Package loci.formats.in
Class JPEGReader.DefaultJPEGReader
java.lang.Object
loci.formats.FormatHandler
loci.formats.FormatReader
loci.formats.in.BIFormatReader
loci.formats.in.ImageIOReader
loci.formats.in.JPEGReader.DefaultJPEGReader
- All Implemented Interfaces:
Closeable,AutoCloseable,ICompressedTileReader,IFormatHandler,IFormatReader,IMetadataConfigurable,IPyramidHandler
- Enclosing class:
JPEGReader
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Field Summary
Fields inherited from class loci.formats.FormatReader
core, coreIndex, datasetDescription, domains, fillColor, filterMetadata, flattenedResolutions, group, hasCompanionFiles, in, indexedAsRGB, metadata, metadataStore, normalizeData, resolution, saveOriginalMetadata, series, suffixNecessary, suffixSufficient, THUMBNAIL_DIMENSIONFields inherited from class loci.formats.FormatHandler
COMPRESSION_SUFFIXES, currentId, format, LOGGER, metadataOptions, suffixesFields inherited from interface loci.formats.IFormatReader
CAN_GROUP, CANNOT_GROUP, MUST_GROUP -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected voidInitializes the given file (parsing header information, etc.).booleanisThisType(String name, boolean open) Checks if a file matches the type of this format reader.booleanisThisType(loci.common.RandomAccessInputStream stream) Checks if the given stream is a valid stream for this file format.Methods inherited from class loci.formats.in.ImageIOReader
close, getOptimalTileHeight, initImage, openPlaneMethods inherited from class loci.formats.in.BIFormatReader
getNativeDataType, openBytesMethods inherited from class loci.formats.FormatReader
addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMetaList, addMeta, addMetaList, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMetaList, close, coreIndexToSeries, fileGroupOption, flattenHashtables, get16BitLookupTable, get8BitLookupTable, getAcquisitionMode, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getArcType, getAvailableOptions, getBinning, getBitsPerPixel, getCompression, getContrastMethod, getCoreIndex, getCoreMetadataList, getCorrection, getCurrentCore, getCurrentFile, getDatasetStructureDescription, getDetectorType, getDimensionOrder, getDimensionOrder, getDomains, getEffectiveSizeC, getExperimentType, getFilamentType, getFillColor, getFillRule, getFilterType, getFontFamily, getFontStyle, getGlobalMeta, getGlobalMetadata, getIlluminationType, getImageCount, getImmersion, getIndex, getIndex, getLaserMedium, getLaserType, getMarker, getMedium, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getMicrobeamManipulationType, getMicroscopeType, getModuloC, getModuloT, getModuloZ, getNamingConvention, getOptimalTileWidth, getPixelType, getPixelType, getPossibleDomains, getPulse, getRequiredDirectories, getResolution, getResolutionCount, getRGBChannelCount, getRotationTransform, getSeries, getSeriesCount, getSeriesMeta, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getThumbSizeX, getThumbSizeY, getTileColumns, getTileRows, getUnderlyingReaders, getUsedFiles, getUsedFiles, getZCTCoords, getZCTModuloCoords, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isRGB, isSingleFile, isThisType, isThisType, isThumbnailSeries, isUsedFile, makeFilterMetadata, openBytes, openBytes, openBytes, openThumbBytes, readPlane, readPlane, readPlane, reopenFile, seriesToCoreIndex, setCoreIndex, setFillColor, setFlattenedResolutions, setGroupFiles, setId, setMetadataFiltered, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setResolution, setSeries, updateMetadataListsMethods inherited from class loci.formats.FormatHandler
checkSuffix, checkSuffix, getFormat, getMetadataOptions, getSuffixes, getSupportedMetadataLevels, setMetadataOptionsMethods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitMethods inherited from interface loci.formats.ICompressedTileReader
getTileCodec, getTileCodecOptions, openCompressedBytes, openCompressedBytesMethods inherited from interface loci.formats.IFormatHandler
getFormat, getSuffixesMethods inherited from interface loci.formats.IMetadataConfigurable
getMetadataOptions, getSupportedMetadataLevels, setMetadataOptions
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Constructor Details
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DefaultJPEGReader
public DefaultJPEGReader()
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Method Details
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isThisType
Description copied from class:FormatReaderChecks if a file matches the type of this format reader. Checks filename suffixes against those known for this format. If the suffix check is inconclusive and the open parameter is true, the file is opened and tested withFormatReader.isThisType(RandomAccessInputStream).- Specified by:
isThisTypein interfaceIFormatReader- Overrides:
isThisTypein classFormatReader- Parameters:
open- If true, and the file extension is insufficient to determine the file type, the (existing) file is opened for further analysis.
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initFile
Description copied from class:FormatReaderInitializes the given file (parsing header information, etc.). Most subclasses should override this method to perform initialization operations such as parsing metadata.- Overrides:
initFilein classImageIOReader- Throws:
FormatException- if a parsing error occurs processing the file.IOException- if an I/O error occurs processing the file
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isThisType
Description copied from interface:IFormatReaderChecks if the given stream is a valid stream for this file format. The number of bytes read is format-dependent.- Specified by:
isThisTypein interfaceIFormatReader- Overrides:
isThisTypein classFormatReader- Parameters:
stream- A RandomAccessInputStream representing the file to check. The first byte in the stream is assumed to be the first byte in the file.- Returns:
- true if the file represented by the stream can be read by this reader; false otherwise.
- Throws:
IOException
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