Uses of Class
ome.model.core.OriginalFile

Packages that use OriginalFile

Package	Description
ome.api	Contains the central verbs of the Omero System.
ome.io.nio	New Input/Output handling for the OMERO server This includes interfaces/classes for the input and output handling of data within the OMERO server.
ome.logic	The central repository of implementations which will be accessible through this server.
ome.model.annotations
ome.model.core
ome.model.fs
ome.model.jobs
ome.model.roi
ome.services	Base services package for OMERO API services This includes classes that implement OMERO API services described as interfaces in the OMERO Common component.
ome.services.blitz.repo
ome.services.fulltext	All necessary classes for background indexing of metadata and attached binary files.
ome.services.scripts

Uses of OriginalFile in ome.api

Methods in ome.api that return OriginalFile

Modifier and Type	Method and Description
OriginalFile	RawFileStore.save() Saves the OriginalFile associated with the service if it has been modified.

Methods in ome.api that return types with arguments of type OriginalFile

Modifier and Type	Method and Description
java.util.List<OriginalFile>	IAdmin.getMyUserPhotos() Retrieve the OriginalFile object attached to this user as specified by IAdmin.uploadMyUserPhoto(String, String, byte[]).

Uses of OriginalFile in ome.io.nio

Methods in ome.io.nio with parameters of type OriginalFile

Modifier and Type	Method and Description
boolean	OriginalFilesService.exists(OriginalFile file) Returns whether or not an OriginalFile exists on disk.
FileBuffer	OriginalFilesService.getFileBuffer(OriginalFile file, java.lang.String mode) Returns FileBuffer based on OriginalFile path

Uses of OriginalFile in ome.logic

Methods in ome.logic that return types with arguments of type OriginalFile

Modifier and Type	Method and Description
java.util.List<OriginalFile>	AdminImpl.getMyUserPhotos()

Uses of OriginalFile in ome.model.annotations

Fields in ome.model.annotations declared as OriginalFile

Modifier and Type	Field and Description
protected OriginalFile	FileAnnotation.file

Methods in ome.model.annotations that return OriginalFile

Modifier and Type	Method and Description
OriginalFile	FileAnnotation.getFile() Many-to-one field ome.model.annotations.FileAnnotation.file (ome.model.core.OriginalFile)
OriginalFile	OriginalFileAnnotationLink.parent()

Methods in ome.model.annotations with parameters of type OriginalFile

Modifier and Type	Method and Description
void	OriginalFileAnnotationLink.link(OriginalFile parent, Annotation child)
void	FileAnnotation.setFile(OriginalFile file)

Uses of OriginalFile in ome.model.core

Methods in ome.model.core that return OriginalFile

Modifier and Type	Method and Description
OriginalFile	OriginalFile.newInstance()
OriginalFile	PixelsOriginalFileMap.parent()
OriginalFile	OriginalFile.proxy()

Methods in ome.model.core that return types with arguments of type OriginalFile

Modifier and Type	Method and Description
java.util.Iterator<OriginalFile>	Pixels.linkedOriginalFileIterator() provides an iterator over the child values of the pixelsFileMaps.
java.util.List<OriginalFile>	Pixels.linkedOriginalFileList() produces a List-copy of the underlying collection.

Methods in ome.model.core with parameters of type OriginalFile

Modifier and Type	Method and Description
java.util.Set<PixelsOriginalFileMap>	Pixels.findPixelsOriginalFileMap(OriginalFile target) find all ome.model.core.PixelsOriginalFileMap which have the argument as their parent.
void	PixelsOriginalFileMap.link(OriginalFile parent, Pixels child)
PixelsOriginalFileMap	Pixels.linkOriginalFile(OriginalFile addition) Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps .
void	Pixels.unlinkOriginalFile(OriginalFile removal) unlinks all ome.model.core.OriginalFile instances from this instance.

