Package loci.plugins.util

Class LociPrefs

java.lang.Object

loci.plugins.util.LociPrefs

public final class LociPrefs
extends Object

Utility methods for ImageJ preferences for Bio-Formats plugins.

Field Summary

Fields

Modifier and Type	Field	Description
static final String	PREF_CELLSENS_FAIL
static final String	PREF_CZI_ATTACHMENT
static final String	PREF_CZI_AUTOSTITCH
static final String	PREF_LEICA_LIF_PHYSICAL_SIZE
static final String	PREF_ND2_CHUNKMAP
static final String	PREF_READER_ENABLED
static final String	PREF_READER_WINDOWLESS
static final String	PREF_SDT_INTENSITY
static final String	PREF_SLICE_LABEL_BASE_INDEX
static final String	PREF_SLICE_LABEL_PATTERN
static final String	PREF_TIFF_IMAGEIO

Constructor Summary

Constructors

Modifier	Constructor	Description
private	LociPrefs()

Method Summary

Modifier and Type	Method	Description
static boolean	allowCZIAutostitch()
private static boolean	getPref(String pref, Class<? extends IFormatReader> c, boolean defaultValue)
static int	getSliceLabelBaseIndex()
static String	getSliceLabelPattern()
static boolean	includeCZIAttachments()
static boolean	isCellsensFailOnMissing()
static boolean	isLeicaLIFPhysicalSizeBackwardsCompatible()
static boolean	isReaderEnabled(Class<? extends IFormatReader> c)
static boolean	isSDTIntensity()
static boolean	isTiffImageIO()
static boolean	isWindowless(IFormatReader r)	Gets whether windowless mode should be used when opening this reader's currently initialized dataset.
static ImageReader	makeImageReader()	Creates an image reader according to the current configuration settings, including which format readers are currently enabled, as well as format-specific configuration settings.
static boolean	useND2Chunkmap()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

PREF_READER_ENABLED

public static final String PREF_READER_ENABLED

See Also:

• Constant Field Values

PREF_READER_WINDOWLESS

public static final String PREF_READER_WINDOWLESS

See Also:

• Constant Field Values

PREF_SDT_INTENSITY

public static final String PREF_SDT_INTENSITY

See Also:

• Constant Field Values

PREF_TIFF_IMAGEIO

public static final String PREF_TIFF_IMAGEIO

See Also:

• Constant Field Values

PREF_CZI_AUTOSTITCH

public static final String PREF_CZI_AUTOSTITCH

See Also:

• Constant Field Values

PREF_CZI_ATTACHMENT

public static final String PREF_CZI_ATTACHMENT

See Also:

• Constant Field Values

PREF_ND2_CHUNKMAP

public static final String PREF_ND2_CHUNKMAP

See Also:

• Constant Field Values

PREF_LEICA_LIF_PHYSICAL_SIZE

public static final String PREF_LEICA_LIF_PHYSICAL_SIZE

See Also:

• Constant Field Values

PREF_SLICE_LABEL_PATTERN

public static final String PREF_SLICE_LABEL_PATTERN

See Also:

• Constant Field Values

PREF_SLICE_LABEL_BASE_INDEX

public static final String PREF_SLICE_LABEL_BASE_INDEX

See Also:

• Constant Field Values

PREF_CELLSENS_FAIL

public static final String PREF_CELLSENS_FAIL

See Also:

• Constant Field Values

Constructor Details

LociPrefs

private LociPrefs()

Method Details

makeImageReader

public static ImageReader makeImageReader()

Creates an image reader according to the current configuration settings, including which format readers are currently enabled, as well as format-specific configuration settings.

isWindowless

public static boolean isWindowless(IFormatReader r)

Gets whether windowless mode should be used when opening this reader's currently initialized dataset.

isReaderEnabled

public static boolean isReaderEnabled(Class<? extends IFormatReader> c)

isSDTIntensity

public static boolean isSDTIntensity()

isTiffImageIO

public static boolean isTiffImageIO()

allowCZIAutostitch

public static boolean allowCZIAutostitch()

includeCZIAttachments

public static boolean includeCZIAttachments()

useND2Chunkmap

public static boolean useND2Chunkmap()

isLeicaLIFPhysicalSizeBackwardsCompatible

public static boolean isLeicaLIFPhysicalSizeBackwardsCompatible()

getSliceLabelPattern

public static String getSliceLabelPattern()

getSliceLabelBaseIndex

public static int getSliceLabelBaseIndex()

isCellsensFailOnMissing

public static boolean isCellsensFailOnMissing()

getPref

private static boolean getPref(String pref,
 Class<? extends IFormatReader> c,
 boolean defaultValue)