- c - Variable in class jj2000.j2k.entropy.decoder.MQDecoder
-
The current bit code
- c - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The current bit code
- c - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
The component on which to compress
- C - Static variable in class loci.formats.in.CellSensReader
-
- c - Variable in class loci.formats.in.LeicaSCNReader.Dimension
-
- c - Variable in class loci.formats.in.MicromanagerReader.Index
-
- c - Variable in class loci.formats.in.OperettaReader.Plane
-
- c - Variable in class loci.formats.tools.AmiraParameters
-
- C01_MAGIC_BYTES - Static variable in class loci.formats.in.CellomicsReader
-
- C_AXIS - Static variable in class loci.formats.AxisGuesser
-
Axis type for channels.
- C_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- C_PREFIXES - Static variable in class loci.formats.AxisGuesser
-
Prefixes indicating channel dimension.
- C_STRING - Static variable in class loci.formats.in.SDTInfo
-
- Cache - Class in loci.formats.cache
-
Cache provides a means of managing subsets of large collections of image
planes in memory.
- Cache(ICacheStrategy, ICacheSource, boolean) - Constructor for class loci.formats.cache.Cache
-
Constructs an object cache with the given cache strategy and source.
- cache - Variable in class loci.formats.cache.Cache
-
Master array containing cached objects.
- cache - Variable in class loci.formats.cache.CacheUpdater
-
- cache - Variable in class loci.formats.gui.CacheComponent
-
The cache that this component controls.
- cache - Variable in class loci.formats.gui.CacheIndicator
-
- cache - Variable in class loci.plugins.util.BFVirtualStack
-
- CacheComponent - Class in loci.formats.gui
-
GUI component for managing a cache.
- CacheComponent(Cache, String[]) - Constructor for class loci.formats.gui.CacheComponent
-
Creates a cache GUI component.
- CacheComponent(Cache, String[], String) - Constructor for class loci.formats.gui.CacheComponent
-
Creates a cache GUI component with the ability to change between the
various source types (mainly for debugging purposes).
- CacheConsole - Class in loci.formats.tools
-
CacheConsole provides an interactive interpreter for
testing the Bio-Formats caching implementation.
- CacheConsole() - Constructor for class loci.formats.tools.CacheConsole
-
- cachedDecoders - Variable in class loci.formats.codec.HuffmanCodec
-
- cachedTileBuffer - Variable in class loci.formats.in.MIASReader
-
Cached tile buffer to avoid re-allocations when reading tiles.
- cachedTileBuffer - Variable in class loci.formats.tiff.TiffParser
-
Cached tile buffer to avoid re-allocations when reading tiles.
- CacheEvent - Class in loci.formats.cache
-
A event indicating a cache update.
- CacheEvent(Object, int) - Constructor for class loci.formats.cache.CacheEvent
-
Constructs a cache event.
- CacheEvent(Object, int, int) - Constructor for class loci.formats.cache.CacheEvent
-
Constructs a cache event.
- CacheException - Exception in loci.formats.cache
-
CacheException is the exception thrown when something
goes wrong performing a cache operation.
- CacheException() - Constructor for exception loci.formats.cache.CacheException
-
- CacheException(String) - Constructor for exception loci.formats.cache.CacheException
-
- CacheException(String, Throwable) - Constructor for exception loci.formats.cache.CacheException
-
- CacheException(Throwable) - Constructor for exception loci.formats.cache.CacheException
-
- CacheIndicator - Class in loci.formats.gui
-
Indicator GUI component showing which planes are currently in the cache
for a given dimensional axis at a particular dimensional position.
- CacheIndicator(Cache, int) - Constructor for class loci.formats.gui.CacheIndicator
-
Creates a new cache indicator for the given cache.
- CacheIndicator(Cache, int, Component, int, int) - Constructor for class loci.formats.gui.CacheIndicator
-
Creates a new cache indicator.
- CacheListener - Interface in loci.formats.cache
-
A listener for cache updates.
- CacheReporter - Interface in loci.formats.cache
-
Interface for components capable of reporting cache updates.
- CacheSource - Class in loci.formats.cache
-
Superclass of cache sources that retrieve image planes
from a data source (e.g., a file) using Bio-Formats.
- CacheSource(IFormatReader) - Constructor for class loci.formats.cache.CacheSource
-
Constructs a cache source from the given Bio-Formats reader.
- CacheSource(String) - Constructor for class loci.formats.cache.CacheSource
-
Constructs a cache source that draws from the given file.
- CacheStrategy - Class in loci.formats.cache
-
Superclass of cache strategies.
- CacheStrategy(int[]) - Constructor for class loci.formats.cache.CacheStrategy
-
Constructs a cache strategy.
- cacheUpdated(CacheEvent) - Method in interface loci.formats.cache.CacheListener
-
Called when cache is updated.
- cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheComponent
-
Updates GUI to match latest cache state.
- cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheIndicator
-
- CacheUpdater - Class in loci.formats.cache
-
Thread responsible for updating the cache
(loading and dropping planes) in the background.
- CacheUpdater(Cache) - Constructor for class loci.formats.cache.CacheUpdater
-
- calcBasisWaveForms(float[][]) - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Calculates the basis waveform of the first leaf for which the
L2-norm has not been calculated yet.
- calcL2Norms() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Calculates the L2-norm of the sythesis waveforms of every leaf
in the tree.
- calcMaxMagBits(J2KImageWriteParamJava) - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
Calculates the maximum amount of magnitude bits for each
tile-component, and stores it in the 'maxMagBits' array.
- calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Calculates the bitdepths of the transformed components, given the
bitdepth of the un-transformed components and the component
tranformation type.
- calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Calculates the bitdepths of the transformed components, given the
bitdepth of the un-transformed components and the component
tranformation type.
- calcPhotons - Variable in class loci.formats.in.SDTInfo
-
No of photons.
- calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Calculates the parameters of the SubbandAn objects that depend on the
Quantizer.
- calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Calculates the parameters of the SubbandAn objects that depend on the
Quantizer.
- calcSkipMSBP(CBlkWTData, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Calculates the number of magnitude bit-planes that are to be skipped,
because they are non-significant.
- calculateDimensions() - Method in class loci.formats.in.ZeissCZIReader
-
- calculateDimensions(int, boolean) - Method in class loci.formats.in.ZeissCZIReader
-
- CALIBRATION - Static variable in class loci.formats.in.OpenlabReader
-
- calibrationTable - Variable in class loci.plugins.util.BFVirtualStack
-
- calibrationUnit - Variable in class loci.formats.in.TiffReader
-
- Calibrator - Class in loci.plugins.in
-
Logic for calibrating images.
- Calibrator(ImportProcess) - Constructor for class loci.plugins.in.Calibrator
-
- callLegacyReader() - Method in class loci.formats.DelegateReader
-
- CAMERA_GAIN - Static variable in class loci.formats.in.CellSensReader
-
- CAMERA_GAMMA - Static variable in class loci.formats.in.CellSensReader
-
- CAMERA_OFFSET - Static variable in class loci.formats.in.CellSensReader
-
- CAMERA_SERIAL_SETTING - Static variable in class loci.formats.in.FluoviewReader
-
- cameraIDs - Variable in class loci.formats.in.FlexReader
-
- cameraMode - Variable in class loci.formats.in.MicromanagerReader.Position
-
- cameraModel - Variable in class loci.formats.in.ND2Handler
-
- cameraName - Variable in class loci.formats.in.SimplePCITiffReader
-
- cameraName - Variable in class loci.formats.in.SISReader
-
- cameraRef - Variable in class loci.formats.in.MicromanagerReader.Position
-
- cameraRefs - Variable in class loci.formats.in.FlexReader
-
- cameraType - Variable in class loci.formats.in.SimplePCITiffReader
-
- CAN_GROUP - Static variable in class loci.formats.FormatTools
-
- CAN_GROUP - Static variable in interface loci.formats.IFormatReader
-
- canAdjustDimensions - Variable in class loci.formats.in.ND2Handler
-
- cancel - Variable in class loci.plugins.in.ImportProcess
-
Whether the process has been canceled.
- cancel() - Method in class loci.plugins.in.ImportProcess
-
Cancels the import process.
- canceled - Variable in class loci.plugins.LociImporter
-
Flag indicating whether last operation was canceled.
- canceled - Variable in class loci.plugins.Slicer
-
Flag indicating whether last operation was canceled.
- canceled - Variable in class loci.plugins.Updater
-
Flag indicating whether last operation was canceled.
- canChangePattern() - Method in class loci.formats.FileStitcher
-
- canCloseReader - Variable in class loci.formats.gui.ImageViewer
-
- canCreatePalette(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Returns true
if PaletteBuilder is able to create
palette for given image type.
- canCreatePalette(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Returns true
if PaletteBuilder is able to create
palette for given rendered image.
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
-
- canDoQT() - Method in class loci.formats.gui.LegacyQTTools
-
Whether QuickTime is available to this JVM.
- canDoStacks() - Method in class loci.formats.FormatWriter
-
- canDoStacks() - Method in interface loci.formats.IFormatWriter
-
Reports whether the writer can save multiple images to a single file.
- canDoStacks() - Method in class loci.formats.ImageWriter
-
- canDoStacks() - Method in class loci.formats.out.APNGWriter
-
- canDoStacks() - Method in class loci.formats.out.AVIWriter
-
- canDoStacks() - Method in class loci.formats.out.CellH5Writer
-
- canDoStacks() - Method in class loci.formats.out.ICSWriter
-
- canDoStacks() - Method in class loci.formats.out.JavaWriter
-
- canDoStacks() - Method in class loci.formats.out.JPEG2000Writer
-
Overridden to indicate that stacks are not supported.
- canDoStacks() - Method in class loci.formats.out.LegacyQTWriter
-
- canDoStacks() - Method in class loci.formats.out.OMEXMLWriter
-
- canDoStacks() - Method in class loci.formats.out.QTWriter
-
- canDoStacks() - Method in class loci.formats.out.TiffWriter
-
- canDoStacks() - Method in class loci.formats.out.V3DrawWriter
-
- canDoStacks() - Method in class loci.formats.out.WlzWriter
-
- canDoStacks() - Method in class loci.formats.WriterWrapper
-
- canDoUpgradeCheck() - Method in class loci.formats.UpgradeChecker
-
Return whether or not we are ever allowed to perform an upgrade check.