Uses of OriginalFile in ome.model.fs

Fields in ome.model.fs declared as OriginalFile

Modifier and Type	Field and Description
protected OriginalFile	FilesetEntry.originalFile

Methods in ome.model.fs that return OriginalFile

Modifier and Type	Method and Description
OriginalFile	FilesetEntry.getOriginalFile() Many-to-one field ome.model.fs.FilesetEntry.originalFile (ome.model.core.OriginalFile)

Methods in ome.model.fs with parameters of type OriginalFile

Modifier and Type	Method and Description
void	FilesetEntry.setOriginalFile(OriginalFile originalFile)

Constructors in ome.model.fs with parameters of type OriginalFile

Constructor and Description
FilesetEntry(Fileset _fileset, OriginalFile _originalFile, java.lang.String _clientPath)

Uses of OriginalFile in ome.model.jobs

Methods in ome.model.jobs that return OriginalFile

Modifier and Type	Method and Description
OriginalFile	JobOriginalFileLink.child()

Methods in ome.model.jobs that return types with arguments of type OriginalFile

Modifier and Type	Method and Description
java.util.Iterator<OriginalFile>	Job.linkedOriginalFileIterator() provides an iterator over the parent values of the originalFileLinks.
java.util.List<OriginalFile>	Job.linkedOriginalFileList() produces a List-copy of the underlying collection.

Methods in ome.model.jobs with parameters of type OriginalFile

Modifier and Type	Method and Description
java.util.Set<JobOriginalFileLink>	Job.findJobOriginalFileLink(OriginalFile target) find all ome.model.jobs.JobOriginalFileLink which have the argument as their child.
void	JobOriginalFileLink.link(Job parent, OriginalFile child)
JobOriginalFileLink	Job.linkOriginalFile(OriginalFile addition) Adds a ome.model.jobs.JobOriginalFileLink to originalFileLinks .
void	Job.unlinkOriginalFile(OriginalFile removal) unlinks all ome.model.core.OriginalFile instances from this instance.

Uses of OriginalFile in ome.model.roi

Fields in ome.model.roi declared as OriginalFile

Modifier and Type	Field and Description
protected OriginalFile	Roi.source

Methods in ome.model.roi that return OriginalFile

Modifier and Type	Method and Description
OriginalFile	Roi.getSource() Many-to-one field ome.model.roi.Roi.source (ome.model.core.OriginalFile)

Methods in ome.model.roi with parameters of type OriginalFile

Modifier and Type	Method and Description
void	Roi.setSource(OriginalFile source)

Uses of OriginalFile in ome.services

Methods in ome.services that return OriginalFile

Modifier and Type	Method and Description
OriginalFile	RawFileBean.save()

Uses of OriginalFile in ome.services.blitz.repo

Methods in ome.services.blitz.repo that return OriginalFile

Modifier and Type	Method and Description
OriginalFile	CheckedPath.asOriginalFile(java.lang.String mimetype) Creates an OriginalFile instance for the given CheckedPath even if it doesn't exist.
OriginalFile	RepositoryDao.findRepoFile(ServiceFactory sf, SqlAction sql, java.lang.String uuid, CheckedPath checked, java.lang.String mimetype) As RepositoryDao.findRepoFile(String, CheckedPath, String, Current) but can be called from within a transaction.
OriginalFile	RepositoryDaoImpl.findRepoFile(ServiceFactory sf, SqlAction sql, java.lang.String uuid, CheckedPath checked, java.lang.String mimetype)
OriginalFile	RepositoryDao.getOriginalFileWithHasher(long id, Ice.Current current) Retrieve the original file of the given ID.
OriginalFile	RepositoryDaoImpl.getOriginalFileWithHasher(long id, Ice.Current current)
protected OriginalFile	PublicRepositoryI.persistLogFile(OriginalFile originalFile, Ice.Current current) Deprecated.
OriginalFile	RepositoryDao.register(java.lang.String repoUuid, CheckedPath checked, java.lang.String mimetype, ServiceFactory sf, SqlAction sql, org.hibernate.Session session) Like RepositoryDao.register(String, CheckedPath, String, Ice.Current) but does not create a new transaction.
OriginalFile	RepositoryDaoImpl.register(java.lang.String repoUuid, CheckedPath checked, java.lang.String mimetype, ServiceFactory sf, SqlAction sql, org.hibernate.Session session) Returns original file object is "live" within the Hibernate session.

