Package | Description |
---|---|
ome.api |
Contains the central verbs of the Omero System.
|
ome.model.annotations | |
ome.model.containers | |
ome.model.core | |
ome.model.fs | |
ome.model.roi | |
ome.model.screen | |
ome.services.delete |
Implementations of the ome.api.IDelete service.
|
ome.services.fulltext.bridges |
Custom FieldBridge implementations which can be configured to be run on each
indexing activity.
|
ome.tools |
OMERO Server Utility and Spring/Hibernate Tools
Classes/Interfaces that implement File, Hibernate, Spring, Annotation, Hierarchy, etc. method
mechanics for the OMERO server
Related Documentation
For more information, please see:
TODO
|
Modifier and Type | Method and Description |
---|---|
<T extends IObject> |
IContainer.getImages(Class<T> rootNodeType,
Set<Long> rootNodeIds,
Parameters options)
Retrieve a user's (or all users') images within any given container.
|
Set<Image> |
IContainer.getImagesByOptions(Parameters options)
Retrieve images by options.
|
Set<Image> |
IAnalysis.getImagesForDataset(long datasetId) |
Set<Image> |
IContainer.getUserImages(Parameters options)
Retrieve a user's images.
|
Modifier and Type | Method and Description |
---|---|
Image |
ImageAnnotationLink.parent() |
Modifier and Type | Method and Description |
---|---|
void |
ImageAnnotationLink.link(Image parent,
Annotation child) |
Modifier and Type | Method and Description |
---|---|
Image |
DatasetImageLink.child() |
Image |
FolderImageLink.child() |
Modifier and Type | Method and Description |
---|---|
Iterator<Image> |
Dataset.linkedImageIterator()
provides an iterator over the parent values of the imageLinks.
|
Iterator<Image> |
Folder.linkedImageIterator()
provides an iterator over the parent values of the imageLinks.
|
List<Image> |
Dataset.linkedImageList()
produces a
List -copy of the underlying collection. |
List<Image> |
Folder.linkedImageList()
produces a
List -copy of the underlying collection. |
Modifier and Type | Method and Description |
---|---|
Set<DatasetImageLink> |
Dataset.findDatasetImageLink(Image target)
find all ome.model.containers.DatasetImageLink which have the argument as their child.
|
Set<FolderImageLink> |
Folder.findFolderImageLink(Image target)
find all ome.model.containers.FolderImageLink which have the argument as their child.
|
void |
DatasetImageLink.link(Dataset parent,
Image child) |
void |
FolderImageLink.link(Folder parent,
Image child) |
DatasetImageLink |
Dataset.linkImage(Image addition)
Adds a ome.model.containers.DatasetImageLink to imageLinks .
|
FolderImageLink |
Folder.linkImage(Image addition)
Adds a ome.model.containers.FolderImageLink to imageLinks .
|
void |
Dataset.unlinkImage(Image removal)
unlinks all ome.model.core.Image instances from this instance.
|
void |
Folder.unlinkImage(Image removal)
unlinks all ome.model.core.Image instances from this instance.
|
Modifier and Type | Field and Description |
---|---|
protected Image |
Pixels.image |
Modifier and Type | Method and Description |
---|---|
Image |
Pixels.getImage()
Many-to-one field ome.model.core.Pixels.image (ome.model.core.Image)
|
Image |
Image.newInstance() |
Image |
Image.proxy() |
Modifier and Type | Method and Description |
---|---|
void |
Pixels.setImage(Image image) |
Constructor and Description |
---|
Pixels(Image _image,
PixelsType _pixelsType,
Integer _sizeX,
Integer _sizeY,
Integer _sizeZ,
Integer _sizeC,
Integer _sizeT,
String _sha1,
DimensionOrder _dimensionOrder) |
Modifier and Type | Field and Description |
---|---|
protected Set<Image> |
Fileset.images |
Modifier and Type | Method and Description |
---|---|
protected Set<Image> |
Fileset.getImages()
returns images .
|
Iterator<Image> |
Fileset.iterateImages()
should be used rather than accessing the images set directly.
|
Collection<Image> |
Fileset.unmodifiableImages()
Returns an unmodifiable collection-view
|
Modifier and Type | Method and Description |
---|---|
void |
Fileset.addImage(Image target)
use instead of setImages .
|
void |
Fileset.removeImage(Image target)
removes a single element from this set and makes the inverse call on ome.model.core.Image
|
Modifier and Type | Method and Description |
---|---|
void |
Fileset.addImageSet(Collection<Image> targets)
use like addImage.
|
void |
Fileset.removeImageSet(Collection<Image> targets)
use like removeImage
|
protected void |
Fileset.setImages(Set<Image> images)
setter for images should be avoided.
|
Modifier and Type | Field and Description |
---|---|
protected Image |
Roi.image |
Modifier and Type | Method and Description |
---|---|
Image |
Roi.getImage()
Many-to-one field ome.model.roi.Roi.image (ome.model.core.Image)
|
Modifier and Type | Method and Description |
---|---|
void |
Roi.setImage(Image image) |
Modifier and Type | Field and Description |
---|---|
protected Image |
WellSample.image |
Modifier and Type | Method and Description |
---|---|
Image |
WellSample.getImage()
Many-to-one field ome.model.screen.WellSample.image (ome.model.core.Image)
|
Modifier and Type | Method and Description |
---|---|
void |
WellSample.setImage(Image image) |
Constructor and Description |
---|
WellSample(Well _well,
Image _image) |
Modifier and Type | Method and Description |
---|---|
protected void |
DeleteBean.collect(ome.services.delete.UnloadedCollector delete,
Image i)
Walks the
Image graph collecting unloaded instances of all
entities for later delete. |
protected void |
DeleteBean.getImageAndCount(Image[] images,
long id,
ome.services.delete.UnloadedCollector delete)
Uses the locally defined query to load an
Image and calls
DeleteBean.collect(UnloadedCollector, Image) in order to define a list of
what will be deleted. |
Modifier and Type | Method and Description |
---|---|
protected void |
TablesBridge.handleImage(Image image,
org.apache.lucene.document.Document document,
org.hibernate.search.bridge.LuceneOptions opts)
Deprecated.
Processes any annotations attached to the following types which contain
this image: Plate, Dataset
|
Modifier and Type | Method and Description |
---|---|
static <T extends IObject> |
HierarchyTransformations.invertPDI(Set<Image> imagesAll,
CBlock<T> block) |
Version: 5.3.5-ice35-b73
Copyright © 2017 The University of Dundee & Open Microscopy Environment. All Rights Reserved.