- canEncodeImage(ImageWriter, ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Checks that the provided ImageWriter
can encode
the provided ImageTypeSpecifier
or not.
- canEncodeImage(ImageWriter, ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Checks that the provided ImageWriter
can encode
the provided ColorModel
and SampleModel
.
- canEncodeImage(int, ColorModel, SampleModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- canEncodeImage(int, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
-
- canImport(JComponent, DataFlavor[]) - Method in class loci.plugins.shortcut.ShortcutTransferHandler
-
- canInsertEmpty(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canInsertImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canLookForND - Variable in class loci.formats.in.MetamorphReader
-
- canMerge() - Method in class loci.formats.ChannelMerger
-
Determines whether the channels in the file can be merged.
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat
-
- CANNOT_GROUP - Static variable in class loci.formats.FormatTools
-
- CANNOT_GROUP - Static variable in interface loci.formats.IFormatReader
-
- CANON_TAG - Static variable in class loci.formats.in.DNGReader
-
- CanonRawReader - Class in loci.formats.in
-
CanonRawReader is the file format reader for Canon RAW files.
- CanonRawReader() - Constructor for class loci.formats.in.CanonRawReader
-
Constructs a new Canon RAW reader.
- canParse - Variable in class loci.formats.in.LeicaHandler
-
- canReadAttachments() - Method in class loci.formats.in.ZeissCZIReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- canReplacePixels(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canUseBankDataDirectly(WritableRaster, int, Class<? extends DataBuffer>) - Static method in class loci.formats.gui.AWTImageTools
-
Whether we can return the data buffer's bank data
without performing any copy or conversion operations.
- canUsePrevious - Variable in class loci.formats.in.NativeQTReader
-
Flag indicating whether we can safely use prevPixels.
- CANVAS_COLOR_1 - Static variable in class loci.formats.in.CellSensReader
-
- CANVAS_COLOR_2 - Static variable in class loci.formats.in.CellSensReader
-
- canWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- CAPTURE_EDITOR_DATA - Static variable in class loci.formats.in.NikonReader
-
- CAPTURE_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- cast(Class<?>) - Method in class loci.formats.ClassList
-
Cast the given class to something that extends the base class.
- category - Variable in class loci.formats.in.BaseZeissReader.Tag
-
- category - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling
-
- category - Variable in class loci.formats.in.ZeissTIFFHandler.Tag
-
- causalCXInfo - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Uses vertically stripe causal context formation.
- cb0x - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
The horizontal code-block partition origin
- cb0x - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The horizontal coordinate of the code-block partition origin on the
reference grid
- cb0y - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
The vertical code-block partition origin
- cb0y - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The vertical coordinate of the code-block partition on the reference
grid
- cBegin - Variable in class loci.plugins.in.ImporterOptions
-
- cbI - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Array containing info.
- cbLength - Variable in class jj2000.j2k.codestream.reader.PktInfo
-
The length of the code-block in this packet (in bytes)
- cblk - Variable in class jj2000.j2k.codestream.PrecInfo
-
Code-blocks belonging to this precinct in each subbands of the
resolution level
- CBlkCoordInfo - Class in jj2000.j2k.codestream
-
This class is used to store the coordinates of code-blocks.
- CBlkCoordInfo() - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo
-
Constructor.
- CBlkCoordInfo(int, int) - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo
-
Constructor.
- CBlkInfo - Class in jj2000.j2k.codestream.reader
-
This class contains location of code-blocks' piece of codewords
(there is one piece per layer) and some other information.
- CBlkInfo(int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.reader.CBlkInfo
-
Constructs a new instance with specified number of layers and
code-block coordinates.
- CBlkQuantDataSrcDec - Interface in jj2000.j2k.quantization.dequantizer
-
This interface defines a source of quantized wavelet coefficients and
methods to transfer them in a code-block by code-block basis, fro the
decoder side.
- CBlkQuantDataSrcEnc - Interface in jj2000.j2k.quantization.quantizer
-
This interface defines a source of quantized wavelet coefficients and
methods to transfer them in a code-block by code-block basis.
- CBlkRateDistStats - Class in jj2000.j2k.entropy.encoder
-
This class stores coded (compressed) code-blocks with their associated
rate-distortion statistics.
- CBlkRateDistStats() - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
Creates a new CBlkRateDistStats object without allocating any space for
'truncRates', 'truncSlopes', 'truncDists' and 'truncIdxs' or 'data'.
- CBlkRateDistStats(int, int, int, byte[], int[], double[], boolean[], int, boolean) - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
Creates a new CBlkRateDistStats object and initializes the valid
truncation points, their rates and their slopes, from the 'rates' and
'dist' arrays.
- cblks - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
List of code-blocks found in last read packet head (one list
per subband)
- cblks - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
Code-blocks sizes specification
- cblks - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
5D Array containing all the coded code-blocks:
1st index: tile index
2nd index: component index
3rd index: resolution level index
4th index: subband index
5th index: code-block index
- cblks - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The code-block size specifications
- cblks - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The code-block size specifications
- CBlkSizeSpec - Class in jj2000.j2k.entropy
-
This class extends ModuleSpec class for code-blocks sizes holding purposes.
- CBlkSizeSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec
-
Creates a new CBlkSizeSpec object for the specified number of tiles and
components.
- CBlkSizeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec
-
Creates a new CBlkSizeSpec object for the specified number of tiles and
components and the parameters instance.
- cblkToDecode - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
The total number of code-blocks to decode
- CBlkWTData - Class in jj2000.j2k.wavelet.analysis
-
This is a generic abstract class to store a code-block of wavelet data, be
it quantized or not.
- CBlkWTData() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTData
-
- CBlkWTDataFloat - Class in jj2000.j2k.wavelet.analysis
-
This is an implementation of the 'CBlkWTData' abstract class for 32 bit
floating point data (float).
- CBlkWTDataFloat() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
-
- CBlkWTDataInt - Class in jj2000.j2k.wavelet.analysis
-
This is an implementation of the 'CBlkWTData' abstract class for signed 32
bit integer data.
- CBlkWTDataInt() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
-
- CBlkWTDataSrc - Interface in jj2000.j2k.wavelet.analysis
-
This abstract class defines methods to transfer wavelet data in a
code-block by code-block basis.
- CBlkWTDataSrcDec - Interface in jj2000.j2k.wavelet.synthesis
-
This abstract class defines methods to transfer wavelet data in a
code-block by code-block basis, for the decoder side.
- cbOff - Variable in class jj2000.j2k.codestream.reader.PktInfo
-
The code-block offset in the codestream (for this packet)
- ccb - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
The object where to store the compressed code-block
- CCD_SENSITIVITY - Static variable in class loci.formats.in.CellSensReader
-
- cChoice - Variable in class loci.formats.gui.DataConverter
-
- cChoice - Variable in class loci.plugins.in.SwapDialog
-
- ccoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- ccom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM
-
- cdata - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- cdata - Variable in class loci.formats.in.ZeissTIFFHandler
-
- cdstreamStart - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
- ce - Variable in class jj2000.j2k.entropy.Progression
-
Component index for the end of a progression.
- CELL_LENGTH - Static variable in class loci.formats.tiff.IFD
-
- CELL_WIDTH - Static variable in class loci.formats.tiff.IFD
-
- CellH5Constants() - Constructor for class loci.formats.in.CellH5Reader.CellH5Constants
-
- CellH5Coordinate(String, String, String) - Constructor for class loci.formats.in.CellH5Reader.CellH5Coordinate
-
- CellH5PathsToImageData - Variable in class loci.formats.in.CellH5Reader
-
- CellH5PositionList - Variable in class loci.formats.in.CellH5Reader
-
- CellH5Reader - Class in loci.formats.in
-
Reader for CellH5 (HDF) files.
- CellH5Reader() - Constructor for class loci.formats.in.CellH5Reader
-
Constructs a new CellH5 HDF reader.
- CellH5Reader.CellH5Constants - Class in loci.formats.in
-
- CellH5Reader.CellH5Coordinate - Class in loci.formats.in
-
- CellH5Writer - Class in loci.formats.out
-
CellH5Writer is the file format writer for CellH5 format.
- CellH5Writer() - Constructor for class loci.formats.out.CellH5Writer
-
- CellH5Writer(String, String[]) - Constructor for class loci.formats.out.CellH5Writer
-
- CellLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.CellLength
-
- cellObjectNames - Variable in class loci.formats.in.CellH5Reader
-
- cellomicsPattern - Variable in class loci.formats.in.CellomicsReader
-
- CellomicsReader - Class in loci.formats.in
-
Reader for Cellomics C01 files.
- CellomicsReader() - Constructor for class loci.formats.in.CellomicsReader
-
Constructs a new Cellomics reader.
- CellSensReader - Class in loci.formats.in
-
CellSensReader is the file format reader for cellSens .vsi files.
- CellSensReader() - Constructor for class loci.formats.in.CellSensReader
-
Constructs a new cellSens reader.
- CellSensReader.Pyramid - Class in loci.formats.in
-
- CellSensReader.TileCoordinate - Class in loci.formats.in
-
- CellVoyagerReader - Class in loci.formats.in
-
- CellVoyagerReader() - Constructor for class loci.formats.in.CellVoyagerReader
-
- CellVoyagerReader.AreaInfo - Class in loci.formats.in
-
- CellVoyagerReader.ChannelInfo - Class in loci.formats.in
-
- CellVoyagerReader.FieldInfo - Class in loci.formats.in
-
- CellVoyagerReader.WellInfo - Class in loci.formats.in
-
- CellWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.CellWidth
-
- CellWorxReader - Class in loci.formats.in
-
CellWorxReader is the file format reader for CellWorx .pnl files.
- CellWorxReader() - Constructor for class loci.formats.in.CellWorxReader
-
Constructs a new CellWorx reader.
