.CellH5Reader

colors - Variable in class loci.formats.in.ImarisHDFReader

colors - Variable in class loci.formats.in.IMODReader

colors - Variable in class loci.formats.in.NativeND2Reader

colors - Variable in class loci.formats.in.ND2Handler

colorsImportant - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

colorSpace - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

COLORSPACE - Static variable in class loci.formats.in.CellSensReader

colorSpaceNames - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

colorSpaceType - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Color specification

ColorSpecificationBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Color Specification Box of JPEG JP2 file format.

ColorSpecificationBox(byte, byte, byte, int, ICC_Profile) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates a ColorSpecificationBox from the provided data elements.

ColorSpecificationBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates a ColorSpecificationBox from the provided byte array.

ColorSpecificationBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Constructs a ColorSpecificationBox based on the provided org.w3c.dom.Node.

colorsUsed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

colorTables - Variable in class loci.formats.in.GIFReader

colorTableSizes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

COLOUR_SPECIFICATION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

colRelative - Variable in class loci.poi.hssf.record.formula.Area3DPtg

colRelative - Variable in class loci.poi.hssf.record.formula.AreaPtg

colRelative - Variable in class loci.poi.hssf.record.formula.Ref3DPtg

colRelative - Variable in class loci.poi.hssf.record.formula.ReferencePtg

cols - Variable in class loci.formats.in.CellSensReader

colT - Variable in class loci.formats.in.SDTInfo

colTo - Variable in class loci.poi.hssf.util.Region

column - Variable in class loci.formats.in.FlexReader.FlexFile

column - Variable in class loci.formats.in.OMEXMLReader.BinData

column - Variable in class loci.formats.tools.AmiraParameters

column - Variable in class loci.poi.hssf.record.formula.AreaPtg

column - Variable in class loci.poi.hssf.record.formula.ReferencePtg

column - Variable in class mdbtools.dbengine.sql.FQColumn

Column - Class in ome.metakit

Class representing a column in a Metakit database file.

Column(String) - Constructor for class ome.metakit.Column

Construct a new column from the given string representation.

column - Variable in class ome.xml.model.Well

COLUMN_NAMING_CONVENTION - Static variable in class ome.specification.XMLMockObjects

The default naming convention for columns.

ColumnComparator - Class in mdbtools.dbengine

Compare the values from a column in two rows

ColumnComparator() - Constructor for class mdbtools.dbengine.ColumnComparator

ColumnInfoRecord - Class in loci.poi.hssf.record

Title: ColumnInfo Record

ColumnInfoRecord() - Constructor for class loci.poi.hssf.record.ColumnInfoRecord

ColumnInfoRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ColumnInfoRecord

Constructs a ColumnInfo record and sets its fields appropriately

ColumnInfoRecordsAggregate - Class in loci.poi.hssf.record.aggregates

ColumnInfoRecordsAggregate() - Constructor for class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

ColumnMap - Class in ome.metakit

Class representating a column mapping in a Metakit database file.

ColumnMap(Column, RandomAccessInputStream, int) - Constructor for class ome.metakit.ColumnMap

columnNames - Variable in class mdbtools.dbengine.Tests.SimpleDataSourceTable

columnNamingConvention - Variable in class ome.xml.model.Plate

COLUMNS - Static variable in class loci.formats.gui.DataConverter

COLUMNS - Static variable in class loci.formats.in.DicomReader

columns - Variable in class loci.poi.hssf.model.Sheet

columns - Variable in class mdbtools.dbengine.sql.Select

columns - Variable in class mdbtools.libmdb.MdbTableDef

columns - Static variable in class mdbtools.tests.ColumnTest

columns - Variable in class ome.metakit.MetakitReader

COLUMNS - Static variable in class ome.specification.XMLMockObjects

The default number of columns for a plate.

columns - Variable in class ome.xml.model.Plate

ColumnTest - Class in mdbtools.tests

ColumnTest() - Constructor for class mdbtools.tests.ColumnTest

com - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the COM marker segments found in main and tile-part headers.

COM - Static variable in interface jj2000.j2k.codestream.Markers

Comment (COM): 0xFF64

COM - Static variable in class loci.formats.codec.LosslessJPEGCodec

com.luratech.lwf - package com.luratech.lwf

com.sun.media.imageio.plugins.bmp - package com.sun.media.imageio.plugins.bmp

Package containing the public classes used by the Sun BMP plug-in for the Image I/O Framework.

com.sun.media.imageio.plugins.jpeg2000 - package com.sun.media.imageio.plugins.jpeg2000

Package containing the public classes used by the Sun JPEG 2000 plug-in for the Image I/O Framework.

com.sun.media.imageio.plugins.pnm - package com.sun.media.imageio.plugins.pnm

Package containing the public classes used by the Sun PNM plug-in for the Image I/O Framework.

com.sun.media.imageio.plugins.tiff - package com.sun.media.imageio.plugins.tiff

Package containing the public classes used by the TIFF plug-in for the Image I/O Framework.

com.sun.media.imageio.stream - package com.sun.media.imageio.stream

Provides ImageInputStream and ImageOutputStream classes for use with the Java Image I/O Framework.

com.sun.media.imageioimpl.common - package com.sun.media.imageioimpl.common

com.sun.media.imageioimpl.plugins.bmp - package com.sun.media.imageioimpl.plugins.bmp

com.sun.media.imageioimpl.plugins.clib - package com.sun.media.imageioimpl.plugins.clib

com.sun.media.imageioimpl.plugins.gif - package com.sun.media.imageioimpl.plugins.gif

com.sun.media.imageioimpl.plugins.jpeg - package com.sun.media.imageioimpl.plugins.jpeg

com.sun.media.imageioimpl.plugins.jpeg2000 - package com.sun.media.imageioimpl.plugins.jpeg2000

com.sun.media.imageioimpl.plugins.pcx - package com.sun.media.imageioimpl.plugins.pcx

com.sun.media.imageioimpl.plugins.png - package com.sun.media.imageioimpl.plugins.png

com.sun.media.imageioimpl.plugins.pnm - package com.sun.media.imageioimpl.plugins.pnm

com.sun.media.imageioimpl.plugins.raw - package com.sun.media.imageioimpl.plugins.raw

com.sun.media.imageioimpl.plugins.tiff - package com.sun.media.imageioimpl.plugins.tiff

com.sun.media.imageioimpl.plugins.wbmp - package com.sun.media.imageioimpl.plugins.wbmp

com.sun.media.imageioimpl.stream - package com.sun.media.imageioimpl.stream

com.sun.media.jai.imageioimpl - package com.sun.media.jai.imageioimpl

com.sun.media.jai.operator - package com.sun.media.jai.operator

Provides JAI operations which read and write images using the Java Image I/O Framework.

COM_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for COM marker segment found

ComboFileFilter - Class in loci.formats.gui

A file filter that recognizes files from a union of other filters.

ComboFileFilter(FileFilter[], String) - Constructor for class loci.formats.gui.ComboFileFilter

Constructs a new filter from a list of other filters.

COMMENT - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

comment - Variable in class loci.formats.in.FluoviewReader

comment - Variable in class loci.formats.in.MicromanagerReader.Position

comment - Variable in class loci.formats.in.QuesantReader

comment - Variable in class loci.poi.hssf.usermodel.HSSFCell

COMMENT_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer

COMMENT_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer

CommentAnnotation - Class in ome.xml.model

CommentAnnotation() - Constructor for class ome.xml.model.CommentAnnotation

Default constructor.

CommentAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.CommentAnnotation

Constructs CommentAnnotation recursively from an XML DOM tree.

CommentAnnotation(CommentAnnotation) - Constructor for class ome.xml.model.CommentAnnotation

Copy constructor.

commentAnnotations - Variable in class ome.xml.model.StructuredAnnotations

commentDelimiter - Variable in class loci.common.IniParser

comments - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

comments - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

comments - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

The comments.

comments - Variable in class loci.formats.in.JPEG2000MetadataParser

List of comments stored in the file.

comments - Variable in class loci.formats.in.SVSReader

CommentShape - Class in loci.poi.hssf.model

Represents a cell comment.

CommentShape(HSSFComment, int) - Constructor for class loci.poi.hssf.model.CommentShape

Creates the low-level records for a comment.

commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Writes the header data to the bit stream, if it has not been already done.

commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Writes the header data in the codestream and actualize ndata with the header length.

COMMON_PART - Static variable in enum ome.jxr.ifd.PixelFormat

commonLogFormatted(int, String, Object[]) - Method in class loci.poi.util.POILogger

CommonObjectDataSubRecord - Class in loci.poi.hssf.record

The common object data record is used to store all common preferences for an excel object.

CommonObjectDataSubRecord() - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord

CommonObjectDataSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord

Constructs a CommonObjectData record and sets its fields appropriately.

CommonsLogger - Class in loci.poi.util

A logger class that strives to make it as easy as possible for developers to write log calls, while simultaneously making those calls as cheap as possible by performing lazy evaluation of the log message.

CommonsLogger() - Constructor for class loci.poi.util.CommonsLogger

comp - Variable in class jj2000.j2k.roi.encoder.ROI

The components for which the ROI is relevant

comp - Variable in class loci.formats.gui.CacheIndicator

COMP_POS_RES_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType

The bit stream is Component/Position/Resolution/Layer progressive : 4

COMPANION_SUFFIXES - Static variable in class loci.formats.in.TiffReader

companionFile - Variable in class loci.formats.in.TiffReader

companionFiles - Variable in class loci.formats.in.DicomReader

compare(Object, Object) - Method in class loci.formats.cache.CacheStrategy

Default comparator orders dimensional positions based on distance from the current position, taking into account axis priorities and planar ordering.

compare(String, String) - Method in class loci.formats.in.MetamorphTiffReader.NumericComparator

compare(Object, Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

compare method.

compare(Comparable, Comparable) - Static method in class loci.poi.util.BinaryTree

Compare two objects

compareTo(Object) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Compares this TIFFField with another TIFFField by comparing the tags.

compareTo(Object) - Method in class loci.formats.gui.ComboFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.gui.ExtensionFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.gui.FormatFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.gui.NoExtensionFileFilter

Compares two FileFilter objects alphanumerically.

compareTo(Object) - Method in class loci.formats.tiff.TiffIFDEntry

compareTo(TiffRational) - Method in class loci.formats.tiff.TiffRational

Compares this object with the specified object for order.

compareTo(Object) - Method in class loci.plugins.config.FormatEntry

compareTo(Object) - Method in class loci.plugins.config.LibraryEntry

compareTo(ThumbLoader.SeriesInfo) - Method in class loci.plugins.in.ThumbLoader.SeriesInfo

compareTo(Object) - Method in class loci.poi.hpsf.Section.PropertyListEntry

Compares this Section.PropertyListEntry with another one by their offsets.

compareTo(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

compareTo(Object) - Method in class loci.poi.hssf.record.BlankRecord

compareTo(Object) - Method in class loci.poi.hssf.record.BoolErrRecord

compareTo(Object) - Method in class loci.poi.hssf.record.FormulaRecord

compareTo(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord

compareTo(Object) - Method in class loci.poi.hssf.record.NumberRecord

compareTo(Object) - Method in class loci.poi.hssf.record.RowRecord

compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString

compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Compares one rich text string to another.

compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow

compareTo(Region) - Method in class loci.poi.hssf.util.Region

Compares that the given region is the same less than or greater than this region.

compareTo(Object) - Method in class loci.poi.hssf.util.Region

compareTo(Angle) - Method in class ome.units.quantity.Angle

compareTo(ElectricPotential) - Method in class ome.units.quantity.ElectricPotential

compareTo(Frequency) - Method in class ome.units.quantity.Frequency

compareTo(Length) - Method in class ome.units.quantity.Length

compareTo(Power) - Method in class ome.units.quantity.Power

compareTo(Pressure) - Method in class ome.units.quantity.Pressure

compareTo(Temperature) - Method in class ome.units.quantity.Temperature

compareTo(Time) - Method in class ome.units.quantity.Time

compareTokens(String[], int, String[], int) - Method in class loci.formats.in.ICSReader

compatibility - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

compDef - Variable in class jj2000.j2k.ModuleSpec

The default value for each component.

compH - Variable in class jj2000.j2k.image.Tiler

The component height in the current active tile, for each component

compHeight - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

Component heights

compIdx - Variable in class jj2000.j2k.image.ImgDataJoiner

The component index associated with each ImgData

compImageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

complete - Variable in class jj2000.j2k.util.ISRandomAccessIO

complete() - Method in class loci.common.CBZip2InputStream

completedComps - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The queue of completed compressors, for each component.

COMPLEX - Static variable in class loci.formats.in.CellSensReader

COMPLEX - Static variable in class loci.formats.in.ZeissCZIReader

COMPLEX - Static variable in class loci.poi.ddf.EscherShapePathProperty

COMPLEX_FLOAT - Static variable in class loci.formats.in.ZeissCZIReader

complexData - Variable in class loci.poi.ddf.EscherComplexProperty

compMainDefDecompType - Variable in class jj2000.j2k.wavelet.WTDecompSpec

The component main default decomposition, for each component.

compMainDefLevels - Variable in class jj2000.j2k.wavelet.WTDecompSpec

The component main default decomposition levels, for each component

COMPONENT_HEIGHT - Static variable in class loci.formats.gui.CacheIndicator

COMPONENT_LOT_NUMBER - Static variable in class ome.specification.XMLMockObjects

The default lot number of a component of a microscope.

COMPONENT_MANUFACTURER - Static variable in class ome.specification.XMLMockObjects

The default manufacturer of a component of a microscope.

COMPONENT_MAPPING_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

COMPONENT_MODEL - Static variable in class ome.specification.XMLMockObjects

The default model of a component of a microscope.

COMPONENT_SERIAL_NUMBER - Static variable in class ome.specification.XMLMockObjects

The default serial number of a component of a microscope.

COMPONENT_WIDTH - Static variable in class loci.formats.gui.CacheIndicator

ComponentMappingBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Color Specification Box of JPEG JP2 file format.

ComponentMappingBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Constructs a ComponentMappingBox from the provided content byte array.

ComponentMappingBox(short[], byte[], byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Constructs a ComponentMappingBox from the provided component mapping.

ComponentMappingBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Constructs a ComponentMappingBox based on the provided org.w3c.dom.Node.

ComponentMode - Enum in ome.jxr.image

Enumeration of available image bit depth types.

ComponentMode(int) - Constructor for enum ome.jxr.image.ComponentMode

components - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

The data elements.

components - Variable in class loci.poi.poifs.filesystem.POIFSDocumentPath

COMPONENTS_CONFIGURATION - Static variable in class loci.formats.tiff.IFD

COMPONENTS_CONFIGURATION_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_CB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_CR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_DOES_NOT_EXIST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_G - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_R - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

COMPONENTS_CONFIGURATION_Y - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ComponentsConfiguration" tag.

componentTransformation - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies to utilize the component transformation with some tiles.

componentTransformation - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies to utilize the component transformation with some tiles.

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Composes the content byte array from the data elements.

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

composeFormula(FormulaRecord) - Method in class loci.poi.hssf.dev.FormulaViewer

composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Append newString to the end of oldString.

composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Append newString to the end of oldString.

COMPR_MASKS - Static variable in class loci.formats.codec.LZWCodec

Masks for writing bits in compressor.

compress(byte[], int, int) - Method in class com.sun.media.imageioimpl.common.LZWCompressor

compress(byte[], CodecOptions) - Method in class loci.formats.codec.Base64Codec

compress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec

2D data block encoding default implementation.

compress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec

Compresses a block of data.

compress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec

Compresses a block of data.

compress(byte[], CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set: width height bitsPerSample channels interleaved littleEndian lossless

compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEGCodec

The CodecOptions parameter should have the following fields set: width height channels bitsPerSample interleaved littleEndian signed

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZOCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZWCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.MJPBCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSRLECodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSVideoCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.NikonCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.PackbitsCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.RPZACodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.TargaRLECodec

compress(byte[], CodecOptions) - Method in class loci.formats.codec.ZlibCodec

compress(byte[]) - Method in class loci.formats.out.OMEXMLWriter

Compress the given byte array using the current codec.

compress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Encodes a strip of data.

compress(byte[]) - Static method in class loci.poi.ddf.EscherBlipWMFRecord

Compress the contents of the provided array

compress(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Compress the uncompressed source image associated with this compressor instance and output a JPEG image to the given destination buffer.

compress(int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Compress the uncompressed source image associated with this compressor instance and return a buffer containing a JPEG image.

compress(BufferedImage, byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Compress the uncompressed source image stored in srcImage and output a JPEG image to the given destination buffer.

compress(BufferedImage, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Compress the uncompressed source image stored in srcImage and return a buffer containing a JPEG image.

compress(byte[], int, int, int, int, byte[], int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

compress(int[], int, int, int, int, byte[], int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

compressBuffer(int, byte[], int, int, int, int) - Method in class loci.formats.out.JPEG2000Writer

Compresses the buffer.

compressCodeBlock(int, CBlkRateDistStats, CBlkWTData, MQCoder, BitToByteOutput, ByteOutputBuffer, int[], double[], int[], boolean[], int[], int[], int, boolean, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Compresses the code-block in 'srcblk' and puts the results in 'ccb', using the specified options and temporary storage.

CompressDecompressTest - Class in loci.tests.testng

Tests the various codec used to compress and decompress data.

CompressDecompressTest() - Constructor for class loci.tests.testng.CompressDecompressTest

compressed - Variable in class loci.formats.in.NAFReader

compressed - Variable in class loci.formats.in.OpenlabReader.PlaneInfo

compressed - Variable in class loci.formats.in.PSDReader

compressed - Variable in class loci.formats.in.SBIGReader

compressed - Variable in class loci.formats.in.TargaReader

COMPRESSED_BITS_PER_PIXEL - Static variable in class loci.formats.tiff.IFD

compressedSize - Variable in class loci.formats.in.AmiraReader.HxRLE

compressedSize - Variable in class loci.formats.in.AmiraReader.HxZip

compressedSize - Variable in class org.libjpegturbo.turbojpeg.TJCompressor

compressedTiles - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache

compression - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the Compression tag.

compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

compression - Variable in enum loci.formats.codec.CompressionType

The compression used.

compression - Variable in class loci.formats.FormatWriter

Current compression type.

compression - Variable in class loci.formats.in.AmiraReader

compression - Variable in class loci.formats.in.APNGReader

compression - Variable in class loci.formats.in.BMPReader

Compression type

compression - Variable in class loci.formats.in.LiFlimReader

compression - Variable in class loci.formats.in.OBFReader.Stack

compression - Variable in class loci.formats.in.OMEXMLReader

compression - Variable in class loci.formats.in.PhotoshopTiffReader

compression - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

COMPRESSION - Static variable in class loci.formats.tiff.IFD

COMPRESSION - Static variable in class loci.tests.testng.TiffWriterTest

The compression levels to test.

compression - Variable in class ome.xml.model.BinData

Compression - Enum in ome.xml.model.enums

Compression(String) - Constructor for enum ome.xml.model.enums.Compression

compression - Variable in class ome.xml.model.External

COMPRESSION_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the Compression attribute.

COMPRESSION_CCITT_RLE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_CCITT_T_4 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_CCITT_T_6 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_DEFLATE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_GZIP - Static variable in class loci.formats.in.LiFlimReader

COMPRESSION_J2K - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_J2K_LOSSY - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_JPEG - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_KEY - Static variable in class loci.formats.in.LiFlimReader

COMPRESSION_LZW - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_LZW - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_NONE - Static variable in class loci.formats.in.LiFlimReader

COMPRESSION_OLD_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_PACKBITS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

COMPRESSION_SUFFIXES - Static variable in class loci.formats.FormatHandler

Suffixes for supported compression types.

COMPRESSION_UNCOMPRESSED - Static variable in class loci.formats.out.TiffWriter

COMPRESSION_ZLIB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "Compression" tag.

CompressionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Compression.

CompressionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CompressionEnumHandler

compressionNumbers - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Compression tag values for known compression types.

compressionTagValue - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The value to be assigned to the TIFF Compression tag in the TIFF image metadata.

compressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The name of the compression type supported by this compressor.

compressionType - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

compressionType - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

compressionType - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

CompressionType - Enum in loci.formats.codec

An enumeration of compression types.

CompressionType(int, String) - Constructor for enum loci.formats.codec.CompressionType

Default constructor.

compressionType - Variable in class loci.formats.in.CellSensReader

compressionTypeNames - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants

compressionTypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Known TIFF compression types.

compressionTypes - Variable in class loci.formats.FormatWriter

Available compression types.

compressionTypes - Variable in class loci.formats.ImageWriter

Compression types for all file format writers.

compressor - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

compressor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

comps - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

Component mapping

compSize - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

CompTransfSpec - Class in jj2000.j2k.image

This class extends ModuleSpec class in order to hold tile specifications for component transformation

CompTransfSpec(int, int, byte) - Constructor for class jj2000.j2k.image.CompTransfSpec

Constructs an empty 'CompTransfSpec' with specified number of tile and components.

computeAxisLengths() - Method in class loci.formats.FileStitcher

Computes axis length arrays, and total axis lengths.

computedBlockCRC - Variable in class loci.common.CBZip2InputStream

computedCombinedCRC - Variable in class loci.common.CBZip2InputStream

computeIndices(int) - Method in class loci.formats.FileStitcher

Gets the file index, and image index into that file, corresponding to the given global image index.

computeLength(ColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Computes the length of this box from the provided ColorModel.

computeLength(byte, ICC_Profile) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Computes the length of this box when profile is present.

computeLength(IndexColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Compute the length of this box.

computeLength(IIOMetadataNode) - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter

computeNameAndLocation() - Method in class loci.plugins.in.ImportProcess

Initializes the idName and idLoc derived values.

computePhysicalSize(int, String, String) - Method in class loci.formats.in.VarianFDFReader

Return the physical size of a pixel, in microns, along an arbitrary axis based on the supplied physical and pixel lengths of the axis.

computeRegions(Rectangle, Dimension, ImageWriteParam) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Compute the source region and destination dimensions taking any parameter settings into account.

computeRegionsWrapper(ImageReadParam, boolean, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Wrapper for the protected method computeRegions.

computeRegionsWrapper(ImageReadParam, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Wrapper for the protected method computeRegions.

computeSeriesLabels(IFormatReader) - Method in class loci.plugins.in.ImportProcess

computeSizeT(int) - Method in class loci.formats.in.PrairieReader

Scans the parsed metadata to determine the number of actual time points versus the number of actual stage positions.

computeVariableTimeInterval(IMetadata, int) - Method in class loci.plugins.in.Calibrator

compW - Variable in class jj2000.j2k.image.Tiler

The component width in the current active tile, for each component

compWidth - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

Component widths

Concat() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a Concatination

CONCAT - Static variable in class loci.poi.hssf.record.formula.ConcatPtg

ConCat - Class in mdbtools.dbengine.functions

ConCat() - Constructor for class mdbtools.dbengine.functions.ConCat

concatenate(List<ImagePlus>) - Method in class loci.plugins.in.Concatenator

Concatenates the list of images as appropriate.

concatenate(List<ImagePlus>) - Method in class loci.plugins.in.ImagePlusReader

concatenateBox - Variable in class loci.plugins.in.MainDialog

concatenateTokens(String[], int, int) - Method in class loci.formats.in.ICSReader

Concatenator - Class in loci.plugins.in

Logic for concatenating multiple images together.

Concatenator() - Constructor for class loci.plugins.in.Concatenator

ConcatPtg - Class in loci.poi.hssf.record.formula

ConcatPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ConcatPtg

ConcatPtg() - Constructor for class loci.poi.hssf.record.formula.ConcatPtg

conceal(DataBlk, int) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Conceals decoding errors detected in the last bit-plane.

CONCURRENCY_PROP_NAME - Static variable in class jj2000.j2k.util.ThreadPool

The name of the property that sets the concurrency level: jj2000.j2k.util.ThreadPool.concurrency

Condition - Class in mdbtools.dbengine.sql

Condition() - Constructor for class mdbtools.dbengine.sql.Condition

config - Variable in class loci.formats.in.PrairieMetadata

Key/value pairs from CFG and/or ENV files.

config - Variable in class loci.tests.testng.FormatReaderTest

config - Static variable in class loci.tests.testng.FormatWriterTest

configDir - Variable in class loci.tests.testng.ConfigurationTree

Base directory on the file system associated with the configuration files.

configFile - Variable in class loci.tests.testng.Configuration

configTree - Static variable in class loci.tests.testng.FormatReaderTest

Configuration tree structure containing dataset metadata.

configTree - Static variable in class loci.tests.testng.FormatWriterTest

Configuration tree structure containing dataset metadata.

Configuration - Class in loci.tests.testng

Configuration(String, String) - Constructor for class loci.tests.testng.Configuration

Configuration(IFormatReader, String) - Constructor for class loci.tests.testng.Configuration

ConfigurationTree - Class in loci.tests.testng

Stores configuration data about files in a directory structure.

ConfigurationTree(String) - Constructor for class loci.tests.testng.ConfigurationTree

Constructs a new configuration tree rooted at the given directory in the file system.

ConfigurationTree(String, String) - Constructor for class loci.tests.testng.ConfigurationTree

Constructs a new configuration tree rooted at the given directory in the file system with a custom configuration directory.

ConfigWindow - Class in loci.plugins.config

A window for managing configuration of the Bio-Formats plugins.

ConfigWindow() - Constructor for class loci.plugins.config.ConfigWindow

confirmFileType() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Checks that the RandomAccessIO begins with 'P5'

conn - Variable in class loci.common.URLHandle

Socket underlying this stream

Constants - Class in loci.common

Constants that are used within many classes in loci.common.

Constants() - Constructor for class loci.common.Constants

Constants - Class in loci.poi.hpsf

Defines constants of general use.

Constants() - Constructor for class loci.poi.hpsf.Constants

Constants - Class in mdbtools.libmdb

copied from mdbtools.h

Constants() - Constructor for class mdbtools.libmdb.Constants

construct(int, List) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

constructDialog() - Method in class loci.plugins.in.ColorDialog

constructDialog() - Method in class loci.plugins.in.CropDialog

constructDialog() - Method in class loci.plugins.in.FilePatternDialog

constructDialog() - Method in class loci.plugins.in.IdDialog

constructDialog() - Method in class loci.plugins.in.ImporterDialog

constructDialog() - Method in class loci.plugins.in.LocationDialog

constructDialog() - Method in class loci.plugins.in.MainDialog

constructDialog() - Method in class loci.plugins.in.MemoryDialog

constructDialog() - Method in class loci.plugins.in.RangeDialog

constructDialog() - Method in class loci.plugins.in.SeriesDialog

constructDialog() - Method in class loci.plugins.in.SwapDialog

constructDialog() - Method in class loci.plugins.in.UpgradeDialog

constructImage(int, int, int, int, boolean, boolean, DataBuffer) - Static method in class loci.formats.gui.AWTImageTools

Creates an image with the given DataBuffer.

constructImage(int, int, int, int, boolean, boolean, DataBuffer, ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Creates an image with the given DataBuffer.

constructImageTitle(IFormatReader, String, String, boolean) - Method in class loci.plugins.in.ImagePlusReader

constructLoader() - Static method in class loci.formats.gui.LegacyQTTools

constructorCache - Static variable in class loci.common.services.ServiceFactory

Constructor cache.

constructSliceLabel(int, IFormatReader, IMetadata, int, int, int, int) - Method in class loci.plugins.in.ImagePlusReader

consumer - Variable in class loci.formats.codec.JPEGTileDecoder

CONTAINER_TYPES - Static variable in class loci.formats.in.NativeQTReader

List of identifiers for each container atom.

contains(int, short) - Method in class loci.poi.hssf.util.Region

Answers: "is the row/column inside this range?"

contains(double) - Method in class loci.poi.util.DoubleList

Returns true if this list contains the specified element.

contains(int) - Method in class loci.poi.util.IntList

Returns true if this list contains the specified element.

contains(short) - Method in class loci.poi.util.ShortList

Returns true if this list contains the specified element.

contains(Object) - Method in class ome.xml.model.ReferenceList

containsAll(DoubleList) - Method in class loci.poi.util.DoubleList

Returns true if this list contains all of the elements of the specified collection.

containsAll(IntList) - Method in class loci.poi.util.IntList

Returns true if this list contains all of the elements of the specified collection.

containsAll(ShortList) - Method in class loci.poi.util.ShortList

Returns true if this list contains all of the elements of the specified collection.

containsAll(Collection<?>) - Method in class ome.xml.model.ReferenceList

containsKey(Object) - Method in class loci.poi.util.BinaryTree

Returns true if this map contains a mapping for the specified key.

containsPoint(int, int) - Method in class loci.common.Region

Returns true if the point specified by the given X and Y coordinates is contained within this region.

containsTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Determines whether a TIFF field with the given tag number is contained in this directory.

containsValue(int[], int) - Static method in class loci.common.DataTools

Returns true if the given value is contained in the given array.

containsValue(Object) - Method in class loci.poi.util.BinaryTree

Returns true if this map maps one or more keys to the specified value.

contentFileType - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

contentGUID - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

contents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources

contents - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources

context - Variable in class loci.formats.in.BaseZeissReader.Tag

CONTIGUOUS_CODESTREAM_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

ContinueRecord - Class in loci.poi.hssf.record

Title: Continue Record - Helper class used primarily for SST Records

ContinueRecord() - Constructor for class loci.poi.hssf.record.ContinueRecord

default constructor

ContinueRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ContinueRecord

Main constructor -- kinda dummy because we don't validate or fill fields

CONTRAST - Static variable in class loci.formats.in.CellSensReader

CONTRAST - Static variable in class loci.formats.tiff.IFD

CONTRAST_BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader

CONTRAST_HARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Contrast" tag.

CONTRAST_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Contrast" tag.

CONTRAST_SOFT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Contrast" tag.

CONTRAST_TARGET - Static variable in class loci.formats.in.CellSensReader

contrastMethod - Variable in class ome.xml.model.Channel

ContrastMethod - Enum in ome.xml.model.enums

ContrastMethod(String) - Constructor for enum ome.xml.model.enums.ContrastMethod

ContrastMethodEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ContrastMethod.

ContrastMethodEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

ControlPtg - Class in loci.poi.hssf.record.formula

ControlPtg() - Constructor for class loci.poi.hssf.record.formula.ControlPtg

ConversionTest - Class in loci.tests.testng

ConversionTest() - Constructor for class loci.tests.testng.ConversionTest

ConversionTest.Plane - Class in loci.tests.testng

ConversionTest.Plane(byte[], boolean, boolean, int, String) - Constructor for class loci.tests.testng.ConversionTest.Plane

convert(String, String) - Static method in class loci.formats.FormatTools

Convenience method for converting the specified input file to the specified output file.

convert(IFormatReader, IFormatWriter, String) - Static method in class loci.formats.FormatTools

Convenience method for writing all of the images and metadata obtained from the specified IFormatReader into the specified IFormatWriter.

convert - Variable in class loci.formats.gui.DataConverter

convert(long, RandomAccessInputStream, int, int, int) - Static method in class loci.poi.poifs.storage.DocumentBlock

convert a single long array into an array of DocumentBlock instances

convert(byte[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

convert a single long array into an array of SmallDocumentBlock instances

convert(BlockWritable[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

Factory for creating SmallDocumentBlocks from DocumentBlocks

ConvertAnchor - Class in loci.poi.hssf.model

$Id: ConvertAnchor.java 562536 2007-08-03 18:09:41Z yegor $

ConvertAnchor() - Constructor for class loci.poi.hssf.model.ConvertAnchor

convertBooleanAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all BooleanAnnotation attributes.

convertColStringToNum(String) - Method in class loci.poi.hssf.util.CellReference

takes in a column reference portion of a CellRef and converts it from ALPHA-26 number format to 0-based base 10.

convertCommentAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all CommentAnnotation attributes.

convertDatasets(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Dataset attributes.

convertDate(long, int) - Static method in class loci.common.DateTools

Converts the given timestamp into an ISO8601 date.

convertDate(long, int, String) - Static method in class loci.common.DateTools

Converts the given timestamp into a date string with the given format.

convertDate(long, int, String, boolean) - Static method in class loci.common.DateTools

Converts the given timestamp into a date string with the given format.

convertDoubleAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all DoubleAnnotation attributes.

convertedReader - Static variable in class loci.tests.testng.FormatWriterTest

Reader for converted files.

converter - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

converter2 - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

convertExperimenterGroups(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all ExperimenterGroup attributes.

convertExperimenters(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Experimenter attributes.

convertExperiments(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Experiment attributes.

convertFactor - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The value by which the absolute value of the data has to be divided in order to get the real absolute value.

convertFileAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all FileAnnotation attributes.

convertFromExpMantissa(int) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Converts the exponent-mantissa representation to its floating-point value.

convertGroup(HSSFShapeGroup, EscherContainerRecord, Map) - Method in class loci.poi.hssf.record.EscherAggregate

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Creates a default image metadata object and merges in the supplied metadata.

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

convertImages(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Image attributes.

convertInstruments(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Instrument attributes.

convertLabelRecords(List, int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

This is basically a kludge to deal with the now obsolete Label records.

convertLightSources(MetadataRetrieve, MetadataStore, int) - Static method in class loci.formats.meta.MetadataConverter

Convert all LightSource attributes for the given instrument.

convertListAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all ListAnnotation attributes.

convertLongAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all LongAnnotation attributes.

convertMapAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all MapAnnotation attributes.

convertMetadata(String, IIOMetadata, IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Merges inData into outData.

convertMetadata(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Copies information from a metadata retrieval object (source) into a metadata store (destination).

convertMetadata(String, MetadataStore) - Method in interface loci.formats.services.OMEXMLService

Converts information from an OME-XML string (source) into a metadata store (destination).

convertMetadata(MetadataRetrieve, MetadataStore) - Method in interface loci.formats.services.OMEXMLService

Copies information from a metadata retrieval object (source) into a metadata store (destination).

convertMetadata(String, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl

convertMetadata(MetadataRetrieve, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl

convertNativeImageMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Converts a native com_sun_media_imageio_plugins_tiff_image_1.0 tree to a TIFFImageMetadata object.

convertNumToColString(int) - Static method in class loci.poi.hssf.util.CellReference

takes in a 0-based base-10 column and returns a ALPHA-26 representation

convertObjectToString(Object) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Converts the provided object to String

convertPatriarch(HSSFPatriarch) - Method in class loci.poi.hssf.record.EscherAggregate

convertPixelType(int) - Method in class loci.formats.in.CellSensReader

convertPixelType(int) - Method in class loci.formats.in.JPEG2000MetadataParser

convertPixelType(int) - Method in class loci.formats.in.TillVisionReader

convertPixelType(int) - Method in class loci.formats.in.ZeissCZIReader

convertPlates(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Plate attributes.

convertProjects(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Project attributes.

convertRenderedImage(RenderedImage) - Static method in class loci.formats.gui.AWTImageTools

Converts a java.awt.image.RenderedImage into a java.awt.image.BufferedImage.

convertROIs(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all ROI attributes.

convertRootAttributes(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all top-level attributes.

convertScreens(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all Screen attributes.

convertShapes(HSSFShapeContainer, EscherContainerRecord, Map) - Method in class loci.poi.hssf.record.EscherAggregate

convertSharedFormulaRecord(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord

Creates a non shared formula from the shared formula counter part

convertStandardImageMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Converts a standard javax_imageio_1.0 tree to a TIFFImageMetadata object.

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Creates a default stream metadata object and merges in the supplied metadata.

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

convertTagAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all TagAnnotation attributes.

convertTermAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all TermAnnotation attributes.

convertTimestampAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all TimestampAnnotation attributes.

convertTo8Bit(short[][]) - Method in class loci.plugins.util.ImageProcessorReader

convertToBlockCount(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

convertToByte(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

convertToEscherRecords(int, int, byte[]) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

convertToExpMantissa(float) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Converts the floating point value to its exponent-mantissa representation.

convertToFloat() - Method in class loci.plugins.util.RecordedImageProcessor

convertToProperties(ListManagedBlock[]) - Static method in class loci.poi.poifs.property.PropertyFactory

Convert raw data blocks to an array of Property's

convertToRGB() - Method in class loci.plugins.util.RecordedImageProcessor

convertToShort(boolean) - Method in class loci.plugins.util.RecordedImageProcessor

convertUserModelToRecords() - Method in class loci.poi.hssf.record.EscherAggregate

convertValue(Number, Unit<Q>) - Method in class ome.units.unit.Unit

convertXMLAnnotations(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter

Convert all XMLAnnotation attributes.

convolve(float[], int, int) - Method in class loci.plugins.util.RecordedImageProcessor

convolve3x3(int[]) - Method in class loci.plugins.util.RecordedImageProcessor

COOKIE - Static variable in class loci.formats.in.IM3Reader

First 4 bytes of file is "1985"

COOLING_ON - Static variable in class loci.formats.in.CellSensReader

coordinate - Variable in class loci.formats.in.CellSensReader.TileCoordinate

coordinates - Variable in class loci.formats.in.BaseZeissReader

CoordInfo - Class in jj2000.j2k.codestream

This class is used to store the coordinates of objects such as code-blocks or precincts.

CoordInfo(int, int, int, int) - Constructor for class jj2000.j2k.codestream.CoordInfo

Constructor.

CoordInfo() - Constructor for class jj2000.j2k.codestream.CoordInfo

Empty contructor

copy(byte[], int, int, byte[], int) - Static method in class loci.poi.hpsf.Util

Copies a part of a byte array into another byte array.

copy(byte[], int, int) - Static method in class loci.poi.hpsf.Util

Copies bytes from a source byte array into a new byte array.

copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

copyAttributes(HSSFFont, AttributedString, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Copy text attributes from the supplied HSSFFont to Java2D AttributedString

copyBinDataList() - Method in class ome.xml.model.Mask

copyBinDataList() - Method in class ome.xml.model.Pixels

copyBits(ImageProcessor, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

copyBooleanAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyChannelList() - Method in class ome.xml.model.Pixels

copyColor(BinaryTree.Node, BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

copy the color from one node to another, dealing with the fact that one or both nodes may, in fact, be null

copyColor(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree.Node

make this node the same color as another

copyCommentAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Copies an arbitrary rectangular region of the RenderedImage into a caller-supplied WritableRaster.

copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

copyDatasetList() - Method in class ome.xml.model.OME

copyDetectorList() - Method in class ome.xml.model.Instrument

copyDichroicList() - Method in class ome.xml.model.Instrument

copyDoubleAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyExperimenterGroupList() - Method in class ome.xml.model.OME

copyExperimenterList() - Method in class ome.xml.model.OME

copyExperimentList() - Method in class ome.xml.model.OME

copyFileAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyFilterList() - Method in class ome.xml.model.Instrument

copyFilterSetList() - Method in class ome.xml.model.Instrument

copyImageList() - Method in class ome.xml.model.OME

copyInstrumentList() - Method in class ome.xml.model.OME

copyInt(byte[], int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Copies that four bytes of an integer into the byte array.

copyLightSourceList() - Method in class ome.xml.model.Instrument

copyLightSourceSettingsList() - Method in class ome.xml.model.MicrobeamManipulation

copyLinkedAnnotationList() - Method in class ome.xml.model.Annotation

copyLinkedAnnotationList() - Method in class ome.xml.model.Channel

copyLinkedAnnotationList() - Method in class ome.xml.model.Dataset

copyLinkedAnnotationList() - Method in class ome.xml.model.Detector

copyLinkedAnnotationList() - Method in class ome.xml.model.Dichroic

copyLinkedAnnotationList() - Method in class ome.xml.model.Experimenter

copyLinkedAnnotationList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedAnnotationList() - Method in class ome.xml.model.Filter

copyLinkedAnnotationList() - Method in class ome.xml.model.Image

copyLinkedAnnotationList() - Method in class ome.xml.model.Instrument

copyLinkedAnnotationList() - Method in class ome.xml.model.LightPath

copyLinkedAnnotationList() - Method in class ome.xml.model.LightSource

copyLinkedAnnotationList() - Method in class ome.xml.model.Objective

copyLinkedAnnotationList() - Method in class ome.xml.model.Plane

copyLinkedAnnotationList() - Method in class ome.xml.model.Plate

copyLinkedAnnotationList() - Method in class ome.xml.model.PlateAcquisition

copyLinkedAnnotationList() - Method in class ome.xml.model.Project

copyLinkedAnnotationList() - Method in class ome.xml.model.Reagent

copyLinkedAnnotationList() - Method in class ome.xml.model.ROI

copyLinkedAnnotationList() - Method in class ome.xml.model.Screen

copyLinkedAnnotationList() - Method in class ome.xml.model.Shape

copyLinkedAnnotationList() - Method in class ome.xml.model.Well

copyLinkedChannelList() - Method in class ome.xml.model.Annotation

copyLinkedChannelList() - Method in class ome.xml.model.FilterSet

copyLinkedDatasetList() - Method in class ome.xml.model.Annotation

copyLinkedDatasetList() - Method in class ome.xml.model.Experimenter

copyLinkedDatasetList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedDatasetList() - Method in class ome.xml.model.Image

copyLinkedDatasetList() - Method in class ome.xml.model.Project

copyLinkedDetectorList() - Method in class ome.xml.model.Annotation

copyLinkedDichroicList() - Method in class ome.xml.model.Annotation

copyLinkedEmissionFilterList() - Method in class ome.xml.model.FilterSet

copyLinkedEmissionFilterList() - Method in class ome.xml.model.LightPath

copyLinkedExcitationFilterList() - Method in class ome.xml.model.FilterSet

copyLinkedExcitationFilterList() - Method in class ome.xml.model.LightPath

copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Annotation

copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Experimenter

copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Leader

copyLinkedExperimenterList() - Method in class ome.xml.model.Annotation

copyLinkedExperimenterList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedExperimentList() - Method in class ome.xml.model.Experimenter

copyLinkedFilterList() - Method in class ome.xml.model.Annotation

copyLinkedFilterSetEmissionFilterList() - Method in class ome.xml.model.Filter

copyLinkedFilterSetExcitationFilterList() - Method in class ome.xml.model.Filter

copyLinkedFilterSetList() - Method in class ome.xml.model.Dichroic

copyLinkedImageList() - Method in class ome.xml.model.Annotation

copyLinkedImageList() - Method in class ome.xml.model.Dataset

copyLinkedImageList() - Method in class ome.xml.model.Experiment

copyLinkedImageList() - Method in class ome.xml.model.Experimenter

copyLinkedImageList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedImageList() - Method in class ome.xml.model.Instrument

copyLinkedImageList() - Method in class ome.xml.model.MicrobeamManipulation

copyLinkedImageList() - Method in class ome.xml.model.ROI

copyLinkedInstrumentList() - Method in class ome.xml.model.Annotation

copyLinkedLaserList() - Method in class ome.xml.model.Pump

copyLinkedLeaderList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedLightPathEmissionFilterList() - Method in class ome.xml.model.Filter

copyLinkedLightPathExcitationFilterList() - Method in class ome.xml.model.Filter

copyLinkedLightPathList() - Method in class ome.xml.model.Annotation

copyLinkedLightPathList() - Method in class ome.xml.model.Dichroic

copyLinkedLightSourceList() - Method in class ome.xml.model.Annotation

copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Experimenter

copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Image

copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.ROI

copyLinkedObjectiveList() - Method in class ome.xml.model.Annotation

copyLinkedPlaneList() - Method in class ome.xml.model.Annotation

copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.Annotation

copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.WellSample

copyLinkedPlateList() - Method in class ome.xml.model.Annotation

copyLinkedPlateList() - Method in class ome.xml.model.Screen

copyLinkedProjectList() - Method in class ome.xml.model.Annotation

copyLinkedProjectList() - Method in class ome.xml.model.Dataset

copyLinkedProjectList() - Method in class ome.xml.model.Experimenter

copyLinkedProjectList() - Method in class ome.xml.model.ExperimenterGroup

copyLinkedReagentList() - Method in class ome.xml.model.Annotation

copyLinkedROIList() - Method in class ome.xml.model.Annotation

copyLinkedROIList() - Method in class ome.xml.model.Image

copyLinkedROIList() - Method in class ome.xml.model.MicrobeamManipulation

copyLinkedScreenList() - Method in class ome.xml.model.Annotation

copyLinkedScreenList() - Method in class ome.xml.model.Plate

copyLinkedShapeList() - Method in class ome.xml.model.Annotation

copyLinkedWellList() - Method in class ome.xml.model.Annotation

copyLinkedWellList() - Method in class ome.xml.model.Reagent

copyLinkedWellSampleList() - Method in class ome.xml.model.Image

copyLinkedWellSampleList() - Method in class ome.xml.model.PlateAcquisition

copyListAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyLongAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyMapAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyMicrobeamManipulationList() - Method in class ome.xml.model.Experiment

copyNodeRecursively(Entry, DirectoryEntry) - Method in class loci.poi.POIDocument

Copies an Entry into a target POIFS directory, recursively

copyNodes(POIFSFileSystem, POIFSFileSystem, List) - Method in class loci.poi.POIDocument

Copies nodes from one POIFS to the other minus the excepts

copyObjectiveList() - Method in class ome.xml.model.Instrument

copyPixels(int, int, int, int, int, int, byte[], byte[], boolean) - Method in class loci.formats.in.NativeND2Reader

copyPlaneList() - Method in class ome.xml.model.Pixels

copyPlateAcquisitionList() - Method in class ome.xml.model.Plate

copyPlateList() - Method in class ome.xml.model.OME

copyProjectList() - Method in class ome.xml.model.OME

copyReagentList() - Method in class ome.xml.model.Screen

copyright - Static variable in class jj2000.j2k.JJ2KInfo

The copyright message string.

COPYRIGHT - Static variable in class loci.formats.tiff.IFD

copyROIList() - Method in class ome.xml.model.OME

copyScaled(BufferedImage, BufferedImage, Object) - Static method in class loci.formats.gui.AWTImageTools

Copies the source image into the target, applying scaling.

copyScreenList() - Method in class ome.xml.model.OME

copyShapeList() - Method in class ome.xml.model.Union

copyTagAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyTermAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyTiffDataList() - Method in class ome.xml.model.Pixels

copyTimestampAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

copyValues(File, byte[]) - Method in class ome.specification.XMLWriter

Copies the array to the file.

copyWellList() - Method in class ome.xml.model.Plate

copyWellSampleList() - Method in class ome.xml.model.Well

copyXMLAnnotationList() - Method in class ome.xml.model.StructuredAnnotations

core - Variable in class loci.formats.DimensionSwapper

Core metadata associated with this dimension swapper.

core - Variable in class loci.formats.FileStitcher

Core metadata.

core - Variable in class loci.formats.FormatReader

Core metadata values.

core - Variable in class loci.formats.in.LeicaHandler

core - Variable in class loci.formats.in.ND2Handler

core - Variable in class loci.formats.in.VolocityReader.Stack

coreIndex - Variable in class loci.formats.FileStitcher

The number of the current series.

coreIndex - Variable in class loci.formats.FormatReader

The number of the current series.

coreIndexToSeries(int) - Method in class loci.formats.FileStitcher

coreIndexToSeries(int) - Method in class loci.formats.FormatReader

coreIndexToSeries(int) - Method in interface loci.formats.IFormatReader

Returns the series corresponding to the specified core index.

coreIndexToSeries(int) - Method in class loci.formats.ImageReader

coreIndexToSeries(int) - Method in class loci.formats.in.FilePatternReader

coreIndexToSeries(int) - Method in class loci.formats.ReaderWrapper

CoreMetadata - Class in loci.formats

Encompasses core metadata values.

CoreMetadata() - Constructor for class loci.formats.CoreMetadata

CoreMetadata(IFormatReader, int) - Constructor for class loci.formats.CoreMetadata

CoreMetadata(CoreMetadata) - Constructor for class loci.formats.CoreMetadata

correctForUnits(Double, String) - Method in class loci.formats.in.GatanReader

correction - Variable in class loci.formats.in.ND2Handler

correction - Variable in class loci.formats.in.NikonTiffReader

correction - Variable in class loci.formats.in.ZeissLSMReader.Recording

CORRECTION - Static variable in class ome.specification.XMLMockObjects

The default objective's correction.

Correction - Enum in ome.xml.model.enums

Correction(String) - Constructor for enum ome.xml.model.enums.Correction

correction - Variable in class ome.xml.model.Objective

correctionCollar - Variable in class loci.formats.in.ZeissCZIReader

correctionCollar - Variable in class ome.xml.model.ObjectiveSettings

CorrectionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Correction.

CorrectionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CorrectionEnumHandler

corrections - Variable in class loci.formats.in.LIFReader

CorruptedCodestreamException - Exception in jj2000.j2k.codestream

Thsi exception is thrown whenever an illegal value is read from a bit stream.

CorruptedCodestreamException() - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException

Constructs a new CorruptedCodestreamException exception with no detail message.

CorruptedCodestreamException(String) - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException

Constructs a new CorruptedCodestreamException exception with the specified detail message.

cortime - Variable in class loci.formats.in.SDTInfo

Correlation time [ms].

count - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField

The number of data items present in the field.

count - Variable in class jj2000.j2k.entropy.decoder.ByteInputBuffer

The index one greater than the last valid character in the input stream buffer

count - Variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

The number of valid bytes in the buffer

count - Variable in class loci.formats.in.LeicaHandler

count() - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

count - Variable in class loci.formats.in.ZeissTIFFHandler.TagSet

COUNT - Static variable in class loci.poi.hssf.record.FnGroupCountRecord

suggested default (14 dec)

count - Variable in class loci.tests.testng.DotTestListener

Count - Class in mdbtools.dbengine.functions

Count() - Constructor for class mdbtools.dbengine.functions.Count

count - Variable in enum ome.jxr.ifd.IFDEntry

countBits(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

countBlocks() - Method in interface loci.poi.poifs.filesystem.BATManaged

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

countBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.property.PropertyTable

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Return the number of BigBlock's this instance uses

countBlocks() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Return the number of BigBlock's this instance uses

countedByteRead() - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns a byte read from the RandomAccessIO.

COUNTER_CLOCKWISE - Static variable in class loci.formats.in.FluoviewReader

countImages() - Method in class loci.formats.in.BaseZeissReader

countImages() - Method in class loci.formats.in.ZeissTIFFReader

countImages() - Method in class loci.formats.in.ZeissZVIReader

countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Total count of all children and their children's children.

countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShape

Count of all children and their childrens children.

countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Count of all children and their childrens children.

CountryRecord - Class in loci.poi.hssf.record

Title: Country Record (aka WIN.INI country)

CountryRecord() - Constructor for class loci.poi.hssf.record.CountryRecord

CountryRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CountryRecord

Constructs a CountryRecord and sets its fields appropriately

countStrings() - Method in class loci.poi.hssf.record.SSTRecord

CP_037 - Static variable in class loci.poi.hpsf.Constants

Codepage 037, a special case

CP_EUC_JP - Static variable in class loci.poi.hpsf.Constants

Codepage for EUC-JP

CP_EUC_KR - Static variable in class loci.poi.hpsf.Constants

Codepage for EUC-KR

CP_GB18030 - Static variable in class loci.poi.hpsf.Constants

Codepage for GB18030

CP_GB2312 - Static variable in class loci.poi.hpsf.Constants

Codepage for GB2312

CP_GBK - Static variable in class loci.poi.hpsf.Constants

Codepage for GBK, aka MS936

CP_ISO_2022_JP1 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-2022-JP

CP_ISO_2022_JP2 - Static variable in class loci.poi.hpsf.Constants

Another codepage for ISO-2022-JP

CP_ISO_2022_JP3 - Static variable in class loci.poi.hpsf.Constants

Yet another codepage for ISO-2022-JP

CP_ISO_2022_KR - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-2022-KR

CP_ISO_8859_1 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-1

CP_ISO_8859_2 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-2

CP_ISO_8859_3 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-3

CP_ISO_8859_4 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-4

CP_ISO_8859_5 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-5

CP_ISO_8859_6 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-6

CP_ISO_8859_7 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-7

CP_ISO_8859_8 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-8

CP_ISO_8859_9 - Static variable in class loci.poi.hpsf.Constants

Codepage for ISO-8859-9

CP_JOHAB - Static variable in class loci.poi.hpsf.Constants

Codepage for Johab

CP_KOI8_R - Static variable in class loci.poi.hpsf.Constants

Codepage for KOI8-R

CP_MAC_ARABIC - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Arabic (Java: MacArabic)

CP_MAC_CENTRAL_EUROPE - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Central Europe (Latin-2) (Java: MacCentralEurope)

CP_MAC_CHINESE_SIMPLE - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Chinese Simplified (Java: unknown - use EUC_CN, ISO2022_CN_GB, MS936 or cp935)

CP_MAC_CHINESE_TRADITIONAL - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Chinese Traditional (Java: unknown - use Big5, MS950, or cp937)

CP_MAC_CROATIAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Croatian (Java: MacCroatian)

CP_MAC_CYRILLIC - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Cyrillic (Java: MacCyrillic)

CP_MAC_GREEK - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Greek (Java: MacGreek)

CP_MAC_HEBREW - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Hebrew (Java: MacHebrew)

CP_MAC_ICELAND - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Iceland (Java: MacIceland)

CP_MAC_JAPAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Japan (Java: unknown - use SJIS, cp942 or cp943)

CP_MAC_KOREAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Korean (Java: unknown - use EUC_KR or cp949)

CP_MAC_ROMAN - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Roman (Java: MacRoman)

CP_MAC_ROMANIA - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Romanian (Java: MacRomania)

CP_MAC_THAI - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Thai (Java: MacThai)

CP_MAC_TURKISH - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Turkish (Java: MacTurkish)

CP_MAC_UKRAINE - Static variable in class loci.poi.hpsf.Constants

Codepage for Macintosh Ukrainian (Java: MacUkraine)

CP_MS949 - Static variable in class loci.poi.hpsf.Constants

Codepage for MS949

CP_SJIS - Static variable in class loci.poi.hpsf.Constants

Codepage for SJIS

CP_UNICODE - Static variable in class loci.poi.hpsf.Constants

Codepage for Unicode

CP_US_ACSII - Static variable in class loci.poi.hpsf.Constants

Codepage for US-ASCII

CP_US_ASCII2 - Static variable in class loci.poi.hpsf.Constants

Another codepage for US-ASCII

CP_UTF16 - Static variable in class loci.poi.hpsf.Constants

Codepage for UTF-16

CP_UTF16_BE - Static variable in class loci.poi.hpsf.Constants

Codepage for UTF-16 big-endian

CP_UTF8 - Static variable in class loci.poi.hpsf.Constants

Codepage for UTF-8

CP_WINDOWS_1250 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1250

CP_WINDOWS_1251 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1251

CP_WINDOWS_1252 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1252

CP_WINDOWS_1253 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1253

CP_WINDOWS_1254 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1254

CP_WINDOWS_1255 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1255

CP_WINDOWS_1256 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1256

CP_WINDOWS_1257 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1257

CP_WINDOWS_1258 - Static variable in class loci.poi.hpsf.Constants

Codepage for Windows 1258

CPA - Static variable in class ome.units.UNITS

cqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

cQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder

The component in which the ncb quit condition was reached

CR - Static variable in class loci.poi.hssf.model.FormulaParser

crc - Variable in class loci.common.CBZip2InputStream

CRC - Class in loci.common

A simple class to hold and calculate the CRC for sanity checking the data.

CRC() - Constructor for class loci.common.CRC

crc(byte[]) - Method in class loci.formats.out.APNGWriter

crc(byte[], int, int) - Method in class loci.formats.out.APNGWriter

CRC_32_TABLE - Static variable in class loci.common.CRC

create(InputStream) - Static method in class loci.poi.hpsf.PropertySetFactory

Creates the most specific PropertySet from an InputStream.

create() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

create(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

create() - Method in class loci.poi.hssf.usermodel.EscherGraphics

create() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

create(String, Properties) - Static method in class loci.poi.hssf.usermodel.FontDetails

Create an instance of FontDetails by loading them from the provided property object.

create(T, UnitsElectricPotential) - Static method in enum ome.xml.model.enums.UnitsElectricPotential

create(T, UnitsElectricPotential) - Static method in enum ome.xml.model.enums.UnitsElectricPotential

create(T, UnitsFrequency) - Static method in enum ome.xml.model.enums.UnitsFrequency

create(T, UnitsFrequency) - Static method in enum ome.xml.model.enums.UnitsFrequency

create(T, UnitsLength) - Static method in enum ome.xml.model.enums.UnitsLength

create(T, UnitsLength) - Static method in enum ome.xml.model.enums.UnitsLength

create(T, UnitsPower) - Static method in enum ome.xml.model.enums.UnitsPower

create(T, UnitsPower) - Static method in enum ome.xml.model.enums.UnitsPower

create(T, UnitsPressure) - Static method in enum ome.xml.model.enums.UnitsPressure

create(T, UnitsPressure) - Static method in enum ome.xml.model.enums.UnitsPressure

create(T, UnitsTemperature) - Static method in enum ome.xml.model.enums.UnitsTemperature

create(T, UnitsTemperature) - Static method in enum ome.xml.model.enums.UnitsTemperature

create(T, UnitsTime) - Static method in enum ome.xml.model.enums.UnitsTime

create(T, UnitsTime) - Static method in enum ome.xml.model.enums.UnitsTime

createAggregate(List, int, DrawingManager2) - Static method in class loci.poi.hssf.record.EscherAggregate

Collapses the drawing records into an aggregate.

createAnchor(HSSFAnchor) - Method in class loci.poi.hssf.model.AbstractShape

Creates an escher anchor record from a HSSFAnchor.

createAnchor(HSSFAnchor) - Static method in class loci.poi.hssf.model.ConvertAnchor

createAngle(Double, Unit<Angle>) - Static method in class loci.formats.FormatTools

createAngle(Integer, Unit<Angle>) - Static method in class loci.formats.FormatTools

createAngle(T, Unit<Angle>) - Static method in class loci.formats.FormatTools

createAnnotatedImage() - Method in class ome.specification.XMLMockObjects

Creates and annotates an image.

createAnnotation(String, OMEModelObject, int) - Method in class ome.specification.XMLMockObjects

Create a comment annotation for the specified object.

createArrayForType(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Creates an array appropriate for the indicated data type.

createBackup() - Method in class loci.poi.hssf.model.Workbook

creates the Backup record with backup set to 0.

createBaseReader() - Method in class loci.plugins.in.ImportProcess

Initializes an IFormatReader according to the current configuration.

CreateBaseUnit(String, String) - Static method in class ome.units.unit.Unit

createBasicPlate(int) - Method in class ome.specification.XMLMockObjects

Creates a basic plate.

createBasicPlateWithReagent() - Method in class ome.specification.XMLMockObjects

Creates a plate with 1 row, 1 column and 1 field.

createBATBlocks(int[], int) - Static method in class loci.poi.poifs.storage.BATBlock

Create an array of BATBlocks from an array of int block allocation table entries

createBinaryFile() - Method in class ome.specification.XMLMockObjects

Creates a binary file.

createBinData(int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a new object.

createBitsPerComponentBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createBlank(int, short) - Method in class loci.poi.hssf.model.Sheet

create a BLANK record (does not add it to the records contained in this sheet)

createBlocks(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

Create the BATBlocks we need

createBOF() - Method in class loci.poi.hssf.model.Sheet

creates the BOF record

createBOF() - Method in class loci.poi.hssf.model.Workbook

creates the BOF record

createBookBool() - Method in class loci.poi.hssf.model.Workbook

creates the BookBool record with saveLinkValues set to 0.

createBoundSheet(int) - Method in class loci.poi.hssf.model.Workbook

create a "bound sheet" or "bundlesheet" (depending who you ask) record Always sets the sheet's bof to 0.

createBox(int, Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates a Box object with the provided type based on the provided Node object based on reflection.

createBuilder() - Static method in class loci.common.xml.XMLTools

Creates a new DocumentBuilder via DocumentBuilderFactory or logs and throws a RuntimeException.

createBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

createBuiltInName(byte, int) - Method in class loci.poi.hssf.model.Workbook

Generates a NameRecord to represent a built-in region

createCalcCount() - Method in class loci.poi.hssf.model.Sheet

creates the CalcCount record and sets it to 0x64 (default number of iterations)

createCalcMode() - Method in class loci.poi.hssf.model.Sheet

creates the CalcMode record and sets it to 1 (automatic formula caculation)

createCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

Use this to create new cells within the row and return it.

createCell(short, int) - Method in class loci.poi.hssf.usermodel.HSSFRow

Use this to create new cells within the row and return it.

createCellFromRecord(CellValueRecordInterface) - Method in class loci.poi.hssf.usermodel.HSSFRow

create a high level HSSFCell object from an existing low level record.

createCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create a new Cell style and add it to the workbook's style table

createCellXF() - Method in class loci.poi.hssf.model.Workbook

creates a new Cell-type Extneded Format Record and adds it to the end of ExtendedFormatRecords collection

createChannel(int) - Method in class ome.specification.XMLMockObjects

Creates a channel.

createChannelDefinitionFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createChannelPriorities() - Static method in class loci.formats.in.LIFReader

createCodec(boolean) - Method in class loci.formats.in.NativeND2Reader

createCodepage() - Method in class loci.poi.hssf.model.Workbook

creates the Codepage record containing the constant stored in CODEPAGE

createColInfo() - Method in class loci.poi.hssf.model.Sheet

creates the ColumnInfo Record and sets it to a default column/width

createColInfo() - Static method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

creates the ColumnInfo Record and sets it to a default column/width

createColorModel(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Creates a ColorModel that may be used with the specified SampleModel.

createColorModel(ColorSpace, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

createColorModel() - Method in class loci.plugins.util.ImageProcessorReader

createColorSpecificationBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createColorTable(ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

Create a color table from the image ColorModel and SampleModel.

createComment(HSSFAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Constructs a cell comment.

createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.Index16ColorModel

createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.SignedColorModel

createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel

createComponentCM(ColorSpace, int, int, boolean, boolean) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Create a ComponentColorModel for use in creating an ImageTypeSpecifier.

createContinue2() - Method in class loci.poi.hssf.record.TextObjectRecord

createCountry() - Method in class loci.poi.hssf.model.Workbook

Creates the Country record with the default country set to 1 and current country set to 7 in case of russian locale ("ru_RU") and 1 otherwise

created - Variable in class loci.formats.out.QTWriter

Time the file was created.

createData() - Method in class loci.tests.IOTester

createDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the instance of HSSFDataFormat for this workbook.

createDataset(int) - Method in class ome.specification.XMLMockObjects

Creates a dataset.

createDateWindow1904() - Method in class loci.poi.hssf.model.Workbook

creates the DateWindow1904 record with windowing set to 0.

createDecoder(short[], int, int) - Method in class loci.formats.codec.HuffmanCodec.Decoder

createDecoder(HuffmanCodec.Decoder, short[], int, int) - Method in class loci.formats.codec.HuffmanCodec.Decoder

createDefaultColWidth() - Method in class loci.poi.hssf.model.Sheet

creates the DefaultColWidth Record and sets it to 8

createDefaultPalette() - Method in class loci.poi.hssf.record.PaletteRecord

Creates the default palette as PaletteRecord binary data

createDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet

creates the DefaultRowHeight Record and sets its options to 0 and rowheight to 0xff

createDelta() - Method in class loci.poi.hssf.model.Sheet

creates the Delta record and sets it to 0.0010 (default accuracy)

createDequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the dequantizer parameters.

createDetector(int) - Method in class ome.specification.XMLMockObjects

Creates a detector.

createDetectorSettings(int) - Method in class ome.specification.XMLMockObjects

Creates a detector settings.

createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager

createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager2

createDichroic(int) - Method in class ome.specification.XMLMockObjects

Creates a dichroic.

createDimensions() - Method in class loci.poi.hssf.model.Sheet

creates the Dimensions Record and sets it to bogus values (you should set this yourself or let the high level API do it for you)

createDirectory(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

create a new DirectoryEntry

createDirectory(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DirectoryEntry

createDirectory(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

create a new DirectoryEntry in the root directory

createDocument() - Static method in class loci.common.xml.XMLTools

Calls DocumentBuilder.newDocument() on a new builder.

createDocument(String, RandomAccessInputStream) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

create a new DocumentEntry

createDocument(String, int, POIFSWriterListener) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

create a new DocumentEntry; the data will be provided later

createDocument(POIFSDocument) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DocumentEntry

createDocument(String, RandomAccessInputStream) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DocumentEntry

createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.DirectoryNode

create a new DocumentEntry; the data will be provided later

createDocument(RandomAccessInputStream, String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Create a new document to be added to the root directory

createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

create a new DocumentEntry in the root entry; the data will be provided later

createDocumentInputStream(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

open a document in the root entry's list of entries

createDrawingGroup() - Method in class loci.poi.hssf.model.Workbook

Creates a drawing group record.

createDrawingPatriarch() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates the toplevel drawing patriarch.

createDSF() - Method in class loci.poi.hssf.model.Workbook

creates the DSF record containing a 0 since HSSF can't even create Dual Stream Files

createElectricPotential(Double, Unit<ElectricPotential>) - Static method in class loci.formats.FormatTools

createElectricPotential(Integer, Unit<ElectricPotential>) - Static method in class loci.formats.FormatTools

createElectricPotential(T, Unit<ElectricPotential>) - Static method in class loci.formats.FormatTools

createEntropyDecoder(CodedCBlkDataSrcDec, J2KImageReadParamJava) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Creates and returns the entropy decoder corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.

createEOF() - Method in class loci.poi.hssf.model.Sheet

creates the EOF record

createEOF() - Method in class loci.poi.hssf.model.Workbook

creates the EOF record

createExperiment(int) - Method in class ome.specification.XMLMockObjects

Creates an experiment.

createExperimenter(int) - Method in class ome.specification.XMLMockObjects

Creates an experimenter.

createExperimentWithMicrobeam(int) - Method in class ome.specification.XMLMockObjects

Creates an experiment with a microbeam.

createExtendedFormat(int) - Method in class loci.poi.hssf.model.Workbook

Creates an ExtendedFormatRecord object

createExtendedFormat() - Method in class loci.poi.hssf.model.Workbook

creates an default cell type ExtendedFormatRecord object.

createExtendedSST() - Method in class loci.poi.hssf.model.Workbook

Creates the ExtendedSST record with numstrings per bucket set to 0x8.

createExternSheet() - Method in class loci.poi.hssf.model.Workbook

creates a new extern sheet record

createExtSSTRecord(int) - Method in class loci.poi.hssf.record.SSTRecord

Creates an extended string record based on the current contents of the current SST record.

createFileInfo() - Method in class loci.plugins.in.ImagePlusReader

createFilter(int, double, double) - Method in class ome.specification.XMLMockObjects

Creates a filter.

createFilterSet(int) - Method in class ome.specification.XMLMockObjects

Creates a filter set.

createFnGroupCount() - Method in class loci.poi.hssf.model.Workbook

creates the FnGroupCount record containing the Magic number constant of 14.

createFont() - Method in class loci.poi.hssf.model.Workbook

creates a Font record with the following magic values:

createFont() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create a new Font and add it to the workbook's font table

createFooter() - Method in class loci.poi.hssf.model.Sheet

creates the Footer Record and sets it to nothing/0 length

createFooterString() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Creates the complete footer string based on the left, center, and middle strings.

createFormat(int) - Method in class loci.poi.hssf.model.Workbook

Creates a FormatRecord object

createFormat(String) - Method in class loci.poi.hssf.model.Workbook

Creates a FormatRecord, inserts it, and returns the index code.

createFormula(int, short, String) - Method in class loci.poi.hssf.model.Sheet

Attempts to parse the formula into PTGs and create a formula record DOES NOT WORK YET

createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.model.Sheet

Creates a split (freezepane).

createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates a split (freezepane).

createFreezePane(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates a split (freezepane).

createFrequency(Double, Unit<Frequency>) - Static method in class loci.formats.FormatTools

createFrequency(Integer, Unit<Frequency>) - Static method in class loci.formats.FormatTools

createFrequency(T, Unit<Frequency>) - Static method in class loci.formats.FormatTools

createFromMetadata(IIOMetadata) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Creates a TIFFDirectory instance from the contents of an image metadata object.

createFromMetadataNode(TIFFTagSet, Node) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Creates a TIFFField from a TIFF native image metadata node.

createFullPopulatedPlate(int) - Method in class ome.specification.XMLMockObjects

Creates a plate with XMLMockObjects.ROWS rows, XMLMockObjects.COLUMNS columns and XMLMockObjects.FIELDS field.

createGridset() - Method in class loci.poi.hssf.model.Sheet

creates the Gridset record and sets it to true (user has mucked with the gridlines)

createGroup(String) - Method in interface loci.formats.services.JHDFService

Writes an array as sub-slice into an existing HDF5 dataset

createGroup(String) - Method in class loci.formats.services.JHDFServiceImpl

createGroup(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a new group record stored under this patriarch.

createGroup(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Create another group under this group.

createGuts() - Method in class loci.poi.hssf.model.Sheet

creates the Guts record and sets leftrow/topcol guttter and rowlevelmax/collevelmax to 0

createHCenter() - Method in class loci.poi.hssf.model.Sheet

creates the HCenter Record and sets it to false (don't horizontally center)

createHeader() - Method in class loci.poi.hssf.model.Sheet

creates the Header Record and sets it to nothing/0 length

createHeaderBoxFromStandardNode(Node, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createHeaderString() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Creates the complete header string based on the left, center, and middle strings.

createHideObj() - Method in class loci.poi.hssf.model.Workbook

creates the HideObj record with hide object set to 0.

createHuffmanDecodingTables(int, int) - Method in class loci.common.CBZip2InputStream

Called by recvDecodingTables() exclusively.

createImage(String, List<ImageProcessor>) - Static method in class loci.plugins.in.ImagePlusReader

Creates an ImagePlus from the given image processors.

createImage(String, ImageStack, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader

Creates an ImagePlus from the given image stack.

createImage() - Method in class loci.plugins.util.RecordedImageProcessor

createImage(int, boolean) - Method in class ome.specification.XMLMockObjects

Creates a new image.

createImage(int) - Method in class ome.specification.XMLMockObjects

Creates a new image.

createImage() - Method in class ome.specification.XMLMockObjects

Creates and returns the root element.

createImage(boolean) - Method in class ome.specification.XMLMockObjects

Creates and returns the root element.

createImageEnvironment() - Method in class ome.specification.XMLMockObjects

Creates a imaging environment.

createImageWithAcquisitionData() - Method in class ome.specification.XMLMockObjects

Creates an image with acquisition data.

createImageWithAnnotatedAcquisitionData() - Method in class ome.specification.XMLMockObjects

Creates an image with acquisition data.

createImageWithExperiment(int, boolean, Experiment) - Method in class ome.specification.XMLMockObjects

Creates an image with a given experiment.

createImageWithROI() - Method in class ome.specification.XMLMockObjects

Creates an image with ROI.

createIndex() - Method in class loci.poi.hssf.model.Sheet

creates the Index record - not currently used

createIndexColorModel(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Creates an palette representing colors from given image img.

createIndexedImage(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder

Creates an image representing given image src using IndexColorModel.

createIndexMap(int) - Method in class loci.formats.in.FakeReader

Creates a mapping between indices and color values.

createInputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi

createInstance(RandomAccessIO, HeaderDecoder, J2KImageReadParamJava, DecoderSpecs, boolean, HeaderInfo) - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Creates a bit stream reader of the correct type that works on the provided RandomAccessIO, with the special parameters from the parameter list.

createInstance(CBlkQuantDataSrcEnc, J2KImageWriteParamJava, CBlkSizeSpec, PrecinctSizeSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec) - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder

Creates a EntropyCoder object for the appropriate entropy coding parameters in the parameter list 'pl', and having 'src' as the source of quantized data.

createInstance(CodedCBlkDataSrcEnc, float, CodestreamWriter, J2KImageWriteParamJava) - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Creates a PostCompRateAllocator object for the appropriate rate allocation parameters in the parameter list 'pl', having 'src' as the source of entropy coded data, 'rate' as the target bitrate and 'bw' as the bit stream writer object.

createInstance(CBlkWTDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.quantization.quantizer.Quantizer

Creates a Quantizer object for the appropriate type of quantization specified in the options in the parameter list 'pl', and having 'src' as the source of data to be quantized.

createInstance(Quantizer, J2KImageWriteParamJava) - Static method in class jj2000.j2k.roi.encoder.ROIScaler

Creates a ROIScaler object.

createInstance(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Static method in class jj2000.j2k.roi.ROIDeScaler

Creates a ROIDeScaler object.

createInstance(BlkImgDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT

Creates a ForwardWT object with the specified filters, and with other options specified in the parameter list 'pl'.

createInstance(CBlkWTDataSrcDec, DecoderSpecs) - Static method in class jj2000.j2k.wavelet.synthesis.InverseWT

Creates an InverseWT object that works on the data type of the source, with the special additional parameters from the parameter list.

createInstances() - Method in class loci.tests.testng.FormatReaderTestFactory

createInstances() - Method in class loci.tests.testng.FormatWriterTestFactory

createInstrument(boolean) - Method in class ome.specification.XMLMockObjects

Creates an instrument with filters, light sources etc.

createInterfaceEnd() - Method in class loci.poi.hssf.model.Workbook

creates the InterfaceEnd record

createInterfaceHdr() - Method in class loci.poi.hssf.model.Workbook

creates the InterfaceHdr record

createInterleavedSM(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Create a PixelInterleavedSampleModel for use in creating an ImageTypeSpecifier.

createIteration() - Method in class loci.poi.hssf.model.Sheet

creates the Iteration record and sets it to false (don't iteratively calculate formulas)

createKeys() - Static method in class loci.formats.in.ZeissLSMReader

createLabelSST(int, short, int) - Method in class loci.poi.hssf.model.Sheet

Create a LABELSST Record (does not add it to the records contained in this sheet)

createLargePalette(ColorModel) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

createLength(Double, Unit<Length>) - Static method in class loci.formats.FormatTools

createLength(Integer, Unit<Length>) - Static method in class loci.formats.FormatTools

createLength(T, Unit<Length>) - Static method in class loci.formats.FormatTools

createLightPath() - Method in class ome.specification.XMLMockObjects

Creates a light path.

createLightSource(String, int) - Method in class ome.specification.XMLMockObjects

Creates a light source of the specified type.

createLightSourceSettings(int) - Method in class ome.specification.XMLMockObjects

Creates a light source settings.

createLSID(String, int...) - Static method in class loci.formats.MetadataTools

Constructs an LSID, given the object type and indices.

createMask(int[], int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

createMergedCells() - Method in class loci.poi.hssf.model.Sheet

createMetadata(String, CoreMetadata) - Method in class loci.formats.tools.MakeTestOmeTiff

createMetadata(String, int, int, boolean) - Method in class loci.tests.testng.ConversionTest

createMicrobeamManipulation(int) - Method in class ome.specification.XMLMockObjects

Creates a microbeam manipulation.

createMicroscope() - Method in class ome.specification.XMLMockObjects

Creates a microscope.

createMMS() - Method in class loci.poi.hssf.model.Workbook

creates an MMS record

createModulo(OMEXMLMetadata, Modulo, StructuredAnnotations, Image, int, int, int) - Method in class loci.formats.services.OMEXMLServiceImpl

Create a ModuloAlong* annotation corresponding to the given Modulo.

createName() - Method in class loci.poi.hssf.model.Workbook

creates new name

createName() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

creates a new named range and add it to the model

createNewDocument() - Method in class ome.xml.meta.AbstractOMEXMLMetadata

createNewFile() - Method in class loci.common.Location

Creates a new empty file named by this Location's path name iff a file with this name does not already exist.

createNewFont() - Method in class loci.poi.hssf.model.Workbook

creates a new font record and adds it to the "font table".

createNewPtg() - Method in class loci.poi.hssf.record.NameRecord

createNodeIntoTree(IIOMetadataNode, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createNoteRecord(HSSFComment, int) - Method in class loci.poi.hssf.model.CommentShape

Creates the low level NoteRecord which holds the comment attributes.

createNumber(int, short, double) - Method in class loci.poi.hssf.model.Sheet

Create a NUMBER Record (does not add it to the records contained in this sheet)

createObjective(int) - Method in class ome.specification.XMLMockObjects

Creates an objective.

createObjectiveSettings(int) - Method in class ome.specification.XMLMockObjects

Creates an objective settings.

createObjectProtect() - Method in class loci.poi.hssf.model.Sheet

creates an ObjectProtect record with protect set to false.

createObjRecord(HSSFShape, int) - Method in class loci.poi.hssf.model.LineShape

Creates the low level OBJ record for this shape.

createObjRecord(HSSFShape, int) - Method in class loci.poi.hssf.model.PictureShape

Creates the low level OBJ record for this shape.

createObjRecord(HSSFShape, int) - Method in class loci.poi.hssf.model.PolygonShape

Creates the low level OBJ record for this shape.

createObjRecord(HSSFShape, int) - Method in class loci.poi.hssf.model.SimpleFilledShape

Creates the low level OBJ record for this shape.

createObjRecord(HSSFTextbox, int) - Method in class loci.poi.hssf.model.TextboxShape

Creates the low level OBJ record for this shape.

createOMEXMLMetadata() - Static method in class loci.formats.MetadataTools

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.

createOMEXMLMetadata() - Method in interface loci.formats.services.OMEXMLService

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.

createOMEXMLMetadata(String) - Method in interface loci.formats.services.OMEXMLService

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.

createOMEXMLMetadata(String, String) - Method in interface loci.formats.services.OMEXMLService

Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.

createOMEXMLMetadata() - Method in class loci.formats.services.OMEXMLServiceImpl

createOMEXMLMetadata(String) - Method in class loci.formats.services.OMEXMLServiceImpl

createOMEXMLMetadata(String, String) - Method in class loci.formats.services.OMEXMLServiceImpl

createOMEXMLRoot(String) - Method in interface loci.formats.services.OMEXMLService

Constructs an OME root node.

createOMEXMLRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl

createOutputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi

createPalette() - Method in class loci.poi.hssf.model.Workbook

Creates a palette record initialized to the default palette

createPaletteBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createParsedExpressionTokens(short, RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg

createPassword() - Method in class loci.poi.hssf.model.Sheet

creates a Password record with password set to 00.

createPassword() - Method in class loci.poi.hssf.model.Workbook

creates the Password record with password set to 0.

createPasswordRev4() - Method in class loci.poi.hssf.model.Workbook

creates the PasswordRev4 record with password set to 0.

createPicture(HSSFClientAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a picture.

createPicture(HSSFChildAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Creates a picture.

createPlane(String, CoreMetadata, int) - Method in class loci.formats.tools.MakeTestOmeTiff

createPlane(int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a plane information object.

createPlate(int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a default plate

createPlate(int, int, int, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a populated plate with images.

createPolygon(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a polygon

createPolygon(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Creates a polygon

createPopulatedPlate(int) - Method in class ome.specification.XMLMockObjects

Creates a plate with 1 row, 1 column and 1field.

createPopulatedPlate(int, int) - Method in class ome.specification.XMLMockObjects

Creates a plate with 1 row, 1 column and fieldsfield.

createPopulatedScreen(int, int, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates a screen with several plates.

createPopulatedScreen() - Method in class ome.specification.XMLMockObjects

Creates one 2x2 plate of with a single well sample per well and one plate acquisition.

createPower(Double, Unit<Power>) - Static method in class loci.formats.FormatTools

createPower(Integer, Unit<Power>) - Static method in class loci.formats.FormatTools

createPower(T, Unit<Power>) - Static method in class loci.formats.FormatTools

createPrecision() - Method in class loci.poi.hssf.model.Workbook

creates the Precision record with precision set to true.

createPressure(Double, Unit<Pressure>) - Static method in class loci.formats.FormatTools

createPressure(Integer, Unit<Pressure>) - Static method in class loci.formats.FormatTools

createPressure(T, Unit<Pressure>) - Static method in class loci.formats.FormatTools

createPrintGridlines() - Method in class loci.poi.hssf.model.Sheet

creates the PrintGridlines record and sets it to false (that makes for ugly sheets).

createPrintHeaders() - Method in class loci.poi.hssf.model.Sheet

creates the PrintHeaders record and sets it to false (we don't create headers yet so why print them)

createPrintSetup() - Method in class loci.poi.hssf.model.Sheet

creates the PrintSetup Record and sets it to defaults and marks it invalid

createProcessor(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

createProject(int) - Method in class ome.specification.XMLMockObjects

Creates a project.

createProperties(byte[], int, short) - Method in class loci.poi.ddf.EscherPropertyFactory

Create new properties from a byte array.

createPropertyBlockArray(List, int) - Static method in class loci.poi.poifs.storage.PropertyBlock

Create an array of PropertyBlocks from an array of Property instances, creating empty Property instances to make up any shortfall

createProtect() - Method in class loci.poi.hssf.model.Sheet

creates a Protect record with protect set to false.

createProtect() - Method in class loci.poi.hssf.model.Workbook

creates the Protect record with protect set to false.

createProtectionRev4() - Method in class loci.poi.hssf.model.Workbook

creates the ProtectionRev4 record with protect set to false.

createPtg(RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg

createRawImage() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Creates a BufferedImage whose underlying data array will be suitable for holding the raw decoded output of the decodeRaw method.

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

createReagent(int) - Method in class ome.specification.XMLMockObjects

Creates a reagent.

createRecord(byte[], int) - Method in class loci.poi.ddf.DefaultEscherRecordFactory

Generates an escher record including the any children contained under that record.

createRecord(byte[], int) - Method in interface loci.poi.ddf.EscherRecordFactory

Create a new escher record from the data provided.

createRecord(RecordInputStream) - Static method in class loci.poi.hssf.dev.BiffViewer

Essentially a duplicate of RecordFactory.

createRecord(RecordInputStream) - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory

create a record, if there are MUL records than multiple records are returned digested into the non-mul form.

createRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

createRecords(InputStream, boolean) - Static method in class loci.poi.hssf.dev.BiffViewer

Create an array of records from an input stream

createRecords(InputStream) - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

Create an array of records from an input stream

createRefMode() - Method in class loci.poi.hssf.model.Sheet

creates the RefMode record and sets it to A1 Mode (default reference mode)

createRefreshAll() - Method in class loci.poi.hssf.model.Workbook

creates the RefreshAll record with refreshAll set to true.

createResolutionBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createROI(int, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates an ROI.

createROIDeScaler(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Creates and returns the ROIDeScaler corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.

createRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl

Constructs an OME root node.

createRoot() - Method in class ome.xml.meta.AggregateMetadata

createRoot() - Method in class ome.xml.meta.DummyMetadata

createRoot() - Method in class ome.xml.meta.FilterMetadata

createRoot() - Method in interface ome.xml.meta.MetadataStore

Create root node.

createRoot() - Method in class ome.xml.meta.OMEXMLMetadataImpl

createRow(int) - Method in class loci.poi.hssf.model.Sheet

Create a row record.

createRow(int) - Static method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Create a row record.

createRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Create a new row within the sheet and return the high level representation

createRowFromRecord(RowRecord) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Used internally to create a high level Row object from a low level row object.

createSaveRecalc() - Method in class loci.poi.hssf.model.Sheet

creates the SaveRecalc record and sets it to true (recalculate before saving)

createScenarioProtect() - Method in class loci.poi.hssf.model.Sheet

creates a ScenarioProtect record with protect set to false.

createScreen(int) - Method in class ome.specification.XMLMockObjects

Creates a screen.

createSelection() - Method in class loci.poi.hssf.model.Sheet

Creates the Selection record and sets it to nothing selected

createShape(HSSFShape, int) - Static method in class loci.poi.hssf.model.AbstractShape

Create a new shape object used to create the escher records.

createShape(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Create a new simple shape under this group.

createShape(int, String, int, int, int) - Method in class ome.specification.XMLMockObjects

Creates the specified type of shape.

createSheet(List, int, int) - Static method in class loci.poi.hssf.model.Sheet

read support (offset used as starting point for search) for low level API.

createSheet(List, int) - Static method in class loci.poi.hssf.model.Sheet

read support (offset = 0) Same as createSheet(Record[] recs, int, int) only the record offset is assumed to be 0.

createSheet() - Static method in class loci.poi.hssf.model.Sheet

Creates a sheet with all the usual records minus values and the "index" record (not required).

createSheet() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.

createSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.

createSimpleShape(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Creates a simple shape.

createSmallPalette(ColorModel) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

createSpContainer(HSSFSimpleShape, int) - Method in class loci.poi.hssf.model.LineShape

Creates the lowerlevel escher records for this shape.

createSpContainer(HSSFSimpleShape, int) - Method in class loci.poi.hssf.model.PictureShape

Creates the lowerlevel escher records for this shape.

createSpContainer(HSSFPolygon, int) - Method in class loci.poi.hssf.model.PolygonShape

Generates the shape records for this shape.

createSpContainer(HSSFSimpleShape, int) - Method in class loci.poi.hssf.model.SimpleFilledShape

Generates the shape records for this shape.

createSpContainer(HSSFTextbox, int) - Method in class loci.poi.hssf.model.TextboxShape

Generates the escher shape records for this shape.

createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.model.Sheet

Creates a split pane.

createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Creates a split pane.

createSST() - Method in class loci.poi.hssf.model.Workbook

Creates the SST record with no strings and the unique/num string set to 0

createStack(List<ImageProcessor>, List<String>, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader

Creates an image stack from the given image processors.

createStageLabel() - Method in class ome.specification.XMLMockObjects

Creates a imaging environment.

createStyle(int) - Method in class loci.poi.hssf.model.Workbook

Creates a StyleRecord object

createSubRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.SubRecord

createSwatch(Color) - Method in class loci.plugins.in.ColorDialog

createTabId() - Method in class loci.poi.hssf.model.Workbook

creates the TabId record containing an array of 0,1,2.

createTemperature(Double, Unit<Temperature>) - Static method in class loci.formats.FormatTools

createTemperature(Integer, Unit<Temperature>) - Static method in class loci.formats.FormatTools

createTemperature(T, Unit<Temperature>) - Static method in class loci.formats.FormatTools

createTempFile(String, String) - Static method in class loci.poi.util.TempFile

Creates a temporary file.

createTextbox(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Constructs a textbox under the patriarch.

createTextbox(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Create a new textbox under this group.

createTextObjectRecord(HSSFTextbox, int) - Method in class loci.poi.hssf.model.TextboxShape

Textboxes also have an extra TXO record associated with them that most other shapes dont have.

createTileParts() - Method in class jj2000.j2k.util.CodestreamManipulator

This method creates the tileparts from the buffered tile headers, packet headers and packet data

createTime(Double, Unit<Time>) - Static method in class loci.formats.FormatTools

createTime(Integer, Unit<Time>) - Static method in class loci.formats.FormatTools

createTime(T, Unit<Time>) - Static method in class loci.formats.FormatTools

createTransform() - Method in class ome.specification.XMLMockObjects

createTransformFactory() - Static method in class loci.common.xml.XMLTools

createTree() - Method in class loci.poi.hssf.model.FormulaParser

Create a tree representation of the RPN token array used to run the class(RVA) change algo

createUseSelFS() - Method in class loci.poi.hssf.model.Workbook

Creates the UseSelFS object with the use natural language flag set to 0 (false)

createVCenter() - Method in class loci.poi.hssf.model.Sheet

creates the VCenter Record and sets it to false (don't horizontally center)

createVirtualStack(ImportProcess, int, List<LUT>) - Method in class loci.plugins.in.ImagePlusReader

createWindowOne() - Method in class loci.poi.hssf.model.Workbook

creates the WindowOne record with the following magic values:

createWindowProtect() - Method in class loci.poi.hssf.model.Workbook

creates the WindowProtect record with protect set to false.

createWindowTwo() - Method in class loci.poi.hssf.model.Sheet

creates the WindowTwo Record and sets it to:

createWorkbook(List) - Static method in class loci.poi.hssf.model.Workbook

read support for low level API.

createWorkbook() - Static method in class loci.poi.hssf.model.Workbook

Creates an empty workbook object with three blank sheets and all the empty fields.

createWriteAccess() - Method in class loci.poi.hssf.model.Workbook

creates the WriteAccess record containing the logged in user's name

createWriter(String, CoreMetadata, String) - Method in class loci.formats.tools.MakeTestOmeTiff

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

createWSBool() - Method in class loci.poi.hssf.model.Sheet

creates the WSBoolRecord and sets its values to defaults

createXBATBlocks(int[], int, int) - Static method in class loci.poi.poifs.storage.BATBlock

Create an array of XBATBlocks from an array of int block allocation table entries

createXMLBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

createXMLDocument(OME, boolean) - Method in class ome.specification.XMLWriter

Creates the String version of the XML file creating using the specified root node.

CREATION_TIME - Static variable in class loci.formats.in.CellSensReader

creationDate - Variable in class loci.formats.in.FV1000Reader

creationDate - Variable in class loci.formats.in.ImaconReader

creationDate - Variable in class loci.formats.in.InCellReader

creationDate - Variable in class loci.formats.in.IvisionReader

creationDate - Variable in class loci.formats.in.LeicaSCNReader.Image

creationDate - Variable in class loci.formats.in.PCIReader

creator - Variable in class ome.xml.model.OME

CREATOR_TAG - Static variable in class loci.formats.in.ImaconReader

crg - Variable in class jj2000.j2k.codestream.HeaderInfo

Reference to the CRG marker segment found in main header

CRG - Static variable in interface jj2000.j2k.codestream.Markers

Component registration (CRG): 0xFF63

CRG_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder

Flag bit for CRG marker segment found

crgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN

crop() - Method in class loci.plugins.util.RecordedImageProcessor

cropBox - Variable in class loci.plugins.in.MainDialog

CropDialog - Class in loci.plugins.in

Bio-Formats Importer crop options dialog box.