Methods in ome.services.blitz.repo that return types with arguments of type OriginalFile

Modifier and Type	Method and Description
protected java.util.List<OriginalFile>	RepositoryDaoImpl.createOriginalFile(ServiceFactory sf, SqlAction sql, java.lang.String repoUuid, java.util.List<CheckedPath> checked, omero.model.ChecksumAlgorithm checksumAlgorithm, java.lang.String mimetype, org.hibernate.Session session) Primary location for creating original files from a CheckedPath instance.
protected java.util.List<OriginalFile>	RepositoryDaoImpl.getOriginalFiles(ServiceFactory sf, SqlAction sql, java.lang.String repoUuid, CheckedPath checked)

Methods in ome.services.blitz.repo with parameters of type OriginalFile

Modifier and Type	Method and Description
protected OriginalFile	PublicRepositoryI.persistLogFile(OriginalFile originalFile, Ice.Current current) Deprecated.

Uses of OriginalFile in ome.services.fulltext

Methods in ome.services.fulltext with parameters of type OriginalFile

Modifier and Type	Method and Description
protected void	BridgeHelper.addContents(org.apache.lucene.document.Document d, java.lang.String name, OriginalFile file, OriginalFilesService files, java.util.Map<java.lang.String,FileParser> parsers, org.hibernate.search.bridge.LuceneOptions opts) Deprecated. Second helper method used when parsing files.
protected java.lang.Iterable<java.io.Reader>	BridgeHelper.parse(OriginalFile file, OriginalFilesService files, java.util.Map<java.lang.String,FileParser> parsers) Deprecated. Attempts to parse the given OriginalFile.

Uses of OriginalFile in ome.services.scripts

Methods in ome.services.scripts that return OriginalFile

Modifier and Type	Method and Description
OriginalFile	ScriptRepoHelper.addOrReplace(RepoFile repoFile, java.lang.Long old)
protected OriginalFile	ScriptRepoHelper.addOrReplace(org.hibernate.Session session, SqlAction sqlAction, ServiceFactory sf, RepoFile repoFile, java.lang.Long old)
OriginalFile	ScriptRepoHelper.load(long id, boolean check)
OriginalFile	ScriptRepoHelper.load(long id, org.hibernate.Session s, SqlAction sqlAction, boolean check)
OriginalFile	ScriptRepoHelper.update(RepoFile repoFile, java.lang.Long id, java.util.Map<java.lang.String,java.lang.String> context)

Methods in ome.services.scripts that return types with arguments of type OriginalFile

Modifier and Type	Method and Description
java.util.List<OriginalFile>	ScriptRepoHelper.loadAll(boolean modificationCheck) Walks all files in the repository (via ScriptRepoHelper.iterate() and adds them if not found in the database.
java.util.List<OriginalFile>	ScriptRepoHelper.loadAll(boolean modificationCheck, java.lang.String mimetype) Walks all files in the repository (via ScriptRepoHelper.iterate() and adds them if not found in the database.
java.util.List<OriginalFile>	ScriptRepoHelper.loadAll(boolean modificationCheck, java.lang.String mimetype, Principal pp)
protected java.util.List<OriginalFile>	ScriptFinder.loadScripts(ServiceFactory sf, Parameters p) Load all scripts that match the name, hash, and format for script

Methods in ome.services.scripts with parameters of type OriginalFile

Modifier and Type	Method and Description
boolean	ScriptRepoHelper.isInert(OriginalFile f) Returns true if the file is an "inert" file e.g. a lut, false otherwise.
boolean	ScriptFileType.setMimetype(OriginalFile ofile) Sets the mimetype on the given OriginalFile if the name field matches the wildcard pattern for this instance.
void	ScriptRepoHelper.setMimetype(OriginalFile ofile)

Method parameters in ome.services.scripts with type arguments of type OriginalFile

Modifier and Type	Method and Description
long	ScriptRepoHelper.removeMissingFilesFromDb(SqlAction sqlAction, org.hibernate.Session session, java.util.List<OriginalFile> filesOnDisk) Given the current files on disk, ScriptRepoHelper.unregister(Long, SqlAction) all files which have been removed from disk.