- cEnd - Variable in class loci.plugins.in.ImporterOptions
-
- CENTERED_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
-
- centerPixelValue - Variable in class loci.formats.in.DicomReader
-
- centerX - Variable in class loci.formats.in.CellVoyagerReader.WellInfo
-
- centerY - Variable in class loci.formats.in.CellVoyagerReader.WellInfo
-
- cepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
-
- certain - Variable in class loci.formats.AxisGuesser
-
Whether the guesser is confident that all axis types are correct.
- certain - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane
-
Certainty flag, for dealing with unspecified NumPlanes.
- cf - Variable in class org.libjpegturbo.turbojpeg.TJTransform
-
Custom filter instance
- CFA_PATTERN - Static variable in class loci.formats.tiff.IFD
-
- CFAPattern() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.CFAPattern
-
- cfaPattern - Variable in class loci.formats.in.DNGReader
-
- cfaPattern - Variable in class loci.formats.in.NikonReader
-
- cfdHF - Variable in class loci.formats.in.SDTInfo
-
- cfdLH - Variable in class loci.formats.in.SDTInfo
-
- cfdLL - Variable in class loci.formats.in.SDTInfo
-
- cfdZC - Variable in class loci.formats.in.SDTInfo
-
- CFG_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- CFG_SUFFIX - Static variable in class loci.formats.in.PrairieReader
-
- cfgFile - Variable in class loci.formats.in.PrairieReader
-
The associated XML files.
- CHAINED_LAYERS - Static variable in class loci.formats.in.CellSensReader
-
- chan - Variable in class loci.formats.in.SDTInfo
-
Routing channel number.
- CHANDESC - Static variable in class loci.formats.in.LeicaReader
-
- changedUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets
-
- changeOutputFile(String) - Method in class loci.formats.FormatWriter
-
- changeOutputFile(String) - Method in interface loci.formats.IFormatWriter
-
Switch the output file for the current dataset.
- changeOutputFile(String) - Method in class loci.formats.ImageWriter
-
- changeOutputFile(String) - Method in class loci.formats.WriterWrapper
-
- changingElemSize - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- chanMax - Variable in class loci.formats.MinMaxCalculator
-
Max values for each channel.
- chanMin - Variable in class loci.formats.MinMaxCalculator
-
Min values for each channel.
- channel - Variable in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
The FileChannel
data source.
- channel - Variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
The FileChannel
data destination.
- CHANNEL - Static variable in class loci.formats.FormatTools
-
Identifies the Channel dimensional type,
representing a generic channel dimension.
- channel - Variable in class loci.formats.in.ColumbusReader.Plane
-
- Channel() - Constructor for class loci.formats.in.LeicaHandler.Channel
-
- channel - Variable in class loci.formats.in.LeicaHandler.Detector
-
- channel - Variable in class loci.formats.in.LeicaHandler.MultiBand
-
- Channel() - Constructor for class loci.formats.in.OIRReader.Channel
-
- channel - Variable in class loci.formats.in.PrairieMetadata.PFile
-
channel
of this <File>
.
- channel - Variable in class loci.formats.in.SPCReader
-
- Channel() - Constructor for class loci.formats.in.ZeissCZIReader.Channel
-
- Channel(int) - Constructor for class loci.formats.in.ZeissTIFFReader.Channel
-
- CHANNEL_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_AMPLIFIER_GAIN - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_CONTRAST_BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_COUNT_TAG - Static variable in class loci.formats.in.FlowSightReader
-
- CHANNEL_DEFINITION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CHANNEL_DESCS_TAG - Static variable in class loci.formats.in.FlowSightReader
-
- CHANNEL_DETECTOR_GAIN - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_DIM - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_FILTER - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_FILTER_SET - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_GAMMA_CORRECTION - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_INFO_PROPERTIES - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_NAME - Static variable in class loci.formats.FormatTools
-
- CHANNEL_NAME - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_NAME - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_NAMES_TAG - Static variable in class loci.formats.in.FlowSightReader
-
- CHANNEL_NUM - Static variable in class loci.formats.FormatTools
-
- CHANNEL_OVERFLOW - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_PINHOLE_DIAMETER - Static variable in class loci.formats.in.ZeissLSMReader
-
- CHANNEL_PRIORITIES - Static variable in class loci.formats.in.LIFReader
-
- CHANNEL_PROPERTIES - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_TAG - Static variable in class loci.formats.in.SlidebookTiffReader
-
- CHANNEL_TRANSPARENCY_VALUE - Static variable in class loci.formats.in.CellSensReader
-
- CHANNEL_VISIBLE - Static variable in class loci.formats.in.CellSensReader
-
- channelColor - Variable in class loci.formats.in.ColumbusReader.Plane
-
- channelColor - Variable in class loci.formats.in.LeicaReader
-
- channelColor - Variable in class loci.formats.in.ZeissLSMReader
-
- channelColors - Variable in class loci.formats.in.BaseZeissReader
-
- channelColors - Variable in class loci.formats.in.ImprovisionTiffReader
-
- channelColors - Variable in class loci.formats.in.NativeND2Reader
-
- ChannelData() - Constructor for class loci.formats.in.FV1000Reader.ChannelData
-
- ChannelDefinitionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is designed to represent a Channel Definition Box of
JPEG JP2 file format.
- ChannelDefinitionBox(ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox
based on the provided
ColorModel
.
- ChannelDefinitionBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox
based on the provided
content in byte array.
- ChannelDefinitionBox(short[], short[], short[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox
based on the provided
channel definitions.
- ChannelDefinitionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox
based on the provided
org.w3c.dom.Node
.
- channelDescs - Variable in class loci.formats.in.FlowSightReader
-
- ChannelFiller - Class in loci.formats
-
For indexed color data representing true color, factors out
the indices, replacing them with the color table values directly.
- ChannelFiller() - Constructor for class loci.formats.ChannelFiller
-
Constructs a ChannelFiller around a new image reader.
- ChannelFiller(IFormatReader) - Constructor for class loci.formats.ChannelFiller
-
Constructs a ChannelFiller with a given reader.
- channelFiller - Variable in class loci.plugins.in.ImportProcess
-
- channelId - Variable in class loci.formats.in.OIRReader.Detector
-
- ChannelImageInputStreamSpi - Class in com.sun.media.imageioimpl.stream
-
- ChannelImageInputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
-
- ChannelImageOutputStreamSpi - Class in com.sun.media.imageioimpl.stream
-
- ChannelImageOutputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
-
- channelIndices - Variable in class loci.formats.in.BaseZeissReader
-
- ChannelInfo() - Constructor for class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- channelInfos - Variable in class loci.formats.in.CellVoyagerReader
-
- channelLengths - Variable in class loci.formats.in.ICSReader
-
The length of each channel axis.
- channelMap - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- channelMax - Variable in class loci.formats.in.ImarisHDFReader
-
- ChannelMerger - Class in loci.formats
-
Logic to automatically merge channels in a file.
- ChannelMerger() - Constructor for class loci.formats.ChannelMerger
-
Constructs a ChannelMerger around a new image reader.
- ChannelMerger(IFormatReader) - Constructor for class loci.formats.ChannelMerger
-
Constructs a ChannelMerger with the given reader.
- channelMin - Variable in class loci.formats.in.ImarisHDFReader
-
- channelName - Variable in class loci.formats.in.BaseZeissReader
-
- channelName - Variable in class loci.formats.in.ColumbusReader.Plane
-
- channelName - Variable in class loci.formats.in.ImarisHDFReader
-
- channelName - Variable in class loci.formats.in.MetamorphHandler
-
- channelName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- channelName - Variable in class loci.formats.in.OperettaReader.Plane
-
- channelName - Variable in class loci.formats.in.PrairieMetadata.PFile
-
channelName
attribute of this <File>
.
- channelName - Variable in class loci.formats.in.SISReader
-
- channelName - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel
-
- channelNames - Variable in class loci.formats.in.BDReader
-
- channelNames - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- channelNames - Variable in class loci.formats.in.FlexReader
-
- channelNames - Variable in class loci.formats.in.FlowSightReader
-
- channelNames - Variable in class loci.formats.in.FluoviewReader
-
- channelNames - Variable in class loci.formats.in.InCellReader
-
- channelNames - Variable in class loci.formats.in.LeicaReader
-
- channelNames - Variable in class loci.formats.in.LIFReader
-
- channelNames - Variable in class loci.formats.in.MetamorphHandler
-
- channelNames - Variable in class loci.formats.in.ND2Handler
-
- channelNames - Variable in class loci.formats.in.ScanrReader
-
- channelNames - Variable in class loci.formats.in.SlidebookTiffReader
-
- channelNames - Variable in class loci.formats.in.VolocityReader.Stack
-
- channelNames - Variable in class loci.formats.in.ZeissLSMReader
-
- channelNumber - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- channelNumber - Variable in class loci.plugins.util.RecordedImageProcessor
-
- channelOrder - Variable in class loci.formats.in.PhotoshopTiffReader
-
- channels - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
- channels - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Channel definitions
- channels - Variable in class loci.formats.codec.CodecOptions
-
Number of channels.
- channels - Variable in class loci.formats.in.FV1000Reader
-
- channels - Variable in class loci.formats.in.LeicaHandler
-
- channels - Variable in class loci.formats.in.LiFlimReader
-
- channels - Variable in class loci.formats.in.MicromanagerReader.Position
-
- channels - Variable in class loci.formats.in.OIRReader
-
- channels - Variable in class loci.formats.in.PrairieReader
-
List of active channels.
- channels - Variable in class loci.formats.in.SDTInfo
-
- channels - Variable in class loci.formats.in.SDTReader
-
Number of spectral channels.
- channels - Variable in class loci.formats.in.TextReader
-
List of channel labels.
- channels - Variable in class loci.formats.in.ZeissCZIReader
-
- channels - Variable in class loci.formats.in.ZeissTIFFReader
-
- ChannelSeparator - Class in loci.formats
-
Logic to automatically separate the channels in a file.
- ChannelSeparator() - Constructor for class loci.formats.ChannelSeparator
-
Constructs a ChannelSeparator around a new image reader.
- ChannelSeparator(IFormatReader) - Constructor for class loci.formats.ChannelSeparator
-
Constructs a ChannelSeparator with the given reader.