CropDialog(ImportProcess) - Constructor for class loci.plugins.in.CropDialog

Creates a crop options dialog for the Bio-Formats Importer.

cropRegion - Variable in class loci.plugins.in.ImporterOptions

crossCategoryAxisAtMaximum - Variable in class loci.poi.hssf.record.ValueRangeRecord

crossChan - Variable in class loci.formats.in.SDTInfo

Cross FCS routing channel number when chan = crossChan and mod == crossMod - Auto FCS otherwise - Cross FCS.

crossesFarRight - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

CrosshairStrategy - Class in loci.formats.cache

A crosshair strategy caches planes extending from the the current dimensional position along each individual axis, but not combinations of axes.

CrosshairStrategy(int[]) - Constructor for class loci.formats.cache.CrosshairStrategy

Constructs a crosshair strategy.

crossMod - Variable in class loci.formats.in.SDTInfo

Cross FCS module number.

crossMtResol - Variable in class loci.formats.in.SDTInfo

Macro time clock of cross FCS module in 0.1 ns units.

cs - Variable in class jj2000.j2k.entropy.Progression

Component index for the start of a progression

CS - Static variable in class loci.formats.in.DicomReader

CS - Static variable in class ome.units.UNITS

CS_2C - Static variable in class loci.formats.gui.TwoChannelColorSpace

CSB_APPROX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_ENUM_GREY - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_ENUM_SRGB - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_ENUM_YCC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

CSB_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Length of Colour Specification Box

CSB_METH - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

Colour Specification Box Fields

CSB_PREC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

cScroll - Variable in class loci.plugins.util.DataBrowser

csiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ

cSlider - Variable in class loci.formats.gui.ImageViewer

cSliders - Variable in class loci.plugins.util.DataBrowser

cspoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC

csRGB - Variable in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

csRGB - Variable in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

css - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Causal stripes specifications

cStep - Variable in class loci.plugins.in.ImporterOptions

CSV_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader

cT - Variable in class jj2000.j2k.entropy.decoder.MQDecoder

The bit code counter

cT - Variable in class jj2000.j2k.entropy.encoder.MQCoder

The bit code counter

ctp - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

The cumulative number of truncation points

cts - Variable in class jj2000.j2k.decoder.DecoderSpecs

The component transformation specifications

cts - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

The component transformations specifications

cts - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

The component transformations specifications

cts - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer

The inverse component transformation specifications

ctX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The current tile horizontal index

ctxtbufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Buffer for the contexts to use when sending buffered symbols to the MQ-coder, for each thread.

ctY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The current tile vertical index

cType - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader

culx - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The horizontal coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.

culy - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The vertical coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.

cur_pg - Variable in class mdbtools.libmdb.MdbHandle

cur_pg_num - Variable in class mdbtools.libmdb.MdbTableDef

cur_phys_pg - Variable in class mdbtools.libmdb.MdbTableDef

cur_pos - Variable in class mdbtools.libmdb.MdbHandle

cur_row - Variable in class mdbtools.libmdb.MdbTableDef

cur_value_len - Variable in class mdbtools.libmdb.MdbColumn

cur_value_start - Variable in class mdbtools.libmdb.MdbColumn

curbyte - Variable in class jj2000.j2k.codestream.writer.BitOutputBuffer

The position of the current byte to write

curCycle - Variable in class loci.formats.in.SDTInfo

Current cycle (accumulation cycle in FLOW mode) - (if multi-cycle measurement).

curPage - Variable in class loci.formats.in.SDTInfo

Current measured page.

currChangingElems - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

current - Variable in class loci.formats.ImageReader

Current form index.

current - Variable in class loci.formats.ImageWriter

Current form index.

current_layer - Variable in class loci.formats.in.ZeissTIFFHandler

current_scaling - Variable in class loci.formats.in.ZeissTIFFHandler

current_shape - Variable in class loci.formats.in.ZeissTIFFHandler

current_tag - Variable in class loci.formats.in.ZeissTIFFHandler

current_tagset - Variable in class loci.formats.in.ZeissTIFFHandler

currentBit - Variable in class loci.common.RandomAccessInputStream

currentBit - Variable in class loci.common.RandomAccessOutputStream

currentBit - Variable in class loci.formats.codec.BitBuffer

Deprecated.

currentBlock - Variable in class loci.formats.in.APNGReader.PNGInputStream

currentByte - Variable in class loci.common.RandomAccessOutputStream

currentByte - Variable in class loci.formats.codec.BitBuffer

Deprecated.

currentChar - Variable in class loci.common.CBZip2InputStream

currentCol - Variable in class loci.formats.in.InCellReader.InCellHandler

currentElement - Variable in class loci.formats.in.AFIReader.AFIHandler

currentElement - Variable in class loci.formats.in.IvisionReader.IvisionHandler

currentField - Variable in class loci.formats.in.InCellReader.InCellHandler

currentFile - Variable in class loci.formats.services.JHDFServiceImpl

currentFile - Variable in class loci.formats.services.NetCDFServiceImpl

currentFragment - Variable in class loci.formats.out.OMEXMLWriter

currentIcsId - Variable in class loci.formats.in.ICSReader

Current filename.

currentId - Variable in class loci.formats.FormatHandler

Name of current file.

currentId - Variable in class loci.formats.ImageReader

Name of current file.

currentId - Variable in class loci.formats.ImageWriter

Name of current file.

currentIdsId - Variable in class loci.formats.in.ICSReader

currentImage - Variable in class loci.formats.in.InCellReader.InCellHandler

currentImage - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

currentImageFile - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

currentInflatedFrame - Variable in class loci.formats.in.OBFReader

currentLength - Variable in class loci.poi.hssf.record.RecordInputStream

currentmodel - Variable in class loci.poi.hssf.eventmodel.ModelFactory

currentName - Variable in class loci.formats.in.OperettaReader.OperettaHandler

currentNo - Variable in class loci.formats.in.AmiraReader.HxRLE

currentNo - Variable in class loci.formats.in.AmiraReader.HxZip

currentPlane - Variable in class loci.formats.in.InCellReader.InCellHandler

currentPos - Variable in class loci.formats.cache.Cache

Current dimensional position.

currentProcessor - Variable in class loci.plugins.util.BFVirtualStack

currentQName - Variable in class loci.common.xml.MetadataHandler

currentQName - Variable in class loci.formats.in.InCellReader.InCellHandler

currentQName - Variable in class loci.formats.in.OMEXMLReader.OMEXMLHandler

currentRow - Variable in class loci.formats.in.InCellReader.InCellHandler

currentRow - Variable in class mdbtools.dbengine.MemoryData

currentRow - Variable in class mdbtools.dbengine.Tests.SimpleData

currentSid - Variable in class loci.poi.hssf.record.RecordInputStream

currentSlice - Variable in class loci.plugins.util.BFVirtualStack

currentState - Variable in class loci.common.CBZip2InputStream

currentSubband - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The subband being dealt with in each component

currentTable - Variable in class loci.tests.testng.Configuration

currentThumbnail - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

currentTile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

currentTile - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

currentTileGrid - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage

currentTileGrid - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

currentValue - Variable in class loci.formats.in.OperettaReader.OperettaHandler

currentValue - Variable in class loci.formats.in.ScanrReader.ScanrHandler

currIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

currLevel - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

currSize - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder

curStep - Variable in class loci.formats.in.SDTInfo

Current step (if multi-step measurement).

curTilePart - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

The current tile part being used

curve - Variable in class loci.formats.codec.NikonCodecOptions

CURVE - Static variable in class loci.formats.in.NikonReader

curve - Variable in class loci.formats.in.NikonReader

CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty

CUSTOM - Static variable in interface jj2000.j2k.wavelet.FilterTypes

User-defined filter: -1

CUSTOM_BITS - Static variable in class loci.formats.in.SimplePCITiffReader

CUSTOM_GRAYSCALE - Static variable in class loci.formats.in.CellSensReader

CUSTOM_RENDERED - Static variable in class loci.formats.tiff.IFD

CUSTOM_RENDERED_CUSTOM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "CustomRendered" tag.

CUSTOM_RENDERED_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "CustomRendered" tag.

customColors - Variable in class loci.plugins.in.ImporterOptions

CustomField - Interface in loci.poi.hssf.record

customFilter(ShortBuffer, Rectangle, Rectangle, int, int, TJTransform) - Method in interface org.libjpegturbo.turbojpeg.TJCustomFilter

A callback function that can be used to modify the DCT coefficients after they are losslessly transformed but before they are transcoded to a new JPEG file.

customNumberFormat - Variable in class loci.poi.hssf.record.LinkedDataRecord

CustomProperties - Class in loci.poi.hpsf

Maintains the instances of CustomProperty that belong to a DocumentSummaryInformation.

CustomProperties() - Constructor for class loci.poi.hpsf.CustomProperties

CustomProperty - Class in loci.poi.hpsf

This class represents custum properties in the document summary information stream.

CustomProperty() - Constructor for class loci.poi.hpsf.CustomProperty

Creates an empty CustomProperty.

CustomProperty(Property) - Constructor for class loci.poi.hpsf.CustomProperty

Creates a CustomProperty without a name by copying the underlying Property' attributes.

CustomProperty(Property, String) - Constructor for class loci.poi.hpsf.CustomProperty

Creates a CustomProperty with a name.

CUT_IN - Static variable in class ome.specification.XMLMockObjects

The default cut-in.

CUT_OUT - Static variable in class ome.specification.XMLMockObjects

The default cut-out.

cutIn - Variable in class loci.formats.in.LeicaHandler.MultiBand

cutIn - Variable in class ome.xml.model.TransmittanceRange

cutInPopulated - Variable in class loci.formats.in.LeicaReader

cutIns - Variable in class loci.formats.in.LIFReader

cutInTolerance - Variable in class ome.xml.model.TransmittanceRange

cutOut - Variable in class loci.formats.in.LeicaHandler.MultiBand

cutOut - Variable in class ome.xml.model.TransmittanceRange

cutOutPopulated - Variable in class loci.formats.in.LeicaReader

cutOuts - Variable in class loci.formats.in.LIFReader

cutOutTolerance - Variable in class ome.xml.model.TransmittanceRange

CV - Static variable in class ome.units.UNITS

CW - Static variable in class ome.units.UNITS

cycle - Variable in class loci.formats.in.PrairieMetadata.Sequence

cycle of this <Sequence>.

cycleMax - Variable in class loci.formats.in.PrairieMetadata

Maximum cycle value.

cycleMin - Variable in class loci.formats.in.PrairieMetadata

Minimum cycle value.

cycles - Variable in class loci.formats.in.SDTInfo

Cycles (accumulation cycles in FLOW mode).

CYTELL_MAGIC_STRING - Static variable in class loci.formats.in.InCellReader

CZI_MAGIC_STRING - Static variable in class loci.formats.in.ZeissCZIReader

D

d(String) - Method in class loci.formats.in.PrairieMetadata

Converts the given string to a Double, or null if incompatible.

d - Variable in class mdbtools.libmdb.MdbAny

D - Static variable in class ome.units.UNITS

DA - Static variable in class loci.formats.in.DicomReader

DAC - Static variable in class loci.formats.codec.LosslessJPEGCodec

DAHZ - Static variable in class ome.units.UNITS

DAILY - Static variable in class loci.plugins.Updater

DAILY_BUILD - Static variable in class loci.formats.UpgradeChecker

Location of the JAR artifacts for Bio-Formats' daily build.

DAM - Static variable in class ome.units.UNITS

DAPA - Static variable in class ome.units.UNITS

DAS - Static variable in class ome.units.UNITS

DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

data - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField

The field data.

data - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

data - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

data - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

data - Variable in class jj2000.j2k.entropy.CodedCBlk

The compressed data

data - Variable in class jj2000.j2k.image.DataBlkFloat

The array where the data is stored

data - Variable in class jj2000.j2k.image.DataBlkInt

The array where the data is stored

data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

The array where the data is stored

data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

The array where the data is stored

data - Variable in class loci.common.CBZip2InputStream

All memory intensive stuff.

data - Variable in class loci.formats.codec.ByteVector

data - Variable in class loci.formats.in.ICSReader

Image data.

data - Variable in class loci.formats.in.IM3Reader

data - Variable in class loci.formats.in.TextReader

Because we have no way of indexing into the text file efficiently in general, we cheat and store the entire file's data in a giant array.

data(String, byte) - Static method in class loci.poi.ddf.EscherProperties

data(String) - Static method in class loci.poi.ddf.EscherProperties

data - Variable in class loci.poi.hssf.record.RecordInputStream

Data - Interface in mdbtools.dbengine

Data represents a set of rows containing data

data - Variable in class mdbtools.dbengine.Tests.SimpleData

data - Variable in class mdbtools.dbengine.Tests.SimpleDataSourceTable

data - Variable in class mdbtools.dbengine.Tests.Test

data - Variable in class mdbtools.examples.MemoryRandomAccess

Data - Class in mdbtools.libmdb

Data() - Constructor for class mdbtools.libmdb.Data

data - Variable in class ome.metakit.MetakitReader

DATA_CHANNEL_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader

DATA_CHANNEL_NAME - Static variable in class loci.formats.in.ZeissLSMReader

DATA_DIR - Static variable in class loci.formats.in.VolocityReader

DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For normal .sdt files (setup + data).

DATA_LABEL_PLACEMENT_ABOVE - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_AUTO - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_AXIS - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_BELOW - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_CHART_DEPENDENT - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_INSIDE - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_OUTSIDE - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_RIGHT - Static variable in class loci.poi.hssf.record.TextRecord

DATA_LABEL_PLACEMENT_USER_MOVED - Static variable in class loci.poi.hssf.record.TextRecord

DATA_SIGNATURE - Static variable in class loci.formats.out.AVIWriter

dataAsString - Static variable in class mdbtools.tests.ColumnTest

DataBlk - Class in jj2000.j2k.image

This is a generic abstract class to store data from a block of an image.

DataBlk() - Constructor for class jj2000.j2k.image.DataBlk

DataBlkFloat - Class in jj2000.j2k.image

This is an implementation of the DataBlk interface for 32 bit floating point data (float).

DataBlkFloat() - Constructor for class jj2000.j2k.image.DataBlkFloat

Creates a DataBlkFloat with 0 dimensions and no data array (i.e.

DataBlkFloat(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkFloat

Creates a DataBlkFloat with the specified dimensions and position.

DataBlkFloat(DataBlkFloat) - Constructor for class jj2000.j2k.image.DataBlkFloat

Copy constructor.

DataBlkInt - Class in jj2000.j2k.image

This is an implementation of the DataBlk interface for signed 32 bit integral data.

DataBlkInt() - Constructor for class jj2000.j2k.image.DataBlkInt

Creates a DataBlkInt with 0 dimensions and no data array (i.e.

DataBlkInt(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkInt

Creates a DataBlkInt with the specified dimensions and position.

DataBlkInt(DataBlkInt) - Constructor for class jj2000.j2k.image.DataBlkInt

Copy constructor.

dataBlockLength - Variable in class loci.formats.in.SDTInfo

dataBlockOffs - Variable in class loci.formats.in.SDTInfo

Offset of the first data block.

dataBlocks - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

DataBrowser - Class in loci.plugins.util

Extension of StackWindow with additional UI trimmings for animation, virtual stack caching options, metadata, and general beautification.

DataBrowser(ImagePlus) - Constructor for class loci.plugins.util.DataBrowser

DataBrowser(ImagePlus, ImageCanvas, String[], int[]) - Constructor for class loci.plugins.util.DataBrowser

DataBrowser(ImagePlus, ImageCanvas, String[], int[], XMLWindow) - Constructor for class loci.plugins.util.DataBrowser

DataConverter - Class in loci.formats.gui

A utility for reorganizing and converting QuickTime movies, TIFF series and other 4D datasets.

DataConverter() - Constructor for class loci.formats.gui.DataConverter

DataConverter.RowPanel - Class in loci.formats.gui

DataConverter.RowPanel() - Constructor for class loci.formats.gui.DataConverter.RowPanel

DataEntryURLBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Data Entry URL Box of JPEG JP2 file format.

DataEntryURLBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from its content data.

DataEntryURLBox(byte, byte[], String) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from its data elements.

DataEntryURLBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from a Node.

dataFile - Variable in class loci.formats.in.NRRDReader

Name of data file, if the current extension is 'nhdr'.

dataFile - Variable in class loci.tests.testng.Configuration

DataFormatRecord - Class in loci.poi.hssf.record

The data format record is used to index into a series.

DataFormatRecord() - Constructor for class loci.poi.hssf.record.DataFormatRecord

DataFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DataFormatRecord

Constructs a DataFormat record and sets its fields appropriately.

dataLabelPlacement - Variable in class loci.poi.hssf.record.TextRecord

dataOffs - Variable in class loci.formats.in.SDTInfo

Offset of the data block from the beginning of the file.

dataOffset - Variable in class loci.formats.in.LiFlimReader

Offset to start of pixel data.

dataOffset - Variable in class loci.formats.in.ZeissCZIReader.Attachment

dataOffset - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

dataPointers - Variable in class loci.formats.in.InveonReader

Dataset - Class in ome.xml.model

Dataset() - Constructor for class ome.xml.model.Dataset

Default constructor.

Dataset(Element, OMEModel) - Constructor for class ome.xml.model.Dataset

Constructs Dataset recursively from an XML DOM tree.

Dataset(Dataset) - Constructor for class ome.xml.model.Dataset

Copy constructor.

datasetDescription - Variable in class loci.formats.FormatReader

Short description of the structure of the dataset.

datasetLinks - Variable in class ome.xml.model.Annotation

datasetLinks - Variable in class ome.xml.model.Image

datasetLinks - Variable in class ome.xml.model.Project

DatasetRef - Class in ome.xml.model

DatasetRef() - Constructor for class ome.xml.model.DatasetRef

Default constructor.

DatasetRef(Element, OMEModel) - Constructor for class ome.xml.model.DatasetRef

Constructs DatasetRef recursively from an XML DOM tree.

DatasetRef(DatasetRef) - Constructor for class ome.xml.model.DatasetRef

Copy constructor.

dataSets - Variable in class loci.formats.in.IM3Reader

datasets - Variable in class ome.xml.model.Experimenter

datasets - Variable in class ome.xml.model.ExperimenterGroup

datasets - Variable in class ome.xml.model.OME

dataSize - Variable in class loci.formats.in.MRWReader

dataSize - Variable in class loci.formats.in.ZeissCZIReader.Attachment

dataSize - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

DataSource - Interface in mdbtools.dbengine

DataSource represents the data store.

dataStore - Variable in class loci.formats.in.PQBinReader

datastreamParser - Variable in class ome.jxr.JXRReader

DatastreamParser - Class in ome.jxr.parser

Parses the initial elements (image header, image plane headers(-s)) of the image codestream.

DatastreamParser(Parser, RandomAccessInputStream) - Constructor for class ome.jxr.parser.DatastreamParser

dataTable - Variable in class loci.poi.hssf.record.LegendRecord

DataTools - Class in loci.common

A utility class with convenience methods for reading, writing and decoding words.

DataTools() - Constructor for class loci.common.DataTools

dataType - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

datatype - Variable in class loci.formats.in.LiFlimReader

datatype - Variable in enum ome.jxr.ifd.PixelType

DATATYPE_INT16 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_INT32 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_INT8 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_KEY - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_REAL32 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_REAL64 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_UINT16 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_UINT32 - Static variable in class loci.formats.in.LiFlimReader

DATATYPE_UINT8 - Static variable in class loci.formats.in.LiFlimReader

dataTypes - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

DATE - Static variable in class loci.formats.FormatTools

Date on which this release was built.

DATE - Static variable in class loci.formats.in.CellSensReader

date - Variable in class loci.formats.in.DicomReader

date - Variable in class loci.formats.in.FEITiffReader

date - Variable in class loci.formats.in.FluoviewReader

date - Variable in class loci.formats.in.LEOReader

date - Variable in class loci.formats.in.MetamorphHandler

date - Variable in class loci.formats.in.ND2Handler

date - Variable in class loci.formats.in.PrairieMetadata

The date of the acquisition.

date - Variable in class loci.formats.in.QuesantReader

date - Variable in class loci.formats.in.SDTInfo

Date of creation.

date - Variable in class loci.formats.in.SimplePCITiffReader

date - Variable in class loci.formats.in.SVSReader

date() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current date

date() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current date

DATE - Static variable in class loci.tests.testng.Configuration

DATE_FORMAT - Static variable in class loci.formats.in.BrukerReader

DATE_FORMAT - Static variable in class loci.formats.in.CellWorxReader

DATE_FORMAT - Static variable in class loci.formats.in.DeltavisionReader

DATE_FORMAT - Static variable in class loci.formats.in.FEITiffReader

DATE_FORMAT - Static variable in class loci.formats.in.FluoviewReader

Date format

DATE_FORMAT - Static variable in class loci.formats.in.FujiReader

DATE_FORMAT - Static variable in class loci.formats.in.FV1000Reader

DATE_FORMAT - Static variable in class loci.formats.in.GelReader

DATE_FORMAT - Static variable in class loci.formats.in.HitachiReader

DATE_FORMAT - Static variable in class loci.formats.in.IvisionReader

DATE_FORMAT - Static variable in class loci.formats.in.KodakReader

DATE_FORMAT - Static variable in class loci.formats.in.L2DReader

DATE_FORMAT - Static variable in class loci.formats.in.LeicaReader

Format for dates.

DATE_FORMAT - Static variable in class loci.formats.in.MetamorphTiffReader

DATE_FORMAT - Static variable in class loci.formats.in.MicromanagerReader

DATE_FORMAT - Static variable in class loci.formats.in.MolecularImagingReader

DATE_FORMAT - Static variable in class loci.formats.in.ND2Handler

DATE_FORMAT - Static variable in class loci.formats.in.PDSReader

DATE_FORMAT - Static variable in class loci.formats.in.PerkinElmerReader

DATE_FORMAT - Static variable in class loci.formats.in.PrairieReader

DATE_FORMAT - Static variable in class loci.formats.in.SBIGReader

DATE_FORMAT - Static variable in class loci.formats.in.SimplePCITiffReader

DATE_FORMAT - Static variable in class loci.formats.in.SpiderReader

DATE_FORMAT - Static variable in class loci.formats.in.SVSReader

DATE_FORMAT - Static variable in class loci.formats.in.TCSReader

DATE_FORMATS - Static variable in class loci.formats.in.BaseTiffReader

DATE_FORMATS - Static variable in class loci.formats.in.ICSReader

DATE_FORMATS - Static variable in class loci.formats.in.TillVisionReader

DATE_TIME - Static variable in class loci.formats.tiff.IFD

DATE_TIME_DIGITIZED - Static variable in class loci.formats.tiff.IFD

DATE_TIME_FORMAT - Static variable in class loci.formats.in.GelReader

DATE_TIME_ORIGINAL - Static variable in class loci.formats.tiff.IFD

dates - Variable in class loci.formats.in.TillVisionReader

datestamp - Variable in class loci.formats.in.TCSReader

dateToFileTime(Date) - Static method in class loci.poi.hpsf.Util

Converts a Date into a filetime.

DateTools - Class in loci.common

A utility class with convenience methods for working with dates.

DateTools() - Constructor for class loci.common.DateTools

DateWindow1904Record - Class in loci.poi.hssf.record

Title: Date Window 1904 Flag record

DateWindow1904Record() - Constructor for class loci.poi.hssf.record.DateWindow1904Record

DateWindow1904Record(RecordInputStream) - Constructor for class loci.poi.hssf.record.DateWindow1904Record

Constructs a DateWindow1904 record and sets its fields appropriately.

datFile - Variable in class loci.formats.in.InveonReader

datFile - Variable in class loci.formats.in.UnisokuReader

DatRecord - Class in loci.poi.hssf.record

The dat record is used to store options for the chart.

DatRecord() - Constructor for class loci.poi.hssf.record.DatRecord

DatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DatRecord

Constructs a Dat record and sets its fields appropriately.

DAV - Static variable in class ome.units.UNITS

DAW - Static variable in class ome.units.UNITS

DAY_MILLISECONDS - Static variable in class loci.poi.hssf.usermodel.HSSFDateUtil

daysInPriorYears(int) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Return the number of days in prior years since 1900

dayStart(Calendar) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

db_key - Variable in class mdbtools.libmdb.MdbFile

db_passwd - Variable in class mdbtools.libmdb.MdbFile

DBAR - Static variable in class ome.units.UNITS

DBCELL_CAPACITY - Static variable in class loci.poi.hssf.record.IndexRecord

DBCellRecord - Class in loci.poi.hssf.record

Title: DBCell Record Description: Used by Excel and other MS apps to quickly find rows in the sheets.

DBCellRecord() - Constructor for class loci.poi.hssf.record.DBCellRecord

DBCellRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DBCellRecord

Constructs a DBCellRecord and sets its fields appropriately

dbi - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Data block used only to store coordinates of the buffered blocks

dbi - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Data block used only to store coordinates and progressiveness of the buffered blocks

dBlock - Variable in class loci.formats.in.GIFReader

Current data block.

DC_OFFSET - Static variable in class jj2000.j2k.image.input.ImgReaderPGM

DC offset value used when reading image

dcOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

deadTimeComp - Variable in class loci.formats.in.SDTInfo

DEBUG - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

debug - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

DEBUG - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor

debug - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

debug - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

debug(String) - Static method in class loci.plugins.BF

DEBUG - Static variable in class loci.poi.hssf.model.Workbook

DEBUG - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

DEBUG - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

DEBUG - Static variable in class loci.poi.util.POILogger

DebugTools - Class in loci.common

A utility class with convenience methods for debugging.

DebugTools() - Constructor for class loci.common.DebugTools

dec1616(int) - Method in class loci.poi.ddf.EscherDump

Straight conversion from OO.

DEC_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "component default" specified decomposition

DEC_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "main default" specified decomposition

DEC_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "tile and component specific" specified decomposition

DEC_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "tile specific default" specified decomposition

DECI(Unit<T>) - Static method in class ome.units.UNITS

DecLyrdCBlk - Class in jj2000.j2k.entropy.decoder

This class stores coded (compressed) code-blocks that are organized in layers.

DecLyrdCBlk() - Constructor for class jj2000.j2k.entropy.decoder.DecLyrdCBlk

decode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the input bit stream (located in the ImageInputStream stream, at offset offset, and continuing for byteCount bytes) into the output BufferedImage image.

decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

decode(byte[], int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

decode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor

decode(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

decode(RandomAccessInputStream) - Method in class loci.formats.codec.HuffmanCodec.Decoder

decode(APNGReader.PNGInputStream) - Method in class loci.formats.in.APNGReader

decode(APNGReader.PNGInputStream, int, int) - Method in class loci.formats.in.APNGReader

decode() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Convert raw data to escher records.

decode12BitCamera(byte[], int) - Method in class loci.formats.in.ZeissCZIReader

decodeBlackCodeWord() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeDate(int) - Static method in class loci.formats.in.MetamorphReader

Converts a Julian date value into a human-readable string.

decodeFlags(int) - Method in class loci.poi.ddf.EscherSpRecord

Converts the shape flags into a more descriptive name.

decodeImageData() - Method in class loci.formats.in.GIFReader

Decodes LZW image data into a pixel array.

decodeNextScanline(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeNumber(int) - Static method in class loci.poi.hssf.util.RKUtil

Do the dirty work of decoding; made a private static method to facilitate testing the algorithm

decoder - Variable in class loci.formats.in.TileJPEGReader

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided byte array b, starting at the offset given by dstOffset.

decodeRaw(short[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided short array s, starting at the offset given by dstOffset.

decodeRaw(int[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided int array i, starting at the offset given by dstOffset.

decodeRaw(float[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided float array f, starting at the offset given by dstOffset.

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

decodeRLE() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeRLE4(int, int, byte[], byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

decodeRLE8(int, int, byte[], byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

DecoderSpecs - Class in jj2000.j2k.decoder

This class holds references to each module specifications used in the decoding chain.

DecoderSpecs(int, int) - Constructor for class jj2000.j2k.decoder.DecoderSpecs

Initialize all members with the given number of tiles and components.

decodeSymbol(int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Arithmetically decodes one symbol from the bit stream with the given context and returns its decoded value.

decodeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

This function performs the arithmetic decoding.

decodeT4() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeT6() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodeTile(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

decodeTile(int, int, int) - Method in class loci.formats.in.CellSensReader

decodeTime(int) - Static method in class loci.formats.in.MetamorphReader

Converts a time value in milliseconds into a human-readable string.

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class com.luratech.lwf.lwfDecoder

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int).

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl

decodeToMemoryGray8(byte[], int, int, int) - Method in class com.luratech.lwf.lwfDecoder

decodeToMemoryGray8(byte[], int, int, int) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.decodeToMemoryGray8(byte[], int, int, int).

decodeToMemoryGray8(byte[], int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl

decodeWhiteCodeWord() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

decodingRate - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Specifies the decoding rate in bits per pixel (bpp) where the number of pixels is related to the image's original size (Note: this number is not affected by resolution).

decomp(Subband, int, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This function decomposes the mask for a node in the subband tree.

decomposedComps - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

Block storing the full band decomposition for each component.

decompositionLevel - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies the number of wavelet decomposition levels to apply to the image.

DECOMPR_MASKS - Static variable in class loci.formats.codec.LZWCodec

Masks for reading bits in decompressor.

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.Base64Codec

decompress(byte[]) - Method in class loci.formats.codec.BaseCodec

decompress(byte[][]) - Method in class loci.formats.codec.BaseCodec

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.BaseCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.BaseCodec

decompress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec

2D data block decoding default implementation.

decompress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[]) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[][]) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(RandomAccessInputStream, CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses data from the given RandomAccessInputStream.

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

The CodecOptions parameter must be an instance of HuffmanCodecOptions, and should have the following fields set: table bitsPerSample maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEGCodec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec

The CodecOptions parameter should have the following fields set: interleaved littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

The CodecOptions parameter should have the following fields set: maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZOCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZWCodec

The CodecOptions parameter should have the following fields set: maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MJPBCodec

The CodecOptions parameter must be an instance of MJPBCodecOptions, and should have the following fields set: interlaced width height bitsPerSample littleEndian interleaved

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSRLECodec

The CodecOptions parameter should have the following fields set: width height previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSVideoCodec

The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.NikonCodec

The CodecOptions parameter must be an instance of NikonCodecOptions, and should have the following fields set: lossless vPredictor curve split bitsPerSample maxBytes width height

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PackbitsCodec

The CodecOptions parameter should have the following fields set: maxBytes

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PassthroughCodec

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.QTRLECodec

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec

The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.RPZACodec

The CodecOptions parameter should have the following fields set: width height

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.TargaRLECodec

The CodecOptions parameter should have the following fields set: maxBytes CodecOptions.bitsPerSample

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.ZlibCodec

decompress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Decodes a strip of data.

decompress(byte[], int, int) - Static method in class loci.poi.ddf.EscherBlipWMFRecord

Decompresses a byte array.

decompress(byte[], int, int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and output a decompressed image to the given destination buffer.

decompress(int, int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and return a buffer containing the decompressed image.

decompress(BufferedImage, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and output a decompressed image to the given BufferedImage instance.

decompress(int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and return a BufferedImage instance containing the decompressed image.

decompress(byte[], int, byte[], int, int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

decompress(byte[], int, int[], int, int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

decompressHeader(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

decompressor - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

decompressor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

decompressor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

decompressor - Variable in class loci.formats.in.AmiraReader.HxZip

decompressToYUV(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and output a YUV planar image to the given destination buffer.

decompressToYUV(int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Decompress the JPEG source image associated with this decompressor instance and return a buffer containing a YUV planar image.

decompressToYUV(byte[], int, byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

deconvolutionLogFile - Variable in class loci.formats.in.DeltavisionReader

decSpec - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

decSpec - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The decoder specifications

decSpec - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The decoder specifications

decSpec - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Reference to decoder specifications

decSpec - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

The decoder spec

decSpec - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The decoder specifications

DEEP_GREY_10 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_11 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_12 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_13 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_14 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_15 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_16 - Static variable in class loci.formats.in.OpenlabReader

DEEP_GREY_9 - Static variable in class loci.formats.in.OpenlabReader

def - Variable in class jj2000.j2k.ModuleSpec

Default value for each tile-component

DEF_BUF_LEN - Static variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

The default buffer length, 1024 bytes

DEF_THREADS_NUM - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The default value for the property in THREADS_PROP_NAME: 0

default_backend - Variable in class mdbtools.libmdb.MdbFile

default_backend - Variable in class mdbtools.libmdb.MdbHandle

DEFAULT_BACKGROUND_COLOR - Static variable in class loci.formats.in.CellSensReader

DEFAULT_BLOCK_SIZE - Static variable in class loci.common.NIOInputStream

Block size to use when searching through the stream.

DEFAULT_BLOCK_SIZE - Static variable in class loci.common.RandomAccessInputStream

Block size to use when searching through the stream.

DEFAULT_BUCKET_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTRecord

DEFAULT_BYTES_PER_STRIP - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

DEFAULT_CALLER - Static variable in class loci.formats.UpgradeChecker

Value of "bioformats.caller" for Bio-Formats utilities.

DEFAULT_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Default character set.

DEFAULT_COLOR - Static variable in class ome.specification.XMLMockObjects

The default color.

DEFAULT_COLORS - Static variable in class loci.plugins.in.ImporterOptions

Default custom colors for each channel.

DEFAULT_DIMENSION_ORDER - Static variable in class loci.formats.in.FakeReader

DEFAULT_DISPLAY_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

DEFAULT_HEADER - Static variable in class loci.common.IniTable

Default header name when no header is available.

DEFAULT_IMAGE - Static variable in class loci.formats.in.CellSensReader

DEFAULT_LINEARIZATION_TABLE - Static variable in class loci.formats.codec.NikonCodec

DEFAULT_MINIMUM_ELAPSED - Static variable in class loci.formats.Memoizer

Default value for Memoizer.minimumElapsed if none is provided in the constructor.

DEFAULT_PIXEL_TYPE - Static variable in class loci.formats.in.FakeReader

DEFAULT_PROPERTIES_FILE - Static variable in class loci.common.services.ServiceFactory

Default service properties file.

DEFAULT_RANGE - Static variable in class loci.formats.cache.CacheStrategy

Default cache range.

DEFAULT_RGB_CHANNEL_COUNT - Static variable in class loci.formats.in.FakeReader

DEFAULT_SAMPLE_IFD - Static variable in class loci.formats.in.CellSensReader

DEFAULT_SIZE_C - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_T - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_X - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_Y - Static variable in class loci.formats.in.FakeReader

DEFAULT_SIZE_Z - Static variable in class loci.formats.in.FakeReader

DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.DocumentSummaryInformation

The document name a document summary information stream usually has in a POIFS filesystem.

DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.SummaryInformation

The document name a summary information stream usually has in a POIFS filesystem.

DEFAULT_TYPES - Static variable in class loci.tests.testng.ConversionTest

DEFAULT_VALUE - Static variable in class loci.poi.hssf.record.DeltaRecord

DEFAULT_WRITE_BUFFER_SIZE - Static variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream

The size of the write buffer.

defaultBase - Variable in class loci.poi.hssf.record.AxisOptionsRecord

defaultBufferSize - Static variable in class loci.common.NIOFileHandle

Default NIO buffer size to facilitate buffered I/O.

defaultClasses - Static variable in class loci.formats.ImageReader

Default list of reader classes, for use with noargs constructor.

defaultClasses - Static variable in class loci.formats.ImageWriter

Default list of writer classes, for use with noargs constructor.

defaultcolwidth - Variable in class loci.poi.hssf.model.Sheet

DefaultColWidthRecord - Class in loci.poi.hssf.record

Title: Default Column Width Record

DefaultColWidthRecord() - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord

DefaultColWidthRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord

Constructs a DefaultColumnWidth record and sets its fields appropriately.

defaultCross - Variable in class loci.poi.hssf.record.AxisOptionsRecord

DefaultDataLabelTextPropertiesRecord - Class in loci.poi.hssf.record

The default data label text properties record identifies the text characteristics of the preceeding text record.

DefaultDataLabelTextPropertiesRecord() - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

DefaultDataLabelTextPropertiesRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Constructs a DefaultDataLabelTextProperties record and sets its fields appropriately.

defaultDateEnabled - Static variable in class loci.formats.MetadataTools

defaultDateSettings - Variable in class loci.poi.hssf.record.AxisOptionsRecord

DefaultEscherRecordFactory - Class in loci.poi.ddf

Generates escher records when provided the byte array containing those records.

DefaultEscherRecordFactory() - Constructor for class loci.poi.ddf.DefaultEscherRecordFactory

Creates an instance of the escher record factory

defaultExposureTime - Variable in class loci.formats.in.CellSensReader.Pyramid

defaultFactory - Static variable in class loci.common.services.ServiceFactory

Default service factory.

defaultHeader - Variable in class loci.poi.hssf.record.WindowTwoRecord

defaultLength - Variable in class loci.common.NIOFileHandle

The original length of the file.

defaultMajor - Variable in class loci.poi.hssf.record.AxisOptionsRecord

defaultMap - Static variable in class loci.poi.hpsf.wellknown.SectionIDMap

The default section ID map.

defaultMaximum - Variable in class loci.poi.hssf.record.AxisOptionsRecord

DefaultMetadataOptions - Class in loci.formats.in

DefaultMetadataOptions() - Constructor for class loci.formats.in.DefaultMetadataOptions

Construct a new DefaultMetadataOptions.

DefaultMetadataOptions(MetadataLevel) - Constructor for class loci.formats.in.DefaultMetadataOptions

Construct a new DefaultMetadataOptions.

defaultMinimum - Variable in class loci.poi.hssf.record.AxisOptionsRecord

defaultMinMax(int) - Static method in class loci.formats.FormatTools

Get the default range for the specified pixel type.

defaultMinorUnit - Variable in class loci.poi.hssf.record.AxisOptionsRecord

defaultPlotDimensions - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

defaultrowheight - Variable in class loci.poi.hssf.model.Sheet

DefaultRowHeightRecord - Class in loci.poi.hssf.record

Title: Default Row Height Record Description: Row height for rows with undefined or not explicitly defined heights.

DefaultRowHeightRecord() - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord

DefaultRowHeightRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord

Constructs a DefaultRowHeight record and sets its fields appropriately.

defaultRWBufferSize - Static variable in class loci.common.NIOFileHandle

Default NIO buffer size to facilitate buffered I/O for read/write streams.

defaultValue - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

defaultValue - Variable in class jj2000.j2k.entropy.CBlkSizeSpec

defaultValue - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec

defaultValue - Variable in class jj2000.j2k.quantization.GuardBitsSpec

defaultValue - Variable in class jj2000.j2k.quantization.QuantStepSizeSpec

defaultValue - Variable in class loci.plugins.prefs.BooleanOption

The option's default value.

defaultValue - Variable in class loci.plugins.prefs.DoubleOption

The option's default value.

defaultValue - Variable in class loci.plugins.prefs.StringOption

The option's default value.

defimgn - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Nominal range bit of the component defining default values in QCD for main header

DEFINITION - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

deflater - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater

defMsgLogger - Static variable in class jj2000.j2k.util.FacilityManager

The default logger, for threads that have none associated with them

deftilenr - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Nominal range bit of the component defining default values in QCD for tile headers

defWatchProg - Static variable in class jj2000.j2k.util.FacilityManager

The default ProgressWatch for threads that have none associated with them.

DEG - Static variable in class ome.units.UNITS

DEGREEC - Static variable in class ome.units.UNITS

DEGREEF - Static variable in class ome.units.UNITS

DEGREER - Static variable in class ome.units.UNITS

DEKA(Unit<T>) - Static method in class ome.units.UNITS

delayTime - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

delegate - Variable in class loci.formats.in.SimplePCITiffReader

delegate - Variable in class loci.formats.services.LuraWaveServiceImpl

LuraWave decoder delegate.

delegate - Variable in class loci.poi.hpsf.SpecialPropertySet

The "real" property set SpecialPropertySet delegates to.

DelegateReader - Class in loci.formats

DelegateReader is a file format reader that selects which reader to use for a format if there are two readers which handle the same format.

DelegateReader(String, String) - Constructor for class loci.formats.DelegateReader

Constructs a new delegate reader.

DelegateReader(String, String[]) - Constructor for class loci.formats.DelegateReader

Constructs a new delegate reader.

delegates - Variable in class ome.xml.meta.AggregateMetadata

The active metadata store delegates.

delete() - Method in class loci.common.Location

Deletes this file.

delete() - Method in interface loci.poi.poifs.filesystem.Entry

Delete this Entry.

delete() - Method in class loci.poi.poifs.filesystem.EntryNode

Delete this Entry.

deleteChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty

Delete a Property

DeletedArea3DPtg - Class in loci.poi.hssf.record.formula

Title: Deleted Area 3D Ptg - 3D referecnce (Sheet + Area)

DeletedArea3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg

Creates new DeletedArea3DPtg

DeletedArea3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg

deleteData(String) - Method in class loci.tests.IOTester

DeletedRef3DPtg - Class in loci.poi.hssf.record.formula

Title: Deleted Reference 3D Ptg

DeletedRef3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg

Creates new DeletedRef3DPtg

DeletedRef3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg

deleteEntry(EntryNode) - Method in class loci.poi.poifs.filesystem.DirectoryNode

Delete an entry

deleteOnExit() - Method in class loci.common.Location

Request that this file be deleted when the JVM terminates.

deleteQuietly(File) - Method in class loci.formats.Memoizer

Attempts to delete an existing file, logging at warn if the deletion returns false or at error if an exception is thrown.

delFF - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput

Flag that indicates if an FF has been delayed

delFF - Variable in class jj2000.j2k.entropy.encoder.MQCoder

If a 0xFF byte has been delayed and not yet been written to the output (in the MQ we can never have more than 1 0xFF byte in a row).

DELIMITERS - Static variable in class loci.formats.in.ImarisHDFReader

DELTA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the fourth lifting step coefficient

DELTA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the fourth lifting step coefficient

DELTA_T - Static variable in class loci.tests.testng.Configuration

DeltaRecord - Class in loci.poi.hssf.record

Title: Delta Record

DeltaRecord() - Constructor for class loci.poi.hssf.record.DeltaRecord

DeltaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DeltaRecord

Constructs a Delta record and sets its fields appropriately.

deltaT - Variable in class loci.formats.in.FV1000Reader.PlaneData

deltaT - Variable in class loci.formats.in.InCellReader.Image

deltaT - Variable in class loci.formats.in.IvisionReader

deltaT - Variable in class loci.formats.in.NiftiReader

deltaT - Variable in class loci.formats.in.ScanrReader

deltaT - Variable in class ome.xml.model.Plane

DeltavisionReader - Class in loci.formats.in

DeltavisionReader is the file format reader for Deltavision files.

DeltavisionReader() - Constructor for class loci.formats.in.DeltavisionReader

Constructs a new Deltavision reader.

DeltavisionReader.DVExtHdrFields - Class in loci.formats.in

This private class structure holds the details for the extended header.

DeltavisionReader.DVExtHdrFields(RandomAccessInputStream) - Constructor for class loci.formats.in.DeltavisionReader.DVExtHdrFields

denom - Variable in class loci.formats.tiff.TiffRational

Components of the rational's fractional representation.

denom - Variable in class org.libjpegturbo.turbojpeg.TJScalingFactor

Denominator

denomH - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

denominator - Variable in class ome.jxr.ifd.JXRRational

denomV - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

DependencyException - Exception in loci.common.services

Exception thrown when there is an object instantiation error or error processing dependencies.

DependencyException(String) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(String, Class<? extends Service>) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(String, Class<? extends Service>, Throwable) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(Throwable) - Constructor for exception loci.common.services.DependencyException

Default constructor.

depth - Variable in class loci.formats.tools.AmiraParameters

deq - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Dequantizer - Class in jj2000.j2k.quantization.dequantizer

This is the abstract class from which all dequantizers must inherit.

Dequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Constructor for class jj2000.j2k.quantization.dequantizer.Dequantizer

Initializes the source of compressed data.

DequantizerParams - Class in jj2000.j2k.quantization.dequantizer

This is the generic ineterface for dequantization parameters.

DequantizerParams() - Constructor for class jj2000.j2k.quantization.dequantizer.DequantizerParams

derived - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Whether or not the components in the current tile uses a derived quantization step size (only relevant in non reversible quantization mode).

desc - Variable in class loci.formats.gui.ComboFileFilter

Description.

desc - Variable in class loci.formats.gui.ExtensionFileFilter

Description.

desc - Variable in class loci.formats.gui.FormatFileFilter

Description.

description - Variable in class loci.formats.in.NiftiReader

description() - Method in interface loci.formats.in.PrairieMetadata.Value

description - Variable in class loci.formats.in.PrairieMetadata.ValueItem

description() - Method in class loci.formats.in.PrairieMetadata.ValueItem

description() - Method in class loci.formats.in.PrairieMetadata.ValueTable

description - Variable in class loci.formats.in.TiffReader

description - Variable in class loci.formats.in.VolocityReader.Stack

description - Variable in class loci.formats.in.ZeissCZIReader

description - Variable in class loci.formats.in.ZeissLSMReader.Recording

description - Variable in class loci.poi.ddf.EscherPropertyMetaData

DESCRIPTION - Static variable in class loci.tests.testng.Configuration

description - Variable in class ome.xml.model.Annotation

description - Variable in class ome.xml.model.Dataset

description - Variable in class ome.xml.model.Experiment

description - Variable in class ome.xml.model.ExperimenterGroup

description - Variable in class ome.xml.model.Image

description - Variable in class ome.xml.model.MicrobeamManipulation

description - Variable in class ome.xml.model.Plate

description - Variable in class ome.xml.model.PlateAcquisition

description - Variable in class ome.xml.model.Project

description - Variable in class ome.xml.model.Reagent

description - Variable in class ome.xml.model.ROI

description - Variable in class ome.xml.model.Screen

descriptions - Variable in class loci.formats.in.LIFReader

DESERIALISE - Static variable in class loci.poi.hssf.record.AbstractEscherHolderRecord

deserializer - Variable in class loci.poi.hssf.record.SSTRecord

DEST_DISTANCE_REF_KILOMETERS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

DEST_DISTANCE_REF_KNOTS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

DEST_DISTANCE_REF_MILES - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

destBands - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

source and destination bands.

destBands - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

source and destination bands.

destBitsPerSampleCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

destImage - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

destImage - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

destinationBands - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The sequence of destination bands to receive the source data.

destinationBands - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

destinationBands - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

destinationBands - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

destinationBandsCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

The destination region.

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

The destination region.

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

destinationRegion - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage

The destination bounds.

destroy() - Method in class org.libjpegturbo.turbojpeg.TJCompressor

destroy() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

details - Variable in class loci.formats.in.PerkinElmerReader

detector - Variable in class loci.formats.in.LeicaHandler.Channel

detector - Variable in class loci.formats.in.VolocityReader.Stack

DETECTOR - Static variable in class loci.tests.testng.Configuration

Detector - Class in ome.xml.model

Detector() - Constructor for class ome.xml.model.Detector

Default constructor.

Detector(Element, OMEModel) - Constructor for class ome.xml.model.Detector

Constructs Detector recursively from an XML DOM tree.

Detector(Detector) - Constructor for class ome.xml.model.Detector

Copy constructor.

detector - Variable in class ome.xml.model.DetectorSettings

DETECTOR_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of a detector.

detectorChannel - Variable in class loci.formats.in.LeicaHandler

detectorGain - Variable in class loci.formats.in.BaseZeissReader

detectorID - Variable in class loci.formats.in.MicromanagerReader.Position

detectorIndexes - Variable in class loci.formats.in.LIFReader

detectorIndices - Variable in class loci.formats.in.LeicaHandler

detectorLinks - Variable in class ome.xml.model.Annotation

detectorManufacturer - Variable in class loci.formats.in.FluoviewReader

detectorManufacturer - Variable in class loci.formats.in.MicromanagerReader.Position

detectorModel - Variable in class loci.formats.in.MicromanagerReader.Position

detectorModels - Variable in class loci.formats.in.LIFReader

detectorOffset - Variable in class loci.formats.in.BaseZeissReader

detectorOffset - Variable in class loci.formats.in.OpenlabReader

detectorOffsets - Variable in class loci.formats.in.LIFReader

detectorRefs - Variable in class loci.formats.in.ZeissCZIReader

detectors - Variable in class loci.formats.in.FEITiffReader

detectors - Variable in class loci.formats.in.LeicaHandler

detectors - Variable in class loci.formats.in.LeicaReader

detectors - Variable in class ome.xml.model.Instrument

detectorSettings - Variable in class ome.xml.model.Channel

DetectorSettings - Class in ome.xml.model

DetectorSettings() - Constructor for class ome.xml.model.DetectorSettings

Default constructor.

DetectorSettings(Element, OMEModel) - Constructor for class ome.xml.model.DetectorSettings

Constructs DetectorSettings recursively from an XML DOM tree.

DetectorSettings(DetectorSettings) - Constructor for class ome.xml.model.DetectorSettings

Copy constructor.

DetectorType - Enum in ome.xml.model.enums

DetectorType(String) - Constructor for enum ome.xml.model.enums.DetectorType

DetectorTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for DetectorType.

DetectorTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

determineType(CellValueRecordInterface) - Method in class loci.poi.hssf.usermodel.HSSFCell

used internally -- given a cell value record, figure out its type

detType - Variable in class loci.formats.in.SDTInfo

Detector type (SPC-930 in camera mode).

DEVICE_ID - Static variable in class loci.formats.in.CellSensReader

DEVICE_MANUFACTURER - Static variable in class loci.formats.in.CellSensReader

DEVICE_NAME - Static variable in class loci.formats.in.CellSensReader

DEVICE_SUBTYPE - Static variable in class loci.formats.in.CellSensReader

deviceclip - Variable in class loci.poi.hssf.usermodel.EscherGraphics2d

deviceIDs - Variable in class loci.formats.in.CellSensReader.Pyramid

deviceManufacturers - Variable in class loci.formats.in.CellSensReader.Pyramid

deviceNames - Variable in class loci.formats.in.CellSensReader.Pyramid

deviceTypes - Variable in class loci.formats.in.CellSensReader.Pyramid

devModel - Variable in class loci.formats.in.LeicaSCNReader.Image

devVersion - Variable in class loci.formats.in.LeicaSCNReader.Image

DG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

dgg - Variable in class loci.poi.hssf.model.DrawingManager

dgg - Variable in class loci.poi.hssf.model.DrawingManager2

DGG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord

dgMap - Variable in class loci.poi.hssf.model.DrawingManager

DHP - Static variable in class loci.formats.codec.LosslessJPEGCodec

DHT - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

DHT - Static variable in class loci.formats.codec.LosslessJPEGCodec

DHZ - Static variable in class ome.units.UNITS

dialog - Variable in class loci.plugins.in.ThumbLoader

dialog - Static variable in class loci.poi.hssf.record.WSBoolRecord

DIAMONDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DIAMONDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Diamonds

dichroic - Variable in class loci.formats.in.FlexReader.FilterGroup

Dichroic - Class in ome.xml.model

Dichroic() - Constructor for class ome.xml.model.Dichroic

Default constructor.

Dichroic(Element, OMEModel) - Constructor for class ome.xml.model.Dichroic

Constructs Dichroic recursively from an XML DOM tree.

Dichroic(Dichroic) - Constructor for class ome.xml.model.Dichroic

Copy constructor.

dichroic - Variable in class ome.xml.model.FilterSet

dichroic - Variable in class ome.xml.model.LightPath

dichroicLinks - Variable in class ome.xml.model.Annotation

dichroicMap - Variable in class loci.formats.in.FlexReader

dichroicModels - Variable in class loci.formats.in.NikonTiffReader

DichroicRef - Class in ome.xml.model

DichroicRef() - Constructor for class ome.xml.model.DichroicRef

Default constructor.

DichroicRef(Element, OMEModel) - Constructor for class ome.xml.model.DichroicRef

Constructs DichroicRef recursively from an XML DOM tree.

DichroicRef(DichroicRef) - Constructor for class ome.xml.model.DichroicRef

Copy constructor.

dichroics - Variable in class ome.xml.model.Instrument

DICOM_MAGIC_STRING - Static variable in class loci.formats.in.DicomReader

DICOM_SUFFIXES - Static variable in class loci.formats.in.DicomReader

DicomReader - Class in loci.formats.in

DicomReader is the file format reader for DICOM files.

DicomReader() - Constructor for class loci.formats.in.DicomReader

Constructs a new DICOM reader.

dictionary - Variable in class loci.poi.hpsf.Section

Maps property IDs to section-private PID strings.

dictionaryIDToName - Variable in class loci.poi.hpsf.CustomProperties

Maps property IDs to property names.

dictionaryNameToID - Variable in class loci.poi.hpsf.CustomProperties

Maps property names to property IDs.

did_first - Static variable in class mdbtools.libmdb.backend

dieIfClosed() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

diff - Variable in class loci.formats.in.BioRadGelReader

difference(byte[], IFD) - Static method in enum loci.formats.tiff.TiffCompression

Performs in-place differencing according to the given predictor value.

DIFFERENTIAL_CORRECTION_APPLIED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDifferential" tag.

DIFFERENTIAL_CORRECTION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDifferential" tag.

DIGITAL_ZOOM_RATIO - Static variable in class loci.formats.tiff.IFD

digits(int) - Static method in class loci.plugins.in.ImporterMetadata

Computes the given value's number of digits.

dilate() - Method in class loci.plugins.util.RecordedImageProcessor

dim - Variable in class loci.poi.hssf.util.AreaReference

DIM_INDEX_1 - Static variable in class loci.formats.in.CellSensReader

DIM_INDEX_2 - Static variable in class loci.formats.in.CellSensReader

DIMDESCR - Static variable in class loci.formats.in.LeicaReader

dimension - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry

dimension - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

DIMENSION_DESCRIPTION_VOLUME - Static variable in class loci.formats.in.CellSensReader

DIMENSION_INCREMENT_ID - Static variable in class loci.formats.in.CellSensReader

DIMENSION_MEANING - Static variable in class loci.formats.in.CellSensReader

DIMENSION_NAME - Static variable in class loci.formats.in.CellSensReader

DIMENSION_NAMES - Static variable in class loci.formats.in.LeicaReader

DIMENSION_ORDER - Static variable in class loci.tests.testng.Configuration

DIMENSION_ORDER - Static variable in class ome.specification.XMLMockObjects

The default dimension order.

DIMENSION_ORDER_ATTRIBUTE - Static variable in class ome.specification.XMLWriter

Identifies the DimensionOrder attribute.

DIMENSION_SIZE - Static variable in class loci.formats.in.CellSensReader

DIMENSION_START_ID - Static variable in class loci.formats.in.CellSensReader

DIMENSION_VALUE_ID - Static variable in class loci.formats.in.CellSensReader

dimensionCount - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

dimensionEntries - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

dimensionLength - Variable in class loci.formats.out.ICSWriter

dimensionM - Variable in class loci.formats.in.ZeissLSMReader

dimensionOffset - Variable in class loci.formats.out.ICSWriter

dimensionOrder - Variable in class loci.formats.CoreMetadata

Order in which dimensions are stored.

dimensionOrder - Variable in class loci.formats.in.FluoviewReader

DimensionOrder - Enum in ome.xml.model.enums

DimensionOrder(String) - Constructor for enum ome.xml.model.enums.DimensionOrder

dimensionOrder - Variable in class ome.xml.model.Pixels

DimensionOrderEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for DimensionOrder.

DimensionOrderEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

dimensionOrdering - Variable in class loci.formats.in.CellSensReader.Pyramid

dimensionP - Variable in class loci.formats.in.ZeissLSMReader

DIMENSIONS_STRING - Static variable in class loci.formats.in.KodakReader

DimensionsRecord - Class in loci.poi.hssf.record

Title: Dimensions Record

DimensionsRecord() - Constructor for class loci.poi.hssf.record.DimensionsRecord

DimensionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DimensionsRecord

Constructs a Dimensions record and sets its fields appropriately.

DimensionSwapper - Class in loci.formats

Handles swapping the dimension order of an image series.

DimensionSwapper() - Constructor for class loci.formats.DimensionSwapper

Constructs a DimensionSwapper around a new image reader.

DimensionSwapper(IFormatReader) - Constructor for class loci.formats.DimensionSwapper

Constructs a DimensionSwapper with the given reader.

dimensionSwapper - Variable in class loci.plugins.in.ImportProcess

dimensionTag - Variable in class loci.formats.in.CellSensReader

dimOrder - Variable in class loci.formats.AxisGuesser

Original ordering of internal dimensional axes.

dims - Variable in class loci.formats.in.LeicaSCNReader.Pixels

dims - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling

dims - Variable in class loci.poi.hssf.model.Sheet

dimsloc - Variable in class loci.poi.hssf.model.Sheet

dir - Variable in class loci.formats.in.VolocityReader

dir - Static variable in class loci.poi.util.TempFile

DIRECTION_REF_MAGNETIC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSTrackRef", "GPSImgDirectionRef", and "GPSDestBearingRef" tags.

DIRECTION_REF_TRUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSTrackRef", "GPSImgDirectionRef", and "GPSDestBearingRef" tags.

directory - Variable in class loci.formats.Memoizer

Directory where all memo files should be created.

directory - Variable in class loci.formats.services.EXIFServiceImpl

DIRECTORY_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants

directoryEntry - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

DirectoryEntry - Interface in loci.poi.poifs.filesystem

This interface defines methods specific to Directory objects managed by a Filesystem instance.

directoryList - Variable in class loci.formats.in.CellWorxReader

DirectoryNode - Class in loci.poi.poifs.filesystem

Simple implementation of DirectoryEntry

DirectoryNode(DirectoryProperty, POIFSFileSystem, DirectoryNode) - Constructor for class loci.poi.poifs.filesystem.DirectoryNode

create a DirectoryNode.

directoryPosition - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

DirectoryProperty - Class in loci.poi.poifs.property

Directory property

DirectoryProperty(String) - Constructor for class loci.poi.poifs.property.DirectoryProperty

Default constructor

DirectoryProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DirectoryProperty

reader constructor

DirectoryProperty.PropertyComparator - Class in loci.poi.poifs.property

DirectoryProperty.PropertyComparator() - Constructor for class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

directoryRoot - Variable in class loci.formats.tools.FakeImage

dirty - Variable in class loci.formats.cache.CacheStrategy

Whether load order array needs to be recomputed before building the next load list.

dirty - Variable in class loci.poi.hpsf.MutableSection

If the "dirty" flag is true, the section's size must be (re-)calculated before the section is written.

dirtyByte - Variable in class loci.common.RandomAccessOutputStream

display(PrintWriter, int) - Method in class loci.poi.ddf.EscherContainerRecord

display(PrintWriter, int) - Method in class loci.poi.ddf.EscherRecord

The display methods allows escher variables to print the record names according to their hierarchy.

DISPLAY_COLOR - Static variable in class loci.formats.in.CellSensReader

DISPLAY_CONTRAST_BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader

DISPLAY_GAMMA_CORRECTION - Static variable in class loci.formats.in.CellSensReader

DISPLAY_LIMITS - Static variable in class loci.formats.in.CellSensReader

DISPLAY_LUT - Static variable in class loci.formats.in.CellSensReader

DISPLAY_MAPPING_VOLUME - Static variable in class loci.formats.in.CellSensReader

DISPLAY_MODE_OPAQUE - Static variable in class loci.poi.hssf.record.TextRecord

DISPLAY_MODE_TRANSPARENT - Static variable in class loci.poi.hssf.record.TextRecord

DISPLAY_PROCESSOR_TYPE - Static variable in class loci.formats.in.CellSensReader

DISPLAY_STACK_ID - Static variable in class loci.formats.in.CellSensReader

DISPLAY_STACK_INDEX - Static variable in class loci.formats.in.CellSensReader

DISPLAY_VISIBLE - Static variable in class loci.formats.in.CellSensReader

displayAsPercentage - Variable in class loci.poi.hssf.record.AreaRecord

displayAsPercentage - Variable in class loci.poi.hssf.record.BarRecord

displayDataBrowser(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

displayDialog(GenericDialog) - Method in class loci.plugins.in.IdDialog

Asks user whether Bio-Formats should automatically check for upgrades, and if so, checks for an upgrade and prompts user to install it.

displayDialog(GenericDialog) - Method in class loci.plugins.in.ImporterDialog

Displays the dialog, or grabs values from macro options.

displayDialog(GenericDialog) - Method in class loci.plugins.in.SeriesDialog

displayDialog(GenericDialog) - Method in class loci.plugins.in.UpgradeDialog

Asks user whether Bio-Formats should automatically check for upgrades, and if so, checks for an upgrade and prompts user to install it.

DISPLAYED_LUT_ID - Static variable in class loci.formats.in.CellSensReader

displayFormulas - Variable in class loci.poi.hssf.record.WindowTwoRecord

displayGridlines - Variable in class loci.poi.hssf.record.WindowTwoRecord

displayGuts - Variable in class loci.poi.hssf.record.WindowTwoRecord

displayguts - Static variable in class loci.poi.hssf.record.WSBoolRecord

DisplayHandler - Class in loci.plugins.in

Logic for displaying images and metadata onscreen using ImageJ.

DisplayHandler(ImportProcess) - Constructor for class loci.plugins.in.DisplayHandler

displayImage(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

Displays the given image according to the configured options.

displayImage5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

displayImages(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler

Displays the given images according to the configured options.

displayName - Variable in class loci.formats.in.OperettaReader.OperettaHandler

displayNormal(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

Displays in a normal ImageJ window.

displayOMEXML() - Method in class loci.plugins.in.DisplayHandler

Displays OME-XML metadata in a tree in its own window.

displayOriginalMetadata() - Method in class loci.plugins.in.DisplayHandler

Displays standard metadata in a table in its own window.

displayROIs(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler

displayRowColHeadings - Variable in class loci.poi.hssf.record.WindowTwoRecord

displayTag - Variable in class loci.formats.in.BaseZeissReader.Shape

displayUsage() - Method in class loci.formats.tools.MakeTestOmeTiff

displayView5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

displayZeros - Variable in class loci.poi.hssf.record.WindowTwoRecord

disposalMethod - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

disposalMethodNames - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

dispose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

dispose() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

dispose() - Method in class loci.formats.gui.CacheComponent

dispose - Variable in class loci.formats.in.GIFReader

dispose() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics

dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

distance(int, int) - Method in class loci.formats.cache.CacheStrategy

Computes the distance from the given axis value to the axis center, taking into account the axis ordering scheme.

distbufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The buffer for distortion values (avoids reallocation for each code-block), for each thread.

DISTINCT_COLOR_COUNT - Static variable in class loci.poi.hssf.util.HSSFColor

dither - Variable in class loci.formats.in.SDTInfo

Divide() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a Divide

divide(Integer) - Method in class ome.units.unit.Unit

divide(Double) - Method in class ome.units.unit.Unit

DividePtg - Class in loci.poi.hssf.record.formula

This PTG implements the standard binomial divide "/"

DividePtg() - Constructor for class loci.poi.hssf.record.formula.DividePtg

Creates new AddPtg

DividePtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DividePtg

DIVIDER - Static variable in class loci.tests.testng.TestTools

dl - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The coded (compressed) data length.

DLL_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created using DLL function SPC_save_data_to_sdtfile (no setup, only data).

dls - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of decomposition levels specifications

dls - Variable in class jj2000.j2k.entropy.PrecinctSizeSpec

Reference to wavelet number of decomposition levels for each tile-component.

dls - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

The number of decomposition levels specification

DM - Static variable in class ome.units.UNITS

DM2_MAGIC_BYTES - Static variable in class loci.formats.in.GatanDM2Reader

DM3_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader

DM4_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader

DNGReader - Class in loci.formats.in

DNGReader is the file format reader for Canon DNG (TIFF) files.

DNGReader() - Constructor for class loci.formats.in.DNGReader

Constructs a new DNG reader.

DNL - Static variable in class loci.formats.codec.LosslessJPEGCodec

do_carry(int[]) - Static method in class mdbtools.libmdb.Money

DO_TIMING - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Whether to collect timing information or not: false.

DO_TIMING - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Whether to collect timing information or not: false.

DO_TIMING - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Whether to collect timing information or not: false.

doc - Variable in class loci.formats.gui.XMLWindow

doCaching - Variable in class loci.formats.tiff.TiffParser

doChannels - Variable in class loci.formats.in.CellWorxReader

doCodestreamManipulation() - Method in class jj2000.j2k.util.CodestreamManipulator

This method performs the actual manipulation of the codestream which is the reparsing for tile parts and packed packet headers

doCrop() - Method in class loci.plugins.in.ImporterOptions

document - Variable in class loci.poi.POITextExtractor

The POIDocument that's open

DOCUMENT_AUTHOR - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_COMPANY - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_BUILD_NUMBER - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_MAJOR_VERSION - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_MINOR_VERSION - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_NAME - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_PACKAGE - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_CREATOR_SUB_VERSION - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_KEYS - Static variable in class loci.formats.in.ICSReader

DOCUMENT_NAME - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_NAME - Static variable in class loci.formats.tiff.IFD

DOCUMENT_NOTE - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_PRODUCT - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_PRODUCT_NAME - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_PRODUCT_VERSION - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_SUMMARY_INFORMATION_ID - Static variable in class loci.poi.hpsf.wellknown.SectionIDMap

The DocumentSummaryInformation's first and second sections' format ID.

DOCUMENT_THUMB - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_TIME - Static variable in class loci.formats.in.CellSensReader

DOCUMENT_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants

DOCUMENT_TYPE_HINT - Static variable in class loci.formats.in.CellSensReader

DocumentBlock - Class in loci.poi.poifs.storage

A block of document data.

DocumentBlock(RawDataBlock, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

create a document block from a raw data block

DocumentBlock(RandomAccessInputStream, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

Create a single instance initialized with data.

DocumentBlock(int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

Create a single instance initialized with default values

DocumentDescriptor - Class in loci.poi.poifs.filesystem

Class DocumentDescriptor

DocumentDescriptor(POIFSDocumentPath, String) - Constructor for class loci.poi.poifs.filesystem.DocumentDescriptor

Trivial constructor

DocumentEntry - Interface in loci.poi.poifs.filesystem

This interface defines methods specific to Document objects managed by a Filesystem instance.

DocumentInputStream - Class in loci.poi.poifs.filesystem

This class provides methods to read a DocumentEntry managed by a Filesystem instance.

DocumentInputStream(DocumentEntry, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream

Create an InputStream from the specified DocumentEntry

DocumentInputStream(POIFSDocument, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream

Create an InputStream from the specified Document

documentName - Variable in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

documentName - Variable in class loci.poi.poifs.filesystem.POIFSWriterEvent

DocumentNode - Class in loci.poi.poifs.filesystem

Simple implementation of DocumentEntry

DocumentNode(DocumentProperty, DirectoryNode) - Constructor for class loci.poi.poifs.filesystem.DocumentNode

create a DocumentNode.

DocumentOutputStream - Class in loci.poi.poifs.filesystem

This class provides a wrapper over an OutputStream so that Document writers can't accidently go over their size limits

DocumentOutputStream(OutputStream, int) - Constructor for class loci.poi.poifs.filesystem.DocumentOutputStream

Create a DocumentOutputStream

DocumentProperty - Class in loci.poi.poifs.property

Trivial extension of Property for POIFSDocuments

DocumentProperty(String, int) - Constructor for class loci.poi.poifs.property.DocumentProperty

Constructor

DocumentProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DocumentProperty

reader constructor

DocumentSummaryInformation - Class in loci.poi.hpsf

Convenience class representing a DocumentSummary Information stream in a Microsoft Office document.

DocumentSummaryInformation(PropertySet) - Constructor for class loci.poi.hpsf.DocumentSummaryInformation

Creates a DocumentSummaryInformation from a given PropertySet.

documentSummaryInformationProperties - Static variable in class loci.poi.hpsf.wellknown.PropertyIDMap

Contains the summary information property ID values and associated strings.

documentUpdate() - Method in class loci.plugins.config.FlexWidgets

doer - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Flag to indicate if we should try to detect errors or just ignore any error resilient information

doesContainsSheetName(String, int) - Method in class loci.poi.hssf.model.Workbook

Determines whether a workbook contains the privided sheet name.

doFormatLayout(FormatEntry) - Method in class loci.plugins.config.ConfigWindow

doGet(Comparable, int) - Method in class loci.poi.util.BinaryTree

common get logic, used to get by key or get by value

doGetNext() - Method in class loci.poi.util.BinaryTree.BinaryTreeIterator

doInPlaceCaching - Variable in class loci.formats.Memoizer

If true, then all memo files will be created in the same directory as the original file.

domains - Variable in class loci.formats.FormatReader

List of domains in which this format is used.

doNotChangePattern - Variable in class loci.formats.FileStitcher

doNotifyAll - Variable in class jj2000.j2k.util.ThreadPool.ThreadPoolThread

doNotSizeWithWindow - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

doRecording - Variable in class loci.plugins.util.RecordedImageProcessor

doRedBlackDelete(BinaryTree.Node) - Method in class loci.poi.util.BinaryTree

complicated red-black delete stuff.

doRedBlackDeleteFixup(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree

complicated red-black delete stuff.

doRedBlackInsert(BinaryTree.Node, int) - Method in class loci.poi.util.BinaryTree

complicated red-black insert stuff.

doRemove(Comparable, int) - Method in class loci.poi.util.BinaryTree

common remove logic (remove by key or remove by value)

doStitchTiles() - Method in class loci.plugins.in.ImporterOptions

doT - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

DOT - Static variable in class loci.formats.ResourceNamer

DOT_RANGE - Static variable in class loci.formats.tiff.IFD

doTest() - Method in class loci.tests.testng.Configuration

DOTTED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DotTestListener - Class in loci.tests.testng

A TestNG listener that displays a "." for each passed test, an "F" for each failure and an "S" for each skip.

DotTestListener() - Constructor for class loci.tests.testng.DotTestListener

DOUBLE - Static variable in class loci.formats.FormatTools

Identifies the DOUBLE data type used to store pixel values.

DOUBLE - Static variable in class loci.formats.in.CellSensReader

DOUBLE - Static variable in class loci.formats.in.GatanReader

DOUBLE - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

DOUBLE_2 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_2_2 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_3 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_3_3 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_4 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_4_4 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_ARRAY_2 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_ARRAY_3 - Static variable in class loci.formats.in.CellSensReader

DOUBLE_INTERVAL - Static variable in class loci.formats.in.CellSensReader

DOUBLE_RECT - Static variable in class loci.formats.in.CellSensReader

DOUBLE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts

DoubleAnnotation - Class in ome.xml.model

DoubleAnnotation() - Constructor for class ome.xml.model.DoubleAnnotation

Default constructor.

DoubleAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.DoubleAnnotation

Constructs DoubleAnnotation recursively from an XML DOM tree.

DoubleAnnotation(DoubleAnnotation) - Constructor for class ome.xml.model.DoubleAnnotation

Copy constructor.

doubleAnnotations - Variable in class ome.xml.model.StructuredAnnotations

doubleCapacity() - Method in class loci.formats.codec.ByteVector

DoubleList - Class in loci.poi.util

A List of double's; as full an implementation of the java.util.List interface as possible, with an eye toward minimal creation of objects the mimicry of List is as follows: if possible, operations designated 'optional' in the List interface are attempted wherever the List interface refers to an Object, substitute double wherever the List interface refers to a Collection or List, substitute DoubleList the mimicry is not perfect, however: operations involving Iterators or ListIterators are not supported remove(Object) becomes removeValue to distinguish it from remove(int index) subList is not supported

DoubleList() - Constructor for class loci.poi.util.DoubleList

create an DoubleList of default size

DoubleList(DoubleList) - Constructor for class loci.poi.util.DoubleList

create a copy of an existing DoubleList

DoubleList(int) - Constructor for class loci.poi.util.DoubleList

create an DoubleList with a predefined initial size

DoubleList2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of doubles.

DoubleList2d() - Constructor for class loci.poi.util.DoubleList2d

DoubleOption - Class in loci.plugins.prefs

A double option for one of the plugins.

DoubleOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.DoubleOption

Constructs a double option with the parameters from the given map.

DoubleOption(String, boolean, String, String, double) - Constructor for class loci.plugins.prefs.DoubleOption

Constructs a double option with the given parameters.

doublesToBytes(double[], boolean) - Static method in class loci.common.DataTools

Translates an array of double values into an array of byte values.

doubleToBytes(double, boolean) - Static method in class loci.common.DataTools

Translates the double value into an array of eight bytes.

doubleValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a double.

doUpgradeCheck() - Method in class loci.plugins.in.ImporterOptions

download(URLConnection) - Static method in class loci.plugins.config.InstallWizard

download(URLConnection, File) - Static method in class loci.plugins.config.InstallWizard

doWrite(int) - Method in class loci.common.NIOFileHandle

doWriteData(OutputStream, byte[]) - Method in class loci.poi.poifs.storage.BigBlock

Default implementation of write for extending classes that contain their data in a simple array of bytes.

doZ - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler

DP80_FRAME_CENTERING - Static variable in class loci.formats.in.CellSensReader

DPA - Static variable in class ome.units.UNITS

DQT - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

DQT - Static variable in class loci.formats.codec.LosslessJPEGCodec

draft - Static variable in class loci.poi.hssf.record.PrintSetupRecord

draw(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

draw(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

draw3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawAreaHeight - Variable in class loci.poi.hssf.usermodel.HSSFPolygon

drawAreaWidth - Variable in class loci.poi.hssf.usermodel.HSSFPolygon

drawBytes(byte[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawChars(char[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawColour - Variable in class loci.formats.in.BaseZeissReader.Shape

drawDot(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

DrawingDump - Class in loci.poi.util

Dump out the aggregated escher records

DrawingDump() - Constructor for class loci.poi.util.DrawingDump

drawingGroupExists(short) - Method in class loci.poi.hssf.model.DrawingManager

drawingGroupExists(short) - Method in class loci.poi.hssf.model.DrawingManager2

drawingGroupId - Variable in class loci.poi.hssf.record.EscherAggregate

DrawingGroupRecord - Class in loci.poi.hssf.record

DrawingGroupRecord() - Constructor for class loci.poi.hssf.record.DrawingGroupRecord

DrawingGroupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingGroupRecord

drawingGroups - Variable in class loci.poi.hssf.model.DrawingManager2

DrawingManager - Class in loci.poi.hssf.model

Provides utilities to manage drawing groups.

DrawingManager(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager

drawingManager - Variable in class loci.poi.hssf.model.Workbook

drawingManager - Variable in class loci.poi.hssf.record.EscherAggregate

DrawingManager2 - Class in loci.poi.hssf.model

Provides utilities to manage drawing groups.

DrawingManager2(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager2

DrawingRecord - Class in loci.poi.hssf.record

DrawingRecord() - Constructor for class loci.poi.hssf.record.DrawingRecord

DrawingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecord

DrawingRecordForBiffViewer - Class in loci.poi.hssf.record

This is purely for the biff viewer.

DrawingRecordForBiffViewer() - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer

DrawingRecordForBiffViewer(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer

DrawingSelectionRecord - Class in loci.poi.hssf.record

DrawingSelectionRecord() - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord

DrawingSelectionRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord

drawLine(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor

drawPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRect(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(String) - Method in class loci.plugins.util.RecordedImageProcessor

drawString(String, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

drawStyle - Variable in class loci.formats.in.BaseZeissReader.Shape

drawTicks - Variable in class loci.poi.hssf.record.LineFormatRecord

DRI - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

DRI - Static variable in class loci.formats.codec.LosslessJPEGCodec

DRI - Static variable in class loci.formats.services.JPEGTurboServiceImpl

drivePictDecoder(int) - Method in class loci.formats.in.PictReader

Handles the opcodes in the PICT file.

dropDocument(POIFSReaderListener, DocumentDescriptor) - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

DS - Static variable in class loci.formats.in.DicomReader

DS - Static variable in class ome.units.UNITS

DSFRecord - Class in loci.poi.hssf.record

Title: Double Stream Flag Record

DSFRecord() - Constructor for class loci.poi.hssf.record.DSFRecord

DSFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DSFRecord

Constructs a DBCellRecord and sets its fields appropriately.

dsInf - Variable in class loci.poi.POIDocument

Holds further metadata on our document

dstData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

dstData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

dstData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

dstHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The height of the region of the destination image to be written.

dstHeight - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

dstIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

dstIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

dstMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The X coordinate of the upper left pixel to be written in the destination image.

dstMinX - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The Y coordinate of the upper left pixel to be written in the destination image.

dstMinY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The width of the region of the destination image to be written.

dstWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstXOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The horizontal destination offset used, along with sourceXOffset and subsampleX, to map between horizontal source and destination pixel coordinates.

dstXOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

dstYOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The vertical destination offset used, along with sourceYOffset and subsampleY, to map between horizontal source and destination pixel coordinates.

dstYOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

DT - Static variable in class loci.formats.in.DicomReader

dtype - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull

Current data type

DUMMY_PIXEL - Static variable in class loci.formats.out.EPSWriter

DummyGraphics2d - Class in loci.poi.hssf.usermodel

DummyGraphics2d() - Constructor for class loci.poi.hssf.usermodel.DummyGraphics2d

DummyMetadata - Class in loci.formats.meta

DummyMetadata() - Constructor for class loci.formats.meta.DummyMetadata

DummyMetadata - Class in ome.xml.meta

A dummy implementation for MetadataStore and MetadataRetrieve that is used when no other metadata implementations are available.

DummyMetadata() - Constructor for class ome.xml.meta.DummyMetadata

dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWCompressor

dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

dump(byte[], int, int, PrintStream) - Method in class loci.poi.ddf.EscherDump

Decodes the escher stream from a byte array and dumps the results to a print stream.

dump(int, byte[], PrintStream) - Method in class loci.poi.ddf.EscherDump

dump - Variable in class loci.poi.hssf.dev.BiffViewer

dump() - Method in class loci.poi.hssf.dev.BiffViewer.RecordDetails

dump(byte[], long, OutputStream, int, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to an OutputStream

dump(byte[], long, OutputStream, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to an OutputStream

dump(byte[], long, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to a String

dump(long) - Static method in class loci.poi.util.HexDump

dump(byte) - Static method in class loci.poi.util.HexDump

dump(InputStream, PrintStream, int, int) - Static method in class loci.poi.util.HexDump

Dumps bytesToDump bytes to an output stream.

dump() - Method in class mdbtools.dbengine.MemoryData

dumpBytes() - Method in class loci.poi.hssf.dev.BiffViewer.BiffviewRecordInputStream

dumpDrawingGroupRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Spits out a list of all the drawing records in the workbook.

dumpDrawingRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Aggregates the drawing records and dumps the escher record hierarchy to the standard output.

dumpNormal(Record, int, short, short) - Static method in class loci.poi.hssf.dev.BiffViewer

dumpOld(long, InputStream, PrintStream) - Method in class loci.poi.ddf.EscherDump

This version of dump is a translation from the open office escher dump routine.

dumpXML(String, Document, Element) - Static method in class loci.common.xml.XMLTools

Dumps the given OME-XML DOM tree to a string.

dumpXML(String, Document, Element, boolean) - Static method in class loci.common.xml.XMLTools

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in class ome.xml.meta.AbstractOMEXMLMetadata

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in interface ome.xml.meta.OMEXMLMetadata

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in class ome.xml.meta.OMEXMLMetadataImpl

duplicate(Class<? extends IFormatReader>) - Method in class loci.formats.ReaderWrapper

Performs a deep copy of the reader, including nested wrapped readers.

duplicate(Class<? extends IFormatWriter>) - Method in class loci.formats.WriterWrapper

Performs a deep copy of the writer, including nested wrapped writers.

duplicate() - Method in class loci.plugins.util.RecordedImageProcessor

duplicateRecurse(Class<? extends IFormatReader>) - Method in class loci.formats.ReaderWrapper

duplicateRecurse(Class<? extends IFormatWriter>) - Method in class loci.formats.WriterWrapper

DV - Static variable in class ome.units.UNITS

DV_MAGIC_BYTES_1 - Static variable in class loci.formats.in.DeltavisionReader

DV_MAGIC_BYTES_2 - Static variable in class loci.formats.in.DeltavisionReader

DW - Static variable in class ome.units.UNITS

DWORD - Static variable in class loci.formats.in.CellSensReader

dwt - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Reference to the DWT module

dx1 - Variable in class loci.poi.hssf.usermodel.HSSFAnchor

dx2 - Variable in class loci.poi.hssf.usermodel.HSSFAnchor

dy1 - Variable in class loci.poi.hssf.usermodel.HSSFAnchor

dy2 - Variable in class loci.poi.hssf.usermodel.HSSFAnchor

dyeName - Variable in class loci.formats.in.FV1000Reader.ChannelData

dyeName - Variable in class loci.formats.in.LeicaHandler.MultiBand

dyes - Variable in class loci.formats.in.ND2Handler

DYNAMIC_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

E

ealDE - Variable in class loci.formats.in.SDTInfo

EBCOTLayer - Class in jj2000.j2k.entropy.encoder

This class holds information about each layer that is to be, or has already been, allocated .

EBCOTLayer() - Constructor for class jj2000.j2k.entropy.encoder.EBCOTLayer

EBCOTRateAllocator - Class in jj2000.j2k.entropy.encoder

This implements the EBCOT post compression rate allocation algorithm.

EBCOTRateAllocator(CodedCBlkDataSrcEnc, LayersInfo, CodestreamWriter, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Initializes the EBCOT rate allocator of entropy coded data.

ECAT7_MAGIC - Static variable in class loci.formats.in.Ecat7Reader

Ecat7Reader - Class in loci.formats.in

Ecat7Reader is the file format reader for ECAT 7 files.

Ecat7Reader() - Constructor for class loci.formats.in.Ecat7Reader

Constructs a new ECAT7 reader.

ecopts - Variable in class jj2000.j2k.decoder.DecoderSpecs

The Entropy decoder options specifications

ecs - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

ECS_GRAY - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

ECS_sRGB - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

The enumerated color space defined in JP2 file format.

ECS_YCC - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

EditTiffG - Class in loci.formats.tools

Provides a GUI for editing TIFF file comments.

EditTiffG() - Constructor for class loci.formats.tools.EditTiffG

EFBiffViewer - Class in loci.poi.hssf.dev

EFBiffViewer() - Constructor for class loci.poi.hssf.dev.EFBiffViewer

Creates a new instance of EFBiffViewer

effectiveFieldCount - Variable in class loci.formats.in.FlexReader

EFI_HEIGHT_MAP - Static variable in class loci.formats.in.CellSensReader

EFI_SHARPNESS_MAP - Static variable in class loci.formats.in.CellSensReader

EFI_STACK - Static variable in class loci.formats.in.CellSensReader

EFI_TEXTURE_MAP - Static variable in class loci.formats.in.CellSensReader

ehs - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Reference to the stream where to read from

el(NodeList, int) - Method in class loci.formats.in.PrairieMetadata

Gets the indexth element from the given list of nodes.

ElectricPotential - Class in ome.units.quantity

A wrapper for the ElectricPotential class from the units implementation.

ElectricPotential(Number, Unit<ElectricPotential>) - Constructor for class ome.units.quantity.ElectricPotential

ELEMENT_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer

ELEMENT_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer

elementInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

elementLength - Variable in class loci.formats.in.DicomReader

elementName - Variable in class loci.formats.in.LeicaHandler

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Cache the element names for this box's xml definition

elementNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

Cache the element names for this box's xml definition

elements - Variable in class loci.formats.FilePatternBlock

Elements within this block, e.g.

elements - Variable in class loci.poi.util.IntMapper

ELLIPSE - Static variable in class loci.formats.in.FV1000Reader

ELLIPSE - Static variable in class loci.formats.in.ZeissLSMReader

Ellipse - Class in ome.xml.model

Ellipse() - Constructor for class ome.xml.model.Ellipse

Default constructor.

Ellipse(Element, OMEModel) - Constructor for class ome.xml.model.Ellipse

Constructs Ellipse recursively from an XML DOM tree.

Ellipse(Ellipse) - Constructor for class ome.xml.model.Ellipse

Copy constructor.

EM_DAC - Static variable in class loci.formats.in.FluoviewReader

EM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the electron microscopy domain.

EM_GAIN - Static variable in class loci.formats.in.CellSensReader

email - Variable in class ome.xml.model.Experimenter

embedded_stream - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

EMBEDDED_STREAM - Static variable in class loci.formats.in.VolocityReader

embeddedImages - Variable in class loci.formats.in.TillVisionReader

EmbeddedObjectRefSubRecord - Class in loci.poi.hssf.record

A sub-record within the OBJ record which stores a reference to an object stored in a separate entry within the OLE2 compound file.

EmbeddedObjectRefSubRecord() - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

EmbeddedObjectRefSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Constructs an EmbeddedObjectRef record and sets its fields appropriately.

embeddedOffset - Variable in class loci.formats.in.TillVisionReader

emission - Variable in class loci.formats.in.FlexReader.FilterGroup

emission - Variable in class loci.formats.in.ZeissCZIReader.Channel

EMISSION_WAVELENGTH - Static variable in class loci.tests.testng.Configuration

emissionFilter - Variable in class loci.formats.in.FV1000Reader.ChannelData

emissionFilterLinks - Variable in class ome.xml.model.FilterSet

emissionFilterLinks - Variable in class ome.xml.model.LightPath

EmissionFilterRef - Class in ome.xml.model

EmissionFilterRef() - Constructor for class ome.xml.model.EmissionFilterRef

Default constructor.

EmissionFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.EmissionFilterRef

Constructs EmissionFilterRef recursively from an XML DOM tree.

EmissionFilterRef(EmissionFilterRef) - Constructor for class ome.xml.model.EmissionFilterRef

Copy constructor.

emissionWavelength - Variable in class loci.formats.in.SVSReader

emissionWavelength - Variable in class ome.xml.model.Channel

Emit(String) - Method in class loci.poi.hssf.model.FormulaParser

Output a String with Tab

EmitLn(String) - Method in class loci.poi.hssf.model.FormulaParser

Output a String with Tab and CRLF

EMPTY_INTERPOLATED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

EMPTY_NOT_PLOTTED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

EMPTY_STRING - Static variable in class loci.formats.in.IM3Reader

EMPTY_STRING - Static variable in class loci.poi.hssf.record.SSTRecord

EMPTY_ZERO - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord

emptyComplexPart - Variable in class loci.poi.ddf.EscherArrayProperty

When reading a property from data stream remeber if the complex part is empty and set this flag.

EmptyImage - Class in com.sun.media.imageioimpl.plugins.tiff

EmptyImage(int, int, int, int, int, int, int, int, SampleModel, ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.EmptyImage

emWave - Variable in class loci.formats.in.BDReader

emWave - Variable in class loci.formats.in.FV1000Reader.ChannelData

emWave - Variable in class loci.formats.in.ImarisHDFReader

emWave - Variable in class loci.formats.in.ND2Handler

emWave - Variable in class loci.formats.in.NikonTiffReader

emWavelen - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Emission filter wavelength.

emWavelength - Variable in class loci.formats.in.BaseZeissReader

emWavelength - Variable in class loci.formats.in.MetamorphReader

The TIFF's emWavelength

emWavelength - Variable in class loci.formats.in.OperettaReader.Plane

emWaves - Variable in class loci.formats.in.InCellReader

emWaves - Variable in class loci.formats.in.LeicaReader

enableCT - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

enabledBox - Variable in class loci.plugins.config.ConfigWindow

enableIJLogging(boolean) - Static method in class loci.common.DebugTools

Enable SLF4J logging using logback, in the context of ImageJ.

enableIJLogging(boolean, Appender<ILoggingEvent>) - Static method in class loci.common.LogbackTools

enableLogging(String) - Static method in class loci.common.DebugTools

Attempts to enable SLF4J logging via logback or log4j without an external configuration file.

enableLogging(String) - Static method in class loci.common.Log4jTools

Attempts to enable SLF4J logging via log4j without an external configuration file.

enableLogging(String) - Static method in class loci.common.LogbackTools

Attempts to enable SLF4J logging via logback without an external configuration file.

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Encodes the supplied image data, writing to the currently set ImageOutputStream.

