All Classes and Interfaces
Class
Description
Displays a small information dialog about the Bio-Formats Plugins package.
AFIReader is the file format reader for Aperio AFI files.
AIMReader is the file format reader for .aim files.
AliconaReader is the file format reader for Alicona AL3D files.
AmiraParameters handles parsing and writing of AmiraMesh headers.
This is a file format reader for AmiraMesh data.
This is the common interface for all formats, compressed or not.
AnalyzeReader is the file format reader for Analyze 7.5 files.
APLReader is the file format reader for Olympus APL files.
APNGReader is the file format reader for
Animated Portable Network Graphics (APNG) images.
APNGWriter is the file format writer for PNG and APNG files.
ARFReader is the file format reader for Axon Raw Format (ARF) files,
produced by INDEC BioSystems's
Imaging Workbench
software.
A utility class for outputting a BufferedImage as ASCII text.
AVIReader is the file format reader for AVI files.
AVIWriter is the file format writer for AVI files.
A utility class with convenience methods for manipulating images
in
BufferedImage form.AxisGuesser guesses which blocks in a file pattern correspond to which
dimensional axes (Z, T, C or S), potentially recommending an adjustment in
dimension order within the files, depending on the confidence of each guess.
Implements encoding (compress) and decoding (decompress) methods
for Base64.
BaseCodec contains default implementation and testing for classes
implementing the Codec interface, and acts as a base class for any
of the compression classes.
BaseTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
BaseZeissReader contains common functionality required by
readers for Zeiss AxioVision formats.
Line drawing styles.
Feature types.
Fill styles.
Line ending styles.
Point styles.
BDReader is the file format reader for BD Pathway datasets.
Reader for BDV files.
Miscellaneous plugins utility methods.
Subclass of VirtualStack that uses Bio-Formats to read planes on demand.
BIFormatReader is the superclass for file format readers
that use java.awt.image.BufferedImage as the native data type.
This class is used to generate a text file containing all of the
image file extensions supported by Bio-Formats.
BioRadGelReader is the file format reader for Bio-Rad gel files.
BioRadReader is the file format reader for Bio-Rad PIC files.
BioRadSCNReader is the reader for Bio-Rad .scn files
Deprecated.
Use loci.common.RandomAccessInputStream instead
Deprecated.
Use loci.common.RandomAccessOutputStream instead
BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
A boolean option for one of the plugins.
Extension of JFrame that allows the user to adjust caching settings.
BrukerReader is the file format reader for Bruker MRI files.
A reader wrapper for reading image planes as BufferedImage objects.
Retrieves BufferedImages from a data source using Bio-Formats.
A writer wrapper for writing image planes from BufferedImage objects.
BurleighReader is the file format reader for Burleigh .img files.
Retrieves byte arrays from a data source
(e.g., a file) using Bio-Formats.
A growable array of bytes.
Cache provides a means of managing subsets of large collections of image
planes in memory.
GUI component for managing a cache.
CacheConsole provides an interactive interpreter for
testing the Bio-Formats caching implementation.
A event indicating a cache update.
CacheException is the exception thrown when something
goes wrong performing a cache operation.
Indicator GUI component showing which planes are currently in the cache
for a given dimensional axis at a particular dimensional position.
A listener for cache updates.
Interface for components capable of reporting cache updates.
Superclass of cache sources that retrieve image planes
from a data source (e.g., a file) using Bio-Formats.
Superclass of cache strategies.
Thread responsible for updating the cache
(loading and dropping planes) in the background.
Logic for calibrating images.
CanonRawReader is the file format reader for Canon RAW files.
Reader for CellH5 (HDF) files.
CellH5Writer is the file format writer for CellH5 format.
Reader for Cellomics C01 files.
CellSensReader is the file format reader for cellSens .vsi files.
Custom widgets for configuring Bio-Formats CellSens .vsi support.
A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope (
http://www.yokogawa.com/scanner/products/cv1000e.htm).
CellWorxReader is the file format reader for CellWorx .pnl files.
This class represents image channels extracted from LMS image xmls.
For indexed color data representing true color, factors out
the indices, replacing them with the color table values directly.