- channelSeparator - Variable in class loci.plugins.in.ImportProcess
-
- channelsPerTimepoint - Variable in class loci.formats.in.InCellReader
-
- channelTypes - Variable in class loci.formats.in.ICSReader
-
The type of each channel axis.
- channelWavelengths - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- CHAR - Static variable in class loci.formats.in.CellSensReader
-
- CHAR - Static variable in class loci.formats.in.GatanReader
-
- characterCellHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- characterCellWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- characters(char[], int, int) - Method in class loci.formats.in.AFIReader.AFIHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.BioRadSCNReader.SCNHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.FEITiffReader.FEIHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.FlexReader.FlexHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.ImaconReader.ImaconHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.InCellReader.InCellHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.IvisionReader.IvisionHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.ScanrReader.ScanrHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.ZeissTIFFHandler
-
- characters(char[], int, int) - Method in class loci.formats.out.OMEXMLWriter.OMEHandler
-
- charData - Variable in class loci.formats.in.FlexReader.FlexHandler
-
- CHARS - Static variable in class loci.formats.tools.AsciiImage
-
- Charset(int, String) - Constructor for enum loci.formats.in.BaseZeissReader.Charset
-
- charset - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- CHECK - Static variable in class loci.formats.in.ZeissLMSReader
-
- checkBufferSize(IFormatReader, int) - Static method in class loci.formats.FormatTools
-
- checkBufferSize(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools
-
Checks that the given buffer size is large enough to hold a w * h
image as returned by the given reader.
- checkBytePadding() - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput
-
Checks for past errors in the decoding process by verifying the byte
padding with an alternating sequence of 0's and 1's.
- checkClass(String) - Static method in class loci.plugins.util.LibraryChecker
-
Checks whether the given class is available.
- checkClassDependency(Class<? extends Object>) - Method in class loci.formats.services.WlzServiceImpl
-
- checkCommentImageJ(String) - Method in class loci.formats.in.TiffReader
-
- checkCommentMetamorph(String) - Method in class loci.formats.in.TiffReader
-
- checkElement(Element, String) - Method in class loci.formats.in.PrairieMetadata
-
Checks that the given element has the specified name.
- checkEndOfPassFF(byte[], int[], boolean[], int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Ensures that at the end of a non-terminated coding pass there is not a
0xFF byte, modifying the stored rates if necessary.
- checkHeader() - Method in class loci.formats.tiff.TiffParser
-
Checks the TIFF header.
- checkImageJ() - Static method in class loci.plugins.util.LibraryChecker
-
Checks whether ImageJ is new enough for the Bio-Formats plugins.
- checkImageJ(String, String) - Static method in class loci.plugins.util.LibraryChecker
-
Returns true the current ImageJ version is greater than or equal to the
specified version.
- checkImageJ(String, String, String) - Static method in class loci.plugins.util.LibraryChecker
-
Returns true the current ImageJ version is greater than or equal to the
specified version.
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- checkIndex(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- checkJava() - Static method in class loci.plugins.util.LibraryChecker
-
Checks for a new enough version of the Java Runtime Environment.
- checkKey(String, String) - Method in class loci.formats.in.MetamorphHandler
-
Check if the value needs to be saved.
- checkKey(String, String) - Method in class loci.plugins.in.ImporterOptions
-
Tests whether the given boolean key is set in the specified options.
- checkLatest(String, String) - Static method in class loci.plugins.config.InstallWizard
-
- checkLibrary() - Static method in class jj2000.j2k.util.NativeServices
-
Checks if the library SHLIB_NAME is already loaded and attempts to load
if not yet loaded.
- checkLibrary(LibraryChecker.Library, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
-
Checks for a required library.
- checkLibrary(String, String, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
-
Checks whether the given class is available; if not,
adds the specified JAR file name to the hash set
(presumably to report it missing to the user).
- checkMarkerLength(DataInputStream, String) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Checks that the marker segment length is correct.
- checkMissing(HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
-
Reports missing libraries in the given hash set to the user.
- checkObsoleteOptions() - Method in class loci.plugins.in.ImporterOptions
-
Handles obsolete macro keys, for backward compatibility.
- checkParams(int, byte[], int, int, int, int) - Method in class loci.formats.FormatWriter
-
Ensure that the arguments that are being passed to saveBytes(...) are
valid.
- checkParams - Variable in class loci.formats.out.TiffWriter
-
Whether or not to check the parameters passed to saveBytes.
- checkParamsEmpty(ImageTypeSpecifier, int, int, List) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- checkPerformed - Static variable in class loci.plugins.in.UpgradeDialog
-
Whether an upgrade check has already been performed this session.
- checkPlaneNumber(IFormatReader, int) - Static method in class loci.formats.FormatTools
-
Checks that the given plane number is valid for the given reader.
- checkPlaneParameters(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Convenience method for checking that the plane number, tile size and
buffer sizes are all valid for the given reader.
- checkPoints(int) - Method in enum loci.formats.in.BaseZeissReader.FeatureType
-
- checkPredTerm() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
Checks for past errors in the decoding process using the predictable
error resilient termination.
- checkProgMode(String) - Method in class jj2000.j2k.entropy.ProgressionSpec
-
Check if the progression mode exists and if so, return its integer
value.
- checkQTLibrary() - Method in class loci.formats.gui.LegacyQTTools
-
Checks whether QTJava is available, throwing an exception if not.
- checkReadParamBandSettingsWrapper(ImageReadParam, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Wrapper for the protected method checkReadParamBandSettings
.
- checkSampleModel(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- checkSampleModel(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- checkSuffix(String, String) - Static method in class loci.formats.FormatHandler
-
Performs suffix matching for the given filename.
- checkSuffix(String, String[]) - Static method in class loci.formats.FormatHandler
-
Performs suffix matching for the given filename.
- checkTargetErrors() - Method in class jj2000.j2k.util.ThreadPool
-
Checks that no error or runtime exception in any target have occurred
so far.
- checkTileSize(IFormatReader, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Checks that the given tile size is valid for the given reader.
- checkTime(long, int, long, long) - Method in class loci.formats.in.TextReader
-
- checkUnit(String, String...) - Method in class loci.formats.in.ICSReader
-
Verifies that a unit matches the expected value.
- checkUUIDInfoBox(Node, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
Check whether the child with a name childName
exists.
- childCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- childNames - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo
-
- childPolicy - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo
-
- children - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- CHIP_SIZE_X - Static variable in class loci.formats.in.FluoviewReader
-
- CHIP_SIZE_Y - Static variable in class loci.formats.in.FluoviewReader
-
- chksum - Variable in class loci.formats.in.SDTInfo
-
- CHROMA_SUBSAMPLING - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor
-
- chromaSubsampleH - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- chromaSubsampleV - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- CHUNK_SIZE - Static variable in class loci.formats.UpgradeChecker
-
Number of bytes to read from the CI server at a time.
- ChunkMapEntry() - Constructor for class loci.formats.in.NativeND2Reader.ChunkMapEntry
-
- chunkSizes - Variable in class loci.formats.in.NativeQTReader
-
Number of bytes in each plane.
- CI_SERVER - Static variable in class loci.formats.UpgradeChecker
-
Location of the OME continuous integration server.
- cIndex - Variable in class loci.formats.in.BaseZeissReader
-
- cIndex - Variable in class loci.plugins.util.DataBrowser
-
- CIRCLE - Static variable in class loci.formats.in.FV1000Reader
-
- CIRCLE - Static variable in class loci.formats.in.ZeissLSMReader
-
- CIRCLE_3POINT - Static variable in class loci.formats.in.ZeissLSMReader
-
- cLabel - Variable in class loci.formats.gui.DataConverter
-
- clamp(float) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- clamp(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- clamp2(float) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- CLASS_IMAGE_5D - Static variable in class loci.plugins.in.ImporterOptions
-
- CLASS_LABELS - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- CLASS_VIEW_5D - Static variable in class loci.plugins.in.ImporterOptions
-
- classes - Variable in class loci.formats.ClassList
-
List of classes.
- classes - Variable in class loci.formats.in.CellH5Reader
-
- ClassList<T> - Class in loci.formats
-
ClassList is a list of classes for use with
ImageReader
or
ImageWriter
, parsed from a configuration file such as readers.txt
or writers.txt.
- ClassList(Class<T>) - Constructor for class loci.formats.ClassList
-
Constructs a list of classes, initially empty.
- ClassList(String, Class<T>) - Constructor for class loci.formats.ClassList
-
Constructs a list of classes from the given configuration file.
- ClassList(String, Class<T>, Class<?>) - Constructor for class loci.formats.ClassList
-
Constructs a list of classes from the given configuration file.
- classList - Variable in class loci.formats.FileStitcher
-
- CLEAN_FAX_DATA_ERRORS_CORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
A value to be used with the "CleanFaxData" tag.
- CLEAN_FAX_DATA_ERRORS_UNCORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
A value to be used with the "CleanFaxData" tag.
- CLEAN_FAX_DATA_NO_ERRORS - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
A value to be used with the "CleanFaxData" tag.
- CleanFaxData() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet.CleanFaxData
-
- cleanup() - Method in class loci.formats.Memoizer
-
- cleanuppass(DataBlk, MQDecoder, int, int[], int[], boolean) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Performs the cleanup pass on the specified data and bit-plane.
- cleanuppass(CBlkWTData, MQCoder, boolean, int, int[], int[], int[], int[], int[], int[], int, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Performs the cleanup pass on the specified data and bit-plane.
- clear() - Method in class loci.formats.codec.ByteVector
-
- CLEAR_CODE - Static variable in class loci.formats.codec.LZWCodec
-
- clearCode_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor
-
reserved clear code based on code size
- clearDestImage() - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- clearSeries() - Method in class loci.plugins.in.ImporterOptions
-
- ClearTable(int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
-
- clearTargetErrors() - Method in class jj2000.j2k.util.ThreadPool
-
Clears the current target error conditions, if any.