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsCompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor

encode(int, int, int, BitOutputBuffer) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Encodes information for the specified element of the tree, given the threshold and sends it to the 'out' stream.

encode1D(byte[], int, int, int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

One-dimensionally encode a row of data using CCITT Huffman compression.

encodeMainHeader() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Write main header.

encodePacket(int, int, int, int, CBlkRateDistStats[][], int[][], BitOutputBuffer, byte[], int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Encodes a packet and returns the buffer containing the encoded packet header.

encodeRLE(byte[], int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor

Encode a row of data using Modified Huffman Compression also known as CCITT RLE (Run Lenth Encoding).

encodeRLE4(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

encodeRLE8(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

encoderVersion - Variable in class ome.jxr.parser.FileParser

encodeT4(boolean, boolean, byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

Encode a buffer of data using CCITT T.4 Compression also known as Group 3 facsimile compression.

encodeT6(byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor

Encode a buffer of data using CCITT T.6 Compression also known as Group 4 facsimile compression.

encodeTilePartHeader(int, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes tile-part header.

encodeYUV(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Encode the uncompressed source image associated with this compressor instance and output a YUV planar image to the given destination buffer.

encodeYUV(int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Encode the uncompressed source image associated with this compressor instance and return a buffer containing a YUV planar image.

encodeYUV(BufferedImage, byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Encode the uncompressed source image stored in srcImage and output a YUV planar image to the given destination buffer.

encodeYUV(BufferedImage, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Encode the uncompressed source image stored in srcImage and return a buffer containing a YUV planar image.

encodeYUV(byte[], int, int, int, int, byte[], int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

encodeYUV(int[], int, int, int, int, byte[], int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor

ENCODING - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants

encoding - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

ENCODING - Static variable in class loci.common.Constants

encoding - Variable in class loci.common.RandomAccessInputStream

ENCODING - Static variable in class loci.formats.in.LIFReader

The encoding used in this file.

encoding - Variable in class loci.formats.in.NRRDReader

Data encoding.

encoding - Variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING - Static variable in class loci.poi.util.StringUtil

ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

POI will now properly handle unicode strings without forceing an encoding

ENCODING_UNCHANGED - Static variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFCell

ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

POI will now properly handle unicode strings without forceing an encoding

encodingRate - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The bitrate in bits-per-pixel for encoding.

encodingRate - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

The bitrate in bits-per-pixel for encoding.

end - Variable in class loci.formats.FilePatternBlock

END - Static variable in class loci.formats.in.GIFReader

end - Variable in class loci.formats.Modulo

END_OF_CHAIN - Static variable in interface loci.poi.poifs.common.POIFSConstants

endBlock() - Method in class loci.common.CBZip2InputStream

endDocument() - Method in class loci.formats.in.ND2Handler

endDocument() - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler

endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the end double underline

endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the end double underline

endElement(String, String, String) - Method in class loci.formats.in.BioRadSCNReader.SCNHandler

endElement(String, String, String) - Method in class loci.formats.in.FEITiffReader.FEIHandler

endElement(String, String, String) - Method in class loci.formats.in.FlexReader.FlexHandler

endElement(String, String, String) - Method in class loci.formats.in.InCellReader.InCellHandler

endElement(String, String, String) - Method in class loci.formats.in.InCellReader.MinimalInCellHandler

endElement(String, String, String) - Method in class loci.formats.in.IvisionReader.IvisionHandler

endElement(String, String, String) - Method in class loci.formats.in.LeicaHandler

endElement(String, String, String) - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler

endElement(String, String, String, Attributes) - Method in class loci.formats.in.ND2Handler

endElement(String, String, String) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler

endElement(String, String, String) - Method in class loci.formats.in.OperettaReader.OperettaHandler

endElement(String, String, String) - Method in class loci.formats.in.ScanrReader.ScanrHandler

endElement(String, String, String) - Method in class loci.formats.in.ZeissTIFFHandler

endElement(String, String, String) - Method in class loci.formats.out.OMEXMLWriter.OMEHandler

ENDIANNESS_OFFSET - Static variable in class loci.formats.in.MRCReader

EndianType - Interface in jj2000.j2k.io

This interface defines constants for the two types of byte ordering: little- and big-endian.

endIndex - Variable in class loci.formats.FilePattern

Indices into the pattern indicating the end of a numerical block.

endInsertEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

endOfInfo_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor

reserved end of data code based on code size

endPointer - Variable in class loci.formats.in.LIFReader

endPos - Variable in class loci.formats.out.AVIWriter

EndRecord - Class in loci.poi.hssf.record

The end record defines the end of a block of records for a (Graphing) data object.

EndRecord() - Constructor for class loci.poi.hssf.record.EndRecord

EndRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndRecord

Constructs a EndRecord record and sets its fields appropriately.

endReplacePixels() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

EndSubRecord - Class in loci.poi.hssf.record

The end data record is used to denote the end of the subrecords.

EndSubRecord() - Constructor for class loci.poi.hssf.record.EndSubRecord

EndSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndSubRecord

Constructs a End record and sets its fields appropriately.

endTime - Variable in class loci.formats.in.SDTInfo

Macro time of the last photon.

endTime - Variable in class ome.xml.model.PlateAcquisition

endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the end underline

endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the end underline

endWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

energyConvFactor - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Energy conversion factor.

Engine - Class in mdbtools.dbengine

Engine is the entry point into a java based database backend The datastore for the data is un-important since the engine communiates with the data via a set of defined interfaces.

Engine() - Constructor for class mdbtools.dbengine.Engine

ENHANCED_DYNAMIC_RANGE - Static variable in class loci.formats.in.CellSensReader

enJJ2KMarkSeg - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Whether or not to write the JJ2000 COM marker segment

ensureCapacity(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

ensureCapacity(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil

ensureNonExisting(String) - Method in class loci.formats.tools.MakeTestOmeTiff

ensureSection2() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Creates section 2 if it is not already present.

entdec - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

entensions - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

entensions - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

entries - Variable in class loci.formats.in.ZeissCZIReader.AttachmentDirectory

entries - Variable in class loci.formats.in.ZeissCZIReader.Directory

entries - Variable in class ome.jxr.ifd.IFDMetadata

ENTRIES_COUNT_SIZE - Static variable in class ome.jxr.constants.IFD

entriesPerBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock

entriesPerXBATBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock

EntropyCoder - Class in jj2000.j2k.entropy.encoder

This abstract class provides the general interface for block-based entropy encoders.

EntropyCoder(CBlkQuantDataSrcEnc) - Constructor for class jj2000.j2k.entropy.encoder.EntropyCoder

Initializes the source of quantized wavelet coefficients.

EntropyDecoder - Class in jj2000.j2k.entropy.decoder

This is the abstract class from which all entropy decoders must inherit.

EntropyDecoder(CodedCBlkDataSrcDec) - Constructor for class jj2000.j2k.entropy.decoder.EntropyDecoder

Initializes the source of compressed data.

Entry - Interface in loci.poi.poifs.filesystem

This interface provides access to an object managed by a Filesystem instance.

entry - Variable in class mdbtools.libmdb.MdbTableDef

ENTRY_SIZE - Static variable in class ome.jxr.constants.IFD

ENTRY_TAG_SIZE - Static variable in class ome.jxr.constants.IFD

ENTRY_TYPE_COUNT_SIZE - Static variable in class ome.jxr.constants.IFD

ENTRY_TYPE_SIZE - Static variable in class ome.jxr.constants.IFD

ENTRY_VALUE_SIZE - Static variable in class ome.jxr.constants.IFD

entryCount - Variable in class loci.common.ZipHandle

entryName - Variable in class loci.common.ZipHandle

entryName - Variable in class loci.formats.in.ZipReader

EntryNode - Class in loci.poi.poifs.filesystem

Abstract implementation of Entry Extending classes should override isDocument() or isDirectory(), as appropriate Extending classes must override isDeleteOK()

EntryNode(Property, DirectoryNode) - Constructor for class loci.poi.poifs.filesystem.EntryNode

create a DocumentNode.

entryOffsets - Variable in class ome.jxr.ifd.IFDContainer

entrySet() - Method in class loci.poi.util.BinaryTree

Returns a set view of the mappings contained in this map.

entrySetByValue() - Method in class loci.poi.util.BinaryTree

Returns a set view of the mappings contained in this map.

entryToString(Object, String) - Static method in class loci.formats.tools.AmiraParameters

entryType - Variable in enum ome.jxr.ifd.IFDEntry

Enumeration - Interface in ome.xml.model.enums

Abstract superclass for all enumerations.

EnumerationException - Exception in ome.xml.model.enums

EnumerationException is the exception thrown when an enumeration is invalid or not found.

EnumerationException() - Constructor for exception ome.xml.model.enums.EnumerationException

EnumerationException(String) - Constructor for exception ome.xml.model.enums.EnumerationException

EnumerationException(String, Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException

EnumerationException(Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException

enumerations - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo

EnumException - Exception in loci.common.enumeration

EnumException() - Constructor for exception loci.common.enumeration.EnumException

EnumException(String) - Constructor for exception loci.common.enumeration.EnumException

EnumException(String, Throwable) - Constructor for exception loci.common.enumeration.EnumException

EnumException(Throwable) - Constructor for exception loci.common.enumeration.EnumException

ENV_SUFFIX - Static variable in class loci.formats.in.PrairieReader

ENVELOPE_10_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

ENVELOPE_CS_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

ENVELOPE_DL_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

ENVELOPE_MONARCH_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

envFile - Variable in class loci.formats.in.PrairieReader

The associated XML files.

EOC - Static variable in interface jj2000.j2k.codestream.Markers

End of codestream (EOC): 0xFFD9

EOD - Static variable in class loci.poi.poifs.filesystem.DocumentInputStream

EOF - Static variable in class loci.common.CBZip2InputStream

eof() - Method in class loci.poi.poifs.storage.RawDataBlock

When we read the data, did we hit end of file?

EOF_ERROR_MSG - Static variable in class loci.common.AbstractNIOHandle

Error message to be used when instantiating an EOFException.

eofByte - Variable in class loci.formats.codec.BitBuffer

Deprecated.

eofFlag - Variable in class loci.formats.codec.BitBuffer

Deprecated.

eofLoc - Variable in class loci.poi.hssf.model.Sheet

EOFRecord - Class in loci.poi.hssf.record

End Of File record.

EOFRecord() - Constructor for class loci.poi.hssf.record.EOFRecord

EOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EOFRecord

Constructs a EOFRecord record and sets its fields appropriately.

EOI - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

EOI - Static variable in class loci.formats.codec.LosslessJPEGCodec

EOI - Static variable in class loci.formats.services.JPEGTurboServiceImpl

EOI_CODE - Static variable in class loci.formats.codec.LZWCodec

EOL - Static variable in class loci.poi.util.HexDump

EPH - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies whether end of packet header (EPH) markers should be used.

EPH - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies whether end of packet header (EPH) markers should be used.

EPH - Static variable in interface jj2000.j2k.codestream.Markers

End of packet header (EPH): 0xFF92

EPH_LENGTH - Static variable in interface jj2000.j2k.codestream.Markers

Length of EPH marker (in bytes)

ephMarker - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Array used to store the EPH markers values

ephs - Variable in class jj2000.j2k.decoder.DecoderSpecs

The End of Packet Headers (EPH) markers specifications

ephUsed - Variable in class jj2000.j2k.codestream.reader.PktDecoder

Whether or not EPH marker are used

EPOCH_DIFF - Static variable in class loci.poi.hpsf.Util

The difference between the Windows epoch (1601-01-01 00:00:00) and the Unix epoch (1970-01-01 00:00:00) in milliseconds: 11644473600000L.

EPSILON - Static variable in class loci.common.Constants

EPSReader - Class in loci.formats.in

Reader is the file format reader for Encapsulated PostScript (EPS) files.

EPSReader() - Constructor for class loci.formats.in.EPSReader

Constructs a new EPS reader.

EPSWriter - Class in loci.formats.out

EPSWriter is the file format writer for Encapsulated PostScript (EPS) files.

EPSWriter() - Constructor for class loci.formats.out.EPSWriter

epxDiv - Variable in class loci.formats.in.SDTInfo

equal(Length, Length) - Static method in class loci.formats.in.PrairieReader

Determines whether the two Length values are equal.

equal(byte[], byte[]) - Static method in class loci.poi.hpsf.Util

Checks whether two byte arrays a and b are equal.

Equal() - Method in class loci.poi.hssf.model.FormulaParser

Recognize and Translate a test for Equality

EqualPtg - Class in loci.poi.hssf.record.formula

EqualPtg() - Constructor for class loci.poi.hssf.record.formula.EqualPtg

Creates new AddPtg

EqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.EqualPtg

equalReaders(IFormatReader, IFormatReader) - Static method in class loci.formats.FormatTools

Check if the two given readers are equal.

equals(Object) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

equals(Object) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

equals(int[], int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Tests if the 'obj' object is the same filter as this one.

equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Tests if the 'obj' object is the same filter as this one.

equals(Object) - Method in class loci.common.Location

equals(Object) - Method in class loci.common.Region

equals(Object) - Method in class loci.formats.in.CellSensReader.TileCoordinate

equals(Object) - Method in class loci.formats.in.MetamorphTiffReader.Well

equals(Object) - Method in class loci.formats.in.ZeissCZIReader.Coordinate

equals(Node, Node) - Method in class loci.formats.services.OMEXMLServiceImpl

Compares two Elements for equality.

equals(Object) - Method in class loci.formats.tiff.TiffRational

Indicates whether some other object is "equal to" this one.

equals(Object) - Method in class loci.formats.TileStitcher.TileCoordinate

equals(Object) - Method in class loci.plugins.config.FormatEntry

equals(Object) - Method in class loci.plugins.prefs.OptionsList

equals(Object) - Method in class loci.poi.ddf.EscherComplexProperty

Determine whether this property is equal to another property.

equals(Object) - Method in class loci.poi.ddf.EscherSimpleProperty

Returns true if one escher property is equal to another.

equals(Object) - Method in class loci.poi.hpsf.ClassID

Checks whether this ClassID is equal to another object.

equals(Object) - Method in class loci.poi.hpsf.Property

Compares two properties.

equals(Object) - Method in class loci.poi.hpsf.PropertySet

Returns true if the PropertySet is equal to the specified parameter, else false.

equals(Object) - Method in class loci.poi.hpsf.Section

Checks whether this section is equal to another object.

equals(Object) - Method in class loci.poi.hpsf.SpecialPropertySet

equals(Collection, Collection) - Static method in class loci.poi.hpsf.Util

Checks whether two collections are equal.

equals(Object[], Object[]) - Static method in class loci.poi.hpsf.Util

Compares to object arrays with regarding the objects' order.

equals(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

equals(Object) - Method in class loci.poi.hssf.record.BlankRecord

equals(Object) - Method in class loci.poi.hssf.record.BoolErrRecord

equals(Object) - Method in class loci.poi.hssf.record.formula.Area3DPtg

equals(Object) - Method in class loci.poi.hssf.record.FormulaRecord

equals(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord

equals(Object) - Method in class loci.poi.hssf.record.NumberRecord

equals(Object) - Method in class loci.poi.hssf.record.RowRecord

equals(Object) - Method in class loci.poi.hssf.record.SSTRecord

equals(Object) - Method in class loci.poi.hssf.record.UnicodeString

Our handling of equals is inconsistent with compareTo.

equals(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow

equals(Region) - Method in class loci.poi.hssf.util.Region

equals(Object) - Method in class loci.poi.poifs.filesystem.DocumentDescriptor

equality.

equals(Object) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

equality.

equals(Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

Object equality, implemented as object identity

equals(Object) - Method in class loci.poi.util.BinaryTree.Node

Compares the specified object with this entry for equality.

equals(Object) - Method in class loci.poi.util.DoubleList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.poi.util.IntList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.poi.util.ShortList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.tests.testng.Configuration

equals(ConversionTest.Plane) - Method in class loci.tests.testng.ConversionTest.Plane

equals(Object) - Method in class mdbtools.dbengine.sql.Condition

EQUALS - Static variable in class mdbtools.dbengine.sql.Equation

equals(Object) - Method in class mdbtools.dbengine.sql.Equation

equals(Object) - Method in class mdbtools.dbengine.sql.FQColumn

equals(Object) - Method in class mdbtools.dbengine.sql.Join

equals(Object[], Object[]) - Method in class mdbtools.dbengine.tasks.AggregateQuery

equals(Object) - Method in class ome.units.quantity.Angle

equals(Object) - Method in class ome.units.quantity.ElectricPotential

equals(Object) - Method in class ome.units.quantity.Frequency

equals(Object) - Method in class ome.units.quantity.Length

equals(Object) - Method in class ome.units.quantity.Power

equals(Object) - Method in class ome.units.quantity.Pressure

equals(Object) - Method in class ome.units.quantity.Temperature

equals(Object) - Method in class ome.units.quantity.Time

equals(Object) - Method in class ome.xml.model.MapPair

equals(Object) - Method in class ome.xml.model.primitives.PrimitiveType

equals(TJScalingFactor) - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor

Returns true or false, depending on whether this instance and other have the same numerator and denominator.

equalsContents(Object) - Method in class loci.poi.hpsf.CustomProperty

Compares two custom properties for equality.

equalStrips - Variable in class loci.formats.in.MinimalTiffReader

equalStrips - Variable in class loci.formats.tiff.TiffParser

Equation - Class in mdbtools.dbengine.sql

Equation() - Constructor for class mdbtools.dbengine.sql.Equation

equation - Variable in class mdbtools.dbengine.sql.Join

ERFListener - Interface in loci.poi.hssf.eventmodel

An ERFListener is registered with the EventRecordFactory.

erode() - Method in class loci.plugins.util.RecordedImageProcessor

err - Variable in class jj2000.j2k.util.StreamMsgLogger

The 'err' stream

ERROR - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

error(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler

error(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler

error(TransformerException) - Method in class loci.common.xml.XMLTools.XMLListener

Error(String) - Method in class loci.poi.hssf.model.FormulaParser

Report an Error

ERROR - Static variable in class loci.poi.util.POILogger

ERROR_DIV_0 - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NA - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NAME - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NULL - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_NUM - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_REF - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

ERROR_VALUE - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants

errors - Variable in class loci.common.xml.ValidationErrorHandler

ErrPtg - Class in loci.poi.hssf.record.formula

ErrPtg() - Constructor for class loci.poi.hssf.record.formula.ErrPtg

Creates new ErrPtg

ErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ErrPtg

ers - Variable in class jj2000.j2k.decoder.DecoderSpecs

The error resilience specifications concerning the entropy decoder

ERS_SEG_SYMBOLS - Static variable in interface jj2000.j2k.codestream.Markers

The "segmentation symbols used" flag within Sers: 2

ERS_SOP - Static variable in interface jj2000.j2k.codestream.Markers

The "SOP marker segments used" flag within Sers: 1

escapeXML(String) - Static method in class loci.common.xml.XMLTools

Escape special characters.

EscherAggregate - Class in loci.poi.hssf.record

This class is used to aggregate the MSODRAWING and OBJ record combinations.

EscherAggregate(DrawingManager2) - Constructor for class loci.poi.hssf.record.EscherAggregate

EscherArrayProperty - Class in loci.poi.ddf

Escher array properties are the most wierd construction ever invented with all sorts of special cases.

EscherArrayProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty

EscherArrayProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty

EscherBitmapBlip - Class in loci.poi.ddf

EscherBitmapBlip() - Constructor for class loci.poi.ddf.EscherBitmapBlip

EscherBlipRecord - Class in loci.poi.ddf

EscherBlipRecord() - Constructor for class loci.poi.ddf.EscherBlipRecord

EscherBlipWMFRecord - Class in loci.poi.ddf

The blip record is used to hold details about large binary objects that occur in escher such as JPEG, GIF, PICT and WMF files.

EscherBlipWMFRecord() - Constructor for class loci.poi.ddf.EscherBlipWMFRecord

EscherBoolProperty - Class in loci.poi.ddf

Represents a boolean property.

EscherBoolProperty(short, int) - Constructor for class loci.poi.ddf.EscherBoolProperty

Create an instance of an escher boolean property.

EscherBSERecord - Class in loci.poi.ddf

The BSE record is related closely to the EscherBlipRecord and stores extra information about the blip.

EscherBSERecord() - Constructor for class loci.poi.ddf.EscherBSERecord

escherBSERecords - Variable in class loci.poi.hssf.model.Workbook

EscherChildAnchorRecord - Class in loci.poi.ddf

The escher child achor record is used to specify the position of a shape under an existing group.

EscherChildAnchorRecord() - Constructor for class loci.poi.ddf.EscherChildAnchorRecord

EscherClientAnchorRecord - Class in loci.poi.ddf

The escher client anchor specifies which rows and cells the shape is bound to as well as the offsets within those cells.

EscherClientAnchorRecord() - Constructor for class loci.poi.ddf.EscherClientAnchorRecord

EscherClientDataRecord - Class in loci.poi.ddf

The EscherClientDataRecord is used to store client specific data about the position of a shape within a container.

EscherClientDataRecord() - Constructor for class loci.poi.ddf.EscherClientDataRecord

EscherComplexProperty - Class in loci.poi.ddf

A complex property differs from a simple property in that the data can not fit inside a 32 bit integer.

EscherComplexProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty

Create a complex property using the property id and a byte array containing the complex data value.

EscherComplexProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty

Create a complex property using the property number, a flag to indicate whether this is a blip reference and the complex property data.

EscherContainerRecord - Class in loci.poi.ddf

Escher container records store other escher records as children.

EscherContainerRecord() - Constructor for class loci.poi.ddf.EscherContainerRecord

EscherDggRecord - Class in loci.poi.ddf

This record defines the drawing groups used for a particular sheet.

EscherDggRecord() - Constructor for class loci.poi.ddf.EscherDggRecord

EscherDggRecord.FileIdCluster - Class in loci.poi.ddf

EscherDggRecord.FileIdCluster(int, int) - Constructor for class loci.poi.ddf.EscherDggRecord.FileIdCluster

EscherDgRecord - Class in loci.poi.ddf

This record simply holds the number of shapes in the drawing group and the last shape id used for this drawing group.

EscherDgRecord() - Constructor for class loci.poi.ddf.EscherDgRecord

EscherDump - Class in loci.poi.ddf

Used to dump the contents of escher records to a PrintStream.

EscherDump() - Constructor for class loci.poi.ddf.EscherDump

EscherGraphics - Class in loci.poi.hssf.usermodel

Translates Graphics calls into escher calls.

EscherGraphics(HSSFShapeGroup, HSSFWorkbook, Color, float) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics

Construct an escher graphics object.

EscherGraphics(HSSFShapeGroup, HSSFWorkbook, Color, Font, float) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics

Constructs an escher graphics object.

escherGraphics - Variable in class loci.poi.hssf.usermodel.EscherGraphics2d

EscherGraphics2d - Class in loci.poi.hssf.usermodel

Translates Graphics2d calls into escher calls.

EscherGraphics2d(EscherGraphics) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics2d

Constructs one escher graphics object from an escher graphics object.

escherGroup - Variable in class loci.poi.hssf.usermodel.EscherGraphics

EscherMetafileBlip - Class in loci.poi.ddf

EscherMetafileBlip() - Constructor for class loci.poi.ddf.EscherMetafileBlip

EscherOptRecord - Class in loci.poi.ddf

The opt record is used to store property values for a shape.

EscherOptRecord() - Constructor for class loci.poi.ddf.EscherOptRecord

EscherPictBlip - Class in loci.poi.ddf

EscherPictBlip() - Constructor for class loci.poi.ddf.EscherPictBlip

EscherProperties - Class in loci.poi.ddf

Provides a list of all known escher properties including the description and type.

EscherProperties() - Constructor for class loci.poi.ddf.EscherProperties

EscherProperty - Class in loci.poi.ddf

This is the abstract base class for all escher properties.

EscherProperty(short) - Constructor for class loci.poi.ddf.EscherProperty

The id is distinct from the actual property number.

EscherProperty(short, boolean, boolean) - Constructor for class loci.poi.ddf.EscherProperty

Constructs a new escher property.

EscherPropertyFactory - Class in loci.poi.ddf

Generates a property given a reference into the byte array storing that property.

EscherPropertyFactory() - Constructor for class loci.poi.ddf.EscherPropertyFactory

EscherPropertyMetaData - Class in loci.poi.ddf

This class stores the type and description of an escher property.

EscherPropertyMetaData(String) - Constructor for class loci.poi.ddf.EscherPropertyMetaData

EscherPropertyMetaData(String, byte) - Constructor for class loci.poi.ddf.EscherPropertyMetaData

EscherRecord - Class in loci.poi.ddf

The base abstract record from which all escher records are defined.

EscherRecord() - Constructor for class loci.poi.ddf.EscherRecord

Create a new instance

EscherRecord.EscherRecordHeader - Class in loci.poi.ddf

This class reads the standard escher header.

EscherRecord.EscherRecordHeader() - Constructor for class loci.poi.ddf.EscherRecord.EscherRecordHeader

escherRecordClasses - Static variable in class loci.poi.ddf.DefaultEscherRecordFactory

EscherRecordFactory - Interface in loci.poi.ddf

The escher record factory interface allows for the creation of escher records from a pointer into a data array.

escherRecords - Variable in class loci.poi.hssf.record.AbstractEscherHolderRecord

EscherRGBProperty - Class in loci.poi.ddf

A color property.

EscherRGBProperty(short, int) - Constructor for class loci.poi.ddf.EscherRGBProperty

EscherSerializationListener - Interface in loci.poi.ddf

Interface for listening to escher serialization events.

EscherShapePathProperty - Class in loci.poi.ddf

Defines the constants for the various possible shape paths.

EscherShapePathProperty(short, int) - Constructor for class loci.poi.ddf.EscherShapePathProperty

EscherSimpleProperty - Class in loci.poi.ddf

A simple property is of fixed length and as a property number in addition to a 32-bit value.

EscherSimpleProperty(short, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty

The id is distinct from the actual property number.

EscherSimpleProperty(short, boolean, boolean, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty

Constructs a new escher property.

EscherSpgrRecord - Class in loci.poi.ddf

The spgr record defines information about a shape group.

EscherSpgrRecord() - Constructor for class loci.poi.ddf.EscherSpgrRecord

EscherSplitMenuColorsRecord - Class in loci.poi.ddf

A list of the most recently used colours for the drawings contained in this document.

EscherSplitMenuColorsRecord() - Constructor for class loci.poi.ddf.EscherSplitMenuColorsRecord

EscherSpRecord - Class in loci.poi.ddf

Together the the EscherOptRecord this record defines some of the basic properties of a shape.

EscherSpRecord() - Constructor for class loci.poi.ddf.EscherSpRecord

escherTextbox - Variable in class loci.poi.hssf.model.TextboxShape

EscherTextboxRecord - Class in loci.poi.ddf

Holds data from the parent application.

EscherTextboxRecord() - Constructor for class loci.poi.ddf.EscherTextboxRecord

estimateLayerThreshold(int, EBCOTLayer) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

This function attempts to estimate a rate-distortion slope threshold which will achieve a target number of code bytes close the `targetBytes' value.

evalFile(String) - Method in class loci.formats.in.ZeissTIFFReader

Evaluate the metadata of a TIFF/XML file collection, and return this to the user.

EventRecordFactory - Class in loci.poi.hssf.eventmodel

Event-based record factory.

EventRecordFactory() - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory

Construct an abortable EventRecordFactory.

EventRecordFactory(boolean) - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory

Create an EventRecordFactory

EXA(Unit<T>) - Static method in class ome.units.UNITS

EXAHZ - Static variable in class ome.units.UNITS

EXAM - Static variable in class ome.units.UNITS

EXAPA - Static variable in class ome.units.UNITS

EXAS - Static variable in class ome.units.UNITS

EXAV - Static variable in class ome.units.UNITS

EXAW - Static variable in class ome.units.UNITS

ExcelExtractor - Class in loci.poi.hssf.extractor

A text extractor for Excel files.

ExcelExtractor(HSSFWorkbook) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor

ExcelExtractor(POIFSFileSystem) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor

excitation - Variable in class loci.formats.in.FlexReader.FilterGroup

excitation - Variable in class loci.formats.in.ZeissCZIReader.Channel

EXCITATION_WAVELENGTH - Static variable in class loci.tests.testng.Configuration

excitationFilter - Variable in class loci.formats.in.FV1000Reader.ChannelData

excitationFilterLinks - Variable in class ome.xml.model.FilterSet

excitationFilterLinks - Variable in class ome.xml.model.LightPath

ExcitationFilterRef - Class in ome.xml.model

ExcitationFilterRef() - Constructor for class ome.xml.model.ExcitationFilterRef

Default constructor.

ExcitationFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExcitationFilterRef

Constructs ExcitationFilterRef recursively from an XML DOM tree.

ExcitationFilterRef(ExcitationFilterRef) - Constructor for class ome.xml.model.ExcitationFilterRef

Copy constructor.

excitationWavelength - Variable in class loci.formats.in.SVSReader

excitationWavelength - Variable in class ome.xml.model.Channel

exclude - Variable in class loci.formats.in.InCellReader

exec(String) - Method in class loci.common.ReflectedUniverse

Deprecated.

Executes a command in the universe.

execute() - Method in class loci.plugins.in.ImportProcess

Performs the import preparation process, notifying status listeners at each step.

execute(SQL) - Method in class mdbtools.dbengine.Engine

execute is used to tell the engine to do something

execute(Select) - Method in class mdbtools.dbengine.Engine

Execute a sql select query

execute(Object) - Method in interface mdbtools.dbengine.functions.Aggregate

execute(Object) - Method in class mdbtools.dbengine.functions.ConCat

take two strings stick them together and return the result

execute(Object) - Method in class mdbtools.dbengine.functions.Count

execute(Object) - Method in interface mdbtools.dbengine.functions.Function

given the data for a column execute the function

execute(Object) - Method in class mdbtools.dbengine.functions.Length

execute the length function of a string

execute(Object) - Method in class mdbtools.dbengine.functions.Lower

convert column to lowercase

execute(Object) - Method in class mdbtools.dbengine.functions.Max

execute(Object) - Method in class mdbtools.dbengine.functions.Min

execute(Object) - Method in class mdbtools.dbengine.functions.Sum

execute(Object) - Method in class mdbtools.dbengine.functions.Upper

convert column to uppercase

execute() - Method in class mdbtools.dbengine.SelectEngine

EXECUTIVE_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup

EXIF - Static variable in class loci.formats.tiff.IFD

EXIF_JPEG_COMPRESSION_TYPE - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

EXIF_VERSION - Static variable in class loci.formats.tiff.IFD

EXIF_VERSION_2_1 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

An array of bytes containing the values {'0', '2', '1', '0'} to be used with the "EXIFVersion" tag to indicate EXIF version 2.1.

EXIF_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

An array of bytes containing the values {'0', '2', '2', '0'} to be used with the "EXIFVersion" tag to indicate EXIF version 2.2.

EXIFGPSTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF GPS Info IFD.

EXIFGPSTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

EXIFGPSTagSet.GPSAltitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSAltitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSAltitude

EXIFGPSTagSet.GPSAltitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSAltitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSAltitudeRef

EXIFGPSTagSet.GPSAreaInformation - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSAreaInformation() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSAreaInformation

EXIFGPSTagSet.GPSDateStamp - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDateStamp() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDateStamp

EXIFGPSTagSet.GPSDestBearing - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestBearing() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestBearing

EXIFGPSTagSet.GPSDestBearingRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestBearingRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestBearingRef

EXIFGPSTagSet.GPSDestDistance - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestDistance() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestDistance

EXIFGPSTagSet.GPSDestDistanceRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestDistanceRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestDistanceRef

EXIFGPSTagSet.GPSDestLatitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestLatitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLatitude

EXIFGPSTagSet.GPSDestLatitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestLatitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLatitudeRef

EXIFGPSTagSet.GPSDestLongitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestLongitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLongitude

EXIFGPSTagSet.GPSDestLongitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDestLongitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLongitudeRef

EXIFGPSTagSet.GPSDifferential - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDifferential() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDifferential

EXIFGPSTagSet.GPSDOP - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSDOP() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDOP

EXIFGPSTagSet.GPSImgDirection - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSImgDirection() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSImgDirection

EXIFGPSTagSet.GPSImgDirectionRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSImgDirectionRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSImgDirectionRef

EXIFGPSTagSet.GPSLatitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSLatitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLatitude

EXIFGPSTagSet.GPSLatitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSLatitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLatitudeRef

EXIFGPSTagSet.GPSLongitude - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSLongitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLongitude

EXIFGPSTagSet.GPSLongitudeRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSLongitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLongitudeRef

EXIFGPSTagSet.GPSMapDatum - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSMapDatum() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSMapDatum

EXIFGPSTagSet.GPSMeasureMode - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSMeasureMode() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSMeasureMode

EXIFGPSTagSet.GPSProcessingMethod - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSProcessingMethod() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSProcessingMethod

EXIFGPSTagSet.GPSSatellites - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSSatellites() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSSatellites

EXIFGPSTagSet.GPSSpeed - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSSpeed() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSSpeed

EXIFGPSTagSet.GPSSpeedRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSSpeedRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSSpeedRef

EXIFGPSTagSet.GPSStatus - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSStatus() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSStatus

EXIFGPSTagSet.GPSTimeStamp - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSTimeStamp() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSTimeStamp

EXIFGPSTagSet.GPSTrack - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSTrack() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSTrack

EXIFGPSTagSet.GPSTrackRef - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSTrackRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSTrackRef

EXIFGPSTagSet.GPSVersionID - Class in com.sun.media.imageio.plugins.tiff

EXIFGPSTagSet.GPSVersionID() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSVersionID

EXIFInteroperabilityTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF Interoperability IFD.

EXIFInteroperabilityTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

EXIFInteroperabilityTagSet.InteroperabilityIndex - Class in com.sun.media.imageio.plugins.tiff

EXIFInteroperabilityTagSet.InteroperabilityIndex() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet.InteroperabilityIndex

EXIFParentTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class containing the TIFF tags used to reference the EXIF and GPS IFDs.

EXIFParentTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

EXIFParentTIFFTagSet.EXIFIFDPointer - Class in com.sun.media.imageio.plugins.tiff

EXIFParentTIFFTagSet.EXIFIFDPointer() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet.EXIFIFDPointer

EXIFParentTIFFTagSet.GPSInfoIFDPointer - Class in com.sun.media.imageio.plugins.tiff

EXIFParentTIFFTagSet.GPSInfoIFDPointer() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet.GPSInfoIFDPointer

EXIFService - Interface in loci.formats.services

EXIFServiceImpl - Class in loci.formats.services

EXIFServiceImpl() - Constructor for class loci.formats.services.EXIFServiceImpl

EXIFTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF IFD.

EXIFTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

EXIFTIFFTagSet.ApertureValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ApertureValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ApertureValue

EXIFTIFFTagSet.BrightnessValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.BrightnessValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.BrightnessValue

EXIFTIFFTagSet.CFAPattern - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.CFAPattern() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.CFAPattern

EXIFTIFFTagSet.ColorSpace - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ColorSpace() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ColorSpace

EXIFTIFFTagSet.ComponentsConfiguration - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ComponentsConfiguration() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ComponentsConfiguration

EXIFTIFFTagSet.CompressedBitsPerPixel - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.CompressedBitsPerPixel() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.CompressedBitsPerPixel

EXIFTIFFTagSet.Contrast - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.Contrast() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Contrast

EXIFTIFFTagSet.CustomRendered - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.CustomRendered() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.CustomRendered

EXIFTIFFTagSet.DateTimeDigitized - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.DateTimeDigitized() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.DateTimeDigitized

EXIFTIFFTagSet.DateTimeOriginal - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.DateTimeOriginal() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.DateTimeOriginal

EXIFTIFFTagSet.DeviceSettingDescription - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.DeviceSettingDescription() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.DeviceSettingDescription

EXIFTIFFTagSet.DigitalZoomRatio - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.DigitalZoomRatio() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.DigitalZoomRatio

EXIFTIFFTagSet.EXIFVersion - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.EXIFVersion() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.EXIFVersion

EXIFTIFFTagSet.ExposureBiasValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureBiasValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureBiasValue

EXIFTIFFTagSet.ExposureIndex - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureIndex() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureIndex

EXIFTIFFTagSet.ExposureMode - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureMode() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureMode

EXIFTIFFTagSet.ExposureProgram - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureProgram() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureProgram

EXIFTIFFTagSet.ExposureTime - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ExposureTime() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ExposureTime

EXIFTIFFTagSet.FileSource - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FileSource() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FileSource

EXIFTIFFTagSet.Flash - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.Flash() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Flash

EXIFTIFFTagSet.FlashEnergy - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FlashEnergy() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FlashEnergy

EXIFTIFFTagSet.FlashPixVersion - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FlashPixVersion() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FlashPixVersion

EXIFTIFFTagSet.FNumber - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FNumber() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FNumber

EXIFTIFFTagSet.FocalLength - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalLength() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalLength

EXIFTIFFTagSet.FocalLengthIn35mmFilm - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalLengthIn35mmFilm() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalLengthIn35mmFilm

EXIFTIFFTagSet.FocalPlaneResolutionUnit - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalPlaneResolutionUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalPlaneResolutionUnit

EXIFTIFFTagSet.FocalPlaneXResolution - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalPlaneXResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalPlaneXResolution

EXIFTIFFTagSet.FocalPlaneYResolution - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.FocalPlaneYResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.FocalPlaneYResolution

EXIFTIFFTagSet.GainControl - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.GainControl() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.GainControl

EXIFTIFFTagSet.ImageUniqueID - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ImageUniqueID() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ImageUniqueID

EXIFTIFFTagSet.InteroperabilityIFD - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.InteroperabilityIFD() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.InteroperabilityIFD

EXIFTIFFTagSet.ISOSpeedRatings - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ISOSpeedRatings() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ISOSpeedRatings

EXIFTIFFTagSet.LightSource - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.LightSource() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.LightSource

EXIFTIFFTagSet.MakerNote - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.MakerNote() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.MakerNote

EXIFTIFFTagSet.MaxApertureValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.MaxApertureValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.MaxApertureValue

EXIFTIFFTagSet.MeteringMode - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.MeteringMode() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.MeteringMode

EXIFTIFFTagSet.OECF - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.OECF() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.OECF

EXIFTIFFTagSet.PixelXDimension - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.PixelXDimension() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.PixelXDimension

EXIFTIFFTagSet.PixelYDimension - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.PixelYDimension() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.PixelYDimension

EXIFTIFFTagSet.RelatedSoundFile - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.RelatedSoundFile() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.RelatedSoundFile

EXIFTIFFTagSet.Saturation - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.Saturation() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Saturation

EXIFTIFFTagSet.SceneCaptureType - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SceneCaptureType() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SceneCaptureType

EXIFTIFFTagSet.SceneType - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SceneType() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SceneType

EXIFTIFFTagSet.SensingMethod - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SensingMethod() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SensingMethod

EXIFTIFFTagSet.Sharpness - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.Sharpness() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Sharpness

EXIFTIFFTagSet.ShutterSpeedValue - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.ShutterSpeedValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ShutterSpeedValue

EXIFTIFFTagSet.SpatialFrequencyResponse - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SpatialFrequencyResponse() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SpatialFrequencyResponse

EXIFTIFFTagSet.SpectralSensitivity - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SpectralSensitivity() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SpectralSensitivity

EXIFTIFFTagSet.SubjectArea - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubjectArea() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectArea

EXIFTIFFTagSet.SubjectDistance - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubjectDistance() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectDistance

EXIFTIFFTagSet.SubjectDistanceRange - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubjectDistanceRange() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectDistanceRange

EXIFTIFFTagSet.SubjectLocation - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubjectLocation() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectLocation

EXIFTIFFTagSet.SubSecTime - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubSecTime() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubSecTime

EXIFTIFFTagSet.SubSecTimeDigitized - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubSecTimeDigitized() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubSecTimeDigitized

EXIFTIFFTagSet.SubSecTimeOriginal - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.SubSecTimeOriginal() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubSecTimeOriginal

EXIFTIFFTagSet.UserComment - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.UserComment() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.UserComment

EXIFTIFFTagSet.WhiteBalance - Class in com.sun.media.imageio.plugins.tiff

EXIFTIFFTagSet.WhiteBalance() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.WhiteBalance

exists() - Method in class loci.common.Location

Returns whether or not the pathname exists.

exists - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane

Whether or not the file meant to contain this plane exists.

exists(String) - Method in interface loci.formats.services.JHDFService

Checks if path in HDF5 file exists.

exists(String) - Method in class loci.formats.services.JHDFServiceImpl

exit() - Method in class loci.formats.tools.EditTiffG

exp - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

The quantization step "exponent" value, for each resolution level and subband, as it appears in the codestream.

EXP - Static variable in class loci.formats.codec.LosslessJPEGCodec

exp() - Method in class loci.plugins.util.RecordedImageProcessor

expandCode(byte[], int, short, int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

If expanded data doesnt fit into array only what will fit is written to buf and the return value indicates how much of the expanded code has been written to the buf.

expandColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

expandPixels(int, byte[], byte[], int) - Method in class loci.formats.in.PictReader

Expand an array of bytes.

expandRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

EXPANSION_TABLE - Static variable in class loci.formats.in.PictReader

Table used in expanding pixels that use less than 8 bits.

expBias - Variable in class ome.jxr.parser.DatastreamParser

Expected(String) - Method in class loci.poi.hssf.model.FormulaParser

Report What Was Expected

EXPERIMENT - Static variable in class loci.formats.in.LeicaReader

Experiment - Class in ome.xml.model

Experiment() - Constructor for class ome.xml.model.Experiment

Default constructor.

Experiment(Element, OMEModel) - Constructor for class ome.xml.model.Experiment

Constructs Experiment recursively from an XML DOM tree.

Experiment(Experiment) - Constructor for class ome.xml.model.Experiment

Copy constructor.

experiment - Variable in class ome.xml.model.Image

experiment - Variable in class ome.xml.model.MicrobeamManipulation

EXPERIMENT_FILE - Static variable in class loci.formats.in.BDReader

EXPERIMENT_FILE - Static variable in class loci.formats.in.ScanrReader

EXPERIMENT_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of a microscope.

experimenter - Variable in class ome.xml.model.Dataset

experimenter - Variable in class ome.xml.model.Experiment

Experimenter - Class in ome.xml.model

Experimenter() - Constructor for class ome.xml.model.Experimenter

Default constructor.

Experimenter(Element, OMEModel) - Constructor for class ome.xml.model.Experimenter

Constructs Experimenter recursively from an XML DOM tree.

Experimenter(Experimenter) - Constructor for class ome.xml.model.Experimenter

Copy constructor.

experimenter - Variable in class ome.xml.model.Image

experimenter - Variable in class ome.xml.model.MicrobeamManipulation

experimenter - Variable in class ome.xml.model.Project

experimenterGroup - Variable in class ome.xml.model.Dataset

ExperimenterGroup - Class in ome.xml.model

ExperimenterGroup() - Constructor for class ome.xml.model.ExperimenterGroup

Default constructor.

ExperimenterGroup(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroup

Constructs ExperimenterGroup recursively from an XML DOM tree.

ExperimenterGroup(ExperimenterGroup) - Constructor for class ome.xml.model.ExperimenterGroup

Copy constructor.

experimenterGroup - Variable in class ome.xml.model.Image

experimenterGroup - Variable in class ome.xml.model.Project

experimenterGroupLinks - Variable in class ome.xml.model.Annotation

experimenterGroupLinks - Variable in class ome.xml.model.Experimenter

ExperimenterGroupRef - Class in ome.xml.model

ExperimenterGroupRef() - Constructor for class ome.xml.model.ExperimenterGroupRef

Default constructor.

ExperimenterGroupRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroupRef

Constructs ExperimenterGroupRef recursively from an XML DOM tree.

ExperimenterGroupRef(ExperimenterGroupRef) - Constructor for class ome.xml.model.ExperimenterGroupRef

Copy constructor.

experimenterGroups - Variable in class ome.xml.model.Leader

experimenterGroups - Variable in class ome.xml.model.OME

experimenterLinks - Variable in class ome.xml.model.Annotation

experimenterLinks - Variable in class ome.xml.model.ExperimenterGroup

experimenterName - Variable in class loci.formats.in.ImaconReader

ExperimenterRef - Class in ome.xml.model

ExperimenterRef() - Constructor for class ome.xml.model.ExperimenterRef

Default constructor.

ExperimenterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterRef

Constructs ExperimenterRef recursively from an XML DOM tree.

ExperimenterRef(ExperimenterRef) - Constructor for class ome.xml.model.ExperimenterRef

Copy constructor.

experimenters - Variable in class ome.xml.model.OME

ExperimentRef - Class in ome.xml.model

ExperimentRef() - Constructor for class ome.xml.model.ExperimentRef

Default constructor.

ExperimentRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimentRef

Constructs ExperimentRef recursively from an XML DOM tree.

ExperimentRef(ExperimentRef) - Constructor for class ome.xml.model.ExperimentRef

Copy constructor.

experiments - Variable in class ome.xml.model.Experimenter

experiments - Variable in class ome.xml.model.OME

ExperimentType - Enum in ome.xml.model.enums

ExperimentType(String) - Constructor for enum ome.xml.model.enums.ExperimentType

ExperimentTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ExperimentType.

ExperimentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

expH - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

EXPIRED_QT_MSG - Static variable in class loci.formats.gui.LegacyQTTools

expiredQT - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating QuickTime for Java has expired.

explode() - Method in class loci.formats.FilePatternBlock

exporter - Variable in class loci.plugins.LociExporter

Exporter - Class in loci.plugins.out

Core logic for the Bio-Formats Exporter ImageJ plugin.

Exporter(LociExporter, ImagePlus) - Constructor for class loci.plugins.out.Exporter

exposure - Variable in class loci.formats.in.BDReader

exposure - Variable in class loci.formats.in.InCellReader.Image

exposure - Variable in class loci.formats.in.InCellReader.InCellHandler

exposure - Variable in class loci.formats.in.ZeissCZIReader.Channel

EXPOSURE_BIAS_VALUE - Static variable in class loci.formats.tiff.IFD

EXPOSURE_INDEX - Static variable in class loci.formats.tiff.IFD

EXPOSURE_METERING_MODE - Static variable in class loci.formats.in.CellSensReader

EXPOSURE_MODE - Static variable in class loci.formats.tiff.IFD

EXPOSURE_MODE_AUTO_BRACKET - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_MODE_AUTO_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_MODE_MANUAL_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_PROGRAM - Static variable in class loci.formats.tiff.IFD

EXPOSURE_PROGRAM_ACTION_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_APERTURE_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_CREATIVE_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_LANDSCAPE_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_MANUAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_MAX_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_NORMAL_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_NOT_DEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_PORTRAIT_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_SHUTTER_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_TIME - Static variable in class loci.formats.in.CellSensReader

EXPOSURE_TIME - Static variable in class loci.formats.in.FluoviewReader

EXPOSURE_TIME - Static variable in class loci.formats.tiff.IFD

EXIF tags.

EXPOSURE_TIME - Static variable in class loci.tests.testng.Configuration

exposures - Variable in class loci.formats.in.MetamorphHandler

exposures - Variable in class loci.formats.in.ScanrReader

exposureScale - Variable in class loci.formats.in.SVSReader

exposureTime - Variable in class loci.formats.in.BaseZeissReader

exposureTime - Variable in class loci.formats.in.BioRadSCNReader

exposureTime - Variable in class loci.formats.in.FakeReader

exposure time per plane info

exposureTime - Variable in class loci.formats.in.FluoviewReader

exposureTime - Variable in class loci.formats.in.IvisionReader

exposureTime - Variable in class loci.formats.in.LeicaReader

exposureTime - Variable in class loci.formats.in.LiFlimReader

exposureTime - Variable in class loci.formats.in.MetamorphReader

exposureTime - Variable in class loci.formats.in.MicromanagerReader.Position

exposureTime - Variable in class loci.formats.in.NativeND2Reader

exposureTime - Variable in class loci.formats.in.ND2Handler

exposureTime - Variable in class loci.formats.in.SVSReader

exposureTime - Variable in class loci.formats.in.ZeissCZIReader.SubBlock

exposureTime - Variable in class ome.xml.model.Plane

exposureTimes - Variable in class loci.formats.in.CellSensReader.Pyramid

exposureTimes - Variable in class loci.formats.in.SimplePCITiffReader

exposureTimes - Variable in class loci.formats.in.TillVisionReader

ExpPtg - Class in loci.poi.hssf.record.formula

ExpPtg() - Constructor for class loci.poi.hssf.record.formula.ExpPtg

Creates new ExpPtg

ExpPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ExpPtg

Creates new ExpPtg

Expression() - Method in class loci.poi.hssf.model.FormulaParser

Parse and Translate an Expression

expTime - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Exposure time in seconds.

expTimes - Variable in class loci.formats.in.LIFReader

expV - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

extBit - Static variable in class loci.poi.hssf.record.UnicodeString

extCount - Variable in class loci.formats.in.PerkinElmerReader

ExtendedFormatRecord - Class in loci.poi.hssf.record

Title: Extended Format Record Description: Probably one of the more complex records.

ExtendedFormatRecord() - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord

Constructor ExtendedFormatRecord

ExtendedFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord

Constructs an ExtendedFormat record and sets its fields appropriately.

EXTENSION - Static variable in class loci.formats.in.GIFReader

ExtensionFileFilter - Class in loci.formats.gui

A file filter based on file extensions, for use with a JFileChooser.

ExtensionFileFilter(String, String) - Constructor for class loci.formats.gui.ExtensionFileFilter

Constructs a new filter that accepts the given extension.

ExtensionFileFilter(String[], String) - Constructor for class loci.formats.gui.ExtensionFileFilter

Constructs a new filter that accepts the given extensions.

extensions - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

extensions - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

extensions - Variable in class loci.plugins.config.ConfigWindow

extensions - Variable in class loci.plugins.macro.MacroFunctions

external - Variable in class ome.xml.model.BinaryFile

External - Class in ome.xml.model

External() - Constructor for class ome.xml.model.External

Default constructor.

External(Element, OMEModel) - Constructor for class ome.xml.model.External

Constructs External recursively from an XML DOM tree.

External(External) - Constructor for class ome.xml.model.External

Copy constructor.

EXTERNAL_DATA_VOLUME - Static variable in class loci.formats.in.CellSensReader

EXTERNAL_FILE_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

externalDescription - Variable in class ome.xml.model.Well

externalIdentifier - Variable in class ome.xml.model.Plate

externalIdentifier - Variable in class ome.xml.model.Well

externals - Variable in class loci.formats.FileStitcher

externSheet - Variable in class loci.poi.hssf.model.Workbook

Holds the Extern Sheet with references to bound sheets

externsheetPos - Variable in class loci.poi.hssf.model.WorkbookRecordList

ExternSheetRecord - Class in loci.poi.hssf.record

Title: Extern Sheet

ExternSheetRecord() - Constructor for class loci.poi.hssf.record.ExternSheetRecord

ExternSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetRecord

Constructs a Extern Sheet record and sets its fields appropriately.

ExternSheetSubRecord - Class in loci.poi.hssf.record

Title: A sub Record for Extern Sheet

ExternSheetSubRecord() - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord

a Constractor for making new sub record

ExternSheetSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord

Constructs a Extern Sheet Sub Record record and sets its fields appropriately.

extHdrFields - Variable in class loci.formats.in.DeltavisionReader

Initialize an array of Extended Header Field structures.

extHeaderSize - Variable in class loci.formats.in.MRCReader

Size of extended header

extIndex - Variable in class loci.formats.in.PerkinElmerReader.PixelsFile

EXTRA_IMAGES - Static variable in class loci.formats.in.AFIReader

EXTRA_SAMPLES - Static variable in class loci.formats.in.CellSensReader

EXTRA_SAMPLES - Static variable in class loci.formats.tiff.IFD

EXTRA_SAMPLES_ASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

EXTRA_SAMPLES_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

EXTRA_SAMPLES_UNASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

EXTRA_SAMPLES_UNSPECIFIED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

extract(ListManagedBlock[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

create a list of SmallDocumentBlock's from raw data

extractCoreMetaData() - Method in class loci.formats.tools.AmiraParameters

extractMainMarkSeg(short, RandomAccessIO) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

This method extract a marker segment from the main header and stores it into a byte buffer for the second pass.

extractText(byte[]) - Static method in class mdbtools.libmdb.Util

extractTilePartMarkSeg(short, RandomAccessIO, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

This method extracts a marker segment in a tile-part header and stores it into a byte buffer for the second pass.

extractTokensFromFakeSeries(String) - Method in class loci.formats.in.FakeReader

extraFiles - Variable in class loci.formats.in.VolocityReader

extraLength - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

extralyrs - Variable in class jj2000.j2k.entropy.encoder.LayersInfo

The number of extra layers to be added after an optimized layer.

extras - Variable in class loci.formats.in.LeicaHandler

extraSamples - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the ExtraSamples tag.

extraSamples - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

exts - Variable in class loci.formats.gui.ExtensionFileFilter

List of valid extensions.

extSize - Variable in class loci.formats.in.DeltavisionReader

Size of extended header.

ExtSSTInfoSubRecord - Class in loci.poi.hssf.record

Extended SST table info subrecord

ExtSSTInfoSubRecord() - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord

Creates new ExtSSTInfoSubRecord

ExtSSTInfoSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord

ExtSSTRecord - Class in loci.poi.hssf.record

Title: Extended Static String Table

ExtSSTRecord() - Constructor for class loci.poi.hssf.record.ExtSSTRecord

ExtSSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTRecord

Constructs a EOFRecord record and sets its fields appropriately.

exWave - Variable in class loci.formats.in.BDReader

exWave - Variable in class loci.formats.in.FV1000Reader.ChannelData

exWave - Variable in class loci.formats.in.ImarisHDFReader

exWave - Variable in class loci.formats.in.LeicaHandler.Channel

exWave - Variable in class loci.formats.in.ND2Handler

exWave - Variable in class loci.formats.in.NikonTiffReader

exWavelen - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields

Excitation filter wavelength.

exWavelength - Variable in class loci.formats.in.BaseZeissReader

exWavelength - Variable in class loci.formats.in.OperettaReader.Plane

exWaves - Variable in class loci.formats.in.InCellReader

exWaves - Variable in class loci.formats.in.LeicaReader

exWaves - Variable in class loci.formats.in.LIFReader

F

f - Variable in class mdbtools.libmdb.MdbHandle

F_KEY - Static variable in class loci.formats.in.LiFlimReader

F_NUMBER - Static variable in class loci.formats.tiff.IFD

FacilityManager - Class in jj2000.j2k.util

This class manages common facilities for mutithreading environments, It can register different facilities for each thread, and also a default one, so that they can be referred by static methods, while possibly having different ones for different threads.

FacilityManager() - Constructor for class jj2000.j2k.util.FacilityManager

factor - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension

Factor() - Method in class loci.poi.hssf.model.FormulaParser

Parse and Translate a Math Factor

factors - Variable in class loci.formats.in.FlexReader.FlexFile

factors - Variable in class loci.formats.in.FlexReader.FlexHandler

FACTORY - Static variable in class loci.common.xml.XMLTools

factory - Variable in class loci.formats.FormatReader

failureClass - Variable in exception loci.common.services.DependencyException

The class that was used in a failed instantiation.

FAKE_EXT - Static variable in class loci.formats.ResourceNamer

fakeBigTiff - Variable in class loci.formats.tiff.TiffParser

Whether or not 64-bit offsets are used for non-BigTIFF files.

FakeImage - Class in loci.formats.tools

Generates fake image structures.

FakeImage(Location) - Constructor for class loci.formats.tools.FakeImage

FakeReader - Class in loci.formats.in

FakeReader is the file format reader for faking input data.

FakeReader() - Constructor for class loci.formats.in.FakeReader

Constructs a new fake reader.

fakeSeries - Variable in class loci.formats.in.FakeReader

List of used files if the fake is a SPW structure

FALSE - Static variable in class loci.poi.hssf.record.UseSelFSRecord

falseColor - Variable in class loci.formats.CoreMetadata

Indicates whether or not we can ignore the color map (if present).

FAN_SPEED - Static variable in class loci.formats.in.CellSensReader

fastCodeSymbols(int, int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This method performs the coding of the symbol 'bit', using context 'ctxt', 'n' times, using the MQ-coder speedup mode if possible.

fastDecodeSymbols(int[], int, int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Decodes 'n' symbols from the bit stream using the same context 'ctxt'.

fatal(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

fatal(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

fatal(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

fatal(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

FATAL - Static variable in class loci.poi.util.POILogger

fatalError(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler

fatalError(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler

fatalError(TransformerException) - Method in class loci.common.xml.XMLTools.XMLListener

FaxTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the extra tags found in a TIFF-F (RFC 2036) file.

FaxTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

FaxTIFFTagSet.BadFaxLines - Class in com.sun.media.imageio.plugins.tiff

FaxTIFFTagSet.BadFaxLines() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet.BadFaxLines

FaxTIFFTagSet.CleanFaxData - Class in com.sun.media.imageio.plugins.tiff

FaxTIFFTagSet.CleanFaxData() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet.CleanFaxData

FaxTIFFTagSet.ConsecutiveBadFaxLines - Class in com.sun.media.imageio.plugins.tiff

FaxTIFFTagSet.ConsecutiveBadFaxLines() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet.ConsecutiveBadFaxLines

fb - Variable in class loci.formats.in.BaseZeissReader.Shape

fcc - Variable in class loci.formats.in.AVIReader

FCS_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created in FIFO mode (setup, data blocks = Decay, FCS, FIDA, FILDA & MCS curves for each used routing channel).

fcsDecayCalc - Variable in class loci.formats.in.SDTInfo

Bit 0 = 1 - decay curve calculated.

fcsPoints - Variable in class loci.formats.in.SDTInfo

No of FCS values.

fcsType - Variable in class loci.formats.in.SDTInfo

0 - linear FCS with log binning (100 bins/log) when bit 15 = 1 (0x8000) - Multi-Tau FCS where bits 14-0 = ktau parameter.

fctlCount - Variable in class loci.formats.in.APNGReader.PNGInputStream

FD - Static variable in class loci.formats.in.DicomReader

fd - Variable in class mdbtools.libmdb.MdbFile

fdatValid - Variable in class loci.formats.in.APNGReader.PNGInputStream

FEATURE - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants

FEI_MAGIC_STRING - Static variable in class loci.formats.in.FEIReader

FEIReader - Class in loci.formats.in

FEIReader is the file format reader for FEI and Philips .img files.

FEIReader() - Constructor for class loci.formats.in.FEIReader

Constructs a new FEI reader.

FEITiffReader - Class in loci.formats.in

FEITiffReader is the file format reader for TIFF files produced by various FEI software.

FEITiffReader() - Constructor for class loci.formats.in.FEITiffReader

FEITiffReader.FEIHandler - Class in loci.formats.in

FEITiffReader.FEIHandler() - Constructor for class loci.formats.in.FEITiffReader.FEIHandler

FEMTO(Unit<T>) - Static method in class ome.units.UNITS

fetchBlocks(int, BlockList) - Method in class loci.poi.poifs.storage.BlockAllocationTableReader

walk the entries from a specified point and return the associated blocks.

fetchBlocks(int) - Method in interface loci.poi.poifs.storage.BlockList

get the blocks making up a particular stream in the list.

fetchBlocks(int) - Method in class loci.poi.poifs.storage.BlockListImpl

get the blocks making up a particular stream in the list.

fetchRow(MdbTableDef) - Method in class loci.formats.services.MDBServiceImpl

Fetches the next row from the table, ignoring potential parsing exceptions.

ff - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

fHighByte - Variable in class loci.poi.hssf.record.formula.StringPtg

fHighByte - Variable in class loci.poi.hssf.record.StyleRecord

FHZ - Static variable in class ome.units.UNITS

fidaPoints - Variable in class loci.formats.in.SDTInfo

No of FIDA values.

fidaTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for FIDA histogram.

field - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

field - Variable in class loci.formats.in.FlexReader.FlexFile

field - Variable in class loci.formats.in.OperettaReader.Plane

FIELD - Static variable in class loci.formats.ResourceNamer

field1_x_position - Variable in class loci.poi.hssf.record.ChartFormatRecord

field2_y_position - Variable in class loci.poi.hssf.record.ChartFormatRecord

field3_width - Variable in class loci.poi.hssf.record.ChartFormatRecord

field4_height - Variable in class loci.poi.hssf.record.ChartFormatRecord

field5_grbit - Variable in class loci.poi.hssf.record.ChartFormatRecord

field_10_compressionFlag - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_10_font_name_len - Variable in class loci.poi.hssf.record.FontRecord

field_10_footermargin - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_10_indexOfColorValue - Variable in class loci.poi.hssf.record.TextRecord

field_10_length_status_bar_text - Variable in class loci.poi.hssf.record.NameRecord

field_10_options - Variable in class loci.poi.hssf.record.TickRecord

field_10_unused2 - Variable in class loci.poi.ddf.EscherBSERecord

field_11_compressed_unicode_flag - Variable in class loci.poi.hssf.record.NameRecord

field_11_copies - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_11_filter - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_11_font_name - Variable in class loci.poi.hssf.record.FontRecord

field_11_options2 - Variable in class loci.poi.hssf.record.TextRecord

field_11_tickColor - Variable in class loci.poi.hssf.record.TickRecord

field_11_unused3 - Variable in class loci.poi.ddf.EscherBSERecord

field_12_blipRecord - Variable in class loci.poi.ddf.EscherBSERecord

field_12_builtIn_name - Variable in class loci.poi.hssf.record.NameRecord

field_12_data - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_12_name_text - Variable in class loci.poi.hssf.record.NameRecord

field_12_textRotation - Variable in class loci.poi.hssf.record.TextRecord

field_12_zero5 - Variable in class loci.poi.hssf.record.TickRecord

field_13_name_definition - Variable in class loci.poi.hssf.record.NameRecord

field_14_custom_menu_text - Variable in class loci.poi.hssf.record.NameRecord

field_15_description_text - Variable in class loci.poi.hssf.record.NameRecord

field_16_help_topic_text - Variable in class loci.poi.hssf.record.NameRecord

field_17_status_bar_text - Variable in class loci.poi.hssf.record.NameRecord

field_1_addMenuCount - Variable in class loci.poi.hssf.record.MMSRecord

field_1_anchorId - Variable in class loci.poi.hssf.record.ObjectLinkRecord

field_1_axisType - Variable in class loci.poi.hssf.record.AxisLineFormatRecord

field_1_axisType - Variable in class loci.poi.hssf.record.AxisParentRecord

field_1_axisType - Variable in class loci.poi.hssf.record.AxisRecord

field_1_backup - Variable in class loci.poi.hssf.record.BackupRecord

field_1_barSpace - Variable in class loci.poi.hssf.record.BarRecord

field_1_blipTypeWin32 - Variable in class loci.poi.ddf.EscherBSERecord

field_1_borderType - Variable in class loci.poi.hssf.record.FrameRecord

field_1_calcmode - Variable in class loci.poi.hssf.record.CalcModeRecord

field_1_categoryDataType - Variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

field_1_categoryDataType - Variable in class loci.poi.hssf.record.SeriesRecord

field_1_charCount - Variable in class loci.poi.hssf.record.UnicodeString

field_1_chartGroupIndex - Variable in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

field_1_chartGroupIndex - Variable in class loci.poi.hssf.record.SeriesToChartGroupRecord

field_1_codepage - Variable in class loci.poi.hssf.record.CodepageRecord

field_1_codepage - Variable in class loci.poi.hssf.record.InterfaceHdrRecord

field_1_col_width - Variable in class loci.poi.hssf.record.DefaultColWidthRecord

field_1_color1 - Variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

field_1_count - Variable in class loci.poi.hssf.record.FnGroupCountRecord

field_1_crossingPoint - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

field_1_data - Variable in class loci.poi.hssf.record.ContinueRecord

field_1_default_country - Variable in class loci.poi.hssf.record.CountryRecord

field_1_drawingGroupId - Variable in class loci.poi.ddf.EscherDggRecord.FileIdCluster

field_1_dsf - Variable in class loci.poi.hssf.record.DSFRecord

field_1_dx1 - Variable in class loci.poi.ddf.EscherChildAnchorRecord

field_1_encryptedpassword - Variable in class loci.poi.hssf.record.FilePassRecord

field_1_error_code - Variable in class loci.poi.hssf.record.formula.ErrPtg

field_1_first_col - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_1_first_row - Variable in class loci.poi.hssf.record.DimensionsRecord

field_1_first_row - Variable in class loci.poi.hssf.record.formula.AreaPtg

field_1_first_row - Variable in class loci.poi.hssf.record.formula.ExpPtg

field_1_first_row - Variable in class loci.poi.hssf.record.SelectionRecord.Reference

field_1_first_row - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_1_flag - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_1_flag - Variable in class loci.poi.hssf.record.UseSelFSRecord

field_1_flags - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

field_1_font_height - Variable in class loci.poi.hssf.record.FontRecord

field_1_font_index - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_1_fontIndex - Variable in class loci.poi.hssf.record.FontIndexRecord

field_1_footer_len - Variable in class loci.poi.hssf.record.FooterRecord

field_1_foregroundColor - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_1_formatFlags - Variable in class loci.poi.hssf.record.AreaRecord

field_1_formatFlags - Variable in class loci.poi.hssf.record.SeriesLabelsRecord

field_1_formatIndex - Variable in class loci.poi.hssf.record.NumberFormatIndexRecord

field_1_gridset_flag - Variable in class loci.poi.hssf.record.GridsetRecord

field_1_h_hold - Variable in class loci.poi.hssf.record.WindowOneRecord

field_1_hcenter - Variable in class loci.poi.hssf.record.HCenterRecord

field_1_header_len - Variable in class loci.poi.hssf.record.HeaderRecord

field_1_hide_obj - Variable in class loci.poi.hssf.record.HideObjRecord

field_1_horizontalAlignment - Variable in class loci.poi.hssf.record.TextRecord

field_1_horizontalScale - Variable in class loci.poi.hssf.record.PlotGrowthRecord

field_1_id - Variable in class loci.poi.hssf.record.SeriesTextRecord

field_1_index - Variable in class loci.poi.hssf.record.SeriesIndexRecord

field_1_index_code - Variable in class loci.poi.hssf.record.FormatRecord

field_1_index_extern_sheet - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_1_index_extern_sheet - Variable in class loci.poi.hssf.record.formula.Ref3DPtg

field_1_index_to_supbook - Variable in class loci.poi.hssf.record.ExternSheetSubRecord

field_1_iteration - Variable in class loci.poi.hssf.record.IterationRecord

field_1_iterations - Variable in class loci.poi.hssf.record.CalcCountRecord

field_1_ixals - Variable in class loci.poi.hssf.record.formula.NameXPtg

field_1_label_index - Variable in class loci.poi.hssf.record.formula.NamePtg

field_1_left_row_gutter - Variable in class loci.poi.hssf.record.GutsRecord

field_1_len_ref_subexpression - Variable in class loci.poi.hssf.record.formula.MemFuncPtg

field_1_length - Variable in class loci.poi.hssf.record.formula.StringPtg

field_1_lineColor - Variable in class loci.poi.hssf.record.LineFormatRecord

field_1_linkType - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_1_majorTickType - Variable in class loci.poi.hssf.record.TickRecord

field_1_margin - Variable in class loci.poi.hssf.record.BottomMarginRecord

field_1_margin - Variable in class loci.poi.hssf.record.LeftMarginRecord

field_1_margin - Variable in class loci.poi.hssf.record.RightMarginRecord

field_1_margin - Variable in class loci.poi.hssf.record.TopMarginRecord

field_1_max_change - Variable in class loci.poi.hssf.record.DeltaRecord

field_1_minimumAxisValue - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_1_minimumCategory - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_1_mode - Variable in class loci.poi.hssf.record.RefModeRecord

field_1_num_args - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

field_1_num_strings - Variable in class loci.poi.hssf.record.SSTRecord

union of strings in the SST and EXTSST

field_1_numAxis - Variable in class loci.poi.hssf.record.AxisUsedRecord

field_1_number_of_REF_sturcutres - Variable in class loci.poi.hssf.record.ExternSheetRecord

field_1_number_of_sheets - Variable in class loci.poi.hssf.record.SupBookRecord

field_1_numcolors - Variable in class loci.poi.hssf.record.PaletteRecord

field_1_numerator - Variable in class loci.poi.hssf.record.SCLRecord

field_1_numShapes - Variable in class loci.poi.ddf.EscherDgRecord

field_1_objectType - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_1_option_flag - Variable in class loci.poi.hssf.record.NameRecord

field_1_option_flags - Variable in class loci.poi.hssf.record.DefaultRowHeightRecord

field_1_options - Variable in class loci.poi.hssf.record.DatRecord

field_1_options - Variable in class loci.poi.hssf.record.formula.AttrPtg

field_1_options - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_1_options - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_1_pane - Variable in class loci.poi.hssf.record.SelectionRecord

field_1_paper_size - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_1_password - Variable in class loci.poi.hssf.record.PasswordRecord

field_1_password - Variable in class loci.poi.hssf.record.PasswordRev4Record

field_1_pointNumber - Variable in class loci.poi.hssf.record.DataFormatRecord

field_1_position_of_BOF - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_1_precision - Variable in class loci.poi.hssf.record.PrecisionRecord

field_1_print_gridlines - Variable in class loci.poi.hssf.record.PrintGridlinesRecord

field_1_print_headers - Variable in class loci.poi.hssf.record.PrintHeadersRecord

field_1_protect - Variable in class loci.poi.hssf.record.ObjectProtectRecord

field_1_protect - Variable in class loci.poi.hssf.record.ProtectionRev4Record

field_1_protect - Variable in class loci.poi.hssf.record.ProtectRecord

field_1_protect - Variable in class loci.poi.hssf.record.ScenarioProtectRecord

field_1_protect - Variable in class loci.poi.hssf.record.WindowProtectRecord

field_1_readonly - Variable in class loci.poi.hssf.record.FileSharingRecord

field_1_recalc - Variable in class loci.poi.hssf.record.SaveRecalcRecord

field_1_recalcids - Variable in class loci.poi.hssf.record.RecalcIdRecord

field_1_rectX1 - Variable in class loci.poi.ddf.EscherSpgrRecord

field_1_refreshall - Variable in class loci.poi.hssf.record.RefreshAllRecord

field_1_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_1_reserved - Variable in class loci.poi.hssf.record.formula.MemAreaPtg

field_1_reserved - Variable in class loci.poi.hssf.record.formula.RefErrorPtg

field_1_row - Variable in class loci.poi.hssf.record.BlankRecord

field_1_row - Variable in class loci.poi.hssf.record.BoolErrRecord

field_1_row - Variable in class loci.poi.hssf.record.formula.ReferencePtg

The row number, between 0 and 65535, but stored as a signed short between -32767 and 32768.

field_1_row - Variable in class loci.poi.hssf.record.FormulaRecord

field_1_row - Variable in class loci.poi.hssf.record.LabelRecord

field_1_row - Variable in class loci.poi.hssf.record.LabelSSTRecord

field_1_row - Variable in class loci.poi.hssf.record.MulBlankRecord

field_1_row - Variable in class loci.poi.hssf.record.MulRKRecord

field_1_row - Variable in class loci.poi.hssf.record.NoteRecord

field_1_row - Variable in class loci.poi.hssf.record.NumberRecord

field_1_row - Variable in class loci.poi.hssf.record.RKRecord

field_1_row_number - Variable in class loci.poi.hssf.record.RowRecord

field_1_row_offset - Variable in class loci.poi.hssf.record.DBCellRecord

field_1_save_link_values - Variable in class loci.poi.hssf.record.BookBoolRecord

field_1_secondaryUID - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_1_seriesNumbers - Variable in class loci.poi.hssf.record.SeriesListRecord

field_1_shapeId - Variable in class loci.poi.ddf.EscherSpRecord

field_1_shapeIdMax - Variable in class loci.poi.ddf.EscherDggRecord

field_1_stream_id_offset - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_1_stream_pos - Variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord

field_1_string_length - Variable in class loci.poi.hssf.record.StringRecord

field_1_strings_per_bucket - Variable in class loci.poi.hssf.record.ExtSSTRecord

field_1_tabids - Variable in class loci.poi.hssf.record.TabIdRecord

field_1_UID - Variable in class loci.poi.ddf.EscherBitmapBlip

field_1_UID - Variable in class loci.poi.ddf.EscherMetafileBlip

field_1_UID - Variable in class loci.poi.ddf.EscherPictBlip

field_1_units - Variable in class loci.poi.hssf.record.UnitsRecord

field_1_username - Variable in class loci.poi.hssf.record.WriteAccessRecord

field_1_value - Variable in class loci.poi.hssf.record.formula.BoolPtg

field_1_value - Variable in class loci.poi.hssf.record.formula.IntPtg

field_1_value - Variable in class loci.poi.hssf.record.formula.NumberPtg

field_1_vcenter - Variable in class loci.poi.hssf.record.VCenterRecord

field_1_version - Variable in class loci.poi.hssf.record.BOFRecord

field_1_window - Variable in class loci.poi.hssf.record.DateWindow1904Record

field_1_wsbool - Variable in class loci.poi.hssf.record.WSBoolRecord

field_1_x - Variable in class loci.poi.hssf.record.ChartRecord

field_1_x - Variable in class loci.poi.hssf.record.PaneRecord

field_1_xAxisUpperLeft - Variable in class loci.poi.hssf.record.LegendRecord

field_1_xBasis - Variable in class loci.poi.hssf.record.FontBasisRecord

field_1_xf_index - Variable in class loci.poi.hssf.record.StyleRecord

field_1_zero - Variable in class loci.poi.hssf.record.IndexRecord

field_2_attributes - Variable in class loci.poi.hssf.record.FontRecord

field_2_backgroundColor - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_2_blipTypeMacOS - Variable in class loci.poi.ddf.EscherBSERecord

field_2_bucket_sst_offset - Variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord

field_2_builtin_style - Variable in class loci.poi.hssf.record.StyleRecord

field_2_cacheOfSize - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_2_categorySpace - Variable in class loci.poi.hssf.record.BarRecord

field_2_cb - Variable in class loci.poi.ddf.EscherMetafileBlip

field_2_cb - Variable in class loci.poi.ddf.EscherPictBlip

field_2_cell_offsets - Variable in class loci.poi.hssf.record.DBCellRecord

field_2_col - Variable in class loci.poi.hssf.record.BlankRecord

field_2_col - Variable in class loci.poi.hssf.record.formula.ReferencePtg

The column number, between 0 and ??

field_2_col - Variable in class loci.poi.hssf.record.NoteRecord

field_2_col - Variable in class loci.poi.hssf.record.NumberRecord

field_2_col - Variable in class loci.poi.hssf.record.RKRecord

field_2_col1 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_2_color2 - Variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

field_2_colors - Variable in class loci.poi.hssf.record.PaletteRecord

field_2_column - Variable in class loci.poi.hssf.record.BoolErrRecord

field_2_column - Variable in class loci.poi.hssf.record.FormulaRecord

field_2_column - Variable in class loci.poi.hssf.record.LabelRecord

field_2_column - Variable in class loci.poi.hssf.record.LabelSSTRecord

field_2_current_country - Variable in class loci.poi.hssf.record.CountryRecord

field_2_data - Variable in class loci.poi.hssf.record.formula.AttrPtg

field_2_delMenuCount - Variable in class loci.poi.hssf.record.MMSRecord

field_2_denominator - Variable in class loci.poi.hssf.record.SCLRecord

field_2_dy1 - Variable in class loci.poi.ddf.EscherChildAnchorRecord

field_2_empty - Variable in class loci.poi.hssf.record.SheetPropertiesRecord

field_2_first_col - Variable in class loci.poi.hssf.record.formula.ExpPtg

field_2_first_col - Variable in class loci.poi.hssf.record.MulBlankRecord

field_2_first_col - Variable in class loci.poi.hssf.record.MulRKRecord

field_2_first_col - Variable in class loci.poi.hssf.record.RowRecord

field_2_first_row - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_2_first_row - Variable in class loci.poi.hssf.record.IndexRecord

field_2_flag - Variable in class loci.poi.hssf.record.SupBookRecord

field_2_flags - Variable in class loci.poi.ddf.EscherSpRecord

field_2_fnc_index - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

field_2_format_index - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_2_ilbl - Variable in class loci.poi.hssf.record.formula.NameXPtg

field_2_index_to_first_supbook_sheet - Variable in class loci.poi.hssf.record.ExternSheetSubRecord

field_2_keyboard_shortcut - Variable in class loci.poi.hssf.record.NameRecord

field_2_labelFrequency - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

field_2_last_col - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_2_last_row - Variable in class loci.poi.hssf.record.DimensionsRecord

field_2_last_row - Variable in class loci.poi.hssf.record.formula.AreaPtg

field_2_last_row - Variable in class loci.poi.hssf.record.SelectionRecord.Reference

field_2_last_row - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_2_lastMSOSPID - Variable in class loci.poi.ddf.EscherDgRecord

field_2_linePattern - Variable in class loci.poi.hssf.record.LineFormatRecord

field_2_link1 - Variable in class loci.poi.hssf.record.ObjectLinkRecord

field_2_marker - Variable in class loci.poi.ddf.EscherBitmapBlip

field_2_maximumAxisValue - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_2_maximumCategory - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_2_minorTickType - Variable in class loci.poi.hssf.record.TickRecord

field_2_name_length - Variable in class loci.poi.hssf.record.StyleRecord

field_2_num_unique_strings - Variable in class loci.poi.hssf.record.SSTRecord

according to docs ONLY SST

field_2_numShapeIdsUsed - Variable in class loci.poi.ddf.EscherDggRecord.FileIdCluster

field_2_objectId - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_2_option_flags - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_2_optionflags - Variable in class loci.poi.hssf.record.UnicodeString

field_2_options - Variable in class loci.poi.hssf.record.formula.StringPtg

field_2_options - Variable in class loci.poi.hssf.record.FrameRecord

field_2_password - Variable in class loci.poi.hssf.record.FileSharingRecord

field_2_rectY1 - Variable in class loci.poi.ddf.EscherSpgrRecord

field_2_REF_structures - Variable in class loci.poi.hssf.record.ExternSheetRecord

field_2_referenceType - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_2_regions - Variable in class loci.poi.hssf.record.MergeCellsRecord

field_2_reserved - Variable in class loci.poi.hssf.record.FooterRecord

field_2_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_2_reserved - Variable in class loci.poi.hssf.record.HeaderRecord

field_2_reserved1 - Variable in class loci.poi.hssf.record.AxisRecord

field_2_row - Variable in class loci.poi.hssf.record.formula.Ref3DPtg

field_2_row_active_cell - Variable in class loci.poi.hssf.record.SelectionRecord

field_2_row_height - Variable in class loci.poi.hssf.record.DefaultRowHeightRecord

field_2_scale - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_2_seriesIndex - Variable in class loci.poi.hssf.record.DataFormatRecord

field_2_sst_info - Variable in class loci.poi.hssf.record.ExtSSTRecord

field_2_subex_len - Variable in class loci.poi.hssf.record.formula.MemAreaPtg

field_2_textLength - Variable in class loci.poi.hssf.record.SeriesTextRecord

field_2_textOrientation - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_2_top_col_gutter - Variable in class loci.poi.hssf.record.GutsRecord

field_2_top_row - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_2_type - Variable in class loci.poi.hssf.record.BOFRecord

field_2_unicode_flag - Variable in class loci.poi.hssf.record.StringRecord

field_2_unknown - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_2_v_hold - Variable in class loci.poi.hssf.record.WindowOneRecord

field_2_valuesDataType - Variable in class loci.poi.hssf.record.SeriesRecord

field_2_verticalAlignment - Variable in class loci.poi.hssf.record.TextRecord

field_2_verticalScale - Variable in class loci.poi.hssf.record.PlotGrowthRecord

field_2_wsbool - Variable in class loci.poi.hssf.record.WSBoolRecord

field_2_x - Variable in class loci.poi.hssf.record.AxisParentRecord

field_2_y - Variable in class loci.poi.hssf.record.ChartRecord

field_2_y - Variable in class loci.poi.hssf.record.PaneRecord

field_2_yAxisUpperLeft - Variable in class loci.poi.hssf.record.LegendRecord

field_2_yBasis - Variable in class loci.poi.hssf.record.FontBasisRecord

field_2_zero - Variable in class loci.poi.hssf.record.formula.NamePtg

field_3_boundaryTop - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_3_build - Variable in class loci.poi.hssf.record.BOFRecord

field_3_cell_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_3_col_active_cell - Variable in class loci.poi.hssf.record.SelectionRecord

field_3_col_width - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_3_color3 - Variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

field_3_color_palette_index - Variable in class loci.poi.hssf.record.FontRecord

field_3_column - Variable in class loci.poi.hssf.record.formula.Ref3DPtg

field_3_displayMode - Variable in class loci.poi.hssf.record.TextRecord

field_3_dx1 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_3_dx2 - Variable in class loci.poi.ddf.EscherChildAnchorRecord

field_3_first_col - Variable in class loci.poi.hssf.record.DimensionsRecord

field_3_first_column - Variable in class loci.poi.hssf.record.formula.AreaPtg

field_3_first_column - Variable in class loci.poi.hssf.record.SelectionRecord.Reference

field_3_first_column - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_3_flags - Variable in class loci.poi.hssf.record.NoteRecord

field_3_formatFlags - Variable in class loci.poi.hssf.record.BarRecord

field_3_heightBasis - Variable in class loci.poi.hssf.record.FontBasisRecord

field_3_index_to_last_supbook_sheet - Variable in class loci.poi.hssf.record.ExternSheetSubRecord

field_3_labelPosition - Variable in class loci.poi.hssf.record.TickRecord

field_3_last_col - Variable in class loci.poi.hssf.record.RowRecord

field_3_last_row - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_3_last_row_add1 - Variable in class loci.poi.hssf.record.IndexRecord

field_3_left_col - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_3_length_name_text - Variable in class loci.poi.hssf.record.NameRecord

field_3_link2 - Variable in class loci.poi.hssf.record.ObjectLinkRecord

field_3_majorIncrement - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_3_majorUnitValue - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_3_numCategories - Variable in class loci.poi.hssf.record.SeriesRecord

field_3_numShapesSaved - Variable in class loci.poi.ddf.EscherDggRecord

field_3_option - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_3_options - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_3_outline_style_level - Variable in class loci.poi.hssf.record.StyleRecord

field_3_page_start - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_3_pattern - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_3_rcBounds_x1 - Variable in class loci.poi.ddf.EscherMetafileBlip

field_3_rcBounds_x1 - Variable in class loci.poi.ddf.EscherPictBlip

field_3_rcBounds_x2 - Variable in class loci.poi.ddf.EscherMetafileBlip

field_3_rcBounds_x2 - Variable in class loci.poi.ddf.EscherPictBlip

field_3_rcBounds_y1 - Variable in class loci.poi.ddf.EscherMetafileBlip

field_3_rcBounds_y1 - Variable in class loci.poi.ddf.EscherPictBlip

field_3_rcBounds_y2 - Variable in class loci.poi.ddf.EscherMetafileBlip

field_3_rcBounds_y2 - Variable in class loci.poi.ddf.EscherPictBlip

field_3_rectX2 - Variable in class loci.poi.ddf.EscherSpgrRecord

field_3_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_3_reserved - Variable in class loci.poi.hssf.record.formula.NameXPtg

field_3_reserved2 - Variable in class loci.poi.hssf.record.AxisRecord

field_3_reserved4 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_3_rks - Variable in class loci.poi.hssf.record.MulRKRecord

field_3_row_level_max - Variable in class loci.poi.hssf.record.GutsRecord

field_3_seriesNumber - Variable in class loci.poi.hssf.record.DataFormatRecord

field_3_sheetname_length - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_3_string - Variable in class loci.poi.hssf.record.formula.StringPtg

field_3_string - Variable in class loci.poi.hssf.record.StringRecord

field_3_string - Variable in class loci.poi.hssf.record.UnicodeString

field_3_string_options - Variable in class loci.poi.hssf.record.StyleRecord

field_3_strings - Variable in class loci.poi.hssf.record.SSTRecord

field_3_tickMarkFrequency - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

field_3_topRow - Variable in class loci.poi.hssf.record.PaneRecord

field_3_uid - Variable in class loci.poi.ddf.EscherBSERecord

field_3_undocumented - Variable in class loci.poi.hssf.record.SeriesTextRecord

field_3_unicode_flag - Variable in class loci.poi.hssf.record.FooterRecord

field_3_unicode_flag - Variable in class loci.poi.hssf.record.FormatRecord

field_3_unicode_flag - Variable in class loci.poi.hssf.record.HeaderRecord

field_3_unicode_len - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_3_unicode_len - Variable in class loci.poi.hssf.record.FormatRecord

field_3_username_length - Variable in class loci.poi.hssf.record.FileSharingRecord

field_3_weight - Variable in class loci.poi.hssf.record.LineFormatRecord

field_3_width - Variable in class loci.poi.hssf.record.ChartRecord

field_3_width - Variable in class loci.poi.hssf.record.WindowOneRecord

field_3_xf - Variable in class loci.poi.hssf.record.BlankRecord

field_3_xf - Variable in class loci.poi.hssf.record.FormulaRecord

field_3_xf - Variable in class loci.poi.hssf.record.NumberRecord

field_3_xf_index - Variable in class loci.poi.hssf.record.BoolErrRecord

field_3_xf_index - Variable in class loci.poi.hssf.record.LabelRecord

field_3_xf_index - Variable in class loci.poi.hssf.record.LabelSSTRecord

field_3_xf_index - Variable in class loci.poi.hssf.record.RKRecord

field_3_xfs - Variable in class loci.poi.hssf.record.MulBlankRecord

field_3_xSize - Variable in class loci.poi.hssf.record.LegendRecord

field_3_y - Variable in class loci.poi.hssf.record.AxisParentRecord

field_3_zero - Variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord

field_4_alignment_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_4_background - Variable in class loci.poi.hssf.record.TickRecord

field_4_bBoolErr - Variable in class loci.poi.hssf.record.BoolErrRecord

field_4_bold_weight - Variable in class loci.poi.hssf.record.FontRecord

field_4_boundaryLeft - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_4_col_level_max - Variable in class loci.poi.hssf.record.GutsRecord

field_4_color4 - Variable in class loci.poi.ddf.EscherSplitMenuColorsRecord

field_4_compressed_unicode_flag - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_4_drawingsSaved - Variable in class loci.poi.ddf.EscherDggRecord

field_4_dy2 - Variable in class loci.poi.ddf.EscherChildAnchorRecord

field_4_first_column - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_4_fit_width - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_4_footer - Variable in class loci.poi.hssf.record.FooterRecord

field_4_format - Variable in class loci.poi.hssf.record.LineFormatRecord

field_4_format_runs - Variable in class loci.poi.hssf.record.UnicodeString

field_4_formatFlags - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_4_formatFlags - Variable in class loci.poi.hssf.record.DataFormatRecord

field_4_formatstring - Variable in class loci.poi.hssf.record.FormatRecord

field_4_header - Variable in class loci.poi.hssf.record.HeaderRecord

field_4_header_color - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_4_height - Variable in class loci.poi.hssf.record.ChartRecord

field_4_height - Variable in class loci.poi.hssf.record.RowRecord

field_4_height - Variable in class loci.poi.hssf.record.WindowOneRecord

field_4_indexNumberFmtRecord - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_4_last_col - Variable in class loci.poi.hssf.record.DimensionsRecord

field_4_last_col - Variable in class loci.poi.hssf.record.MulBlankRecord

field_4_last_col - Variable in class loci.poi.hssf.record.MulRKRecord

field_4_last_column - Variable in class loci.poi.hssf.record.formula.AreaPtg

field_4_last_column - Variable in class loci.poi.hssf.record.SelectionRecord.Reference

field_4_last_column - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_4_leftColumn - Variable in class loci.poi.hssf.record.PaneRecord

field_4_length_name_definition - Variable in class loci.poi.hssf.record.NameRecord

field_4_majorUnit - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_4_minorIncrement - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_4_name - Variable in class loci.poi.hssf.record.StyleRecord

field_4_numValues - Variable in class loci.poi.hssf.record.SeriesRecord

field_4_options - Variable in class loci.poi.hssf.record.CategorySeriesAxisRecord

field_4_ptSize_h - Variable in class loci.poi.ddf.EscherMetafileBlip

field_4_ptSize_h - Variable in class loci.poi.ddf.EscherPictBlip

field_4_ptSize_w - Variable in class loci.poi.ddf.EscherMetafileBlip

field_4_ptSize_w - Variable in class loci.poi.ddf.EscherPictBlip

field_4_rectY2 - Variable in class loci.poi.ddf.EscherSpgrRecord

field_4_ref_active_cell - Variable in class loci.poi.hssf.record.SelectionRecord

field_4_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_4_reserved1 - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_4_reserved3 - Variable in class loci.poi.hssf.record.AxisRecord

field_4_reserved5 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_4_rgbColor - Variable in class loci.poi.hssf.record.TextRecord

field_4_rk_number - Variable in class loci.poi.hssf.record.RKRecord

field_4_row1 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_4_scale - Variable in class loci.poi.hssf.record.FontBasisRecord

field_4_shapeid - Variable in class loci.poi.hssf.record.NoteRecord

field_4_sst_index - Variable in class loci.poi.hssf.record.LabelSSTRecord

field_4_string_len - Variable in class loci.poi.hssf.record.LabelRecord

field_4_tag - Variable in class loci.poi.ddf.EscherBSERecord

field_4_text - Variable in class loci.poi.hssf.record.SeriesTextRecord

field_4_unicode_flag - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_4_unknown - Variable in class loci.poi.hssf.record.FileSharingRecord

field_4_value - Variable in class loci.poi.hssf.record.FormulaRecord

field_4_value - Variable in class loci.poi.hssf.record.NumberRecord

field_4_width - Variable in class loci.poi.hssf.record.AxisParentRecord

field_4_xf_index - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_4_year - Variable in class loci.poi.hssf.record.BOFRecord

field_4_ySize - Variable in class loci.poi.hssf.record.LegendRecord

field_4_zero - Variable in class loci.poi.hssf.record.IndexRecord

field_5_activePane - Variable in class loci.poi.hssf.record.PaneRecord

field_5_author - Variable in class loci.poi.hssf.record.NoteRecord

field_5_boundaryWidth - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_5_bubbleSeriesType - Variable in class loci.poi.hssf.record.SeriesRecord

field_5_categoryAxisCross - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_5_cbSave - Variable in class loci.poi.ddf.EscherMetafileBlip

field_5_cbSave - Variable in class loci.poi.ddf.EscherPictBlip

field_5_colourPaletteIndex - Variable in class loci.poi.hssf.record.LineFormatRecord

field_5_dbcells - Variable in class loci.poi.hssf.record.IndexRecord

field_5_dy1 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_5_ext_rst - Variable in class loci.poi.hssf.record.UnicodeString

field_5_fError - Variable in class loci.poi.hssf.record.BoolErrRecord

field_5_fileIdClusters - Variable in class loci.poi.ddf.EscherDggRecord

field_5_fit_height - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_5_forecolorIndex - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_5_formulaOfLink - Variable in class loci.poi.hssf.record.LinkedDataRecord

field_5_height - Variable in class loci.poi.hssf.record.AxisParentRecord

field_5_history - Variable in class loci.poi.hssf.record.BOFRecord

field_5_indention_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_5_index_to_sheet - Variable in class loci.poi.hssf.record.NameRecord

field_5_indexToFontTable - Variable in class loci.poi.hssf.record.FontBasisRecord

field_5_labelColorRgb - Variable in class loci.poi.hssf.record.TickRecord

field_5_last_column - Variable in class loci.poi.hssf.record.formula.Area3DPtg

field_5_minorUnitValue - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_5_num_refs - Variable in class loci.poi.hssf.record.SelectionRecord

field_5_ole_classname - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_5_optimize - Variable in class loci.poi.hssf.record.RowRecord

field_5_options - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_5_options - Variable in class loci.poi.hssf.record.FormulaRecord

field_5_options - Variable in class loci.poi.hssf.record.WindowOneRecord

field_5_page_break_zoom - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_5_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_5_reserved - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_5_reserved2 - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_5_reserved4 - Variable in class loci.poi.hssf.record.AxisRecord

field_5_reserved6 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_5_sheetname - Variable in class loci.poi.hssf.record.BoundSheetRecord

field_5_size - Variable in class loci.poi.ddf.EscherBSERecord

field_5_super_sub_script - Variable in class loci.poi.hssf.record.FontRecord

field_5_type - Variable in class loci.poi.hssf.record.LegendRecord

field_5_unicode_flag - Variable in class loci.poi.hssf.record.LabelRecord

field_5_username - Variable in class loci.poi.hssf.record.FileSharingRecord

field_5_x - Variable in class loci.poi.hssf.record.TextRecord

field_5_zero - Variable in class loci.poi.hssf.record.DimensionsRecord

field_6_backcolorIndex - Variable in class loci.poi.hssf.record.AreaFormatRecord

field_6_border_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_6_boundaryHeight - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_6_col2 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_6_equals_to_index_to_sheet - Variable in class loci.poi.hssf.record.NameRecord

field_6_expression_len - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_6_fCompression - Variable in class loci.poi.ddf.EscherMetafileBlip

field_6_fCompression - Variable in class loci.poi.ddf.EscherPictBlip

field_6_minorUnit - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_6_normal_zoom - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_6_numBubbleValues - Variable in class loci.poi.hssf.record.SeriesRecord

field_6_options - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_6_options - Variable in class loci.poi.hssf.record.ValueRangeRecord

field_6_ref - Variable in class loci.poi.ddf.EscherBSERecord

field_6_refs - Variable in class loci.poi.hssf.record.SelectionRecord

field_6_reserved - Variable in class loci.poi.hssf.record.ColumnInfoRecord

field_6_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_6_reserved - Variable in class loci.poi.hssf.record.RowRecord

field_6_reserved3 - Variable in class loci.poi.hssf.record.CommonObjectDataSubRecord

field_6_rversion - Variable in class loci.poi.hssf.record.BOFRecord

field_6_selected_tab - Variable in class loci.poi.hssf.record.WindowOneRecord

field_6_spacing - Variable in class loci.poi.hssf.record.LegendRecord

field_6_stream_id - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

field_6_textLength - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_6_underline - Variable in class loci.poi.hssf.record.FontRecord

field_6_value - Variable in class loci.poi.hssf.record.LabelRecord

field_6_y - Variable in class loci.poi.hssf.record.TextRecord

field_6_zero - Variable in class loci.poi.hssf.record.FormulaRecord

field_6_zero1 - Variable in class loci.poi.hssf.record.TickRecord

field_7_baseUnit - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_7_displayed_tab - Variable in class loci.poi.hssf.record.WindowOneRecord

field_7_dx2 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_7_expression_len - Variable in class loci.poi.hssf.record.FormulaRecord

field_7_family - Variable in class loci.poi.hssf.record.FontRecord

field_7_fFilter - Variable in class loci.poi.ddf.EscherMetafileBlip

field_7_fFilter - Variable in class loci.poi.ddf.EscherPictBlip

field_7_formattingRunLength - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_7_hresolution - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_7_length_custom_menu - Variable in class loci.poi.hssf.record.NameRecord

field_7_offset - Variable in class loci.poi.ddf.EscherBSERecord

field_7_option_flags - Variable in class loci.poi.hssf.record.RowRecord

field_7_options - Variable in class loci.poi.hssf.record.LegendRecord

field_7_palette_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_7_parsed_expr - Variable in class loci.poi.hssf.record.SharedFormulaRecord

field_7_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg

field_7_reserved - Variable in class loci.poi.hssf.record.WindowTwoRecord

field_7_width - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_7_width - Variable in class loci.poi.hssf.record.TextRecord

field_7_zero2 - Variable in class loci.poi.hssf.record.TickRecord

field_8_adtl_palette_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_8_charset - Variable in class loci.poi.hssf.record.FontRecord

field_8_crossingPoint - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_8_height - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_8_height - Variable in class loci.poi.hssf.record.TextRecord

field_8_length_description_text - Variable in class loci.poi.hssf.record.NameRecord

field_8_num_selected_tabs - Variable in class loci.poi.hssf.record.WindowOneRecord

field_8_parsed_expr - Variable in class loci.poi.hssf.record.FormulaRecord

field_8_reserved7 - Variable in class loci.poi.hssf.record.TextObjectBaseRecord

field_8_row2 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_8_usage - Variable in class loci.poi.ddf.EscherBSERecord

field_8_vresolution - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_8_xf_index - Variable in class loci.poi.hssf.record.RowRecord

field_8_zero3 - Variable in class loci.poi.hssf.record.TickRecord

field_9_cacheOfSavedSize - Variable in class loci.poi.ddf.EscherBlipWMFRecord

field_9_dy2 - Variable in class loci.poi.ddf.EscherClientAnchorRecord

field_9_fill_palette_options - Variable in class loci.poi.hssf.record.ExtendedFormatRecord

field_9_headermargin - Variable in class loci.poi.hssf.record.PrintSetupRecord

field_9_length_help_topic_text - Variable in class loci.poi.hssf.record.NameRecord

field_9_name - Variable in class loci.poi.ddf.EscherBSERecord

field_9_options - Variable in class loci.poi.hssf.record.AxisOptionsRecord

field_9_options1 - Variable in class loci.poi.hssf.record.TextRecord

field_9_tab_width_ratio - Variable in class loci.poi.hssf.record.WindowOneRecord

field_9_zero - Variable in class loci.poi.hssf.record.FontRecord

field_9_zero4 - Variable in class loci.poi.hssf.record.TickRecord

FIELD_A_ID - Static variable in class mdbtools.dbengine.Tests

FIELD_A_S - Static variable in class mdbtools.dbengine.Tests

FIELD_AUX_FLAGS - Static variable in class loci.formats.in.IM3Reader

FIELD_BAND_INDEX - Static variable in class loci.formats.in.IM3Reader

FIELD_BANDS - Static variable in class loci.formats.in.IM3Reader

FIELD_CARS_ID - Static variable in class mdbtools.dbengine.Tests

FIELD_CARS_MAKE - Static variable in class mdbtools.dbengine.Tests

FIELD_CARS_MODEL - Static variable in class mdbtools.dbengine.Tests

FIELD_CARS_OWNER - Static variable in class mdbtools.dbengine.Tests

FIELD_CLASS_ID - Static variable in class loci.formats.in.IM3Reader

FIELD_DATA - Static variable in class loci.formats.in.IM3Reader

FIELD_DATA_SET - Static variable in class loci.formats.in.IM3Reader

FIELD_EXPOSURE - Static variable in class loci.formats.in.IM3Reader

FIELD_FILE_VERSION - Static variable in class loci.formats.in.IM3Reader

FIELD_FILTER_PAIR - Static variable in class loci.formats.in.IM3Reader

FIELD_FIXED_FILTER - Static variable in class loci.formats.in.IM3Reader

FIELD_HOMOGENEOUS - Static variable in class loci.formats.in.IM3Reader

FIELD_INDEX - Static variable in class loci.formats.in.ND2Handler

FIELD_LOCATION_CITY - Static variable in class mdbtools.dbengine.Tests

FIELD_LOCATION_ID - Static variable in class mdbtools.dbengine.Tests

FIELD_LOCATION_STATE - Static variable in class mdbtools.dbengine.Tests

FIELD_MAGNITUDES - Static variable in class loci.formats.in.IM3Reader

FIELD_MANUFACTURER - Static variable in class loci.formats.in.IM3Reader

FIELD_MILLIMETERS_PER_PIXEL - Static variable in class loci.formats.in.IM3Reader

FIELD_NAME - Static variable in class loci.formats.in.IM3Reader

FIELD_NUANCE_FLAGS - Static variable in class loci.formats.in.IM3Reader

FIELD_OBJECTIVE - Static variable in class loci.formats.in.IM3Reader

FIELD_PART_NUMBER - Static variable in class loci.formats.in.IM3Reader

FIELD_PERSON_ID - Static variable in class mdbtools.dbengine.Tests

FIELD_PERSON_LOCATION - Static variable in class mdbtools.dbengine.Tests

FIELD_PERSON_NAME - Static variable in class mdbtools.dbengine.Tests

field_pictureData - Variable in class loci.poi.ddf.EscherBlipRecord

FIELD_PROTOCOL - Static variable in class loci.formats.in.IM3Reader

FIELD_PROXY_PARENT_FILE_NAME - Static variable in class loci.formats.in.IM3Reader