Logic to automatically merge channels in a file.
Logic to automatically separate the channels in a file.
ClassList is a list of classes for use with
ImageReader or
ImageWriter, parsed from a configuration file such as readers.txt
or writers.txt.This class is an interface for any kind of compression or decompression.
Options for compressing and decompressing data.
Bio-Formats Importer custom color chooser dialog box.
Logic for colorizing images.
ColumbusReader is the file format reader for screens exported from PerkinElmer Columbus.
A file filter that recognizes files from a union of other filters.
An enumeration of compression types.
Logic for concatenating multiple images together.
A window for managing configuration of the Bio-Formats plugins.
Encompasses core metadata values.
Bio-Formats Importer crop options dialog box.
A crosshair strategy caches planes extending from the the current
dimensional position along each individual axis, but not combinations of
axes.
Extension of StackWindow with additional UI trimmings for animation,
virtual stack caching options, metadata, and general beautification.
A utility for reorganizing and converting QuickTime movies,
TIFF series and other 4D datasets.
DCIMGReader reads Hamamatsu DCIMG files.
Default implementation of
MetadataOptions.DelegateReader is a file format reader that selects which reader to use
for a format if there are two readers which handle the same format.
DeltavisionReader is the file format reader for Deltavision files.
This private class structure holds the details for the extended header.
Describes a DICOM attribute (integer tag, associated description, and expected VR).
Structure containing metadata for one DICOM file (instance).
Provide DICOM tags from a file containing JSON.
DicomReader is the file format reader for DICOM files.
Represents a complete DICOM tag, including the dictionary attribute,
actual VR, value, and any "child" tags (in the case of a sequence).
Represents a tile stored in a DICOM file.
Enumeration of valid DICOM value representations (VRs).
DicomWriter is the file format writer for DICOM files.
This class represents image dimensions extracted from LMS image xmls.
Handles swapping the dimension order of an image series.
Logic for displaying images and metadata onscreen using ImageJ.
DNGReader is the file format reader for Canon DNG (TIFF) files.
A double option for one of the plugins.
Configuration object for readers and writers.
Ecat7Reader is the file format reader for ECAT 7 files.
Provides a GUI for editing TIFF file comments.
Reader is the file format reader for Encapsulated PostScript (EPS) files.
EPSWriter is the file format writer for Encapsulated PostScript (EPS) files.
Core logic for the Bio-Formats Exporter ImageJ plugin.
A file filter based on file extensions, for use with a JFileChooser.
Generates fake image structures.
FakeReader is the file format reader for faking input data.
FEIReader is the file format reader for FEI and Philips .img files.
FEITiffReader is the file format reader for TIFF files produced by various
FEI software.
Encompasses basic metadata about a file.
Represents a collection of files meant to be part of the same
data series.
FilePatternBlock represents a single block in a
FilePattern.Bio-Formats Importer file pattern dialog box.
Logic to stitch together files with similar names.
FitsReader is the file format reader for
Flexible Image Transport System (FITS) images.
FlexReader is a file format reader for Evotec Flex files.
FluoviewReader is the file format reader for
Olympus Fluoview TIFF files AND Andor Bio-imaging Division (ABD) TIFF files.
A list entry for the configuration window's Formats tab.
FormatException is the exception thrown when something
goes wrong performing a file format operation.
A file filter for a biological file format, for use with a JFileChooser.
Abstract superclass of all biological file format readers and writers.
Abstract superclass of all biological file format readers.
A utility class for format reader and writer implementations.
Abstract superclass of all biological file format writers.
FujiReader is the file format reader for Fuji LAS 3000 datasets.
FV1000Reader is the file format reader for Fluoview FV 1000 OIB and
Fluoview FV 1000 OIF files.
GatanDM2Reader is the file format reader for Gatan .dm2 files.
GatanReader is the file format reader for Gatan files.
GelReader is the file format reader for
Molecular Dynamics GEL TIFF files.
GIFReader is the file format reader for Graphics Interchange Format
(GIF) files.
A utility class for working with graphical user interfaces.