- clearXML() - Method in class loci.formats.in.ZeissCZIReader.Metadata
-
- clength - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
Length of codestream
- cLengths - Variable in class loci.plugins.util.DataBrowser
-
- clip(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- clip(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- clipDestination(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- CLIPPING - Static variable in class loci.formats.in.CellSensReader
-
- CLIPPING_MAGIC_STRING - Static variable in class loci.formats.in.VolocityClippingReader
-
- CLIPPING_STATE - Static variable in class loci.formats.in.CellSensReader
-
- clippingData - Variable in class loci.formats.in.VolocityReader.Stack
-
- CLOCKWISE - Static variable in class loci.formats.in.FluoviewReader
-
- clone() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Clones the directory and all the fields contained therein.
- clone() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- clone() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- clone() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- clone() - Method in class jj2000.j2k.ModuleSpec
-
- clone() - Method in class loci.formats.CoreMetadata
-
- clone(IFormatReader, int) - Method in class loci.formats.CoreMetadata
-
- clone() - Method in class loci.formats.SwappableMetadata
-
- clone(IFormatReader, int) - Method in class loci.formats.SwappableMetadata
-
- cloneImageReadParam(ImageReadParam, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
Creates a copy of param
.
- cloneNode(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- close() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
Invokes the superclass method and sets the internal reference
to the source FileChannel
to null
.
- close() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
Invokes the superclass method, writes any unwritten data, and
sets the internal reference to the source FileChannel
to null
.
- close() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- close() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
-
- close() - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter
-
- close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
- close() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Closes the underlying resource (file, stream, network connection,
etc.).
- close() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Writes the EOC marker and closes the underlying stream.
- close() - Method in class jj2000.j2k.image.input.ImgReader
-
Closes the underlying file or network connection from where the
image data is being read.
- close() - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Closes the underlying RandomAccessFile from where the image data is
being read.
- close() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Closes the buffered random access file
- close() - Method in interface jj2000.j2k.io.RandomAccessIO
-
Closes the I/O stream.
- close() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Closes this object for reading as well as the wrapped InputStream, if
not already closed.
- close(boolean) - Method in class loci.formats.ChannelSeparator
-
- close() - Method in class loci.formats.codec.JPEGTileDecoder
-
- close(boolean) - Method in class loci.formats.DelegateReader
-
- close() - Method in class loci.formats.FileStitcher
-
- close(boolean) - Method in class loci.formats.FileStitcher
-
- close(boolean) - Method in class loci.formats.FormatReader
-
- close() - Method in class loci.formats.FormatReader
-
- close() - Method in class loci.formats.FormatWriter
-
- close() - Method in class loci.formats.gui.PreviewPane
-
Closes the underlying image reader.
- close(boolean) - Method in interface loci.formats.IFormatReader
-
Closes the currently open file.
- close(boolean) - Method in class loci.formats.ImageReader
-
- close() - Method in class loci.formats.ImageReader
-
- close() - Method in class loci.formats.ImageWriter
-
- close(boolean) - Method in class loci.formats.in.AFIReader
-
- close(boolean) - Method in class loci.formats.in.AIMReader
-
- close(boolean) - Method in class loci.formats.in.AliconaReader
-
- close(boolean) - Method in class loci.formats.in.AmiraReader
-
- close(boolean) - Method in class loci.formats.in.AnalyzeReader
-
- close(boolean) - Method in class loci.formats.in.APLReader
-
- close(boolean) - Method in class loci.formats.in.APNGReader
-
- close(boolean) - Method in class loci.formats.in.AVIReader
-
- close(boolean) - Method in class loci.formats.in.BaseZeissReader
-
- close(boolean) - Method in class loci.formats.in.BDReader
-
- close(boolean) - Method in class loci.formats.in.BioRadReader
-
- close(boolean) - Method in class loci.formats.in.BioRadSCNReader
-
- close(boolean) - Method in class loci.formats.in.BMPReader
-
- close(boolean) - Method in class loci.formats.in.BrukerReader
-
- close(boolean) - Method in class loci.formats.in.BurleighReader
-
- close(boolean) - Method in class loci.formats.in.CanonRawReader
-
- close(boolean) - Method in class loci.formats.in.CellH5Reader
-
- close(boolean) - Method in class loci.formats.in.CellomicsReader
-
- close(boolean) - Method in class loci.formats.in.CellSensReader
-
- close(boolean) - Method in class loci.formats.in.CellWorxReader
-
- close(boolean) - Method in class loci.formats.in.ColumbusReader
-
- close(boolean) - Method in class loci.formats.in.DeltavisionReader
-
- close(boolean) - Method in class loci.formats.in.DicomReader
-
- close(boolean) - Method in class loci.formats.in.DNGReader
-
- close(boolean) - Method in class loci.formats.in.EPSReader
-
- close(boolean) - Method in class loci.formats.in.FakeReader
-
- close(boolean) - Method in class loci.formats.in.FEIReader
-
- close(boolean) - Method in class loci.formats.in.FEITiffReader
-
- close(boolean) - Method in class loci.formats.in.FilePatternReader
-
- close() - Method in class loci.formats.in.FilePatternReader
-
- close(boolean) - Method in class loci.formats.in.FitsReader
-
- close(boolean) - Method in class loci.formats.in.FlexReader
-
- close(boolean) - Method in class loci.formats.in.FlowSightReader
-
- close(boolean) - Method in class loci.formats.in.FluoviewReader
-
- close(boolean) - Method in class loci.formats.in.FujiReader
-
- close(boolean) - Method in class loci.formats.in.FV1000Reader
-
- close(boolean) - Method in class loci.formats.in.GatanDM2Reader
-
- close(boolean) - Method in class loci.formats.in.GatanReader
-
- close(boolean) - Method in class loci.formats.in.GIFReader
-
- close(boolean) - Method in class loci.formats.in.HamamatsuVMSReader
-
- close(boolean) - Method in class loci.formats.in.HitachiReader
-
- close(boolean) - Method in class loci.formats.in.HRDGDFReader
-
- close(boolean) - Method in class loci.formats.in.ICSReader
-
- close(boolean) - Method in class loci.formats.in.IM3Reader
-
- close(boolean) - Method in class loci.formats.in.ImaconReader
-
- close(boolean) - Method in class loci.formats.in.ImageIOReader
-
- close(boolean) - Method in class loci.formats.in.ImagicReader
-
- close(boolean) - Method in class loci.formats.in.ImarisHDFReader
-
- close(boolean) - Method in class loci.formats.in.ImarisReader
-
- close(boolean) - Method in class loci.formats.in.IMODReader
-
- close(boolean) - Method in class loci.formats.in.ImprovisionTiffReader
-
- close(boolean) - Method in class loci.formats.in.ImspectorReader
-
- close(boolean) - Method in class loci.formats.in.InCell3000Reader
-
- close(boolean) - Method in class loci.formats.in.InCellReader
-
- close(boolean) - Method in class loci.formats.in.InveonReader
-
- close(boolean) - Method in class loci.formats.in.IPLabReader
-
- close(boolean) - Method in class loci.formats.in.IPWReader
-
- close(boolean) - Method in class loci.formats.in.IvisionReader
-
- close(boolean) - Method in class loci.formats.in.JEOLReader
-
- close(boolean) - Method in class loci.formats.in.JPEG2000Reader
-
- close(boolean) - Method in class loci.formats.in.JPEGReader
-
- close(boolean) - Method in class loci.formats.in.JPXReader
-
- close(boolean) - Method in class loci.formats.in.KhorosReader
-
- close(boolean) - Method in class loci.formats.in.KodakReader
-
- close(boolean) - Method in class loci.formats.in.L2DReader
-
- close(boolean) - Method in class loci.formats.in.LegacyQTReader
-
- close(boolean) - Method in class loci.formats.in.LeicaReader
-
- close(boolean) - Method in class loci.formats.in.LeicaSCNReader
-
- close(boolean) - Method in class loci.formats.in.LiFlimReader
-
- close(boolean) - Method in class loci.formats.in.LIFReader
-
- close(boolean) - Method in class loci.formats.in.LIMReader
-
- close(boolean) - Method in class loci.formats.in.MetamorphReader
-
- close(boolean) - Method in class loci.formats.in.MetamorphTiffReader
-
- close(boolean) - Method in class loci.formats.in.MIASReader
-
- close(boolean) - Method in class loci.formats.in.MicromanagerReader
-
- close(boolean) - Method in class loci.formats.in.MINCReader
-
- close(boolean) - Method in class loci.formats.in.MinimalTiffReader
-
- close(boolean) - Method in class loci.formats.in.MNGReader
-
- close(boolean) - Method in class loci.formats.in.MolecularImagingReader
-
- close(boolean) - Method in class loci.formats.in.MRCReader
-
- close(boolean) - Method in class loci.formats.in.MRWReader
-
- close(boolean) - Method in class loci.formats.in.NAFReader
-
- close(boolean) - Method in class loci.formats.in.NativeND2Reader
-
- close(boolean) - Method in class loci.formats.in.NativeQTReader
-
- close(boolean) - Method in class loci.formats.in.NDPIReader
-
- close(boolean) - Method in class loci.formats.in.NDPISReader
-
- close(boolean) - Method in class loci.formats.in.NiftiReader
-
- close(boolean) - Method in class loci.formats.in.NikonElementsTiffReader
-
- close(boolean) - Method in class loci.formats.in.NikonReader
-
- close(boolean) - Method in class loci.formats.in.NikonTiffReader
-
- close(boolean) - Method in class loci.formats.in.NRRDReader
-
- close(boolean) - Method in class loci.formats.in.OBFReader
-
- close(boolean) - Method in class loci.formats.in.OIRReader
-
- close(boolean) - Method in class loci.formats.in.OMETiffReader
-
- close(boolean) - Method in class loci.formats.in.OMEXMLReader
-
- close(boolean) - Method in class loci.formats.in.OpenlabRawReader
-
- close(boolean) - Method in class loci.formats.in.OpenlabReader
-