FIELD_SAMPLE_ID - Static variable in class loci.formats.in.IM3Reader

FIELD_SHAPE - Static variable in class loci.formats.in.IM3Reader

FIELD_SOURCE_FILE_NAME - Static variable in class loci.formats.in.IM3Reader

FIELD_SPECTRA - Static variable in class loci.formats.in.IM3Reader

FIELD_SPECTRAL_BASIS_INFO - Static variable in class loci.formats.in.IM3Reader

FIELD_SPECTRAL_LIBRARY - Static variable in class loci.formats.in.IM3Reader

FIELD_SPECTRUM - Static variable in class loci.formats.in.IM3Reader

FIELD_THUMBNAIL - Static variable in class loci.formats.in.IM3Reader

FIELD_TIMESTAMP - Static variable in class loci.formats.in.IM3Reader

FIELD_TYPE - Static variable in class loci.formats.in.CellSensReader

FIELD_TYPE_ID - Static variable in class loci.formats.in.IM3Reader

FIELD_USER_COMMENTS - Static variable in class loci.formats.in.IM3Reader

FIELD_VALUES - Static variable in class loci.formats.in.IM3Reader

FIELD_WAVELENGTH - Static variable in class loci.formats.in.IM3Reader

FIELD_WAVELENGTHS - Static variable in class loci.formats.in.IM3Reader

fieldCol - Variable in class loci.formats.in.MetamorphTiffReader.Well

fieldCols - Variable in class loci.formats.in.BDReader

fieldColumnCount - Variable in class loci.formats.in.MetamorphTiffReader

fieldColumns - Variable in class loci.formats.in.ScanrReader

fieldCount - Variable in class loci.formats.in.CellWorxReader

fieldCount - Variable in class loci.formats.in.FlexReader

fieldCount - Variable in class loci.formats.in.InCellReader

fieldIndex - Variable in class loci.formats.in.FluoviewReader

fieldIndex - Variable in class loci.formats.in.NativeND2Reader

fieldIndex - Variable in class ome.xml.model.Plate

fieldMap - Variable in class loci.formats.in.CellWorxReader

fieldOffsets - Variable in class loci.formats.in.FluoviewReader

fieldPositionX - Variable in class loci.formats.in.ScanrReader

fieldPositionY - Variable in class loci.formats.in.ScanrReader

fieldPosX - Variable in class loci.formats.in.LIFReader

fieldPosY - Variable in class loci.formats.in.LIFReader

fieldRow - Variable in class loci.formats.in.MetamorphTiffReader.Well

fieldRowCount - Variable in class loci.formats.in.MetamorphTiffReader

fieldRows - Variable in class loci.formats.in.BDReader

fieldRows - Variable in class loci.formats.in.ScanrReader

fields - Variable in class loci.formats.in.CellVoyagerReader.AreaInfo

FIELDS - Static variable in class ome.specification.XMLMockObjects

The default number of fields for a well.

fifoTyp - Variable in class loci.formats.in.SDTInfo

Filament - Class in ome.xml.model

Filament() - Constructor for class ome.xml.model.Filament

Default constructor.

Filament(Element, OMEModel) - Constructor for class ome.xml.model.Filament

Constructs Filament recursively from an XML DOM tree.

Filament(Filament) - Constructor for class ome.xml.model.Filament

Copy constructor.

FILAMENT_TYPE - Static variable in class ome.specification.XMLMockObjects

The default type of a filament.

FilamentType - Enum in ome.xml.model.enums

FilamentType(String) - Constructor for enum ome.xml.model.enums.FilamentType

FilamentTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FilamentType.

FilamentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

fildaPoints - Variable in class loci.formats.in.SDTInfo

No of FILDA values.

fildaTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for FILDA histogram.

file - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

The name of the file from which to read the codestream and to write the JP2 file

file - Variable in class jj2000.j2k.util.CodestreamManipulator

The name of the outfile

file - Variable in class loci.common.Location

file - Variable in class loci.common.NIOInputStream

The file.

file - Variable in class loci.common.RandomAccessInputStream

The file name.

file - Variable in class loci.common.StreamHandle

Name of the open stream.

file - Variable in class loci.formats.in.FlexReader.FlexFile

file - Variable in class loci.formats.tools.EditTiffG

file - Variable in class loci.poi.hssf.dev.EFBiffViewer

file - Variable in class loci.poi.hssf.dev.FormulaViewer

file() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current file name

file() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current file name

File - Class in mdbtools.jdbc2

File(String) - Constructor for class mdbtools.jdbc2.File

file - Variable in class mdbtools.jdbc2.File

file - Class in mdbtools.libmdb

file() - Constructor for class mdbtools.libmdb.file

File - Class in ome.jxr.constants

Constants found in the file header structure.

File() - Constructor for class ome.jxr.constants.File

FILE_LENGTH - Static variable in class loci.formats.in.CanonRawReader

FILE_MAGIC_STRING - Static variable in class loci.formats.in.OBFReader

FILE_SOURCE - Static variable in class loci.formats.tiff.IFD

FILE_SOURCE_DSC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FileSource" tag.

FILE_TYPE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

FILE_VERSION - Static variable in class loci.formats.in.OBFReader

FileAnnotation - Class in ome.xml.model

FileAnnotation() - Constructor for class ome.xml.model.FileAnnotation

Default constructor.

FileAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.FileAnnotation

Constructs FileAnnotation recursively from an XML DOM tree.

FileAnnotation(FileAnnotation) - Constructor for class ome.xml.model.FileAnnotation

Copy constructor.

fileAnnotations - Variable in class ome.xml.model.StructuredAnnotations

FileBitstreamReaderAgent - Class in jj2000.j2k.codestream.reader

This class reads the bit stream (with the help of HeaderDecoder for tile headers and PktDecoder for packets header and body) and retrives location of all code-block's codewords.

FileBitstreamReaderAgent(HeaderDecoder, RandomAccessIO, DecoderSpecs, J2KImageReadParamJava, boolean, HeaderInfo) - Constructor for class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads all tiles headers and keep offset of their first packet.

fileBox - Variable in class loci.formats.tools.EditTiffG

FileChannelImageInputStream - Class in com.sun.media.imageio.stream

A class which implements ImageInputStream using a FileChannel as the eventual data source.

FileChannelImageInputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageInputStream

Constructs a FileChannelImageInputStream from a FileChannel.

FileChannelImageOutputStream - Class in com.sun.media.imageio.stream

A class which implements ImageOutputStream using a FileChannel as the eventual data destination.

FileChannelImageOutputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageOutputStream

Constructs a FileChannelImageOutputStream from a FileChannel.

FileCodestreamWriter - Class in jj2000.j2k.codestream.writer

This class implements a CodestreamWriter for Java streams.

FileCodestreamWriter(File, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Opens the file 'file' for writing the bit stream, using the 'he' header encoder.

FileCodestreamWriter(String, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Opens the file named 'fname' for writing the bit stream, using the 'he' header encoder.

FileCodestreamWriter(OutputStream, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Uses the output stream 'os' for writing the bit stream, using the 'he' header encoder.

FileFormatBoxes - Interface in jj2000.j2k.fileformat

This class contains all the markers used in the JPEG 2000 Part I file format

FileFormatReader - Class in jj2000.j2k.fileformat.reader

This class reads the file format wrapper that may or may not exist around a valid JPEG 2000 codestream.

FileFormatReader(RandomAccessIO, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.reader.FileFormatReader

The constructor of the FileFormatReader

FileFormatWriter - Class in jj2000.j2k.fileformat.writer

This class writes the file format wrapper that may or may not exist around a valid JPEG 2000 codestream.

FileFormatWriter(File, ImageOutputStream, int, int, int, int[], int, ColorModel, SampleModel, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.writer.FileFormatWriter

The constructor of the FileFormatWriter.

fileGroupOption(String) - Method in class loci.formats.FormatReader

fileGroupOption(String) - Method in interface loci.formats.IFormatReader

Returns an int indicating that we cannot, must, or might group the files in a given dataset.

fileGroupOption(String) - Method in class loci.formats.ImageReader

fileGroupOption(String) - Method in class loci.formats.in.AFIReader

fileGroupOption(String) - Method in class loci.formats.in.AnalyzeReader

fileGroupOption(String) - Method in class loci.formats.in.APLReader

fileGroupOption(String) - Method in class loci.formats.in.BDReader

fileGroupOption(String) - Method in class loci.formats.in.BioRadReader

fileGroupOption(String) - Method in class loci.formats.in.BrukerReader

fileGroupOption(String) - Method in class loci.formats.in.CellomicsReader

fileGroupOption(String) - Method in class loci.formats.in.CellSensReader

fileGroupOption(String) - Method in class loci.formats.in.CellVoyagerReader

fileGroupOption(String) - Method in class loci.formats.in.DicomReader

fileGroupOption(String) - Method in class loci.formats.in.FlexReader

fileGroupOption(String) - Method in class loci.formats.in.FujiReader

fileGroupOption(String) - Method in class loci.formats.in.FV1000Reader

fileGroupOption(String) - Method in class loci.formats.in.HitachiReader

fileGroupOption(String) - Method in class loci.formats.in.ICSReader

fileGroupOption(String) - Method in class loci.formats.in.ImagicReader

fileGroupOption(String) - Method in class loci.formats.in.InCellReader

fileGroupOption(String) - Method in class loci.formats.in.L2DReader

fileGroupOption(String) - Method in class loci.formats.in.LeicaReader

fileGroupOption(String) - Method in class loci.formats.in.MetamorphReader

fileGroupOption(String) - Method in class loci.formats.in.MIASReader

fileGroupOption(String) - Method in class loci.formats.in.MicromanagerReader

fileGroupOption(String) - Method in class loci.formats.in.NDPIReader

fileGroupOption(String) - Method in class loci.formats.in.NDPISReader

fileGroupOption(String) - Method in class loci.formats.in.NiftiReader

fileGroupOption(String) - Method in class loci.formats.in.NRRDReader

fileGroupOption(String) - Method in class loci.formats.in.OMETiffReader

fileGroupOption(String) - Method in class loci.formats.in.OperettaReader

fileGroupOption(String) - Method in class loci.formats.in.PerkinElmerReader

fileGroupOption(String) - Method in class loci.formats.in.PrairieReader

fileGroupOption(String) - Method in class loci.formats.in.ScanrReader

fileGroupOption(String) - Method in class loci.formats.in.ScreenReader

fileGroupOption(String) - Method in class loci.formats.in.SVSReader

fileGroupOption(String) - Method in class loci.formats.in.TCSReader

fileGroupOption(String) - Method in class loci.formats.in.TillVisionReader

fileGroupOption(String) - Method in class loci.formats.in.TrestleReader

fileGroupOption(String) - Method in class loci.formats.in.VisitechReader

fileGroupOption(String) - Method in class loci.formats.in.ZeissLSMReader

fileGroupOption(String) - Method in class loci.formats.in.ZeissTIFFReader

fileGroupOption(String) - Method in class loci.formats.ReaderWrapper

fileGroupOption(String, String[]) - Method in class loci.plugins.macro.LociFunctions

fileGUID - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

FileHandle - Class in loci.common

A wrapper for RandomAccessFile that implements the IRandomAccess interface.

FileHandle(File, String) - Constructor for class loci.common.FileHandle

Creates a random access file stream to read from, and optionally to write to, the file specified by the File argument.

FileHandle(String, String) - Constructor for class loci.common.FileHandle

Creates a random access file stream to read from, and optionally to write to, a file with the specified name.

FileHandleTest - Class in loci.tests.testng

Checks that no file handles are open after closing a reader.

FileHandleTest() - Constructor for class loci.tests.testng.FileHandleTest

FileInfo - Class in loci.formats

Encompasses basic metadata about a file.

FileInfo() - Constructor for class loci.formats.FileInfo

FILEINFO_STRING - Static variable in class loci.formats.in.KodakReader

fileLength - Variable in class loci.formats.in.LeicaReader

Length of each file name.

fileList - Variable in class loci.formats.in.DicomReader

fileListings - Static variable in class loci.common.Location

fileMap - Variable in class loci.formats.in.CellSensReader

fileName - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

The name of the current file

filename - Variable in class loci.common.NIOInputStream

The file name.

filename - Variable in class loci.formats.FileInfo

Absolute path to this file.

filename - Variable in class loci.formats.gui.ImageViewer

filename - Variable in class loci.formats.in.InCellReader.Image

filename - Variable in class loci.formats.in.MIASReader.AnalysisFile

filename - Variable in class loci.formats.in.OperettaReader.Plane

filename - Variable in class loci.formats.in.PrairieMetadata.PFile

filename attribute of this <File>.

filename - Variable in class loci.formats.in.ZeissCZIReader.Segment

filename - Variable in class loci.formats.in.ZeissTIFFReader.Plane

filename - Variable in class loci.formats.tiff.TiffSaver

Output filename.

filename - Variable in class loci.poi.hssf.dev.BiffViewer

filename - Variable in class loci.poi.hssf.dev.HSSF

filename - Variable in class loci.tests.testng.OpenBytesPerformanceTest

filename - Variable in class mdbtools.libmdb.MdbFile

filename - Variable in class ome.jxr.JXRReader

fileName - Variable in class ome.xml.model.BinaryFile

fileName - Variable in class ome.xml.model.UUID

FILENAME_FORMAT - Static variable in class loci.common.DateTools

Human readable timestamp filename string

FILENAME_FORMATTER - Static variable in class loci.common.DateTools

Human readable timestamp filename formatter.

fileNameMap - Variable in class loci.formats.in.MicromanagerReader.Position

filenames - Variable in class loci.formats.in.FV1000Reader

fileParser - Variable in class ome.jxr.JXRReader

FileParser - Class in ome.jxr.parser

Parses the first bytes of the image file and validates the extracted values for conformance with the file format specification.

FileParser(RandomAccessInputStream) - Constructor for class ome.jxr.parser.FileParser

filePart - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

filePart - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

filePart - Variable in class loci.formats.in.ZeissCZIReader.FileHeader

FilePassRecord - Class in loci.poi.hssf.record

Title: File Pass Record

FilePassRecord() - Constructor for class loci.poi.hssf.record.FilePassRecord

FilePassRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FilePassRecord

Constructs a FILEPASS record and sets its fields appropriately.

filePath - Variable in class loci.formats.services.POIServiceImpl

FilePattern - Class in loci.formats

FilePattern is a collection of methods for handling file patterns, a way of succinctly representing a collection of files meant to be part of the same data series.

FilePattern(Location) - Constructor for class loci.formats.FilePattern

Creates a pattern object using the given file as a template.

FilePattern(String, String) - Constructor for class loci.formats.FilePattern

Creates a pattern object using the given filename and directory path as a template.

FilePattern(String) - Constructor for class loci.formats.FilePattern

Creates a pattern object for files with the given pattern string.

FilePatternBlock - Class in loci.formats

FilePatternBlock represents a single block in a FilePattern.

FilePatternBlock(String) - Constructor for class loci.formats.FilePatternBlock

FilePatternDialog - Class in loci.plugins.in

Bio-Formats Importer file pattern dialog box.

FilePatternDialog(ImportProcess) - Constructor for class loci.plugins.in.FilePatternDialog

Creates a file pattern dialog for the Bio-Formats Importer.

FilePatternReader - Class in loci.formats.in

FilePatternReader() - Constructor for class loci.formats.in.FilePatternReader

Constructs a new pattern reader.

filePosition - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry

filePosition - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry

fileReader - Variable in class loci.formats.gui.ImageViewer

Reader for files on disk.

files - Variable in class loci.formats.FilePattern

File listing for this file pattern.

files - Variable in class loci.formats.FileStitcher.ExternalSeries

files - Variable in class loci.formats.in.CellomicsReader

files - Variable in class loci.formats.in.HamamatsuVMSReader

files - Variable in class loci.formats.in.ImprovisionTiffReader

files - Variable in class loci.formats.in.LeicaReader

Array of image file names.

files - Variable in class loci.formats.in.MetamorphTiffReader

files - Variable in class loci.formats.in.PerkinElmerReader

List of files to open.

files - Variable in class loci.formats.in.PrairieMetadata.Frame

<File> elements beneath this <Frame>, keyed on each file's channel.

files - Variable in class loci.formats.in.SlidebookTiffReader

files - Variable in class loci.formats.in.TrestleReader

files - Variable in class loci.formats.in.VarianFDFReader

files - Variable in class loci.formats.in.VisitechReader

Files in this dataset.

files - Variable in class loci.formats.in.ZeissZVIReader

files - Variable in class loci.formats.services.POIServiceImpl

fileSave - Variable in class loci.formats.gui.ImageViewer

fileShare - Variable in class loci.poi.hssf.model.Workbook

FileSharingRecord - Class in loci.poi.hssf.record

Title: FileSharing

FileSharingRecord() - Constructor for class loci.poi.hssf.record.FileSharingRecord

FileSharingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FileSharingRecord

Constructs a FileSharing record and sets its fields appropriately.

fileSize - Variable in class ome.jxr.parser.FileParser

fileSizeInBytes - Variable in class ome.jxr.ifd.IFDMetadata

fileSizes - Variable in class loci.formats.services.POIServiceImpl

FileStitcher - Class in loci.formats

Logic to stitch together files with similar names.

FileStitcher() - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher around a new image reader.

FileStitcher(boolean) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher around a new image reader.

FileStitcher(IFormatReader) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher with the given reader.

FileStitcher(IFormatReader, boolean) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher with the given reader.

fileStitcher - Variable in class loci.plugins.in.ImportProcess

FileStitcher.ExternalSeries - Class in loci.formats

FileStitcher.ExternalSeries(FilePattern) - Constructor for class loci.formats.FileStitcher.ExternalSeries

fileSystem - Variable in class loci.formats.services.POIServiceImpl

filesystem - Variable in class loci.poi.POIDocument

The open POIFS FileSystem that contains our document

filetimeToDate(int, int) - Static method in class loci.poi.hpsf.Util

Converts a Windows FILETIME into a Date.

filetimeToDate(long) - Static method in class loci.poi.hpsf.Util

Converts a Windows FILETIME into a Date.

FileTypeBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a File Type Box of JPEG JP2 file format.

FileTypeBox(int, int, int[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from the provided brand, minor version and compatibility list.

FileTypeBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from the provided byte array.

FileTypeBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from org.w3c.dom.Node.

fileView - Variable in class loci.formats.gui.ImageViewer

fileWriter - Variable in class loci.formats.gui.ImageViewer

Writer for files on disk.

fill(Location) - Method in class loci.common.CaseInsensitiveLocation.Cache

Fill the cache with the content for the specified directory.

fill() - Method in class loci.plugins.util.RecordedImageProcessor

fill(ImageProcessor) - Method in class loci.plugins.util.RecordedImageProcessor

FILL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

fill(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fill(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fill(List, int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

fill out a List of SmallDocumentBlocks so that it fully occupies a set of big blocks

fill3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

FILL__ANGLE - Static variable in class loci.poi.ddf.EscherProperties

FILL__BACKOPACITY - Static variable in class loci.poi.ddf.EscherProperties

FILL__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties

FILL__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties

FILL__CRMOD - Static variable in class loci.poi.ddf.EscherProperties

FILL__DZTYPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLBACKCOLOR - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLCOLOR - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLED - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLOPACITY - Static variable in class loci.poi.ddf.EscherProperties

FILL__FILLTYPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__FOCUS - Static variable in class loci.poi.ddf.EscherProperties

FILL__HEIGHT - Static variable in class loci.poi.ddf.EscherProperties

FILL__HITTESTFILL - Static variable in class loci.poi.ddf.EscherProperties

FILL__NOFILLHITTEST - Static variable in class loci.poi.ddf.EscherProperties

FILL__ORIGINX - Static variable in class loci.poi.ddf.EscherProperties

FILL__ORIGINY - Static variable in class loci.poi.ddf.EscherProperties

FILL__PATTERNTEXTURE - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTLEFT - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTRIGHT - Static variable in class loci.poi.ddf.EscherProperties

FILL__RECTTOP - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHADECOLORS - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHADEPRESET - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHADETYPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHAPE - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHAPEORIGINX - Static variable in class loci.poi.ddf.EscherProperties

FILL__SHAPEORIGINY - Static variable in class loci.poi.ddf.EscherProperties

FILL__TOBOTTOM - Static variable in class loci.poi.ddf.EscherProperties

FILL__TOLEFT - Static variable in class loci.poi.ddf.EscherProperties

FILL__TORIGHT - Static variable in class loci.poi.ddf.EscherProperties

FILL__TOTOP - Static variable in class loci.poi.ddf.EscherProperties

FILL__USERECT - Static variable in class loci.poi.ddf.EscherProperties

FILL__WIDTH - Static variable in class loci.poi.ddf.EscherProperties

FILL_ORDER - Static variable in class loci.formats.tiff.IFD

FILL_ORDER_LEFT_TO_RIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "FillOrder" tag.

FILL_ORDER_RIGHT_TO_LEFT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "FillOrder" tag.

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fillArray(int, int[], int) - Method in class loci.poi.util.IntList

fillBasedOnBands(int, boolean, short[], short[], short[]) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Fills the channel definitions into the arrays based on the number of components and isPremultiplied.

fillBits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

EOL padding flag: 1 if fill bits have been added before an EOL such that the EOL ends on a byte boundary, 0 otherwise.

fillColor - Variable in class loci.poi.hssf.usermodel.HSSFShape

fillColor - Variable in class ome.xml.model.Shape

fillColour - Variable in class loci.formats.in.BaseZeissReader.Shape

filled - Variable in class loci.formats.ChannelFiller

Whether to fill in the indices.

fillExposureTime(MetadataStore) - Method in class loci.formats.in.FakeReader

fillField(RecordInputStream) - Method in interface loci.poi.hssf.record.CustomField

Populates this fields data from the byte array passed in.

fillField(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataFormulaField

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBitmapBlip

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipWMFRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBSERecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherChildAnchorRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientAnchorRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientDataRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherContainerRecord

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDggRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDgRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherMetafileBlip

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherOptRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherPictBlip

This method deserializes the record from a byte array.

fillFields(byte[], EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord

Delegates to fillFields(byte[], int, EscherRecordFactory)

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord

The contract of this method is to deserialize an escher record including it's children.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpgrRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherTextboxRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.UnknownEscherRecord

This method deserializes the record from a byte array.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisLineFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisOptionsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisParentRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisUsedRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BackupRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BarRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BeginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BlankRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BOFRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BookBoolRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoolErrRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BottomMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoundSheetRecord

UTF8: sid + len + bof + flags + len(str) + unicode + str 2 + 2 + 4 + 2 + 1 + 1 + len(str) UNICODE: sid + len + bof + flags + len(str) + unicode + str 2 + 2 + 4 + 2 + 1 + 1 + 2 * len(str)

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcCountRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcModeRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CodepageRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ColumnInfoRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ContinueRecord

Fill the fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CountryRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DataFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DateWindow1904Record

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DBCellRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultColWidthRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DeltaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DimensionsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DrawingRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DSFRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EOFRecord

fillFields(byte[], short, int) - Method in class loci.poi.hssf.record.EscherAggregate

Unused since this is an aggregate record.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtendedFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FilePassRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FileSharingRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FnGroupCountRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontBasisRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FooterRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormulaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FrameRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GridsetRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GutsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HCenterRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HeaderRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HideObjRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceEndRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceHdrRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IterationRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelSSTRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LeftMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LegendRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LineFormatRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MergeCellsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MMSRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulBlankRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulRKRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NameRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteRecord

Read the record data from the supplied RecordInputStream

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Read the record data from the supplied RecordInputStream

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectLinkRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PageBreakRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaletteRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaneRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRev4Record

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotAreaRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotGrowthRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrecisionRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintGridlinesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintHeadersRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintSetupRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectionRev4Record

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RecalcIdRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.Record

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefModeRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefreshAllRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RightMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RKRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RowRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SaveRecalcRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ScenarioProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SCLRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SelectionRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesIndexRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesLabelsRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesListRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesTextRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SharedFormulaRecord

Shared formulas are to treated like unknown records, and as a result d

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SheetPropertiesRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SSTRecord

Fill the fields from the data

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StringRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StyleRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SupBookRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TabIdRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectBaseRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TickRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TopMarginRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnicodeString

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnitsRecord

fillFields(byte[], short) - Method in class loci.poi.hssf.record.UnknownRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnknownRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UseSelFSRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ValueRangeRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.VCenterRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowOneRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowTwoRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteAccessRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteProtectRecord

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WSBoolRecord

fillInData() - Method in class loci.formats.in.ZeissCZIReader.Attachment

fillInData() - Method in class loci.formats.in.ZeissCZIReader.AttachmentDirectory

fillInData() - Method in class loci.formats.in.ZeissCZIReader.Directory

fillInData() - Method in class loci.formats.in.ZeissCZIReader.FileHeader

fillInData() - Method in class loci.formats.in.ZeissCZIReader.Metadata

fillInData() - Method in class loci.formats.in.ZeissCZIReader.Segment

fillInData() - Method in class loci.formats.in.ZeissCZIReader.SubBlock

fillInIFD(IFD) - Method in class loci.formats.tiff.TiffParser

Fill in IFD entries that are stored at an arbitrary offset.

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader

fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

fillMetadataPass4(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader

fillMetadataPass6(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass7(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Store basic dimensions in model

fillOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

The logical order of bits within a byte.

fillOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor

fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fillPhysicalSizes(MetadataStore) - Method in class loci.formats.in.FakeReader

fillPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor

fillPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

Fills a (closed) polygon, as defined by a pair of arrays, which hold the x and y coordinates.

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

Fills a (closed) polygon, as defined by a pair of arrays, which hold the x and y coordinates.

fillPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Retrives precincts and code-blocks coordinates in the given resolution, level and component.

fillPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Retrives precincts and code-blocks coordinates in the given resolution, component and tile.

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

FillRule - Enum in ome.xml.model.enums

FillRule(String) - Constructor for enum ome.xml.model.enums.FillRule

fillRule - Variable in class ome.xml.model.Shape

FillRuleEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FillRule.

FillRuleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FillRuleEnumHandler

fillStyle - Variable in class loci.formats.in.BaseZeissReader.Shape

fillval - Variable in class loci.poi.util.IntList

filter - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Specifies which filters to use for the specified tile-components.

filter(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor.JPEGSPIFilter

filter - Variable in class loci.formats.in.ZeissLSMReader.BeamSplitter

filter - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

filter(int) - Method in class loci.plugins.util.RecordedImageProcessor

filter - Variable in class ome.xml.meta.FilterMetadata

Is filtering enabled?

Filter - Class in ome.xml.model

Filter() - Constructor for class ome.xml.model.Filter

Default constructor.

Filter(Element, OMEModel) - Constructor for class ome.xml.model.Filter

Constructs Filter recursively from an XML DOM tree.

Filter(Filter) - Constructor for class ome.xml.model.Filter

Copy constructor.

filter$(String) - Method in class loci.poi.hssf.util.RangeAddress

FILTER_53 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The filter for lossless compression.

FILTER_97 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The filter for lossy compression.

FILTER_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "component default" specified filters

FILTER_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "main default" specified filters

FILTER_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "tile and component specific" specified filters

FILTER_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "tile specific default" specified filters

FILTER_TYPE - Static variable in class ome.specification.XMLMockObjects

The default objective's immersion.

FilterData - Class in mdbtools.dbengine.tasks

filter a given result set by a given constraint

FilterData(Task, Object, int[]) - Constructor for class mdbtools.dbengine.tasks.FilterData

filterLinks - Variable in class ome.xml.model.Annotation

filterMap - Variable in class loci.formats.in.FlexReader

filterMetadata - Variable in class loci.formats.FormatReader

Whether or not to filter out invalid metadata.

FilterMetadata - Class in loci.formats.meta

FilterMetadata(MetadataStore, boolean) - Constructor for class loci.formats.meta.FilterMetadata

FilterMetadata - Class in ome.xml.meta

An implementation of MetadataStore that removes unprintable characters from metadata values before storing them in a delegate MetadataStore.

FilterMetadata(MetadataStore, boolean) - Constructor for class ome.xml.meta.FilterMetadata

Creates a new instance.

filterModels - Variable in class loci.formats.in.LIFReader

filterModels - Variable in class loci.formats.in.NikonTiffReader

FilterRef - Class in ome.xml.model

FilterRef() - Constructor for class ome.xml.model.FilterRef

Default constructor.

FilterRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterRef

Constructs FilterRef recursively from an XML DOM tree.

FilterRef(FilterRef) - Constructor for class ome.xml.model.FilterRef

Copy constructor.

filterRefPopulated - Variable in class loci.formats.in.LeicaReader

filters - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Specifies which filters to use for the specified tile-components.

filters - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull

Wavelet filters for all components and tiles

filters - Variable in class ome.xml.model.Instrument

filterSet - Variable in class loci.formats.in.FlexReader.FlexHandler

FILTERSET - Static variable in class loci.formats.in.LeicaReader

filterSet - Variable in class loci.formats.in.ZeissLSMReader.BeamSplitter

filterSet - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

filterSet - Variable in class ome.xml.model.Channel

FilterSet - Class in ome.xml.model

FilterSet() - Constructor for class ome.xml.model.FilterSet

Default constructor.

FilterSet(Element, OMEModel) - Constructor for class ome.xml.model.FilterSet

Constructs FilterSet recursively from an XML DOM tree.

FilterSet(FilterSet) - Constructor for class ome.xml.model.FilterSet

Copy constructor.

filterSetEmissionFilterLinks - Variable in class ome.xml.model.Filter

filterSetExcitationFilterLinks - Variable in class ome.xml.model.Filter

filterSetMap - Variable in class loci.formats.in.FlexReader

filterSetRef - Variable in class loci.formats.in.ZeissCZIReader.Channel

FilterSetRef - Class in ome.xml.model

FilterSetRef() - Constructor for class ome.xml.model.FilterSetRef

Default constructor.

FilterSetRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterSetRef

Constructs FilterSetRef recursively from an XML DOM tree.

FilterSetRef(FilterSetRef) - Constructor for class ome.xml.model.FilterSetRef

Copy constructor.

filterSets - Variable in class loci.formats.in.FlexReader

filterSets - Variable in class ome.xml.model.Dichroic

filterSets - Variable in class ome.xml.model.Instrument

FilterType - Enum in ome.xml.model.enums

FilterType(String) - Constructor for enum ome.xml.model.enums.FilterType

FilterTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FilterType.

FilterTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilterTypeEnumHandler

FilterTypes - Interface in jj2000.j2k.wavelet

This interface defines the identifiers for the different types of filters that are supported.

filterWheel - Variable in class ome.xml.model.Filter

filterWheelName - Variable in class loci.formats.in.LeicaHandler

filts - Variable in class loci.formats.gui.ComboFileFilter

List of filters to be combined.

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor

finalize() - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Prints the timing information, if collected, and calls 'finalize' on the super class.

finalize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Prints the timing information, if collected, and calls 'finalize' on the super class.

finalize() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Prints the timing information, if collected, and calls 'finalize' on the super class.

finalize() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

finalize() - Method in class org.libjpegturbo.turbojpeg.TJCompressor

finalize() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

find(String[]) - Method in class loci.formats.in.PrairieReader

Finds the first file with one of the given suffixes.

find(String, String) - Static method in class loci.plugins.Updater

findAllIFDs() - Method in class ome.jxr.parser.IFDParser

findBiggest(int[]) - Method in class loci.poi.hssf.usermodel.EscherGraphics

findById(byte[]) - Static method in enum ome.jxr.ifd.PixelFormat

findById(int) - Static method in enum ome.jxr.image.BitDepth

findById(int) - Static method in enum ome.jxr.image.ComponentMode

findById(int) - Static method in enum ome.jxr.image.FrequencyBand

findById(int) - Static method in enum ome.jxr.image.InternalColorFormat

findById(int) - Static method in enum ome.jxr.image.OutputColorFormat

findByTag(short) - Static method in enum ome.jxr.ifd.IFDEntry

findByTypeCode(short) - Static method in enum ome.jxr.ifd.IFDEntryType

findCaseInsensitive(Location) - Static method in class loci.common.CaseInsensitiveLocation

findCellComment(Sheet, int, int) - Static method in class loci.poi.hssf.usermodel.HSSFCell

Cell comment finder.

FindCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

findChildWithID(Node, String, String) - Method in class loci.formats.services.OMEXMLServiceImpl

Return the child node with specified value for the "ID" attribute.

findClientData(EscherContainerRecord) - Method in class loci.poi.hssf.record.EscherAggregate

findColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Finds the first occurance of a given color

findColorIndex(PaletteBuilder.ColorNode, Color) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

findColumnIdx(int, int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

findColumnName(String) - Method in class mdbtools.tests.ColumnTest

findColumnType(String, String) - Method in class mdbtools.tests.ColumnTest

findDifferent(int, int) - Method in class mdbtools.dbengine.MemoryData

findEdges() - Method in class loci.plugins.util.RecordedImageProcessor

findEndOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

findEndOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

findExistingRowColHeaderNameRecord(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

findExistingRowColHeaderNameRecordIdx(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

findFiles(Location) - Method in class loci.formats.in.FlexReader

Search for files that correspond to the given file.

findFiles(Location, String[]) - Method in class loci.formats.in.FlexReader

findFirstCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

used internally to refresh the "first cell" when the first cell is removed.

findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Sheet

Returns the first occurance of a record matching a particular sid.

findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Workbook

Returns the first occurance of a record matching a particular sid.

findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Sheet

Finds the first occurance of a record matching a particular sid and returns it's position.

findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Workbook

Returns the index of a record matching a particular sid.

findFirstRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

used internally to refresh the "first row" when the first row is removed.

findFont(short, short, short, String, boolean, boolean, short, byte) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Finds a font that matches the one with the supplied attributes

findFormatRunAt(int) - Method in class loci.poi.hssf.record.UnicodeString

findFreeSPIDBlock() - Method in class loci.poi.hssf.model.DrawingManager

findFreeSPIDBlock() - Method in class loci.poi.hssf.model.DrawingManager2

findImages(RandomAccessInputStream) - Method in class loci.formats.in.TillVisionReader

findKeyValue(String[], String[][]) - Method in class loci.formats.in.ICSReader

findKeyValueForCategory(String[], String[][]) - Method in class loci.formats.in.ICSReader

findKeyValueOther(String[], String[][]) - Method in class loci.formats.in.ICSReader

findLastCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

used internally to refresh the "last cell" when the last cell is removed.

findLastRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

used internally to refresh the "last row" when the last row is removed.

findLEIFile(String) - Method in class loci.formats.in.LeicaReader

Find the .lei file that belongs to the same dataset as the given file.

findLogFiles() - Method in class loci.formats.in.DeltavisionReader

Find the log files.

findLogFiles() - Method in class loci.formats.in.FakeReader

findMetadataFiles() - Method in class loci.formats.in.PrairieReader

findNewDrawingGroupId() - Method in class loci.poi.hssf.model.DrawingManager

findNewDrawingGroupId() - Method in class loci.poi.hssf.model.DrawingManager2

findNext() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator

findNext() - Method in class loci.poi.hssf.usermodel.HSSFRow.CellIterator

findNextBlock() - Method in class loci.formats.in.OpenlabReader

findNextLine() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

findNextOffset(RandomAccessInputStream) - Method in class loci.formats.in.TillVisionReader

findNextOffset(RandomAccessInputStream, byte[]) - Method in class loci.formats.in.TillVisionReader

findNextRecordBySid(short, int) - Method in class loci.poi.hssf.model.Workbook

Returns the next occurance of a record matching a particular sid.

findNode(String, boolean, String) - Method in class loci.tests.testng.ConfigurationTree

Gets the tree node associated with the given file.

findOffset() - Method in class loci.formats.in.ImspectorReader

Find the offset to the next block of pixel data.

findOffset(boolean) - Method in class loci.formats.in.ImspectorReader

findOIFFile(String) - Method in class loci.formats.in.FV1000Reader

findPaletteEntry(PaletteBuilder.ColorNode, int, byte[], byte[], byte[]) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

findPattern(String) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(Location) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(File) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String, String[]) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String, String[], int[]) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String[]) - Static method in class loci.formats.FilePattern

Generate a pattern from a list of file names.

findPattern(String, String[], int, int, String) - Static method in class loci.formats.FilePattern

Recursive method for parsing a fixed-width numerical block.

findPattern(String) - Method in class loci.formats.FileStitcher

findPatterns(String) - Method in class loci.formats.FileStitcher

Finds the file pattern for the given ID, based on the state of the file stitcher.

findPixelOffsets() - Method in class loci.formats.in.JPXReader

findPixelsOffset(int) - Method in class loci.formats.in.VisitechReader

findRootNode(Node) - Method in class loci.formats.services.OMEXMLServiceImpl

Return the absolute root node for the specified child node.

findSeriesPatterns(String) - Static method in class loci.formats.FilePattern

findSeriesPatterns(String, String, String[]) - Static method in class loci.formats.FilePattern

findSheetNameFromExternSheet(short) - Method in class loci.poi.hssf.model.Workbook

finds the sheet name by his extern sheet index

findSimilarColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Finds the closest matching color in the custom palette.

findSmallest(int[]) - Method in class loci.poi.hssf.usermodel.EscherGraphics

findStartOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

findStartOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

findString(String...) - Method in class loci.common.NIOInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class loci.common.NIOInputStream

Reads or skips a string ending with one of the given terminating substrings.

findString(int, String...) - Method in class loci.common.NIOInputStream

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class loci.common.NIOInputStream

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(String...) - Method in class loci.common.RandomAccessInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class loci.common.RandomAccessInputStream

Reads or skips a string ending with one of the given terminating substrings.

findString(int, String...) - Method in class loci.common.RandomAccessInputStream

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class loci.common.RandomAccessInputStream

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(String) - Method in class loci.formats.in.KodakReader

findStringValue(int, String) - Method in class mdbtools.tests.ColumnTest

findTableIndex(Table, Table[]) - Method in class mdbtools.dbengine.SelectEngine

findTIFFs() - Method in class loci.formats.in.MetamorphTiffReader

findTruncIndices(int, int, int, int, SubbandAn, float, int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

This function finds the new truncation points indices for a packet.

FINE_DOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

FINE_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Small fine dots

finish(ImportProcess) - Method in class loci.plugins.in.Importer

finishedTileComponent - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

A flag indicating for each component if all the code-blocks of the * current tile have been returned.

finishLengthCalculation(int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

Terminates the calculation of the required length for each coding pass.

finishTime - Variable in class loci.formats.in.PerkinElmerReader

finishTiming() - Method in class loci.plugins.in.ImagePlusReader

FIRMWARE_VERSION - Static variable in class loci.formats.in.NikonReader

first - Variable in class loci.common.xml.ValidationSAXHandler

FIRST_BYPASS_PASS_IDX - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The index of the first "raw" pass, if bypass mode is on.

FIRST_CODE - Static variable in class loci.formats.codec.LZWCodec

FIRST_COLOR_INDEX - Static variable in class loci.poi.hssf.record.PaletteRecord

The byte index of the first color

first_data_pg - Variable in class mdbtools.libmdb.MdbTableDef

firstAvailable(int...) - Method in class loci.plugins.in.SwapDialog

firstC - Variable in class ome.xml.model.TiffData

firstcell - Variable in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

firstDataStream - Variable in class loci.formats.tools.AmiraParameters

firstFile - Variable in class loci.formats.in.PrairieMetadata.Frame

The first actual <File> element for this <Frame>.

firstFrame - Variable in class loci.formats.in.PrairieMetadata.Sequence

The first actual <Frame> element for this <Sequence>.

firstIFD - Variable in class loci.formats.tiff.TiffParser

Cached first IFD in the current file.

firstIndex - Variable in class loci.formats.in.PerkinElmerReader.PixelsFile

firstLowBit(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

firstName - Variable in class ome.xml.model.Experimenter

firstPackOff - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Offset of the first packet in each tile-part in each tile

firstrow - Variable in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

firstrow - Variable in class loci.poi.hssf.usermodel.HSSFSheet

firstSequence - Variable in class loci.formats.in.PrairieMetadata

The first actual <Sequence> element.

firstSeriesChannels - Variable in class loci.formats.in.MetamorphReader

firstStamp - Variable in class loci.formats.in.LeicaHandler

firstT - Variable in class ome.xml.model.TiffData

firstTilePartHeadLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

First tile part header length

firstTimeLoop - Variable in class loci.formats.in.ND2Handler

firstWellPlanes() - Method in class loci.formats.in.FlexReader

Returns the number of planes in the first well that has data.

firstZ - Variable in class ome.xml.model.TiffData

fis - Variable in class loci.formats.Memoizer.KryoDeser

FitsReader - Class in loci.formats.in

FitsReader is the file format reader for Flexible Image Transport System (FITS) images.

FitsReader() - Constructor for class loci.formats.in.FitsReader

Constructs a new FitsReader.

fittopage - Static variable in class loci.poi.hssf.record.WSBoolRecord

fixed - Variable in class loci.formats.FilePatternBlock

Whether or not this is a fixed-width block.

FIXED_SIZE - Static variable in class loci.poi.ddf.EscherArrayProperty

The size of the header that goes at the start of the array, before the data

FixedField - Interface in loci.poi.util

behavior of a field at a fixed location within a byte array

fixTabIdRecord() - Method in class loci.poi.hssf.model.Workbook

make the tabid record look like the current situation.

FL - Static variable in class loci.formats.in.DicomReader

FLAG_ACCURATEDCT - Static variable in class org.libjpegturbo.turbojpeg.TJ

Use the most accurate DCT/IDCT algorithm available in the underlying codec.

FLAG_BACKGROUND - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_BOTTOMUP - Static variable in class org.libjpegturbo.turbojpeg.TJ

The uncompressed source/destination image is stored in bottom-up (Windows, OpenGL) order, not top-down (X11) order.

FLAG_CHILD - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_CONNECTOR - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_DELETED - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_FASTDCT - Static variable in class org.libjpegturbo.turbojpeg.TJ

Use the fastest DCT/IDCT algorithm available in the underlying codec.

FLAG_FASTUPSAMPLE - Static variable in class org.libjpegturbo.turbojpeg.TJ

When decompressing, use the fastest chrominance upsampling algorithm available in the underlying codec.

FLAG_FLIPHORIZ - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_FLIPVERT - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_FORCEMMX - Static variable in class org.libjpegturbo.turbojpeg.TJ

Turn off CPU auto-detection and force TurboJPEG to use MMX code (if the underlying codec supports it.)

FLAG_FORCESSE - Static variable in class org.libjpegturbo.turbojpeg.TJ

Turn off CPU auto-detection and force TurboJPEG to use SSE code (if the underlying codec supports it.)

FLAG_FORCESSE2 - Static variable in class org.libjpegturbo.turbojpeg.TJ

Turn off CPU auto-detection and force TurboJPEG to use SSE2 code (if the underlying codec supports it.)

FLAG_FORCESSE3 - Static variable in class org.libjpegturbo.turbojpeg.TJ

Turn off CPU auto-detection and force TurboJPEG to use SSE3 code (if the underlying codec supports it.)

FLAG_GROUP - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_HASSHAPETYPE - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_HAVEANCHOR - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_HAVEMASTER - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_OLESHAPE - Static variable in class loci.poi.ddf.EscherSpRecord

FLAG_PATRIARCH - Static variable in class loci.poi.ddf.EscherSpRecord

flags - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

flags - Variable in class loci.formats.in.BaseZeissReader.Layer

flags - Variable in class loci.formats.in.SDTInfo

Scan clocks bits 2-0 (frame, line, pixel), rates_read - bit 15.

FLASH - Static variable in class loci.formats.tiff.IFD

FLASH_COMPENSATION - Static variable in class loci.formats.in.NikonReader

FLASH_DID_NOT_FIRE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash did not fire.

FLASH_ENERGY - Static variable in class loci.formats.tiff.IFD

FLASH_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash fired, but the strobe return status is unknown.

FLASH_MASK_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating that the flash fired.

FLASH_MASK_FUNCTION_NOT_PRESENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating no flash function present.

FLASH_MASK_MODE_AUTO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating auto mode.

FLASH_MASK_MODE_FLASH_FIRING - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating compulsory flash firing mode.

FLASH_MASK_MODE_FLASH_SUPPRESSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating compulsory flash suppression mode.

FLASH_MASK_RED_EYE_REDUCTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating red-eye reduction supported.

FLASH_MASK_RETURN_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating strobe return light detected.

FLASH_MASK_RETURN_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating strobe return light not detected.

FLASH_MODE - Static variable in class loci.formats.in.NikonReader

FLASH_PIX_VERSION - Static variable in class loci.formats.tiff.IFD

FLASH_SETTING - Static variable in class loci.formats.in.NikonReader

FLASH_STROBE_RETURN_LIGHT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash fired, and the strobe return light was detected.

FLASH_STROBE_RETURN_LIGHT_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the flash fired, but the strobe return light was not detected.

FLASH_USED - Static variable in class loci.formats.in.NikonReader

flattenArrays(Object[]) - Method in class loci.poi.util.POILogger

Flattens any contained objects.

flattenedResolutions - Variable in class loci.formats.FormatReader

Whether or not resolutions are flattened.

flattenHashtables() - Method in class loci.formats.FormatReader

Call FormatReader.updateMetadataLists(Hashtable) on all metadata hashtables.

flattenIntoHashMap() - Method in class loci.common.IniList

Flattens all of the INI tables into a single HashMap whose keys are of the format "[table name] table key".

flbckX - Variable in class loci.formats.in.SDTInfo

flbckY - Variable in class loci.formats.in.SDTInfo

FLEX - Static variable in class loci.formats.in.FlexReader

Custom IFD entry for Flex XML.

flex - Variable in class loci.formats.in.FlexReader.MeaHandler

FLEX_SUFFIX - Static variable in class loci.formats.in.FlexReader

flexFiles - Variable in class loci.formats.in.FlexReader

FlexReader - Class in loci.formats.in

FlexReader is a file format reader for Evotec Flex files.

FlexReader() - Constructor for class loci.formats.in.FlexReader

Constructs a new Flex reader.

FlexReader.FilterGroup - Class in loci.formats.in

Stores a grouping of filters.

FlexReader.FilterGroup() - Constructor for class loci.formats.in.FlexReader.FilterGroup

FlexReader.FlexFile - Class in loci.formats.in

FlexReader.FlexFile() - Constructor for class loci.formats.in.FlexReader.FlexFile

FlexReader.FlexHandler - Class in loci.formats.in

SAX handler for parsing XML.

FlexReader.FlexHandler(List<String>, List<String>, MetadataStore, boolean, int, int) - Constructor for class loci.formats.in.FlexReader.FlexHandler

FlexReader.MeaHandler - Class in loci.formats.in

SAX handler for parsing XML from .mea files.

FlexReader.MeaHandler() - Constructor for class loci.formats.in.FlexReader.MeaHandler

FlexReader.ResHandler - Class in loci.formats.in

SAX handler for parsing XML from .res files.

FlexReader.ResHandler() - Constructor for class loci.formats.in.FlexReader.ResHandler

FlexWidgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats Flex support.

FlexWidgets() - Constructor for class loci.plugins.config.FlexWidgets

FLIM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the fluorescence-lifetime domain.

flip - Variable in class loci.formats.in.NativeQTReader

flipHorizontal() - Method in class loci.plugins.util.RecordedImageProcessor

flipTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

flipTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor

Table for flipping bytes from LSB-to-MSB to MSB-to-LSB.

flipVertical() - Method in class loci.plugins.util.RecordedImageProcessor

FLOAT - Static variable in class loci.formats.FormatTools

Identifies the FLOAT data type used to store pixel values.

FLOAT - Static variable in class loci.formats.in.CellSensReader

FLOAT - Static variable in class loci.formats.in.GatanReader

FLOAT_ABS_PRECISION - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The precision for float data type, in an absolute sense.

FLOAT_REL_PRECISION - Static variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

The relative precision for float data.

floatsToBytes(float[], boolean) - Static method in class loci.common.DataTools

Translates an array of float values into an array of byte values.

floatToBytes(float, boolean) - Static method in class loci.common.DataTools

Translates the float value into an array of four bytes.

floatValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a float.

FLOW_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created automatically in Continuous Flow mode measurement (no setup, only data).

FlowSightReader - Class in loci.formats.in

FlowSightReader() - Constructor for class loci.formats.in.FlowSightReader

fluor - Variable in class loci.formats.in.ZeissCZIReader.Channel

fluor - Variable in class ome.xml.model.Channel

FLUOVIEW_MAGIC_STRING - Static variable in class loci.formats.in.FluoviewReader

String identifying a Fluoview file.

FluoviewReader - Class in loci.formats.in

FluoviewReader is the file format reader for Olympus Fluoview TIFF files AND Andor Bio-imaging Division (ABD) TIFF files.

FluoviewReader() - Constructor for class loci.formats.in.FluoviewReader

Constructs a new Fluoview TIFF reader.

flush() - Method in class com.sun.media.imageio.stream.RawImageInputStream

flush() - Method in class com.sun.media.imageioimpl.common.BitFile

flush() - Method in class com.sun.media.imageioimpl.common.LZWCompressor

Indicate to compressor that no more data to go so write out any remaining buffered data.

flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

A null operation as writing is not supported.

flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

flush() - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput

Flushes (i.e.

flush() - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput

Writes the contents of the bit buffer and byte aligns the output by filling bits with an alternating sequence of 0's and 1's.

flush() - Method in interface jj2000.j2k.io.BinaryDataOutput

Any data that has been buffered must be written, and the stream should be realigned at the byte level.

flush() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Any data that has been buffered must be written (including buffering at the bit level), and the stream should be realigned at the byte level.

flush() - Method in class jj2000.j2k.util.ISRandomAccessIO

Does nothing since this class does not implement data output.

flush() - Method in interface jj2000.j2k.util.MsgLogger

Writes any buffered data from the println() method to the device.

flush() - Method in class jj2000.j2k.util.StreamMsgLogger

Writes any buffered data from the print() and println() methods to the device.

flush() - Method in class loci.common.RandomAccessOutputStream

flush() - Method in class loci.plugins.config.TextAreaWriter

Flushing a TextAreaWriter does nothing .

flush() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Flushes this output stream and forces any buffered output bytes to be written out.

flushBefore(long) - Method in class com.sun.media.imageio.stream.RawImageInputStream

flushBuffer() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Write to the FileChannel any remaining bytes in the byte output buffer.

FM - Static variable in class ome.units.UNITS

FM_LOSSLESS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Distortion estimation lookup table for bits coded using the magnitude-refinement (MR) primative, for lossless coding and last bit-plane.

FM_LOSSY - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Distortion estimation lookup table for bits coded using the magnitude-refinement (MR) primative, for lossy coding (i.e.

fmt - Variable in class loci.formats.in.GelReader

fmt - Variable in class loci.formats.in.OpenlabReader

fmt - Variable in class mdbtools.libmdb.MdbHandle

FnGroupCountRecord - Class in loci.poi.hssf.record

Title: Function Group Count Record

FnGroupCountRecord() - Constructor for class loci.poi.hssf.record.FnGroupCountRecord

FnGroupCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FnGroupCountRecord

Constructs a FnGroupCount record and sets its fields appropriately.

FOCAL_LENGTH - Static variable in class loci.formats.tiff.IFD

FOCAL_LENGTH_35MM_FILM - Static variable in class loci.formats.tiff.IFD

FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class loci.formats.tiff.IFD

FOCAL_PLANE_RESOLUTION_UNIT_CENTIMETER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneXResolution" tag.

FOCAL_PLANE_RESOLUTION_UNIT_INCH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneXResolution" tag.

FOCAL_PLANE_RESOLUTION_UNIT_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneResolutionUnit" tag.

FOCAL_PLANE_X_RESOLUTION - Static variable in class loci.formats.tiff.IFD

FOCAL_PLANE_Y_RESOLUTION - Static variable in class loci.formats.tiff.IFD

FOCUS_IMAGE - Static variable in class loci.formats.in.CellSensReader

FOCUS_MODE - Static variable in class loci.formats.in.NikonReader

focusGained(FocusEvent) - Method in class loci.plugins.in.MainDialog

Handles information pane updates when component focus changes.

focusLost(FocusEvent) - Method in class loci.plugins.in.MainDialog

font - Variable in class loci.formats.tools.MakeTestOmeTiff.TextLine

font - Variable in class loci.poi.hssf.usermodel.EscherGraphics

font - Variable in class loci.poi.hssf.usermodel.HSSFFont

font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string that represents the change in font.

font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string that represents the change in font.

FONT_ARIAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Arial font

FontBasisRecord - Class in loci.poi.hssf.record

The font basis record stores various font metrics.

FontBasisRecord() - Constructor for class loci.poi.hssf.record.FontBasisRecord

FontBasisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontBasisRecord

Constructs a FontBasis record and sets its fields appropriately.

FontDetails - Class in loci.poi.hssf.usermodel

Stores width and height details about a font.

FontDetails(String, int) - Constructor for class loci.poi.hssf.usermodel.FontDetails

Construct the font details with the given name and height.

fontDetailsMap - Static variable in class loci.poi.hssf.usermodel.StaticFontMetrics

Our cache of font details we've already looked up

FontFamily - Enum in ome.xml.model.enums

FontFamily(String) - Constructor for enum ome.xml.model.enums.FontFamily

fontFamily - Variable in class ome.xml.model.Shape

FontFamilyEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FontFamily.

FontFamilyEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontFamilyEnumHandler

fontIndex - Variable in class loci.poi.hssf.record.UnicodeString.FormatRun

FontIndexRecord - Class in loci.poi.hssf.record

The font index record indexes into the font table for the text record.

FontIndexRecord() - Constructor for class loci.poi.hssf.record.FontIndexRecord

FontIndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontIndexRecord

Constructs a FontIndex record and sets its fields appropriately.

fontMetricsProps - Static variable in class loci.poi.hssf.usermodel.StaticFontMetrics

The font metrics property file we're using

fontName - Variable in class loci.formats.in.BaseZeissReader.Shape

fontName - Variable in class loci.formats.in.LeicaHandler.ROI

fontName - Variable in class loci.formats.in.LIFReader.ROI

fontName - Variable in class loci.poi.hssf.usermodel.FontDetails

fontpos - Variable in class loci.poi.hssf.model.WorkbookRecordList

FontRecord - Class in loci.poi.hssf.record

Title: Font Record - descrbes a font in the workbook (index = 0-3,5-infinity - skip 4)

FontRecord() - Constructor for class loci.poi.hssf.record.FontRecord

FontRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontRecord

Constructs a Font record and sets its fields appropriately.

fontSize - Variable in class loci.formats.in.BaseZeissReader.Shape

fontSize - Variable in class loci.formats.in.LeicaHandler.ROI

fontSize - Variable in class loci.formats.in.LIFReader.ROI

fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string that represents the change in font size.

fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string that represents the change in font size.

fontSize - Variable in class ome.xml.model.Shape

FontStyle - Enum in ome.xml.model.enums

FontStyle(String) - Constructor for enum ome.xml.model.enums.FontStyle

fontStyle - Variable in class ome.xml.model.Shape

FontStyleEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FontStyle.

FontStyleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontStyleEnumHandler

fontWeight - Variable in class loci.formats.in.BaseZeissReader.Shape

footer - Variable in class loci.poi.hssf.model.Sheet

FOOTER_SIZE - Static variable in class loci.formats.in.SIFReader

FooterRecord - Class in loci.poi.hssf.record

Title: Footer Record

FooterRecord() - Constructor for class loci.poi.hssf.record.FooterRecord

FooterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FooterRecord

Constructs a FooterRecord record and sets its fields appropriately.

footerRecord - Variable in class loci.poi.hssf.usermodel.HSSFFooter

force - Variable in class loci.common.ReflectedUniverse

Deprecated.

Whether to force our way past restrictive access modifiers.

force - Variable in class loci.formats.gui.DataConverter

forceType - Variable in class loci.formats.gui.DataConverter

forEachTile(TestTools.TileLoopIteration, int, int, int, int, int, int, int) - Static method in class loci.tests.testng.TestTools

Iterates over every tile in a given pixel buffer based on the over arching dimensions and a requested maximum tile width and height.

foreground - Variable in class loci.poi.hssf.usermodel.EscherGraphics

forkFile - Variable in class loci.formats.in.NativeQTReader

format - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

cache the metadata format

format - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

cache the J2KMetadataFormat

format - Variable in class loci.formats.FormatHandler

Name of this file format.

format - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's format.

format - Variable in class loci.poi.hssf.usermodel.HSSFCellStyle

format(String, Object[]) - Static method in class loci.poi.util.StringUtil

Apply printf() like formatting to a string.

FORMAT_ASSERTION - Static variable in class loci.poi.hpsf.PropertySet

The "format" field must equal this value.

FORMAT_MASK - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData

formatCompression(IFD) - Method in class loci.formats.out.TiffWriter

Sets the compression code for the specified IFD.

formatDate(String, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String, boolean) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String, boolean, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[]) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[], boolean) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[], String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[], boolean, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

FormatEntry - Class in loci.plugins.config

A list entry for the configuration window's Formats tab.

FormatEntry(PrintWriter, Object) - Constructor for class loci.plugins.config.FormatEntry

FormatException - Exception in loci.formats

FormatException is the exception thrown when something goes wrong performing a file format operation.

FormatException() - Constructor for exception loci.formats.FormatException

FormatException(String) - Constructor for exception loci.formats.FormatException

FormatException(String, Throwable) - Constructor for exception loci.formats.FormatException

FormatException(Throwable) - Constructor for exception loci.formats.FormatException

FormatFileFilter - Class in loci.formats.gui

A file filter for a biological file format, for use with a JFileChooser.

FormatFileFilter(IFormatReader) - Constructor for class loci.formats.gui.FormatFileFilter

Constructs a new filter that accepts files of the given reader's type.

FormatFileFilter(IFormatReader, boolean) - Constructor for class loci.formats.gui.FormatFileFilter

Constructs a new filter that accepts files of the given reader's type, allowing the reader to open files only if the allowOpen flag is set.

FormatHandler - Class in loci.formats

Abstract superclass of all biological file format readers and writers.

FormatHandler(String, String) - Constructor for class loci.formats.FormatHandler

Constructs a format handler with the given name and default suffix.

FormatHandler(String, String[]) - Constructor for class loci.formats.FormatHandler

Constructs a format handler with the given name and default suffixes.

formatID - Variable in class loci.poi.hpsf.Section

The section's format ID, Section.getFormatID().

formatInfo - Variable in class loci.plugins.config.ConfigWindow

formatIterator() - Method in class loci.poi.hssf.record.UnicodeString

formatLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

formatName - Variable in class loci.plugins.config.FormatEntry

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

formatNames - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

FormatReader - Class in loci.formats

Abstract superclass of all biological file format readers.

FormatReader(String, String) - Constructor for class loci.formats.FormatReader

Constructs a format reader with the given name and default suffix.

FormatReader(String, String[]) - Constructor for class loci.formats.FormatReader

Constructs a format reader with the given name and default suffixes.

FormatReaderTest - Class in loci.tests.testng

TestNG tester for Bio-Formats file format readers.

FormatReaderTest(String, float, boolean) - Constructor for class loci.tests.testng.FormatReaderTest

FormatReaderTestFactory - Class in loci.tests.testng

Factory for scanning a directory structure and generating instances of FormatReaderTest based on the image files found.

FormatReaderTestFactory() - Constructor for class loci.tests.testng.FormatReaderTestFactory

FormatRecord - Class in loci.poi.hssf.record

Title: Format Record

FormatRecord() - Constructor for class loci.poi.hssf.record.FormatRecord

FormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormatRecord

Constructs a Format record and sets its fields appropriately.

FORMATS - Static variable in class loci.formats.in.GelReader

formats - Variable in class loci.poi.hssf.model.Workbook

formats - Variable in class loci.poi.hssf.usermodel.HSSFDataFormat

formatsList - Variable in class loci.plugins.config.ConfigWindow

formatsListModel - Variable in class loci.plugins.config.ConfigWindow

formatTag(int) - Method in class loci.formats.in.DicomReader

formatted - Static variable in class loci.poi.hssf.record.RowRecord

formatter - Variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Used to keep track of the data formatter so that all createDataFormatter calls return the same one for a given book.

formatText - Variable in class loci.formats.gui.PreviewPane

formatTip - Variable in class loci.formats.gui.PreviewPane

FormatTools - Class in loci.formats

A utility class for format reader and writer implementations.

FormatTools() - Constructor for class loci.formats.FormatTools

FormatWriter - Class in loci.formats

Abstract superclass of all biological file format writers.

FormatWriter(String, String) - Constructor for class loci.formats.FormatWriter

Constructs a format writer with the given name and default suffix.

FormatWriter(String, String[]) - Constructor for class loci.formats.FormatWriter

Constructs a format writer with the given name and default suffixes.

FormatWriterTest - Class in loci.tests.testng

TestNG tester for Bio-Formats file format writers.

FormatWriterTest(String) - Constructor for class loci.tests.testng.FormatWriterTest

FormatWriterTestFactory - Class in loci.tests.testng

Factory for scanning a directory structure and generating instances of FormatWriterTest based on the image files found.

FormatWriterTestFactory() - Constructor for class loci.tests.testng.FormatWriterTestFactory

FORMULA_TYPE_ARRAY - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_CELL - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_CONDFOMRAT - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_NAMEDRANGE - Static variable in class loci.poi.hssf.model.FormulaParser

FORMULA_TYPE_SHARED - Static variable in class loci.poi.hssf.model.FormulaParser

formulaLength - Variable in class loci.poi.hssf.model.FormulaParser

FormulaParser - Class in loci.poi.hssf.model

This class parses a formula string into a List of tokens in RPN order.

FormulaParser(String, Workbook) - Constructor for class loci.poi.hssf.model.FormulaParser

Create the formula parser, with the string that is to be parsed against the supplied workbook.

formulaRecord - Variable in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

FormulaRecord - Class in loci.poi.hssf.record

Formula Record.

FormulaRecord() - Constructor for class loci.poi.hssf.record.FormulaRecord

Creates new FormulaRecord

FormulaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormulaRecord

Constructs a Formula record and sets its fields appropriately.

FormulaRecordAggregate - Class in loci.poi.hssf.record.aggregates

The formula record aggregate is used to join together the formula record and it's (optional) string record and (optional) Shared Formula Record (template reads, excel optimization).

FormulaRecordAggregate(FormulaRecord, StringRecord) - Constructor for class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

formulasNotResults - Variable in class loci.poi.hssf.extractor.ExcelExtractor

formulaString(FormulaRecord) - Method in class loci.poi.hssf.dev.FormulaViewer

formulaString - Variable in class loci.poi.hssf.model.FormulaParser

formulaTokens - Variable in class loci.poi.hssf.record.LinkedDataFormulaField

FormulaViewer - Class in loci.poi.hssf.dev

FormulaViewer - finds formulas in a BIFF8 file and attempts to read them/display data from them.

FormulaViewer() - Constructor for class loci.poi.hssf.dev.FormulaViewer

Creates new FormulaViewer

FORW_ICT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for the Forward Irreversible Component Transformation (FORW_ICT).

FORW_RCT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for the Forward Reversible Component Transformation (FORW_RCT).

FORWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy

forwardWarningMessage(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

Package scope method to allow decompressors, for example, to emit warning messages.

ForwardWT - Class in jj2000.j2k.wavelet.analysis

This abstract class represents the forward wavelet transform functional block.

ForwardWT(ImgData) - Constructor for class jj2000.j2k.wavelet.analysis.ForwardWT

Initializes this object for the specified number of tiles 'nt' and components 'nc'.

ForwCompTransf - Class in jj2000.j2k.image.forwcomptransf

This class apply component transformations to the tiles depending on user specifications.

ForwCompTransf(BlkImgDataSrc, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Constructs a new ForwCompTransf object that operates on the specified source of image data.

ForwCompTransfSpec - Class in jj2000.j2k.image.forwcomptransf

This class extends CompTransfSpec class in order to hold encoder specific aspects of CompTransfSpec.

ForwCompTransfSpec(int, int, byte, AnWTFilterSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec

Constructs a new 'ForwCompTransfSpec' for the specified number of components and tiles and the arguments of optName option.

forwICT(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply forward irreversible component transformation to obtain requested component from specified block of data.

forwRCT(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply forward component transformation to obtain requested component from specified block of data.

ForwWT - Interface in jj2000.j2k.wavelet.analysis

This interface extends the WaveletTransform with the specifics of forward wavelet transforms.

ForwWTDataProps - Interface in jj2000.j2k.wavelet.analysis

This interface extends the ImgData interface with methods that are necessary for forward wavelet data (i.e.

ForwWTFull - Class in jj2000.j2k.wavelet.analysis

This class implements the ForwardWT with the full-page approach to be used either with integer or floating-point filters

ForwWTFull(BlkImgDataSrc, J2KImageWriteParamJava, int, int) - Constructor for class jj2000.j2k.wavelet.analysis.ForwWTFull

Initializes this object with the given source of image data and with all the decompositon parameters

fos - Variable in class loci.formats.Memoizer.KryoDeser

found - Variable in class loci.formats.in.ZeissTIFFHandler.TagSet

foundChannelTag - Variable in class loci.formats.in.CellSensReader

foundPlateLayout - Variable in class loci.formats.in.ScanrReader.ScanrHandler

foundPositions - Variable in class loci.formats.in.ScanrReader

fp - Variable in class jj2000.j2k.image.ImgDataConverter

The number of fraction bits in the casted ints

fp - Variable in class loci.common.StreamHandle

Current position within the stream.

fp - Variable in class loci.formats.AxisGuesser

File pattern identifying dimensional axis blocks.

fp - Variable in class loci.plugins.in.FilePatternDialog

FPA - Static variable in class ome.units.UNITS

fps - Variable in class loci.formats.FormatWriter

Frame rate to use when writing in frames per second, if applicable.

fps - Variable in class loci.formats.gui.DataConverter

fps - Variable in class loci.formats.gui.ImageViewer

fpsSpin - Variable in class loci.plugins.util.DataBrowser

FQColumn - Class in mdbtools.dbengine.sql

FQColumn(int, int) - Constructor for class mdbtools.dbengine.sql.FQColumn

FRAC_BITS - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

FRAC_SCALE - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor

fracBits - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

frame - Variable in class loci.formats.in.PrairieMetadata.PFile

The <Frame> containing this <File>.

FRAME_OFFSET - Static variable in class loci.formats.out.AVIWriter

FRAME_OFFSET_2 - Static variable in class loci.formats.out.AVIWriter

FRAME_ORIGIN - Static variable in class loci.formats.in.CellSensReader

FRAME_PROPERTIES - Static variable in class loci.formats.in.CellSensReader

FRAME_SCALE - Static variable in class loci.formats.in.CellSensReader

FRAME_SIZE - Static variable in class loci.formats.in.CellSensReader

FRAME_TRANSFER - Static variable in class loci.formats.in.CellSensReader

FRAME_TYPE - Static variable in class loci.formats.in.CellSensReader

frameCoordinates - Variable in class loci.formats.in.APNGReader

frameIndex(PrairieMetadata.Sequence, int, int, int) - Method in class loci.formats.in.PrairieReader

Gets the frame index associated with the given (Z, T) position of the specified series.

FrameRecord - Class in loci.poi.hssf.record

The frame record indicates whether there is a border around the displayed text of a chart.

FrameRecord() - Constructor for class loci.poi.hssf.record.FrameRecord

FrameRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FrameRecord

Constructs a Frame record and sets its fields appropriately.

frames - Variable in class loci.formats.in.PrairieMetadata.Sequence

<Frame> elements beneath this <Sequence>, keyed on each frame's index.

framesAreTime - Variable in class loci.formats.in.PrairieReader

Whether a series uses Frames as time points rather than focal planes (i.e., sizeZ and sizeT values inverted).

frameValues - Variable in class loci.formats.in.PrairieMetadata.Frame

Table of key/value pairs for this <Frame>.

FREE_BYTE_COUNTS - Static variable in class loci.formats.tiff.IFD

FREE_LINE - Static variable in class loci.formats.in.FV1000Reader

FREE_OFFSETS - Static variable in class loci.formats.tiff.IFD

FREE_SHAPE - Static variable in class loci.formats.in.FV1000Reader

freeTree(PaletteBuilder.ColorNode) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

freezePanes - Variable in class loci.poi.hssf.record.WindowTwoRecord

freezePanesNoSplit - Variable in class loci.poi.hssf.record.WindowTwoRecord

frequencies - Variable in class loci.formats.in.LiFlimReader

FREQUENCY - Static variable in class loci.formats.FormatTools

Identifies the Frequency dimensional type, representing a dimension consisting of frequencies.

Frequency - Class in ome.units.quantity

A wrapper for the Frequency class from the units implementation.

Frequency(Number, Unit<Frequency>) - Constructor for class ome.units.quantity.Frequency

FrequencyBand - Enum in ome.jxr.image

Enumeration of available frequency band counts.

FrequencyBand(int, Integer...) - Constructor for enum ome.jxr.image.FrequencyBand

frequencyModeCodestreamFlag - Variable in class ome.jxr.parser.DatastreamParser

frequencyMultiplication - Variable in class ome.xml.model.Laser

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

fromCIEXYZ(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace

fromClause() - Method in class mdbtools.dbengine.SelectEngine

fromISO8859(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata

fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFColorConverter

Converts an RGB triple into the native color space of this TIFFColorConverter, and stores the result in the first three entries of the result array.

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter

fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter

fromRGB(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace

fromString(String) - Static method in enum ome.xml.model.enums.AcquisitionMode

fromString(String) - Static method in enum ome.xml.model.enums.ArcType

fromString(String) - Static method in enum ome.xml.model.enums.Binning

fromString(String) - Static method in enum ome.xml.model.enums.Compression

fromString(String) - Static method in enum ome.xml.model.enums.ContrastMethod

fromString(String) - Static method in enum ome.xml.model.enums.Correction

fromString(String) - Static method in enum ome.xml.model.enums.DetectorType

fromString(String) - Static method in enum ome.xml.model.enums.DimensionOrder

fromString(String) - Static method in enum ome.xml.model.enums.ExperimentType

fromString(String) - Static method in enum ome.xml.model.enums.FilamentType

fromString(String) - Static method in enum ome.xml.model.enums.FillRule

fromString(String) - Static method in enum ome.xml.model.enums.FilterType

fromString(String) - Static method in enum ome.xml.model.enums.FontFamily

fromString(String) - Static method in enum ome.xml.model.enums.FontStyle

fromString(String) - Static method in enum ome.xml.model.enums.IlluminationType

fromString(String) - Static method in enum ome.xml.model.enums.Immersion

fromString(String) - Static method in enum ome.xml.model.enums.LaserMedium

fromString(String) - Static method in enum ome.xml.model.enums.LaserType

fromString(String) - Static method in enum ome.xml.model.enums.LineCap

fromString(String) - Static method in enum ome.xml.model.enums.Marker

fromString(String) - Static method in enum ome.xml.model.enums.Medium

fromString(String) - Static method in enum ome.xml.model.enums.MicrobeamManipulationType

fromString(String) - Static method in enum ome.xml.model.enums.MicroscopeType

fromString(String) - Static method in enum ome.xml.model.enums.NamingConvention

fromString(String) - Static method in enum ome.xml.model.enums.PixelType

fromString(String) - Static method in enum ome.xml.model.enums.Pulse

fromString(String) - Static method in enum ome.xml.model.enums.UnitsElectricPotential

fromString(String) - Static method in enum ome.xml.model.enums.UnitsFrequency

fromString(String) - Static method in enum ome.xml.model.enums.UnitsLength

fromString(String) - Static method in enum ome.xml.model.enums.UnitsPower

fromString(String) - Static method in enum ome.xml.model.enums.UnitsPressure

fromString(String) - Static method in enum ome.xml.model.enums.UnitsTemperature

fromString(String) - Static method in enum ome.xml.model.enums.UnitsTime

FRONT_MASK - Static variable in class loci.common.RandomAccessInputStream

Various bitmasks for the xxxx0000 side of a byte.

FRONT_MASK - Static variable in class loci.formats.codec.BitBuffer

Deprecated.

Various bitmasks for the xxxx0000 side of a byte.

frozen - Variable in class loci.poi.hssf.util.PaneInformation

FS - Static variable in class ome.units.UNITS

FS_LOSSLESS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Distortion estimation lookup table for bits coded using the sign-code (SC) primative, for lossless coding and last bit-plane.

FS_LOSSY - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Distortion estimation lookup table for bits coded using the sign-code (SC) primative, for lossy coding (i.e.

FT - Static variable in class ome.units.UNITS

FT_BR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

File Type Fields

FTB_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter

Length of File Type Box

ftpIdx - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The index of the first truncation point returned

FujiReader - Class in loci.formats.in

FujiReader is the file format reader for Fuji LAS 3000 datasets.

FujiReader() - Constructor for class loci.formats.in.FujiReader

Constructs a new Fuji reader.

fullImage - Variable in class loci.formats.in.MRWReader

FuncPtg - Class in loci.poi.hssf.record.formula

FuncPtg() - Constructor for class loci.poi.hssf.record.formula.FuncPtg

FuncPtgs are defined to be 4 bytes but the actual FuncPtg uses only 2 bytes.

FuncPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncPtg

Creates new function pointer from a byte array usually called while reading an excel file.

function(String) - Method in class loci.poi.hssf.model.FormulaParser

Function - Interface in mdbtools.dbengine.functions

All functions must implement this

function - Variable in class mdbtools.dbengine.sql.FunctionDef

functionData - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg

FunctionDef - Class in mdbtools.dbengine.sql

A defination of a function, used in the parse tree

FunctionDef() - Constructor for class mdbtools.dbengine.sql.FunctionDef

functionTokens - Variable in class loci.poi.hssf.model.FormulaParser

Using an unsynchronized linkedlist to implement a stack since we're not multi-threaded.

FuncVarPtg - Class in loci.poi.hssf.record.formula

FuncVarPtg() - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

FuncVarPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

Creates new function pointer from a byte array usually called while reading an excel file.

FuncVarPtg(String, byte) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

Create a function ptg from a string tokenised by the parser

FV - Static variable in class ome.units.UNITS

FV1000_MAGIC_STRING_1 - Static variable in class loci.formats.in.FV1000Reader

FV1000_MAGIC_STRING_2 - Static variable in class loci.formats.in.FV1000Reader

FV1000_SUFFIXES - Static variable in class loci.formats.in.FV1000Reader

FV1000Reader - Class in loci.formats.in

FV1000Reader is the file format reader for Fluoview FV 1000 OIB and Fluoview FV 1000 OIF files.

FV1000Reader() - Constructor for class loci.formats.in.FV1000Reader

Constructs a new FV1000 reader.

FV1000Reader.ChannelData - Class in loci.formats.in

FV1000Reader.ChannelData() - Constructor for class loci.formats.in.FV1000Reader.ChannelData

FV1000Reader.PlaneData - Class in loci.formats.in

FV1000Reader.PlaneData() - Constructor for class loci.formats.in.FV1000Reader.PlaneData

FW - Static variable in class ome.units.UNITS

G

g2D - Variable in class loci.poi.hssf.usermodel.DummyGraphics2d

G_SIZE - Static variable in class loci.common.CBZip2InputStream

gain - Variable in class loci.formats.in.BDReader

gain - Variable in class loci.formats.in.BioRadReader

gain - Variable in class loci.formats.in.BioRadSCNReader

gain - Variable in class loci.formats.in.CellSensReader.Pyramid

gain - Variable in class loci.formats.in.FV1000Reader.ChannelData

gain - Variable in class loci.formats.in.ImarisHDFReader

gain - Variable in class loci.formats.in.InCellReader

gain - Variable in class loci.formats.in.IvisionReader

gain - Variable in class loci.formats.in.LeicaHandler.Channel

gain - Variable in class loci.formats.in.MetamorphHandler

gain - Variable in class loci.formats.in.MetamorphReader

gain - Variable in class loci.formats.in.MicromanagerReader.Position

gain - Variable in class loci.formats.in.ND2Handler

gain - Variable in class loci.formats.in.NikonTiffReader

gain - Variable in class loci.formats.in.OpenlabReader

gain - Variable in class loci.formats.in.ZeissCZIReader.Channel

gain - Variable in class loci.formats.in.ZeissCZIReader

gain - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel

gain - Variable in class ome.xml.model.Detector

gain - Variable in class ome.xml.model.DetectorSettings

GAIN_CONTROL - Static variable in class loci.formats.tiff.IFD

GAIN_CONTROL_HIGH_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_HIGH_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_LOW_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_LOW_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_UNIT - Static variable in class loci.formats.in.CellSensReader

gains - Variable in class loci.formats.in.FluoviewReader

gains - Variable in class loci.formats.in.LIFReader

GAMMA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the third lifting step coefficient

GAMMA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the third lifting step coefficient

gamma - Variable in class loci.formats.in.GatanReader

gamma(double) - Method in class loci.plugins.util.RecordedImageProcessor

GAMMA_CORRECTION - Static variable in class loci.formats.in.CellSensReader

gammaBlue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

gammaGreen - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

gammaRed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

GatanDM2Reader - Class in loci.formats.in

GatanDM2Reader is the file format reader for Gatan .dm2 files.

GatanDM2Reader() - Constructor for class loci.formats.in.GatanDM2Reader

Constructs a new Gatan .dm2 reader.

GatanReader - Class in loci.formats.in

GatanReader is the file format reader for Gatan files.

GatanReader() - Constructor for class loci.formats.in.GatanReader

Constructs a new Gatan reader.

gb - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC

gb - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD

gb - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Number of guard bits off all component in the current tile.

gbs - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of guard bits specifications

gbs - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer

The number of guard bits spec

gbs - Variable in class jj2000.j2k.quantization.quantizer.StdQuantizer

The guard bits specifications

gcd(int, int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Greatest Common Divisor (GCD) of two positive integer numbers.

gcd(int[]) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Greatest Common Divisor (GCD) of several positive integer numbers.

gct - Variable in class loci.formats.in.GIFReader

Global color table.

GDI_SIGNATURE - Static variable in class ome.jxr.constants.Image

GEL_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the gel and blot imaging domain.

GelReader - Class in loci.formats.in

GelReader is the file format reader for Molecular Dynamics GEL TIFF files.

GelReader() - Constructor for class loci.formats.in.GelReader

Constructs a new GEL reader.

GENERAL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord

GENERAL_3I_MSG - Static variable in class loci.formats.in.SlideBook6Reader

generated - Variable in class loci.poi.hssf.record.TextRecord

generateRecords(String, String, String, String) - Static method in class loci.poi.dev.RecordGenerator

generateScreen(int, int, int, int, int) - Method in class loci.formats.tools.FakeImage

Creates a fake SPW file/directory structure.

