Package | Description |
---|---|
loci.formats |
Bio-Formats: a library for reading and writing popular microscopy file
formats.
|
loci.formats.gui |
Package containing Bio-Formats graphical user interface code.
|
loci.formats.out |
Package containing Bio-Formats file format writers.
|
Modifier and Type | Class and Description |
---|---|
class |
FormatWriter
Abstract superclass of all biological file format writers.
|
class |
ImageWriter
ImageWriter is the master file format writer for all supported formats.
|
class |
WriterWrapper
Abstract superclass of writer logic that wraps other writers.
|
Modifier and Type | Field and Description |
---|---|
protected IFormatWriter |
WriterWrapper.writer
FormatWriter used to write the file.
|
protected IFormatWriter[] |
ImageWriter.writers
List of supported file format writers.
|
Modifier and Type | Field and Description |
---|---|
private static ClassList<IFormatWriter> |
ImageWriter.defaultClasses
Default list of writer classes, for use with noargs constructor.
|
Modifier and Type | Method and Description |
---|---|
IFormatWriter |
WriterWrapper.getWriter()
Gets the wrapped writer.
|
IFormatWriter |
ImageWriter.getWriter()
Gets the writer used to save the current file.
|
IFormatWriter |
ImageWriter.getWriter(java.lang.Class<? extends IFormatWriter> c)
Gets the file format writer instance matching the given class.
|
IFormatWriter |
ImageWriter.getWriter(java.lang.String id)
Gets the writer used to save the given file.
|
IFormatWriter[] |
ImageWriter.getWriters()
Gets all constituent file format writers.
|
IFormatWriter |
WriterWrapper.unwrap()
Unwraps nested wrapped writers until the core writer (i.e., not
a
WriterWrapper or ImageWriter ) is found. |
IFormatWriter |
WriterWrapper.unwrap(java.lang.Class<? extends IFormatWriter> writerClass,
java.lang.String id)
Unwraps nested wrapped writers until the given writer class is found.
|
IFormatWriter |
WriterWrapper.unwrap(java.lang.String id)
Unwraps nested wrapped writers until the core writer (i.e., not
a
WriterWrapper or ImageWriter ) is found. |
Modifier and Type | Method and Description |
---|---|
static ClassList<IFormatWriter> |
ImageWriter.getDefaultWriterClasses() |
Modifier and Type | Method and Description |
---|---|
static void |
FormatTools.convert(IFormatReader input,
IFormatWriter output,
java.lang.String outputFile)
Convenience method for writing all of the images and metadata obtained
from the specified IFormatReader into the specified IFormatWriter.
|
Modifier and Type | Method and Description |
---|---|
WriterWrapper |
WriterWrapper.duplicate(java.lang.Class<? extends IFormatWriter> imageWriterClass)
Performs a deep copy of the writer, including nested wrapped writers.
|
private WriterWrapper |
WriterWrapper.duplicateRecurse(java.lang.Class<? extends IFormatWriter> imageWriterClass) |
IFormatWriter |
ImageWriter.getWriter(java.lang.Class<? extends IFormatWriter> c)
Gets the file format writer instance matching the given class.
|
IFormatWriter |
WriterWrapper.unwrap(java.lang.Class<? extends IFormatWriter> writerClass,
java.lang.String id)
Unwraps nested wrapped writers until the given writer class is found.
|
Constructor and Description |
---|
WriterWrapper(IFormatWriter w)
Constructs a writer wrapper around the given writer.
|
Constructor and Description |
---|
ImageWriter(ClassList<IFormatWriter> classList)
Constructs a new ImageWriter from the given list of writer classes.
|
Modifier and Type | Class and Description |
---|---|
class |
BufferedImageWriter
A writer wrapper for writing image planes from BufferedImage objects.
|
Modifier and Type | Field and Description |
---|---|
protected IFormatWriter |
ImageViewer.fileWriter
Writer for files on disk.
|
Modifier and Type | Method and Description |
---|---|
static BufferedImageWriter |
BufferedImageWriter.makeBufferedImageWriter(IFormatWriter w)
Converts the given writer into a BufferedImageWriter, wrapping if needed.
|
protected void |
ImageViewer.save(java.lang.String id,
IFormatWriter w)
Saves to the given data destination using the specified writer
in a separate thread.
|
static byte[] |
BufferedImageWriter.toBytes(java.awt.image.BufferedImage image,
IFormatWriter writer) |
Constructor and Description |
---|
BufferedImageWriter(IFormatWriter r)
Constructs a BufferedImageWriter with the given writer.
|
Modifier and Type | Class and Description |
---|---|
class |
APNGWriter
APNGWriter is the file format writer for PNG and APNG files.
|
class |
AVIWriter
AVIWriter is the file format writer for AVI files.
|
class |
CellH5Writer
CellH5Writer is the file format writer for CellH5 format.
|
class |
EPSWriter
EPSWriter is the file format writer for Encapsulated PostScript (EPS) files.
|
class |
ICSWriter
ICSWriter is the file format writer for ICS files.
|
class |
ImageIOWriter
ImageIOWriter is the superclass for file format writers that use the
javax.imageio library.
|
class |
JavaWriter
JavaWriter is the file format writer for Java source code.
|
class |
JPEG2000Writer
JPEG2000Writer is the file format writer for JPEG2000 files.
|
class |
JPEGWriter
JPEGWriter is the file format writer for JPEG files.
|
class |
LegacyQTWriter
LegacyQTWriter is a file format writer for QuickTime movies.
|
class |
OMETiffWriter
OMETiffWriter is the file format writer for OME-TIFF files.
|
class |
OMEXMLWriter
OMEXMLWriter is the file format writer for OME-XML files.
|
class |
PyramidOMETiffWriter
PyramidOMETiffWriter is the file format writer for pyramid OME-TIFF files.
|
class |
QTWriter
QTWriter is the file format writer for uncompressed QuickTime movie files.
|
class |
TiffWriter
TiffWriter is the file format writer for TIFF files.
|
class |
V3DrawWriter
V3DrawWriter writes images in the .v3draw format for rapid I/O in Vaa3D, an open-source 3D visualization and
analysis toolkit.
|
class |
WlzWriter
WlzWriter is the file format writer for Woolz files.
|
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