HamamatsuVMSReader is the file format reader for Hamamatsu VMS datasets.
HISReader is the file format reader for Hamamatsu .his files.
HitachiReader is the file format reader for S-4800 files.
HRDGDFReader is the file format reader for the Gridded Data Format used
by NOAA's Hurricane Research Division.
This class implements Huffman decoding.
Options for compressing and decompressing Huffman data.
I2IReader is the file format reader for I2I files.
Interface for cache sources.
Interface for cache strategies.
Interface for reading pre-compressed image tiles.
Interface for writing pre-compressed image tiles.
ICSReader is the file format reader for ICS (Image Cytometry Standard)
files.
ICSWriter is the file format writer for ICS files.
Bio-Formats Importer id chooser dialog box.
Data structure for working with TIFF Image File Directories (IFDs).
Data structure for working with a list of TIFF
IFDs.An enumeration of IFD types.
Interface for all biological file format readers and writers.
Interface for all biological file format readers.
Interface for defining custom widgets for a specific file format reader.
Interface for all biological file format writers.
Echoes status messages to the ImageJ status bar.
Exception thrown when
FilePatternBlock encounters an
invalid pattern.A record containing boolean values
ImaconReader is the file format reader for Imacon .fff (TIFF) files.
ImageIOReader is the superclass for file format readers
that use the javax.imageio package.
ImageIOWriter is the superclass for file format writers that use the
javax.imageio library.
A high-level reader for
ImagePlus objects.A low-level reader for
ImageProcessor objects.Retrieves ImageJ image processors from an image reader.
ImageReader is the master file format reader for all supported formats.
A utility class with convenience methods for manipulating images
in primitive array form.
ImageViewer is a simple viewer/converter
for the Bio-Formats image formats.
ImageWriter is the master file format writer for all supported formats.
ImagicReader is the file format reader for IMAGIC files.
Reader for Bitplane Imaris 5.5 (HDF) files.
ImarisReader is the file format reader for Bitplane Imaris files.
ImarisTiffReader is the file format reader for
Bitplane Imaris 3 files (TIFF variant).
Interface for consumers of minima and maxima pixel intensities across a
given wavelength.
Reader for IMOD binary files.
Core logic for the Bio-Formats Importer ImageJ plugin.
Abstract superclass of importer dialogs.
Helper class for storing original metadata key/value pairs.
Helper class for managing Bio-Formats Importer options.
Helper class for presenting the user with dialog boxes
for configuring importer options.
Manages the import preparation process.
An enumeration of the steps in the import preparation process.
ImprovisionTiffReader is the file format reader for
Improvision TIFF files.
ImspectorReader is the file format reader for Imspector .msr files.
InCell3000Reader is the file format reader for InCell 3000.
InCellReader is the file format reader for InCell 1000/2000 datasets.
ColorModel that handles 16 bits per channel lookup tables.
INRReader is the file format reader for INR files.
A wizard for walking users through installation of third party
libraries and plugins used by the Bio-Formats plugins.
InveonReader is the file format reader for Inveon files.
IonpathMIBITiffReader is the file format reader for Ionpath MIBI TIFF files.
IPLabReader is the file format reader for IPLab (.IPL) files.
IPWReader is the file format reader for Image-Pro Workspace (IPW) files.
Interface for defining image pyramids.
Interface for defining pyramid resolutions.
Interface used to provide DICOM tags.
IvisionReader is the file format reader for IVision (.IPM) files.
Interface defining methods for reading data using JAI Image I/O.
Implementation of JAIIIOService for reading and writing JPEG-2000 data.
JavaWriter is the file format writer for Java source code.
JDCEReader is the file format reader for Molecular Devices JDCE plates.
JEOLReader is the file format reader for JEOL files.
Utility class for working with NetCDF/HDF files.
Utility class for working with HDF files.
An enumeration of JPEG 2000 box types.
This class implements JPEG 2000 compression and decompression.
Options for compressing and decompressing JPEG-2000 data.
A parser for JPEG 2000 metadata.
JPEG2000Reader is the file format reader for JPEG-2000 images.
An enumeration of JPEG 2000 segment markers.
