Package loci.formats.tools

Class AmiraParameters

java.lang.Object

loci.formats.tools.AmiraParameters

public class AmiraParameters
extends Object

AmiraParameters handles parsing and writing of AmiraMesh headers.

Author:

Gregory Jefferis jefferis at gmail.com, Johannes Schindelin johannes.schindelin at gmx.de

Field Summary

Fields

Modifier and Type	Field	Description
boolean	ascii
protected char	c
protected int	column
int	depth
int	firstDataStream
int	height
protected loci.common.RandomAccessInputStream	in
boolean	littleEndian
private static final org.slf4j.Logger	LOGGER
protected Map	map
int	nStreams
protected int	row
String[]	streamNames
protected Map	streams
String[]	streamTypes
int	width
double	x0
double	x1
double	y0
double	y1
double	z0
double	z1

Constructor Summary

Constructors

Constructor	Description
AmiraParameters(String path)
AmiraParameters(loci.common.RandomAccessInputStream inputStream)

Method Summary

Modifier and Type	Method	Description
static String	entryToString(Object object, String indent)
protected void	extractCoreMetaData()
Map	getMap()
Map	getStreams()
static void	main(String[] args)
protected char	readByte()
protected Double[]	readDoubleArray(int count)
protected void	readFile(String path)
protected void	readFile(loci.common.RandomAccessInputStream inputStream)
protected Integer[]	readIntArray()
protected Integer[]	readIntArray(int count)
protected String	readKey()
protected Map	readMap()
protected Number	readNumber()
protected Number[]	readNumberArray()
protected String	readQuotedString()
protected void	readTopLevel()
protected void	skipComment()
protected void	skipWhiteSpace()
protected void	syntaxError(String message)
String	toString()
static String	toString(Map map, String indent)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

width

public int width

height

public int height

depth

public int depth

firstDataStream

public int firstDataStream

x0

public double x0

y0

public double y0

z0

public double z0

x1

public double x1

y1

public double y1

z1

public double z1

littleEndian

public boolean littleEndian

ascii

public boolean ascii

nStreams

public int nStreams

streamNames

public String[] streamNames

streamTypes

public String[] streamTypes

in

protected transient loci.common.RandomAccessInputStream in

map

protected Map map

streams

protected Map streams

column

protected int column

row

protected int row

c

protected char c

LOGGER

private static final org.slf4j.Logger LOGGER

Constructor Details

AmiraParameters

public AmiraParameters(String path)
                throws FormatException

Throws:

FormatException

AmiraParameters

public AmiraParameters(loci.common.RandomAccessInputStream inputStream)
                throws FormatException,
IOException

Throws:

FormatException

IOException

Method Details

readFile

protected void readFile(String path)
                 throws FormatException

Throws:

FormatException

readFile

protected void readFile(loci.common.RandomAccessInputStream inputStream)
                 throws FormatException,
IOException

Throws:

FormatException

IOException

extractCoreMetaData

protected void extractCoreMetaData()
                            throws FormatException

Throws:

FormatException

syntaxError

protected void syntaxError(String message)
                    throws FormatException

Throws:

FormatException

readTopLevel

protected void readTopLevel()
                     throws FormatException,
IOException

Throws:

FormatException

IOException

readByte

protected char readByte()
                 throws IOException

Throws:

IOException

skipComment

protected void skipComment()
                    throws IOException

Throws:

IOException

skipWhiteSpace

protected void skipWhiteSpace()
                       throws IOException

Throws:

IOException

readKey

protected String readKey()
                  throws IOException

Throws:

IOException

readNumber

protected Number readNumber()
                     throws FormatException,
IOException

Throws:

FormatException

IOException

readIntArray

protected Integer[] readIntArray()
                          throws FormatException,
IOException

Throws:

FormatException

IOException

readNumberArray

protected Number[] readNumberArray()
                            throws FormatException,
IOException

Throws:

FormatException

IOException

readIntArray

protected Integer[] readIntArray(int count)
                          throws FormatException,
IOException

Throws:

FormatException

IOException

readDoubleArray

protected Double[] readDoubleArray(int count)
                            throws FormatException,
IOException

Throws:

FormatException

IOException

readQuotedString

protected String readQuotedString()
                           throws FormatException,
IOException

Throws:

FormatException

IOException

readMap

protected Map readMap()
               throws FormatException,
IOException

Throws:

FormatException

IOException

getMap

public Map getMap()

getStreams

public Map getStreams()

toString

public String toString()

Overrides:

toString in class Object

toString

public static String toString(Map map,
 String indent)
                       throws FormatException

Throws:

FormatException

entryToString

public static String entryToString(Object object,
 String indent)
                            throws FormatException

Throws:

FormatException

main

public static void main(String[] args)