GenericExcitationSource - Class in ome.xml.model

GenericExcitationSource() - Constructor for class ome.xml.model.GenericExcitationSource

Default constructor.

GenericExcitationSource(Element, OMEModel) - Constructor for class ome.xml.model.GenericExcitationSource

Constructs GenericExcitationSource recursively from an XML DOM tree.

GenericExcitationSource(GenericExcitationSource) - Constructor for class ome.xml.model.GenericExcitationSource

Copy constructor.

genericProcessEvents(HSSFRequest, RecordInputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a DocumentInputStream into essentially Record events.

GEOMETRY__3DOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST10VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST2VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST3VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST4VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST5VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST6VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST7VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST8VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUST9VALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__ADJUSTVALUE - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__BOTTOM - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__FILLOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__FILLSHADESHAPEOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__GEOTEXTOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__LEFT - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__LINEOK - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__RIGHT - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__SEGMENTINFO - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__SHADOWok - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__SHAPEPATH - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__TOP - Static variable in class loci.poi.ddf.EscherProperties

GEOMETRY__VERTICES - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__ALIGNMENTONCURVE - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__BOLDFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__CHARBOUNDINGBOX - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__DEFAULTPOINTSIZE - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__FONTFAMILYNAME - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__HASTEXTEFFECT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__ITALICFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__KERNCHARACTERS - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__NOMEASUREALONGPATH - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__REVERSEROWORDER - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__ROTATECHARACTERS - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__RTFTEXT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__SCALETEXTONPATH - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__SHADOWFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__SMALLCAPSFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__STRETCHCHARHEIGHT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__STRETCHTOFITSHAPE - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__STRIKETHROUGHFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__TEXTSPACING - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__TIGHTORTRACK - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__UNDERLINEFONT - Static variable in class loci.poi.ddf.EscherProperties

GEOTEXT__UNICODE - Static variable in class loci.poi.ddf.EscherProperties

GeoTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in a GeoTIFF IFD.

GeoTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

GeoTIFFTagSet.GeoAsciiParams - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.GeoAsciiParams() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.GeoAsciiParams

GeoTIFFTagSet.GeoDoubleParams - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.GeoDoubleParams() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.GeoDoubleParams

GeoTIFFTagSet.GeoKeyDirectory - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.GeoKeyDirectory() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.GeoKeyDirectory

GeoTIFFTagSet.ModelPixelScale - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.ModelPixelScale() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.ModelPixelScale

GeoTIFFTagSet.ModelTiePoint - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.ModelTiePoint() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.ModelTiePoint

GeoTIFFTagSet.ModelTransformation - Class in com.sun.media.imageio.plugins.tiff

GeoTIFFTagSet.ModelTransformation() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.ModelTransformation

get(int) - Method in class loci.formats.codec.ByteVector

get(int) - Static method in enum loci.formats.codec.CompressionType

Retrieves the compression by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.codec.JPEG2000BoxType

Retrieves the box type by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.codec.JPEG2000SegmentMarker

Retrieves the segment marker by reverse lookup of its "code".

get(int, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileCache

get(int) - Static method in enum loci.formats.in.BaseZeissReader.Charset

get(int) - Static method in enum loci.formats.in.BaseZeissReader.DrawStyle

get(int) - Static method in enum loci.formats.in.BaseZeissReader.FeatureType

get(int) - Static method in enum loci.formats.in.BaseZeissReader.FillStyle

get(int) - Static method in enum loci.formats.in.BaseZeissReader.LineEndPositions

get(int) - Static method in enum loci.formats.in.BaseZeissReader.LineEndStyle

get(int) - Static method in enum loci.formats.in.BaseZeissReader.PointStyle

get(int) - Static method in enum loci.formats.in.BaseZeissReader.TextAlignment

get(Object) - Method in interface loci.formats.in.PrairieMetadata.Value

get(int) - Method in interface loci.formats.in.PrairieMetadata.Value

get(Object) - Method in class loci.formats.in.PrairieMetadata.ValueItem

get(int) - Method in class loci.formats.in.PrairieMetadata.ValueItem

get(int) - Method in class loci.formats.in.PrairieMetadata.ValueTable

get(int) - Static method in enum loci.formats.tiff.IFDType

Retrieves a IFD type by reverse lookup of its "code".

get(int) - Method in class loci.formats.tiff.OnDemandLongArray

get(int) - Static method in enum loci.formats.tiff.PhotoInterp

Retrieves a photometric interpretation by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.tiff.TiffCompression

Retrieves a TIFF compression instance by code.

get(List<T>, int, T) - Method in class loci.plugins.in.ImporterOptions

get(int) - Method in class loci.plugins.util.RecordedImageProcessor

get(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

get(String) - Method in class loci.poi.hpsf.CustomProperties

Gets a named value from the custom properties.

get(long) - Method in class loci.poi.hpsf.wellknown.PropertyIDMap

Gets the ID string for an ID from the PropertyIDMap.

get(byte[]) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the PropertyIDMap for a given section format ID.

get(Object) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Deprecated.

Use SectionIDMap.get(byte[]) instead!

get(int) - Method in class loci.poi.hssf.model.WorkbookRecordList

get(Object) - Method in class loci.poi.util.BinaryTree

Returns the value to which this map maps the specified key.

get() - Method in class loci.poi.util.ByteField

get the ByteField's current value

get(int) - Method in class loci.poi.util.DoubleList

Returns the element at the specified position in this list.

get(int, int) - Method in class loci.poi.util.DoubleList2d

get() - Method in class loci.poi.util.IntegerField

get the IntegerField's current value

get(int) - Method in class loci.poi.util.IntList

Returns the element at the specified position in this list.

get(int, int) - Method in class loci.poi.util.IntList2d

get(int) - Method in class loci.poi.util.IntMapper

get(int, int) - Method in class loci.poi.util.List2d

get() - Method in class loci.poi.util.LongField

get the LongField's current value

get() - Method in class loci.poi.util.ShortField

get the ShortField's current value

get(int) - Method in class loci.poi.util.ShortList

Returns the element at the specified position in this list.

get(String) - Method in class loci.tests.testng.ConfigurationTree

Retrieves the Configuration object corresponding to the given file.

get(int) - Method in interface mdbtools.dbengine.Data

get the data at a certain column

get(int) - Method in class mdbtools.dbengine.MemoryData

get the data at a certain column

get(int) - Method in class mdbtools.dbengine.Tests.SimpleData

get123Prefix() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get some old holdover from lotus 123.

get16BitLookupTable() - Method in class loci.formats.ChannelFiller

get16BitLookupTable() - Method in class loci.formats.DelegateReader

get16BitLookupTable() - Method in class loci.formats.FileStitcher

get16BitLookupTable() - Method in class loci.formats.FormatReader

get16BitLookupTable() - Method in interface loci.formats.IFormatReader

Gets the 16-bit color lookup table associated with the most recently opened image.

get16BitLookupTable() - Method in class loci.formats.ImageReader

get16BitLookupTable() - Method in class loci.formats.in.BaseZeissReader

get16BitLookupTable() - Method in class loci.formats.in.DicomReader

get16BitLookupTable() - Method in class loci.formats.in.FakeReader

get16BitLookupTable() - Method in class loci.formats.in.FilePatternReader

get16BitLookupTable() - Method in class loci.formats.in.FV1000Reader

get16BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader

get16BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader

get16BitLookupTable() - Method in class loci.formats.in.InCellReader

get16BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader

get16BitLookupTable() - Method in class loci.formats.in.JPXReader

get16BitLookupTable() - Method in class loci.formats.in.LeicaReader

get16BitLookupTable() - Method in class loci.formats.in.LIFReader

get16BitLookupTable() - Method in class loci.formats.in.MIASReader

get16BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader

get16BitLookupTable() - Method in class loci.formats.in.NativeND2Reader

get16BitLookupTable() - Method in class loci.formats.in.OMETiffReader

get16BitLookupTable() - Method in class loci.formats.in.PDSReader

get16BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader

get16BitLookupTable() - Method in class loci.formats.in.ScreenReader

get16BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader

get16BitLookupTable() - Method in class loci.formats.in.TCSReader

get16BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader

get16BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader

get16BitLookupTable() - Method in class loci.formats.in.ZipReader

get16BitLookupTable() - Method in class loci.formats.ReaderWrapper

get26Sys(String) - Method in class loci.poi.hssf.util.RangeAddress

get8BitLookupTable() - Method in class loci.formats.ChannelFiller

get8BitLookupTable() - Method in class loci.formats.DelegateReader

get8BitLookupTable() - Method in class loci.formats.FileStitcher

get8BitLookupTable() - Method in class loci.formats.FormatReader

get8BitLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Converts an IndexColorModel to a 2D byte array.

get8BitLookupTable() - Method in interface loci.formats.IFormatReader

Gets the 8-bit color lookup table associated with the most recently opened image.

get8BitLookupTable() - Method in class loci.formats.ImageReader

get8BitLookupTable() - Method in class loci.formats.in.AmiraReader

get8BitLookupTable() - Method in class loci.formats.in.APNGReader

get8BitLookupTable() - Method in class loci.formats.in.AVIReader

get8BitLookupTable() - Method in class loci.formats.in.BaseZeissReader

get8BitLookupTable() - Method in class loci.formats.in.BioRadReader

get8BitLookupTable() - Method in class loci.formats.in.BMPReader

get8BitLookupTable() - Method in class loci.formats.in.CellH5Reader

get8BitLookupTable() - Method in class loci.formats.in.DicomReader

get8BitLookupTable() - Method in class loci.formats.in.FakeReader

get8BitLookupTable() - Method in class loci.formats.in.FilePatternReader

get8BitLookupTable() - Method in class loci.formats.in.GIFReader

get8BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader

get8BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader

get8BitLookupTable() - Method in class loci.formats.in.InCellReader

get8BitLookupTable() - Method in class loci.formats.in.IPWReader

get8BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader

get8BitLookupTable() - Method in class loci.formats.in.JPXReader

get8BitLookupTable() - Method in class loci.formats.in.KhorosReader

get8BitLookupTable() - Method in class loci.formats.in.LeicaReader

get8BitLookupTable() - Method in class loci.formats.in.LIFReader

get8BitLookupTable() - Method in class loci.formats.in.MIASReader

get8BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader

get8BitLookupTable() - Method in class loci.formats.in.NativeND2Reader

get8BitLookupTable() - Method in class loci.formats.in.OMETiffReader

get8BitLookupTable() - Method in class loci.formats.in.OpenlabReader

get8BitLookupTable() - Method in class loci.formats.in.PCXReader

get8BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader

get8BitLookupTable() - Method in class loci.formats.in.PictReader

get8BitLookupTable() - Method in class loci.formats.in.PSDReader

get8BitLookupTable() - Method in class loci.formats.in.ScreenReader

get8BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader

get8BitLookupTable() - Method in class loci.formats.in.TargaReader

get8BitLookupTable() - Method in class loci.formats.in.TCSReader

get8BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader

get8BitLookupTable() - Method in class loci.formats.in.ZeissLMSReader

get8BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader

get8BitLookupTable() - Method in class loci.formats.in.ZipReader

get8BitLookupTable() - Method in class loci.formats.ReaderWrapper

getA00() - Method in class ome.xml.model.AffineTransform

getA01() - Method in class ome.xml.model.AffineTransform

getA02() - Method in class ome.xml.model.AffineTransform

getA10() - Method in class ome.xml.model.AffineTransform

getA11() - Method in class ome.xml.model.AffineTransform

getA12() - Method in class ome.xml.model.AffineTransform

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

This method wraps the protected method abortRequested to allow the abortions be monitored by J2KReadState.

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

This method wraps the protected method abortRequested to allow the abortions be monitored by J2KRenderedImage.

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

This method wraps the protected method abortRequested to allow the abortions be monitored by J2KReadState.

getAbsoluteFile() - Method in class loci.common.Location

getAbsolutePath() - Method in class loci.common.Location

getAbsoluteTime() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the absoluteTime associated with this Frame.

getAccessTimeMillis() - Method in class loci.tests.testng.Configuration

getAcquisitionDate() - Method in class ome.xml.model.Image

getAcquisitionMode(String) - Method in class loci.formats.FormatReader

Retrieves an AcquisitionMode enumeration value for the given String.

getAcquisitionMode() - Method in class ome.xml.model.Channel

getActiveCellCol() - Method in class loci.poi.hssf.model.Sheet

Returns the active column

getActiveCellCol() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's col

getActiveCellRef() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's reference number

getActiveCellRow() - Method in class loci.poi.hssf.model.Sheet

Returns the active row

getActiveCellRow() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's row

getActiveChannels() - Method in class loci.formats.in.PrairieMetadata

Gets the list of active channel indices, in sorted order.

getActivePane() - Method in class loci.poi.hssf.record.PaneRecord

Get the active pane field for the Pane record.

getActivePane() - Method in class loci.poi.hssf.util.PaneInformation

Returns the active pane

getActualNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the actual number of read bytes.

getActualRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the actual decoding rate in bits per pixel.

getActualSizeOfElements(short) - Static method in class loci.poi.ddf.EscherArrayProperty

Sometimes the element size is stored as a negative number.

getAddMenuCount() - Method in class loci.poi.hssf.record.MMSRecord

get number of add menu options (should be 0)

getAddress() - Method in class loci.poi.hssf.util.RangeAddress

getAdjustedIndex(int) - Method in class loci.formats.FileStitcher

Gets the local reader index for use with the given image plane.

getAdjustedOrder() - Method in class loci.formats.AxisGuesser

Gets the adjusted dimension order.

getAdtlDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get for diagonal borders? No idea (its a palette color for the other function we didn't know what was?)

getAdtlDiagLineStyle() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the diagonal border line style? Who the heck ever heard of a diagonal border?

getAdtlFillPattern() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the additional fill pattern

getAdtlPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the additional palette options bitmask (see individual bit getter methods that reference this method)

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader

getAdvancedSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of FileInfo objects representing the files needed to open the current series.

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getAdvancedUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getAdvancedUsedFiles(boolean) - Method in class loci.formats.FormatReader

getAdvancedUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of FileInfo objects representing the files needed to open this dataset.

getAdvancedUsedFiles(boolean) - Method in class loci.formats.ImageReader

getAdvancedUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getAirPressure() - Method in class ome.xml.model.ImagingEnvironment

getAirPressureUnitXsdDefault() - Static method in class ome.xml.model.ImagingEnvironment

getAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the horizontal alignment of the cell.

getAlignment() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of horizontal alignment for the cell

getAlignmentOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the alignment options bitmask.

getAlignROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets alignROI

getAllChildren(Integer) - Method in class loci.formats.in.VolocityReader

getAllCodeBlocks() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

This method gets all the coded code-blocks from the EBCOT entropy coder for every component and every tile.

getAllEmbeddedObjects() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all embedded OLE2 objects from the Workbook.

getAllEmbeddedObjects(List, List) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all embedded OLE2 objects from the Workbook.

getAllFiles(String) - Method in class loci.formats.FilePattern

getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory

getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.

getAllNodes(IIOMetadataNode, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

getAllowedTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns a List containing the allowed TIFFTagSet objects.

getAllPictures() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all pictures from the Workbook.

getAlpha(int) - Method in class loci.formats.gui.Index16ColorModel

getAlpha(int) - Method in class loci.formats.gui.SignedColorModel

getAlpha(Object) - Method in class loci.formats.gui.SignedColorModel

getAlpha(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getAlpha(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getAlpha() - Method in class ome.xml.model.primitives.Color

Returns the alpha component of this color.

getAlphaBandPresence() - Method in class ome.jxr.ifd.IFDMetadata

getAlphaByteCount() - Method in class ome.jxr.ifd.IFDMetadata

getAlphaOffset() - Method in class ome.jxr.ifd.IFDMetadata

getAlphas() - Method in class loci.formats.gui.Index16ColorModel

Return the array of alpha color components.

getAlternateExpression() - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternate expression evaluation is on

getAlternateExpression() - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternate expression evaluation is on

getAlternateFormula() - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternative formula entry is on

getAlternateFormula() - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternative formula entry is on

getAlternateMD5() - Method in class loci.tests.testng.Configuration

getAmplificationGain() - Method in class ome.xml.model.Detector

getAnchor() - Method in class loci.poi.hssf.usermodel.HSSFShape

getAnchorHeightInPoints(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Calculates the height of a client anchor in points.

getAnchorId() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the anchor id field for the ObjectLink record.

getAnchorType() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Gets the anchor type

getAndMoveToFrontDecode() - Method in class loci.common.CBZip2InputStream

getAndMoveToFrontDecode0(int) - Method in class loci.common.CBZip2InputStream

getAndMoveToFrontDecodeYY - Variable in class loci.common.CBZip2InputStream.Data

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the high-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the low-pass analysis filter.

getAnnotator() - Method in class ome.xml.model.Annotation

getAnSubbandTree(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns a reference to the root of subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns a reference to the root of subband tree structure representing the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns a reference to the subband tree structure representing the subband decomposition for the specified tile-component of the source.

getApplicationName() - Method in class loci.poi.hpsf.SummaryInformation

Returns the application name (or null).

getApproximationAccuracy() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns ApproximationAccuracy.

getArabic() - Method in class loci.poi.hssf.record.WindowTwoRecord

is this arabic?

getArcAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getArcAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Arc.

getArcAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcID(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Arc.

getArcID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Arc.

getArcLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Arc.

getArcManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Arc.

getArcModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcPower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcPower(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcPower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of Arc.

getArcPower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Arc.

getArcSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArcType(String) - Method in class loci.formats.FormatReader

Retrieves an ArcType enumeration value for the given String.

getArcType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getArcType(int, int) - Method in class ome.xml.meta.DummyMetadata

getArcType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Arc.

getArcType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getArea() - Method in class loci.poi.hssf.util.Region

getAreaAt(int) - Method in class loci.poi.hssf.record.MergeCellsRecord

return the MergedRegion at the given index.

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaAPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNAPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNVPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaPtg

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaVPtg

getAreaReference(Workbook) - Method in class loci.poi.hssf.record.NameRecord

gets the reference , the area only (range)

getArgument() - Method in class mdbtools.dbengine.sql.FunctionDef

getArray(String, int[], int[]) - Method in interface loci.formats.services.NetCDFService

Retrieves an HDF path's values.

getArray(String, int[], int[]) - Method in class loci.formats.services.NetCDFServiceImpl

getArtistName() - Method in class ome.jxr.ifd.IFDMetadata

getAsBytes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the data as an uninterpreted array of bytes.

getAsChars() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SHORT data as an array of chars (unsigned 16-bit integers).

getAsDouble(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a double.

getAsDoubles() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_DOUBLE data as an array of doubles (64-bit floating-point values).

getAsFloat(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a float.

getAsFloats() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_FLOAT data as an array of floats (32-bit floating-point values).

getAsInt(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as an int.

getAsInts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SLONG data as an array of ints (signed 32-bit integers).

getAsLong(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a long.

getAsLongs() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_LONG or TIFF_IFD_POINTER data as an array of longs (signed 64-bit integers).

getAsMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Converts the directory to a metadata object.

getAsNativeNode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the TIFFField as a node named either "TIFFField" or "TIFFIFD" as described in the TIFF native image metadata specification.

getAsRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_RATIONAL data item as a two-element array of ints.

getAsRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_RATIONAL data as an array of 2-element arrays of longs.

getAsShorts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SSHORT data as an array of shorts (signed 16-bit integers).

getAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the association which associates a color channel to a color component in the color space of the image.

getAsSRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_SRATIONAL data item as a two-element array of ints.

getAsSRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SRATIONAL data as an array of 2-element arrays of ints.

getAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_ASCII value as a String.

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getAttenuation() - Method in class ome.xml.model.LightSourceSettings

getAttribute(Node, String) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

getAttribute(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the attribute from the node.

getAttribute(Node, String, String, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getAttribute(Node, String, String, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Extracts the value of the attribute from name.

getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getAttributeDataType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeDefaultValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeDescription(String, String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeEnumerations(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeList() - Method in interface loci.formats.services.NetCDFService

Retrieves an exhaustive list of the HDF paths for all attributes in the HDF document.

getAttributeList() - Method in class loci.formats.services.NetCDFServiceImpl

getAttributeListMaxLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeListMinLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeMaxValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeMinValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributeNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttributes() - Method in class loci.poi.hssf.record.FontRecord

get the font attributes (see individual bit getters that reference this method)

getAttributeValue(String) - Method in interface loci.formats.services.NetCDFService

Retrieves an attribute's value.

getAttributeValue(String) - Method in class loci.formats.services.NetCDFServiceImpl

getAttributeValueType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAttrInfo(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Returns the author (or null).

getAuthor() - Method in class loci.poi.hssf.record.NoteRecord

Name of the original comment author

getAuthor() - Method in class loci.poi.hssf.usermodel.HSSFComment

Name of the original comment author

getAutobreaks() - Method in class loci.poi.hssf.record.WSBoolRecord

show automatic page breaks or not

getAutobreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

show automatic page breaks or not

getAutoContinue() - Method in class loci.poi.hssf.record.RecordInputStream

getAutoscaleInfo() - Method in class loci.plugins.in.ImporterOptions

getAutoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

getAutoThreshold(int[]) - Method in class loci.plugins.util.RecordedImageProcessor

getAvailableMemory() - Method in class loci.plugins.in.MemoryDialog

getAxisCount(int) - Method in class loci.formats.AxisGuesser

Gets the number of axes in the pattern of the given type.

getAxisCountC() - Method in class loci.formats.AxisGuesser

Gets the number of C axes in the pattern.

getAxisCountS() - Method in class loci.formats.AxisGuesser

Gets the number of S axes in the pattern.

getAxisCountT() - Method in class loci.formats.AxisGuesser

Gets the number of T axes in the pattern.

getAxisCountZ() - Method in class loci.formats.AxisGuesser

Gets the number of Z axes in the pattern.

getAxisGuesser() - Method in class loci.formats.FileStitcher.ExternalSeries

getAxisGuesser() - Method in class loci.formats.FileStitcher

Gets the axis guesser object used to guess which dimensional axes are which.

getAxisType(String) - Static method in class loci.formats.AxisGuesser

Returns a best guess of the given label's axis type.

getAxisType() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Get the axis type field for the AxisLineFormat record.

getAxisType() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the axis type field for the AxisParent record.

getAxisType() - Method in class loci.poi.hssf.record.AxisRecord

Get the axis type field for the Axis record.

getAxisTypes() - Method in class loci.formats.AxisGuesser

Gets the guessed axis type for each dimensional block.

getAxisTypes() - Method in class loci.formats.FileStitcher

Gets the axis type for each dimensional block.

getBackcolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the backcolor index field for the AreaFormat record.

getBackground() - Method in class loci.poi.hssf.record.TickRecord

Get the background field for the Tick record.

getBackground() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getBackgroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the background color field for the AreaFormat record.

getBackgroundValue() - Method in class loci.plugins.util.RecordedImageProcessor

getBackup() - Method in class loci.poi.hssf.record.BackupRecord

get the backup flag

getBackupFlag() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

determine whether the Excel GUI will backup the workbook when saving.

getBackuppos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getBackupRecord() - Method in class loci.poi.hssf.model.Workbook

Returns the position of the backup record.

getBadFontHeight() - Method in class loci.poi.hssf.record.RowRecord

get whether the font and row height are not compatible

getBandSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getBarSpace() - Method in class loci.poi.hssf.record.BarRecord

Get the bar space field for the Bar record.

getBaseReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getBaseUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the base unit field for the AxisOptions record.

getBaseUnit(UnitsElectricPotential) - Static method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getBaseUnit(UnitsFrequency) - Static method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getBaseUnit(UnitsLength) - Static method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getBaseUnit(UnitsPower) - Static method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getBaseUnit(UnitsPressure) - Static method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getBaseUnit(UnitsTemperature) - Static method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getBaseUnit(UnitsTime) - Static method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getBATArray() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getBATCount() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getBestIndex(Color) - Method in class loci.plugins.util.RecordedImageProcessor

getBigBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

getBigBlockSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

getBigBlockSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument

getBigBlockSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

getBigBlockSize() - Method in class loci.poi.poifs.storage.BATBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.BigBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.DocumentBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.HeaderBlockWriter

getBigBlockSize() - Method in class loci.poi.poifs.storage.PropertyBlock

getBigBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlockList

getBigBlockSize() - Method in class loci.poi.poifs.storage.SmallDocumentBlock

getBigEndian() - Method in class ome.xml.model.BinData

getBigEndian() - Method in class ome.xml.model.Pixels

getBinaryFile() - Method in class ome.xml.model.FileAnnotation

getBinaryFileFileName(int) - Method in class ome.xml.meta.AggregateMetadata

getBinaryFileFileName(int) - Method in class ome.xml.meta.DummyMetadata

getBinaryFileFileName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FileName property of BinaryFile.

getBinaryFileFileName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinaryFileMIMEType(int) - Method in class ome.xml.meta.AggregateMetadata

getBinaryFileMIMEType(int) - Method in class ome.xml.meta.DummyMetadata

getBinaryFileMIMEType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MIMEType property of BinaryFile.

getBinaryFileMIMEType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinaryFileSize(int) - Method in class ome.xml.meta.AggregateMetadata

getBinaryFileSize(int) - Method in class ome.xml.meta.DummyMetadata

getBinaryFileSize(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Size property of BinaryFile.

getBinaryFileSize(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinaryOnly() - Method in class ome.xml.model.OME

getBinaryOnlyMetadataFile() - Method in class ome.xml.meta.AggregateMetadata

getBinaryOnlyMetadataFile() - Method in class ome.xml.meta.DummyMetadata

getBinaryOnlyMetadataFile() - Method in interface ome.xml.meta.MetadataRetrieve

Get the MetadataFile property of BinaryOnly.

getBinaryOnlyMetadataFile() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinaryOnlyUUID() - Method in class ome.xml.meta.AggregateMetadata

getBinaryOnlyUUID() - Method in class ome.xml.meta.DummyMetadata

getBinaryOnlyUUID() - Method in interface ome.xml.meta.MetadataRetrieve

Get the UUID property of BinaryOnly.

getBinaryOnlyUUID() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBinData() - Method in class ome.xml.model.BinaryFile

getBinData(int) - Method in class ome.xml.model.Mask

getBinData(int) - Method in class ome.xml.model.Pixels

getBinning(String) - Method in class loci.formats.FormatReader

Retrieves an Binning enumeration value for the given String.

getBinning() - Method in class loci.formats.in.MetamorphHandler

getBinning() - Method in class ome.xml.model.DetectorSettings

getBinnings() - Method in class loci.formats.in.ND2Handler

getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Returns the bit depths for all the image components.

getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the bit depth for all the image components.

getBitDepth() - Method in class loci.formats.in.PrairieMetadata

Gets the bitDepth recorded in the configuration.

getBitDepths() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the bit depths for all the color components.

getBitOffset() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getBits(int) - Method in class loci.formats.codec.BitBuffer

Deprecated.

Returns an int value representing the value of the bits read from the byte array, from the current position.

getBits() - Method in enum ome.jxr.ifd.PixelType

getBitsPerPixel(SampleModel) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Returns the number of bits per pixel.

getBitsPerPixel() - Method in class loci.formats.FileStitcher

getBitsPerPixel() - Method in class loci.formats.FormatReader

getBitsPerPixel() - Method in interface loci.formats.IFormatReader

Gets the number of valid bits per pixel.

getBitsPerPixel() - Method in class loci.formats.ImageReader

getBitsPerPixel() - Method in class loci.formats.in.FilePatternReader

getBitsPerPixel(int) - Method in class loci.formats.in.OBFReader

getBitsPerPixel() - Method in class loci.formats.ReaderWrapper

getBitsPerPixel() - Method in class ome.jxr.ifd.IFDMetadata

getBitsPerSample() - Method in class loci.formats.tiff.IFD

Retrieves the image's bits per sample (TIFF tag BitsPerSample) from a given TIFF IFD.

getBlankThumbBytes() - Method in class loci.formats.FileStitcher.ExternalSeries

getBlipRecord() - Method in class loci.poi.ddf.EscherBSERecord

getBlipType(byte) - Method in class loci.poi.ddf.EscherBSERecord

Retrieve the string representation given a blip id.

getBlipType(byte) - Method in class loci.poi.ddf.EscherDump

Returns the blip description given a blip id.

getBlipTypeMacOS() - Method in class loci.poi.ddf.EscherBSERecord

The expected blip type under MacOS (failure to match this blip type will result in Excel converting to this format).

getBlipTypeWin32() - Method in class loci.poi.ddf.EscherBSERecord

The expected blip type under windows (failure to match this blip type will result in Excel converting to this format).

getBlock(int) - Method in class loci.formats.FilePattern

Gets the specified numerical block.

getBlock() - Method in class loci.formats.FilePatternBlock

getBlock(int, String) - Method in class loci.formats.in.ScanrReader

getBlockAligned() - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function returns the blockAligned flag

getBlocks() - Method in class loci.formats.FilePattern

Gets each numerical block.

getBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument.BigBlockStore

getBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument.SmallBlockStore

getBlocks() - Method in class loci.poi.poifs.storage.RawDataBlockList

getBlocks() - Method in class loci.poi.poifs.storage.SmallDocumentBlockList

getBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlock

getBlue(int) - Method in class loci.formats.gui.Index16ColorModel

getBlue(int) - Method in class loci.formats.gui.SignedColorModel

getBlue(Object) - Method in class loci.formats.gui.SignedColorModel

getBlue(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getBlue(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getBlue() - Method in class loci.poi.ddf.EscherRGBProperty

getBlue() - Method in class ome.xml.model.primitives.Color

Returns the blue component of this color.

getBlueOffset(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

For the given pixel format, returns the number of bytes that the blue component is offset from the start of the pixel.

getBlues() - Method in class loci.formats.gui.Index16ColorModel

Return the array of blue color components.

getBoldWeight() - Method in class loci.poi.hssf.record.FontRecord

get the bold weight for this font (100-1000dec or 0x64-0x3e8).

getBoldweight() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the boldness to use

getBoolean(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the boolean type attribute.

getBooleanAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getBooleanAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a BooleanAnnotation.

getBooleanAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of BooleanAnnotation.

getBooleanAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of BooleanAnnotation.

getBooleanAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of BooleanAnnotation elements.

getBooleanAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of BooleanAnnotation.

getBooleanAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of BooleanAnnotation.

getBooleanAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of BooleanAnnotation.

getBooleanAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getBooleanAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getBooleanAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of BooleanAnnotation.

getBooleanAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getBooleanAttribute(Node, String, boolean, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getBooleanAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getBooleanCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a boolean.

getBooleanOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the boolean option with the given key.

getBooleanValue(String) - Method in class loci.plugins.Slicer

Gets the value of the given macro key as a boolean.

getBooleanValue() - Method in class loci.poi.hssf.record.BoolErrRecord

get the value for the cell

getBorderBottom() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the bottom border

getBorderBottom() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the bottom border of the cell

getBorderLeft() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the left border

getBorderLeft() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the left border of the cell

getBorderOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the border options bitmask (see the corresponding bit getter methods that reference back to this one)

getBorderRight() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the right border

getBorderRight() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the right border of the cell

getBorderTop() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the top border

getBorderTop() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the top border of the cell

getBorderType() - Method in class loci.poi.hssf.record.FrameRecord

Get the border type field for the Frame record.

getBottomBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getBottomBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the bottom border

getBoundaryHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the boundary height of the metafile drawing commands

getBoundaryLeft() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the left boundary of the metafile drawing commands

getBoundaryTop() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the top boundary of the metafile drawing commands

getBoundaryWidth() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the boundary width of the metafile drawing commands

getBounds() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns a Rectangle indicating the image bounds.

getBounds(BigInteger[], boolean) - Static method in class loci.formats.FilePattern

Gets a string containing start, end and step values for a sorted list of numbers.

getBounds() - Method in class loci.poi.ddf.EscherMetafileBlip

getBounds() - Method in class loci.poi.ddf.EscherPictBlip

getBoundWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFCell

Returns the Workbook that this Cell is bound to

getBoxClass(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the Box class for the box with the provided type.

getBranchIndex(Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getBrand() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the brand of this file type box.

getBreak(short) - Method in class loci.poi.hssf.record.PageBreakRecord

Retrieves the region at the row/column indicated

getBreaksIterator() - Method in class loci.poi.hssf.record.PageBreakRecord

getBSERecord(int) - Method in class loci.poi.hssf.model.Workbook

getBspos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getBubbleSeriesType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the bubble series type field for the Series record.

getBucketAbsoluteOffsets() - Method in class loci.poi.hssf.record.SSTSerializer

getBucketRelativeOffsets() - Method in class loci.poi.hssf.record.SSTSerializer

getBucketSSTOffset() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getBuffer() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Returns the byte buffer.

getBuffer() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the byte-buffer used to store the codestream header.

getBufferedImage() - Method in class loci.plugins.util.RecordedImageProcessor

getBufferLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the number of bytes used in the codestream header's buffer.

getBufferSize() - Method in class loci.common.NIOFileHandle

Gets the current buffer size.

getBuild() - Method in class loci.poi.hssf.record.BOFRecord

get the build that wrote this file

getBuildDate(String[]) - Method in class loci.plugins.macro.LociFunctions

getBuildYear() - Method in class loci.poi.hssf.record.BOFRecord

Year of the build that wrote this file

getBuiltin() - Method in class loci.poi.hssf.record.StyleRecord

if this is a builtin style get the number of the built in style

getBuiltinFormat(String) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format index that matches the given format string

getBuiltinFormat(short) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format string that matches the given format index

getBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

getBuiltInName() - Method in class loci.poi.hssf.record.NameRecord

Gets the Built In Name

getBypass() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets bypass

getByte(int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Returns the byte buffered at the given position in the buffer.

getByteArray(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the integer type attribute.

getByteArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

Copy a portion of a byte array

getByteArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets the byte array from an IIOMetadataNode.

getByteBuffer() - Method in class loci.common.ByteArrayHandle

Gets the byte buffer backing this handle.

getByteBuffer() - Method in class loci.formats.codec.BitBuffer

Deprecated.

Return the backing byte array.

getByteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the byte count or 0 if the DocumentSummaryInformation does not contain a byte count.

getByteElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its byte value from an IIOMetadataNode.

getByteInputBuffer() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Returns the underlying 'ByteInputBuffer' from where the MQ coded input bytes are read.

getByteOrder() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getByteOrder() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "byte order" field.

getByteOrder() - Method in class loci.poi.hpsf.SpecialPropertySet

getByteOrdering() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataInput

Returns the endianess (i.e., byte ordering) of the implementing class.

getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataOutput

Returns the endianness (i.e., byte ordering) of the implementing class.

getByteOrdering() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the endianess (i.e., byte ordering) of the implementing class.

getByteOrdering() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the endianess (i.e., byte ordering) of multi-byte I/O operations.

getBytes() - Method in class loci.common.ByteArrayHandle

Gets the byte array backing this FileHandle.

getBytes(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Get the bytes from an image, merging the channels as necessary.

getBytes() - Method in class loci.poi.hpsf.ClassID

Gets the bytes making out the class ID.

getBytes() - Method in class loci.poi.hssf.record.formula.Ptg

getBytes() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Method getBytes - get the bytes of just the HSSF portions of the XLS file.

getBytesPerElement() - Method in enum loci.formats.tiff.IFDType

Retrieves the number of bytes per element.

getBytesPerPixel(int) - Static method in class loci.formats.FormatTools

Retrieves how many bytes per pixel the current plane or section has.

getBytesPerPixel(String) - Static method in class loci.formats.FormatTools

Retrieves the number of bytes per pixel in the current plane.

getBytesPerPixel(int) - Method in class loci.formats.in.LegacyND2Reader

getBytesPerPixel(int) - Method in class loci.formats.in.SlideBook6Reader

getBytesPerSample() - Method in class loci.formats.tiff.IFD

Retrieves the image's bytes per sample (derived from tag BitsPerSample) from this IFD.

getByteValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getC() - Method in class loci.formats.gui.ImageViewer

Gets the C value of the currently displayed image.

getCache() - Method in class loci.formats.gui.CacheComponent

getCache() - Method in class loci.plugins.util.BFVirtualStack

getCacheListeners() - Method in class loci.formats.cache.Cache

getCacheListeners() - Method in interface loci.formats.cache.CacheReporter

Gets a list of all registered status update listeners.

getCacheListeners() - Method in class loci.formats.cache.CacheStrategy

getCacheOfSavedSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the cache of the saved size

getCacheOfSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the cache of the metafile size

getCalcMode() - Method in class loci.poi.hssf.record.CalcModeRecord

get the calc mode flag for formulas

getCalibratedMagnification() - Method in class ome.xml.model.Objective

getCalibrationTable() - Method in class loci.plugins.util.RecordedImageProcessor

getCameraModel() - Method in class loci.formats.in.ND2Handler

getCanonicalFile() - Method in class loci.common.Location

getCanonicalId() - Method in enum ome.jxr.ifd.PixelFormat

getCanonicalPath() - Method in class loci.common.Location

Returns the canonical path to this file.

getCategory() - Method in class loci.formats.in.BaseZeissReader.Tag

getCategory() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the category (or null).

getCategoryAxisCross() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the category axis cross field for the ValueRange record.

getCategoryDataType() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Get the category data type field for the DefaultDataLabelTextProperties record.

getCategoryDataType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the category data type field for the Series record.

getCategorySpace() - Method in class loci.poi.hssf.record.BarRecord

Get the category space field for the Bar record.

getCausalCXInfo() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets causalCXInfo

getCBegin(int) - Method in class loci.plugins.in.ImporterOptions

getCBegin(int) - Method in class loci.plugins.in.ImportProcess

getCBlkHeight(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the code-block height: for the specified tile/component for the specified tile for the specified component default value The value returned depends on the value of the variable 'type' which can take the following values : SPEC_DEF -> Default value is returned.

getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the code-block height for the specified tile and component.

getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the code-block height for the specified tile and component.

getCBlkInfo() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Gets the reference to the CBlkInfo array

getCBlkWidth(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the code-block width : for the specified tile/component for the specified tile for the specified component default value The value returned depends on the value of the variable 'type' which can take the following values :
SPEC_DEF -> Default value is returned.

getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the code-block width for the specified tile and component.

getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the code-block width for the specified tile and component.

getCbULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical code-block partition origin.

getCbULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the horizontal code-block partition origin.Allowable values are 0 and 1, nothing else.

getCbULX() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the horizontal code-block partition origin.

getCbULX() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the horizontal code-block partition origin.

getCbULX() - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the horizontal code-block partition origin.

getCbULX() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the horizontal code-block partition origin.

getCbULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the vertical code-block partition origin.

getCbULY() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the vertical offset of the code-block partition.

getCbULY() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the vertical code-block partition origin Allowable values are 0 and 1, nothing else.

getCCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

get the hssfcell representing a given column (logical cell) 0-based.

getCellComment() - Method in class loci.poi.hssf.usermodel.HSSFCell

Returns comment associated with this cell

getCellComment(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns cell comment for the specified row and column

getCellFormula() - Method in class loci.poi.hssf.usermodel.HSSFCell

getCellNum() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the cell's number within the row

getCellOffsetAt(int) - Method in class loci.poi.hssf.record.DBCellRecord

return the cell offset in the array

getCellOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

gets the options bitmask - you can also use corresponding option bit getters (see other methods that reference this one)

getCells() - Method in class loci.poi.hssf.util.AreaReference

return the cell references that define this area

getCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the style for the cell.

getCellStyleAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the cell style object at the given index

getCellType() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the cells type (numeric, formula or string)

getCellValueRecord() - Method in class loci.poi.hssf.usermodel.HSSFCell

Should only be used by HSSFSheet and friends.

getCEnd(int) - Method in class loci.plugins.in.ImporterOptions

getCEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCenter() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the center of the footer.

getCenter() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the center of the header.

getChannel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the defined channels.

getChannel(String) - Method in class loci.formats.in.CellomicsReader

getChannel() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the channel associated with this File.

getChannel(int) - Method in class loci.formats.in.ZeissTIFFReader

getChannel(int) - Method in class ome.xml.model.Pixels

getChannelAcquisitionMode(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelAcquisitionMode(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelAcquisitionMode(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AcquisitionMode property of Channel.

getChannelAcquisitionMode(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Channel.

getChannelAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Channel.

getChannelAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelColor(int) - Method in class loci.formats.in.LIFReader

getChannelColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Color property of Channel.

getChannelColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelColorFromFile(String) - Method in class loci.formats.in.MIASReader

Get the color associated with the given file's channel.

getChannelColors() - Method in class loci.formats.in.ND2Handler

getChannelContrastMethod(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelContrastMethod(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelContrastMethod(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ContrastMethod property of Channel.

getChannelContrastMethod(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelCount() - Method in class loci.formats.in.SDTReader

Gets the number of spectral channels.

getChannelCount() - Method in class loci.tests.testng.Configuration

getChannelCount(int) - Method in class ome.xml.meta.AggregateMetadata

getChannelCount(int) - Method in class ome.xml.meta.DummyMetadata

getChannelCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Channel elements.

getChannelCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelDescriptionNodes(Element) - Method in class loci.formats.in.LIFReader

getChannelDimCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getChannelDimLength(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions

getChannelDimType(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions

getChannelEmissionWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelEmissionWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelEmissionWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the EmissionWavelength property of Channel.

getChannelEmissionWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelExcitationWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelExcitationWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelExcitationWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExcitationWavelength property of Channel.

getChannelExcitationWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelFiller() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getChannelFilterSetRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelFilterSetRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelFilterSetRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FilterSetRef property of Channel.

getChannelFilterSetRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelFluor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelFluor(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelFluor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Fluor property of Channel.

getChannelFluor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelGlobalMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves a specified channel's global maximum.

getChannelGlobalMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves a specified channel's global minimum.

getChannelID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelID(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Channel.

getChannelID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelIlluminationType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelIlluminationType(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelIlluminationType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the IlluminationType property of Channel.

getChannelIlluminationType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelIndex(Element) - Method in class loci.formats.in.LIFReader

getChannelIndexOfCellObjectName(String) - Method in class loci.formats.in.CellH5Reader

getChannelKnownMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the specified channel's maximum based on the images that have been read.

getChannelKnownMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the specified channel's minimum based on the images that have been read.

getChannelLabel(int) - Method in class loci.formats.in.TextReader

Gets the label for the given channel.

getChannelLightSourceSettingsAttenuation(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelLightSourceSettingsAttenuation(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelLightSourceSettingsAttenuation(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Attenuation property of LightSourceSettings.

getChannelLightSourceSettingsAttenuation(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelLightSourceSettingsID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelLightSourceSettingsID(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelLightSourceSettingsID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of LightSourceSettings.

getChannelLightSourceSettingsID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelLightSourceSettingsWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelLightSourceSettingsWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelLightSourceSettingsWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Wavelength property of LightSourceSettings.

getChannelLightSourceSettingsWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getChannelName() - Method in class loci.formats.in.MetamorphHandler

getChannelName() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the channelName associated with this File.

getChannelName(int, int) - Method in class loci.formats.in.SlideBook6Reader

getChannelName(int) - Method in class loci.tests.testng.Configuration

getChannelName(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelName(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Channel.

getChannelName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelNames() - Method in class loci.formats.in.ND2Handler

getChannelNDFilter(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelNDFilter(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelNDFilter(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the NDFilter property of Channel.

getChannelNDFilter(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelPinholeSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelPinholeSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelPinholeSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PinholeSize property of Channel.

getChannelPinholeSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelPockelCellSetting(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelPockelCellSetting(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelPockelCellSetting(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PockelCellSetting property of Channel.

getChannelPockelCellSetting(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannels(int) - Method in class loci.formats.in.LegacyND2Reader

getChannelSamplesPerPixel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getChannelSamplesPerPixel(int, int) - Method in class ome.xml.meta.DummyMetadata

getChannelSamplesPerPixel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SamplesPerPixel property of Channel.

getChannelSamplesPerPixel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getChannelSeparator() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getChar(int) - Method in class loci.formats.tools.AsciiImage

GetChar() - Method in class loci.poi.hssf.model.FormulaParser

Read New Character From Input Stream

getCharacterPos() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

getCharCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the character count or 0 if the SummaryInformation does not contain a char count.

getCharCount() - Method in class loci.poi.hssf.record.UnicodeString

get the number of characters in the string

getCharPart(String) - Method in class loci.poi.hssf.util.RangeAddress

getCharset() - Method in class loci.poi.hssf.record.FontRecord

get the character set

getCharSet() - Method in class loci.poi.hssf.usermodel.HSSFFont

get character-set to use.

getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Get the chart group index field for the SeriesChartGroupIndex record.

getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Get the chart group index field for the SeriesToChartGroup record.

getCharWidth(char) - Method in class loci.poi.hssf.usermodel.FontDetails

Retrieves the width of the specified character.

getCheckboxes(GenericDialog) - Static method in class loci.plugins.util.WindowTools

getChild(Element, String) - Static method in class loci.formats.in.CellVoyagerReader

getChild(Element, String[]) - Static method in class loci.formats.in.CellVoyagerReader

getChild() - Method in class loci.plugins.util.RecordedImageProcessor

getChild(int) - Method in class loci.poi.ddf.EscherRecord

Returns the indexed child record.

getChild(int) - Method in class loci.poi.hssf.model.Node

getChildById(short) - Method in class loci.poi.ddf.EscherContainerRecord

getChildIndex(Integer, String) - Method in class loci.formats.in.VolocityReader

getChildIndex() - Method in class loci.poi.poifs.property.Property

Get the child property (its index in the Property Table)

getChildNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getChildNode(Node, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getChildNodes(Element) - Method in class loci.formats.in.OBFReader

getChildPolicy(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getChildRecords() - Method in class loci.poi.ddf.EscherContainerRecord

getChildRecords() - Method in class loci.poi.ddf.EscherRecord

getChildRecords() - Method in class loci.poi.ddf.UnknownEscherRecord

getChildren(Element, String) - Static method in class loci.formats.in.CellVoyagerReader

getChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Returns a list of all shapes contained by the patriarch.

getChildren() - Method in interface loci.poi.hssf.usermodel.HSSFShapeContainer

getChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Return all children contained by this shape.

getChildren() - Method in class loci.poi.poifs.property.DirectoryProperty

Get an iterator over the children of this Parent; all elements are instances of Property.

getChildren() - Method in interface loci.poi.poifs.property.Parent

Get an iterator over the children of this Parent; all elements are instances of Property.

getChildrenByTagName(Element, String) - Static method in class ome.xml.model.AbstractOMEModelObject

Retrieves all the children of an element that have a given tag name.

getChildText(Element, String[]) - Static method in class loci.formats.in.CellVoyagerReader

getChildText(Element, String) - Static method in class loci.formats.in.CellVoyagerReader

getChoices(GenericDialog) - Static method in class loci.plugins.util.WindowTools

getClasses() - Method in class loci.formats.ClassList

Gets the list of classes as an array.

getClassID() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "class ID" field.

getClassID() - Method in class loci.poi.hpsf.SpecialPropertySet

getClip() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getClipboardFormat() - Method in class loci.poi.hpsf.Thumbnail

Returns an int representing the Clipboard Format

getClipboardFormatTag() - Method in class loci.poi.hpsf.Thumbnail

Returns an int representing the Clipboard Format Tag

getClipBounds() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClipBounds(Rectangle) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getClipRect() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getClipRect() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getCO2Percent() - Method in class ome.xml.model.ImagingEnvironment

getCode() - Method in interface loci.common.enumeration.CodedEnum

Retrieves the integer "code" for this enumeration.

getCode() - Method in enum loci.formats.codec.CompressionType

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.codec.JPEG2000BoxType

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.codec.JPEG2000SegmentMarker

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.tiff.IFDType

getCode() - Method in enum loci.formats.tiff.PhotoInterp

getCode() - Method in enum loci.formats.tiff.TiffCompression

getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Returns the specified coded code-block, for the specified component, in the current tile.

getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in interface jj2000.j2k.entropy.decoder.CodedCBlkDataSrcDec

Returns the specified coded code-block, for the specified component, in the current tile.

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the specified code-block in the current tile for the specified component, as a copy (see below).

getCodeBlockSize() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets codeBlockSize.

getCodeBlockSize() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets codeBlockSize

getCodecName(int) - Method in class loci.formats.in.AVIReader

getCodecName() - Method in enum loci.formats.tiff.TiffCompression

Retrieves the name of the TIFF compression codec.

getCodecOptions() - Method in class loci.formats.tiff.TiffParser

Retrieves the current set of codec options being used to decompress pixel data.

getCodepage() - Method in class loci.poi.hpsf.CustomProperties

Gets the codepage.

getCodepage() - Method in class loci.poi.hpsf.Section

Gets the section's codepage, if any.

getCodepage() - Method in class loci.poi.hssf.record.CodepageRecord

get the codepage for this workbook

getCodepage() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

get the codepage for the file

getCodeSegSymbol() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets codeSegSymbol

getCodestreamOffset() - Method in class loci.formats.in.JPEG2000MetadataParser

Retrieves the offset to the first contiguous codestream.

getCodestreamPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the pixel type as specified in the header.

getCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method creates and returns an array of positions to contiguous codestreams in the file

getCodestreamSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of channels the image has as specified in the header.

getCodestreamSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the width of the image as specified in the header.

getCodestreamSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the height of the image as specified in the header.

getCol() - Method in class loci.poi.hssf.util.CellReference

getCol1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column number for the top-left position.

getCol1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getCol2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column of the bottom right corner of this shape.

getCol2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getColapsed() - Method in class loci.poi.hssf.record.RowRecord

get whether or not to colapse this row

getColInfo(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getCollapsed() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get whether the cells are collapsed

getColLevelMax() - Method in class loci.poi.hssf.record.GutsRecord

get the maximum outline level for the col gutter.

getColor(short) - Method in class loci.poi.hssf.record.PaletteRecord

Returns the color value at a given index

getColor() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getColor() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the color for the font

getColor(short) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Retrieves the color at a given index

getColor() - Method in class ome.xml.model.Channel

getColor() - Method in class ome.xml.model.Well

getColor1() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColor2() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColor3() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColor4() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns the currently set TIFFColorConverter object, or null if none is set.

getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the current TIFFColorConverter object that will be used to perform color conversion when writing the image, or null if none is set.

getColorFormat() - Method in enum ome.jxr.ifd.PixelFormat

getColorMap(IFD) - Method in class loci.formats.tiff.TiffParser

Retrieve the color map associated with the given IFD.

getColorMode() - Method in class loci.plugins.in.ImporterOptions

getColorModeInfo() - Method in class loci.plugins.in.ImporterOptions

getColorModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the ColorModel of the image.

getColorModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getColorModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getColorModel() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

Returns the color model created from the palette box.

getColorModel() - Method in class loci.formats.FormatWriter

getColorModel() - Method in interface loci.formats.IFormatWriter

Gets the color model.

getColorModel() - Method in class loci.formats.ImageWriter

getColorModel() - Method in class loci.formats.WriterWrapper

getColorModel() - Method in class loci.plugins.util.RecordedImageProcessor

getColorModes() - Method in class loci.plugins.in.ImporterOptions

getColorPaletteIndex() - Method in class loci.poi.hssf.record.FontRecord

get the font's color palette index

getColorSpace(Node) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

getColorSpace() - Method in class ome.jxr.ifd.IFDMetadata

getColorTable(Node, String, boolean, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getColorValue(TextField) - Method in class loci.plugins.in.ColorDialog

getColourPaletteIndex() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the colour palette index field for the LineFormat record.

getColumn() - Method in class loci.formats.in.OMEXMLReader.BinData

getColumn(String) - Method in class loci.formats.in.ScreenReader

getColumn(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor

getColumn() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getColumn() - Method in class loci.poi.hssf.record.BlankRecord

get the column this cell defines within the row

getColumn() - Method in class loci.poi.hssf.record.BoolErrRecord

getColumn() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

get the column this cell defines within the row

getColumn() - Method in class loci.poi.hssf.record.formula.ExpPtg

getColumn() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getColumn() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getColumn() - Method in class loci.poi.hssf.record.FormulaRecord

getColumn() - Method in class loci.poi.hssf.record.LabelRecord

getColumn() - Method in class loci.poi.hssf.record.LabelSSTRecord

getColumn() - Method in class loci.poi.hssf.record.NoteRecord

Return the column that contains the comment

getColumn() - Method in class loci.poi.hssf.record.NumberRecord

getColumn() - Method in class loci.poi.hssf.record.RKRecord

getColumn() - Method in class loci.poi.hssf.usermodel.HSSFComment

Return the column of the cell that contains the comment

getColumn() - Method in class mdbtools.dbengine.sql.FQColumn

getColumn(int) - Method in class mdbtools.dbengine.sql.Select

getColumn() - Method in class ome.xml.model.Well

getColumNames(int) - Method in interface loci.formats.services.MetakitService

getColumNames(int) - Method in class loci.formats.services.MetakitServiceImpl

getColumnBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns all the column page breaks

getColumnBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Retrieves all the vertical page breaks

getColumnCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg

getColumnCount() - Method in class mdbtools.dbengine.sql.Select

getColumnCount() - Method in interface mdbtools.dbengine.Table

getColumnCount() - Method in class mdbtools.dbengine.Tests.SimpleDataSourceTable

getColumnFrom() - Method in class loci.poi.hssf.util.Region

get the upper left hand corner column number

getColumnName(int) - Method in interface mdbtools.dbengine.Table

getColumnName(int) - Method in class mdbtools.dbengine.Tests.SimpleDataSourceTable

getColumnNames(String) - Method in interface loci.formats.services.MetakitService

getColumnNames(String) - Method in class loci.formats.services.MetakitServiceImpl

getColumnNames(int) - Method in class ome.metakit.MetakitReader

Retrieve the name of every column in the table with the given index.

getColumnNames(String) - Method in class ome.metakit.MetakitReader

Retrieve the name of every column in the named table.

getColumnNamingConvention() - Method in class ome.xml.model.Plate

getColumnRaw() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getColumnRaw() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getColumns() - Method in class ome.xml.model.Plate

getColumnTo() - Method in class loci.poi.hssf.util.Region

get the lower right hand corner column number

getColumnToSort(Object) - Method in class mdbtools.dbengine.tasks.SimpleSort

getColumnTypes(int) - Method in interface loci.formats.services.MetakitService

getColumnTypes(String) - Method in interface loci.formats.services.MetakitService

getColumnTypes(int) - Method in class loci.formats.services.MetakitServiceImpl

getColumnTypes(String) - Method in class loci.formats.services.MetakitServiceImpl

getColumnTypes(int) - Method in class ome.metakit.MetakitReader

Retrieve the type for every column in the table with the given index.

getColumnTypes(String) - Method in class ome.metakit.MetakitReader

Retrieve the type for every column in the named table.

getColumnWidth(short) - Method in class loci.poi.hssf.model.Sheet

get the width of a given column in units of 1/20th of a point width (twips?)

getColumnWidth() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the columns' width in 1/256 of a character width

getColumnWidth(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the width (in units of 1/256th of a character width )

getColWidth() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

get the default column width

getComment(int, int) - Method in class loci.formats.in.MetamorphReader

getComment() - Method in class loci.formats.tiff.IFD

Convenience method for obtaining the ImageDescription from this IFD.

getComment() - Method in class loci.formats.tiff.TiffParser

Convenience method for obtaining a stream's first ImageDescription.

getCommentAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getCommentAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a CommentAnnotation.

getCommentAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of CommentAnnotation.

getCommentAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of CommentAnnotation.

getCommentAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of CommentAnnotation elements.

getCommentAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of CommentAnnotation.

getCommentAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of CommentAnnotation.

getCommentAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of CommentAnnotation.

getCommentAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getCommentAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getCommentAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getCommentAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of CommentAnnotation.

getCommentAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getComments() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getComments() - Method in class loci.formats.in.JPEG2000MetadataParser

Retrieves the list of comments stored in the file.

getComments() - Method in class loci.poi.hpsf.SummaryInformation

Returns the comments (or null).

getCompany() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the company (or null).

getCompatibilityList() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the compatibilty list of this file type box.

getCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply forward component transformation associated with the current tile.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component, using the 'transfer type' specified in the block given as argument.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply inverse component transformation associated with the current tile.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns a block of image data containing the specifed rectangular area, in the specified component, as a copy (see below).

getCompDef(int) - Method in class jj2000.j2k.ModuleSpec

Gets default value of the specified component.

getCompHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the height in pixels of the specified component in the current tile.

getCompImgHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getCompImgHeight(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the height in pixels of the specified component in the overall image, for the given (component) resolution level.

getCompImgHeight(int) - Method in interface jj2000.j2k.image.ImgData

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the height in pixels of the specified component in the overall image.

getCompImgHeight(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the height in pixels of the specified component in the overall image, for the given resolution level.

getCompImgHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the height in pixels of the specified component in the overall image, for the given resolution level.

getCompImgWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

Width of the specified tile-component

getCompImgWidth(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the width in pixels of the specified component in the overall image, for the given (component) resolution level.

getCompImgWidth(int) - Method in interface jj2000.j2k.image.ImgData

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the width in pixels of the specified component in the overall image.

getCompImgWidth(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the width in pixels of the specified component in the overall image, for the given resolution level.

getCompImgWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the width in pixels of the specified component in the overall image, for the given resolution level.

getComplexData() - Method in class loci.poi.ddf.EscherComplexProperty

Get the complex data value.

getComponent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

getComponent(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel

getComponent(int) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

get the specified component

getComponentAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

getComponentTransformation() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets componentTransformation.

getComponentTransformation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets componentTransformation

getComponentType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

getComposite() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getComposite() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getCompressedSize() - Method in class loci.poi.ddf.EscherMetafileBlip

getCompressedSize() - Method in class loci.poi.ddf.EscherPictBlip

getCompressedSize() - Method in class org.libjpegturbo.turbojpeg.TJCompressor

Returns the size of the image (in bytes) generated by the most recent compress/encode operation.

getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.BoundSheetRecord

get whether or not to interperate the Sheetname as compressed unicode (8/16 bit) (This is undocumented but can be found as Q187919 on the Microsoft(tm) Support site)

getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.NameRecord

gets the name compressed Unicode flag

getCompression() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getCompression() - Method in enum loci.formats.codec.CompressionType

Returns the compression.

getCompression(String) - Method in class loci.formats.FormatReader

Retrieves an Compression enumeration value for the given String.

getCompression() - Method in class loci.formats.FormatWriter

getCompression() - Method in interface loci.formats.IFormatWriter

Gets the current compression type.

getCompression() - Method in class loci.formats.ImageWriter

getCompression(int) - Method in class loci.formats.in.OBFReader

getCompression() - Method in class loci.formats.tiff.IFD

Retrieves the image's compression type (TIFF tag Compression) from this IFD.

getCompression() - Method in class loci.formats.WriterWrapper

getCompression() - Method in class ome.xml.model.BinData

getCompression() - Method in class ome.xml.model.External

getCompressionCodecOptions(IFD) - Method in enum loci.formats.tiff.TiffCompression

Creates a set of codec options for compression.

getCompressionCodecOptions(IFD, CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Creates a set of codec options for compression.

getCompressionFlag() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Is the contents of the blip compressed?

getCompressionMap() - Static method in enum loci.formats.tiff.TiffCompression

getCompressionTagValue() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieve the value to be assigned to the TIFF Compression tag in the TIFF image metadata.

getCompressionType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieve the name of the compression type supported by this compressor.

getCompressionType(String) - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getCompressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the compression type.

getCompressionTypes() - Method in class loci.formats.FormatWriter

getCompressionTypes() - Method in interface loci.formats.IFormatWriter

Gets the available compression types.

getCompressionTypes() - Method in class loci.formats.ImageWriter

getCompressionTypes() - Method in class loci.formats.WriterWrapper

getCompSize(IndexColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Gets the size of the components or the bit depth for all the color coomponents.

getCompSubsX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the component sub-sampling factor, with respect to the reference grid, along the horizontal direction for the specified component.

getCompSubsX(int) - Method in interface jj2000.j2k.image.ImgData

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the component subsampling factor in the horizontal direction, for the specified component.

getCompSubsY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the component sub-sampling factor, with respect to the reference grid, along the vertical direction for the specified component.

getCompSubsY(int) - Method in interface jj2000.j2k.image.ImgData

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the component subsampling factor in the vertical direction, for the specified component.

getCompULX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal coordinate of the upper-left corner of the active tile, with respect to the canvas origin, in the component coordinates, for the specified component.

getCompULX(int) - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.Tiler

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the vertical coordinate of the upper-left corner of the active tile, with respect to the canvas origin, in the component coordinates, for the specified component.

getCompULY(int) - Method in interface jj2000.j2k.image.ImgData

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.Tiler

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical coordinate of the upper-left corner of the specified component in the current tile.

getCompWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width in pixels of the specified component in the current tile.

getConcatenateInfo() - Method in class loci.plugins.in.ImporterOptions

getConfig(String) - Method in class loci.formats.in.PrairieMetadata

Gets the value of the given configuration key.

getConfig() - Method in class loci.formats.in.PrairieMetadata

Gets the map of configuration key/value pairs.

getConfigDirectory() - Method in class loci.tests.testng.ConfigurationTree

Returns the base directory holding the configuration files

getConstraintsForCell(int, int, Container, int) - Static method in class loci.plugins.config.SpringUtilities

getConstructor(Class<T>) - Method in class loci.common.services.ServiceFactory

Retrieves a constructor for a given class from the constructor cache if possible.

getContent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box content in byte array.

getContents() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources

getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources

getContrastMethod(String) - Method in class loci.formats.FormatReader

Retrieves an ContrastMethod enumeration value for the given String.

getContrastMethod() - Method in class ome.xml.model.Channel

getCopies() - Method in class loci.poi.hssf.record.PrintSetupRecord

getCopies() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of copies.

getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.COD

getCopy(int) - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a copy of this object

getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getCopy() - Method in class jj2000.j2k.decoder.DecoderSpecs

Returns a copy of the current object.

getCopy() - Method in class jj2000.j2k.ModuleSpec

getCopyrightNotice() - Method in class ome.jxr.ifd.IFDMetadata

getCoreIndex() - Method in class loci.formats.FileStitcher

getCoreIndex() - Method in class loci.formats.FormatReader

getCoreIndex() - Method in interface loci.formats.IFormatReader

Return the index into CoreMetadata of the current resolution/series.

getCoreIndex() - Method in class loci.formats.ImageReader

getCoreIndex() - Method in class loci.formats.in.FilePatternReader

getCoreIndex() - Method in class loci.formats.ReaderWrapper

getCoreMetadataList() - Method in class loci.formats.DimensionSwapper

getCoreMetadataList() - Method in class loci.formats.FileStitcher

getCoreMetadataList() - Method in class loci.formats.FormatReader

getCoreMetadataList() - Method in interface loci.formats.IFormatReader

Obtains the core metadata values for the current file.

getCoreMetadataList() - Method in class loci.formats.ImageReader

getCoreMetadataList() - Method in class loci.formats.in.FilePatternReader

getCoreMetadataList() - Method in class loci.formats.in.LeicaHandler

getCoreMetadataList() - Method in class loci.formats.in.ND2Handler

getCoreMetadataList() - Method in class loci.formats.ReaderWrapper

getCorrection(String) - Method in class loci.formats.FormatReader

Retrieves an Correction enumeration value for the given String.

getCorrection() - Method in class loci.formats.in.ND2Handler

getCorrection() - Method in class ome.xml.model.Objective

getCorrectionCollar() - Method in class ome.xml.model.ObjectiveSettings

getCount() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the number of data items present in the field.

getCount() - Method in class loci.formats.FilePattern

getCount() - Method in class loci.poi.hssf.record.FnGroupCountRecord

get the number of built-in functions

getCount() - Method in enum ome.jxr.ifd.IFDEntry

getCreateDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the creation time (or null).

getCreationDate() - Method in interface loci.formats.services.EXIFService

getCreationDate() - Method in class loci.formats.services.EXIFServiceImpl

getCreator() - Method in class ome.xml.model.OME

getCropInfo() - Method in class loci.plugins.in.ImporterOptions

getCropRegion(int) - Method in class loci.plugins.in.ImporterOptions

getCropRegion(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCrossingPoint() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the crossing point field for the AxisOptions record.

getCrossingPoint() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the crossing point field for the CategorySeriesAxis record.

getCStep(int) - Method in class loci.plugins.in.ImporterOptions

getCStep(int) - Method in class loci.plugins.in.ImportProcess

getCurrentColorModel() - Method in class loci.plugins.util.RecordedImageProcessor

getCurrentCountry() - Method in class loci.poi.hssf.record.CountryRecord

gets the current country

getCurrentFile() - Method in class loci.formats.FormatReader

getCurrentFile() - Method in interface loci.formats.IFormatReader

Returns the current file.

getCurrentFile() - Method in class loci.formats.ImageReader

getCurrentFile() - Method in class loci.formats.ReaderWrapper

getCurrentFile() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCurrentFile(String[]) - Method in class loci.plugins.macro.LociFunctions

getCurrentPos() - Method in class loci.formats.cache.Cache

Gets the current dimensional position.

getCustomColor(int, int) - Method in class loci.plugins.in.ImporterOptions

getCustomColorKey(int, int) - Method in class loci.plugins.in.ImporterOptions

getCustomMenuLength() - Method in class loci.poi.hssf.record.NameRecord

gets the custom menu length

getCustomMenuText() - Method in class loci.poi.hssf.record.NameRecord

get the custom menu text

getCustomPalette() - Method in class loci.poi.hssf.model.Workbook

Returns the custom palette in use for this workbook; if a custom palette record does not exist, then it is created.

getCustomPalette() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

getCustomProperties() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Gets the custom properties.

getCutIn(Double) - Static method in class loci.formats.FormatTools

getCutIn() - Method in class ome.xml.model.TransmittanceRange

getCutInTolerance() - Method in class ome.xml.model.TransmittanceRange

getCutInToleranceUnitXsdDefault() - Static method in class ome.xml.model.TransmittanceRange

getCutInUnitXsdDefault() - Static method in class ome.xml.model.TransmittanceRange

getCutOut(Double) - Static method in class loci.formats.FormatTools

getCutOut() - Method in class ome.xml.model.TransmittanceRange

getCutOutTolerance() - Method in class ome.xml.model.TransmittanceRange

getCutOutToleranceUnitXsdDefault() - Static method in class ome.xml.model.TransmittanceRange

getCutOutUnitXsdDefault() - Static method in class ome.xml.model.TransmittanceRange

getCycle() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the cycle associated with this Sequence.

getCycleCount() - Method in class loci.formats.in.PrairieMetadata

Gets the number of recorded cycles.

getCycleMax() - Method in class loci.formats.in.PrairieMetadata

Gets the maximum cycle value.

getCycleMin() - Method in class loci.formats.in.PrairieMetadata

Gets the minimum cycle value.

getCZTag(IFD) - Method in class loci.formats.in.ZeissLSMReader

getData() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a reference to the data object associated with the field.

getData() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the entire image in a single Raster.

getData(Rectangle) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns an arbitrary rectangular region of the RenderedImage in a Raster.

getData() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Returns the UUID data of this box.

getData() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getData(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getData() - Method in class jj2000.j2k.image.DataBlk

Returns the array containing the data, or null if there is no data.

getData() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the array containing the data, or null if there is no data array.

getData() - Method in class jj2000.j2k.image.DataBlkInt

Returns the array containing the data, or null if there is no data array.

getData(DataBlk, int, boolean) - Method in class jj2000.j2k.image.ImgDataConverter

Implements the 'getInternCompData()' and the 'getCompData()' methods.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Returns the array containing the data, or null if there is no data.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the array containing the data, or null if there is no data array.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the array containing the data, or null if there is no data array.

getData() - Method in class loci.formats.gui.SignedByteBuffer

getData(int) - Method in class loci.formats.gui.SignedByteBuffer

getData() - Method in class loci.formats.gui.SignedShortBuffer

getData(int) - Method in class loci.formats.gui.SignedShortBuffer

getData() - Method in class loci.formats.gui.UnsignedIntBuffer

getData(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getData() - Method in class loci.poi.ddf.EscherBlipWMFRecord

The BLIP data

getData() - Method in class loci.poi.ddf.EscherTextboxRecord

Returns any extra data associated with this record.

getData() - Method in class loci.poi.ddf.UnknownEscherRecord

getData() - Method in class loci.poi.hssf.record.ContinueRecord

get the data for continuation

getData() - Method in class loci.poi.hssf.record.DrawingRecord

getData() - Method in class loci.poi.hssf.record.formula.AttrPtg

getData() - Method in class loci.poi.hssf.usermodel.HSSFPictureData

Gets the picture data.

getData() - Method in interface loci.poi.poifs.storage.ListManagedBlock

Get the data from the block

getData() - Method in class loci.poi.poifs.storage.RawDataBlock

Get the data from the block

getData() - Method in class loci.poi.poifs.storage.SmallDocumentBlock

Get the data from the block

getData(int) - Method in class loci.poi.util.BinaryTree.Node

get the specified data

getData() - Method in class mdbtools.dbengine.SelectEngine

Resolve the from clause to a single set of data

getData() - Method in interface mdbtools.dbengine.Table

getData() - Method in class mdbtools.dbengine.Tests.SimpleDataSourceTable

getDataElements(int, Object) - Method in class loci.formats.gui.Index16ColorModel

getDataElements(int, Object) - Method in class loci.formats.gui.SignedColorModel

getDataElements(int, Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getDataFloat() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the array containing the data, or null if there is no data array.

getDataFloat() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the array containing the data, or null if there is no data array.

getDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the index of the format

getDataFormatString(Workbook) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

Get the contents of the format string, by looking up the DataFormat against the supplied workbook

getDataInt() - Method in class jj2000.j2k.image.DataBlkInt

Returns the array containing the data, or null if there is no data array.

getDataInt() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the array containing the data, or null if there is no data array.

getDataLabelPlacement() - Method in class loci.poi.hssf.record.TextRecord

getDataset(int) - Method in class ome.xml.model.OME

getDatasetAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getDatasetAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Dataset.

getDatasetAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Dataset.

getDatasetAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetCount() - Method in class ome.xml.meta.AggregateMetadata

getDatasetCount() - Method in class ome.xml.meta.DummyMetadata

getDatasetCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Dataset elements.

getDatasetCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetDescription(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Dataset.

getDatasetDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetExperimenterGroupRef(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetExperimenterGroupRef(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetExperimenterGroupRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterGroupRef property of Dataset.

getDatasetExperimenterGroupRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of Dataset.

getDatasetExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetID(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetID(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Dataset.

getDatasetID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetImageRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetImageRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getDatasetImageRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ImageRef property of Dataset.

getDatasetImageRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetImageRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetImageRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetImageRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ImageRef elements in Dataset.

getDatasetImageRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetName(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetName(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Dataset.

getDatasetName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDatasetRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getDatasetRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of DatasetRef elements.

getDatasetRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDatasetStructureDescription() - Method in class loci.formats.FormatReader

getDatasetStructureDescription() - Method in interface loci.formats.IFormatReader

Returns a short description of the dataset structure.

getDatasetStructureDescription() - Method in class loci.formats.ImageReader

getDatasetStructureDescription() - Method in class loci.formats.in.FilePatternReader

getDatasetStructureDescription() - Method in class loci.formats.ReaderWrapper

getDataType() - Method in class jj2000.j2k.image.DataBlk

Returns the data type of the DataBlk object, as defined in this class.

getDataType() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the identifier of this data type, TYPE_FLOAT, as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.image.DataBlkInt

Returns the identifier of this data type, TYPE_INT, as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_FLOAT for this class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_INT for this class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Returns the data type of the CBlkWTData object, as defined in the DataBlk class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the identifier of this data type, TYPE_FLOAT, as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the data type of this object, always DataBlk.TYPE_INT.

getDataType(int, int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Return the data type of this CBlkWTDataSrc for the given component in the current tile.

getDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Return the data type of this CBlkWTDataSrc.

getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_FLOAT for this class.

getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt

Returns the type of data on which this filter works, as defined in the DataBlk interface, which is always TYPE_INT for this class.

getDataType() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the type of data on which this filter works, as defined in the DataBlk interface.

getDatatype() - Method in enum ome.jxr.ifd.PixelType

getDataTypeFromNumBits(int, boolean) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

getDataTypes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns a bit mask indicating the set of data types that may be used to store the data associated with the tag.

getDataTypeSize(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Return the number of bits occupied by dataType which must be one of the DataBuffer TYPEs.

getDate() - Method in class loci.formats.in.MetamorphHandler

getDate() - Method in class loci.formats.in.ND2Handler

getDate() - Method in class loci.formats.in.PrairieMetadata

Gets the date of the acquisition.

getDate() - Method in class loci.tests.testng.Configuration

getDateCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a date.

getDatestamp() - Method in class loci.formats.in.SVSReader

getDateTime() - Method in class ome.jxr.ifd.IFDMetadata

getDbcellAt(int) - Method in class loci.poi.hssf.record.IndexRecord

getDebugInfo() - Method in class loci.poi.hssf.record.UnicodeString

return a character representation of the fields of this record

getDecoderSpecs() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the DecoderSpecs instance filled when reading the headers

getDecodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Gets decodingRate.

getDecomp(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the wavelet tree decomposition.

getDecomp(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the wavelet tree decomposition.

getDecompLevels(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the number of decomposition levels that are applied to obtain the LL band, in the specified tile-component.

getDecompLevels(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the number of decomposition levels that are applied to the LL band, in the specified tile-component.

getDecompositionLevel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets decompositionLevel

getDecompressedImage() - Method in class ome.jxr.JXRReader

getDecompressedStream(String) - Method in class loci.formats.in.CellomicsReader

getDecompType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the decomposition type to be used in component 'n' and tile 't'.

getDecSpecType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the type of specification for the decomposition in the specified component and tile.

getDefault() - Method in class jj2000.j2k.ModuleSpec

Gets default value for this module.

getDefault() - Method in class loci.plugins.prefs.BooleanOption

Gets the default value of the option.

getDefault() - Method in class loci.plugins.prefs.DoubleOption

Gets the default value of the option.

getDefault() - Method in class loci.plugins.prefs.StringOption

Gets the default value of the option.

getDefaultColorModel() - Method in class loci.plugins.util.RecordedImageProcessor

getDefaultColumnWidth() - Method in class loci.poi.hssf.model.Sheet

get the default column width for the sheet (if the columns do not define their own width)

getDefaultColumnWidth() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default column width for the sheet (if the columns do not define their own width) in characters

getDefaultConfiguration() - Static method in class loci.formats.gui.AWTImageTools

Gets the default graphics configuration for the environment.

getDefaultCountry() - Method in class loci.poi.hssf.record.CountryRecord

gets the default country

getDefaultCustomColor(int) - Method in class loci.plugins.in.ImporterOptions

getDefaultHeader() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display a default header

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AddPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AreaPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ArrayPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AttrPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.BoolPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ErrPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ExpPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the default operands class value

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.IntPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the default operands class value

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MissingArgPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NamePtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NameXPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NumberPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.OperationPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.PercentPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ptg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.StringPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnknownPtg

getDefaultOptions() - Static method in class loci.formats.codec.CodecOptions

Return CodecOptions with reasonable default values.

getDefaultOptions() - Static method in class loci.formats.codec.JPEG2000CodecOptions

Return JPEG2000CodecOptions with reasonable default values.

getDefaultOptions(CodecOptions) - Static method in class loci.formats.codec.JPEG2000CodecOptions

Return JPEG2000CodecOptions using the given CodecOptions as the default.

getDefaultReaderClasses() - Static method in class loci.formats.ImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet

get the default row height for the sheet (if the rows do not define their own height)

getDefaultRowHeight() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default row height for the sheet (if the rows do not define their own height) in twips (1/20 of a point)

getDefaultRowHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default row height for the sheet (if the rows do not define their own height) in points.

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

getDefaultValue(String) - Method in class loci.plugins.prefs.OptionsList

Gets the default value of the string option with the given key.

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

getDefaultWriterClasses() - Static method in class loci.formats.ImageWriter

getDefinitionLength() - Method in class loci.poi.hssf.record.NameRecord

get the definition length

getDelMenuCount() - Method in class loci.poi.hssf.record.MMSRecord

get number of add del options (should be 0)

getDeltaT(int) - Method in class loci.tests.testng.Configuration

getDeltaT() - Method in class ome.xml.model.Plane

getDeltaTUnitXsdDefault() - Static method in class ome.xml.model.Plane

getDenom() - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor

Returns denominator

getDenominator() - Method in class loci.formats.tiff.TiffRational

Gets this number's denominator.

getDenominator() - Method in class loci.poi.hssf.record.SCLRecord

Get the denominator field for the SCL record.

getDenominator() - Method in class ome.jxr.ifd.JXRRational

getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.DequantizerParams

Returns the type of the dequantizer for which the parameters are.

getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

Returns the type of the dequantizer for which the parameters are.

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi

getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi

getDescription() - Method in class loci.formats.gui.ComboFileFilter

Returns the filter's description.

getDescription() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's description.

getDescription() - Method in class loci.formats.gui.FormatFileFilter

Gets the filter's description.

getDescription() - Method in class loci.formats.gui.NoExtensionFileFilter

Gets the filter's description.

getDescription() - Method in class loci.poi.ddf.EscherPropertyMetaData

getDescription() - Method in class ome.xml.model.Annotation

getDescription() - Method in class ome.xml.model.Dataset

getDescription() - Method in class ome.xml.model.Experiment

getDescription() - Method in class ome.xml.model.ExperimenterGroup

getDescription() - Method in class ome.xml.model.Image

getDescription() - Method in class ome.xml.model.MicrobeamManipulation

getDescription() - Method in class ome.xml.model.Plate

getDescription() - Method in class ome.xml.model.PlateAcquisition

getDescription() - Method in class ome.xml.model.Project

getDescription() - Method in class ome.xml.model.Reagent

getDescription() - Method in class ome.xml.model.ROI

getDescription() - Method in class ome.xml.model.Screen

getDescriptionText() - Method in class loci.poi.hssf.record.NameRecord

gets the description text

getDescriptionTextLength() - Method in class loci.poi.hssf.record.NameRecord

gets the description text length

getDeser() - Method in class loci.formats.Memoizer

Returns a configured Kryo instance.

getDeserializer() - Method in class loci.poi.hssf.record.SSTRecord

getDestination(ImageReadParam, Iterator, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getDestinationRegion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getDestinationType(ImageReadParam, Iterator) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Gets the destination image type.

getDetector(int) - Method in class loci.tests.testng.Configuration

getDetector() - Method in class ome.xml.model.DetectorSettings

getDetector(int) - Method in class ome.xml.model.Instrument

getDetectorAmplificationGain(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorAmplificationGain(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorAmplificationGain(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AmplificationGain property of Detector.

getDetectorAmplificationGain(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Detector.

getDetectorAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Detector.

getDetectorAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorCount(int) - Method in class ome.xml.meta.DummyMetadata

getDetectorCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Detector elements.

getDetectorCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorGain(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorGain(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorGain(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Gain property of Detector.

getDetectorGain(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorID(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Detector.

getDetectorID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Detector.

getDetectorLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Detector.

getDetectorManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Detector.

getDetectorModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorOffset(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorOffset(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorOffset(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Offset property of Detector.

getDetectorOffset(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Detector.

getDetectorSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettings() - Method in class ome.xml.model.Channel

getDetectorSettingsBinning(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsBinning(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsBinning(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Binning property of DetectorSettings.

getDetectorSettingsBinning(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsGain(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsGain(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsGain(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Gain property of DetectorSettings.

getDetectorSettingsGain(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsID(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of DetectorSettings.

getDetectorSettingsID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsIntegration(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsIntegration(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsIntegration(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Integration property of DetectorSettings.

getDetectorSettingsIntegration(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsOffset(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsOffset(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsOffset(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Offset property of DetectorSettings.

getDetectorSettingsOffset(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsReadOutRate(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsReadOutRate(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsReadOutRate(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ReadOutRate property of DetectorSettings.

getDetectorSettingsReadOutRate(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsVoltage(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsVoltage(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsVoltage(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Voltage property of DetectorSettings.

getDetectorSettingsVoltage(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorSettingsZoom(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorSettingsZoom(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorSettingsZoom(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Zoom property of DetectorSettings.

getDetectorSettingsZoom(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorType(String) - Method in class loci.formats.FormatReader

Retrieves an DetectorType enumeration value for the given String.

getDetectorType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorType(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Detector.

getDetectorType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorVoltage(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorVoltage(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorVoltage(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Voltage property of Detector.

getDetectorVoltage(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDetectorZoom(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDetectorZoom(int, int) - Method in class ome.xml.meta.DummyMetadata

getDetectorZoom(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Zoom property of Detector.

getDetectorZoom(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDeviceclip() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getDeviceSubtype(String) - Method in class loci.formats.in.CellSensReader

getDgg() - Method in class loci.poi.hssf.model.DrawingManager

getDgg() - Method in class loci.poi.hssf.model.DrawingManager2

getDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Not sure what this is for (maybe fill lines?) 1 = down, 2 = up, 3 = both, 0 for none..

getDialog() - Method in class loci.poi.hssf.record.WSBoolRecord

get whether sheet is a dialog sheet or not

getDialog() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether sheet is a dialog sheet or not

getDichroic(int) - Method in class ome.xml.model.Instrument

getDichroicAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Dichroic.

getDichroicAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Dichroic.

getDichroicAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicCount(int) - Method in class ome.xml.meta.DummyMetadata

getDichroicCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Dichroic elements.

getDichroicCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicID(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Dichroic.

getDichroicID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Dichroic.

getDichroicLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Dichroic.

getDichroicManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Dichroic.

getDichroicModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDichroicSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDichroicSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getDichroicSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Dichroic.

getDichroicSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDictionary() - Method in class loci.poi.hpsf.CustomProperties

Gets the dictionary which contains IDs and names of the named custom properties.

getDictionary() - Method in class loci.poi.hpsf.Section

Gets the section's dictionary.

getDigitPart(String) - Method in class loci.poi.hssf.util.RangeAddress

getDim() - Method in class loci.poi.hssf.util.AreaReference

return the dimensions of this area

getDimension(String) - Method in class loci.formats.in.ZeissTIFFHandler.Scaling

Get a dimension by its index.

getDimension(String) - Method in interface loci.formats.services.NetCDFService

Retrieves the length of a dimension.

getDimension(String) - Method in class loci.formats.services.NetCDFServiceImpl

getDimensionDescriptionNodes(Element) - Method in class loci.formats.in.LIFReader

getDimensionOrder() - Method in class loci.formats.ChannelMerger

getDimensionOrder() - Method in class loci.formats.ChannelSeparator

getDimensionOrder() - Method in class loci.formats.DimensionSwapper

getDimensionOrder() - Method in class loci.formats.FileStitcher

getDimensionOrder() - Method in class loci.formats.FormatReader

getDimensionOrder(String) - Method in class loci.formats.FormatReader

Retrieves an DimensionOrder enumeration value for the given String.

getDimensionOrder() - Method in interface loci.formats.IFormatReader

Gets a five-character string representing the dimension order in which planes will be returned.

getDimensionOrder() - Method in class loci.formats.ImageReader

getDimensionOrder() - Method in class loci.formats.in.FilePatternReader

getDimensionOrder() - Method in class loci.formats.ReaderWrapper

getDimensionOrder(String[]) - Method in class loci.plugins.macro.LociFunctions

getDimensionOrder() - Method in class loci.tests.testng.Configuration

getDimensionOrder() - Method in class ome.xml.model.Pixels

getDimensionSwapper() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getDimsLoc() - Method in class loci.poi.hssf.model.Sheet

get the location of the DimensionsRecord (which is the last record before the value section)

getDirectory(String) - Method in class loci.formats.services.NetCDFServiceImpl

getDirectory() - Method in class loci.poi.hssf.usermodel.HSSFObjectData

Gets the object data.

getDirectoryAsIFD(TIFFDirectory) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Converts a TIFFDirectory to a TIFFIFD.

getDiscriminatingValue(ILoggingEvent) - Method in class loci.tests.testng.ThreadNameBasedDiscriminator

getDisplayedTab() - Method in class loci.poi.hssf.record.WindowOneRecord

get the displayed tab number

getDisplayedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

sets the first tab that is displayed in the list of tabs in excel.

getDisplayFormulas() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display formulas

getDisplayGridlines() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display gridlines

getDisplayGuts() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the outline symbols are displaed

getDisplayGuts() - Method in class loci.poi.hssf.record.WSBoolRecord

get whether to display the guts or not

getDisplayGuts() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether to display the guts or not

getDisplayHorizontalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the horizontal scrollbar or not

getDisplayMode() - Method in class loci.poi.hssf.record.TextRecord

Get the display mode field for the Text record.

getDisplayRowColHeadings() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display row and column headings

getDisplayTabs() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the tabs or not

getDisplayVerticalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the vertical scrollbar or not

getDisplayZeros() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display zero values

getDocparts() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the doc parts (or null) when this method is implemented.

getDocument() - Method in class loci.formats.gui.XMLWindow

Gets the XML document currently being displayed within the window.

getDocument() - Method in class loci.poi.poifs.filesystem.DocumentNode

get the POIFSDocument

getDocument() - Method in class loci.poi.poifs.property.DocumentProperty

get the POIFSDocument

getDocumentBytes(String) - Method in interface loci.formats.services.POIService

Retrieve all of the raw bytes that correspond to the given file name.

getDocumentBytes(String, int) - Method in interface loci.formats.services.POIService

Retrieve at most 'length' bytes that correspond to the given file name.

getDocumentBytes(String) - Method in class loci.formats.services.POIServiceImpl

getDocumentBytes(String, int) - Method in class loci.formats.services.POIServiceImpl

getDocumentList() - Method in interface loci.formats.services.POIService

Retrieve a list of all files in the current POI file system.

getDocumentList() - Method in class loci.formats.services.POIServiceImpl

getDocumentName() - Method in class ome.jxr.ifd.IFDMetadata

getDocumentProperty() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Get the DocumentProperty

getDocumentStream(String) - Method in interface loci.formats.services.POIService

Retrieve a RandomAccessInputStream corresponding to the given file name.

getDocumentStream(String) - Method in class loci.formats.services.POIServiceImpl

getDocumentSummaryInformation() - Method in class loci.poi.POIDocument

Fetch the Document Summary Information of the document

getDocumentSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

Returns the Document Summary Information properties singleton.

getDomains() - Method in class loci.formats.FormatReader

getDomains() - Method in interface loci.formats.IFormatReader

Returns the list of domains represented by the current file.

getDomains() - Method in class loci.formats.ImageReader

getDomains() - Method in class loci.formats.in.CellomicsReader

getDomains() - Method in class loci.formats.in.FilePatternReader

getDomains() - Method in class loci.formats.in.ICSReader

getDomains() - Method in class loci.formats.in.MetamorphTiffReader

getDomains() - Method in class loci.formats.in.NiftiReader

getDomains() - Method in class loci.formats.in.OMETiffReader

getDomains() - Method in class loci.formats.in.OMEXMLReader

getDomains() - Method in class loci.formats.ReaderWrapper

getDouble(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a double value from a byte array, reads it in little endian format then converts the resulting revolting IEEE 754 (curse them) floating point number to a happy java double

getDouble(byte[]) - Static method in class loci.poi.util.LittleEndian

get a double value from the beginning of a byte array

getDouble() - Method in class ome.jxr.ifd.JXRRational

getDoubleAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getDoubleAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a DoubleAnnotation.

getDoubleAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of DoubleAnnotation.

getDoubleAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of DoubleAnnotation.

getDoubleAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of DoubleAnnotation elements.

getDoubleAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of DoubleAnnotation.

getDoubleAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of DoubleAnnotation.

getDoubleAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of DoubleAnnotation.

getDoubleAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getDoubleAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getDoubleAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of DoubleAnnotation.

getDoubleAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getDoubleAttribute(Node, String, double, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getDoubleAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getDoubles(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubles(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubles(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubleValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getDoubleValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock

getDraft() - Method in class loci.poi.hssf.record.PrintSetupRecord

getDraft() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the draft mode.

getDrawAreaHeight() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getDrawAreaWidth() - Method in class loci.poi.hssf.usermodel.HSSFPolygon

getDrawingGroup(int) - Method in class loci.poi.hssf.model.DrawingManager2

getDrawingGroupId() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster

getDrawingGroupId() - Method in class loci.poi.ddf.EscherDgRecord

Gets the drawing group id for this record.

getDrawingManager() - Method in class loci.poi.hssf.model.Workbook

getDrawingsSaved() - Method in class loci.poi.ddf.EscherDggRecord

getDsf() - Method in class loci.poi.hssf.record.DSFRecord

get the DSF flag

getDT(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getDX(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getDx1() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Retrieves offset within the parent coordinate space for the top left point.

getDx1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset within the top-left cell.

getDx1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDx2() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Retrieves offset within the parent coordinate space for the bottom right point.

getDx2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset withing the cell for the bottom-right corner of this shape.

getDx2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDY(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getDy1() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Gets offset within the parent coordinate space for the top left point.

getDy1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset within the top-left corner of the current shape.

getDy1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDy2() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Gets the offset within the parent coordinate space for the bottom right point.

getDy2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset withing the cell for the bottom-right corner of this shape.

getDy2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor

getDZ(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getEditTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the total time spent in editing the document (or 0).

getEffectiveSeries(int) - Method in class loci.formats.in.ZeissLSMReader

getEffectiveSizeC() - Method in class loci.formats.FormatReader

getEffectiveSizeC() - Method in interface loci.formats.IFormatReader

Gets the effective size of the C dimension, guaranteeing that getEffectiveSizeC() * getSizeZ() * getSizeT() == getImageCount() regardless of the result of isRGB().

getEffectiveSizeC() - Method in class loci.formats.ImageReader

getEffectiveSizeC() - Method in class loci.formats.in.FilePatternReader

getEffectiveSizeC() - Method in class loci.formats.ReaderWrapper

getEffectiveSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions

getElapsedTime(int, int) - Method in class loci.formats.in.SlideBook6Reader

getElem(int) - Method in class loci.formats.gui.SignedByteBuffer

getElem(int, int) - Method in class loci.formats.gui.SignedByteBuffer

getElem(int, int) - Method in class loci.formats.gui.SignedShortBuffer

getElem(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElem(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElemDouble(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElemDouble(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElement(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getElement(int) - Method in class loci.poi.ddf.EscherArrayProperty

getElementDescription(String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementInfo(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementMaxChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementMinChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

This method will be called by the getNativeNodeForSimpleBox of the class Box to get the element names.

getElements() - Method in class loci.formats.FilePattern

getElements() - Method in class loci.formats.FilePatternBlock

getElementSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getElementSize(String) - Method in interface loci.formats.services.JHDFService

Retrieves the Element Size of a dataset in Byte.

getElementSize(String) - Method in class loci.formats.services.JHDFServiceImpl

getElemFloat(int) - Method in class loci.formats.gui.UnsignedIntBuffer

getElemFloat(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer

getEllipseAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Ellipse.

getEllipseAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Ellipse.

getEllipseFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Ellipse.

getEllipseFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Ellipse.

getEllipseFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Ellipse.

getEllipseFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Ellipse.

getEllipseFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseID(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Ellipse.

getEllipseID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Ellipse.

getEllipseLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Ellipse.

getEllipseLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseRadiusX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseRadiusX(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseRadiusX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RadiusX property of Ellipse.

getEllipseRadiusX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseRadiusY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseRadiusY(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseRadiusY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RadiusY property of Ellipse.

getEllipseRadiusY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Ellipse.

getEllipseStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Ellipse.

getEllipseStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Ellipse.

getEllipseStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseText(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Ellipse.

getEllipseText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Ellipse.

getEllipseTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Ellipse.

getEllipseTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Ellipse.

getEllipseTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Ellipse.

getEllipseTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Ellipse.

getEllipseVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseX(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Ellipse.

getEllipseX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEllipseY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getEllipseY(int, int) - Method in class ome.xml.meta.DummyMetadata

getEllipseY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Ellipse.

getEllipseY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getEmail() - Method in class ome.xml.model.Experimenter

getEmission() - Method in class loci.formats.in.SVSReader

getEmissionWavelength(Double) - Static method in class loci.formats.FormatTools

getEmissionWavelength(int) - Method in class loci.tests.testng.Configuration

getEmissionWavelength() - Method in class ome.xml.model.Channel

getEmissionWavelengths() - Method in class loci.formats.in.ND2Handler

getEmissionWavelengthUnitXsdDefault() - Static method in class ome.xml.model.Channel

getEmpty() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Get the empty field for the SheetProperties record.

getEncoderVersion() - Method in class ome.jxr.parser.FileParser

getEncoding() - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.