JPEG2000Writer is the file format writer for JPEG2000 files.
This class implements JPEG compression and decompression.
JPEGReader is the file format reader for JPEG images.
Based upon the NDPI to OME-TIFF converter by Matthias Baldauf:
http://matthias-baldauf.at/software/ndpi_converter/
JPEGWriter is the file format writer for JPEG files.
Interface defining methods for working with JPEG-XR data
Interface defining methods for working with JPEG-XR data
JPKReader is the file format reader for JPK Instruments files.
JPXReader is the file format reader for JPX (3D JPEG-2000) images.
Reader for Khoros XV files.
Reader for Keller Lab Block (KLB) files.
KodakReader is the file format reader for Kodak Molecular Imaging .bip files.
L2DReader is the file format reader for Li-Cor L2D datasets.
SAX handler for parsing XML in Leica LIF and Leica TCS files.
LeicaReader is the file format reader for Leica files.
LeicaSCNReader is the file format reader for Leica SCN TIFF files.
LEOReader is the file format reader for LEO EM files.
Utility methods for verifying that classes
are present and versions are correct.
List of possible libraries for which to check.
A list entry for the configuration window's Libraries tab.
LiFlimReader is the file format reader for LI-FLIM files.
LIFReader is the file format reader for Leica LIF files.
Custom widgets for configuring Bio-Formats Leica LIF support.
LIMReader is the file format reader for Laboratory Imaging/Nikon LIM files.
This class represents an LMS xml file that references other LMS xml files
such as xlcfs and xlifs.
This class can be extended by readers of Leica Microsystems file formats that
include LASX generated XML (e.g.
file format in which actual image bytes are stored
This class loads and represents a Leica Microsystems image XML document that contains image metadata
This class extracts metadata information from Leica Microsystems image XML and stores it in the reader's CoreMetadata and MetadataTempBuffer
This class loads and represents a Leica Microsystems XML document (from
file or xml string)
Bio-Formats Importer location chooser dialog box.
An ImageJ plugin for displaying the Bio-Formats plugins configuration dialog.
ImageJ plugin for writing files using the OME Bio-Formats package.
This class provides macro extensions in ImageJ for Bio-Formats.
ImageJ plugin for reading files using the OME Bio-Formats package.
An ImageJ plugin for installing and upgrading libraries
related to the Bio-Formats plugins.
Utility methods for ImageJ preferences for Bio-Formats plugins.
LOFReader is the file format reader for Leica Microsystems' LOF files.
This class loads and represents a Leica Microsystems XML document that has been extracted from a LOF file
Decompresses lossless JPEG images.
This class implements LZO decompression.
This is an optimized LZW codec for use with TIFF files.
Convenience class that simplifies implemention of ImageJ macro extensions.
Bio-Formats Importer general options dialog box.
Creates sample OME-TIFF datasets according to the given parameters.
Interface defining methods for parsing MDB database files.
Implementation of
MDBService for parsing MDB database files.ReaderWrapper implementation which caches the state of the
delegate (including and other ReaderWrapper instances)
after Memoizer.setId(String) has been called.Helper implementation that can be used to implement
Memoizer.Deser
classes for libraries working solely with byte arrays.Bio-Formats Importer memory usage confirmation dialog box.
Deprecated.
Use ome.xml.meta.MetadataConverter.
A container of metadata for FormatReader and other reader implementations.
Holds metadata-related options.
This class is used to temporarily store metadata information extracted from
Leica XML before it is written to the reader's MetadataStore
A utility class for working with metadata objects,
including
MetadataStore, MetadataRetrieve,
and OME-XML strings.Interface defining methods for interacting with the OME Metakit library.
Implementation of MetakitService for interacting with the
OME Metakit library.
MetamorphTiffReader is the file format reader for TIFF files produced by
Metamorph software version 7.5 and above.
Reader is the file format reader for Metamorph STK files.
MetamorphTiffReader is the file format reader for TIFF files produced by
Metamorph software version 7.5 and above.
MetaxpressTiffReader is the file format reader for MetaXpress .htd + TIFF files.
MIASReader is the file format reader for Maia Scientific MIAS-2 datasets.