- close(boolean) - Method in class loci.formats.in.OperettaReader
-
- close(boolean) - Method in class loci.formats.in.PCIReader
-
- close(boolean) - Method in class loci.formats.in.PCORAWReader
-
- close(boolean) - Method in class loci.formats.in.PCXReader
-
- close(boolean) - Method in class loci.formats.in.PDSReader
-
- close(boolean) - Method in class loci.formats.in.PerkinElmerReader
-
- close(boolean) - Method in class loci.formats.in.PGMReader
-
- close(boolean) - Method in class loci.formats.in.PhotoshopTiffReader
-
- close(boolean) - Method in class loci.formats.in.PictReader
-
- close(boolean) - Method in class loci.formats.in.PQBinReader
-
- close(boolean) - Method in class loci.formats.in.PrairieReader
-
- close(boolean) - Method in class loci.formats.in.PSDReader
-
- close(boolean) - Method in class loci.formats.in.QuesantReader
-
- close(boolean) - Method in class loci.formats.in.RHKReader
-
- close(boolean) - Method in class loci.formats.in.SBIGReader
-
- close(boolean) - Method in class loci.formats.in.ScanrReader
-
- close(boolean) - Method in class loci.formats.in.ScreenReader
-
- close(boolean) - Method in class loci.formats.in.SDTReader
-
- close(boolean) - Method in class loci.formats.in.SIFReader
-
- close(boolean) - Method in class loci.formats.in.SimplePCITiffReader
-
- close(boolean) - Method in class loci.formats.in.SISReader
-
- close(boolean) - Method in class loci.formats.in.SlidebookReader
-
- close(boolean) - Method in class loci.formats.in.SlidebookTiffReader
-
- close(boolean) - Method in class loci.formats.in.SPCReader
-
- close(boolean) - Method in class loci.formats.in.SPEReader
-
- close(boolean) - Method in class loci.formats.in.SpiderReader
-
- close(boolean) - Method in class loci.formats.in.SVSReader
-
- close(boolean) - Method in class loci.formats.in.TargaReader
-
- close(boolean) - Method in class loci.formats.in.TCSReader
-
- close(boolean) - Method in class loci.formats.in.TextReader
-
- close(boolean) - Method in class loci.formats.in.TiffReader
-
- close(boolean) - Method in class loci.formats.in.TileJPEGReader
-
- close(boolean) - Method in class loci.formats.in.TillVisionReader
-
- close(boolean) - Method in class loci.formats.in.TopometrixReader
-
- close(boolean) - Method in class loci.formats.in.TrestleReader
-
- close(boolean) - Method in class loci.formats.in.UBMReader
-
- close(boolean) - Method in class loci.formats.in.UnisokuReader
-
- close(boolean) - Method in class loci.formats.in.VarianFDFReader
-
- close(boolean) - Method in class loci.formats.in.VeecoReader
-
- close(boolean) - Method in class loci.formats.in.VisitechReader
-
- close(boolean) - Method in class loci.formats.in.VolocityClippingReader
-
- close(boolean) - Method in class loci.formats.in.VolocityReader
-
- close(boolean) - Method in class loci.formats.in.WlzReader
-
- close(boolean) - Method in class loci.formats.in.ZeissCZIReader
-
- close() - Method in class loci.formats.in.ZeissCZIReader.Segment
-
- close(boolean) - Method in class loci.formats.in.ZeissLMSReader
-
- close(boolean) - Method in class loci.formats.in.ZeissLSMReader
-
- close(boolean) - Method in class loci.formats.in.ZeissTIFFReader
-
- close(boolean) - Method in class loci.formats.in.ZeissZVIReader
-
- close(boolean) - Method in class loci.formats.in.ZipReader
-
- close() - Method in class loci.formats.Memoizer
-
- close(boolean) - Method in class loci.formats.Memoizer
-
- close() - Method in interface loci.formats.Memoizer.Deser
-
- close() - Method in class loci.formats.Memoizer.KryoDeser
-
- close(boolean) - Method in class loci.formats.MinMaxCalculator
-
- close() - Method in class loci.formats.out.APNGWriter
-
- close() - Method in class loci.formats.out.AVIWriter
-
- close() - Method in class loci.formats.out.CellH5Writer
-
- close() - Method in class loci.formats.out.ICSWriter
-
- close() - Method in class loci.formats.out.JavaWriter
-
- close() - Method in class loci.formats.out.LegacyQTWriter
-
- close() - Method in class loci.formats.out.OMETiffWriter
-
- close() - Method in class loci.formats.out.OMEXMLWriter
-
- close() - Method in class loci.formats.out.QTWriter
-
- close() - Method in class loci.formats.out.TiffWriter
-
- close() - Method in class loci.formats.out.V3DrawWriter
-
- close() - Method in class loci.formats.out.WlzWriter
-
- close(boolean) - Method in class loci.formats.ReaderWrapper
-
- close() - Method in class loci.formats.ReaderWrapper
-
- close() - Method in interface loci.formats.services.EXIFService
-
- close() - Method in class loci.formats.services.EXIFServiceImpl
-
- close() - Method in interface loci.formats.services.JHDFService
-
Closes and resets the service.
- close() - Method in class loci.formats.services.JHDFServiceImpl
-
- close() - Method in interface loci.formats.services.JPEGTurboService
-
- close() - Method in class loci.formats.services.JPEGTurboServiceImpl
-
- close() - Method in interface loci.formats.services.MDBService
-
Close the currently initialized file.
- close() - Method in class loci.formats.services.MDBServiceImpl
-
- close() - Method in interface loci.formats.services.MetakitService
-
- close() - Method in class loci.formats.services.MetakitServiceImpl
-
- close() - Method in interface loci.formats.services.NetCDFService
-
Closes and resets the service.
- close() - Method in class loci.formats.services.NetCDFServiceImpl
-
- close() - Method in interface loci.formats.services.POIService
-
Close the current POI file system.
- close() - Method in class loci.formats.services.POIServiceImpl
-
- close() - Method in interface loci.formats.services.WlzService
-
Closes the file.
- close() - Method in class loci.formats.services.WlzServiceImpl
-
- close() - Method in class loci.formats.tiff.OnDemandLongArray
-
- close() - Method in class loci.formats.tiff.TiffSaver
-
Closes the output stream if not null.
- close() - Method in class loci.formats.WriterWrapper
-
- close() - Method in class loci.plugins.config.TextAreaWriter
-
Closing a TextAreaWriter does nothing.
- close() - Method in class loci.plugins.macro.LociFunctions
-
- close() - Method in class loci.plugins.util.VirtualImagePlus
-
- close() - Method in class loci.plugins.util.VirtualReader
-
- close() - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Free the native structures associated with this compressor instance.
- close() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Free the native structures associated with this decompressor instance.
- CLOSED_ARROW - Static variable in class loci.formats.in.ZeissLSMReader
-
- CLOSED_BEZIER - Static variable in class loci.formats.in.ZeissLSMReader
-
- CLOSED_POLYLINE - Static variable in class loci.formats.in.ZeissLSMReader
-
- closeFileOnly() - Method in class loci.plugins.macro.LociFunctions
-
- cm - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- cm - Variable in class loci.formats.FormatWriter
-
Default color model.
- cNames - Variable in class loci.formats.in.ImprovisionTiffReader
-
- co - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- co2Percent - Variable in class loci.formats.in.ZeissCZIReader
-
- COARSE_FRAME_IFD - Static variable in class loci.formats.in.CellSensReader
-
- COARSE_PYRAMID_LEVEL - Static variable in class loci.formats.in.CellSensReader
-
- coc - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the COC marker segments found in main and first tile-part
header.
- COC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COC
-
- COC - Static variable in interface jj2000.j2k.codestream.Markers
-
Coding style component (COC): 0xFF53
- COC_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for COC marker segment found
- cod - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the COD marker segments found in main and first tile-part
header.
- COD() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COD
-
- COD - Static variable in interface jj2000.j2k.codestream.Markers
-
Coding style default (COD): 0xFF52
- COD_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for COD marker segment found
- code - Variable in enum loci.formats.codec.CompressionType
-
Code for the compression.
- code - Variable in enum loci.formats.codec.JPEG2000BoxType
-
Code for the box type.
- code - Variable in enum loci.formats.codec.JPEG2000SegmentMarker
-
Code for the segment marker.
- code - Variable in class loci.formats.in.FV1000Reader
-
- code - Variable in enum loci.formats.tiff.IFDType
-
Code for the IFD type in the actual TIFF file.
- code - Variable in enum loci.formats.tiff.PhotoInterp
-
Code for the IFD type in the actual TIFF file.
- code - Variable in enum loci.formats.tiff.TiffCompression
-
Code for the TIFF compression in the actual TIFF file.
- codeBlockSize - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Specifies the maximum code-block size to use for tile-component.
- codeBlockSize - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Specifies the maximum code-block size to use for tile-component.
- codeBlockSize - Variable in class loci.formats.codec.JPEG2000CodecOptions
-
- Codec - Interface in loci.formats.codec
-
This class is an interface for any kind of compression or decompression.
- codec - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- codec - Variable in class loci.formats.gui.DataConverter
-
- codec - Variable in class loci.formats.in.NativeND2Reader
-
Codec to use when decompressing pixel data.
- codec - Variable in class loci.formats.in.NativeQTReader
-
Video codec used by this movie.
- codec - Variable in class loci.formats.out.LegacyQTWriter
-
The codec to use.
- codec - Variable in class loci.formats.out.QTWriter
-
The codec to use.
- codec - Variable in enum loci.formats.tiff.TiffCompression
-
TIFF compression codec.
- CODEC_ANIMATION - Static variable in class loci.formats.out.QTWriter
-
Value indicating Animation codec.
- CODEC_CINEPAK - Static variable in class loci.formats.out.QTWriter
-
Value indicating Cinepak codec.
- CODEC_H_263 - Static variable in class loci.formats.out.QTWriter
-
Value indicating H.263 codec.
- CODEC_MOTION_JPEG_B - Static variable in class loci.formats.out.QTWriter
-
Value indicating Motion JPEG-B codec.
- CODEC_MPEG_4 - Static variable in class loci.formats.out.QTWriter
-
Value indicating MPEG-4 codec.
- CODEC_RAW - Static variable in class loci.formats.out.QTWriter
-
Value indicating Raw codec.
- CODEC_SORENSON - Static variable in class loci.formats.out.QTWriter
-
Value indicating Sorenson codec.