As of 3-Jan-06 POI now automatically handles Unicode without forcing the encoding.

getEncodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets encodingRate.

getEncodingRate() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets encodingRate

getEndRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the physical row number of the end row in a block

getEndTime() - Method in class ome.xml.model.PlateAcquisition

getEntity() - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.BinningEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler

getEntity() - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler

Retrieve the entity corresponding to this handler.

getEntity() - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MediumEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.PulseEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getEntity() - Method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.FloatIM3Record

Return all entries as an array

getEntries() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

get an iterator of the Entry instances contained directly in this instance (in other words, children only; no grandchildren etc.)

getEntries() - Method in class loci.poi.poifs.filesystem.DirectoryNode

get an iterator of the Entry instances contained directly in this instance (in other words, children only; no grandchildren etc.)

getEntry(IRandomAccess, int) - Method in class loci.formats.in.IM3Reader.BooleanIM3Record

Get the boolean value at the given index

getEntry(IRandomAccess, int) - Method in class loci.formats.in.IM3Reader.FloatIM3Record

Get the floating-point value at the given index

getEntry(IRandomAccess, int) - Method in class loci.formats.in.IM3Reader.IntIM3Record

Get the integer value at the given index

getEntry(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

get a specified Entry by name

getEntry(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode

get a specified Entry by name

getEntryCount() - Method in class loci.common.ZipHandle

Returns the number of entries.

getEntryCount() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

find out how many Entry instances are contained directly within this DirectoryEntry

getEntryCount() - Method in class loci.poi.poifs.filesystem.DirectoryNode

find out how many Entry instances are contained directly within this DirectoryEntry

getEntryName() - Method in class loci.common.ZipHandle

Get the name of the backing Zip entry.

getEntryOffsets() - Method in class ome.jxr.ifd.IFDContainer

Returns the list of offsets counted from the beginning of a data stream.

getEntryType() - Method in enum ome.jxr.ifd.IFDEntry

getEnumeratedAttribute(Node, String, String[], int, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getEnumeratedAttribute(Node, String, String[]) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getEnumeratedColorSpace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the enumerated color space.

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.BinningEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler

getEnumeration(String) - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler

Attempt to find an enumeration from a list of enumeration values.

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MediumEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PulseEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getEnumeration(ElectricPotential) - Method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getEnumeration(Frequency) - Method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getEnumeration(Length) - Method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getEnumeration(Power) - Method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getEnumeration(Pressure) - Method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getEnumeration(Temperature) - Method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getEnumeration(Time) - Method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getEofLoc() - Method in class loci.poi.hssf.model.Sheet

getEPH() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets EPH.

getEPH() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets EPH

getEqualsToIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord

getEquation() - Method in class mdbtools.dbengine.sql.Join

getEquipmentMake() - Method in class ome.jxr.ifd.IFDMetadata

getEquipmentModel() - Method in class ome.jxr.ifd.IFDMetadata

getErrorCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as an error code.

getErrorCount() - Method in class loci.common.xml.ValidationErrorHandler

getErrorMessage() - Method in class loci.formats.FilePattern

Gets the file pattern error message, if any.

getErrorValue() - Method in class loci.poi.hssf.record.BoolErrRecord

get the error value for the cell

getEscherGraphics() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getEscherGraphics() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getEscherProperties() - Method in class loci.poi.ddf.EscherOptRecord

The list of properties stored by this record.

getEscherProperty(int) - Method in class loci.poi.ddf.EscherOptRecord

The list of properties stored by this record.

getEscherRecord(int) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getEscherRecordSize(List) - Method in class loci.poi.hssf.record.EscherAggregate

How many bytes do the raw escher records contain.

getEscherTextbox() - Method in class loci.poi.hssf.model.TextboxShape

getExcelDate(Date) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a Date, converts it into a double representing its internal Excel representation, which is the number of days since 1/1/1900.

getExcitation() - Method in class loci.formats.in.SVSReader

getExcitationWavelength(Double) - Static method in class loci.formats.FormatTools

getExcitationWavelength(int) - Method in class loci.tests.testng.Configuration

getExcitationWavelength() - Method in class ome.xml.model.Channel

getExcitationWavelengths() - Method in class loci.formats.in.ND2Handler

getExcitationWavelengthUnitXsdDefault() - Static method in class ome.xml.model.Channel

getExFormatAt(int) - Method in class loci.poi.hssf.model.Workbook

gets the ExtendedFormatRecord at the given 0-based index

getExifIFDs() - Method in class loci.formats.tiff.TiffParser

Returns EXIF IFDs.

getExifTagName(int) - Static method in class loci.formats.in.BaseTiffReader

getExperiment() - Method in class ome.xml.model.MicrobeamManipulation

getExperiment(int) - Method in class ome.xml.model.OME

getExperimentCount() - Method in class ome.xml.meta.AggregateMetadata

getExperimentCount() - Method in class ome.xml.meta.DummyMetadata

getExperimentCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Experiment elements.

getExperimentCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimentDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimentDescription(int) - Method in class ome.xml.meta.DummyMetadata

getExperimentDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Experiment.

getExperimentDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenter(int) - Method in class ome.xml.model.OME

getExperimenterAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Experimenter.

getExperimenterAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Experimenter.

getExperimenterAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterCount() - Method in class ome.xml.meta.AggregateMetadata

getExperimenterCount() - Method in class ome.xml.meta.DummyMetadata

getExperimenterCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Experimenter elements.

getExperimenterCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterEmail(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterEmail(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterEmail(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Email property of Experimenter.

getExperimenterEmail(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterFirstName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterFirstName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterFirstName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FirstName property of Experimenter.

getExperimenterFirstName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroup(int) - Method in class ome.xml.model.OME

getExperimenterGroupAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of ExperimenterGroup.

getExperimenterGroupAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in ExperimenterGroup.

getExperimenterGroupAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupCount() - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupCount() - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ExperimenterGroup elements.

getExperimenterGroupCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupDescription(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of ExperimenterGroup.

getExperimenterGroupDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupExperimenterRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupExperimenterRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupExperimenterRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of ExperimenterGroup.

getExperimenterGroupExperimenterRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupExperimenterRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupExperimenterRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupExperimenterRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ExperimenterRef elements in ExperimenterGroup.

getExperimenterGroupExperimenterRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupID(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupID(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of ExperimenterGroup.

getExperimenterGroupID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupLeader(int, int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupLeader(int, int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupLeader(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Leader property of ExperimenterGroup.

getExperimenterGroupLeader(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterGroupName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterGroupName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterGroupName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of ExperimenterGroup.

getExperimenterGroupName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterID(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterID(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Experimenter.

getExperimenterID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterInstitution(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterInstitution(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterInstitution(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Institution property of Experimenter.

getExperimenterInstitution(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterLastName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterLastName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterLastName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LastName property of Experimenter.

getExperimenterLastName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterMiddleName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterMiddleName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterMiddleName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MiddleName property of Experimenter.

getExperimenterMiddleName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimenterName() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getExperimenterUserName(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimenterUserName(int) - Method in class ome.xml.meta.DummyMetadata

getExperimenterUserName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the UserName property of Experimenter.

getExperimenterUserName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimentExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimentExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata

getExperimentExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of Experiment.

getExperimentExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimentID(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimentID(int) - Method in class ome.xml.meta.DummyMetadata

getExperimentID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Experiment.

getExperimentID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExperimentType(String) - Method in class loci.formats.FormatReader

Retrieves an ExperimentType enumeration value for the given String.

getExperimentType(int) - Method in class ome.xml.meta.AggregateMetadata

getExperimentType(int) - Method in class ome.xml.meta.DummyMetadata

getExperimentType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Experiment.

getExperimentType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getExposures() - Method in class loci.formats.in.MetamorphHandler

getExposureTime(int, int) - Method in class loci.formats.in.SlideBook6Reader

getExposureTime() - Method in class loci.formats.in.SVSReader

getExposureTime(int) - Method in class loci.tests.testng.Configuration

getExposureTime() - Method in class ome.xml.model.Plane

getExposureTimes() - Method in class loci.formats.in.ND2Handler

getExposureTimeUnitXsdDefault() - Static method in class ome.xml.model.Plane

getExpressionLength() - Method in class loci.poi.hssf.record.FormulaRecord

get the length (in number of tokens) of the expression

getExpressionLength() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getExtendedRst() - Method in class loci.poi.hssf.record.UnicodeString

getExtension() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's first valid extension.

getExtensionFunctions() - Method in class loci.plugins.macro.MacroFunctions

getExtensions() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's valid extensions.

getExternal() - Method in class ome.xml.model.BinaryFile

getExternalConfigFile(String, ConfigurationTree) - Static method in class loci.tests.testng.TestTools

Retrieve an external configuration file given a root directory and test configuration

getExternalDescription() - Method in class ome.xml.model.Well

getExternalIdentifier() - Method in class ome.xml.model.Plate

getExternalIdentifier() - Method in class ome.xml.model.Well

getExternalSeries() - Method in class loci.formats.FileStitcher

getExternalSeries(int) - Method in class loci.formats.FileStitcher

getExternalSymlinkConfigFile(String, ConfigurationTree) - Static method in class loci.tests.testng.TestTools

Retrieve an external symlinkedconfiguration file given a root directory and a test configuration

getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getExternSheetNumber() - Method in class loci.poi.hssf.record.NameRecord

gets the extern sheet number

getExternsheetPos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the externsheetPos.

getExtraLayers(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the number of extra layers to add after the optimization point 'n', but before optimization point 'n+1'.

getExtraLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box extra length.

getExtraSeries(String) - Method in class loci.formats.in.ZeissLSMReader

getf(int) - Method in class loci.plugins.util.RecordedImageProcessor

getf(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

getFailureClass() - Method in exception loci.common.services.DependencyException

Returns the class that was used during a failed instantiation.

getFamily() - Method in class loci.poi.hssf.record.FontRecord

get the font family (TODO)

getField(String) - Method in class loci.formats.in.CellomicsReader

getField(String) - Method in class loci.formats.in.FlexReader

getField(int) - Method in class loci.formats.in.FluoviewReader

getField(String) - Method in class loci.formats.in.MetamorphTiffReader

getFieldFromSeries(int) - Method in class loci.formats.in.InCellReader

getFieldIndex() - Method in class loci.formats.in.ND2Handler

getFieldIndex() - Method in class ome.xml.model.Plate

getFieldName(Class<?>, int) - Static method in class loci.common.DebugTools

This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.

getFieldName(int) - Static method in class loci.formats.tiff.IFD

This method uses reflection to scan the values of this class's static fields, returning the first matching field's name.

getFilamentAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Filament.

getFilamentAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentID(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Filament.

getFilamentID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Filament.

getFilamentLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Filament.

getFilamentManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Filament.

getFilamentModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentPower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentPower(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentPower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of Filament.

getFilamentPower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Filament.

getFilamentSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilamentType(String) - Method in class loci.formats.FormatReader

Retrieves an FilamentType enumeration value for the given String.

getFilamentType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilamentType(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilamentType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Filament.

getFilamentType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFile(int, int) - Method in class loci.formats.in.CellWorxReader

Retrieve the .pnl file corresponding to the given series.

getFile(String) - Method in class loci.formats.in.FV1000Reader

getFile(int) - Method in class loci.formats.in.MicromanagerReader.Position

getFile(String, int, int, int, int, int) - Method in class loci.formats.in.MicromanagerReader.Position

getFile(int) - Method in class loci.formats.in.PerkinElmerReader

getFile(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the File with the given channel.

getFile(int, int, int) - Method in class loci.formats.in.PrairieMetadata

Gets the Frame at the given (cycle, index, channel).

getFile(int, int) - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the Frame at the given (cycle, index, channel).

getFile(Integer, Location) - Method in class loci.formats.in.VolocityReader

getFile() - Method in interface loci.formats.services.JHDFService

Retrieves the current initialized file path.

getFile() - Method in class loci.formats.services.JHDFServiceImpl

getFile() - Method in interface loci.formats.services.NetCDFService

Retrieves the current initialized file path.

getFile() - Method in class loci.formats.services.NetCDFServiceImpl

getFile() - Method in class loci.tests.testng.Configuration

getFileAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getFileAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a FileAnnotation.

getFileAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of FileAnnotation.

getFileAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of FileAnnotation.

getFileAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of FileAnnotation elements.

getFileAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of FileAnnotation.

getFileAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of FileAnnotation.

getFileAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getFileAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getFileAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of FileAnnotation.

getFileAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFileChannel() - Method in class loci.common.NIOFileHandle

Gets the FileChannel from this FileHandle.

getFileHandle(String) - Method in class loci.formats.in.FlexReader

getFileIdClusters() - Method in class loci.poi.ddf.EscherDggRecord

getFileIndex(int) - Method in class loci.formats.in.PerkinElmerReader

getFilename(int, int, IFormatReader, String) - Static method in class loci.formats.FormatTools

getFilename(int, int) - Method in class loci.formats.in.BDReader

getFilename() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the filename associated with this File.

getFileName() - Method in class ome.xml.model.BinaryFile

getFileName() - Method in class ome.xml.model.UUID

getFilenames(String, IFormatReader) - Static method in class loci.formats.FormatTools

getFilePattern() - Method in class loci.formats.AxisGuesser

Gets the file pattern.

getFilePattern() - Method in class loci.formats.FileStitcher.ExternalSeries

getFilePattern() - Method in class loci.formats.FileStitcher

Gets the file pattern object used to build the list of files.

getFilePointer() - Method in class loci.common.ByteArrayHandle

getFilePointer() - Method in class loci.common.FileHandle

getFilePointer() - Method in interface loci.common.IRandomAccess

Returns the current offset in this stream.

getFilePointer() - Method in class loci.common.NIOFileHandle

getFilePointer() - Method in class loci.common.NIOInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class loci.common.RandomAccessInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class loci.common.RandomAccessOutputStream

Returns the current offset within the stream.

getFilePointer() - Method in class loci.common.StreamHandle

getFiles() - Method in class loci.formats.FilePattern

Gets a listing of all files matching the given file pattern.

getFiles() - Method in class loci.formats.FileStitcher.ExternalSeries

getFiles(String, List, ConfigurationTree, String) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFiles(String, List, ConfigurationTree, String, String[]) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFiles(String, List, ConfigurationTree, String, String[], String) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFileSharing() - Method in class loci.poi.hssf.model.Workbook

getFileSize(String) - Method in interface loci.formats.services.POIService

Retrieve the total number of bytes in the given file.

getFileSize(String) - Method in class loci.formats.services.POIServiceImpl

getFileSize() - Method in class ome.jxr.parser.FileParser

getFileStitcher() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getFileTimestamp() - Static method in class loci.common.DateTools

Returns a timestamp for the current timezone in a format suitable for a filename in a locale-independent format ("YYYY-MM-DD_HH-MM-SS")

getFileVersion(RandomAccessInputStream) - Method in class loci.formats.in.OBFReader

getFillBackground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the background palette color index

getFillBackgroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the background fill color

getFillByte() - Static method in class loci.poi.poifs.storage.DocumentBlock

getFillColor() - Method in class loci.poi.hssf.usermodel.HSSFShape

The color used to fill this shape.

getFillColor() - Method in class ome.xml.model.Shape

getFillForeground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the foreground palette color index

getFillForegroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the foreground fill color

getFillPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the fill palette options bitmask (see indivdual bit getters that reference this method)

getFillPattern() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the fill pattern (??) - set to 1 to fill with foreground color

getFillRule(String) - Method in class loci.formats.FormatReader

Retrieves an FillRule enumeration value for the given String.

getFillRule() - Method in class ome.xml.model.Shape

getFilter() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets filters.

getFilter() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Filter should always be 0

getFilter(int) - Method in class ome.xml.model.Instrument

getFilterAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Filter.

getFilterAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Filter.

getFilterAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterCount(int) - Method in class ome.xml.meta.AggregateMetadata

getFilterCount(int) - Method in class ome.xml.meta.DummyMetadata

getFilterCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Filter elements.

getFilterCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterFilterWheel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterFilterWheel(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterFilterWheel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FilterWheel property of Filter.

getFilterFilterWheel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterID(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Filter.

getFilterID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Filter.

getFilterLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Filter.

getFilterManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Filter.

getFilterModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets filters

getFilters() - Method in class loci.formats.gui.ComboFileFilter

Gets the list of file filters forming this filter combination.

getFilterSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Filter.

getFilterSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSet(int) - Method in class ome.xml.model.Instrument

getFilterSetCount(int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetCount(int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of FilterSet elements.

getFilterSetCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetDichroicRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetDichroicRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetDichroicRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DichroicRef property of FilterSet.

getFilterSetDichroicRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetEmissionFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the EmissionFilterRef property of FilterSet.

getFilterSetEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetEmissionFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of EmissionFilterRef elements in FilterSet.

getFilterSetEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetExcitationFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExcitationFilterRef property of FilterSet.

getFilterSetExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetExcitationFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ExcitationFilterRef elements in FilterSet.

getFilterSetExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetID(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of FilterSet.

getFilterSetID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of FilterSet.

getFilterSetLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of FilterSet.

getFilterSetManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of FilterSet.

getFilterSetModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterSetSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterSetSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterSetSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of FilterSet.

getFilterSetSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterType(int, AnWTFilterSpec) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec

Get the filter type common to all component of a given tile.

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the type of filter used according to the FilterTypes interface.

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the type of filter used according to the FilterTypes interface(W9x7).

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the type of filter used according to the FilterTypes interface (W5x3).

getFilterType(String) - Method in class loci.formats.FormatReader

Retrieves an FilterType enumeration value for the given String.

getFilterType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getFilterType(int, int) - Method in class ome.xml.meta.DummyMetadata

getFilterType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Filter.

getFilterType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getFilterWheel() - Method in class ome.xml.model.Filter

getFinalCRC() - Method in class loci.common.CRC

getFirst() - Method in class loci.formats.FilePattern

getFirst() - Method in class loci.formats.FilePatternBlock

getFirstC() - Method in class ome.xml.model.TiffData

getFirstCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getFirstCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the number of the first cell contained in this row.

getFirstChannel(String) - Method in class loci.formats.in.SlidebookTiffReader

getFirstChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getFirstChild(Element, String) - Method in class loci.formats.in.PrairieMetadata

Gets the first child element with the given name.

getFirstCodeStreamLength() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method returns the length of the first contiguous codestreams in the file

getFirstCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method returns the position of the first contiguous codestreams in the file

getFirstCol() - Method in class loci.poi.hssf.record.DimensionsRecord

get the first column number for the sheet

getFirstCol() - Method in class loci.poi.hssf.record.RowRecord

get the logical col number for the first cell this row (0 based index)

getFirstColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the first column this record defines formatting info for

getFirstColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getFirstColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg

getFirstColumn() - Method in class loci.poi.hssf.record.MulBlankRecord

starting column (first cell this holds in the row)

getFirstColumn() - Method in class loci.poi.hssf.record.MulRKRecord

starting column (first cell this holds in the row)

getFirstColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getFirstColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg

getFirstComment(int) - Method in class loci.formats.in.MetamorphReader

Returns the TIFF comment from the first IFD of the first STK file in the given series.

getFirstDigitPosition(String) - Method in class loci.poi.hssf.util.RangeAddress

getFirstFile() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the first File of the Sequence.

getFirstFrame() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the first Frame of the Sequence.

getFirstIFD() - Method in class loci.formats.tiff.TiffParser

Gets the first IFD within the TIFF file, or null if the input source is not a valid TIFF file.

getFirstIFDEntry(int) - Method in class loci.formats.tiff.TiffParser

Retrieve a given entry from the first IFD in the stream.

getFirstName() - Method in class ome.xml.model.Experimenter

getFirstNode(Element, String) - Method in class loci.formats.in.ZeissCZIReader

getFirstNodeValue(Element, String) - Method in class loci.formats.in.ZeissCZIReader

getFirstOffset() - Method in class loci.formats.tiff.TiffParser

Gets offset to the first IFD, or -1 if stream is not TIFF.

getFirstRow() - Method in class loci.poi.hssf.record.DimensionsRecord

get the first row number for the sheet

getFirstRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getFirstRow() - Method in class loci.poi.hssf.record.formula.AreaPtg

getFirstRow() - Method in class loci.poi.hssf.record.IndexRecord

getFirstRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getFirstRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getFirstRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getFirstRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the first row on the sheet

getFirstSection() - Method in class loci.poi.hpsf.PropertySet

Gets the PropertySet's first section.

getFirstSection() - Method in class loci.poi.hpsf.SpecialPropertySet

getFirstSequence() - Method in class loci.formats.in.PrairieMetadata

Gets the first Sequence.

getFirstT() - Method in class ome.xml.model.TiffData

getFirstTimeInfo() - Method in class loci.plugins.in.ImporterOptions

getFirstZ() - Method in class ome.xml.model.TiffData

getFitHeight() - Method in class loci.poi.hssf.record.PrintSetupRecord

getFitHeight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of pages high to fit the sheet in.

getFitToPage() - Method in class loci.poi.hssf.record.WSBoolRecord

fit to page option is on

getFitToPage() - Method in class loci.poi.hssf.usermodel.HSSFSheet

fit to page option is on

getFitWidth() - Method in class loci.poi.hssf.record.PrintSetupRecord

getFitWidth() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of pages wide to fit sheet in.

getFixedHeader() - Method in class loci.formats.services.JPEGTurboServiceImpl

getFixedPoint(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the position of the fixed point in the specified component (i.e.

getFixedPoint(int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns the position of the fixed point in the specified component (i.e.

getFixedPoint(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.image.Tiler

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the position of the fixed point in the output data for the specified component.

getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the position of the fixed point in the specified component.

getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the position of the fixed point in the specified component, or equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the position of the fixed point in the specified component.

getFlag() - Method in class loci.poi.ddf.EscherClientAnchorRecord

0 = Move and size with Cells, 2 = Move but don't size with cells, 3 = Don't move or size with cells.

getFlag() - Method in class loci.poi.hssf.record.SupBookRecord

getFlag() - Method in class loci.poi.hssf.record.UseSelFSRecord

returns whether we use natural language formulas or not

getFlags() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the Flags data element.

getFlags() - Method in class loci.poi.ddf.EscherSpRecord

The flags that apply to this shape.

getFlags() - Method in class loci.poi.hssf.record.NoteRecord

Options flags.

getFlags() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Get the flags field for the SheetProperties record.

getFlexFiles() - Method in class loci.formats.in.FlexReader.MeaHandler

getFloatArray() - Method in class loci.plugins.util.RecordedImageProcessor

getFloatAttribute(Node, String, float, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getFloatAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getFloats(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloats(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloats(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloatValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock

getFluor() - Method in class ome.xml.model.Channel

getFlushedPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getFnGroup() - Method in class loci.poi.hssf.record.NameRecord

getFont() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics

getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getFontAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the font at the given index number

getFontAtIndex(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Returns the font in use at a particular index.

getFontDetails(Font) - Static method in class loci.poi.hssf.usermodel.StaticFontMetrics

Retrieves the fake font details for a given font.

getFontFamily(String) - Method in class loci.formats.FormatReader

Retrieves an FontFamily enumeration value for the given String.

getFontFamily() - Method in class ome.xml.model.Shape

getFontHeight() - Method in class loci.poi.hssf.record.FontRecord

gets the height of the font in 1/20th point units

getFontHeight() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the font height in unit's of 1/20th of a point.

getFontHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the font height

getFontIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the index to the FONT record (which font to use 0 based)

getFontIndex() - Method in class loci.poi.hssf.record.FontIndexRecord

Get the font index field for the FontIndex record.

getFontIndex() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun

getFontIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

getFontMetrics() - Method in class loci.plugins.util.RecordedImageProcessor

getFontMetrics() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics

getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getFontName() - Method in class loci.poi.hssf.record.FontRecord

get the name of the font

getFontName() - Method in class loci.poi.hssf.usermodel.FontDetails

getFontName() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the name for the font (i.e.

getFontNameLength() - Method in class loci.poi.hssf.record.FontRecord

get the length of the fontname string

getFontOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Gets the font used in a particular formatting run.

getFontpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getFontRecordAt(int) - Method in class loci.poi.hssf.model.Workbook

gets the font record at the given index in the font table.

getFontRenderContext() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getFontRenderContext() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getFontSize(Integer) - Static method in class loci.formats.FormatTools

getFontSize() - Method in class ome.xml.model.Shape

getFontSizeUnitXsdDefault() - Static method in class ome.xml.model.Shape

getFontStyle(String) - Method in class loci.formats.FormatReader

Retrieves an FontStyle enumeration value for the given String.

getFontStyle() - Method in class ome.xml.model.Shape

getFooter(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable

getFooter() - Method in class loci.poi.hssf.model.Sheet

Returns the FooterRecord.

getFooter() - Method in class loci.poi.hssf.record.FooterRecord

get the footer string

getFooter() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the user model for the document footer.

getFooterLength() - Method in class loci.poi.hssf.record.FooterRecord

get the length of the footer string

getFooterMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord

getFooterMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the footer margin.

getForceThumbnailsInfo() - Method in class loci.plugins.in.ImporterOptions

getForecolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the forecolor index field for the AreaFormat record.

getForegroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the foreground color field for the AreaFormat record.

getFormat() - Method in class loci.formats.FormatHandler

getFormat() - Method in interface loci.formats.IFormatHandler

Gets the name of this file format.

getFormat(String) - Method in class loci.formats.ImageReader

Gets a string describing the file format for the given file.

getFormat() - Method in class loci.formats.ImageReader

getFormat(String) - Method in class loci.formats.ImageWriter

Gets a string describing the file format for the given file.

getFormat() - Method in class loci.formats.ImageWriter

getFormat() - Method in class loci.formats.ReaderWrapper

getFormat() - Method in class loci.formats.WriterWrapper

getFormat(String, String[]) - Method in class loci.plugins.macro.LociFunctions

getFormat() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "format" field.

getFormat() - Method in class loci.poi.hpsf.SpecialPropertySet

getFormat(String, boolean) - Method in class loci.poi.hssf.model.Workbook

Returns a format index that matches the passed in format.

getFormat() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the format field for the LineFormat record.

getFormat(String) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format index that matches the given format string.

getFormat(short) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format string that matches the given format index

getFormatFlags() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the format flags field for the AreaFormat record.

getFormatFlags() - Method in class loci.poi.hssf.record.AreaRecord

Get the format flags field for the Area record.

getFormatFlags() - Method in class loci.poi.hssf.record.BarRecord

Get the format flags field for the Bar record.

getFormatFlags() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the format flags field for the DataFormat record.

getFormatFlags() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Get the format flags field for the SeriesLabels record.

getFormatID() - Method in class loci.poi.hpsf.Section

Returns the format ID.

getFormatIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the index to the Format record (which FORMAT to use 0-based)

getFormatIndex() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Get the format index field for the NumberFormatIndex record.

getFormatLine(PrintFormatTable.PrintStyles, String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getFormatName() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getFormatRun(int) - Method in class loci.poi.hssf.record.UnicodeString

getFormatRunCount() - Method in class loci.poi.hssf.record.UnicodeString

getFormats() - Method in class loci.poi.hssf.model.Workbook

Returns the list of FormatRecords in the workbook.

getFormatString() - Method in class loci.poi.hssf.record.FormatRecord

get the format string

getFormatted() - Method in class loci.poi.hssf.record.RowRecord

get whether the row has been formatted (even if its got all blank cells)

getFormattingRunLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the formatting run length field for the TextObjectBase record.

getFormulaOfLink() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the formula of link field for the LinkedData record.

getFormulaRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getFormulaTokens() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

getFrame(int, int) - Method in class loci.formats.in.PrairieMetadata

Gets the Frame at the given (cycle and index).

getFrame() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the <Frame> containing this <File>.

getFrame(int) - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the Frame with the given index.

getFramesPerSecond() - Method in class loci.formats.FormatWriter

getFramesPerSecond() - Method in interface loci.formats.IFormatWriter

Gets the frames per second to use when writing.

getFramesPerSecond() - Method in class loci.formats.ImageWriter

getFramesPerSecond() - Method in class loci.formats.WriterWrapper

getFreezePanes() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should freeze panes

getFreezePanesNoSplit() - Method in class loci.poi.hssf.record.WindowTwoRecord

freeze unsplit panes or not

getFrequencyMultiplication() - Method in class ome.xml.model.Laser

getFromCell() - Method in class loci.poi.hssf.util.RangeAddress

getFromCompressedUnicode(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Read 8 bit data (in ISO-8859-1 codepage) into a (unicode) Java String and return.

getFromParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getFromUnicodeBE(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in big endian format (most important byte first), return a Java String representation of it.

getFromUnicodeBE(byte[]) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in big endian format (most important byte first), return a Java String representation of it.

getFromUnicodeLE(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in Little Endian format (most important byte last), return a Java String representation of it.

getFromUnicodeLE(byte[]) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in little endian format (most important byte last), return a Java String representation of it.

getFullPrecision() - Method in class loci.poi.hssf.record.PrecisionRecord

get whether to use full precision or just skew all you figures all to hell.

getFunction(String, byte) - Method in class loci.poi.hssf.model.FormulaParser

Generates the variable function ptg for the formula.

getFunction() - Method in class mdbtools.dbengine.sql.FunctionDef

getFunctionIndex() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getG2D() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getGain() - Method in class loci.formats.in.MetamorphHandler

getGain(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the cth gain for this Frame.

getGain() - Method in class ome.xml.model.Detector

getGain() - Method in class ome.xml.model.DetectorSettings

getGains() - Method in class loci.formats.in.ND2Handler

getGenericExcitationSourceAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of GenericExcitationSource.

getGenericExcitationSourceAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceID(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of GenericExcitationSource.

getGenericExcitationSourceID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of GenericExcitationSource.

getGenericExcitationSourceLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of GenericExcitationSource.

getGenericExcitationSourceManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceMap(int, int) - Method in class ome.xml.meta.AggregateMetadata

Gets the Map value associated with this generic light source

getGenericExcitationSourceMap(int, int) - Method in class ome.xml.meta.DummyMetadata

Gets the Map value associated with this generic light source

getGenericExcitationSourceMap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MapAnnotation values from a GenericExcitationSource.

getGenericExcitationSourceMap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Gets the Map value associated with this generic light source

getGenericExcitationSourceModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of GenericExcitationSource.

getGenericExcitationSourceModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourcePower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourcePower(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourcePower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of GenericExcitationSource.

getGenericExcitationSourcePower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGenericExcitationSourceSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getGenericExcitationSourceSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getGenericExcitationSourceSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of GenericExcitationSource.

getGenericExcitationSourceSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getGifPaletteSize(int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

According do GIF specification size of clor table (palette here) must be in range from 2 to 256 and must be power of 2.

getGlobalCRC() - Method in class loci.common.CRC

getGlobalMeta(String) - Method in class loci.formats.FormatReader

Gets a value from the global metadata table.

getGlobalMetadata() - Method in class loci.formats.FormatReader

getGlobalMetadata() - Method in interface loci.formats.IFormatReader

Obtains the hashtable containing the metadata field/value pairs from the current file.

getGlobalMetadata() - Method in class loci.formats.ImageReader

getGlobalMetadata() - Method in class loci.formats.in.FilePatternReader

getGlobalMetadata() - Method in class loci.formats.in.LeicaHandler

getGlobalMetadata() - Method in class loci.formats.ReaderWrapper

getGnumericPart(byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

getGrandchildren(Element, String) - Method in class loci.formats.in.ZeissCZIReader

getGrandchildren(Element, String, String) - Method in class loci.formats.in.ZeissCZIReader

getGrandParent(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

get a node's grandparent.

getGreen(int) - Method in class loci.formats.gui.Index16ColorModel

getGreen(int) - Method in class loci.formats.gui.SignedColorModel

getGreen(Object) - Method in class loci.formats.gui.SignedColorModel

getGreen(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getGreen(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getGreen() - Method in class loci.poi.ddf.EscherRGBProperty

getGreen() - Method in class ome.xml.model.primitives.Color

Returns the green component of this color.

getGreenOffset(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

For the given pixel format, returns the number of bytes that the green component is offset from the start of the pixel.

getGreens() - Method in class loci.formats.gui.Index16ColorModel

Return the array of green color components.

getGridset() - Method in class loci.poi.hssf.record.GridsetRecord

get whether the gridlines are shown during printing.

getGridsetRecord() - Method in class loci.poi.hssf.model.Sheet

Gets the gridset record for this sheet.

getGroup(String) - Method in class loci.formats.services.NetCDFServiceImpl

Retrieves a group based on its fully qualified path.

getGroupBy(int) - Method in class mdbtools.dbengine.sql.Select

getGroupByCount() - Method in class mdbtools.dbengine.sql.Select

getGroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions

getGuardBits() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets guardBits

getHandle(String) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from the given file.

getHandle(String, boolean) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHandle(String, boolean, boolean) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHandle(String, boolean, boolean, int) - Static method in class loci.common.Location

getHandle(String) - Static method in class loci.common.ZipHandle

getHandles() - Method in class loci.tests.testng.FileHandleTest

getHashSHA1() - Method in class ome.xml.model.Plane

getHCenter() - Method in class loci.poi.hssf.record.HCenterRecord

get whether or not to horizonatally center this sheet.

getHeader() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getHeader(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable

getHeader() - Method in class loci.poi.hssf.model.Sheet

Returns the HeaderRecord.

getHeader() - Method in class loci.poi.hssf.record.HeaderRecord

get the header string

getHeader() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the user model for the document header.

getHeaderColor() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the palette index for the header color

getHeaderInfo(int, String) - Method in class loci.formats.in.DicomReader

getHeaderLength() - Method in class loci.poi.hssf.record.HeaderRecord

get the length of the header string

getHeaderMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord

getHeaderMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the header margin.

getHeaderPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the pixel type as specified in the header.

getHeaders() - Method in class loci.common.IniList

Gets the table names (headers) in the list.

getHeaderSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of channels the image has as specified in the header.

getHeaderSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the width of the image as specified in the header.

getHeaderSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the height of the image as specified in the header.

getHeadingPair() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the heading pair (or null) when this method is implemented.

getHeight() - Method in class com.luratech.lwf.lwfDecoder

getHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the height of the image.

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the height of the image.

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getHeight() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the number of leafs along the vertical direction.

getHeight() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Returns the number of leafs along the vertical direction.

getHeight() - Method in class loci.formats.codec.JPEGTileDecoder

getHeight() - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer

getHeight(int) - Method in class loci.formats.in.LegacyND2Reader

getHeight() - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.getHeight()

getHeight() - Method in class loci.formats.services.LuraWaveServiceImpl

getHeight(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack

getHeight() - Method in class loci.plugins.util.BFVirtualStack

getHeight() - Method in class loci.plugins.util.RecordedImageProcessor

getHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the height of the metafile in EMU's (English Metric Units).

getHeight() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the height field for the AxisParent record.

getHeight() - Method in class loci.poi.hssf.record.ChartFormatRecord

getHeight() - Method in class loci.poi.hssf.record.ChartRecord

Get the height field for the Chart record.

getHeight() - Method in class loci.poi.hssf.record.RowRecord

get the height of the row

getHeight() - Method in class loci.poi.hssf.record.TextRecord

Get the height field for the Text record.

getHeight() - Method in class loci.poi.hssf.record.WindowOneRecord

get the height of the window

getHeight() - Method in class loci.poi.hssf.usermodel.FontDetails

getHeight() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the row's height or ff (-1) for undefined/default-height in twips (1/20th of a point)

getHeight() - Method in class loci.poi.hssf.util.RangeAddress

getHeight() - Method in class ome.xml.model.Mask

getHeight() - Method in class ome.xml.model.Rectangle

getHeight() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the height of the JPEG image associated with this decompressor instance.

getHeightBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the height basis field for the FontBasis record.

getHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the row's height or ff (-1) for undefined/default-height in points (20*getHeight())

getHeightResoulution() - Method in class ome.jxr.ifd.IFDMetadata

getHelpTopicLength() - Method in class loci.poi.hssf.record.NameRecord

gets the help topic length

getHelpTopicText() - Method in class loci.poi.hssf.record.NameRecord

get the help topic text

getHexString() - Method in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AQUA

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLACK

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BROWN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORAL

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

getHexString() - Method in class loci.poi.hssf.util.HSSFColor

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GOLD

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIME

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.MAROON

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PINK

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PLUM

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.RED

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROSE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TAN

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TEAL

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.WHITE

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW

getHFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the horizontal analysis filters to be used in component 'n' and tile 't'.

getHFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the horizontal analysis filters to be used in component 'n' and tile 't'.

getHH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the HH child subband of this subband.

getHH() - Method in class jj2000.j2k.wavelet.Subband

Returns the HH child subband of this subband.

getHH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the HH child subband of this subband.

getHidden() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get whether or not these cells are hidden

getHidden() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether the window is hidden or not

getHidden() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the cell's using this style are to be hidden

getHiddenCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the hidden count or 0 if the DocumentSummaryInformation does not contain a hidden count.

getHideObj() - Method in class loci.poi.hssf.record.HideObjRecord

get hide object options

getHistogram() - Method in class loci.plugins.util.RecordedImageProcessor

getHistogramMax() - Method in class loci.plugins.util.RecordedImageProcessor

getHistogramMin() - Method in class loci.plugins.util.RecordedImageProcessor

getHistogramSize() - Method in class loci.plugins.util.RecordedImageProcessor

getHistoryBitMask() - Method in class loci.poi.hssf.record.BOFRecord

get the history bit mask (not very useful)

getHL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the HL (horizontal high-pass) child subband of this subband.

getHL() - Method in class jj2000.j2k.wavelet.Subband

Returns the HL (horizontal high-pass) child subband of this subband.

getHL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the HL (horizontal high-pass) child subband of this subband.

getHorAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the horizontal analysis wavelet filters used in each level, for the specified tile-component.

getHorAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the horizontal analysis wavelet filters used in each level, for the specified component and tile.

getHorizontalAlignment() - Method in class loci.poi.hssf.record.TextRecord

Get the horizontal alignment field for the Text record.

getHorizontalHold() - Method in class loci.poi.hssf.record.WindowOneRecord

get the horizontal position of the window (in 1/20ths of a point)

getHorizontallyCenter() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determine whether printed output for this sheet will be horizontally centered.

getHorizontalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Return the horizontal resolution.

getHorizontalScale() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Get the horizontalScale field for the PlotGrowth record.

getHorizontalSplitPosition() - Method in class loci.poi.hssf.util.PaneInformation

Returns the horizontal position of the split.

getHorizontalSplitTopRow() - Method in class loci.poi.hssf.util.PaneInformation

For a horizontal split returns the top row in the BOTTOM pane.

getHorizontalTextAlignment() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getHorWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

This function returns the horizontal wavelet filter relevant to this subband

getHorWFilter() - Method in class jj2000.j2k.wavelet.Subband

This function returns the horizontal wavelet filter relevant to this subband

getHorWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

This function returns the horizontal wavelet filter relevant to this subband

getHostComputer() - Method in class ome.jxr.ifd.IFDMetadata

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the time-reversed high-pass synthesis waveform of the filter, which is the high-pass filter.

getHPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the equivalent high-pass synthesis waveform of a cascade of filters, given the syhthesis waveform of the previous stage.

gethref() - Method in class ome.xml.model.External

getHResolution() - Method in class loci.poi.hssf.record.PrintSetupRecord

getHResolution() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the horizontal resolution.

getHtmlFooter() - Static method in class loci.formats.tools.PrintFormatTable

getHtmlFormatLine(String, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getHtmlHeader() - Static method in class loci.formats.tools.PrintFormatTable

getHumidity() - Method in class ome.xml.model.ImagingEnvironment

getICCProfile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the ICC color profile in this color specification box.

getIconic() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether the window has been iconized or not

getId(String) - Method in class loci.formats.tools.MakeTestOmeTiff

getId() - Method in class loci.plugins.in.ImporterOptions

getId() - Method in class loci.poi.ddf.EscherProperty

getID() - Method in class loci.poi.hpsf.Property

Returns the property's ID.

getId() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the id field for the SeriesText record.

getID() - Method in class loci.tests.testng.FormatReaderTest

getId() - Method in enum ome.jxr.ifd.PixelFormat

getId() - Method in enum ome.jxr.image.BitDepth

getId() - Method in enum ome.jxr.image.ComponentMode

getId() - Method in enum ome.jxr.image.FrequencyBand

getId() - Method in enum ome.jxr.image.InternalColorFormat

getId() - Method in enum ome.jxr.image.OutputColorFormat

getID() - Method in class ome.xml.model.Annotation

getID() - Method in class ome.xml.model.AnnotationRef

getID() - Method in class ome.xml.model.Channel

getID() - Method in class ome.xml.model.ChannelRef

getID() - Method in class ome.xml.model.Dataset

getID() - Method in class ome.xml.model.DatasetRef

getID() - Method in class ome.xml.model.Detector

getID() - Method in class ome.xml.model.DetectorSettings

getID() - Method in class ome.xml.model.Dichroic

getID() - Method in class ome.xml.model.DichroicRef

getID() - Method in class ome.xml.model.Experiment

getID() - Method in class ome.xml.model.Experimenter

getID() - Method in class ome.xml.model.ExperimenterGroup

getID() - Method in class ome.xml.model.ExperimenterGroupRef

getID() - Method in class ome.xml.model.ExperimenterRef

getID() - Method in class ome.xml.model.ExperimentRef

getID() - Method in class ome.xml.model.Filter

getID() - Method in class ome.xml.model.FilterRef

getID() - Method in class ome.xml.model.FilterSet

getID() - Method in class ome.xml.model.FilterSetRef

getID() - Method in class ome.xml.model.Image

getID() - Method in class ome.xml.model.ImageRef

getID() - Method in class ome.xml.model.Instrument

getID() - Method in class ome.xml.model.InstrumentRef

getID() - Method in class ome.xml.model.Leader

getID() - Method in class ome.xml.model.LightSource

getID() - Method in class ome.xml.model.LightSourceSettings

getID() - Method in class ome.xml.model.MicrobeamManipulation

getID() - Method in class ome.xml.model.MicrobeamManipulationRef

getID() - Method in class ome.xml.model.Objective

getID() - Method in class ome.xml.model.ObjectiveSettings

getID() - Method in class ome.xml.model.Pixels

getID() - Method in class ome.xml.model.Plate

getID() - Method in class ome.xml.model.PlateAcquisition

getID() - Method in class ome.xml.model.PlateRef

getID() - Method in class ome.xml.model.Project

getID() - Method in class ome.xml.model.ProjectRef

getID() - Method in class ome.xml.model.Pump

getID() - Method in class ome.xml.model.Reagent

getID() - Method in class ome.xml.model.ReagentRef

getID() - Method in class ome.xml.model.Reference

Retrieves the reference's target object ID.

getID() - Method in class ome.xml.model.ROI

getID() - Method in class ome.xml.model.ROIRef

getID() - Method in class ome.xml.model.Screen

getID() - Method in class ome.xml.model.Shape

getID() - Method in class ome.xml.model.Well

getID() - Method in class ome.xml.model.WellSample

getID() - Method in class ome.xml.model.WellSampleRef

getIdInfo() - Method in class loci.plugins.in.ImporterOptions

getIdle(boolean) - Method in class jj2000.j2k.util.ThreadPool

Returns and idle thread and removes it from the list of idle threads.

getIdLocation() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getIdMap() - Static method in class loci.common.Location

Return the id mapping.

getIdName() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getIdx() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor

Returns the index of this compressor.

getIFD(long) - Method in class loci.formats.tiff.TiffParser

Gets the IFD stored at the given offset.

getIFD() - Method in class ome.xml.model.TiffData

getIFDAsTree(TIFFIFD, String, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getIFDCount() - Method in class ome.jxr.parser.IFDParser

getIFDIndex(int, int) - Method in class loci.formats.in.NDPIReader

getIFDIndex(int) - Method in class loci.formats.in.SVSReader

getIFDIntArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in int format from this IFD, performing some error checking.

getIFDIntValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in int format from this IFD, or -1 if the given directory does not exist.

getIFDIntValue(int, int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in int format from this IFD, performing some error checking.

getIFDLongArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in long format from this IFD, performing some error checking.

getIFDLongValue(int, long) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in long format from this IFD, performing some error checking.

getIFDMetadata() - Method in class ome.jxr.parser.IFDParser

getIFDOffsets() - Method in class loci.formats.tiff.TiffParser

Gets the offsets to every IFD in the file.

getIFDRationalValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in rational format from this IFD, performing some error checking.

getIFDs() - Method in class loci.formats.in.MinimalTiffReader

Gets the list of IFDs associated with the current TIFF's image planes.

getIFDs() - Method in class loci.formats.tiff.TiffParser

Returns all IFDs in the file.

getIFDShortArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in short format from this IFD, performing some error checking.

getIFDStringValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value as a string from this IFD, performing some error checking.

getIFDTagName(int) - Static method in class loci.formats.tiff.IFD

Gets the name of the IFD tag encoded by the given number.

getIFDTextValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value as a string (regardless of type).

getIFDValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value from this IFD.

getIFDValue(int, Class) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value from this IFD, performing some error checking.

getIFDValue(TiffIFDEntry) - Method in class loci.formats.tiff.TiffParser

Retrieve the value corresponding to the given TiffIFDEntry.

getIlluminationType(String) - Method in class loci.formats.FormatReader

Retrieves an IlluminationType enumeration value for the given String.

getIlluminationType() - Method in class ome.xml.model.Channel

getImage() - Method in class loci.formats.gui.ImageViewer

Gets the currently displayed image.

getImage(byte[], int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getImage(int) - Method in class ome.xml.model.OME

getImageAcquisitionDate(int) - Method in class ome.xml.meta.AggregateMetadata

getImageAcquisitionDate(int) - Method in class ome.xml.meta.DummyMetadata

getImageAcquisitionDate(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AcquisitionDate property of Image.

getImageAcquisitionDate(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getImageAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getImageAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Image.

getImageAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getImageAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getImageAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Image.

getImageAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageBandPresence() - Method in class ome.jxr.ifd.IFDMetadata

getImageByteCount() - Method in class ome.jxr.ifd.IFDMetadata

getImageComments(int) - Method in class loci.formats.in.SlideBook6Reader

getImageCount() - Method in class loci.formats.ChannelMerger

getImageCount() - Method in class loci.formats.ChannelSeparator

getImageCount() - Method in class loci.formats.FileStitcher

getImageCount() - Method in class loci.formats.FormatReader

getImageCount() - Method in interface loci.formats.IFormatReader

Determines the number of image planes in the current file.

getImageCount() - Method in class loci.formats.ImageReader

getImageCount() - Method in class loci.formats.in.FilePatternReader

getImageCount() - Method in class loci.formats.ReaderWrapper

getImageCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getImageCount() - Method in class ome.xml.meta.AggregateMetadata

getImageCount() - Method in class ome.xml.meta.DummyMetadata

getImageCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Image elements.

getImageCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageCreationDate() - Method in class loci.formats.in.BaseTiffReader

Retrieves the image creation date.

getImageCreationDate(String[]) - Method in class loci.plugins.macro.LociFunctions

getImageData(int, int, int) - Method in class loci.formats.in.CellH5Reader

getImageData(int, int, int, int, int) - Method in class loci.formats.in.ImarisHDFReader

Retrieve an array corresponding to the specified image tile.

getImageDescription(Element) - Method in class loci.formats.in.LIFReader

getImageDescription() - Method in class loci.tests.testng.Configuration

getImageDescription() - Method in class ome.jxr.ifd.IFDMetadata

getImageDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getImageDescription(int) - Method in class ome.xml.meta.DummyMetadata

getImageDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Image.

getImageDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageDimension(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the dimnsion of the imageIndexth image.

getImageExperimenterGroupRef(int) - Method in class ome.xml.meta.AggregateMetadata

getImageExperimenterGroupRef(int) - Method in class ome.xml.meta.DummyMetadata

getImageExperimenterGroupRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterGroupRef property of Image.

getImageExperimenterGroupRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata

getImageExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata

getImageExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of Image.

getImageExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageExperimentRef(int) - Method in class ome.xml.meta.AggregateMetadata

getImageExperimentRef(int) - Method in class ome.xml.meta.DummyMetadata

getImageExperimentRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimentRef property of Image.

getImageExperimentRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageHeight() - Method in class ome.jxr.ifd.IFDMetadata

getImageID(int) - Method in class ome.xml.meta.AggregateMetadata

getImageID(int) - Method in class ome.xml.meta.DummyMetadata

getImageID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Image.

getImageID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageIndex() - Method in class loci.formats.gui.ImageViewer

Gets the index of the currently displayed image.

getImageIndex(int) - Method in class loci.formats.in.FluoviewReader

getImageIndex(String) - Method in class loci.formats.in.PCIReader

Get the image index from the image file name.

getImageInputStream() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Returns an ImageInputStream for reading.

getImageInstrumentRef(int) - Method in class ome.xml.meta.AggregateMetadata

getImageInstrumentRef(int) - Method in class ome.xml.meta.DummyMetadata

getImageInstrumentRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the InstrumentRef property of Image.

getImageInstrumentRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageLength() - Method in class loci.formats.tiff.IFD

Retrieves the image's length (TIFF tag ImageLength) from a given TIFF IFD.

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getImageMetadata(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Retrieves image metadata with non-core nodes removed.

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getImageMicrobeamManipulationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getImageMicrobeamManipulationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getImageMicrobeamManipulationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MicrobeamManipulationRef property of Image.

getImageMicrobeamManipulationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageName() - Method in class loci.formats.in.MetamorphHandler

getImageName(int) - Method in class loci.formats.in.SlideBook6Reader

getImageName() - Method in class loci.tests.testng.Configuration

getImageName(int) - Method in class ome.xml.meta.AggregateMetadata

getImageName(int) - Method in class ome.xml.meta.DummyMetadata

getImageName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Image.

getImageName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageNumber(String, int) - Method in class loci.formats.in.ZeissZVIReader

getImageOffset(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the image offset of the imageIndexth image.

getImageOffset() - Method in class ome.jxr.ifd.IFDMetadata

getImageReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getImageROIRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getImageROIRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getImageROIRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ROIRef property of Image.

getImageROIRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageROIRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getImageROIRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getImageROIRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ROIRef elements in Image.

getImageROIRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImageSequence(int) - Method in class loci.formats.in.DeltavisionReader

Get the image sequence string.

getImagesPerFile() - Method in class loci.formats.FileStitcher.ExternalSeries

getImagesPerFile(String, IFormatReader) - Static method in class loci.formats.FormatTools

getImageType() - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the image type.

getImageType(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getImageType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getImageType() - Method in class ome.jxr.ifd.IFDMetadata

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getImageWidth() - Method in class loci.formats.tiff.IFD

Retrieves the image's width (TIFF tag ImageWidth) from a given TIFF IFD.

getImageWidth() - Method in class ome.jxr.ifd.IFDMetadata

getImagingDevice() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the imaging device associated with this Frame.

getImagingEnvironment() - Method in class ome.xml.model.Image

getImagingEnvironmentAirPressure(int) - Method in class ome.xml.meta.AggregateMetadata

getImagingEnvironmentAirPressure(int) - Method in class ome.xml.meta.DummyMetadata

getImagingEnvironmentAirPressure(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AirPressure property of ImagingEnvironment.

getImagingEnvironmentAirPressure(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImagingEnvironmentCO2Percent(int) - Method in class ome.xml.meta.AggregateMetadata

getImagingEnvironmentCO2Percent(int) - Method in class ome.xml.meta.DummyMetadata

getImagingEnvironmentCO2Percent(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CO2Percent property of ImagingEnvironment.

getImagingEnvironmentCO2Percent(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImagingEnvironmentHumidity(int) - Method in class ome.xml.meta.AggregateMetadata

getImagingEnvironmentHumidity(int) - Method in class ome.xml.meta.DummyMetadata

getImagingEnvironmentHumidity(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Humidity property of ImagingEnvironment.

getImagingEnvironmentHumidity(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImagingEnvironmentMap(int) - Method in class ome.xml.meta.AggregateMetadata

Gets the Map value associated with this imaging environment

getImagingEnvironmentMap(int) - Method in class ome.xml.meta.DummyMetadata

Gets the Map value associated with this imaging environment

getImagingEnvironmentMap(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MapAnnotation values from a ImagingEnvironment.

getImagingEnvironmentMap(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Gets the Map value associated with this imaging environment

getImagingEnvironmentTemperature(int) - Method in class ome.xml.meta.AggregateMetadata

getImagingEnvironmentTemperature(int) - Method in class ome.xml.meta.DummyMetadata

getImagingEnvironmentTemperature(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Temperature property of ImagingEnvironment.

getImagingEnvironmentTemperature(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getImg() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getImgHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall height of the image in pixels.

getImgHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall height of the image in pixels, for the given resolution level.

getImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the image height in the reference grid.

getImgHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall height of the image in pixels.

getImgHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall height of the image in pixels, for the given resolution level.

getImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall height of the image in pixels, for the given resolution level.

getImgRes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the image resolution level to reconstruct from the codestream.

getImgULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the horizontal upper-left coordinate of the image in the reference grid.

getImgULX() - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.Tiler

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the vertical upper-left coordinate of the image in the reference grid.

getImgULY() - Method in interface jj2000.j2k.image.ImgData

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.Tiler

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid.

getImgULY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgULY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical coordinate of the image origin, the top-left corner, in the canvas system, on the reference grid at the specified resolution level.

getImgWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall width of the image in pixels.

getImgWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall width of the image in pixels, for the given (image) resolution level.

getImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the image width in the reference grid.

getImgWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall width of the image in pixels.

getImgWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall width of the image in pixels, for the given resolution level.

getImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall width of the image in pixels, for the given resolution level.

getImmersion(String) - Method in class loci.formats.FormatReader

Retrieves an Immersion enumeration value for the given String.

getImmersion() - Method in class loci.formats.in.ND2Handler

getImmersion() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the immersion from the objective lens string.

getImmersion() - Method in class ome.xml.model.Objective

getImplementationType(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the implementation type of this wavelet transform, WT_IMPL_FULL (full-page based transform).

getImplementationType(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the implementation type of this wavelet transform, WT_IMPL_FULL (full-page based transform).

getImplementationType(int) - Method in interface jj2000.j2k.wavelet.WaveletTransform

Returns the implementation type of this wavelet transform (WT_IMPL_LINE or WT_IMPL_FRAME) for the specified component, in the current tile.

getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the implementation type of this filter, as defined in this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT, WT_FILTER_FLOAT_CONVOL.

getIndent() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get indention (not sure of the units, think its spaces)

getIndention() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the number of spaces to indent the text in the cell

getIndentionOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the indent options bitmask (see corresponding bit getters that reference this field)

getIndex() - Method in class loci.formats.cache.CacheEvent

Gets the index relevant to the cache update, if any.

getIndex(int, int, int, int, int, int) - Method in class loci.formats.ChannelMerger

getIndex(int, int, int) - Method in class loci.formats.ChannelMerger

getIndex(int, int, int) - Method in class loci.formats.ChannelSeparator

getIndex(int, int, int, int, int, int) - Method in class loci.formats.ChannelSeparator

getIndex(int, int, int) - Method in class loci.formats.DimensionSwapper

getIndex(int, int, int, int, int, int) - Method in class loci.formats.DimensionSwapper

getIndex(int, int, int) - Method in class loci.formats.FileStitcher

getIndex(int, int, int, int, int, int) - Method in class loci.formats.FileStitcher

getIndex(int, int, int) - Method in class loci.formats.FormatReader

getIndex(int, int, int, int, int, int) - Method in class loci.formats.FormatReader

getIndex(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C and T coordinates (real sizes).

getIndex(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C, T, ModuloZ, ModuloC and ModuloT coordinates (effective sizes).

getIndex(String, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C and T coordinates (real sizes).

getIndex(String, int, int, int, int, int, int, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding to the given Z, C, T, ModuloZ, ModuloC, ModuloT coordinates (effective sizes).

getIndex(int, int, int) - Method in interface loci.formats.IFormatReader

Gets the rasterized index corresponding to the given Z, C and T coordinates (real sizes).

getIndex(int, int, int, int, int, int) - Method in interface loci.formats.IFormatReader

Gets the rasterized index corresponding to the given Z, C, T, moduloZ, moduloC and moduloT coordinates (effective sizes).

getIndex(int, int, int) - Method in class loci.formats.ImageReader

getIndex(int, int, int, int, int, int) - Method in class loci.formats.ImageReader

getIndex() - Method in class loci.formats.in.BaseZeissReader.Tag

getIndex(int, int, int) - Method in class loci.formats.in.FilePatternReader

getIndex() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the index associated with this Frame.

getIndex(int, int, int) - Method in class loci.formats.ReaderWrapper

getIndex(int, int, int, int, int, int) - Method in class loci.formats.ReaderWrapper

getIndex(Double, Double, Double, Double[]) - Method in class loci.plugins.macro.LociFunctions

getIndex() - Method in class loci.poi.hssf.record.SeriesIndexRecord

Get the index field for the SeriesIndex record.

getIndex() - Method in class loci.poi.hssf.record.StyleRecord

get the entire index field (including the type) (see bit getters that reference this method)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the index within the HSSFWorkbook (sequence within the collection of ExtnededFormat objects)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the index within the HSSFWorkbook (sequence within the collection of Font objects)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFPalette.CustomColor

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AQUA

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLACK

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BROWN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORAL

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW

getIndex() - Method in class loci.poi.hssf.util.HSSFColor

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GOLD

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIME

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.MAROON

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PINK

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PLUM

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.RED

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROSE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TAN

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TEAL

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.WHITE

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW

getIndex() - Method in class loci.poi.poifs.property.Property

get the index for this Property

getIndex(Object) - Method in class loci.poi.util.IntMapper

getIndex() - Method in class ome.xml.model.WellSample

getIndexCode() - Method in class loci.poi.hssf.record.FormatRecord

get the format index code (for built in formats)

getIndexColorModel() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getIndexCount() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the number of recorded indices at this Sequence.

getIndexedImage() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getIndexHash() - Static method in class loci.poi.hssf.util.HSSFColor

this function returns all colors in a hastable.

getIndexMax() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the maximum index value.

getIndexMin() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the minimum index value.

getIndexNumberFmtRecord() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the index number fmt record field for the LinkedData record.

getIndexOfColorValue() - Method in class loci.poi.hssf.record.TextRecord

Get the index of color value field for the Text record.

getIndexOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

The index within the string to which the specified formatting run applies.

getIndexToFirstSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to first sheet from supbook

getIndexToFontTable() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the index to font table field for the FontBasis record.

getIndexToLastSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to last sheet in supbook

getIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord

Convenience method to retrieve the index the name refers to.

getIndexToSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to sup book

getInfo() - Method in class loci.formats.in.SDTReader

Gets object containing SDT header information.

getInfo() - Method in class loci.plugins.prefs.Option

Gets documentation about the option.

getInfo(String) - Method in class loci.plugins.prefs.OptionsList

Gets the documentation for the option with the given key.

getInfoRecordAt(int) - Method in class loci.poi.hssf.record.ExtSSTRecord

getINI() - Method in class loci.tests.testng.Configuration

getIniFile(String) - Method in class loci.formats.in.FV1000Reader

getInputOrder() - Method in class loci.formats.DimensionSwapper

getInputOrder(int) - Method in class loci.plugins.in.ImporterOptions

getInputStream() - Method in class loci.common.NIOInputStream

Returns the underlying InputStream.

getInputStream() - Method in class loci.common.ZipHandle

Returns the DataInputStream corresponding to the backing Zip entry.

getInputStream(String) - Method in interface loci.formats.services.POIService

Retrieve an InputStream corresponding to the given file name.

getInputStream(String) - Method in class loci.formats.services.POIServiceImpl

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Returns a shared instance of a BaselineTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

Returns a shared instance of an EXIFGPSTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

Returns the shared instance of EXIFInteroperabilityTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

Returns a shared instance of an EXIFParentTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

Returns a shared instance of an EXIFTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

Returns a shared instance of a FaxTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

Returns a shared instance of a GeoTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace

getInstance() - Static method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat

getInstance() - Static method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat

getInstance(Class<T>) - Method in class loci.common.services.ServiceFactory

Retrieves an instance of a given service.

getInstance(int) - Static method in class loci.formats.gui.TwoChannelColorSpace

getInstance() - Method in class loci.poi.ddf.EscherRecord

Returns the instance part of the option record.

getInstance() - Static method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the singleton instance of the default SectionIDMap.

getInstance() - Static method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC

getInstance(int) - Static method in class loci.poi.util.BitFieldFactory

getInstitution() - Method in class ome.xml.model.Experimenter

getInstrument() - Method in class ome.xml.model.Detector

getInstrument() - Method in class ome.xml.model.Dichroic

getInstrument() - Method in class ome.xml.model.Filter

getInstrument() - Method in class ome.xml.model.FilterSet

getInstrument() - Method in class ome.xml.model.LightSource

getInstrument() - Method in class ome.xml.model.Objective

getInstrument(int) - Method in class ome.xml.model.OME

getInstrumentAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getInstrumentAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getInstrumentAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Instrument.

getInstrumentAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getInstrumentAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getInstrumentAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getInstrumentAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Instrument.

getInstrumentAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getInstrumentCount() - Method in class ome.xml.meta.AggregateMetadata

getInstrumentCount() - Method in class ome.xml.meta.DummyMetadata

getInstrumentCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Instrument elements.

getInstrumentCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getInstrumentID(int) - Method in class ome.xml.meta.AggregateMetadata

getInstrumentID(int) - Method in class ome.xml.meta.DummyMetadata

getInstrumentID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Instrument.

getInstrumentID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getInt(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the integer type attribute.

getInt(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an int value from a byte array

getInt(byte[]) - Static method in class loci.poi.util.LittleEndian

get an int value from the beginning of a byte array

getIntArray(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream

Gets the integer type attribute.

getIntArray() - Method in class loci.plugins.util.RecordedImageProcessor

getIntArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets the integer array from an IIOMetadataNode.

getIntAttribute(Node, String, int, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getIntAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getIntAttribute(Node, String, int, boolean, boolean, int, int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getIntAttribute(Node, String, boolean, int, int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getIntegerValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getIntegration() - Method in class ome.xml.model.DetectorSettings

getIntElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its integer value from an IIOMetadataNode.

getIntellectualProperty() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the IntellectualProperty flag.

getInterleaved() - Method in class ome.xml.model.Pixels

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the specified code-block in the current tile for the specified component (as a reference or copy).

getInternCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply the component transformation associated with the current tile.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component, using the 'transfer type' defined in the block given as argument.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns, in the blk argument, the block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply the inverse component transformation associated with the current tile.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler

Returns, in the blk argument, a block of image data containing the specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns a block of image data containing the specifed rectangular area, in the specified component, as a reference to the internal buffer (see below).

getInterpolate() - Method in class loci.plugins.util.RecordedImageProcessor

getInterpolatedPixel(double, double) - Method in class loci.plugins.util.RecordedImageProcessor

getInts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getInts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getInts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getIntValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock

getIris() - Method in class ome.xml.model.Objective

getItalic() - Method in class loci.poi.hssf.usermodel.HSSFFont

get whether to use italics or not

getIteration() - Method in class loci.poi.hssf.record.IterationRecord

get whether or not to iterate for calculations

getIterations() - Method in class loci.poi.hssf.record.CalcCountRecord

get the number of iterations to perform

getIterator() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getIterator() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getIterator() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getJavaDate(double) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a excel date, converts it into a Date.

getJavaDate(double, boolean) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given an Excel date with either 1900 or 1904 date windowing, converts it to a java.util.Date.

getJDKImageReaderWriterSPI(ServiceRegistry, String, boolean) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

getJPEGBuf() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the JPEG image buffer associated with this decompressor instance.

getJPEGSize() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the size of the JPEG image (in bytes) associated with this decompressor instance.

getJPEGTablesReader() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor

Retrieves a JPEG reader which supports native JPEG stream metadata.

getJustifyLast() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Dunno.

getKerSpecType(int) - Method in class jj2000.j2k.wavelet.WTFilterSpec

Returns the type of specification for the filters in the specified component and tile.

getKey() - Method in class loci.formats.in.BaseZeissReader.Tag

getKey(int) - Method in class loci.formats.in.BaseZeissReader.Tag

Return the string corresponding to the given ID.

getKey(int) - Method in class loci.formats.in.MetamorphReader

getKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation

getKey() - Method in class loci.plugins.prefs.Option

Gets the option's key name.

getKey() - Method in class loci.poi.util.BinaryTree.Node

getKey() - Method in class loci.tests.testng.ThreadNameBasedDiscriminator

getKeyboardShortcut() - Method in class loci.poi.hssf.record.NameRecord

returns the keyboard shortcut

getKeyForValue(Object) - Method in class loci.poi.util.BinaryTree

Returns the key to which this map maps the specified value.

getKeywords() - Method in class loci.poi.hpsf.SummaryInformation

Returns the keywords (or null).

getLabel() - Method in class loci.plugins.prefs.Option

Gets label describing the option.

getLabel(String) - Method in class loci.plugins.prefs.OptionsList

Gets the label for the option with the given key.

getLabelAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Label.

getLabelAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelColorRgb() - Method in class loci.poi.hssf.record.TickRecord

Get the label color rgb field for the Tick record.

getLabelFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Label.

getLabelFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Label.

getLabelFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Label.

getLabelFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Label.

getLabelFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Label.

getLabelFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the label frequency field for the CategorySeriesAxis record.

getLabelID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelID(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Label.

getLabelID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Label.

getLabelLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Label.

getLabelLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelPosition() - Method in class loci.poi.hssf.record.TickRecord

Get the label position field for the Tick record.

getLabels() - Method in class loci.plugins.config.FlexWidgets

getLabels() - Method in interface loci.plugins.config.IFormatWidgets

getLabels() - Method in class loci.plugins.config.ND2Widgets

getLabels() - Method in class loci.plugins.config.PictWidgets

getLabels() - Method in class loci.plugins.config.QTWidgets

getLabels() - Method in class loci.plugins.config.SDTWidgets

getLabels() - Method in class loci.plugins.config.TiffDelegateWidgets

getLabelStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Label.

getLabelStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Label.

getLabelStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Label.

getLabelStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelText(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Label.

getLabelText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Label.

getLabelTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Label.

getLabelTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Label.

getLabelTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Label.

getLabelTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Label.

getLabelVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelX(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Label.

getLabelX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLabelY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLabelY(int, int) - Method in class ome.xml.meta.DummyMetadata

getLabelY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Label.

getLabelY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLandscape() - Method in class loci.poi.hssf.record.PrintSetupRecord

getLandscape() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the landscape mode.

getLaserAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Laser.

getLaserAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserFrequencyMultiplication(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserFrequencyMultiplication(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserFrequencyMultiplication(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FrequencyMultiplication property of Laser.

getLaserFrequencyMultiplication(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserID(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Laser.

getLaserID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserLaserMedium(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserLaserMedium(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserLaserMedium(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LaserMedium property of Laser.

getLaserLaserMedium(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Laser.

getLaserLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Laser.

getLaserManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserMedium(String) - Method in class loci.formats.FormatReader

Retrieves an LaserMedium enumeration value for the given String.

getLaserMedium() - Method in class ome.xml.model.Laser

getLaserModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Laser.

getLaserModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserPockelCell(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserPockelCell(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserPockelCell(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PockelCell property of Laser.

getLaserPockelCell(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserPower() - Method in class loci.formats.in.PrairieMetadata

Gets the first laserPower recorded in the configuration.

getLaserPower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserPower(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserPower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of Laser.

getLaserPower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserPulse(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserPulse(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserPulse(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Pulse property of Laser.

getLaserPulse(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserPump(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserPump(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserPump(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Pump property of Laser.

getLaserPump(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserRepetitionRate(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserRepetitionRate(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserRepetitionRate(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RepetitionRate property of Laser.

getLaserRepetitionRate(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Laser.

getLaserSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserTuneable(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserTuneable(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserTuneable(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Tuneable property of Laser.

getLaserTuneable(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserType(String) - Method in class loci.formats.FormatReader

Retrieves an LaserType enumeration value for the given String.

getLaserType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserType(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Laser.

getLaserType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLaserWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLaserWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata

getLaserWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Wavelength property of Laser.

getLaserWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLast() - Method in class loci.formats.FilePattern

getLast() - Method in class loci.formats.FilePatternBlock

getLastAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last author (or null).

getLastBodyBuf() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the buffer of the body of the last encoded packet.

getLastBodyLen() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the length of the body of the last encoded packet, in bytes.

getLastCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getLastCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

gets the number of the last cell contained in this row PLUS ONE.

getLastChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getLastCol() - Method in class loci.poi.hssf.record.DimensionsRecord

get the last col number for the sheet

getLastCol() - Method in class loci.poi.hssf.record.RowRecord

get the logical col number for the last cell this row plus one (0 based index)

getLastColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the last column this record defines formatting info for

getLastColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getLastColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg

getLastColumn() - Method in class loci.poi.hssf.record.MulBlankRecord

ending column (last cell this holds in the row)

getLastColumn() - Method in class loci.poi.hssf.record.MulRKRecord

ending column (last cell this holds in the row)

getLastColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getLastColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg

getLastMSOSPID() - Method in class loci.poi.ddf.EscherDgRecord

The last shape id used in this drawing group.

getLastName() - Method in class ome.xml.model.Experimenter

getLastPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getLastPrinted() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last printed time (or null).

getLastRow() - Method in class loci.poi.hssf.record.DimensionsRecord

get the last row number for the sheet

getLastRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getLastRow() - Method in class loci.poi.hssf.record.formula.AreaPtg

getLastRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference

getLastRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getLastRowAdd1() - Method in class loci.poi.hssf.record.IndexRecord

getLastRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getLastRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the last row on the sheet

getLastSaveDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last save time (or null).

getLatestVersion() - Method in interface loci.formats.services.OMEXMLService

Retrieves the latest supported version of the OME-XML schema.

getLatestVersion() - Method in class loci.formats.services.OMEXMLServiceImpl

getLayers() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets layers

getLeaderCount(int) - Method in class ome.xml.meta.AggregateMetadata

getLeaderCount(int) - Method in class ome.xml.meta.DummyMetadata

getLeaderCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Leader elements.

getLeaderCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLeafChildCount() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

getLeft() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the left side of the footer.

getLeft() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the left side of the header.

getLeft(int) - Method in class loci.poi.util.BinaryTree.Node

get the left node

getLeft() - Method in class mdbtools.dbengine.sql.Condition

getLeft() - Method in class mdbtools.dbengine.sql.Equation

getLeft() - Method in class mdbtools.dbengine.sql.Join

getLeftBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getLeftBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the left border color

getLeftChild(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

get a node's left child.

getLeftCol() - Method in class loci.poi.hssf.model.Sheet

getLeftCol() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the leftmost column displayed in the window

getLeftCol() - Method in class loci.poi.hssf.usermodel.HSSFSheet

The left col in the visible view when the sheet is first viewed after opening it in a viewer

getLeftColumn() - Method in class loci.poi.hssf.record.PaneRecord

Get the left column field for the Pane record.

getLeftRowGutter() - Method in class loci.poi.hssf.record.GutsRecord

get the size of the gutter that appears at the left of the rows

getLeftToRight() - Method in class loci.poi.hssf.record.PrintSetupRecord

getLeftToRight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the left to right print order.

getLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box length.

getLength() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getLength() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Returns the current length of the buffer, in bytes.

getLength() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Returns the current length of the entire bit stream.

getLength() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Returns the current length of the entire bit stream.

getLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the length of the header.

getLength(RandomAccessInputStream, int) - Method in class loci.formats.in.DicomReader

getLength(long) - Method in class loci.formats.in.OBFReader

getLength() - Method in class loci.poi.hssf.record.RecordInputStream

getLength() - Method in class loci.poi.poifs.storage.RawDataBlock

getLength() - Method in class ome.xml.model.BinData

getLengths() - Method in class loci.formats.cache.CacheStrategy

getLengths() - Method in interface loci.formats.cache.ICacheStrategy

Gets the lengths of all the axes.

getLengths(IFormatReader) - Static method in class loci.formats.tools.CacheConsole

Helper utility for constructing lengths array, used by main.

getLenRefSubexpression() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getLensNA() - Method in class loci.formats.in.MetamorphHandler

getLensNA() - Method in class ome.xml.model.Objective

getLensName(int) - Method in class loci.formats.in.SlideBook6Reader

getLetter() - Method in class loci.formats.ResourceNamer

Returns a String representing a single letter (in the case where the class instance has been initialized with a resource count lower than 26) or a concatenation of two letters (if resource count is higher than 26).

getLevels(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the decomposition number of levels in component 'n' and tile 't'.

getLH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the LH (vertical high-pass) child subband of this subband.

getLH() - Method in class jj2000.j2k.wavelet.Subband

Returns the LH (vertical high-pass) child subband of this subband.

getLH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the LH (vertical high-pass) child subband of this subband.

getLicenseCode() - Method in interface loci.formats.services.LuraWaveService

Retrieves the current license code as a string.

getLicenseCode() - Method in class loci.formats.services.LuraWaveServiceImpl

getLightEmittingDiodeAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of LightEmittingDiode.

getLightEmittingDiodeAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeID(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of LightEmittingDiode.

getLightEmittingDiodeID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of LightEmittingDiode.

getLightEmittingDiodeLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of LightEmittingDiode.

getLightEmittingDiodeManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of LightEmittingDiode.

getLightEmittingDiodeModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodePower(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodePower(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodePower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Power property of LightEmittingDiode.

getLightEmittingDiodePower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightEmittingDiodeSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightEmittingDiodeSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightEmittingDiodeSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of LightEmittingDiode.

getLightEmittingDiodeSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPath() - Method in class ome.xml.model.Channel

getLightPathAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of LightPath.

getLightPathAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in LightPath.

getLightPathAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathDichroicRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathDichroicRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathDichroicRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DichroicRef property of LightPath.

getLightPathDichroicRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathEmissionFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the EmissionFilterRef property of LightPath.

getLightPathEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathEmissionFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of EmissionFilterRef elements in LightPath.

getLightPathEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathExcitationFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExcitationFilterRef property of LightPath.

getLightPathExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightPathExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightPathExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightPathExcitationFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ExcitationFilterRef elements in LightPath.

getLightPathExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightSource(int) - Method in class loci.tests.testng.Configuration

getLightSource(int) - Method in class ome.xml.model.Instrument

getLightSource() - Method in class ome.xml.model.LightSourceSettings

getLightSourceAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightSourceAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightSourceAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in LightSource.

getLightSourceAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightSourceCount(int) - Method in class ome.xml.meta.AggregateMetadata

getLightSourceCount(int) - Method in class ome.xml.meta.DummyMetadata

getLightSourceCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of LightSource elements.

getLightSourceCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLightSourceSettings() - Method in class ome.xml.model.Channel

getLightSourceSettings(int) - Method in class ome.xml.model.MicrobeamManipulation

getLightSourceType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLightSourceType(int, int) - Method in class ome.xml.meta.DummyMetadata

getLightSourceType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the type of a LightSource.

getLightSourceType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLimit() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getLimitedSIndexFromSlope(float) - Static method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Returns the index of a slope for the summary table, limiting to the admissible values.

getLine(double, double, double, double) - Method in class loci.plugins.util.RecordedImageProcessor

getLineAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getLineAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Line.

getLineAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineCap(String) - Method in class loci.formats.FormatReader

Retrieves an LineCap enumeration value for the given String.

getLineCap() - Method in class ome.xml.model.Shape

getLineColor() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the line color field for the LineFormat record.

getLineCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the line count or 0 if the DocumentSummaryInformation does not contain a line count.

getLineFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Line.

getLineFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Line.

getLineFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Line.

getLineFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Line.

getLineFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Line.

getLineFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineID(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Line.

getLineID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Line.

getLineLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Line.

getLineLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineMarkerEnd(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineMarkerEnd(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineMarkerEnd(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MarkerEnd property of Line.

getLineMarkerEnd(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineMarkerStart(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineMarkerStart(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineMarkerStart(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MarkerStart property of Line.

getLineMarkerStart(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLinePattern() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the line pattern field for the LineFormat record.

getLinesPerFrame() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the lines per frame for this Frame.

getLineStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Line.

getLineStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Line.

getLineStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Line.

getLineStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineStyle() - Method in class loci.poi.hssf.usermodel.HSSFShape

getLineStyleColor() - Method in class loci.poi.hssf.usermodel.HSSFShape

The color applied to the lines of this shape.

getLineText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineText(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Line.

getLineText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Line.

getLineTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Line.

getLineTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Line.

getLineTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Line.

getLineTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Line.

getLineVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineWidth() - Method in class jj2000.j2k.util.MsgPrinter

Returns the line width that is used for formatting.

getLineWidth() - Method in class loci.poi.hssf.usermodel.HSSFShape

getLineX1(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineX1(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineX1(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X1 property of Line.

getLineX1(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineX2(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineX2(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineX2(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X2 property of Line.

getLineX2(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineY1(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineY1(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineY1(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y1 property of Line.

getLineY1(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLineY2(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLineY2(int, int) - Method in class ome.xml.meta.DummyMetadata

getLineY2(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y2 property of Line.

getLineY2(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLink1() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the link 1 field for the ObjectLink record.

getLink2() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the link 2 field for the ObjectLink record.

getLinkedAnnotation(int) - Method in class ome.xml.model.Annotation

getLinkedAnnotation(int) - Method in class ome.xml.model.Channel

getLinkedAnnotation(int) - Method in class ome.xml.model.Dataset

getLinkedAnnotation(int) - Method in class ome.xml.model.Detector

getLinkedAnnotation(int) - Method in class ome.xml.model.Dichroic

getLinkedAnnotation(int) - Method in class ome.xml.model.Experimenter

getLinkedAnnotation(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedAnnotation(int) - Method in class ome.xml.model.Filter

getLinkedAnnotation(int) - Method in class ome.xml.model.Image

getLinkedAnnotation(int) - Method in class ome.xml.model.Instrument

getLinkedAnnotation(int) - Method in class ome.xml.model.LightPath

getLinkedAnnotation(int) - Method in class ome.xml.model.LightSource

getLinkedAnnotation(int) - Method in class ome.xml.model.Objective

getLinkedAnnotation(int) - Method in class ome.xml.model.Plane

getLinkedAnnotation(int) - Method in class ome.xml.model.Plate

getLinkedAnnotation(int) - Method in class ome.xml.model.PlateAcquisition

getLinkedAnnotation(int) - Method in class ome.xml.model.Project

getLinkedAnnotation(int) - Method in class ome.xml.model.Reagent

getLinkedAnnotation(int) - Method in class ome.xml.model.ROI

getLinkedAnnotation(int) - Method in class ome.xml.model.Screen

getLinkedAnnotation(int) - Method in class ome.xml.model.Shape

getLinkedAnnotation(int) - Method in class ome.xml.model.Well

getLinkedChannel(int) - Method in class ome.xml.model.Annotation

getLinkedChannel(int) - Method in class ome.xml.model.FilterSet

getLinkedDataset(int) - Method in class ome.xml.model.Annotation

getLinkedDataset(int) - Method in class ome.xml.model.Experimenter

getLinkedDataset(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedDataset(int) - Method in class ome.xml.model.Image

getLinkedDataset(int) - Method in class ome.xml.model.Project

getLinkedDetector(int) - Method in class ome.xml.model.Annotation

getLinkedDichroic(int) - Method in class ome.xml.model.Annotation

getLinkedDichroic() - Method in class ome.xml.model.FilterSet

getLinkedDichroic() - Method in class ome.xml.model.LightPath

getLinkedEmissionFilter(int) - Method in class ome.xml.model.FilterSet

getLinkedEmissionFilter(int) - Method in class ome.xml.model.LightPath

getLinkedExcitationFilter(int) - Method in class ome.xml.model.FilterSet

getLinkedExcitationFilter(int) - Method in class ome.xml.model.LightPath

getLinkedExperiment(int) - Method in class ome.xml.model.Experimenter

getLinkedExperiment() - Method in class ome.xml.model.Image

getLinkedExperimenter(int) - Method in class ome.xml.model.Annotation

getLinkedExperimenter() - Method in class ome.xml.model.Dataset

getLinkedExperimenter() - Method in class ome.xml.model.Experiment

getLinkedExperimenter(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedExperimenter() - Method in class ome.xml.model.Image

getLinkedExperimenter() - Method in class ome.xml.model.MicrobeamManipulation

getLinkedExperimenter() - Method in class ome.xml.model.Project

getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Annotation

getLinkedExperimenterGroup() - Method in class ome.xml.model.Dataset

getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Experimenter

getLinkedExperimenterGroup() - Method in class ome.xml.model.Image

getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Leader

getLinkedExperimenterGroup() - Method in class ome.xml.model.Project

getLinkedFilter(int) - Method in class ome.xml.model.Annotation

getLinkedFilterSet() - Method in class ome.xml.model.Channel

getLinkedFilterSet(int) - Method in class ome.xml.model.Dichroic

getLinkedFilterSetEmissionFilter(int) - Method in class ome.xml.model.Filter

getLinkedFilterSetExcitationFilter(int) - Method in class ome.xml.model.Filter

getLinkedImage(int) - Method in class ome.xml.model.Annotation

getLinkedImage(int) - Method in class ome.xml.model.Dataset

getLinkedImage(int) - Method in class ome.xml.model.Experiment

getLinkedImage(int) - Method in class ome.xml.model.Experimenter

getLinkedImage(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedImage(int) - Method in class ome.xml.model.Instrument

getLinkedImage(int) - Method in class ome.xml.model.MicrobeamManipulation

getLinkedImage(int) - Method in class ome.xml.model.ROI

getLinkedImage() - Method in class ome.xml.model.WellSample

getLinkedInstrument(int) - Method in class ome.xml.model.Annotation

getLinkedInstrument() - Method in class ome.xml.model.Image

getLinkedLaser(int) - Method in class ome.xml.model.Pump

getLinkedLeader(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedLightPath(int) - Method in class ome.xml.model.Annotation

getLinkedLightPath(int) - Method in class ome.xml.model.Dichroic

getLinkedLightPathEmissionFilter(int) - Method in class ome.xml.model.Filter

getLinkedLightPathExcitationFilter(int) - Method in class ome.xml.model.Filter

getLinkedLightSource(int) - Method in class ome.xml.model.Annotation

getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Experimenter

getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Image

getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.ROI

getLinkedObjective(int) - Method in class ome.xml.model.Annotation

getLinkedPlane(int) - Method in class ome.xml.model.Annotation

getLinkedPlate(int) - Method in class ome.xml.model.Annotation

getLinkedPlate(int) - Method in class ome.xml.model.Screen

getLinkedPlateAcquisition(int) - Method in class ome.xml.model.Annotation

getLinkedPlateAcquisition(int) - Method in class ome.xml.model.WellSample

getLinkedProject(int) - Method in class ome.xml.model.Annotation

getLinkedProject(int) - Method in class ome.xml.model.Dataset

getLinkedProject(int) - Method in class ome.xml.model.Experimenter

getLinkedProject(int) - Method in class ome.xml.model.ExperimenterGroup

getLinkedPump() - Method in class ome.xml.model.Laser

getLinkedReagent(int) - Method in class ome.xml.model.Annotation

getLinkedReagent() - Method in class ome.xml.model.Well

getLinkedROI(int) - Method in class ome.xml.model.Annotation

getLinkedROI(int) - Method in class ome.xml.model.Image

getLinkedROI(int) - Method in class ome.xml.model.MicrobeamManipulation

getLinkedScreen(int) - Method in class ome.xml.model.Annotation

getLinkedScreen(int) - Method in class ome.xml.model.Plate

getLinkedShape(int) - Method in class ome.xml.model.Annotation

getLinkedWell(int) - Method in class ome.xml.model.Annotation

getLinkedWell(int) - Method in class ome.xml.model.Reagent

getLinkedWellSample(int) - Method in class ome.xml.model.Image

getLinkedWellSample(int) - Method in class ome.xml.model.PlateAcquisition

getLinksDirty() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns true if the custom links are dirty.

getLinkType() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the link type field for the LinkedData record.

getListAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getListAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a ListAnnotation.

getListAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of ListAnnotation.

getListAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of ListAnnotation.

getListAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getListAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ListAnnotation elements.

getListAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of ListAnnotation.

getListAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of ListAnnotation.

getListAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getListAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getListAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of ListAnnotation.

getListAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getListeners(POIFSDocumentPath, String) - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderRegistry

get am iterator of listeners for a particular document

getLL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the LL child subband of this subband.

getLL() - Method in class jj2000.j2k.wavelet.Subband

Returns the LL child subband of this subband.

getLL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the LL child subband of this subband.

getLoadList(int[]) - Method in class loci.formats.cache.CacheStrategy

getLoadList(int[]) - Method in interface loci.formats.cache.ICacheStrategy

Gets the indices of the objects to cache, surrounding the object at the given position.

getLoc() - Method in class loci.poi.hssf.model.Sheet

Returns the location pointer to the first record to look for when adding rows/values

getLocation() - Method in class loci.plugins.in.ImporterOptions

getLocationFromResourceName(Location, String, int, String) - Method in class loci.formats.ResourceNamer

Creates a new Location instance using the provided parent path and child node name.

getLocationInfo() - Method in class loci.plugins.in.ImporterOptions

getLocations() - Method in class loci.plugins.in.ImporterOptions

getLocked() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the cell's using this style are to be locked

getLocked() - Method in class ome.xml.model.Shape

getLogger(Class) - Static method in class loci.poi.util.POILogFactory

Get a logger, based on a class name

getLogger(String) - Static method in class loci.poi.util.POILogFactory

Get a logger, based on a String

getLong(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a long value from a byte array

getLong(byte[]) - Static method in class loci.poi.util.LittleEndian

get a long value from the beginning of a byte array

getLongAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getLongAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a LongAnnotation.

getLongAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of LongAnnotation.

getLongAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of LongAnnotation.

getLongAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of LongAnnotation elements.

getLongAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of LongAnnotation.

getLongAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of LongAnnotation.

getLongAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of LongAnnotation.

getLongAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLongAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getLongAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getLongAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of LongAnnotation.

getLongAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Convers an Index16ColorModel to a 2D short array.

getLookupTable(Map) - Method in class loci.formats.in.AmiraReader

getLookupTable() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the color lookup table stored in the file, or null if a lookup table is not present.

getLookupTableComponentCount() - Method in class loci.formats.ChannelFiller

Gets the number of color components in the lookup table.

getLossless() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets lossless.

getLossless() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets encodingRate

getLotNumber() - Method in class ome.xml.model.ManufacturerSpec

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the time-reversed low-pass synthesis waveform of the filter, which is the low-pass filter.

getLPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the equivalent low-pass synthesis waveform of a cascade of filters, given the syhthesis waveform of the previous stage.

getLSMFileFromSeries(int) - Method in class loci.formats.in.ZeissLSMReader

getLUT(IndexColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Gets the LUT from the IndexColorModel as an two-dimensional byte array.

getLUT() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the LUT.

getLutNames() - Method in class loci.formats.in.LeicaHandler

getLutUpdateMode() - Method in class loci.plugins.util.RecordedImageProcessor

getMagnification(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getMagnification() - Method in class loci.formats.in.ND2Handler

getMagnification() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the magnification from the objective lens string.

getMagnification(int) - Method in class loci.formats.in.SlideBook6Reader

getMagnification() - Method in class loci.formats.in.SVSReader

getMagnitudes() - Method in class loci.formats.in.IM3Reader.Spectrum

getMainDefDecompType() - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the main default decomposition type.

getMainDefLevels() - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the main default decomposition number of levels.

getMajorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the major increment field for the ValueRange record.

getMajorTickType() - Method in class loci.poi.hssf.record.TickRecord

Get the major tick type field for the Tick record.

getMajorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the major unit field for the AxisOptions record.

getMajorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the major unit value field for the AxisOptions record.

getManager() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the manager (or null).

getManufacturer() - Method in class ome.xml.model.ManufacturerSpec

getMap() - Method in class loci.formats.tools.AmiraParameters

getMap() - Method in class ome.xml.model.GenericExcitationSource

getMap() - Method in class ome.xml.model.ImagingEnvironment

getMapAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getMapAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a MapAnnotation.

getMapAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of MapAnnotation.

getMapAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of MapAnnotation.

getMapAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of MapAnnotation elements.

getMapAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of MapAnnotation.

getMapAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of MapAnnotation.

getMapAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getMapAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getMapAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of MapAnnotation.

getMapAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMapAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

Gets the Map value associated with this annotation

getMapAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

Gets the Map value associated with this annotation

getMapAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the values from a MapAnnotation.

getMapAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

Gets the Map value associated with this annotation

getMappedBuffer(int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

Returns a MappedByteBuffer which memory maps at least from the channel position corresponding to the current stream position to len bytes beyond.

getMappedFile(String) - Static method in class loci.common.Location

Gets the random access handle for the given id.

getMappedId(String) - Static method in class loci.common.Location

Gets the actual filename on disk for the given id.

getMargin(short) - Method in class loci.poi.hssf.model.Sheet

Gets the size of the margin in inches.

getMargin() - Method in class loci.poi.hssf.record.BottomMarginRecord

Get the margin field for the BottomMargin record.

getMargin() - Method in class loci.poi.hssf.record.LeftMarginRecord

Get the margin field for the LeftMargin record.

getMargin() - Method in interface loci.poi.hssf.record.Margin

Get the margin field for the Margin.

getMargin() - Method in class loci.poi.hssf.record.RightMarginRecord

Get the margin field for the RightMargin record.

getMargin() - Method in class loci.poi.hssf.record.TopMarginRecord

Get the margin field for the TopMargin record.

getMargin(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the size of the margin in inches.

getMarginBottom() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

Gets the bottom margin within the textbox.

getMarginLeft() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getMarginRight() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getMargins() - Method in class loci.poi.hssf.model.Sheet

Returns the array of margins.

getMarginTop() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getMarker(String) - Method in class loci.formats.FormatReader

Retrieves an Marker enumeration value for the given String.

getMarker() - Method in class loci.poi.ddf.EscherBitmapBlip

getMarkerEnd() - Method in class ome.xml.model.Line

getMarkerEnd() - Method in class ome.xml.model.Polyline

getMarkerStart() - Method in class ome.xml.model.Line

getMarkerStart() - Method in class ome.xml.model.Polyline

getMask() - Method in class loci.plugins.util.RecordedImageProcessor

getMask() - Method in class ome.xml.model.BinData

getMaskAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Mask.

getMaskAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskArray() - Method in class loci.plugins.util.RecordedImageProcessor

getMaskFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Mask.

getMaskFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Mask.

getMaskFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Mask.

getMaskFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Mask.

getMaskFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Mask.

getMaskFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskHeight(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskHeight(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskHeight(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Height property of Mask.

getMaskHeight(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskID(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Mask.

getMaskID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Mask.

getMaskLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Mask.

getMaskLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Mask.

getMaskStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Mask.

getMaskStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Mask.

getMaskStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskText(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Mask.

getMaskText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Mask.

getMaskTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Mask.

getMaskTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Mask.

getMaskTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Mask.

getMaskTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Mask.

getMaskVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Width property of Mask.

getMaskWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskX(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Mask.

getMaskX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMaskY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMaskY(int, int) - Method in class ome.xml.meta.DummyMetadata

getMaskY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Mask.

getMaskY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMax() - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each tile-component

getMax() - Method in class loci.plugins.util.RecordedImageProcessor

getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Returns the number of bytes remaining available in the bit stream.

getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Returns the number of bytes remaining available in the bit stream.

getMaxBitDepth() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getMaxCBlkHeight() - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the maximum code-block's height

getMaxCBlkWidth() - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the maximum code-block's width

getMaxChange() - Method in class loci.poi.hssf.record.DeltaRecord

get the maximum change

getMaxCompHeight() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getMaxCompImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the maximum height among all components

getMaxCompImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the maximum width among all components

getMaxCompWidth() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getMaxFieldCount(Integer) - Static method in class loci.formats.FormatTools

getMaximumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the maximum axis value field for the ValueRange record.

getMaximumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the maximum category field for the AxisOptions record.

getMaximumFieldCount() - Method in class ome.xml.model.PlateAcquisition

getMaximumSize() - Method in class loci.formats.gui.CacheIndicator

getMaximumSize() - Method in class loci.formats.gui.DataConverter.RowPanel

getMaxInComp(int) - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each tile for specified component

getMaxInTile(int) - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each component in specified tile

getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the maximum number of magnitude bits in any subband in the current tile.

getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband of the current tile.

getMaxMagBitsDerived(Subband, int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband in the given tile-component if derived quantization is used

getMaxMagBitsExpounded(Subband, int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband in the given tile-component if expounded quantization is used

getMaxMagBitsRev(Subband, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband of the current tile if reversible quantization is used

getMaxThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

getMaxTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the horizontal index of the rightmost column of tiles.

getMaxTileX() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getMaxTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the vertical index of the bottom row of tiles.

getMaxTileY() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getMaxValue() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getMaxValue() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getMaxX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the column immediatetely to the right of the rightmost column of the image.

getMaxY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the Y coordinate of the row immediately below the bottom row of the image.

getMCUHeight(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the MCU block height for the given level of chrominance subsampling.

getMCUWidth(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the MCU block width for the given level of chrominance subsampling.

getMD5() - Method in class loci.tests.testng.Configuration

getMDBFile(String) - Method in class loci.formats.in.ZeissLSMReader

getMeasurementTime() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getMedium(String) - Method in class loci.formats.FormatReader

Retrieves an Medium enumeration value for the given String.

getMedium() - Method in class ome.xml.model.ObjectiveSettings

getMember(String) - Method in interface loci.formats.services.JHDFService

Retrieves the all members of a group.

getMember(String) - Method in class loci.formats.services.JHDFServiceImpl

getMemoFile(String) - Method in class loci.formats.Memoizer

Constructs a File object from id string.

getMemory() - Method in class loci.tests.testng.Configuration

getMemoryUsage() - Method in class loci.plugins.in.ImportProcess

Gets a projection of required memory in bytes.

getMergeCells() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to merge cells

getMergedRegionAt(int) - Method in class loci.poi.hssf.model.Sheet

getMergedRegionAt(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the region at a particular index

getMessage() - Method in enum loci.plugins.in.ImportStep

getMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the current IIOMetadata object.

getMetadata() - Method in class loci.common.xml.MetadataHandler

getMetadata() - Method in class loci.formats.in.ND2Handler

getMetadata() - Method in class ome.jxr.JXRReader

getMetadataFile() - Method in class ome.xml.model.BinaryOnly

getMetadataLevel() - Method in class loci.formats.in.DefaultMetadataOptions

getMetadataLevel() - Method in interface loci.formats.in.MetadataOptions

getMetadataOnly() - Method in class ome.xml.model.Pixels

getMetadataOptions() - Method in class loci.formats.DelegateReader

getMetadataOptions() - Method in class loci.formats.FormatReader

getMetadataOptions() - Method in class loci.formats.ImageReader

getMetadataOptions() - Method in interface loci.formats.IMetadataConfigurable

getMetadataOptions() - Method in class loci.formats.ReaderWrapper

getMetadataRetrieve() - Method in class loci.formats.FormatWriter

getMetadataRetrieve() - Method in interface loci.formats.IFormatWriter

Retrieves the current metadata retrieval object for this writer.

getMetadataRetrieve() - Method in class loci.formats.ImageWriter

getMetadataRetrieve() - Method in class loci.formats.WriterWrapper

getMetadataRoot(String) - Method in class loci.formats.in.LIFReader

getMetadataStore() - Method in class loci.formats.FileStitcher

getMetadataStore() - Method in class loci.formats.FormatReader

getMetadataStore() - Method in interface loci.formats.IFormatReader

Retrieves the current metadata store for this reader.

getMetadataStore() - Method in class loci.formats.ImageReader

getMetadataStore() - Method in class loci.formats.in.FilePatternReader

getMetadataStore() - Method in class loci.formats.Memoizer

getMetadataStore() - Method in class loci.formats.ReaderWrapper

getMetadataStoreForConversion() - Method in class loci.formats.in.OMETiffReader

Returns a MetadataStore that is populated in such a way as to be usable by an IFormatWriter.

getMetadataStoreForDisplay() - Method in class loci.formats.in.OMETiffReader

Returns a MetadataStore that is populated in such a way as to produce valid OME-XML.

getMetadataStoreRoot() - Method in class loci.formats.FileStitcher

getMetadataStoreRoot() - Method in class loci.formats.FormatReader

getMetadataStoreRoot() - Method in interface loci.formats.IFormatReader

Retrieves the current metadata store's root object.

getMetadataStoreRoot() - Method in class loci.formats.ImageReader

getMetadataStoreRoot() - Method in class loci.formats.in.FilePatternReader

getMetadataStoreRoot() - Method in class loci.formats.ReaderWrapper

getMetadataString(String) - Method in class loci.plugins.in.ImporterMetadata

Returns a string with each key/value pair on its own line.

getMetadataType() - Method in enum loci.formats.tiff.PhotoInterp

Retrieves the metadata type of the photometric interpretation.

getMetadataValue(String) - Method in class loci.formats.FormatReader

getMetadataValue(String) - Method in interface loci.formats.IFormatReader

Obtains the specified metadata field's value for the current file.

getMetadataValue(String) - Method in class loci.formats.ImageReader

getMetadataValue(String) - Method in class loci.formats.in.FilePatternReader

getMetadataValue(String) - Method in class loci.formats.ReaderWrapper

getMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions

getMethod() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the method to define the color space.

getMethodForMQLengthCalc() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets methodForMQLengthCalc

getMethodForMQTermination() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets methodForMQTermination

getMethodStack() - Method in class loci.plugins.util.BFVirtualStack

getMethodStack() - Method in class loci.plugins.util.RecordedImageProcessor

getMicrobeamManipulation(int) - Method in class ome.xml.model.Experiment

getMicrobeamManipulation() - Method in class ome.xml.model.LightSourceSettings

getMicrobeamManipulationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationCount(int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of MicrobeamManipulation elements.

getMicrobeamManipulationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationDescription(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of MicrobeamManipulation.

getMicrobeamManipulationDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationExperimenterRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationExperimenterRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationExperimenterRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of MicrobeamManipulation.

getMicrobeamManipulationExperimenterRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationID(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of MicrobeamManipulation.

getMicrobeamManipulationID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Attenuation property of LightSourceSettings.

getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of LightSourceSettings elements in MicrobeamManipulation.

getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of LightSourceSettings.

getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Wavelength property of LightSourceSettings.

getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of MicrobeamManipulationRef elements.

getMicrobeamManipulationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationROIRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationROIRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationROIRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ROIRef property of MicrobeamManipulation.

getMicrobeamManipulationROIRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationROIRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationROIRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationROIRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ROIRef elements in MicrobeamManipulation.

getMicrobeamManipulationROIRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicrobeamManipulationType(String) - Method in class loci.formats.FormatReader

Retrieves an MicrobeamManipulationType enumeration value for the given String.

getMicrobeamManipulationType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getMicrobeamManipulationType(int, int) - Method in class ome.xml.meta.DummyMetadata

getMicrobeamManipulationType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of MicrobeamManipulation.

getMicrobeamManipulationType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicronsPerPixelX() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the microns per pixel along X for this Frame.

getMicronsPerPixelY() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the microns per pixel along Y for this Frame.

getMicroscope() - Method in class ome.xml.model.Instrument

getMicroscopeLotNumber(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeLotNumber(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeLotNumber(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Microscope.

getMicroscopeLotNumber(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicroscopeManufacturer(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeManufacturer(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeManufacturer(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Microscope.

getMicroscopeManufacturer(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicroscopeModel(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeModel(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeModel(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Microscope.

getMicroscopeModel(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicroscopeSerialNumber(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeSerialNumber(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeSerialNumber(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Microscope.

getMicroscopeSerialNumber(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMicroscopeType(String) - Method in class loci.formats.FormatReader

Retrieves an MicroscopeType enumeration value for the given String.

getMicroscopeType(int) - Method in class ome.xml.meta.AggregateMetadata

getMicroscopeType(int) - Method in class ome.xml.meta.DummyMetadata

getMicroscopeType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Microscope.

getMicroscopeType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getMiddleName() - Method in class ome.xml.model.Experimenter

getMillisFromTicks(long, long) - Static method in class loci.common.DateTools

Converts from two-word tick representation to milliseconds.

getMIMEType() - Method in class ome.xml.model.BinaryFile

getMin() - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each tile-component

getMin() - Method in class loci.plugins.util.RecordedImageProcessor

getMinimumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the minimum axis value field for the ValueRange record.

getMinimumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minimum category field for the AxisOptions record.

getMinimumSize() - Method in class loci.formats.gui.CacheIndicator

getMinInComp(int) - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each tile for specified component

getMinInTile(int) - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each component in specified tile

getMinMaxCalculator() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getMinMaxStore() - Method in class loci.formats.MinMaxCalculator

Retrieves the current active min-max store for the calculator.

getMinorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the minor increment field for the ValueRange record.

getMinorTickType() - Method in class loci.poi.hssf.record.TickRecord

Get the minor tick type field for the Tick record.

getMinorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minor unit field for the AxisOptions record.

getMinorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minor unit value field for the AxisOptions record.

getMinorVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the minor version of this file type box.

getMinThreshold() - Method in class loci.plugins.util.RecordedImageProcessor

getMinTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the horizontal index of the leftmost column of tiles.

getMinTileX() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getMinTileX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMinTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the vertical index of the uppermost row of tiles.

getMinTileY() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter

getMinTileY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMinX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the leftmost column of the image.

getMinX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets minX

getMinX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMinY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the uppermost row of the image.

getMinY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets minY

getMinY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getMMClipCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the mmclip count or 0 if the DocumentSummaryInformation does not contain a mmclip count.

getModalities() - Method in class loci.formats.in.ND2Handler

getModality(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getMode() - Method in class loci.poi.hssf.record.RefModeRecord

get the reference mode to use (HSSF uses/assumes A1)

getModel() - Method in class ome.xml.model.ManufacturerSpec

getModelObject(String) - Method in interface ome.xml.model.OMEModel

getModelObject(String) - Method in class ome.xml.model.OMEModelImpl

getModelObjects() - Method in interface ome.xml.model.OMEModel

getModelObjects() - Method in class ome.xml.model.OMEModelImpl

getModuloAlong(OMEXMLMetadata, String, int) - Method in class loci.formats.services.OMEXMLServiceImpl

Create a Modulo corresponding to the given ModuloAlong* tag.

getModuloAlongC(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongC annotation in the given Image in the given OME-XML metadata object.

getModuloAlongC(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

getModuloAlongT(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongT annotation in the given Image in the given OME-XML metadata object.

getModuloAlongT(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

getModuloAlongZ(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongZ annotation in the given Image in the given OME-XML metadata object.

getModuloAlongZ(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl

getModuloC() - Method in class loci.formats.FormatReader

getModuloC() - Method in interface loci.formats.IFormatReader

getModuloC() - Method in class loci.formats.ImageReader

getModuloC() - Method in class loci.formats.in.FilePatternReader

getModuloC() - Method in class loci.formats.ReaderWrapper

getModuloT() - Method in class loci.formats.FormatReader

getModuloT() - Method in interface loci.formats.IFormatReader

getModuloT() - Method in class loci.formats.ImageReader

getModuloT() - Method in class loci.formats.in.FilePatternReader

getModuloT() - Method in class loci.formats.ReaderWrapper

getModuloZ() - Method in class loci.formats.FormatReader

getModuloZ() - Method in interface loci.formats.IFormatReader

getModuloZ() - Method in class loci.formats.ImageReader

getModuloZ() - Method in class loci.formats.in.FilePatternReader

getModuloZ() - Method in class loci.formats.ReaderWrapper

getMontage(int) - Method in class loci.formats.in.FluoviewReader

getMontageColumn(int, int) - Method in class loci.formats.in.SlideBook6Reader

getMontageRow(int, int) - Method in class loci.formats.in.SlideBook6Reader

getMsgLogger() - Static method in class jj2000.j2k.util.FacilityManager

Returns the MsgLogger registered with the current thread (the thread that calls this method).

getMsgLogger(Thread) - Static method in class jj2000.j2k.util.FacilityManager

Returns the MsgLogger registered with the thread 't' (the thread that calls this method).

getNA(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getName() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the name of the tag, as it will appear in image metadata.

getName(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the XML tag name defined in JP2 XML xsd/dtd for the box with the provided type.

getName() - Method in class loci.common.Location

Returns the name of this file, i.e.

getName() - Method in enum loci.formats.codec.JPEG2000BoxType

Returns the name of the box type.

getName() - Method in enum loci.formats.codec.JPEG2000SegmentMarker

Returns the name of the segment marker.

getName(int) - Method in class loci.formats.gui.TwoChannelColorSpace

getName() - Method in enum loci.formats.in.BaseZeissReader.Charset

getName() - Method in class loci.formats.in.IM3Reader.Spectrum

getName(String) - Method in class loci.formats.services.NetCDFServiceImpl

getName() - Method in enum loci.formats.tiff.PhotoInterp

Retrieves the given name of the photometric interpretation.

getName() - Method in class loci.poi.ddf.EscherBSERecord

The length in characters of the blip name.

getName() - Method in class loci.poi.ddf.EscherProperty

getName() - Method in class loci.poi.hpsf.CustomProperty

Gets the property's name.

GetName() - Method in class loci.poi.hssf.model.FormulaParser

Get an Identifier

getName() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getName() - Method in class loci.poi.hssf.record.StyleRecord

get the style's name

getName() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

getName() - Method in interface loci.poi.poifs.filesystem.Entry

get the name of the Entry

getName() - Method in class loci.poi.poifs.filesystem.EntryNode

get the name of the Entry

getName() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getName() - Method in class loci.poi.poifs.property.Property

Get the name of this property

getName() - Method in interface mdbtools.dbengine.Table

getName() - Method in class mdbtools.dbengine.Tests.SimpleDataSourceTable

getName() - Method in class ome.metakit.Column

Retrieve the name of the column.

getName() - Method in class ome.units.UNITS

getName() - Method in class ome.xml.model.Channel

getName() - Method in class ome.xml.model.Dataset

getName() - Method in class ome.xml.model.ExperimenterGroup

getName() - Method in class ome.xml.model.Image

getName() - Method in class ome.xml.model.MapPair

getName() - Method in class ome.xml.model.Plate

getName() - Method in class ome.xml.model.PlateAcquisition

getName() - Method in class ome.xml.model.Project

getName() - Method in class ome.xml.model.Reagent

getName() - Method in class ome.xml.model.ROI

getName() - Method in class ome.xml.model.Screen

getName() - Method in class ome.xml.model.StageLabel

GetNameAsIs() - Method in class loci.poi.hssf.model.FormulaParser

Get an Identifier AS IS, without stripping white spaces or converting to uppercase; used for literals

getNameAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the Named range

getNameDefinition() - Method in class loci.poi.hssf.record.NameRecord

gets the definition, reference (Formula)

getNameDefinitionSize() - Method in class loci.poi.hssf.record.NameRecord

getNameIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the named range index by his name Note:Excel named ranges are case-insensitive and this method performs a case-insensitive search.

getNameLength() - Method in class loci.poi.hssf.record.StyleRecord

if this is a user defined record get the length of the style name

getNameName() - Method in class loci.poi.hssf.usermodel.HSSFName

gets the name of the named range

getNameName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the named range name

getNamepos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the namepos.

getNameRecord(int) - Method in class loci.poi.hssf.model.Workbook

gets the name record

getNamespace() - Method in class ome.xml.model.Annotation

getNamespace() - Method in class ome.xml.model.ROI

getNameText() - Method in class loci.poi.hssf.record.NameRecord

gets the name

getNameTextLength() - Method in class loci.poi.hssf.record.NameRecord

gets the name length

getNamingConvention(String) - Method in class loci.formats.FormatReader

Retrieves an NamingConvention enumeration value for the given String.

getNANData() - Method in class loci.poi.hssf.record.RecordInputStream

getNativeDataType() - Method in class loci.formats.ChannelFiller

getNativeDataType() - Method in class loci.formats.ChannelMerger

getNativeDataType() - Method in class loci.formats.ChannelSeparator

getNativeDataType() - Method in class loci.formats.FormatHandler

getNativeDataType() - Method in interface loci.formats.IFormatHandler

Returns the native data type of image planes for this reader, as returned by IFormatReader.openPlane(int, int, int, int, int) or IFormatWriter.savePlane(int, java.lang.Object).

getNativeDataType() - Method in class loci.formats.ImageReader

getNativeDataType() - Method in class loci.formats.ImageWriter

getNativeDataType() - Method in class loci.formats.in.BIFormatReader

getNativeDataType() - Method in class loci.formats.in.FilePatternReader

getNativeDataType() - Method in class loci.formats.in.TextReader

getNativeDataType() - Method in class loci.formats.MinMaxCalculator

getNativeDataType() - Method in class loci.formats.out.ImageIOWriter

getNativeDataType() - Method in class loci.formats.out.LegacyQTWriter

getNativeDataType() - Method in class loci.formats.ReaderWrapper

getNativeDataType() - Method in class loci.formats.TileStitcher

getNativeDataType() - Method in class loci.formats.WriterWrapper

getNativeDataType() - Method in class loci.plugins.util.ImageProcessorReader

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates an IIOMetadataNode from this box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Creates an IIOMetadataNode from this channel definition box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates an IIOMetadataNode from this color specification box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Creates an IIOMetadataNode from this component mapping box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Creates an IIOMetadataNode from this data entry URL box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Creates an IIOMetadataNode from this file type box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Creates an IIOMetadataNode from this image header box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

creates an IIOMetadataNode from this palette box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Creates an IIOMetadataNode from this resolution box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

Creates an IIOMetadataNode from this signature box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Creates an IIOMetadataNode from this UUID box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

Creates an IIOMetadataNode from this UUID list box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

Creates an IIOMetadataNode from this XML box.

getNativeNodeForSimpleBox() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates an IIOMetadataNode from this box.

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getNChannels() - Method in class loci.plugins.util.RecordedImageProcessor

getNDFilter() - Method in class ome.xml.model.Channel

getNewCOC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COC

getNewCOD() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COD

getNewCOM() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COM

getNewCRG() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of CRG

getNewFileName() - Method in class loci.tests.testng.TimestampedLogFileAppender

getNewPOC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of POC

getNewQCC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of QCC

getNewQCD() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of QCD

getNewRGN() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of RGN

getNewSIZ() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of SIZ

getNewSOT() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of SOT

getNextBlockIndex(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableReader

return the next block index

getNextChangingElement(int, boolean, int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

getNextChild() - Method in interface loci.poi.poifs.property.Child

Get the next Child, if any

getNextChild() - Method in class loci.poi.poifs.property.Property

Get the next Child, if any

getNextChildIndex() - Method in class loci.poi.poifs.property.Property

get the next sibling

getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

getNextCodeBlock(int, CBlkRateDistStats) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the next coded code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkRateDistStats) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the next coded code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function gets a datablk from the entropy coder.

getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next code-block in the current tile for the specified component, as a copy (see below).

getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc

Returns the next code-block in the current tile for the specified component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the next code-block in the current tile for the specified component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function gets a datablk from the entropy coder.

getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the next code-block in the current tile for the specified component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next code-block in the current tile for the specified component.

getNextLine(List<String>) - Method in class loci.formats.in.TextReader

getNextOffset(long) - Method in class loci.formats.tiff.TiffParser

Read a file offset.

getNextResLevel() - Method in class jj2000.j2k.wavelet.Subband

Returns the first leaf subband element in the next higher resolution level.

getNextRow() - Method in class loci.poi.hssf.model.Sheet

get the NEXT RowRecord (from LOC).

getNextSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getNextSubband(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next subband that will be used to get the next code-block to return by the getNext[Intern]CodeBlock method.

getNextTag(RandomAccessInputStream) - Method in class loci.formats.in.DicomReader

getNextTag(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader

getNextValueRecord() - Method in class loci.poi.hssf.model.Sheet

get the NEXT value record (from LOC).

getNoColor() - Method in class loci.poi.hssf.record.PrintSetupRecord

getNoColor() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the black and white setting.

getNodeFromTree(IIOMetadataNode, String, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getNodeName(TIFFField) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getNodes(Element, String) - Method in class loci.formats.in.LIFReader

getNominalMagnification() - Method in class ome.xml.model.Objective

getNomRangeBits(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of bits corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component and in the current tile.

getNomRangeBits(int) - Method in interface jj2000.j2k.image.ImgData

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the image data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the image data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns the number of bits corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the number of bits, referred to as the "range bits", corresponding to the nominal range of the data in the specified component.

getNomTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the nominal tile height

getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the nominal width of the tiles in the reference grid.

getNomTileHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.Tiler

Returns the nominal width of the tiles in the reference grid.

getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the nominal height of tiles

getNomTileHeight() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the nominal tiles height

getNomTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the nominal tile width

getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the nominal width of the tiles in the reference grid.

getNomTileWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.Tiler

Returns the nominal width of the tiles in the reference grid.

getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the nominal width of tiles

getNomTileWidth() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the nominal tiles width

getNonThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser

Returns non-thumbnail IFDs.

getNoOrientation() - Method in class loci.poi.hssf.record.PrintSetupRecord

getNoOrientation() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the no orientation.

getNOptPoints() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the number of layers to optimize, or optimization points, as specified by this object.

getNormalZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the zoom magnification in normal view

getNoROIDescaling() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Gets noROIDescaling

getNoteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the note count or 0 if the DocumentSummaryInformation does not contain a note count.

getNoteRecord() - Method in class loci.poi.hssf.model.CommentShape

Return the NoteRecord holding the comment attributes

getNotes() - Method in class loci.poi.hssf.record.PrintSetupRecord

getNotes() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the print notes.

getNoWlzMsg() - Method in interface loci.formats.services.WlzService

Gets the text string for when Woolz has not been found.

getNoWlzMsg() - Method in class loci.formats.services.WlzServiceImpl

GetNum() - Method in class loci.poi.hssf.model.FormulaParser

Get a Number

getNum() - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor

Returns numerator

getNumAreas() - Method in class loci.poi.hssf.record.MergeCellsRecord

get the number of merged areas.

getNumAxis() - Method in class loci.poi.hssf.record.AxisUsedRecord

Get the num axis field for the AxisUsed record.

getNumBands() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the integer used to represent the tag.

getNumber(String) - Method in class loci.formats.NumberFilter

Gets numbers filling the asterisk positions.

getNumber(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

Gets the number attribute of the LittleEndian class

getNumberOfBands() - Method in enum ome.jxr.image.FrequencyBand

getNumberOfBuiltinBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the number of builtin and reserved builtinFormats

getNumberOfChannels() - Method in class ome.jxr.ifd.IFDMetadata

getNumberOfChannels() - Method in enum ome.jxr.ifd.PixelFormat

getNumberOfElementsInArray() - Method in class loci.poi.ddf.EscherArrayProperty

getNumberOfElementsInMemory() - Method in class loci.poi.ddf.EscherArrayProperty

getNumberOfEntries() - Method in class ome.jxr.ifd.IFDContainer

Returns the number of entries in this IFD Container.

getNumberOfExpressionTokens() - Method in class loci.poi.hssf.record.FormulaRecord

get the size of the stack

getNumberOfFontRecords() - Method in class loci.poi.hssf.model.Workbook

gets the number of font records

getNumberOfFonts() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of fonts in the font table

getNumberOfInfoRecsForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord

getNumberOfNames() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the total number of named ranges in the workboko

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AddPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AttrPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ConcatPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.DividePtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.EqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the number of operands for the Less than operator

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the number of operands for the Less than operator

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.OperationPtg

The number of operands expected by the operations

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PercentPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PowerPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.RangePtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.SubtractPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnionPtg

getNumberOfSheets() - Method in class loci.poi.hssf.record.SupBookRecord

getNumberOfSheets() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of spreadsheets in the workbook (this will be three after serialization)

getNumberPtgFromString(String, String, String) - Method in class loci.poi.hssf.model.FormulaParser

Get a PTG for an integer from its string representation.

getNumberValue() - Method in class ome.xml.model.primitives.NonNegativeFloat

getNumberValue() - Method in class ome.xml.model.primitives.NonNegativeInteger

getNumberValue() - Method in class ome.xml.model.primitives.NonNegativeLong

getNumberValue() - Method in class ome.xml.model.primitives.PercentFraction

getNumberValue() - Method in class ome.xml.model.primitives.PositiveFloat

getNumberValue() - Method in class ome.xml.model.primitives.PositiveInteger

getNumberValue() - Method in class ome.xml.model.primitives.PositiveLong

getNumberValue() - Method in interface ome.xml.model.primitives.PrimitiveNumber

getNumBits(int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter

The number of bits represented by the value which should be a legal length for a color table.

getNumBits(int) - Static method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter

getNumBreaks() - Method in class loci.poi.hssf.record.PageBreakRecord

getNumBubbleValues() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num bubble values field for the Series record.

getNumBytes(int) - Method in class loci.formats.in.GatanReader

getNumCaptures() - Method in class loci.formats.in.SlideBook6Reader

getNumCategories() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num categories field for the Series record.

getNumCellOffsets() - Method in class loci.poi.hssf.record.DBCellRecord

get the number of cell offsets in the celloffset array

getNumCellStyles() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of styles the workbook contains

getNumChannels(int) - Method in class loci.formats.in.SlideBook6Reader

getNumChildren() - Method in class loci.poi.hssf.model.Node

getNumCodedBytes() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Returns the number of bytes that are necessary from the compressed output stream to decode all the symbols that have been coded this far.

getNumColumnBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns the number of column page breaks

getNumColumns() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getNumColumns() - Method in class loci.poi.hssf.record.MulBlankRecord

get the number of columns this contains (last-first +1)

getNumColumns() - Method in class loci.poi.hssf.record.MulRKRecord

get the number of columns this contains (last-first +1)

getNumCOM() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns the number of found COM marker segments

getNumComp() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the number of color components.

getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the number of image components.

getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets the number of components

getNumComponents() - Method in class loci.formats.gui.TwoChannelColorSpace

getNumComps() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the number of components in the image.

getNumComps() - Method in interface jj2000.j2k.image.ImgData

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.input.ImgReader

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the number of components in the image.

getNumComps() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the number of components in the image.

getNumCtxts() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Returns the number of contexts in the arithmetic coder.

getNumCtxts() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Returns the number of contexts in the arithmetic coder.

getNumDbcells() - Method in class loci.poi.hssf.record.IndexRecord

getNumDecompositionLevels() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets numDecompositionLevels.

getNumEntries() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the number of palette entries.

getNumEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.BooleanIM3Record

Get the # of boolean values in this record

getNumEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.FloatIM3Record

Get the # of floating-point values in this record

getNumEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.IntIM3Record

Get the # of integer values in this record

getNumerator() - Method in class loci.formats.tiff.TiffRational

Gets this number's numerator.

getNumerator() - Method in class loci.poi.hssf.record.SCLRecord

Get the numerator field for the SCL record.

getNumerator() - Method in class ome.jxr.ifd.JXRRational

getNumericalAperture() - Method in class loci.formats.in.ND2Handler

getNumericCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a number.

getNumericFields(GenericDialog) - Method in class loci.plugins.in.ColorDialog

getNumericFields(GenericDialog) - Static method in class loci.plugins.util.WindowTools

getNumExFormats() - Method in class loci.poi.hssf.model.Workbook

get the number of ExtendedFormat records contained in this workbook.

getNumFoundMarkSeg() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the number of found marker segments in the current header.

getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC

getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD

getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the number of guard bits used by this quantizer in the given tile-component.

getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the number of guard bits used by this quantizer in the given tile-component.

getNumIdClusters() - Method in class loci.poi.ddf.EscherDggRecord

Number of id clusters + 1

getNumImages() - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the number of images in the ImageInputStream.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

Overrides the method defined in the superclass.

getNumInfoRecords() - Method in class loci.poi.hssf.record.ExtSSTRecord

getNumLayers() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Returns the number of layers that are actually generated.

getNumMergedRegions() - Method in class loci.poi.hssf.model.Sheet

getNumMergedRegions() - Method in class loci.poi.hssf.usermodel.HSSFSheet

returns the number of merged regions

getNumNames() - Method in class loci.poi.hssf.model.Workbook

gets the total number of names

getNumOfREFRecords() - Method in class loci.poi.hssf.record.ExternSheetRecord

returns the number of REF Records, which is in model

getNumOfREFStructures() - Method in class loci.poi.hssf.record.ExternSheetRecord

return the number of the REF structors , that is in Excel file

getNumPositions(int) - Method in class loci.formats.in.SlideBook6Reader

getNumPrecinct(int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Gets the number of precincts in a given component and resolution level.

getNumRecords() - Method in class loci.poi.hssf.model.Sheet

Returns the number of low level binary records in this sheet.

getNumRecords() - Method in class loci.poi.hssf.model.Workbook

getNumRefs() - Method in class loci.poi.hssf.record.SelectionRecord

get the number of cell refs (we don't support selection so set to 0

getNumRowBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns the number of row page breaks

getNumSelectedTabs() - Method in class loci.poi.hssf.record.WindowOneRecord

get the number of selected tabs

getNumSeries() - Method in class loci.formats.in.LegacyND2Reader

getNumShapeIdsUsed() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster

getNumShapes() - Method in class loci.poi.ddf.EscherDgRecord

The number of shapes in this drawing group.

getNumShapesSaved() - Method in class loci.poi.ddf.EscherDggRecord

getNumSheets() - Method in class loci.poi.hssf.model.Workbook

returns the number of boundsheet objects contained in this workbook.

getNumStrings() - Method in class loci.poi.hssf.record.SSTRecord

getNumStringsPerBucket() - Method in class loci.poi.hssf.record.ExtSSTRecord

getNumThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getNumTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the number of TIFFFields in this directory.

getNumTileParts(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Returns the number of tile-part found for a given tile

getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets the number of tiles

getNumTiles(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the total number of tiles in the image.

getNumTiles() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getNumTiles(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the total number of tiles in the image.

getNumTiles() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the number of tiles in the image

getNumTiles(Point) - Method in interface jj2000.j2k.image.ImgData

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in interface jj2000.j2k.image.ImgData

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.input.ImgReader

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.input.ImgReader

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.Tiler

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.Tiler

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the total number of tiles in the image.

getNumTimepoints(int) - Method in class loci.formats.in.SlideBook6Reader

getNumUniqueStrings() - Method in class loci.poi.hssf.record.SSTRecord

getNumValues() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num values field for the Series record.

getNumXColumns(int) - Method in class loci.formats.in.SlideBook6Reader

getNumXTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the number of tiles along the tile grid in the horizontal direction.

getNumXTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNumXTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getNumYRows(int) - Method in class loci.formats.in.SlideBook6Reader

getNumYTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the number of tiles along the tile grid in the vertical direction.

getNumYTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

getNumYTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getNumZPlanes(int) - Method in class loci.formats.in.SlideBook6Reader

getObject(int) - Method in class loci.formats.cache.ByteArraySource

getObject(int[]) - Method in class loci.formats.cache.Cache

Gets the cached object at the given dimensional position.

getObject(int) - Method in class loci.formats.cache.CacheSource

getObject(int) - Method in interface loci.formats.cache.ICacheSource

Get the object corresponding to the given index.

getObject(int) - Method in class loci.formats.gui.BufferedImageSource

getObject(int) - Method in class loci.plugins.util.ImageProcessorSource

getObjectArrayMaxLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectArrayMinLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectClass(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectCount() - Method in class loci.formats.cache.CacheSource

getObjectCount() - Method in interface loci.formats.cache.ICacheSource

Get the total number of objects that this source can retrieve.

getObjectCount() - Method in class loci.formats.gui.BufferedImageSource

getObjectCount() - Method in class loci.plugins.util.ImageProcessorSource

getObjectDefaultValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectEnumerations(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectId() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the object id field for the CommonObjectData record.

getObjective(int) - Method in class ome.xml.model.Instrument

getObjective() - Method in class ome.xml.model.ObjectiveSettings

getObjectiveAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Objective.

getObjectiveAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Objective.

getObjectiveAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveCalibratedMagnification(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveCalibratedMagnification(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveCalibratedMagnification(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CalibratedMagnification property of Objective.

getObjectiveCalibratedMagnification(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveCorrection(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveCorrection(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveCorrection(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Correction property of Objective.

getObjectiveCorrection(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveCount(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveCount(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Objective elements.

getObjectiveCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveID(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Objective.

getObjectiveID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveImmersion(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveImmersion(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveImmersion(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Immersion property of Objective.

getObjectiveImmersion(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveIris(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveIris(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveIris(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Iris property of Objective.

getObjectiveIris(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveLens() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the objective lens string for this Frame.

getObjectiveLensNA() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the numerical aperture of the lens for this Frame.

getObjectiveLensNA(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveLensNA(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveLensNA(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LensNA property of Objective.

getObjectiveLensNA(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LotNumber property of Objective.

getObjectiveLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveManufacturer() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the objective manufacturer from the objective lens string.

getObjectiveManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Manufacturer property of Objective.

getObjectiveManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveModel() - Method in class loci.formats.in.ND2Handler

getObjectiveModel(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveModel(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Model property of Objective.

getObjectiveModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader

getObjectiveNominalMagnification(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveNominalMagnification(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveNominalMagnification(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the NominalMagnification property of Objective.

getObjectiveNominalMagnification(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SerialNumber property of Objective.

getObjectiveSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSettings() - Method in class ome.xml.model.Image

getObjectiveSettingsCorrectionCollar(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSettingsCorrectionCollar(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSettingsCorrectionCollar(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the CorrectionCollar property of ObjectiveSettings.

getObjectiveSettingsCorrectionCollar(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSettingsID(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSettingsID(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSettingsID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of ObjectiveSettings.

getObjectiveSettingsID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSettingsMedium(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSettingsMedium(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSettingsMedium(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Medium property of ObjectiveSettings.

getObjectiveSettingsMedium(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveSettingsRefractiveIndex(int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveSettingsRefractiveIndex(int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveSettingsRefractiveIndex(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RefractiveIndex property of ObjectiveSettings.

getObjectiveSettingsRefractiveIndex(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectiveWorkingDistance(int, int) - Method in class ome.xml.meta.AggregateMetadata

getObjectiveWorkingDistance(int, int) - Method in class ome.xml.meta.DummyMetadata

getObjectiveWorkingDistance(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the WorkingDistance property of Objective.

getObjectiveWorkingDistance(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getObjectMaxValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectMinValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjectProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether object protection is enabled or disabled

getObjectType() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the object type field for the CommonObjectData record.

getObjectValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getObjectValueType(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getObjRecord() - Method in class loci.poi.hssf.model.AbstractShape

getObjRecord() - Method in class loci.poi.hssf.model.LineShape

getObjRecord() - Method in class loci.poi.hssf.model.PictureShape

getObjRecord() - Method in class loci.poi.hssf.model.PolygonShape

getObjRecord() - Method in class loci.poi.hssf.model.SimpleFilledShape

getObjRecord() - Method in class loci.poi.hssf.model.TextboxShape

getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Gives the offset of the end of last packet containing ROI information

getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Gives the offset of the end of last packet containing ROI information

getOffset(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the cth offset for this Frame.

getOffset() - Method in class loci.poi.ddf.EscherBSERecord

File offset in the delay stream.

getOffset() - Method in class loci.poi.hpsf.Section

Returns the offset of the section in the stream.

getOffset() - Method in class loci.poi.poifs.storage.RawDataBlock

getOffset() - Method in class ome.units.unit.Unit

getOffset() - Method in class ome.xml.model.Detector

getOffset() - Method in class ome.xml.model.DetectorSettings

getOffsetOfContainer() - Method in class ome.jxr.ifd.IFDContainer

Returns the offset from the start of a data stream to the address where this IFD Container begins.

getOffsetOfFirstEntry() - Method in class ome.jxr.ifd.IFDContainer

Returns the offset from the start of a data stream to the address where this IFD Container begins, skipping IFD.ENTRIES_COUNT_SIZE bytes that hold the Entry count for this container.

getOMEMetadata(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Returns a OMEXMLMetadata object with the same contents as the given MetadataRetrieve, converting it if necessary.

getOMEMetadata(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl

getOMEMetadata() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getOMEXML(String) - Method in class loci.formats.out.OMETiffWriter

getOMEXML(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Extracts an OME-XML metadata string from the given metadata object, by converting to an OME-XML metadata object if necessary.

getOMEXML(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl

getOMEXML() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getOmeXmlMetadata() - Method in class loci.formats.in.FakeReader

getOmeXmlService() - Method in class loci.formats.in.FakeReader

getOMEXMLVersion(Object) - Method in interface loci.formats.services.OMEXMLService

Gets the schema version for the given OME-XML metadata or root object (e.g., "2007-06" or "2003-FC").

getOMEXMLVersion(Object) - Method in class loci.formats.services.OMEXMLServiceImpl

getOnDemandStripOffsets() - Method in class loci.formats.tiff.IFD

getOpenAllSeriesInfo() - Method in class loci.plugins.in.ImporterOptions

getOperator() - Method in class mdbtools.dbengine.sql.Condition

getOperator() - Method in class mdbtools.dbengine.sql.Equation

getOpticalZoom() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the optical zoom associated with this Frame.

getOptimalTileHeight() - Method in class loci.formats.DelegateReader

getOptimalTileHeight() - Method in class loci.formats.FormatReader

getOptimalTileHeight() - Method in interface loci.formats.IFormatReader

Returns the optimal sub-image height for use with openBytes.

getOptimalTileHeight() - Method in class loci.formats.ImageReader

getOptimalTileHeight() - Method in class loci.formats.in.AFIReader

getOptimalTileHeight() - Method in class loci.formats.in.AmiraReader

getOptimalTileHeight() - Method in class loci.formats.in.APLReader

getOptimalTileHeight() - Method in class loci.formats.in.BaseZeissReader

getOptimalTileHeight() - Method in class loci.formats.in.BDReader

getOptimalTileHeight() - Method in class loci.formats.in.BioRadReader

getOptimalTileHeight() - Method in class loci.formats.in.CellH5Reader

getOptimalTileHeight() - Method in class loci.formats.in.CellSensReader

getOptimalTileHeight() - Method in class loci.formats.in.EPSReader

getOptimalTileHeight() - Method in class loci.formats.in.FilePatternReader

getOptimalTileHeight() - Method in class loci.formats.in.FlexReader

getOptimalTileHeight() - Method in class loci.formats.in.FV1000Reader

getOptimalTileHeight() - Method in class loci.formats.in.HamamatsuVMSReader

getOptimalTileHeight() - Method in class loci.formats.in.ImageIOReader

getOptimalTileHeight() - Method in class loci.formats.in.ImarisHDFReader

getOptimalTileHeight() - Method in class loci.formats.in.InCellReader

getOptimalTileHeight() - Method in class loci.formats.in.IPWReader

getOptimalTileHeight() - Method in class loci.formats.in.L2DReader

getOptimalTileHeight() - Method in class loci.formats.in.LeicaReader

getOptimalTileHeight() - Method in class loci.formats.in.LeicaSCNReader

getOptimalTileHeight() - Method in class loci.formats.in.LIFReader

getOptimalTileHeight() - Method in class loci.formats.in.MIASReader

getOptimalTileHeight() - Method in class loci.formats.in.MicromanagerReader

getOptimalTileHeight() - Method in class loci.formats.in.MinimalTiffReader

getOptimalTileHeight() - Method in class loci.formats.in.ND2Reader

getOptimalTileHeight() - Method in class loci.formats.in.NDPIReader

getOptimalTileHeight() - Method in class loci.formats.in.NDPISReader

getOptimalTileHeight() - Method in class loci.formats.in.NRRDReader

getOptimalTileHeight() - Method in class loci.formats.in.OMETiffReader

getOptimalTileHeight() - Method in class loci.formats.in.OpenlabReader

getOptimalTileHeight() - Method in class loci.formats.in.PCIReader

getOptimalTileHeight() - Method in class loci.formats.in.PerkinElmerReader

getOptimalTileHeight() - Method in class loci.formats.in.PrairieReader

getOptimalTileHeight() - Method in class loci.formats.in.PyramidTiffReader

getOptimalTileHeight() - Method in class loci.formats.in.ScanrReader

getOptimalTileHeight() - Method in class loci.formats.in.SVSReader

getOptimalTileHeight() - Method in class loci.formats.in.TrestleReader

getOptimalTileHeight() - Method in class loci.formats.in.VisitechReader

getOptimalTileHeight() - Method in class loci.formats.in.ZeissLSMReader

getOptimalTileHeight() - Method in class loci.formats.ReaderWrapper

getOptimalTileWidth() - Method in class loci.formats.DelegateReader

getOptimalTileWidth() - Method in class loci.formats.FormatReader

getOptimalTileWidth() - Method in interface loci.formats.IFormatReader

Returns the optimal sub-image width for use with openBytes.

getOptimalTileWidth() - Method in class loci.formats.ImageReader

getOptimalTileWidth() - Method in class loci.formats.in.AFIReader

getOptimalTileWidth() - Method in class loci.formats.in.APLReader

getOptimalTileWidth() - Method in class loci.formats.in.BDReader

getOptimalTileWidth() - Method in class loci.formats.in.CellSensReader

getOptimalTileWidth() - Method in class loci.formats.in.EPSReader

getOptimalTileWidth() - Method in class loci.formats.in.FilePatternReader

getOptimalTileWidth() - Method in class loci.formats.in.FlexReader

getOptimalTileWidth() - Method in class loci.formats.in.FV1000Reader

getOptimalTileWidth() - Method in class loci.formats.in.HamamatsuVMSReader

getOptimalTileWidth() - Method in class loci.formats.in.ImarisHDFReader

getOptimalTileWidth() - Method in class loci.formats.in.InCellReader

getOptimalTileWidth() - Method in class loci.formats.in.IPWReader

getOptimalTileWidth() - Method in class loci.formats.in.L2DReader

getOptimalTileWidth() - Method in class loci.formats.in.LeicaReader

getOptimalTileWidth() - Method in class loci.formats.in.LeicaSCNReader

getOptimalTileWidth() - Method in class loci.formats.in.MIASReader

getOptimalTileWidth() - Method in class loci.formats.in.MicromanagerReader

getOptimalTileWidth() - Method in class loci.formats.in.MinimalTiffReader

getOptimalTileWidth() - Method in class loci.formats.in.NDPIReader

getOptimalTileWidth() - Method in class loci.formats.in.NDPISReader

getOptimalTileWidth() - Method in class loci.formats.in.OMETiffReader

getOptimalTileWidth() - Method in class loci.formats.in.PCIReader

getOptimalTileWidth() - Method in class loci.formats.in.PerkinElmerReader

getOptimalTileWidth() - Method in class loci.formats.in.PrairieReader

getOptimalTileWidth() - Method in class loci.formats.in.PyramidTiffReader

getOptimalTileWidth() - Method in class loci.formats.in.ScanrReader

getOptimalTileWidth() - Method in class loci.formats.in.SVSReader

getOptimalTileWidth() - Method in class loci.formats.in.TrestleReader

getOptimalTileWidth() - Method in class loci.formats.ReaderWrapper

getOptimalWidth() - Method in class loci.formats.in.ZeissLSMReader

getOptimize() - Method in class loci.poi.hssf.record.RowRecord

get whether to optimize or not (set to 0)

getOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the option with the given key.

getOption() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the option field for the CommonObjectData record.

getOptionFlag() - Method in class loci.poi.hssf.record.NameRecord

gets the option flag

getOptionFlags() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the option flags (unimportant for HSSF supported sheets)

getOptionFlags() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

get the (currently unimportant to HSSF) option flags

getOptionFlags() - Method in class loci.poi.hssf.record.RowRecord

gets the option bitmask.

getOptionFlags() - Method in class loci.poi.hssf.record.UnicodeString

get the option flags which among other things return if this is a 16-bit or 8 bit string

getOptions() - Method in class loci.plugins.in.ImportProcess

getOptions() - Method in class loci.poi.ddf.EscherOptRecord

Automatically recalculate the correct option

getOptions() - Method in class loci.poi.ddf.EscherRecord.EscherRecordHeader

getOptions() - Method in class loci.poi.ddf.EscherRecord

getOptions() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the options field for the AxisOptions record.

getOptions() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the options field for the CategorySeriesAxis record.

getOptions() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the options bitfield - use the bitsetters instead

getOptions() - Method in class loci.poi.hssf.record.DatRecord

Get the options field for the Dat record.

getOptions() - Method in class loci.poi.hssf.record.formula.AttrPtg

getOptions() - Method in class loci.poi.hssf.record.FormulaRecord

get the option flags

getOptions() - Method in class loci.poi.hssf.record.FrameRecord

Get the options field for the Frame record.

getOptions() - Method in class loci.poi.hssf.record.LegendRecord

Get the options field for the Legend record.

getOptions() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the options field for the LinkedData record.

getOptions() - Method in class loci.poi.hssf.record.PrintSetupRecord

getOptions() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the options field for the TextObjectBase record.

getOptions() - Method in class loci.poi.hssf.record.TickRecord

Get the options field for the Tick record.

getOptions() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the options field for the ValueRange record.

getOptions() - Method in class loci.poi.hssf.record.WindowOneRecord

get the options bitmask (see bit setters)

getOptions() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the options bitmask or just use the bit setters.

getOptions() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the bit flags for the options.

getOptions1() - Method in class loci.poi.hssf.record.TextRecord

Get the options1 field for the Text record.

getOptions2() - Method in class loci.poi.hssf.record.TextRecord

Get the options2 field for the Text record.

getOrder() - Method in class loci.common.ByteArrayHandle

getOrder() - Method in class loci.common.FileHandle

getOrder() - Method in interface loci.common.IRandomAccess

Returns the current order of the stream.

getOrder() - Method in class loci.common.NIOFileHandle

getOrder() - Method in class loci.common.StreamHandle

getOrder() - Method in class loci.formats.cache.CacheStrategy

getOrder() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the order in which objects should be loaded along each axis.

getOrderBy(int) - Method in class mdbtools.dbengine.sql.Select

getOrderByCount() - Method in class mdbtools.dbengine.sql.Select

getOrgX() - Method in interface loci.formats.services.WlzService

Gets column origin.

getOrgX() - Method in class loci.formats.services.WlzServiceImpl

getOrgY() - Method in interface loci.formats.services.WlzService

Gets line origin.

getOrgY() - Method in class loci.formats.services.WlzServiceImpl

getOrgZ() - Method in interface loci.formats.services.WlzService

Gets plane origin.

getOrgZ() - Method in class loci.formats.services.WlzServiceImpl

getOrigBitDepth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

getOriginalBitDepth(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the original bitdepth of the specified component.

getOriginalIndex(int) - Method in class loci.formats.ChannelMerger

Returns the image number in the original dataset that corresponds to the given image number.

getOriginalIndex(int) - Method in class loci.formats.ChannelSeparator

Returns the image number in the original dataset that corresponds to the given image number.

getOriginalMetadata(OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService

Parse any OriginalMetadata annotations from the given OME-XML metadata object and store them in a Hashtable.

getOriginalMetadata(OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl

getOriginalMetadata() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.METADATA.

getOriginalOrder() - Method in class loci.formats.AxisGuesser

Gets the original dimension order.

getOriginalOrder() - Method in class loci.formats.FileStitcher.ExternalSeries

getOSVersion() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "OS version" field.

getOSVersion() - Method in class loci.poi.hpsf.SpecialPropertySet

getOutlineLevel() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the outline level for the cells

getOutlineLevel() - Method in class loci.poi.hssf.record.RowRecord

get the outline level of this row

getOutlineStyleLevel() - Method in class loci.poi.hssf.record.StyleRecord

get the row or column level of the style (if builtin 1||2)

getPackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

For the case of binary data (isBinary() returns true), return the binary data as a packed byte array.

getPackedPktHead(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the packed packet headers for a given tile.

getPacketPerTilePart() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packetPerTilePart

getPackPacketHeaderInMain() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packPacketHeaderInMain

getPackPacketHeaderInTile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packPacketHeaderInTile

getPageBreakZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord

zoom magification in page break view

getPageCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the page count or 0 if the SummaryInformation does not contain a page count.

getPaged() - Method in class loci.poi.hssf.record.WindowTwoRecord

is the sheet currently displayed in the window

getPageName() - Method in class ome.jxr.ifd.IFDMetadata

getPageNumber() - Method in class ome.jxr.ifd.IFDMetadata

getPageStart() - Method in class loci.poi.hssf.record.PrintSetupRecord

getPageStart() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the page start.

getPaint() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getPaint() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getPairs() - Method in class ome.xml.model.MapPairs

getPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette options bitmask (see the individual bit getter methods that reference this one)

getPalettepos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getPane() - Method in class loci.poi.hssf.record.SelectionRecord

get which window pane this is for

getPaneInformation() - Method in class loci.poi.hssf.model.Sheet

Returns the information regarding the currently configured pane (split or freeze).

getPaneInformation() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the information regarding the currently configured pane (split or freeze).

getPaperSize() - Method in class loci.poi.hssf.record.PrintSetupRecord

getPaperSize() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the paper size.

getParameterClass(int) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the parameters that are used in this class.

getParameterInfo() - Static method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.roi.ROIDeScaler

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the parameters that are used in this class and implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT

Returns the parameters that are used in this class and implementing classes.

getParCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the par count or 0 if the DocumentSummaryInformation does not contain a par count.

getParent(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat

getParent(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat

getParent() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the parent of this subband.

getParent() - Method in class jj2000.j2k.wavelet.Subband

Returns the parent of this subband.

getParent() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the parent of this subband.

getParent() - Method in class loci.common.Location

Returns the name of this file's parent directory, i.e.

getParent(int) - Method in class loci.formats.in.LeicaSCNReader

getParent() - Method in class loci.poi.hssf.usermodel.HSSFShape

Gets the parent shape.

getParent() - Method in interface loci.poi.poifs.filesystem.Entry

get this Entry's parent (the DirectoryEntry that owns this Entry).

getParent() - Method in class loci.poi.poifs.filesystem.EntryNode

get this Entry's parent (the DocumentEntry that owns this Entry).

getParent() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

Returns the path's parent or null if this path is the root path.

getParent(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

get a node's parent.

getParent(int) - Method in class loci.poi.util.BinaryTree.Node

get the parent node

getParentFile() - Method in class loci.common.Location

getParentIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

for cell XF types this is the parent style (usually 0/normal).

getParentParser() - Method in class ome.jxr.parser.Parser

getParentTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the parent TIFFTag of this directory if one has been defined or null otherwise.

getParsedExpression() - Method in class loci.poi.hssf.record.FormulaRecord

get the stack as a list

getParsedExpressionTokens(RecordInputStream) - Method in class loci.poi.hssf.record.SharedFormulaRecord

getParsingEnabled() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Gets parsingEnabled

getPassword() - Method in class loci.poi.hssf.model.Sheet

Returns the PasswordRecord.

getPassword() - Method in class loci.poi.hssf.record.FileSharingRecord

getPassword() - Method in class loci.poi.hssf.record.PasswordRecord

get the password

getPassword() - Method in class loci.poi.hssf.record.PasswordRev4Record

get the password

getPassword() - Method in class loci.poi.hssf.usermodel.HSSFSheet

getPath() - Method in class loci.common.Location

getPath(PrairieMetadata.PFile) - Method in class loci.formats.in.PrairieReader

Gets the absolute path to the filename of the given PrairieMetadata.PFile.

getPath() - Method in class loci.plugins.util.BFVirtualStack

getPath() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

getPath() - Method in class loci.poi.poifs.filesystem.DirectoryNode

getPath() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getPatriarch() - Method in class loci.poi.hssf.record.EscherAggregate

getPattern() - Method in class loci.formats.FilePattern

Gets the file pattern string.

getPattern() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the pattern field for the AreaFormat record.

getPhotometricInterpretation() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the current value that will be written to the Photometricinterpretation tag.

getPhotometricInterpretation() - Method in class loci.formats.tiff.IFD

Retrieves the image's photometric interpretation (TIFF tag PhotometricInterpretation) from this IFD.

getPhysicalNumberOfCells() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getPhysicalNumberOfCells() - Method in class loci.poi.hssf.usermodel.HSSFRow

gets the number of defined cells (NOT number of cells in the actual row!).

getPhysicalNumberOfRows() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getPhysicalNumberOfRows() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the number of phsyically defined rows (NOT the number of rows in the sheet)

getPhysicalSize(Double, String) - Static method in class loci.formats.FormatTools

getPhysicalSizes() - Method in class loci.formats.in.SVSReader

getPhysicalSizeX(Double) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in X into a length in microns

getPhysicalSizeX(Double, String) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in X into a length of the given unit.

getPhysicalSizeX(Double, Unit<Length>) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in X into a length of the given unit.

getPhysicalSizeX() - Method in class loci.tests.testng.Configuration

getPhysicalSizeX() - Method in class ome.xml.model.Pixels

getPhysicalSizeXUnitXsdDefault() - Static method in class ome.xml.model.Pixels

getPhysicalSizeY(Double) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Y into a length in microns

getPhysicalSizeY(Double, String) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Y into a length of the given unit.

getPhysicalSizeY(Double, Unit<Length>) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Y into a length of the given unit.

getPhysicalSizeY() - Method in class loci.tests.testng.Configuration

getPhysicalSizeY() - Method in class ome.xml.model.Pixels

getPhysicalSizeYUnitXsdDefault() - Static method in class ome.xml.model.Pixels

getPhysicalSizeZ(Double) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Z into a length in microns

getPhysicalSizeZ(Double, String) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Z into a length of the given unit.

getPhysicalSizeZ(Double, Unit<Length>) - Static method in class loci.formats.FormatTools

Formats the input value for the physical size in Z into a length of the given unit.

getPhysicalSizeZ() - Method in class loci.tests.testng.Configuration

getPhysicalSizeZ() - Method in class ome.xml.model.Pixels

getPhysicalSizeZUnitXsdDefault() - Static method in class ome.xml.model.Pixels

getPictDimensions(byte[]) - Method in class loci.formats.gui.LegacyQTTools

Gets width and height for the given PICT bytes.

getPicturedata() - Method in class loci.poi.ddf.EscherBlipRecord

getPictureIndex() - Method in class loci.poi.hssf.usermodel.HSSFPicture

getPIDString(long) - Method in class loci.poi.hpsf.Section

Returns the PID string associated with a property ID.

getPIDString(byte[], long) - Static method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the property ID string that is associated with a given property ID in a section format ID's namespace.

getPinholeSize() - Method in class loci.formats.in.ND2Handler

getPinholeSize() - Method in class ome.xml.model.Channel

getPinholeSizeUnitXsdDefault() - Static method in class ome.xml.model.Channel

getPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

getPixel(int, int, int[]) - Method in class loci.plugins.util.RecordedImageProcessor

getPixelBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(WritableRaster, boolean) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(WritableRaster, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelCount() - Method in class loci.plugins.util.RecordedImageProcessor

getPixelInterpolated(double, double) - Method in class loci.plugins.util.RecordedImageProcessor

getPixels(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Gets the image's pixel data as arrays of primitives, one per channel.

getPixels(BufferedImage, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets the image's pixel data as arrays of primitives, one per channel.

getPixels(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Gets the raster's pixel data as arrays of primitives, one per channel.

getPixels(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets the raster's pixel data as arrays of primitives, one per channel.

getPixels() - Method in class loci.plugins.util.RecordedImageProcessor

getPixels() - Method in class ome.xml.model.BinData

getPixels() - Method in class ome.xml.model.Channel

getPixels() - Method in class ome.xml.model.Image

getPixels() - Method in class ome.xml.model.Plane

getPixels() - Method in class ome.xml.model.TiffData

getPixelsBigEndian(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsBigEndian(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsBigEndian(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the BigEndian property of Pixels.

getPixelsBigEndian(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsBinDataBigEndian(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsBinDataBigEndian(int, int) - Method in class ome.xml.meta.DummyMetadata

getPixelsBinDataBigEndian(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the BigEndian property of Pixels.

getPixelsBinDataBigEndian(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsBinDataCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsBinDataCount(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsBinDataCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of BinData elements in Pixels.

getPixelsBinDataCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsCopy() - Method in class loci.plugins.util.RecordedImageProcessor

getPixelsDimensionOrder(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsDimensionOrder(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsDimensionOrder(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DimensionOrder property of Pixels.

getPixelsDimensionOrder(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsID(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsID(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Pixels.

getPixelsID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsInterleaved(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsInterleaved(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsInterleaved(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Interleaved property of Pixels.

getPixelsInterleaved(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelSize(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns the pixel size (in bytes) of the given pixel format.

getPixelSizeX() - Method in class loci.formats.in.MetamorphHandler

getPixelSizeX() - Method in class loci.formats.in.ND2Handler

getPixelSizeY() - Method in class loci.formats.in.MetamorphHandler

getPixelSizeY() - Method in class loci.formats.in.ND2Handler

getPixelSizeZ() - Method in class loci.formats.in.ND2Handler

getPixelsPerLine() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the pixels per line for this Frame.

getPixelsPhysicalSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsPhysicalSizeX(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsPhysicalSizeX(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsPhysicalSizeX(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PhysicalSizeX property of Pixels.

getPixelsPhysicalSizeX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsPhysicalSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsPhysicalSizeY(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsPhysicalSizeY(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsPhysicalSizeY(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PhysicalSizeY property of Pixels.

getPixelsPhysicalSizeY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsPhysicalSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsPhysicalSizeZ(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsPhysicalSizeZ(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsPhysicalSizeZ(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PhysicalSizeZ property of Pixels.

getPixelsPhysicalSizeZ(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSignificantBits(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSignificantBits(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSignificantBits(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SignificantBits property of Pixels.

getPixelsSignificantBits(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeC(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeC(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeC(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeC property of Pixels.

getPixelsSizeC(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeT(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeT(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeT(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeT property of Pixels.

getPixelsSizeT(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeX(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeX(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeX(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeX property of Pixels.

getPixelsSizeX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeY(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeY(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeY(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeY property of Pixels.

getPixelsSizeY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsSizeZ(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsSizeZ(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsSizeZ(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the SizeZ property of Pixels.

getPixelsSizeZ(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelsTimeIncrement(Double[]) - Method in class loci.plugins.macro.LociFunctions

getPixelsTimeIncrement(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsTimeIncrement(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsTimeIncrement(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TimeIncrement property of Pixels.

getPixelsTimeIncrement(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelString(int) - Method in class loci.formats.in.DeltavisionReader

Get a descriptive string representing the pixel type.

getPixelsType(int) - Method in class ome.xml.meta.AggregateMetadata

getPixelsType(int) - Method in class ome.xml.meta.DummyMetadata

getPixelsType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Pixels.

getPixelsType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPixelType() - Method in class loci.formats.FileStitcher

getPixelType() - Method in class loci.formats.FormatReader

getPixelType(String) - Method in class loci.formats.FormatReader

Retrieves an PixelType enumeration value for the given String.

getPixelType(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Gets the pixel type of the given image.

getPixelType() - Method in interface loci.formats.IFormatReader

Gets the pixel type.

getPixelType() - Method in class loci.formats.ImageReader

getPixelType(int) - Method in class loci.formats.in.DeltavisionReader

Get the OME pixel type from the pixel type stored in the file.

getPixelType() - Method in class loci.formats.in.FilePatternReader

getPixelType(int) - Method in class loci.formats.in.OBFReader

getPixelType() - Method in class loci.formats.ReaderWrapper

getPixelType() - Method in interface loci.formats.services.WlzService

Gets the image pixel type.

getPixelType() - Method in class loci.formats.services.WlzServiceImpl

getPixelType() - Method in class loci.formats.tiff.IFD

Retrieves the image's pixel type based on the BitsPerSample tag.

getPixelType(String[]) - Method in class loci.plugins.macro.LociFunctions

getPixelType() - Method in class loci.tests.testng.Configuration

getPixelType() - Method in enum ome.jxr.ifd.PixelFormat

getPixelTypeFromString(String) - Method in class loci.formats.in.LiFlimReader

getPixelTypes() - Method in class loci.formats.FormatWriter

getPixelTypes(String) - Method in class loci.formats.FormatWriter

getPixelTypes() - Method in interface loci.formats.IFormatWriter

Gets the supported pixel types.

getPixelTypes(String) - Method in interface loci.formats.IFormatWriter

Gets the supported pixel types for the given codec.

getPixelTypes() - Method in class loci.formats.ImageWriter

getPixelTypes(String) - Method in class loci.formats.ImageWriter

getPixelTypes(String) - Method in class loci.formats.out.APNGWriter

getPixelTypes(String) - Method in class loci.formats.out.AVIWriter

getPixelTypes(String) - Method in class loci.formats.out.CellH5Writer

getPixelTypes(String) - Method in class loci.formats.out.EPSWriter

getPixelTypes(String) - Method in class loci.formats.out.ICSWriter

getPixelTypes(String) - Method in class loci.formats.out.ImageIOWriter

getPixelTypes(String) - Method in class loci.formats.out.JavaWriter

getPixelTypes(String) - Method in class loci.formats.out.JPEG2000Writer

Overridden to return the formats supported by the writer.

getPixelTypes(String) - Method in class loci.formats.out.JPEGWriter

getPixelTypes(String) - Method in class loci.formats.out.OMEXMLWriter

getPixelTypes(String) - Method in class loci.formats.out.QTWriter

getPixelTypes(String) - Method in class loci.formats.out.TiffWriter

getPixelTypes(String) - Method in class loci.formats.out.V3DrawWriter

getPixelTypes(String) - Method in class loci.formats.out.WlzWriter

getPixelTypes() - Method in class loci.formats.WriterWrapper

getPixelTypes(String) - Method in class loci.formats.WriterWrapper

getPixelTypeString(int) - Static method in class loci.formats.FormatTools

Takes a pixel type value and gets a corresponding string representation.

getPixelValue(int, int) - Method in class loci.plugins.util.RecordedImageProcessor

getPlanarConfiguration() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getPlanarConfiguration() - Method in class loci.formats.tiff.IFD

Retrieves the image's planar configuration (TIFF tag PlanarConfiguration) from this IFD.

getPlane(int, int) - Method in class loci.formats.in.FV1000Reader

getPlane(int[]) - Method in class loci.formats.in.OpenlabReader

getPlane(int, int, int) - Method in class loci.tests.testng.ConversionTest

getPlane(int) - Method in class ome.xml.model.Pixels

getPlaneAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Plane.

getPlaneAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Plane.

getPlaneAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneByteOffset(int, int, int) - Method in class loci.formats.in.DeltavisionReader

Given any specific Z, W, and T of a plane, determine the absolute byte offset of the plane in the file.

getPlaneCount() - Method in class loci.formats.FormatWriter

Retrieve the total number of planes in the current series.

getPlaneCount(int) - Method in class loci.formats.FormatWriter

Retrieve the total number of planes in given series.

getPlaneCount() - Method in class loci.formats.out.CellH5Writer

getPlaneCount() - Method in class loci.formats.out.TiffWriter

getPlaneCount(int) - Method in class loci.formats.out.TiffWriter

getPlaneCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneCount(int) - Method in class ome.xml.meta.DummyMetadata

getPlaneCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Plane elements.

getPlaneCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneCount() - Method in class ome.xml.model.TiffData

getPlaneDeltaT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneDeltaT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneDeltaT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DeltaT property of Plane.

getPlaneDeltaT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneExposureTime(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneExposureTime(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneExposureTime(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExposureTime property of Plane.

getPlaneExposureTime(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneHashSHA1(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneHashSHA1(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneHashSHA1(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the HashSHA1 property of Plane.

getPlaneHashSHA1(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneIndex(IFormatReader, int) - Static method in class loci.plugins.macro.LociFunctions

Finds the Plane index corresponding to the given image plane number.

getPlaneMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the maximum pixel value for the specified plane.

getPlaneMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the minimum pixel value for the specified plane.

getPlanePositionX(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlanePositionX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlanePositionX(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlanePositionX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PositionX property of Plane.

getPlanePositionX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlanePositionY(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlanePositionY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlanePositionY(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlanePositionY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PositionY property of Plane.

getPlanePositionY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlanePositionZ(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlanePositionZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlanePositionZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlanePositionZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PositionZ property of Plane.

getPlanePositionZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlanes() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlaneSize(IFormatReader) - Static method in class loci.formats.FormatTools

Returns the size in bytes of a single plane.

getPlaneSize(IFormatReader, int, int) - Static method in class loci.formats.FormatTools

Returns the size in bytes of a w * h tile.

getPlanesToLoad(int) - Method in class loci.plugins.in.ImagePlusReader

getPlaneTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Plane.

getPlaneTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Plane.

getPlaneTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlaneTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlaneTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Plane.

getPlaneTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlaneTimingDeltaT(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlaneTimingExposureTime(Double[], Double) - Method in class loci.plugins.macro.LociFunctions

getPlate(int) - Method in class ome.xml.model.OME

getPlate() - Method in class ome.xml.model.PlateAcquisition

getPlate() - Method in class ome.xml.model.Well

getPlateAcquisition(int) - Method in class ome.xml.model.Plate

getPlateAcquisitionAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of PlateAcquisition.

getPlateAcquisitionAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in PlateAcquisition.

getPlateAcquisitionAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionCount(int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of PlateAcquisition elements.

getPlateAcquisitionCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionDescription(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of PlateAcquisition.

getPlateAcquisitionDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionEndTime(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionEndTime(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionEndTime(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the EndTime property of PlateAcquisition.

getPlateAcquisitionEndTime(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionID(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of PlateAcquisition.

getPlateAcquisitionID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionMaximumFieldCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionMaximumFieldCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionMaximumFieldCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MaximumFieldCount property of PlateAcquisition.

getPlateAcquisitionMaximumFieldCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionName(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionName(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of PlateAcquisition.

getPlateAcquisitionName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionStartTime(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionStartTime(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionStartTime(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StartTime property of PlateAcquisition.

getPlateAcquisitionStartTime(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAcquisitionWellSampleRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAcquisitionWellSampleRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAcquisitionWellSampleRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the WellSampleRef property of PlateAcquisition.

getPlateAcquisitionWellSampleRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getPlateAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Plate.

getPlateAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getPlateAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Plate.

getPlateAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateColumnNamingConvention(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateColumnNamingConvention(int) - Method in class ome.xml.meta.DummyMetadata

getPlateColumnNamingConvention(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ColumnNamingConvention property of Plate.

getPlateColumnNamingConvention(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateColumns() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateColumns(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateColumns(int) - Method in class ome.xml.meta.DummyMetadata

getPlateColumns(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Columns property of Plate.

getPlateColumns(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateCount() - Method in class ome.xml.meta.AggregateMetadata

getPlateCount() - Method in class ome.xml.meta.DummyMetadata

getPlateCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Plate elements.

getPlateCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateDescription() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateDescription(int) - Method in class ome.xml.meta.DummyMetadata

getPlateDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Plate.

getPlateDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateExternalIdentifier(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateExternalIdentifier(int) - Method in class ome.xml.meta.DummyMetadata

getPlateExternalIdentifier(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExternalIdentifier property of Plate.

getPlateExternalIdentifier(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateFieldIndex(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateFieldIndex(int) - Method in class ome.xml.meta.DummyMetadata

getPlateFieldIndex(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FieldIndex property of Plate.

getPlateFieldIndex(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateID(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateID(int) - Method in class ome.xml.meta.DummyMetadata

getPlateID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Plate.

getPlateID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateIdentifier() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateName(String) - Method in class loci.formats.in.CellomicsReader

getPlateName() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateName(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateName(int) - Method in class ome.xml.meta.DummyMetadata

getPlateName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Plate.

getPlateName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getPlateRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of PlateRef elements.

getPlateRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateRowNamingConvention(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateRowNamingConvention(int) - Method in class ome.xml.meta.DummyMetadata

getPlateRowNamingConvention(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the RowNamingConvention property of Plate.

getPlateRowNamingConvention(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateRows() - Method in class loci.formats.in.OperettaReader.OperettaHandler

getPlateRows(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateRows(int) - Method in class ome.xml.meta.DummyMetadata

getPlateRows(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Rows property of Plate.

getPlateRows(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateStatus(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateStatus(int) - Method in class ome.xml.meta.DummyMetadata

getPlateStatus(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Status property of Plate.

getPlateStatus(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateWellOriginX(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateWellOriginX(int) - Method in class ome.xml.meta.DummyMetadata

getPlateWellOriginX(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the WellOriginX property of Plate.

getPlateWellOriginX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPlateWellOriginY(int) - Method in class ome.xml.meta.AggregateMetadata

getPlateWellOriginY(int) - Method in class ome.xml.meta.DummyMetadata

getPlateWellOriginY(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the WellOriginY property of Plate.

getPlateWellOriginY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPockelCell() - Method in class ome.xml.model.Laser

getPockelCellSetting() - Method in class ome.xml.model.Channel

getPointAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPointAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Point.

getPointAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Point.

getPointFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Point.

getPointFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Point.

getPointFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Point.

getPointFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Point.

getPointFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointID(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Point.

getPointID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Point.

getPointLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Point.

getPointLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointNumber() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the point number field for the DataFormat record.

getPoints() - Method in enum loci.formats.in.BaseZeissReader.FeatureType

getPoints() - Method in class ome.xml.model.Polygon

getPoints() - Method in class ome.xml.model.Polyline

getPointStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Point.

getPointStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Point.

getPointStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Point.

getPointStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointText(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Point.

getPointText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Point.

getPointTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Point.

getPointTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Point.

getPointTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Point.

getPointTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Point.

getPointVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointX(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Point.

getPointX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPointY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPointY(int, int) - Method in class ome.xml.meta.DummyMetadata

getPointY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Point.

getPointY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Polygon.

getPolygonAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Polygon.

getPolygonFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Polygon.

getPolygonFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Polygon.

getPolygonFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Polygon.

getPolygonFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Polygon.

getPolygonFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonID(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Polygon.

getPolygonID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Polygon.

getPolygonLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Polygon.

getPolygonLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonPoints(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonPoints(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonPoints(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Points property of Polygon.

getPolygonPoints(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Polygon.

getPolygonStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Polygon.

getPolygonStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Polygon.

getPolygonStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonText(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Polygon.

getPolygonText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Polygon.

getPolygonTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Polygon.

getPolygonTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Polygon.

getPolygonTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Polygon.

getPolygonTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolygonVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolygonVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolygonVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Polygon.

getPolygonVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Polyline.

getPolylineAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Polyline.

getPolylineFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Polyline.

getPolylineFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Polyline.

getPolylineFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Polyline.

getPolylineFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Polyline.

getPolylineFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineID(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Polyline.

getPolylineID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Polyline.

getPolylineLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Polyline.

getPolylineLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineMarkerEnd(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineMarkerEnd(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineMarkerEnd(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MarkerEnd property of Polyline.

getPolylineMarkerEnd(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineMarkerStart(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineMarkerStart(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineMarkerStart(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the MarkerStart property of Polyline.

getPolylineMarkerStart(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylinePoints(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylinePoints(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylinePoints(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Points property of Polyline.

getPolylinePoints(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Polyline.

getPolylineStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Polyline.

getPolylineStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Polyline.

getPolylineStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineText(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Polyline.

getPolylineText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Polyline.

getPolylineTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Polyline.

getPolylineTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Polyline.

getPolylineTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Polyline.

getPolylineTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPolylineVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getPolylineVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getPolylineVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Polyline.

getPolylineVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getPos() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Returns the stream position clamped to a maximum of Integer.MAX_VALUE.

getPos() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the current offset in the file

getPos() - Method in interface jj2000.j2k.io.RandomAccessIO

Returns the current position in the stream, which is the position from where the next byte of data would be read.

getPos() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the current position in the stream, which is the position from where the next byte of data would be read.

getPos(int) - Method in class loci.formats.in.FluoviewReader

getPos() - Method in class loci.poi.hssf.record.RecordInputStream

getPosition(int) - Method in class loci.formats.in.ZeissLSMReader

getPositionFromFile(String) - Method in class loci.formats.in.MIASReader

Returns an array of length 5 that contains the well, time point, Z and channel indices corresponding to the given analysis file.

getPositionNames() - Method in class loci.formats.in.ND2Handler

getPositionOfBof() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the offset in bytes of the Beginning of File Marker within the HSSF Stream part of the POIFS file

getPositionX() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the X stage position associated with this Frame.

getPositionX(int) - Method in class loci.tests.testng.Configuration

getPositionX() - Method in class ome.xml.model.Plane

getPositionX() - Method in class ome.xml.model.WellSample

getPositionXUnitXsdDefault() - Static method in class ome.xml.model.Plane

getPositionXUnitXsdDefault() - Static method in class ome.xml.model.WellSample

getPositionY() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the Y stage position associated with this Frame.

getPositionY(int) - Method in class loci.tests.testng.Configuration

getPositionY() - Method in class ome.xml.model.Plane

getPositionY() - Method in class ome.xml.model.WellSample

getPositionYUnitXsdDefault() - Static method in class ome.xml.model.Plane

getPositionYUnitXsdDefault() - Static method in class ome.xml.model.WellSample

getPositionZ() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the Z stage position associated with this Frame.

getPositionZ(int) - Method in class loci.tests.testng.Configuration

getPositionZ() - Method in class ome.xml.model.Plane

getPositionZUnitXsdDefault() - Static method in class ome.xml.model.Plane

getPossible(String) - Method in class loci.plugins.prefs.OptionsList

Gets the possible values for the string option with the given key.

getPossible() - Method in class loci.plugins.prefs.StringOption

Gets the list of possible values.

getPossibleDomains(String) - Method in class loci.formats.FormatReader

getPossibleDomains(String) - Method in interface loci.formats.IFormatReader

Returns a list of scientific domains in which this format is used.

getPossibleDomains(String) - Method in class loci.formats.ImageReader

getPossibleDomains(String) - Method in class loci.formats.in.FilePatternReader

getPossibleDomains(String) - Method in class loci.formats.ReaderWrapper

getPossiblePositions() - Method in class loci.formats.cache.CacheStrategy

Gets positions to consider for possible inclusion in the cache, assuming a current position at the origin (0).

getPossiblePositions() - Method in class loci.formats.cache.CrosshairStrategy

getPossiblePositions() - Method in class loci.formats.cache.RectangleStrategy

getPower() - Method in class ome.xml.model.LightSource

getPowers() - Method in class loci.formats.in.ND2Handler

getPowerUnitXsdDefault() - Static method in class ome.xml.model.LightSource

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the precinct partition width for the specified tile-component and (tile-component) resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the precinct partition width for the specified tile-component and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Returns the precinct partition width for the specified component, resolution level and tile.

getPPX(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the width of a packet for the specified tile- component and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the precinct partition width for the specified component, tile and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec

Returns the precinct partition width in component 'n' and tile 't' at resolution level 'rl'.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the precinct partition height for the specified tile-component and (tile-component) resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the precinct partition height for the specified component, tile and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Returns the precinct partition height for the specified component, resolution level and tile.

getPPY(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the height of a packet for the specified tile- component and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the precinct partition height for the specified component, tile and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec

Returns the precinct partition height in component 'n' and tile 't' at resolution level 'rl'.

getPrecedence() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns Precedence.

getPrecinctPartition() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets precinctPartition

getPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Get PrecInfo instance of the specified resolution level, component and precinct.

getPrecInfo(int, int, int, int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns information about a given precinct

getPref(String, Class<? extends IFormatReader>, boolean) - Static method in class loci.plugins.util.LociPrefs

getPreferredCompressionType(ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getPreferredCompressionType(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter

getPreferredEncoding() - Static method in class loci.poi.util.StringUtil

getPreferredSize() - Method in class loci.formats.gui.CacheIndicator

getPreferredSize() - Method in class loci.formats.gui.PreviewPane

getPreferredSize() - Method in class loci.poi.hssf.usermodel.HSSFPicture

Calculate the preferred size for this picture.

getPreferredSize() - Method in class loci.tests.ImageTester

getPrefferedSpatialTransformation() - Method in class ome.jxr.ifd.IFDMetadata

getPrefix() - Method in class loci.formats.FilePattern

Gets the pattern's text string before any numerical ranges.

getPrefix(int) - Method in class loci.formats.FilePattern

Gets the pattern's text string before the given numerical block.

getPrefix(String) - Method in class loci.formats.in.ZeissTIFFReader

getPrefixes() - Method in class loci.formats.FilePattern

Gets the pattern's text string before each numerical block.

getPreOffset() - Method in class loci.poi.hssf.model.Sheet

get the preoffset when using DBCELL records (currently unused) - this is the position of this sheet within the whole file.

getPresentationFormat() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the presentation format (or null).

getPreviousChild() - Method in interface loci.poi.poifs.property.Child

Get the previous Child, if any

getPreviousChild() - Method in class loci.poi.poifs.property.Property

Get the previous Child, if any

getPreviousChildIndex() - Method in class loci.poi.poifs.property.Property

get the previous sibling

getPreviousSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode

getPrintArea(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Retrieves the reference for the printarea of the specified sheet, the sheet name is appended to the reference even if it was not specified.

getPrintGridlines() - Method in class loci.poi.hssf.model.Sheet

Returns the PrintGridlinesRecord.

getPrintGridlines() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

get whether or not to print the gridlines (and make your spreadsheet ugly)

getPrintHeaders() - Method in class loci.poi.hssf.record.PrintHeadersRecord

get whether to print the headers - y/n

getPrintSetup() - Method in class loci.poi.hssf.model.Sheet

Returns the PrintSetupRecord.

getPrintSetup() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the print setup object.

getPriorities() - Method in class loci.formats.cache.CacheStrategy

getPriorities() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the priority for caching each axis.

getProcessor(int) - Method in class loci.plugins.util.BFVirtualStack

getProgressionName() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets progressionType

getProgressionType() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets progressionType.

getProgressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets progressionType

getProgressMaximum() - Method in class loci.common.StatusEvent

Gets progress maximum.

getProgressValue() - Method in class loci.common.StatusEvent

Gets progress value.

getProgressWatch() - Static method in class jj2000.j2k.util.FacilityManager

Returns the ProgressWatch instance registered with the current thread (the thread that calls this method).

getProject(int) - Method in class ome.xml.model.OME

getProjectAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getProjectAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getProjectAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Project.

getProjectAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getProjectAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Project.

getProjectAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectCount() - Method in class ome.xml.meta.AggregateMetadata

getProjectCount() - Method in class ome.xml.meta.DummyMetadata

getProjectCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Project elements.

getProjectCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectDatasetRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getProjectDatasetRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getProjectDatasetRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the DatasetRef property of Project.

getProjectDatasetRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectDescription(int) - Method in class ome.xml.meta.DummyMetadata

getProjectDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Project.

getProjectDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectExperimenterGroupRef(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectExperimenterGroupRef(int) - Method in class ome.xml.meta.DummyMetadata

getProjectExperimenterGroupRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterGroupRef property of Project.

getProjectExperimenterGroupRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata

getProjectExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ExperimenterRef property of Project.

getProjectExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectID(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectID(int) - Method in class ome.xml.meta.DummyMetadata

getProjectID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Project.

getProjectID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProjectName(int) - Method in class ome.xml.meta.AggregateMetadata

getProjectName(int) - Method in class ome.xml.meta.DummyMetadata

getProjectName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Project.

getProjectName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getProperties() - Method in class loci.poi.hpsf.MutableSection

Gets this section's properties.

getProperties() - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the Property array contained in this property set.

getProperties() - Method in class loci.poi.hpsf.Section

Returns this section's properties.

getProperties() - Method in class loci.poi.hpsf.SpecialPropertySet

getPropertiesSize() - Method in class loci.poi.ddf.EscherOptRecord

getProperty(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Gets a property from the property set of this image.

getProperty(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getProperty(long) - Method in class loci.poi.hpsf.MutableSection

Gets a property.

getProperty(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of the property with the specified ID.

getProperty(long) - Method in class loci.poi.hpsf.Section

Returns the value of the property with the specified ID.

getProperty(int) - Method in class loci.poi.hpsf.SpecialPropertySet

getProperty() - Method in class loci.poi.poifs.filesystem.EntryNode

grant access to the property

getProperty(String) - Method in class loci.tests.testng.FormatReaderTestFactory

Safely return a system property by key excluding default Ant values

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of a boolean property with the specified ID.

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.Section

Returns the value of the boolean property with the specified ID.