MicroCTReader is the file format reader for VFF files from a GE MicroCT scanner.
MicromanagerReader is the file format reader for Micro-Manager files.
MikroscanTiffReader is the file format reader for Mikroscan TIFF files.
MINCReader is the file format reader for MINC MRI files.
MinimalTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
Logic to compute minimum and maximum values for each channel.
MissingLibraryException is the exception thrown when a particular data
stream or filename requires a library that is not present on the system.
Methods for compressing and decompressing QuickTime Motion JPEG-B data.
Options for compressing and decompressing MJPB data.
MNGReader is the file format reader for Multiple-image Network Graphics
(MNG) files.
Represents a subdimension of Z, C, or T as needed for supporting Modulo
annotations.
MolecularImagingReader is the file format reader for Molecular Imaging files.
MRCReader is the file format reader for MRC files.
MRWReader is the file format reader for Minolta MRW files.
Methods for compressing and decompressing data using Microsoft RLE.
Methods for compressing and decompressing data using Microsoft Video 1.
MultipleImagesReader presents a number of image files as one image reference
NAFReader is the file format reader for Hamamatsu Aquacosmos NAF files.
DefaultHandler implementation for handling XML produced by Nikon Elements.
ND2Reader is the file format reader for Nikon ND2 files.
Custom widgets for configuring Bio-Formats ND2 support.
NDPIReader is the file format reader for Hamamatsu .ndpi files.
NDPISReader is the file format reader for Hamamatsu .ndpis files.
Utility class for working with NetCDF/HDF files.
Utility class for working with NetCDF/HDF files.
NiftiReader is the file format reader for NIfTI files.
This class implements Nikon decompression.
Options for compressing and decompressing Nikon NEF data.
NikonElementsTiffReader is the file format reader for TIFF files produced
by Nikon Elements.
NikonReader is the file format reader for Nikon NEF (TIFF) files.
NikonTiffReader is the file format reader for Nikon TIFF files.
A file filter that selects files with no extension,
for use with a JFileChooser.
File format reader for NRRD files; see http://teem.sourceforge.net/nrrd.
NumberFilter is a helper filter for FilePattern.findPattern().
OBFReader is the file format reader for Imspector OBF files.
OIRReader is the file format reader for Olympus .oir files.
This is a class that wraps three numbers c,z,t and an object
can be used as a key in a hashmap.
OlympusTileReader is the file format reader for Olympus .omp2info files.
Extension of OMEXMLMetadataImpl that allows for pyramid resolution storage and retrieval.
OMETiffReader is the file format reader for
OME-TIFF
files.
OMETiffWriter is the file format writer for OME-TIFF files.
OMEXMLReader is the file format reader for OME-XML files.
OMEXMLWriter is the file format writer for OME-XML files.
OpenlabRawReader is the file format reader for Openlab RAW files.
OpenlabReader is the file format reader for Openlab LIFF files.
OperettaReader is the file format reader for PerkinElmer Operetta data.
Base class for an option for one of the plugins.
Base class for options dialogs.
Base class for ImageJ preferences for plugins.
OxfordInstrumentsReader is the file format reader for
Oxford Instruments .top files.
This class implements packbits decompression.
A codec which just returns the exact data it was given, performing no
compression or decompression.
PCIReader is the file format reader for SimplePCI (Compix) .cxd files.
PCORAWReader is the file format reader for PCORAW files.
PCXReader is the file format reader for PCX files (originally used by
PC Paintbrush; now used in Zeiss' LSM Image Browser).
PDSReader is the file format reader for Perkin Elmer densitometer files.
PerkinElmerReader is the file format reader for PerkinElmer files.
PGMReader is the file format reader for Portable Gray Map (PGM) images.
Utility class for working with TIFF photometric interpretations.
PhotoshopTiffReader is the file format reader for
Adobe Photoshop TIFF files.
PictReader is the file format reader for Apple PICT files.
Interface defining methods for reading Microsoft OLE2 documents using
OME's fork of Apache POI.
PovrayReader is the file format reader for POV-Ray .df3 files.