- CODEC_SORENSON_3 - Static variable in class loci.formats.out.QTWriter
-
Value indicating Sorenson 3 codec.
- codecName - Variable in enum loci.formats.tiff.TiffCompression
-
Name of the TIFF compression codec.
- CodecOptions - Class in loci.formats.codec
-
Options for compressing and decompressing data.
- CodecOptions() - Constructor for class loci.formats.codec.CodecOptions
-
Construct a new CodecOptions.
- CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.CodecOptions
-
Construct a new CodecOptions using the given CodecOptions.
- codecOptions - Variable in class loci.formats.tiff.TiffParser
-
Codec options to be used when decoding compressed pixel data.
- CodedCBlk - Class in jj2000.j2k.entropy
-
This is the generic class to store coded (compressed) code-block.
- CodedCBlk() - Constructor for class jj2000.j2k.entropy.CodedCBlk
-
Creates a new CodedCBlk object wit the default values and without
allocating any space for its members.
- CodedCBlk(int, int, int, byte[]) - Constructor for class jj2000.j2k.entropy.CodedCBlk
-
Creates a new CodedCBlk object with the specified values.
- CodedCBlkDataSrcDec - Interface in jj2000.j2k.entropy.decoder
-
This interface defines a source of entropy coded data and methods to
transfer it in a code-block by code-block basis.
- CodedCBlkDataSrcEnc - Interface in jj2000.j2k.entropy.encoder
-
This interface defines a source of entropy coded data and methods to
transfer it in a code-block by code-block basis.
- codeSegSymbol - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Inserts an error resilience segmentation symbol in the MQ codeword
at the end of each bit-plane (cleanup pass).
- codeSize_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor
-
base underlying code size of data being compressed 8 for TIFF, 1 to 8 for GIF
- codeStreamLength - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
The lengths of the codestreams in the fileformat
- CodestreamManipulator - Class in jj2000.j2k.util
-
This class takes a legal JPEG 2000 codestream and performs some
manipulation on it.
- CodestreamManipulator(File, int, int, boolean, boolean, boolean, boolean) - Constructor for class jj2000.j2k.util.CodestreamManipulator
-
Instantiates a codestream manipulator..
- codestreamOffset - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Offset to first contiguous codestream.
- codestreamPixelType - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Pixel type as specified in the JPEG 2000 codestream..
- codeStreamPos - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
The positions of the codestreams in the fileformat
- codestreamSizeC - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Number of channels the image as specified in the JPEG 2000 codestream.
- codestreamSizeX - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Width of the image as specified in the JPEG 2000 codestream.
- codestreamSizeY - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Height of the image as specified in the JPEG 2000 codestream.
- CodestreamWriter - Class in jj2000.j2k.codestream.writer
-
This is the abstract class for writing to a bit stream.
- CodestreamWriter(int) - Constructor for class jj2000.j2k.codestream.writer.CodestreamWriter
-
Allocates this object and initializes the maximum numner of
bytes.
- codeSymbol(int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
This function performs the arithmetic encoding of one symbol.
- codeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
This function performs the arithmetic encoding of several symbols
together.
- codingRangeCbCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- codingRangeY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- codingRangeY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- col - Variable in class loci.formats.in.CellVoyagerReader.WellInfo
-
- col - Variable in class loci.formats.in.ColumbusReader.Plane
-
- col - Variable in class loci.formats.in.OperettaReader.Plane
-
- col - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- colCount - Variable in class loci.formats.in.BaseZeissReader
-
- collection - Variable in class loci.formats.in.LeicaHandler
-
- collection - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- COLLECTION_VOLUME - Static variable in class loci.formats.in.CellSensReader
-
- colName - Variable in class loci.formats.in.InCellReader
-
- color - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- color - Variable in class loci.formats.in.LeicaHandler.ROI
-
- color - Variable in class loci.formats.in.LIFReader.ROI
-
- color - Variable in class loci.formats.in.OIRReader.Channel
-
- color - Variable in class loci.formats.in.ZeissCZIReader.Channel
-
- color16 - Variable in class loci.formats.in.IvisionReader
-
- COLOR_BAR - Static variable in class loci.formats.in.FV1000Reader
-
- COLOR_MAP - Static variable in class loci.formats.in.CanonRawReader
-
- COLOR_MAP - Static variable in class loci.formats.in.DNGReader
-
- COLOR_MAP - Static variable in class loci.formats.in.NikonReader
-
- COLOR_MAP - Static variable in class loci.formats.tiff.IFD
-
- COLOR_MAP_1 - Static variable in class loci.formats.in.MRWReader
-
- COLOR_MAP_2 - Static variable in class loci.formats.in.MRWReader
-
- COLOR_MODE - Static variable in class loci.formats.in.NikonReader
-
- COLOR_MODE_COLORIZED - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_MODE_COMPOSITE - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_MODE_CUSTOM - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_MODE_DEFAULT - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_MODE_GRAYSCALE - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_SPACE - Static variable in class loci.formats.in.CellSensReader
-
- COLOR_SPACE - Static variable in class loci.formats.tiff.IFD
-
- COLOR_SPACE_SRGB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ColorSpace" tag.
- COLOR_SPACE_UNCALIBRATED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ColorSpace" tag.
- colorConvert - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
A TIFFColorConverter
object describing the color space of
the encoded pixel data, or null
.
- colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
- colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
- colorConverter - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- colorCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- ColorDialog - Class in loci.plugins.in
-
Bio-Formats Importer custom color chooser dialog box.
- ColorDialog(ImportProcess) - Constructor for class loci.plugins.in.ColorDialog
-
- colorize - Variable in class loci.plugins.util.BFVirtualStack
-
- Colorizer - Class in loci.plugins.in
-
Logic for colorizing images.
- Colorizer(ImportProcess) - Constructor for class loci.plugins.in.Colorizer
-
- ColorMap() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ColorMap
-
- colorMap - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The value of the ColorMap
tag.
- colorMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- colorMap - Variable in class loci.formats.in.TargaReader
-
- colorModeChoice - Variable in class loci.plugins.in.MainDialog
-
- colorModel - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
The image's ColorModel.
- colorModel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- colorModel - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- colorModel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- colorModel - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Create a IndexColorModel from the palette box if there is one
- colorModel - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
The color model of the image to be compressed.
- colorModel - Variable in class loci.formats.codec.CodecOptions
-
Color model to use when constructing an image (WRITE).
- ColorNode() - Constructor for class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- colorPlanes - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- colorPlanes - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- colorResolution - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- COLORS - Variable in class loci.formats.in.CellH5Reader
-
- colors - Variable in class loci.formats.in.ImarisHDFReader
-
- colors - Variable in class loci.formats.in.IMODReader
-
- colors - Variable in class loci.formats.in.NativeND2Reader
-
- colors - Variable in class loci.formats.in.ND2Handler
-
- colorsImportant - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- ColorSpace() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ColorSpace
-
- colorSpace - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- COLORSPACE - Static variable in class loci.formats.in.CellSensReader
-
- colorSpaceNames - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- colorSpaceType - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Color specification
- ColorSpecificationBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a Color Specification Box of JPEG JP2
file format.
- ColorSpecificationBox(byte, byte, byte, int, ICC_Profile) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Creates a ColorSpecificationBox
from the provided data
elements.
- ColorSpecificationBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Creates a ColorSpecificationBox
from the provided byte
array.
- ColorSpecificationBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Constructs a ColorSpecificationBox
based on the provided
org.w3c.dom.Node
.
- colorsUsed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- colorTables - Variable in class loci.formats.in.GIFReader
-
- colorTableSizes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- COLOUR_SPECIFICATION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- cols - Variable in class loci.formats.in.CellSensReader
-
- colT - Variable in class loci.formats.in.SDTInfo
-
- ColumbusReader - Class in loci.formats.in
-
ColumbusReader is the file format reader for screens exported from PerkinElmer Columbus.
- ColumbusReader() - Constructor for class loci.formats.in.ColumbusReader
-
Constructs a new Columbus reader.
- ColumbusReader.MeasurementHandler - Class in loci.formats.in
-
- ColumbusReader.Plane - Class in loci.formats.in
-
- column - Variable in class loci.formats.in.FlexReader.FlexFile
-
- column - Variable in class loci.formats.in.OMEXMLReader.BinData
-
- column - Variable in class loci.formats.tools.AmiraParameters
-
- COLUMNS - Static variable in class loci.formats.gui.DataConverter
-
- COLUMNS - Static variable in class loci.formats.in.DicomReader
-
- com - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the COM marker segments found in main and tile-part
headers.
- COM() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COM
-
- COM - Static variable in interface jj2000.j2k.codestream.Markers
-
Comment (COM): 0xFF64
- COM - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- com.sun.media.imageio.plugins.bmp - package com.sun.media.imageio.plugins.bmp
-
Package containing the public classes used by the Sun BMP plug-in for
the Image I/O Framework.
- com.sun.media.imageio.plugins.jpeg2000 - package com.sun.media.imageio.plugins.jpeg2000
-
Package containing the public classes used by the Sun JPEG 2000 plug-in for
the Image I/O Framework.
- com.sun.media.imageio.plugins.pnm - package com.sun.media.imageio.plugins.pnm
-
Package containing the public classes used by the Sun PNM plug-in for
the Image I/O Framework.
- com.sun.media.imageio.plugins.tiff - package com.sun.media.imageio.plugins.tiff
-
Package containing the public classes used by the TIFF plug-in for
the Image I/O Framework.
- com.sun.media.imageio.stream - package com.sun.media.imageio.stream
-
Provides ImageInputStream
and ImageOutputStream
classes for use with the Java Image I/O Framework.