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet

getPropertyCount() - Method in class loci.poi.hpsf.MutableSection

Overwrites the super class' method to cope with a redundancy: the property count is maintained in a separate member variable, but shouldn't.

getPropertyCount() - Method in class loci.poi.hpsf.Section

Returns the number of properties in this section.

getPropertyIntValue(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of the numeric property with the specified ID.

getPropertyIntValue(long) - Method in class loci.poi.hpsf.Section

Returns the value of the numeric property with the specified ID.

getPropertyIntValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet

getPropertyName(short) - Static method in class loci.poi.ddf.EscherProperties

getPropertyNames() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns a list of the properties recognized by this image.

getPropertyNames(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns an array of Strings recognized as names by this property source that begin with the supplied prefix.

getPropertyNames() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getPropertyNumber() - Method in class loci.poi.ddf.EscherProperty

getPropertySet(String) - Method in class loci.poi.POIDocument

For a given named property entry, either return it or null if if it wasn't found

getPropertySize() - Method in class loci.poi.ddf.EscherComplexProperty

Caclulates the number of bytes required to serialize this property.

getPropertySize() - Method in class loci.poi.ddf.EscherProperty

Most properties are just 6 bytes in length.

getPropertyStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader

get start of Property Table

getPropertyType(short) - Static method in class loci.poi.ddf.EscherProperties

getPropertyValue() - Method in class loci.poi.ddf.EscherSimpleProperty

getProtect() - Method in class loci.poi.hssf.model.Sheet

Returns the ProtectRecord.

getProtect() - Method in class loci.poi.hssf.record.ObjectProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.ProtectionRev4Record

get whether the this is protected shared/tracked workbook or not

getProtect() - Method in class loci.poi.hssf.record.ProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.WindowProtectRecord

is this window protected or not

getProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether protection is enabled or disabled

getProtocolDescription() - Method in class ome.xml.model.Screen

getProtocolIdentifier() - Method in class ome.xml.model.Screen

getProtpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getPtgClass() - Method in class loci.poi.hssf.record.formula.Ptg

returns the class (REF/VALUE/ARRAY) for this Ptg

getPtgSize(int) - Method in class loci.poi.hssf.model.FormulaParser

Adds the size of all the ptgs after the provided index (inclusive).

getPtgSize(int, int) - Method in class loci.poi.hssf.model.FormulaParser

getPulse(String) - Method in class loci.formats.FormatReader

Retrieves an Pulse enumeration value for the given String.

getPulse() - Method in class ome.xml.model.Laser

getQTVersion() - Method in class loci.formats.gui.LegacyQTTools

Gets the QuickTime for Java version number.

getQuantity(T, UnitsElectricPotential) - Static method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getQuantity(T, UnitsElectricPotential) - Static method in class ome.xml.model.enums.handlers.UnitsElectricPotentialEnumHandler

getQuantity(T, UnitsFrequency) - Static method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getQuantity(T, UnitsFrequency) - Static method in class ome.xml.model.enums.handlers.UnitsFrequencyEnumHandler

getQuantity(T, UnitsLength) - Static method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getQuantity(T, UnitsLength) - Static method in class ome.xml.model.enums.handlers.UnitsLengthEnumHandler

getQuantity(T, UnitsPower) - Static method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getQuantity(T, UnitsPower) - Static method in class ome.xml.model.enums.handlers.UnitsPowerEnumHandler

getQuantity(T, UnitsPressure) - Static method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getQuantity(T, UnitsPressure) - Static method in class ome.xml.model.enums.handlers.UnitsPressureEnumHandler

getQuantity(T, UnitsTemperature) - Static method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getQuantity(T, UnitsTemperature) - Static method in class ome.xml.model.enums.handlers.UnitsTemperatureEnumHandler

getQuantity(T, UnitsTime) - Static method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getQuantity(T, UnitsTime) - Static method in class ome.xml.model.enums.handlers.UnitsTimeEnumHandler

getQuantizationStep() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets quantizationStep

getQuantizationType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets quantizationType

getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC

getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD

getQuantTypeSpec() - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the quantization type spec object associated to the quantizer.

getQuietInfo() - Method in class loci.plugins.in.ImporterOptions

getRadiusX() - Method in class ome.xml.model.Ellipse

getRadiusY() - Method in class ome.xml.model.Ellipse

getRandomAccessFile() - Method in class loci.common.FileHandle

Gets the random access file object backing this FileHandle.

getRandomAccessFile() - Method in class loci.common.NIOFileHandle

Gets the random access file object backing this FileHandle.

getRange() - Method in class loci.formats.cache.CacheStrategy

getRange() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the number of objects to cache along each axis.

getRange() - Method in class loci.poi.hssf.util.RangeAddress

getRasterLength(int[]) - Static method in class loci.formats.FormatTools

Computes the number of raster values for a positional array with the given lengths.

getRaw() - Method in class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam

Returns the value of the raw parameter.

getRawData() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getRawDataSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord

getRawImageType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Returns an ImageTypeSpecifier describing an image whose underlying data array has the same format as the raw source pixel data.

getRawImageTypeSpecifier(int, int, int, int[], int[], int[], char[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

A utility method that returns an ImageTypeSpecifier suitable for decoding an image with the given parameters.

getRawSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the length of the raw sheetname in characters the length depends on the unicode flag

getRawValue(int) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, unshifted

getReader(int) - Method in class loci.formats.FileStitcher.ExternalSeries

getReader() - Method in class loci.formats.FileStitcher

Gets the wrapped reader prototype.

getReader(int) - Method in class loci.formats.FileStitcher

Gets the reader appropriate for use with the given image plane.

getReader(int, int) - Method in class loci.formats.FileStitcher

Gets the reader that should be used with the given series and image plane.

getReader(IFormatReader, Class<? extends IFormatReader>) - Static method in class loci.formats.FormatTools

Recursively look for the first underlying reader that is an instance of the given class.

getReader() - Method in class loci.formats.gui.FormatFileFilter

Returns the filter's reader.

getReader(String) - Method in class loci.formats.ImageReader

Gets the reader used to open the given file.

getReader() - Method in class loci.formats.ImageReader

Gets the reader used to open the current file.

getReader(Class<? extends IFormatReader>) - Method in class loci.formats.ImageReader

Gets the file format reader instance matching the given class.

getReader(String, boolean) - Method in class loci.formats.in.CellWorxReader

getReader() - Method in class loci.formats.ReaderWrapper

Gets the wrapped reader.

getReader() - Method in class loci.formats.services.JAIIIOServiceImpl

Set up the JPEG-2000 image reader.

getReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getReader() - Method in class loci.plugins.util.BFVirtualStack

getReader() - Method in class loci.tests.testng.Configuration

getReaders() - Method in class loci.formats.FileStitcher.ExternalSeries

getReaders() - Method in class loci.formats.ImageReader

Gets all constituent file format readers.

getReadingOrder() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the reading order for far east versions (0 - Context, 1 - Left to right, 2 - right to left) - We could use some help with support for the far east.

getReadOnly() - Method in class loci.poi.hssf.record.FileSharingRecord

get the readonly

getReadOutRate() - Method in class loci.formats.in.MetamorphHandler

getReadOutRate() - Method in class ome.xml.model.DetectorSettings

getReadOutRateUnitXsdDefault() - Static method in class ome.xml.model.DetectorSettings

getReagent(int) - Method in class ome.xml.model.Screen

getReagentAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Reagent.

getReagentAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Reagent.

getReagentAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentCount(int) - Method in class ome.xml.meta.AggregateMetadata

getReagentCount(int) - Method in class ome.xml.meta.DummyMetadata

getReagentCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Reagent elements.

getReagentCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentDescription(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Reagent.

getReagentDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentID(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Reagent.

getReagentID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentIdentifier() - Method in class ome.xml.model.Reagent

getReagentName(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentName(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Reagent.

getReagentName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentReagentIdentifier(int, int) - Method in class ome.xml.meta.AggregateMetadata

getReagentReagentIdentifier(int, int) - Method in class ome.xml.meta.DummyMetadata

getReagentReagentIdentifier(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ReagentIdentifier property of Reagent.

getReagentReagentIdentifier(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getReagentSetDescription() - Method in class ome.xml.model.Screen

getReagentSetIdentifier() - Method in class ome.xml.model.Screen

getRealSTKFile(Location) - Method in class loci.formats.in.MetamorphReader

Check that the given STK file exists.

getReason() - Method in exception loci.poi.hpsf.HPSFException

Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.

getReason() - Method in exception loci.poi.hpsf.HPSFRuntimeException

Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.

getReason() - Method in exception loci.poi.hssf.eventusermodel.HSSFUserException

Returns the Throwable that caused this exception to be thrown or null if there was no such Throwable.

getRecalc() - Method in class loci.poi.hssf.record.SaveRecalcRecord

get whether to recalculate formulas/etc before saving or not

getRecalcIdArray() - Method in class loci.poi.hssf.record.RecalcIdRecord

get the recalc array.

getRecord() - Method in class loci.poi.hssf.dev.BiffViewer.RecordDetails

getRecordedProcessor() - Method in class loci.plugins.util.BFVirtualStack

getRecordId() - Method in class loci.poi.ddf.EscherChildAnchorRecord

The record id for the EscherChildAnchorRecord.

getRecordId() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The record id for this record.

getRecordId() - Method in class loci.poi.ddf.EscherClientDataRecord

Returns the identifier of this record.

getRecordId() - Method in class loci.poi.ddf.EscherDggRecord

getRecordId() - Method in class loci.poi.ddf.EscherDgRecord

getRecordId() - Method in class loci.poi.ddf.EscherRecord.EscherRecordHeader

getRecordId() - Method in class loci.poi.ddf.EscherRecord

Return the current record id.

getRecordId() - Method in class loci.poi.ddf.EscherSpgrRecord

The 16 bit identifier of this shape group record.

getRecordId() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

getRecordId() - Method in class loci.poi.ddf.EscherSpRecord

getRecordName() - Method in class loci.poi.ddf.EscherBlipRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherBlipWMFRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherBSERecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherChildAnchorRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherClientDataRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherContainerRecord

getRecordName() - Method in class loci.poi.ddf.EscherDggRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherDgRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherOptRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherRecord

Subclasses should return the short name for this escher record.

getRecordName() - Method in class loci.poi.ddf.EscherSpgrRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherSpRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherTextboxRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.UnknownEscherRecord

The short name for this record

getRecordName() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getRecordName() - Method in class loci.poi.hssf.record.DrawingGroupRecord

getRecordName() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer

getRecordName() - Method in class loci.poi.hssf.record.DrawingSelectionRecord

getRecordName() - Method in class loci.poi.hssf.record.EscherAggregate

getRecordOffset() - Method in class loci.poi.hssf.record.RecordInputStream

getRecords() - Method in class loci.poi.hssf.model.Sheet

getRecords() - Method in class loci.poi.hssf.model.Workbook

getRecords() - Method in class loci.poi.hssf.model.WorkbookRecordList

getRecordSize() - Method in class loci.poi.ddf.EscherBitmapBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBlipRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBSERecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherClientAnchorRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherClientDataRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherContainerRecord

getRecordSize() - Method in class loci.poi.ddf.EscherDggRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherDgRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherMetafileBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherOptRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherPictBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherRecord

Subclasses should effeciently return the number of bytes required to serialize the record.

getRecordSize() - Method in class loci.poi.ddf.EscherSpgrRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherSpRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherTextboxRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.UnknownEscherRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Size of record (including 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

getRecordSize() - Method in class loci.poi.hssf.record.AreaFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AreaRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisParentRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisUsedRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BackupRecord

getRecordSize() - Method in class loci.poi.hssf.record.BarRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BeginRecord

getRecordSize() - Method in class loci.poi.hssf.record.BlankRecord

getRecordSize() - Method in class loci.poi.hssf.record.BOFRecord

getRecordSize() - Method in class loci.poi.hssf.record.BookBoolRecord

getRecordSize() - Method in class loci.poi.hssf.record.BoolErrRecord

getRecordSize() - Method in class loci.poi.hssf.record.BottomMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BoundSheetRecord

getRecordSize() - Method in class loci.poi.hssf.record.CalcCountRecord

getRecordSize() - Method in class loci.poi.hssf.record.CalcModeRecord

getRecordSize() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.ChartFormatRecord

getRecordSize() - Method in class loci.poi.hssf.record.ChartRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.CodepageRecord

getRecordSize() - Method in class loci.poi.hssf.record.ColumnInfoRecord

getRecordSize() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.CountryRecord

getRecordSize() - Method in class loci.poi.hssf.record.DataFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DateWindow1904Record

getRecordSize() - Method in class loci.poi.hssf.record.DatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DBCellRecord

getRecordSize() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

getRecordSize() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

getRecordSize() - Method in class loci.poi.hssf.record.DeltaRecord

getRecordSize() - Method in class loci.poi.hssf.record.DimensionsRecord

getRecordSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord

Size of record (including 4 byte headers for all sections)

getRecordSize() - Method in class loci.poi.hssf.record.DrawingRecord

getRecordSize() - Method in class loci.poi.hssf.record.DSFRecord

getRecordSize() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.EndRecord

getRecordSize() - Method in class loci.poi.hssf.record.EndSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.EOFRecord

getRecordSize() - Method in class loci.poi.hssf.record.EscherAggregate

The number of bytes required to serialize this record.

getRecordSize() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetRecord

getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

returns the record size

getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTRecord

Returns the size of this record

getRecordSize() - Method in class loci.poi.hssf.record.FilePassRecord

getRecordSize() - Method in class loci.poi.hssf.record.FileSharingRecord

getRecordSize() - Method in class loci.poi.hssf.record.FnGroupCountRecord

getRecordSize() - Method in class loci.poi.hssf.record.FontBasisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.FontIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.FontRecord

getRecordSize() - Method in class loci.poi.hssf.record.FooterRecord

getRecordSize() - Method in class loci.poi.hssf.record.FormatRecord

getRecordSize() - Method in class loci.poi.hssf.record.FormulaRecord

getRecordSize() - Method in class loci.poi.hssf.record.FrameRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.GridsetRecord

getRecordSize() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.GutsRecord

getRecordSize() - Method in class loci.poi.hssf.record.HCenterRecord

getRecordSize() - Method in class loci.poi.hssf.record.HeaderRecord

getRecordSize() - Method in class loci.poi.hssf.record.HideObjRecord

getRecordSize() - Method in class loci.poi.hssf.record.IndexRecord

getRecordSize() - Method in class loci.poi.hssf.record.InterfaceEndRecord

getRecordSize() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

getRecordSize() - Method in class loci.poi.hssf.record.IterationRecord

getRecordSize() - Method in class loci.poi.hssf.record.LabelSSTRecord

getRecordSize() - Method in class loci.poi.hssf.record.LeftMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LegendRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LineFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LinkedDataRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.MergeCellsRecord

getRecordSize() - Method in class loci.poi.hssf.record.MMSRecord

getRecordSize() - Method in class loci.poi.hssf.record.NameRecord

returns the record size

getRecordSize() - Method in class loci.poi.hssf.record.NoteRecord

Size of record

getRecordSize() - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Size of record

getRecordSize() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.NumberRecord

getRecordSize() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.ObjectProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.ObjRecord

Size of record (excluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PageBreakRecord

getRecordSize() - Method in class loci.poi.hssf.record.PaletteRecord

getRecordSize() - Method in class loci.poi.hssf.record.PaneRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PasswordRecord

getRecordSize() - Method in class loci.poi.hssf.record.PasswordRev4Record

getRecordSize() - Method in class loci.poi.hssf.record.PlotAreaRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PrecisionRecord

getRecordSize() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

getRecordSize() - Method in class loci.poi.hssf.record.PrintHeadersRecord

getRecordSize() - Method in class loci.poi.hssf.record.PrintSetupRecord

getRecordSize() - Method in class loci.poi.hssf.record.ProtectionRev4Record

getRecordSize() - Method in class loci.poi.hssf.record.ProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.RecalcIdRecord

getRecordSize() - Method in class loci.poi.hssf.record.Record

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.RefModeRecord

getRecordSize() - Method in class loci.poi.hssf.record.RefreshAllRecord

getRecordSize() - Method in class loci.poi.hssf.record.RightMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.RowRecord

getRecordSize() - Method in class loci.poi.hssf.record.SaveRecalcRecord

getRecordSize() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.SCLRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SelectionRecord

getRecordSize() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesListRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesTextRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getRecordSize() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SSTRecord

getRecordSize() - Method in class loci.poi.hssf.record.SSTRecordSizeCalculator

getRecordSize() - Method in class loci.poi.hssf.record.StringRecord

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.StyleRecord

getRecordSize() - Method in class loci.poi.hssf.record.SupBookRecord

getRecordSize() - Method in class loci.poi.hssf.record.TabIdRecord

getRecordSize() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TextObjectRecord

getRecordSize() - Method in class loci.poi.hssf.record.TextRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TickRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TopMarginRecord

Size of record (exluding 4 byte header)

getRecordSize(UnicodeString.UnicodeRecordStats) - Method in class loci.poi.hssf.record.UnicodeString

getRecordSize() - Method in class loci.poi.hssf.record.UnitsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.UnknownRecord

getRecordSize() - Method in class loci.poi.hssf.record.UseSelFSRecord

getRecordSize() - Method in class loci.poi.hssf.record.ValueRangeRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.VCenterRecord

getRecordSize() - Method in class loci.poi.hssf.record.WindowOneRecord

getRecordSize() - Method in class loci.poi.hssf.record.WindowProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.WindowTwoRecord

getRecordSize() - Method in class loci.poi.hssf.record.WriteAccessRecord

getRecordSize() - Method in class loci.poi.hssf.record.WriteProtectRecord

getRecordSize() - Method in class loci.poi.hssf.record.WSBoolRecord

getRecordSizeForBlockCount(int) - Static method in class loci.poi.hssf.record.IndexRecord

Returns the size of an INdexRecord when it needs to index the specified number of blocks

getRecordSizeForRows(int) - Static method in class loci.poi.hssf.record.DBCellRecord

Returns the size of a DBCellRecord when it needs to reference a certain number of rows

getRecordSizeForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord

Given a number of strings (in the sst), returns the size of the extsst record

getRecsize() - Method in class loci.poi.hssf.dev.BiffViewer.RecordDetails

getRectangleAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Rectangle.

getRectangleAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillColor property of Rectangle.

getRectangleFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FillRule property of Rectangle.

getRectangleFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontFamily property of Rectangle.

getRectangleFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontSize property of Rectangle.

getRectangleFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FontStyle property of Rectangle.

getRectangleFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleHeight(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleHeight(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleHeight(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Height property of Rectangle.

getRectangleHeight(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleID(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleID(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Rectangle.

getRectangleID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the LineCap property of Rectangle.

getRectangleLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleLocked(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Locked property of Rectangle.

getRectangleLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeColor property of Rectangle.

getRectangleStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeDashArray property of Rectangle.

getRectangleStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the StrokeWidth property of Rectangle.

getRectangleStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleText(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleText(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Text property of Rectangle.

getRectangleText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleTheC(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheC property of Rectangle.

getRectangleTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleTheT(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheT property of Rectangle.

getRectangleTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the TheZ property of Rectangle.

getRectangleTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleTransform(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Transform property of Rectangle.

getRectangleTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleVisible(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Visible property of Rectangle.

getRectangleVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleWidth(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Width property of Rectangle.

getRectangleWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleX(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleX(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of Rectangle.

getRectangleX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectangleY(int, int) - Method in class ome.xml.meta.AggregateMetadata

getRectangleY(int, int) - Method in class ome.xml.meta.DummyMetadata

getRectangleY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of Rectangle.

getRectangleY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRectX1() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

getRectX2() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

getRectY1() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

getRectY2() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

getRectype() - Method in class loci.poi.hssf.dev.BiffViewer.RecordDetails

getRed(int) - Method in class loci.formats.gui.Index16ColorModel

getRed(int) - Method in class loci.formats.gui.SignedColorModel

getRed(Object) - Method in class loci.formats.gui.SignedColorModel

getRed(int) - Method in class loci.formats.gui.UnsignedIntColorModel

getRed(Object) - Method in class loci.formats.gui.UnsignedIntColorModel

getRed() - Method in class loci.poi.ddf.EscherRGBProperty

getRed() - Method in class ome.xml.model.primitives.Color

Returns the red component of this color.

getRedOffset(int) - Static method in class org.libjpegturbo.turbojpeg.TJ

For the given pixel format, returns the number of bytes that the red component is offset from the start of the pixel.

getReds() - Method in class loci.formats.gui.Index16ColorModel

Return the array of red color components.

getReducedRect(Rectangle, int, int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Convert a rectangle provided in the coordinate system of the JPEG2000 reference grid to coordinates at a lower resolution level where zero denotes the lowest resolution level.

getRef() - Method in class loci.poi.ddf.EscherBSERecord

The reference count of this blip.

getReference() - Method in class loci.poi.hssf.usermodel.HSSFName

gets the reference of the named range

getReferences() - Method in interface ome.xml.model.OMEModel

getReferences() - Method in class ome.xml.model.OMEModelImpl

getReferenceType() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the reference type field for the LinkedData record.

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefAPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNAPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNVPtg

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefVPtg

getRefractiveIndex() - Method in class loci.formats.in.ND2Handler

getRefractiveIndex() - Method in class ome.xml.model.ObjectiveSettings

getREFRecordAt(int) - Method in class loci.poi.hssf.record.ExternSheetRecord

returns the REF record (ExternSheetSubRecord)

getRefreshAll() - Method in class loci.poi.hssf.record.RefreshAllRecord

get whether to refresh all external data when loading a sheet

getRelativeTime() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the relativeTime associated with this Frame.

getRemainingBytes() - Method in class loci.poi.ddf.EscherRecord.EscherRecordHeader

getRemainingData() - Method in class loci.poi.ddf.EscherBSERecord

Any remaining data in this record.

getRemainingData() - Method in class loci.poi.ddf.EscherClientAnchorRecord

Any remaining data in the record

getRemainingData() - Method in class loci.poi.ddf.EscherClientDataRecord

Any data recording this record.

getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getRenderingHints() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getRenderingHints() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getReorderedIndex(IFormatReader, String, int) - Static method in class loci.formats.FormatTools

Converts index from the given dimension order to the reader's native one.

getReorderedIndex(String, String, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Converts index from one dimension order to another.

getRepetitionRate() - Method in class ome.xml.model.Laser

getRepetitionRateUnitXsdDefault() - Static method in class ome.xml.model.Laser

getRequiredDirectories(String[]) - Method in class loci.formats.FileStitcher

getRequiredDirectories(String[]) - Method in class loci.formats.FormatReader

getRequiredDirectories(String[]) - Method in interface loci.formats.IFormatReader

Returns the number of parent directories that are important when processing the given list of files.

getRequiredDirectories(String[]) - Method in class loci.formats.ImageReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.BrukerReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.CellVoyagerReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.MIASReader

getRequiredDirectories(String[]) - Method in class loci.formats.in.OperettaReader

getRequiredDirectories(String[]) - Method in class loci.formats.ReaderWrapper

getRequiredEntries() - Static method in enum ome.jxr.ifd.IFDEntry

getRequiredVersion() - Method in class loci.poi.hssf.record.BOFRecord

get the minimum version required to read this file

getReserved() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getReserved() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

getReserved() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the reserved bits - why would you do this?

getReserved1() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved1 field for the Axis record.

getReserved1() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved1 field for the CommonObjectData record.

getReserved2() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved2 field for the Axis record.

getReserved2() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved2 field for the CommonObjectData record.

getReserved2() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getReserved3() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved3 field for the Axis record.

getReserved3() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved3 field for the CommonObjectData record.

getReserved3() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getReserved4() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved4 field for the Axis record.

getReserved4() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved4 field for the TextObjectBase record.

getReserved5() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved5 field for the TextObjectBase record.

getReserved6() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved6 field for the TextObjectBase record.

getReserved7() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved7 field for the TextObjectBase record.

getResetMQ() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets resetMQ

getResolution() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Gets resolution.

getResolution() - Method in class loci.formats.FormatReader

getResolution() - Method in interface loci.formats.IFormatReader

Get the current resolution level.

getResolution() - Method in class loci.formats.ImageReader

getResolution() - Method in class loci.formats.in.FilePatternReader

getResolution() - Method in class loci.formats.ReaderWrapper

getResolution(ImageReader) - Method in class loci.poi.hssf.usermodel.HSSFPicture

The metadata of PNG and JPEG can contain the width of a pixel in millimeters.

getResolutionCount() - Method in class loci.formats.FormatReader

getResolutionCount() - Method in interface loci.formats.IFormatReader

Return the number of resolutions for the current series.

getResolutionCount() - Method in class loci.formats.ImageReader

getResolutionCount() - Method in class loci.formats.in.FilePatternReader

getResolutionCount() - Method in class loci.formats.ReaderWrapper

getResolutionLevels() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of resolution levels the file JPEG 2000 data has.

getResolutionMultiplier() - Method in class loci.formats.tiff.IFD

Retrieve the value by which to multiply the X and Y resolution so that the resolutions are in microns per pixel.

getResolutionUnitFromComment(IFD) - Method in class loci.formats.in.BaseTiffReader

Extracts the resolution unit symbol from the comment field

getResource(String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getRestartMarkers() - Method in interface loci.formats.services.JPEGTurboService

getRestartMarkers() - Method in class loci.formats.services.JPEGTurboServiceImpl

getResult() - Method in interface mdbtools.dbengine.functions.Aggregate

getResult() - Method in class mdbtools.dbengine.functions.Count

getResult() - Method in class mdbtools.dbengine.functions.Max

getResult() - Method in class mdbtools.dbengine.functions.Min

getResult() - Method in class mdbtools.dbengine.functions.Sum

getResult() - Method in class mdbtools.dbengine.tasks.AggregateQuery

getResult() - Method in class mdbtools.dbengine.tasks.FilterData

getResult() - Method in class mdbtools.dbengine.tasks.LoadData

getResult() - Method in class mdbtools.dbengine.tasks.NonAggregateQuery

getResult() - Method in class mdbtools.dbengine.tasks.SimpleSort

getResult() - Method in interface mdbtools.dbengine.tasks.Task

getResULX(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getResULX(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getResULX(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal coordinate of the upper-left corner of the specified resolution level in the given component of the current tile.

getResULY(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical coordinate of the upper-left corner of the specified component in the given component of the current tile.

getResULY(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getResULY(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical coordinate of the upper-left corner of the specified resolution in the given component of the current tile.

getRevision(String[]) - Method in class loci.plugins.macro.LociFunctions

getRevNumber() - Method in class loci.poi.hpsf.SummaryInformation

Returns the revision number (or null).

getRGB() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode

getRGBChannelCount() - Method in class loci.formats.FormatReader

getRGBChannelCount() - Method in interface loci.formats.IFormatReader

Gets the number of channels returned with each call to openBytes.

getRGBChannelCount() - Method in class loci.formats.ImageReader

getRGBChannelCount() - Method in class loci.formats.in.FilePatternReader

getRGBChannelCount() - Method in class loci.formats.ReaderWrapper

getRGBChannelCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getRgbColor() - Method in class loci.poi.ddf.EscherRGBProperty

getRgbColor() - Method in class loci.poi.hssf.record.TextRecord

Get the rgbColor field for the Text record.

getRichStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a string - for numeric cells we throw an exception.

getRight() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the right side of the footer.

getRight() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the right side of the header.

getRight(int) - Method in class loci.poi.util.BinaryTree.Node

get the right node

getRight() - Method in class mdbtools.dbengine.sql.Condition

getRight() - Method in class mdbtools.dbengine.sql.Equation

getRight() - Method in class mdbtools.dbengine.sql.Join

getRightBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getRightBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the right border color

getRightChild(BinaryTree.Node, int) - Static method in class loci.poi.util.BinaryTree

get a node's right child.

getRights() - Method in class ome.xml.model.OME

getRightsHeld() - Method in class ome.xml.model.Rights

getRightsHolder() - Method in class ome.xml.model.Rights

getRightsRightsHeld() - Method in class ome.xml.meta.AggregateMetadata

getRightsRightsHeld() - Method in class ome.xml.meta.DummyMetadata

getRightsRightsHeld() - Method in interface ome.xml.meta.MetadataRetrieve

Get the RightsHeld property of Rights.

getRightsRightsHeld() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRightsRightsHolder() - Method in class ome.xml.meta.AggregateMetadata

getRightsRightsHolder() - Method in class ome.xml.meta.DummyMetadata

getRightsRightsHolder() - Method in interface ome.xml.meta.MetadataRetrieve

Get the RightsHolder property of Rights.

getRightsRightsHolder() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRKField() - Method in class loci.poi.hssf.record.RKRecord

getRKNumber() - Method in class loci.poi.hssf.record.RKRecord

Extract the value of the number

getRKNumberAt(int) - Method in class loci.poi.hssf.record.MulRKRecord

returns the rk number for column (coffset = column - field_2_first_col)

getRKType() - Method in class loci.poi.hssf.record.RKRecord

Get the type of the number

getRoi() - Method in class loci.plugins.util.RecordedImageProcessor

getROI(int) - Method in class ome.xml.model.OME

getROIAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getROIAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getROIAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of ROI.

getROIAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROIAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getROIAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getROIAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in ROI.

getROIAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROICount() - Method in class ome.xml.meta.AggregateMetadata

getROICount() - Method in class ome.xml.meta.DummyMetadata

getROICount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of ROI elements.

getROICount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROIDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getROIDescription(int) - Method in class ome.xml.meta.DummyMetadata

getROIDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of ROI.

getROIDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROIID(int) - Method in class ome.xml.meta.AggregateMetadata

getROIID(int) - Method in class ome.xml.meta.DummyMetadata

getROIID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of ROI.

getROIID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROILen() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Gives the length to read in current packet body to get all ROI information

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This functions gets a DataBlk the size of the current code-block an fills this block with the ROI mask.

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

This functions gets a DataBlk the size of the current code-block and fills this block with the ROI mask.

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This functions gets a DataBlk with the size of the current code-block and fills it with the ROI mask.

getROIMaskGenerator() - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function returns the ROI mask generator.

getROIName(int) - Method in class ome.xml.meta.AggregateMetadata

getROIName(int) - Method in class ome.xml.meta.DummyMetadata

getROIName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of ROI.

getROIName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROINamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getROINamespace(int) - Method in class ome.xml.meta.DummyMetadata

getROINamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of ROI.

getROINamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getROIs() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets ROIs

getROIs() - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This function returns the ROIs in the image

getROIs() - Method in class loci.formats.in.ND2Handler

getRoot() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

get the root entry

getRoot() - Method in class loci.poi.poifs.property.PropertyTable

Get the root property

getRoot() - Method in class ome.specification.XMLMockObjects

Returns the root of the XML file.

getRoot() - Method in class ome.xml.meta.AggregateMetadata

Unsupported with an AggregateMetadata.

getRoot() - Method in class ome.xml.meta.DummyMetadata

getRoot() - Method in class ome.xml.meta.FilterMetadata

getRoot() - Method in interface ome.xml.meta.MetadataStore

Get the root node of the metadata.

getRoot() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getRootDirectory() - Method in class loci.tests.testng.ConfigurationTree

Returns the toot directory holding the data

getRootIFD() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getRootIFDOffset() - Method in class ome.jxr.parser.FileParser

getRootName() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat

getRotation() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the degree of rotation.

getRotation() - Method in class loci.poi.hssf.record.TextRecord

getRotation() - Method in class loci.poi.hssf.record.TickRecord

rotate text (0=none, 1=normal, 2=90 degrees counterclockwise, 3=90 degrees clockwise)

getRotation() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the degree of rotation for the text in the cell

getRotationTransform(double) - Method in class loci.formats.FormatReader

Construct an AffineTransform corresponding to the given angle.

getRow() - Method in class loci.formats.in.OMEXMLReader.BinData

getRow(String) - Method in class loci.formats.in.ScreenReader

getRow(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor

getRow(int) - Method in class loci.poi.hssf.model.Sheet

get the NEXT (from LOC) RowRecord where rownumber matches the given rownum.

getRow() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getRow() - Method in class loci.poi.hssf.record.BlankRecord

get the row this cell occurs on

getRow() - Method in class loci.poi.hssf.record.BoolErrRecord

getRow() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

get the row this cell occurs on

getRow() - Method in class loci.poi.hssf.record.formula.ExpPtg

getRow() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getRow() - Method in class loci.poi.hssf.record.formula.ReferencePtg

Returns the row number as a short, which will be wrapped (negative) for values between 32769 and 65535

getRow() - Method in class loci.poi.hssf.record.FormulaRecord

getRow() - Method in class loci.poi.hssf.record.LabelRecord

getRow() - Method in class loci.poi.hssf.record.LabelSSTRecord

getRow() - Method in class loci.poi.hssf.record.MulBlankRecord

get the row number of the cells this represents

getRow() - Method in class loci.poi.hssf.record.MulRKRecord

getRow() - Method in class loci.poi.hssf.record.NoteRecord

Return the row that contains the comment

getRow() - Method in class loci.poi.hssf.record.NumberRecord

getRow() - Method in class loci.poi.hssf.record.RKRecord

getRow() - Method in class loci.poi.hssf.usermodel.HSSFComment

Return the row of the cell that contains the comment

getRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the logical row (not physical) 0-based.

getRow() - Method in class loci.poi.hssf.util.CellReference

getRow(int) - Method in class mdbtools.dbengine.MemoryData

getRow() - Method in class ome.xml.model.Well

getRow1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the top-left corner of the shape.

getRow1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getRow2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the bottom-right corner of the current shape.

getRow2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getRowAndColumn(int) - Method in class loci.formats.in.ScreenReader

getRowAsInt() - Method in class loci.poi.hssf.record.formula.ReferencePtg

Returns the row number as an int, between 0 and 65535

getRowBlockCount() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the number of row blocks.

getRowBlockSize(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

getRowBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns all the row page breaks

getRowBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Retrieves all the horizontal page breaks

getRowCellBlockSize(int, int) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Tallies a count of the size of the cell records that are attached to the rows in the range specified.

getRowCount(int) - Method in interface loci.formats.services.MetakitService

getRowCount(String) - Method in interface loci.formats.services.MetakitService

getRowCount(int) - Method in class loci.formats.services.MetakitServiceImpl

getRowCount(String) - Method in class loci.formats.services.MetakitServiceImpl

getRowCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg

getRowCount(int) - Method in class ome.metakit.MetakitReader

Retrieve the number of rows in the table with the given index.

getRowCount(String) - Method in class ome.metakit.MetakitReader

Retrieve the number of rows in the named table.

getRowCountForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the number of physical rows within a block

getRowData(String[], double[]) - Method in class loci.formats.in.TextReader

Parses numerical row data from the given tokens.

getRowData(int, String) - Method in interface loci.formats.services.MetakitService

getRowData(int, int) - Method in interface loci.formats.services.MetakitService

getRowData(int, String) - Method in class loci.formats.services.MetakitServiceImpl

getRowData(int, int) - Method in class loci.formats.services.MetakitServiceImpl

getRowData(int, int) - Method in class ome.metakit.MetakitReader

Retrieve the given row of data from the table with the given index.

getRowData(int, String) - Method in class ome.metakit.MetakitReader

Retrieve the given row of data from the named table.

getRowFrom() - Method in class loci.poi.hssf.util.Region

get the upper left hand corner row number

getRowHeight() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

get the default row height

getRowHeightInPoints(HSSFSheet, int) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

getRowLevelMax() - Method in class loci.poi.hssf.record.GutsRecord

get the maximum outline level for the row gutter.

getRowNamingConvention() - Method in class ome.xml.model.Plate

getRowNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

get row number this row represents

getRowNumber() - Method in class loci.poi.hssf.record.RowRecord

get the logical row number for this row (0 based index)

getRowOffset() - Method in class loci.poi.hssf.record.DBCellRecord

gets offset from the start of this DBCellRecord to the start of the first cell in the next DBCell block.

getRowRecord() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the lowlevel RowRecord represented by this object - should only be called by other parts of the high level API

getRows() - Method in class ome.xml.model.Plate

getRowsPerStrip() - Method in class loci.formats.tiff.IFD

Retrieves the number of rows per strip for image (TIFF tag RowsPerStrip) from this IFD.

getRowSumsBelow() - Method in class loci.poi.hssf.record.WSBoolRecord

get if row summaries appear below detail in the outline

getRowSumsBelow() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get if row summaries appear below detail in the outline

getRowSumsRight() - Method in class loci.poi.hssf.record.WSBoolRecord

get if col summaries appear right of the detail in the outline

getRowSumsRight() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get if col summaries appear right of the detail in the outline

getRowTo() - Method in class loci.poi.hssf.util.Region

get the lower right hand corner row number

getRPNPtg() - Method in class loci.poi.hssf.model.FormulaParser

API call to retrive the array of Ptgs created as a result of the parsing

getRPNPtg(int) - Method in class loci.poi.hssf.model.FormulaParser

getSample(BitBuffer, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

Deprecated.

getSample(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

getSampleModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the SampleModel of the image.

getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getSamples(IFD, byte[]) - Method in class loci.formats.tiff.TiffParser

getSamples(IFD, byte[], int, int, long, long) - Method in class loci.formats.tiff.TiffParser

getSamples(IFD, byte[], int, int, long, long, int, int) - Method in class loci.formats.tiff.TiffParser

getSamplesPerPixel() - Method in class loci.formats.FormatWriter

Retrieve the number of samples per pixel for the current series.

getSamplesPerPixel(int) - Method in class loci.formats.FormatWriter

Retrieve the number of samples per pixel for given series.

getSamplesPerPixel() - Method in class loci.formats.tiff.IFD

Retrieves the number of samples per pixel for the image (TIFF tag SamplesPerPixel) from this IFD.

getSamplesPerPixel() - Method in class ome.xml.model.Channel

getSavedInPageBreakPreview() - Method in class loci.poi.hssf.record.WindowTwoRecord

was the sheet saved in page break view

getSaveLinkValues() - Method in class loci.poi.hssf.record.BookBoolRecord

get the save ext links flag

getSBAT() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Get the SBAT

getSBATBlockCount() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Get the number of SBAT blocks

getSBATStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader

getScale() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns true when scaling of the thumbnail is desired, false if cropping is desired.

getScale() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the scale field for the FontBasis record.

getScale() - Method in class loci.poi.hssf.record.PrintSetupRecord

getScale() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the scale.

getScaled(int) - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor

Returns the scaled value of dimension.

getScaledHeight(int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the height of the largest scaled down image that the TurboJPEG decompressor can generate without exceeding the desired image width and height.

getScaledWidth(int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the width of the largest scaled down image that the TurboJPEG decompressor can generate without exceeding the desired image width and height.

getScaleFactor() - Method in class ome.units.unit.Unit

getScalingFactors() - Static method in class org.libjpegturbo.turbojpeg.TJ

Returns a list of fractional scaling factors that the JPEG decompressor in this implementation of TurboJPEG supports.

getScanline(int) - Method in class loci.formats.codec.JPEGTileDecoder

getScanlinePad() - Method in class loci.formats.in.NativeND2Reader

getScanNames() - Method in class loci.formats.in.L2DReader

Return a list of scan names.

getScenarioProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether scenario protection is enabled or disabled

getSchemaPath() - Method in class loci.common.xml.ValidationSAXHandler

getScreen(int) - Method in class ome.xml.model.OME

getScreen() - Method in class ome.xml.model.Reagent

getScreenAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getScreenAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getScreenAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of Screen.

getScreenAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata

getScreenAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Screen.

getScreenAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenCount() - Method in class ome.xml.meta.AggregateMetadata

getScreenCount() - Method in class ome.xml.meta.DummyMetadata

getScreenCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Screen elements.

getScreenCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenDescription(int) - Method in class ome.xml.meta.DummyMetadata

getScreenDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of Screen.

getScreenDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenID(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenID(int) - Method in class ome.xml.meta.DummyMetadata

getScreenID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of Screen.

getScreenID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenName(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenName(int) - Method in class ome.xml.meta.DummyMetadata

getScreenName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of Screen.

getScreenName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenPlateRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getScreenPlateRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getScreenPlateRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PlateRef property of Screen.

getScreenPlateRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenProtocolDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenProtocolDescription(int) - Method in class ome.xml.meta.DummyMetadata

getScreenProtocolDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ProtocolDescription property of Screen.

getScreenProtocolDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenProtocolIdentifier(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenProtocolIdentifier(int) - Method in class ome.xml.meta.DummyMetadata

getScreenProtocolIdentifier(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ProtocolIdentifier property of Screen.

getScreenProtocolIdentifier(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenReagentSetDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenReagentSetDescription(int) - Method in class ome.xml.meta.DummyMetadata

getScreenReagentSetDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ReagentSetDescription property of Screen.

getScreenReagentSetDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenReagentSetIdentifier(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenReagentSetIdentifier(int) - Method in class ome.xml.meta.DummyMetadata

getScreenReagentSetIdentifier(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ReagentSetIdentifier property of Screen.

getScreenReagentSetIdentifier(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getScreenType(int) - Method in class ome.xml.meta.AggregateMetadata

getScreenType(int) - Method in class ome.xml.meta.DummyMetadata

getScreenType(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Type property of Screen.

getScreenType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getSecondaryUID() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the secondary UID

getSectionCount() - Method in class loci.poi.hpsf.PropertySet

Returns the number of Sections in the property set.

getSectionCount() - Method in class loci.poi.hpsf.SpecialPropertySet

getSections() - Method in class loci.poi.hpsf.PropertySet

Returns the Sections in the property set.

getSections() - Method in class loci.poi.hpsf.SpecialPropertySet

getSecurity() - Method in class loci.poi.hpsf.SummaryInformation

Returns a security code which is one of the following values:

getSegmentLength() - Method in class com.sun.media.imageio.stream.StreamSegment

Returns the length of the segment.

getSelected() - Method in class loci.poi.hssf.record.WindowTwoRecord

sheet tab is selected

getSelectedTab() - Method in class loci.poi.hssf.record.WindowOneRecord

get the selected tab number

getSelectedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the tab whose data is actually seen when the sheet is opened.

getSelection() - Method in class loci.poi.hssf.model.Sheet

getSequence() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the <Sequence> containing this <Frame>.

getSequence(int) - Method in class loci.formats.in.PrairieMetadata

Gets the Sequence at the given cycle.

getSequences() - Method in class loci.formats.in.PrairieMetadata

Gets all Sequences, ordered by cycle.

getSerialNumber() - Method in class ome.xml.model.ManufacturerSpec

getSeries() - Method in class loci.formats.FileStitcher

getSeries() - Method in class loci.formats.FormatReader

getSeries() - Method in class loci.formats.FormatWriter

getSeries() - Method in interface loci.formats.IFormatReader

Gets the currently active series.

getSeries() - Method in interface loci.formats.IFormatWriter

Returns the current series.

getSeries() - Method in class loci.formats.ImageReader

getSeries() - Method in class loci.formats.ImageWriter

getSeries() - Method in class loci.formats.in.FilePatternReader

getSeries() - Method in class loci.formats.ReaderWrapper

getSeries() - Method in class loci.formats.WriterWrapper

getSeries(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesCount() - Method in class loci.formats.FileStitcher

getSeriesCount() - Method in class loci.formats.FormatReader

getSeriesCount() - Method in interface loci.formats.IFormatReader

Gets the number of series in this file.

getSeriesCount() - Method in class loci.formats.ImageReader

getSeriesCount() - Method in class loci.formats.in.FilePatternReader

getSeriesCount() - Method in class loci.formats.in.ND2Handler

getSeriesCount() - Method in class loci.formats.ReaderWrapper

getSeriesCount() - Method in class loci.formats.TileStitcher

getSeriesCount() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getSeriesCount(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesCount() - Method in class loci.tests.testng.Configuration

getSeriesHashtable(int) - Method in class loci.formats.in.LeicaHandler

getSeriesIndex(int, int, int) - Method in class loci.formats.in.MetamorphTiffReader

getSeriesIndex(int, int) - Method in class loci.formats.in.ScreenReader

getSeriesIndex() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the series index field for the DataFormat record.

getSeriesLabel(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getSeriesMeta(String) - Method in class loci.formats.FormatReader

Gets an entry from the metadata table for the current series.

getSeriesMetadata() - Method in class loci.formats.FileStitcher

getSeriesMetadata() - Method in class loci.formats.FormatReader

getSeriesMetadata() - Method in interface loci.formats.IFormatReader

Obtains the hashtable containing metadata field/value pairs from the current series in the current file.

getSeriesMetadata() - Method in class loci.formats.ImageReader

getSeriesMetadata() - Method in class loci.formats.in.FilePatternReader

getSeriesMetadata() - Method in class loci.formats.ReaderWrapper

getSeriesMetadataValue(String) - Method in class loci.formats.FormatReader

getSeriesMetadataValue(String) - Method in interface loci.formats.IFormatReader

Obtains the specified metadata field's value for the current series in the current file.

getSeriesMetadataValue(String) - Method in class loci.formats.ImageReader

getSeriesMetadataValue(String) - Method in class loci.formats.in.FilePatternReader

getSeriesMetadataValue(String) - Method in class loci.formats.ReaderWrapper

getSeriesMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesName(String[]) - Method in class loci.plugins.macro.LociFunctions

getSeriesNumber() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the series number field for the DataFormat record.

getSeriesNumbers() - Method in class loci.poi.hssf.record.SeriesListRecord

Get the series numbers field for the SeriesList record.

getSeriesUsedFiles(boolean) - Method in class loci.formats.DelegateReader

getSeriesUsedFiles() - Method in class loci.formats.FileStitcher

getSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher

getSeriesUsedFiles() - Method in class loci.formats.FormatReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader

getSeriesUsedFiles() - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open the current series.

getSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open the current series.

getSeriesUsedFiles() - Method in class loci.formats.ImageReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AFIReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AnalyzeReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.APLReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BDReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BioRadReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BrukerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellomicsReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellSensReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellVoyagerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellWorxReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DeltavisionReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DicomReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FakeReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FilePatternReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FlexReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FujiReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FV1000Reader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HamamatsuVMSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HitachiReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ICSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImagicReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImprovisionTiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.InCellReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.JEOLReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.JPEGReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.L2DReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.LeicaReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MetamorphReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MIASReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MicromanagerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NativeQTReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NDPISReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NiftiReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NRRDReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OMETiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OperettaReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PCORAWReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PDSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PerkinElmerReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PrairieReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScanrReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScreenReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.SlidebookTiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TCSReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TiffReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TillVisionReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TrestleReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VarianFDFReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VisitechReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VolocityReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissCZIReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissLSMReader

getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissTIFFReader

getSeriesUsedFiles() - Method in class loci.formats.ReaderWrapper

getSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper

getService() - Method in class loci.formats.Memoizer

getSHA1() - Method in class ome.xml.model.External

getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

Returns a TIFFIFD wherein all fields from the BaselineTIFFTagSet are copied by value and all other fields copied by reference.

getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

Returns a TIFFImageMetadata wherein all fields in the root IFD from the BaselineTIFFTagSet are copied by value and all other fields copied by reference.

getShape(String) - Method in interface loci.formats.services.JHDFService

Retrieves the shape of a dataset.

getShape(String) - Method in class loci.formats.services.JHDFServiceImpl

getShape(int) - Method in class ome.xml.model.Union

getShapeAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getShapeAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getShapeAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of AnnotationRef elements in Shape.

getShapeAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getShapeCount(int) - Method in class ome.xml.meta.AggregateMetadata

getShapeCount(int) - Method in class ome.xml.meta.DummyMetadata

getShapeCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of Shape elements.

getShapeCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getShapeId() - Method in class loci.poi.ddf.EscherSpRecord

getShapeId() - Method in class loci.poi.hssf.record.NoteRecord

Object id for OBJ record that contains the comment

getShapeIdMax() - Method in class loci.poi.ddf.EscherDggRecord

getShapeType() - Method in class loci.poi.hssf.usermodel.HSSFSimpleShape

Gets the shape type.

getShapeType(int, int) - Method in class ome.xml.meta.AggregateMetadata

getShapeType(int, int) - Method in class ome.xml.meta.DummyMetadata

getShapeType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the type of a Shape.

getShapeType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getSheet() - Method in class loci.poi.hssf.usermodel.HSSFSheet

used internally in the API to get the low level Sheet record represented by this Object.

getSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Get sheet with the given name

getSheetAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Get the HSSFSheet object at the given index.

getSheetIndex(String) - Method in class loci.poi.hssf.model.Workbook

get the sheet's index

getSheetIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the index of the sheet by his name

getSheetIndex(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the index of the given sheet

getSheetIndexFromExternSheetIndex(int) - Method in class loci.poi.hssf.model.Workbook

Finds the sheet index for a particular external sheet number.

getSheetName(int) - Method in class loci.poi.hssf.model.Workbook

gets the name for a given sheet.

getSheetname() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the sheetname for this sheet.

getSheetName() - Method in class loci.poi.hssf.usermodel.HSSFName

Get the sheets name which this named range is referenced to

getSheetName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the sheet name

getSheetName() - Method in class loci.poi.hssf.util.CellReference

getSheetName() - Method in class loci.poi.hssf.util.RangeAddress

getSheetName(int) - Method in class loci.poi.hssf.util.SheetReferences

getSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the length of the sheetname in characters

getSheetReferences() - Method in class loci.poi.hssf.model.Workbook

getShort(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a short value from a byte array

getShort(byte[]) - Static method in class loci.poi.util.LittleEndian

get a short value from the beginning of a byte array

getShortArray(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a short array from a byte array.

getShortDescription() - Method in interface loci.poi.poifs.dev.POIFSViewable

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.DocumentNode

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.property.Property

Provides a short description of the object, to be used when a POIFSViewable object has not provided its contents.

getShortElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its short value from an IIOMetadataNode.

getShortRawValue(short) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, unshifted

getShorts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShorts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShorts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShortValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getShortValue(short) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, appropriately shifted right, as a short.

getShowMetadataInfo() - Method in class loci.plugins.in.ImporterOptions

getShowOMEXMLInfo() - Method in class loci.plugins.in.ImporterOptions

getShowROIsInfo() - Method in class loci.plugins.in.ImporterOptions

getShrinkToFit() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to shrink the text to fit

getSid() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

getSid() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

It's an aggregate...

getSid() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.AreaFormatRecord

getSid() - Method in class loci.poi.hssf.record.AreaRecord

getSid() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

getSid() - Method in class loci.poi.hssf.record.AxisOptionsRecord

getSid() - Method in class loci.poi.hssf.record.AxisParentRecord

getSid() - Method in class loci.poi.hssf.record.AxisRecord

getSid() - Method in class loci.poi.hssf.record.AxisUsedRecord

getSid() - Method in class loci.poi.hssf.record.BackupRecord

getSid() - Method in class loci.poi.hssf.record.BarRecord

getSid() - Method in class loci.poi.hssf.record.BeginRecord

getSid() - Method in class loci.poi.hssf.record.BlankRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.BOFRecord

getSid() - Method in class loci.poi.hssf.record.BookBoolRecord

getSid() - Method in class loci.poi.hssf.record.BoolErrRecord

getSid() - Method in class loci.poi.hssf.record.BottomMarginRecord

getSid() - Method in class loci.poi.hssf.record.BoundSheetRecord

getSid() - Method in class loci.poi.hssf.record.CalcCountRecord

getSid() - Method in class loci.poi.hssf.record.CalcModeRecord

getSid() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

getSid() - Method in class loci.poi.hssf.record.ChartFormatRecord

getSid() - Method in class loci.poi.hssf.record.ChartRecord

getSid() - Method in class loci.poi.hssf.record.CodepageRecord

getSid() - Method in class loci.poi.hssf.record.ColumnInfoRecord

getSid() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

getSid() - Method in class loci.poi.hssf.record.ContinueRecord

getSid() - Method in class loci.poi.hssf.record.CountryRecord

getSid() - Method in class loci.poi.hssf.record.DataFormatRecord

getSid() - Method in class loci.poi.hssf.record.DateWindow1904Record

getSid() - Method in class loci.poi.hssf.record.DatRecord

getSid() - Method in class loci.poi.hssf.record.DBCellRecord

getSid() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

getSid() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

getSid() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

getSid() - Method in class loci.poi.hssf.record.DeltaRecord

getSid() - Method in class loci.poi.hssf.record.DimensionsRecord

getSid() - Method in class loci.poi.hssf.record.DrawingGroupRecord

getSid() - Method in class loci.poi.hssf.record.DrawingRecord

getSid() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer

getSid() - Method in class loci.poi.hssf.record.DrawingSelectionRecord

getSid() - Method in class loci.poi.hssf.record.DSFRecord

getSid() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

getSid() - Method in class loci.poi.hssf.record.EndRecord

getSid() - Method in class loci.poi.hssf.record.EndSubRecord

getSid() - Method in class loci.poi.hssf.record.EOFRecord

getSid() - Method in class loci.poi.hssf.record.EscherAggregate

getSid() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

getSid() - Method in class loci.poi.hssf.record.ExternSheetRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getSid() - Method in class loci.poi.hssf.record.ExtSSTRecord

getSid() - Method in class loci.poi.hssf.record.FilePassRecord

getSid() - Method in class loci.poi.hssf.record.FileSharingRecord

getSid() - Method in class loci.poi.hssf.record.FnGroupCountRecord

getSid() - Method in class loci.poi.hssf.record.FontBasisRecord

getSid() - Method in class loci.poi.hssf.record.FontIndexRecord

getSid() - Method in class loci.poi.hssf.record.FontRecord

getSid() - Method in class loci.poi.hssf.record.FooterRecord

getSid() - Method in class loci.poi.hssf.record.FormatRecord

getSid() - Method in class loci.poi.hssf.record.FormulaRecord

getSid() - Method in class loci.poi.hssf.record.FrameRecord

getSid() - Method in class loci.poi.hssf.record.GridsetRecord

getSid() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

getSid() - Method in class loci.poi.hssf.record.GutsRecord

getSid() - Method in class loci.poi.hssf.record.HCenterRecord

getSid() - Method in class loci.poi.hssf.record.HeaderRecord

getSid() - Method in class loci.poi.hssf.record.HideObjRecord

getSid() - Method in class loci.poi.hssf.record.HorizontalPageBreakRecord

getSid() - Method in class loci.poi.hssf.record.IndexRecord

getSid() - Method in class loci.poi.hssf.record.InterfaceEndRecord

getSid() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

getSid() - Method in class loci.poi.hssf.record.IterationRecord

getSid() - Method in class loci.poi.hssf.record.LabelRecord

getSid() - Method in class loci.poi.hssf.record.LabelSSTRecord

getSid() - Method in class loci.poi.hssf.record.LeftMarginRecord

getSid() - Method in class loci.poi.hssf.record.LegendRecord

getSid() - Method in class loci.poi.hssf.record.LineFormatRecord

getSid() - Method in class loci.poi.hssf.record.LinkedDataRecord

getSid() - Method in class loci.poi.hssf.record.MergeCellsRecord

getSid() - Method in class loci.poi.hssf.record.MMSRecord

getSid() - Method in class loci.poi.hssf.record.MulBlankRecord

getSid() - Method in class loci.poi.hssf.record.MulRKRecord

getSid() - Method in class loci.poi.hssf.record.NameRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.NoteRecord

getSid() - Method in class loci.poi.hssf.record.NoteStructureSubRecord

getSid() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

getSid() - Method in class loci.poi.hssf.record.NumberRecord

getSid() - Method in class loci.poi.hssf.record.ObjectLinkRecord

getSid() - Method in class loci.poi.hssf.record.ObjectProtectRecord

getSid() - Method in class loci.poi.hssf.record.ObjRecord

getSid() - Method in class loci.poi.hssf.record.PageBreakRecord

getSid() - Method in class loci.poi.hssf.record.PaletteRecord

getSid() - Method in class loci.poi.hssf.record.PaneRecord

getSid() - Method in class loci.poi.hssf.record.PasswordRecord

getSid() - Method in class loci.poi.hssf.record.PasswordRev4Record

getSid() - Method in class loci.poi.hssf.record.PlotAreaRecord

getSid() - Method in class loci.poi.hssf.record.PlotGrowthRecord

getSid() - Method in class loci.poi.hssf.record.PrecisionRecord

getSid() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

getSid() - Method in class loci.poi.hssf.record.PrintHeadersRecord

getSid() - Method in class loci.poi.hssf.record.PrintSetupRecord

getSid() - Method in class loci.poi.hssf.record.ProtectionRev4Record

getSid() - Method in class loci.poi.hssf.record.ProtectRecord

getSid() - Method in class loci.poi.hssf.record.RecalcIdRecord

getSid() - Method in class loci.poi.hssf.record.Record

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.RecordInputStream

getSid() - Method in class loci.poi.hssf.record.RefModeRecord

getSid() - Method in class loci.poi.hssf.record.RefreshAllRecord

getSid() - Method in class loci.poi.hssf.record.RightMarginRecord

getSid() - Method in class loci.poi.hssf.record.RKRecord

getSid() - Method in class loci.poi.hssf.record.RowRecord

getSid() - Method in class loci.poi.hssf.record.SaveRecalcRecord

getSid() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

getSid() - Method in class loci.poi.hssf.record.SCLRecord

getSid() - Method in class loci.poi.hssf.record.SelectionRecord

getSid() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

getSid() - Method in class loci.poi.hssf.record.SeriesIndexRecord

getSid() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

getSid() - Method in class loci.poi.hssf.record.SeriesListRecord

getSid() - Method in class loci.poi.hssf.record.SeriesRecord

getSid() - Method in class loci.poi.hssf.record.SeriesTextRecord

getSid() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

getSid() - Method in class loci.poi.hssf.record.SharedFormulaRecord

getSid() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

getSid() - Method in class loci.poi.hssf.record.SSTRecord

getSid() - Method in class loci.poi.hssf.record.StringRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.StyleRecord

getSid() - Method in class loci.poi.hssf.record.SupBookRecord

getSid() - Method in class loci.poi.hssf.record.TabIdRecord

getSid() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

getSid() - Method in class loci.poi.hssf.record.TextRecord

getSid() - Method in class loci.poi.hssf.record.TickRecord

getSid() - Method in class loci.poi.hssf.record.TopMarginRecord

getSid() - Method in class loci.poi.hssf.record.UnicodeString

getSid() - Method in class loci.poi.hssf.record.UnitsRecord

getSid() - Method in class loci.poi.hssf.record.UnknownRecord

getSid() - Method in class loci.poi.hssf.record.UseSelFSRecord

getSid() - Method in class loci.poi.hssf.record.ValueRangeRecord

getSid() - Method in class loci.poi.hssf.record.VCenterRecord

getSid() - Method in class loci.poi.hssf.record.VerticalPageBreakRecord

getSid() - Method in class loci.poi.hssf.record.WindowOneRecord

getSid() - Method in class loci.poi.hssf.record.WindowProtectRecord

getSid() - Method in class loci.poi.hssf.record.WindowTwoRecord

getSid() - Method in class loci.poi.hssf.record.WriteAccessRecord

getSid() - Method in class loci.poi.hssf.record.WriteProtectRecord

getSid() - Method in class loci.poi.hssf.record.WSBoolRecord

getSignificantBits() - Method in class ome.xml.model.Pixels

getSimpleShortArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

get a short array from a byte array.

getSingleSection() - Method in class loci.poi.hpsf.PropertySet

If the PropertySet has only a single section this method returns it.

getSize(int) - Static method in class jj2000.j2k.image.DataBlk

Returns the size in bits, given the data type.

getSize() - Method in class jj2000.j2k.util.ThreadPool

Returns the size of the pool.

getSize(Image) - Static method in class loci.formats.gui.AWTImageTools

Gets the width and height of the given AWT image, waiting for it to finish loading if necessary.

getSize() - Method in class loci.plugins.util.BFVirtualStack

getSize() - Method in class loci.poi.ddf.EscherBSERecord

Blip size in stream.

getSize() - Method in class loci.poi.hpsf.MutableSection

Returns the section's size.

getSize() - Method in class loci.poi.hpsf.Property

Returns the property's size in bytes.

getSize() - Method in class loci.poi.hpsf.Section

Returns the section's size in bytes.

getSize() - Method in class loci.poi.hssf.model.Sheet

getSize() - Method in class loci.poi.hssf.model.Workbook

getSize() - Method in interface loci.poi.hssf.record.CustomField

getSize() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg

getSize() - Method in class loci.poi.hssf.record.formula.AddPtg

getSize() - Method in class loci.poi.hssf.record.formula.Area3DPtg

getSize() - Method in class loci.poi.hssf.record.formula.AreaPtg

getSize() - Method in class loci.poi.hssf.record.formula.ArrayPtg

This size includes the size of the array Ptg plus the Array Ptg Token value size

getSize() - Method in class loci.poi.hssf.record.formula.AttrPtg

getSize() - Method in class loci.poi.hssf.record.formula.BoolPtg

getSize() - Method in class loci.poi.hssf.record.formula.ConcatPtg

getSize() - Method in class loci.poi.hssf.record.formula.DividePtg

getSize() - Method in class loci.poi.hssf.record.formula.EqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.ErrPtg

getSize() - Method in class loci.poi.hssf.record.formula.ExpPtg

getSize() - Method in class loci.poi.hssf.record.formula.FuncPtg

getSize() - Method in class loci.poi.hssf.record.formula.FuncVarPtg

getSize() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the size of the sid

getSize() - Method in class loci.poi.hssf.record.formula.IntersectionPtg

getSize() - Method in class loci.poi.hssf.record.formula.IntPtg

getSize() - Method in class loci.poi.hssf.record.formula.LessEqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the size of the sid

getSize() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getSize() - Method in class loci.poi.hssf.record.formula.MemFuncPtg

getSize() - Method in class loci.poi.hssf.record.formula.MissingArgPtg

getSize() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getSize() - Method in class loci.poi.hssf.record.formula.NamePtg

getSize() - Method in class loci.poi.hssf.record.formula.NameXPtg

getSize() - Method in class loci.poi.hssf.record.formula.NotEqualPtg

getSize() - Method in class loci.poi.hssf.record.formula.NumberPtg

getSize() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg

getSize() - Method in class loci.poi.hssf.record.formula.PercentPtg

getSize() - Method in class loci.poi.hssf.record.formula.PowerPtg

getSize() - Method in class loci.poi.hssf.record.formula.Ptg

getSize() - Method in class loci.poi.hssf.record.formula.RangePtg

getSize() - Method in class loci.poi.hssf.record.formula.Ref3DPtg

getSize() - Method in class loci.poi.hssf.record.formula.ReferencePtg

getSize() - Method in class loci.poi.hssf.record.formula.RefErrorPtg

getSize() - Method in class loci.poi.hssf.record.formula.StringPtg

getSize() - Method in class loci.poi.hssf.record.formula.SubtractPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnionPtg

getSize() - Method in class loci.poi.hssf.record.formula.UnknownPtg

getSize() - Method in class loci.poi.hssf.record.LinkedDataFormulaField

getSize() - Method in interface loci.poi.poifs.filesystem.DocumentEntry

get the zize of the document, in bytes

getSize() - Method in class loci.poi.poifs.filesystem.DocumentNode

get the zize of the document, in bytes

getSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument

getSize() - Method in class loci.poi.poifs.property.Property

find out the document size

getSize() - Method in enum ome.jxr.ifd.IFDEntryType

getSize() - Method in class ome.xml.model.BinaryFile

getSizeC() - Method in class loci.formats.ChannelFiller

getSizeC() - Method in class loci.formats.DimensionSwapper

getSizeC() - Method in class loci.formats.FileStitcher

getSizeC() - Method in class loci.formats.FormatReader

getSizeC() - Method in interface loci.formats.IFormatReader

Gets the size of the C dimension.

getSizeC() - Method in class loci.formats.ImageReader

getSizeC() - Method in class loci.formats.in.FilePatternReader

getSizeC() - Method in class loci.formats.ReaderWrapper

getSizeC() - Method in interface loci.formats.services.WlzService

Gets number of channels.

getSizeC() - Method in class loci.formats.services.WlzServiceImpl

getSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeC() - Method in class loci.tests.testng.Configuration

getSizeC() - Method in class ome.xml.model.Pixels

getSizeEMU() - Method in class loci.poi.ddf.EscherMetafileBlip

getSizeEMU() - Method in class loci.poi.ddf.EscherPictBlip

getSizeOfElements() - Method in class loci.poi.ddf.EscherArrayProperty

getSizeOfType(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the number of bytes used to store a value of the given data type.

getSizeT() - Method in class loci.formats.DimensionSwapper

getSizeT() - Method in class loci.formats.FileStitcher

getSizeT() - Method in class loci.formats.FormatReader

getSizeT() - Method in interface loci.formats.IFormatReader

Gets the size of the T dimension.

getSizeT() - Method in class loci.formats.ImageReader

getSizeT() - Method in class loci.formats.in.FilePatternReader

getSizeT() - Method in class loci.formats.ReaderWrapper

getSizeT() - Method in interface loci.formats.services.WlzService

Gets number of time samples.

getSizeT() - Method in class loci.formats.services.WlzServiceImpl

getSizeT(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeT() - Method in class loci.tests.testng.Configuration

getSizeT() - Method in class ome.xml.model.Pixels

getSizeX() - Method in class loci.formats.DimensionSwapper

getSizeX() - Method in class loci.formats.FileStitcher

getSizeX() - Method in class loci.formats.FormatReader

getSizeX() - Method in interface loci.formats.IFormatReader

Gets the size of the X dimension.

getSizeX() - Method in class loci.formats.ImageReader

getSizeX() - Method in class loci.formats.in.FilePatternReader

getSizeX() - Method in class loci.formats.ReaderWrapper

getSizeX() - Method in interface loci.formats.services.WlzService

Gets width in pixels/voxels.

getSizeX() - Method in class loci.formats.services.WlzServiceImpl

getSizeX() - Method in class loci.formats.TileStitcher

getSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeX() - Method in class loci.tests.testng.Configuration

getSizeX() - Method in class ome.xml.model.Pixels

getSizeY() - Method in class loci.formats.DimensionSwapper

getSizeY() - Method in class loci.formats.FileStitcher

getSizeY() - Method in class loci.formats.FormatReader

getSizeY() - Method in interface loci.formats.IFormatReader

Gets the size of the Y dimension.

getSizeY() - Method in class loci.formats.ImageReader

getSizeY() - Method in class loci.formats.in.FilePatternReader

getSizeY() - Method in class loci.formats.ReaderWrapper

getSizeY() - Method in interface loci.formats.services.WlzService

Gets height in pixels/voxels.

getSizeY() - Method in class loci.formats.services.WlzServiceImpl

getSizeY() - Method in class loci.formats.TileStitcher

getSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeY() - Method in class loci.tests.testng.Configuration

getSizeY() - Method in class ome.xml.model.Pixels

getSizeZ() - Method in class loci.formats.DimensionSwapper

getSizeZ() - Method in class loci.formats.FileStitcher

getSizeZ() - Method in class loci.formats.FormatReader

getSizeZ() - Method in interface loci.formats.IFormatReader

Gets the size of the Z dimension.

getSizeZ() - Method in class loci.formats.ImageReader

getSizeZ() - Method in class loci.formats.in.FilePatternReader

getSizeZ() - Method in class loci.formats.ReaderWrapper

getSizeZ() - Method in interface loci.formats.services.WlzService

Gets depth (number of x-y planes) in voxels.

getSizeZ() - Method in class loci.formats.services.WlzServiceImpl

getSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions

getSizeZ() - Method in class loci.tests.testng.Configuration

getSizeZ() - Method in class ome.xml.model.Pixels

getslice(int) - Method in class loci.formats.in.ZeissTIFFReader

getSlideCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the slide count or 0 if the DocumentSummaryInformation does not contain a slide count.

getSlopeFromSIndex(int) - Static method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Returns the minimum slope value associated with a summary table index.

getSmallBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

return the array of SmallDocumentBlocks used

getSmallDocumentBlocks(RawDataBlockList, RootProperty, int) - Static method in class loci.poi.poifs.storage.SmallBlockTableReader

fetch the small document block list from an existing file

getSnapshotPixels() - Method in class loci.plugins.util.RecordedImageProcessor

getSoftwareNameVersion() - Method in class ome.jxr.ifd.IFDMetadata

getSOP() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets SOP.

getSOP() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets SOP

getSort() - Method in class mdbtools.dbengine.sql.OrderBy

getSource() - Method in class loci.formats.cache.Cache

Gets the cache's caching source.

getSource() - Method in class loci.formats.cache.CacheEvent

Gets the source of the cache update.

getSources() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

getSources() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage

getSpacing() - Method in class loci.poi.hssf.record.LegendRecord

Get the spacing field for the Legend record.

getSpContainer() - Method in class loci.poi.hssf.model.AbstractShape

getSpContainer() - Method in class loci.poi.hssf.model.LineShape

getSpContainer() - Method in class loci.poi.hssf.model.PictureShape

getSpContainer() - Method in class loci.poi.hssf.model.PolygonShape

getSpContainer() - Method in class loci.poi.hssf.model.SimpleFilledShape

getSpContainer() - Method in class loci.poi.hssf.model.TextboxShape

getSpec(int, int) - Method in class jj2000.j2k.ModuleSpec

Gets value of specified tile-component without knowing if a specific tile-component value has been previously entered.

getSpecificationTitle() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return the Specification Title string for the package.

getSpecificBuiltinRecord(byte, int) - Method in class loci.poi.hssf.model.Workbook

Retrieves the Builtin NameRecord that matches the name and index There shouldn't be too many names to make the sequential search too slow

getSpecified() - Method in class jj2000.j2k.roi.MaxShiftSpec

getSpecified() - Method in class jj2000.j2k.StringSpec

getSpecifyRangesInfo() - Method in class loci.plugins.in.ImporterOptions

getSpectra() - Method in class loci.formats.in.IM3Reader

If a Nuance file is a spectral library set (.csl) file, there is a spectral library inside that contains a profile of spectral bin magnitudes for each of several measured fluorophores (or auto fluorescence).

getSpecValType(int, int) - Method in class jj2000.j2k.ModuleSpec

Return the spec type of the given tile-component.

getSpeeds() - Method in class loci.formats.in.ND2Handler

getSplitChannelsInfo() - Method in class loci.plugins.in.ImporterOptions

getSplitFocalPlanesInfo() - Method in class loci.plugins.in.ImporterOptions

getSplitTimepointsInfo() - Method in class loci.plugins.in.ImporterOptions

getSPWIndexes(int) - Method in class loci.formats.in.ScreenReader

getSrcColor(int, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder

getSSTIndex() - Method in class loci.poi.hssf.record.LabelSSTRecord

get the index to the string in the SSTRecord

getSSTString(int) - Method in class loci.poi.hssf.model.Workbook

given an index into the SST table, this function returns the corresponding String value

getSSTString(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.

Do not call this method from your applications. Use the methods available in the HSSFRow to get string HSSFCells

getStackFormat() - Method in class loci.plugins.in.ImporterOptions

getStackFormatInfo() - Method in class loci.plugins.in.ImporterOptions

getStackFormats() - Method in class loci.plugins.in.ImporterOptions

getStackOrder() - Method in class loci.plugins.in.ImporterOptions

getStackOrder() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getStackOrderInfo() - Method in class loci.plugins.in.ImporterOptions

getStackOrders() - Method in class loci.plugins.in.ImporterOptions

getStackTrace(Throwable) - Static method in class loci.common.DebugTools

Extracts the given exception's corresponding stack trace to a string.

getStackType(String) - Method in class loci.formats.in.CellSensReader

getStageLabel() - Method in class loci.formats.in.MetamorphHandler

getStageLabel() - Method in class ome.xml.model.Image

getStageLabelName(int) - Method in class ome.xml.meta.AggregateMetadata

getStageLabelName(int) - Method in class ome.xml.meta.DummyMetadata

getStageLabelName(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Name property of StageLabel.

getStageLabelName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getStageLabelX(int) - Method in class ome.xml.meta.AggregateMetadata

getStageLabelX(int) - Method in class ome.xml.meta.DummyMetadata

getStageLabelX(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the X property of StageLabel.

getStageLabelX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getStageLabelY(int) - Method in class ome.xml.meta.AggregateMetadata

getStageLabelY(int) - Method in class ome.xml.meta.DummyMetadata

getStageLabelY(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Y property of StageLabel.

getStageLabelY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getStageLabelZ(int) - Method in class ome.xml.meta.AggregateMetadata

getStageLabelZ(int) - Method in class ome.xml.meta.DummyMetadata

getStageLabelZ(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Z property of StageLabel.

getStageLabelZ(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getStagePositionX() - Method in class loci.formats.in.MetamorphHandler

getStagePositionY() - Method in class loci.formats.in.MetamorphHandler

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata

getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata

getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

getStartBlock() - Method in class loci.poi.poifs.property.Property

getStartBlock() - Method in class loci.poi.poifs.property.PropertyTable

Get the start block for the property table

getStartBlock() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

get the starting block

getStartLevelROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets startLevel

getStartPos() - Method in class com.sun.media.imageio.stream.StreamSegment

Returns the starting position of the segment.

getStartRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the physical row number of the first row in a block

getStartTime() - Method in class ome.xml.model.PlateAcquisition

getStatistics(int, int, double, double) - Method in class loci.plugins.util.VirtualImagePlus

getStatus() - Method in class ome.xml.model.Plate

getStatusBarLength() - Method in class loci.poi.hssf.record.NameRecord

get the status bar text length

getStatusBarText() - Method in class loci.poi.hssf.record.NameRecord

gets the status bar text

getStatusMessage() - Method in class loci.common.StatusEvent

Gets status message.

getStep() - Method in class loci.formats.FilePattern

getStep() - Method in class loci.formats.FilePatternBlock

getStep(int) - Static method in enum loci.plugins.in.ImportStep

getStep() - Method in enum loci.plugins.in.ImportStep

getStepSize(Hashtable<String, Object>) - Method in class loci.formats.in.MINCReader

getStitchTilesInfo() - Method in class loci.plugins.in.ImporterOptions

getStorageClsid() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

Gets the storage clsid of the directory entry

getStorageClsid() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Gets the storage clsid of the directory entry

getStorageClsid() - Method in class loci.poi.poifs.property.Property

Sets the storage clsid, which is the Class ID of a COM object which reads and writes this stream

getStr() - Method in class loci.poi.hssf.record.TextObjectRecord

getStrategy() - Method in class loci.formats.cache.Cache

Gets the cache's caching strategy.

getStream() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the ImageOutputStream that will be written.

getStream(int) - Method in class loci.formats.in.VolocityReader

getStream() - Method in class loci.formats.in.ZeissCZIReader.Segment

getStream() - Method in class loci.formats.tiff.OnDemandLongArray

getStream() - Method in class loci.formats.tiff.TiffParser

Gets the stream from which TIFF data is being parsed.

getStream() - Method in class loci.formats.tiff.TiffSaver

Gets the stream from which TIFF data is being saved.

getStream() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent

getStream() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent

getStreamId() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Gets the stream ID containing the actual data.

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getStreamMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

getStreamPos() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord

getStreamPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream

getStreams() - Method in class loci.formats.tools.AmiraParameters

getStreamSegment(long, int) - Method in class com.sun.media.imageio.stream.SectorStreamSegmentMapper

getStreamSegment(long, int, StreamSegment) - Method in class com.sun.media.imageio.stream.SectorStreamSegmentMapper

getStreamSegment(long, int) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper

Returns a StreamSegment object indicating the location of the initial portion of a desired segment in the source stream.

getStreamSegment(long, int, StreamSegment) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper

Sets the values of a StreamSegment object indicating the location of the initial portion of a desired segment in the source stream.

getStreamSegment(long, int) - Method in class com.sun.media.imageio.stream.StreamSegmentMapperImpl

getStreamSegment(long, int, StreamSegment) - Method in class com.sun.media.imageio.stream.StreamSegmentMapperImpl

getStrikeout() - Method in class loci.poi.hssf.usermodel.HSSFFont

get whether to use a strikeout horizontal line through the text or not

getString(String) - Static method in class com.sun.media.imageio.plugins.bmp.I18N

getString(String) - Static method in class com.sun.media.imageio.stream.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.common.I18N

getString(String, String) - Static method in class com.sun.media.imageioimpl.common.I18NImpl

Returns the message string with the specified key from the "properties" file in the package containing the class with the specified name.

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.bmp.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.clib.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.png.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.pnm.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.raw.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.I18N

getString(String) - Static method in class com.sun.media.imageioimpl.plugins.wbmp.I18N

getString(String) - Static method in class com.sun.media.jai.imageioimpl.I18N

getString(String) - Static method in class com.sun.media.jai.operator.I18N

getString(int) - Method in class loci.formats.in.LeicaReader

getString(boolean) - Method in class loci.formats.in.LeicaReader

getString(Integer) - Method in class loci.formats.in.VolocityReader

getString(int) - Method in class loci.poi.hssf.record.SSTRecord

Get a particular string by its index

getString() - Method in class loci.poi.hssf.record.StringRecord

getString() - Method in class loci.poi.hssf.record.UnicodeString

get the actual string this contains as a java String object

getString() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Returns the plain string representation.

getString() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

getStringAttribute(Node, String, String, boolean, String[]) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata

getStringByteLength() - Method in class loci.poi.hssf.record.StringRecord

getStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.

Use the HSSFRichTextString return

getStringElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its String value from an IIOMetadataNode.

getStringLength() - Method in class loci.poi.hssf.record.formula.MultiplyPtg

getStringLength() - Method in class loci.poi.hssf.record.LabelRecord

get the number of characters this string contains

getStringOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the string option with the given key.

getStringRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getStrings() - Method in class loci.poi.hssf.record.SSTRecord

getStringValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata

getStringValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock

getStringValue() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

getStringWidth(String) - Method in class loci.plugins.util.RecordedImageProcessor

getStringWidth(String) - Method in class loci.poi.hssf.usermodel.FontDetails

Gets the width of all characters in a string.

getStripByteCounts() - Method in class loci.formats.tiff.IFD

Retrieves strip byte counts for the image (TIFF tag StripByteCounts) from this IFD.

getStripOffsets() - Method in class loci.formats.tiff.IFD

Retrieves the strip offsets for the image (TIFF tag StripOffsets) from this IFD.

getStripOrTileByteCountsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getStripOrTileOffsetsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getStroke() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d

getStroke() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

getStrokeColor() - Method in class ome.xml.model.Shape

getStrokeDashArray() - Method in class ome.xml.model.Shape

getStrokeWidth() - Method in class ome.xml.model.Shape

getStrokeWidthUnitXsdDefault() - Static method in class ome.xml.model.Shape

getStructuredAnnotations() - Method in class ome.xml.model.BooleanAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.CommentAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.DoubleAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.FileAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.ListAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.LongAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.MapAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.OME

getStructuredAnnotations() - Method in class ome.xml.model.TagAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.TermAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.TimestampAnnotation

getStructuredAnnotations() - Method in class ome.xml.model.XMLAnnotation

getStylesheet(String, Class<?>) - Static method in class loci.common.xml.XMLTools

Gets an XSLT template from the given resource location.

getSubband(int, int) - Method in class jj2000.j2k.wavelet.Subband

Returns a reference to the Subband element to which the specified point belongs.

getSubbandByIdx(int, int) - Method in class jj2000.j2k.wavelet.Subband

Returns a subband element in the tree, given its resolution level and subband index.

getSubbandRectROIMask(int, int) - Method in class jj2000.j2k.roi.encoder.SubbandROIMask

Returns a reference to the Subband mask element to which the specified point belongs.

getSubexpressionLength() - Method in class loci.poi.hssf.record.formula.MemAreaPtg

getSubimage(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Returns a subimage of the specified image.

getSubimage(byte[], byte[], int, int, int, int, int, int, int, int, boolean) - Static method in class loci.formats.ImageTools

getSubject() - Method in class loci.poi.hpsf.SummaryInformation

Returns the subject (or null).

getSubRecords() - Method in class loci.poi.hssf.record.ObjRecord

getSubsamp() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor

Returns the level of chrominance subsampling used in the JPEG image associated with this decompressor instance.

getSuffix() - Method in class loci.formats.FilePattern

Gets the pattern's text string after all numerical ranges.

getSuffixes() - Method in class loci.formats.FormatHandler

getSuffixes() - Method in interface loci.formats.IFormatHandler

Gets the default file suffixes for this file format.

getSuffixes() - Method in class loci.formats.ImageReader

getSuffixes() - Method in class loci.formats.ImageWriter

getSuffixes() - Method in class loci.formats.ReaderWrapper

getSuffixes() - Method in class loci.formats.WriterWrapper

getSummaryInformation() - Method in class loci.poi.POIDocument

Fetch the Summary Information of the document

getSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

getSupbookpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the supbookpos.

getSuperSubScript() - Method in class loci.poi.hssf.record.FontRecord

get the type of super or subscript for the font

getSupPixelTypes() - Method in interface loci.formats.services.WlzService

Gets supported pixel types.

getSupPixelTypes() - Method in class loci.formats.services.WlzServiceImpl

getSupportedMetadataLevels() - Method in class loci.formats.DelegateReader

getSupportedMetadataLevels() - Method in class loci.formats.FormatReader

getSupportedMetadataLevels() - Method in class loci.formats.ImageReader

getSupportedMetadataLevels() - Method in interface loci.formats.IMetadataConfigurable

getSupportedMetadataLevels() - Method in class loci.formats.ReaderWrapper

getSwapDimensionsInfo() - Method in class loci.plugins.in.ImporterOptions

getSymbol() - Method in class ome.units.unit.Unit

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the high-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the low-pass synthesis filter.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the specified synthesis subband tree

getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the specified synthesis subband tree

getT() - Method in class loci.formats.gui.ImageViewer

Gets the T value of the currently displayed image.

getTabIdArray() - Method in class loci.poi.hssf.record.TabIdRecord

get the tab array.

getTable(String) - Method in class loci.common.IniList

Gets the table with the given name (header).

getTable(int) - Method in interface mdbtools.dbengine.DataSource

getTable() - Method in class mdbtools.dbengine.sql.FQColumn

getTable(int) - Method in class mdbtools.dbengine.sql.Select

getTable(int) - Method in class mdbtools.dbengine.Tests.SimpleDataSource

getTableCount() - Method in interface loci.formats.services.MetakitService

getTableCount() - Method in class loci.formats.services.MetakitServiceImpl

getTableCount() - Method in interface mdbtools.dbengine.DataSource

getTableCount() - Method in class mdbtools.dbengine.sql.Select

getTableCount() - Method in class mdbtools.dbengine.Tests.SimpleDataSource

getTableCount() - Method in class ome.metakit.MetakitReader

Retrieve the number of tables in this database file.

getTableData(String) - Method in interface loci.formats.services.MetakitService

getTableData(int) - Method in interface loci.formats.services.MetakitService

getTableData(String) - Method in class loci.formats.services.MetakitServiceImpl

getTableData(int) - Method in class loci.formats.services.MetakitServiceImpl

getTableData(int) - Method in class ome.metakit.MetakitReader

Retrieve all of the tabular data for the table with the given index.

getTableData(String) - Method in class ome.metakit.MetakitReader

Retrieve all of the tabular data for the named table.

getTableNames() - Method in interface loci.formats.services.MetakitService

getTableNames() - Method in class loci.formats.services.MetakitServiceImpl

getTableNames() - Method in class ome.metakit.MetakitReader

Retrieve the name of every table in this database file.

getTabpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

getTabWidthRatio() - Method in class loci.poi.hssf.record.WindowOneRecord

ratio of the width of the tabs to the horizontal scrollbar

getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the TIFFTag which has tag number equal to tagNumber or null if no such tag exists in the TIFFTagSets associated with this directory.

getTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Retrieves the tag associated with this field.

getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Returns the TIFFTag from this set that is associated with the given tag number, or null if no tag exists for that number.

getTag(String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Returns the TIFFTag having the given tag name, or null if the named tag does not belong to this tag set.

getTag(int, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getTag(String, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getTag() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's Tag value.

getTag() - Method in class loci.poi.ddf.EscherBSERecord

unused

getTag() - Method in enum ome.jxr.ifd.IFDEntry

getTagAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getTagAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a TagAnnotation.

getTagAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of TagAnnotation.

getTagAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of TagAnnotation.

getTagAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of TagAnnotation elements.

getTagAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of TagAnnotation.

getTagAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of TagAnnotation.

getTagAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of TagAnnotation.

getTagAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getTagAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getTagAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of TagAnnotation.

getTagAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTagName(int) - Method in class loci.formats.in.CellSensReader

getTagNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Retrieves an unmodifiable lexicographically increasing set of tag names.

getTagNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Retrieves the tag number in the range [0, 65535].

getTagNumbers() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Retrieves an unmodifiable numerically increasing set of tag numbers.

getTags() - Method in interface loci.formats.services.EXIFService

getTags() - Method in class loci.formats.services.EXIFServiceImpl

getTagSet() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the TIFFTagSet of which this tag is a part.

getTagSetList() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

getTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the TIFFTagSets of which this directory is aware.

getTargetBitrate(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the target bitrate of the optmimization point 'n'.

getTargetNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the target number of read bytes.

getTargetRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the target decoding rate in bits per pixel.

getTBegin(int) - Method in class loci.plugins.in.ImporterOptions

getTBegin(int) - Method in class loci.plugins.in.ImportProcess

getTCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getTemperature() - Method in class loci.formats.in.MetamorphHandler

getTemperature() - Method in class ome.xml.model.ImagingEnvironment

getTemperatures() - Method in class loci.formats.in.ND2Handler

getTemperatureUnitXsdDefault() - Static method in class ome.xml.model.ImagingEnvironment

getTemplate() - Method in class loci.poi.hpsf.SummaryInformation

Returns the template (or null).

getTEnd(int) - Method in class loci.plugins.in.ImporterOptions

getTEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getTermAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations

getTermAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of links to a TermAnnotation.

getTermAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the AnnotationRef property of TermAnnotation.

getTermAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Annotator property of TermAnnotation.

getTermAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationCount() - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of TermAnnotation elements.

getTermAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Description property of TermAnnotation.

getTermAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the ID property of TermAnnotation.

getTermAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Namespace property of TermAnnotation.

getTermAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTermAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata

getTermAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata

getTermAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the Value property of TermAnnotation.

getTermAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTerminateOnByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets terminateOnByte

getTestImageReader() - Static method in class loci.tests.testng.TestTools

Return an ImageReader that is appropriate for testing.

getText() - Method in class loci.poi.hssf.extractor.ExcelExtractor

Retreives the text contents of the file

getText() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the text field for the SeriesText record.

getText() - Method in class loci.poi.POITextExtractor

Retrieves all the text from the document.

getText() - Method in class ome.xml.model.Shape

getTextFooter() - Static method in class loci.formats.tools.PrintFormatTable

getTextFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getTextHeader() - Static method in class loci.formats.tools.PrintFormatTable

getTextLength() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the text length field for the SeriesText record.

getTextLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the text length field for the TextObjectBase record.

getTextObjectRecord() - Method in class loci.poi.hssf.model.TextboxShape

getTextOrientation() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the text orientation field for the TextObjectBase record.

getTextRotation() - Method in class loci.poi.hssf.record.TextRecord

Get the text rotation field for the Text record.

getTextsLength() - Method in class loci.poi.hssf.record.NameRecord

gets the length of all texts

getTFrames(int) - Method in class loci.formats.in.LegacyND2Reader

getTheC() - Method in class ome.xml.model.Plane

getTheC() - Method in class ome.xml.model.Shape

getTheT() - Method in class ome.xml.model.Plane

getTheT() - Method in class ome.xml.model.Shape

getTheZ() - Method in class ome.xml.model.Plane

getTheZ() - Method in class ome.xml.model.Shape

getThreadConcurrency() - Static method in class jj2000.j2k.util.NativeServices

Returns the current concurrency level.

getThreadConcurrencyN() - Static method in class jj2000.j2k.util.NativeServices

Calls the POSIX threads 'pthread_getconcurrency', or equivalent, function and return the result.

getThumbnail() - Method in class loci.poi.hpsf.SummaryInformation

Returns the thumbnail (or null) when this method is implemented.

getThumbnail() - Method in class loci.poi.hpsf.Thumbnail

Returns the thumbnail as a byte[] in VT_CF format.

getThumbnailAsWMF() - Method in class loci.poi.hpsf.Thumbnail

Returns the Thumbnail as a byte[] of WMF data if the Thumbnail's Clipboard Format Tag is CFTAG_WINDOWS and its Clipboard Format is CF_METAFILEPICT

getThumbnailIFDs() - Method in class loci.formats.in.MinimalTiffReader

Gets the list of IFDs associated with the current TIFF's thumbnails.

getThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser

Returns thumbnail IFDs.

getThumbSizeX() - Method in class loci.formats.FileStitcher

getThumbSizeX() - Method in class loci.formats.FormatReader

getThumbSizeX() - Method in interface loci.formats.IFormatReader

Get the size of the X dimension for the thumbnail.

getThumbSizeX() - Method in class loci.formats.ImageReader

getThumbSizeX() - Method in class loci.formats.in.FilePatternReader

getThumbSizeX() - Method in class loci.formats.in.LeicaSCNReader

getThumbSizeX() - Method in class loci.formats.in.MinimalTiffReader

getThumbSizeX() - Method in class loci.formats.ReaderWrapper

getThumbSizeX() - Method in class loci.tests.testng.Configuration

getThumbSizeY() - Method in class loci.formats.FileStitcher

getThumbSizeY() - Method in class loci.formats.FormatReader

getThumbSizeY() - Method in interface loci.formats.IFormatReader

Get the size of the Y dimension for the thumbnail.

getThumbSizeY() - Method in class loci.formats.ImageReader

getThumbSizeY() - Method in class loci.formats.in.FilePatternReader

getThumbSizeY() - Method in class loci.formats.in.LeicaSCNReader

getThumbSizeY() - Method in class loci.formats.in.MinimalTiffReader

getThumbSizeY() - Method in class loci.formats.ReaderWrapper

getThumbSizeY() - Method in class loci.tests.testng.Configuration

getTickColor() - Method in class loci.poi.hssf.record.TickRecord

Get the tick color field for the Tick record.

getTickMarkFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the tick mark frequency field for the CategorySeriesAxis record.

getTIFFCompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the TIFFCompressor that is currently set to be used by the ImageWriter to encode each image strip or tile, or null if none has been set.

getTiffData(int) - Method in class ome.xml.model.Pixels

getTiffDataCount(int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataCount(int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataCount(int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the number of TiffData elements.

getTiffDataCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataFirstC(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataFirstC(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataFirstC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FirstC property of TiffData.

getTiffDataFirstC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataFirstT(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataFirstT(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataFirstT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FirstT property of TiffData.

getTiffDataFirstT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataFirstZ(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataFirstZ(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataFirstZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the FirstZ property of TiffData.

getTiffDataFirstZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataIFD(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataIFD(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataIFD(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the IFD property of TiffData.

getTiffDataIFD(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTiffDataPlaneCount(int, int) - Method in class ome.xml.meta.AggregateMetadata

getTiffDataPlaneCount(int, int) - Method in class ome.xml.meta.DummyMetadata

getTiffDataPlaneCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve

Get the PlaneCount property of TiffData.

getTiffDataPlaneCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl

getTIFFDecompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns the TIFFDecompressor that is currently set to be used by the ImageReader to decode each image strip or tile, or null if none has been set.