PQBinReader is the file format reader for PicoQuant .bin files.
Metadata structure for Prairie Technologies' TIFF-based format.
A value in a Prairie metadata dictionary.
A leaf value with an actual
PrairieMetadata.ValueItem.value() as well as an optional
PrairieMetadata.ValueItem.description().A table of values.
PrairieReader is the file format reader for
Prairie Technologies' TIFF variant.
PreviewPane is a panel for use as a JFileChooser accessory, displaying
a thumbnail for the selected image, loaded in a separate thread.
PSDReader is the file format reader for Photoshop PSD files.
PyramidOMETiffWriter is the file format writer for pyramid OME-TIFF files.
PyramidTiffReader is the file format reader for pyramid TIFFs.
QTReader is the file format reader for QuickTime movie files.
Methods for compressing and decompressing data using QuickTime RLE.
QTWriter is the file format writer for uncompressed QuickTime movie files.
QuesantReader is the file format reader for Quesant .afm files.
Bio-Formats Importer range chooser dialog box.
Abstract superclass of reader logic that wraps other readers.
Image processor extension that records commands executed upon it.
A rectangle strategy caches planes extending from the the current
dimensional position along each axis and combination of axes.
Represents a single subresolution in a pyramid.
Utility class helping with generating human-readable resource names
based on alphanumeric indexing.
RHKReader is the file format reader for RHK Technologies files.
This class helps saving ROI information to a reader's MetadataStore
Utility class for managing regions of interest within ImageJ.
Implements encoding and decoding methods for Apple RPZA.
SBIGReader is the file format reader for SBIG files.
ScanrReader is the file format reader for Olympus ScanR datasets.
SDTInfo encapsulates the header information for
Becker & Hickl SPC-Image SDT files.
SDTReader is the file format reader for
Becker & Hickl SPC-Image SDT files.
Custom widgets for configuring Bio-Formats SDT support.
Text panel with search capabilities.
SeikoReader is the file format reader for Seiko .xqd/.xqf files.
SEQReader is the file format reader for Image-Pro Sequence files.
Bio-Formats Importer series chooser dialog box.
A plugin that displays a small window containing shortcuts to the
plugins, including the Bio-Formats Importer, Bio-Formats Exporter,
Stack Colorizer and Stack Slicer.
Drag and drop transfer handler for Bio-Formats Plugins Shortcut Window.
SIFReader is the file format reader for Andor SIF files.
DataBuffer that stores signed bytes.
ColorModel that handles 8, 16 and 32 bits per channel signed data.
DataBuffer that stores signed shorts.
SimplePCITiffReader is the file format reader for TIFF files produced by
SimplePCI software.
SISReader is the file format reader for Olympus Soft Imaging Solutions
TIFF files.
A plugin for splitting an image stack into separate
channels, focal planes and/or time points.
SlidebookReader is the file format reader for 3I Slidebook files.
SMCameraReader is the file format reader for SM camera files.
SPCReader is the file format reader for
Becker & Hickl SPC-Image SPC FIFO files.
SPEReader is the file format reader for Princeton Instruments SPE .spe files.
SpeHeaderEntry is an Enum which provides a list of all available SPE header entries along
with the offset value from the top of the header in bytes and their associated data type
SpeHeaderType is an Enum representing the available data types stored in the SPE header
SpiderReader is the file format reader for SPIDER files.
A 1.4 file that provides utility methods for
creating form- or grid-style layouts with SpringLayout.
A string option for one of the plugins.
Abstract superclass of all biological file format readers
that can handle image pyramids.
SVSReader is the file format reader for Aperio SVS TIFF files.
Bio-Formats Importer dimension swapper dialog box.
Extends
CoreMetadata to include the notion of an "input order" for planes:
the input order being the order planes are stored on disk.File format reader for Truevision Targa files.
This class implements Targa RLE decompression.
TCSReader is the file format reader for Leica TCS TIFF files and their
companion XML file.
Writer implementation that writes to a JTextArea document.
Reader for text files containing tables of data.
Loads thumbnails for Bio-Formats Importer
series chooser in a separate thread.
Utility class for performing compression operations with a TIFF file.
Generally useful TIFF-related constants.
TiffDelegateReader is a file format reader for TIFF files.
Custom widgets for configuring Bio-Formats TIFF support.
This class represents a single raw TIFF IFD entry.
TiffJAIReader is a file format reader for TIFF images.
Parses TIFF data from an input source.
A rational number (numerator over denominator).
TiffReader is the file format reader for regular TIFF files,
not of any specific TIFF variant.
Parses TIFF data from an input source.
TiffWriter is the file format writer for TIFF files.
Reader for decoding JPEG images using java.awt.Toolkit and TurboJPEG.
TillVisionReader is the file format reader for TillVision files.
Reader for TissueFAXS format from TissueGnostics.
TurboJPEG utility class (cannot be instantiated)
TurboJPEG compressor
Custom filter callback interface
TurboJPEG decompressor
Fractional scaling factor
Lossless transform parameters
TurboJPEG lossless transformer
TopometrixReader is the file format reader for TopoMetrix .tfr, .ffr,
.zfr, .zfp, and .2fl files.
TrestleReader is the file format reader for Trestle slide datasets.
ColorSpace for 2-channel images.
UBMReader is the file format reader for UBM .pr3 files.
UnisokuReader is the file format reader for Unisoku STM files.
UnknownFormatException is the exception thrown when the format of a
particular data stream or filename cannot be recognized or is unsupported.
DataBuffer that stores unsigned ints.
ColorModel that handles unsigned 32 bit data.
UnsupportedCompressionException is the exception thrown when the compression
scheme used in a particular file or stream is unsupported.
A plugin for updating the Bio-Formats plugins.
Utility that checks for a new stable version, and optionally installs
a new version of Bio-Formats ueber tools.
Class that allows checking for new versions of Bio-Formats, as well as
updating to the latest stable, daily, or trunk version.
Bio-Formats Importer upgrade checker dialog box.
V3DrawWriter writes images in the .v3draw format for rapid I/O in Vaa3D, an open-source 3D visualization and
analysis toolkit.
VarianFDFReader is the file format reader for Varian FDF files.
VectraReader is the reader for PerkinElmer Vectra QPTIFF data
VeecoReader is the file format reader for Veeco HDF files.
VentanaReader is the file format reader for Ventana .bif files.
VGSAMReader is the file format reader for VG SAM .dti files.
Extension of
ImagePlus that supports
Bio-Formats-driven virtual stacks.TODO
VisitechReader is the file format reader for Visitech XYS files.
VolocityClippingReader is the file format reader for Volocity library
clipping files.
VolocityReader is the file format reader for Volocity library files.
WATOPReader is the file format reader for WA Technology .wat files.
Represents a well in a plate.
Utility methods for managing ImageJ dialogs and windows.
Generic wrapper for codecs from ome-codecs.
Helper class for readers which wrap other readers.
Abstract superclass of writer logic that wraps other writers.
This class loads and represents a Leica Microsystems XLCF xml document
This class represents a Leica Microsystems XLEF xml document,
a project file which references xlifs and optionally xlcfs
XLEFReader is the file format reader for Leica Microsystems' XLEF files.
Helper class to sort file paths by name and depth
This class loads and represents a Leica Microsystems XLIF xml document
A tree cell renderer for displaying syntax highlighted XML in a JTree.
Cell renderer item for use as DefaultMutableTreeNode user object.
A window containing syntax highlighted XML as a tree.
ZeissCZIReader is the file format reader for Zeiss .czi files.
Custom widgets for configuring Bio-Formats Zeiss CZI support.
Zeiss LMS reader for data from Zeiss CSM 700 systems.
ZeissLSMReader is the file format reader for Zeiss LSM files.
SAX handler for parsing XML in Zeiss TIFF files.
ZeissTIFFReader is the file format reader for Zeiss AxioVision TIFF
files and their companion XML file.
ZeissXRMReader is the file format reader for Zeiss X-Ray Microscopy
.txm and .txrm files.
ZeissZVIReader is the file format reader for Zeiss ZVI files.
Reader for Zip files.
This class implements ZLIB decompression.