- com.sun.media.imageioimpl.common - package com.sun.media.imageioimpl.common
-
- com.sun.media.imageioimpl.plugins.bmp - package com.sun.media.imageioimpl.plugins.bmp
-
- com.sun.media.imageioimpl.plugins.clib - package com.sun.media.imageioimpl.plugins.clib
-
- com.sun.media.imageioimpl.plugins.gif - package com.sun.media.imageioimpl.plugins.gif
-
- com.sun.media.imageioimpl.plugins.jpeg - package com.sun.media.imageioimpl.plugins.jpeg
-
- com.sun.media.imageioimpl.plugins.jpeg2000 - package com.sun.media.imageioimpl.plugins.jpeg2000
-
- com.sun.media.imageioimpl.plugins.pcx - package com.sun.media.imageioimpl.plugins.pcx
-
- com.sun.media.imageioimpl.plugins.png - package com.sun.media.imageioimpl.plugins.png
-
- com.sun.media.imageioimpl.plugins.pnm - package com.sun.media.imageioimpl.plugins.pnm
-
- com.sun.media.imageioimpl.plugins.raw - package com.sun.media.imageioimpl.plugins.raw
-
- com.sun.media.imageioimpl.plugins.tiff - package com.sun.media.imageioimpl.plugins.tiff
-
- com.sun.media.imageioimpl.plugins.wbmp - package com.sun.media.imageioimpl.plugins.wbmp
-
- com.sun.media.imageioimpl.stream - package com.sun.media.imageioimpl.stream
-
- com.sun.media.jai.imageioimpl - package com.sun.media.jai.imageioimpl
-
- com.sun.media.jai.operator - package com.sun.media.jai.operator
-
Provides JAI operations which read and write images using the Java Image
I/O Framework.
- COM_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for COM marker segment found
- ComboFileFilter - Class in loci.formats.gui
-
A file filter that recognizes files from a union of other filters.
- ComboFileFilter(FileFilter[], String) - Constructor for class loci.formats.gui.ComboFileFilter
-
Constructs a new filter from a list of other filters.
- COMMENT - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- comment - Variable in class loci.formats.in.FluoviewReader
-
- comment - Variable in class loci.formats.in.MicromanagerReader.Position
-
- comment - Variable in class loci.formats.in.QuesantReader
-
- COMMENT_STYLE_END - Static variable in class loci.formats.gui.XMLCellRenderer
-
- COMMENT_STYLE_START - Static variable in class loci.formats.gui.XMLCellRenderer
-
- comments - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- comments - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- comments - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
The comments.
- comments - Variable in class loci.formats.in.JPEG2000MetadataParser
-
List of comments stored in the file.
- comments - Variable in class loci.formats.in.SVSReader
-
- commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Writes the header data to the bit stream, if it has not been already
done.
- commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Writes the header data in the codestream and actualize ndata with the
header length.
- comp - Variable in class jj2000.j2k.roi.encoder.ROI
-
The components for which the ROI is relevant
- comp - Variable in class loci.formats.gui.CacheIndicator
-
- COMP_POS_RES_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType
-
The bit stream is Component/Position/Resolution/Layer progressive : 4
- COMPANION_KEY - Static variable in class loci.formats.out.OMETiffWriter
-
- COMPANION_SUFFIXES - Static variable in class loci.formats.in.TiffReader
-
- companionFile - Variable in class loci.formats.in.TiffReader
-
- companionFiles - Variable in class loci.formats.in.DicomReader
-
- compare(Object, Object) - Method in class loci.formats.cache.CacheStrategy
-
Default comparator orders dimensional positions based on distance from the
current position, taking into account axis priorities and planar ordering.
- compare(String, String) - Method in class loci.formats.in.MetamorphTiffReader.NumericComparator
-
- compareTo(Object) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Compares this TIFFField
with another
TIFFField
by comparing the tags.
- compareTo(Object) - Method in class loci.formats.gui.ComboFileFilter
-
Compares two FileFilter objects alphanumerically.
- compareTo(Object) - Method in class loci.formats.gui.ExtensionFileFilter
-
Compares two FileFilter objects alphanumerically.
- compareTo(Object) - Method in class loci.formats.gui.FormatFileFilter
-
Compares two FileFilter objects alphanumerically.
- compareTo(Object) - Method in class loci.formats.gui.NoExtensionFileFilter
-
Compares two FileFilter objects alphanumerically.
- compareTo(Object) - Method in class loci.formats.tiff.TiffIFDEntry
-
- compareTo(TiffRational) - Method in class loci.formats.tiff.TiffRational
-
Compares this object with the specified object for order.
- compareTo(Object) - Method in class loci.plugins.config.FormatEntry
-
- compareTo(Object) - Method in class loci.plugins.config.LibraryEntry
-
- compareTo(ThumbLoader.SeriesInfo) - Method in class loci.plugins.in.ThumbLoader.SeriesInfo
-
- compareTokens(String[], int, String[], int) - Method in class loci.formats.in.ICSReader
-
- compatibility - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
- compDef - Variable in class jj2000.j2k.ModuleSpec
-
The default value for each component.
- compH - Variable in class jj2000.j2k.image.Tiler
-
The component height in the current active tile, for each component
- compHeight - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
Component heights
- compIdx - Variable in class jj2000.j2k.image.ImgDataJoiner
-
The component index associated with each ImgData
- compImageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- complete - Variable in class jj2000.j2k.util.ISRandomAccessIO
-
- completedComps - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The queue of completed compressors, for each component.
- COMPLEX - Static variable in class loci.formats.in.CellSensReader
-
- COMPLEX - Static variable in class loci.formats.in.ZeissCZIReader
-
- COMPLEX_FLOAT - Static variable in class loci.formats.in.ZeissCZIReader
-
- compMainDefDecompType - Variable in class jj2000.j2k.wavelet.WTDecompSpec
-
The component main default decomposition, for each component.
- compMainDefLevels - Variable in class jj2000.j2k.wavelet.WTDecompSpec
-
The component main default decomposition levels, for each component
- COMPONENT_HEIGHT - Static variable in class loci.formats.gui.CacheIndicator
-
- COMPONENT_MAPPING_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- COMPONENT_WIDTH - Static variable in class loci.formats.gui.CacheIndicator
-
- ComponentMappingBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a Color Specification Box of JPEG JP2
file format.
- ComponentMappingBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
Constructs a ComponentMappingBox
from the provided
content byte array.
- ComponentMappingBox(short[], byte[], byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
Constructs a ComponentMappingBox
from the provided
component mapping.
- ComponentMappingBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
Constructs a ComponentMappingBox
based on the provided
org.w3c.dom.Node
.
- components - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
The data elements.
- COMPONENTS_CONFIGURATION - Static variable in class loci.formats.tiff.IFD
-
- COMPONENTS_CONFIGURATION_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_CB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_CR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_DOES_NOT_EXIST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_G - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_R - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_Y - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- ComponentsConfiguration() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ComponentsConfiguration
-
- componentTransformation - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Specifies to utilize the component transformation with some tiles.
- componentTransformation - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Specifies to utilize the component transformation with some tiles.
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Composes the content byte array from the data elements.
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
-
- composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
Append newString
to the end of oldString
.
- composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
Append newString
to the end of oldString
.
- COMPR_MASKS - Static variable in class loci.formats.codec.LZWCodec
-
Masks for writing bits in compressor.
- compress(byte[], int, int) - Method in class com.sun.media.imageioimpl.common.LZWCompressor
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.Base64Codec
-
- compress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec
-
2D data block encoding default implementation.
- compress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec
-
Compresses a block of data.
- compress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec
-
Compresses a block of data.
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEGCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEGXRCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZOCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZWCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.MJPBCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSRLECodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSVideoCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.NikonCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.PackbitsCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.RPZACodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.TargaRLECodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.ZlibCodec
-
- compress(byte[]) - Method in class loci.formats.out.OMEXMLWriter
-
Compress the given byte array using the current codec.
- compress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression
-
Encodes a strip of data.
- compress(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Compress the uncompressed source image associated with this compressor
instance and output a JPEG image to the given destination buffer.
- compress(int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Compress the uncompressed source image associated with this compressor
instance and return a buffer containing a JPEG image.
- compress(BufferedImage, byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Compress the uncompressed source image stored in srcImage
and output a JPEG image to the given destination buffer.
- compress(BufferedImage, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Compress the uncompressed source image stored in srcImage
and return a buffer containing a JPEG image.
- compress(byte[], int, int, int, int, byte[], int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
- compress(int[], int, int, int, int, byte[], int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
- compressBuffer(int, byte[], int, int, int, int) - Method in class loci.formats.out.JPEG2000Writer
-
Compresses the buffer.
- compressCodeBlock(int, CBlkRateDistStats, CBlkWTData, MQCoder, BitToByteOutput, ByteOutputBuffer, int[], double[], int[], boolean[], int[], int[], int, boolean, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Compresses the code-block in 'srcblk' and puts the results in 'ccb',
using the specified options and temporary storage.
- compressed - Variable in class loci.formats.in.NAFReader
-
- compressed - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- compressed - Variable in class loci.formats.in.PSDReader
-
- compressed - Variable in class loci.formats.in.SBIGReader
-
- compressed - Variable in class loci.formats.in.TargaReader
-
- COMPRESSED_BITS_PER_PIXEL - Static variable in class loci.formats.tiff.IFD
-
- CompressedBitsPerPixel() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.CompressedBitsPerPixel
-
- compressedSize - Variable in class loci.formats.in.AmiraReader.HxRLE
-
- compressedSize - Variable in class loci.formats.in.AmiraReader.HxZip
-
- compressedSize - Variable in class org.libjpegturbo.turbojpeg.TJCompressor
-
- compressedTiles - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- Compression() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Compression
-
- compression - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The value of the Compression
tag.
- compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- compression - Variable in enum loci.formats.codec.CompressionType
-
The compression used.
- compression - Variable in class loci.formats.FormatWriter
-
Current compression type.
- compression - Variable in class loci.formats.in.AmiraReader
-
- compression - Variable in class loci.formats.in.APNGReader
-
- compression - Variable in class loci.formats.in.BMPReader
-
Compression type
- compression - Variable in class loci.formats.in.LiFlimReader
-
- compression - Variable in class loci.formats.in.OBFReader.Stack
-
- compression - Variable in class loci.formats.in.OMEXMLReader
-
- compression - Variable in class loci.formats.in.PhotoshopTiffReader
-
- compression - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry
-
- COMPRESSION - Static variable in class loci.formats.tiff.IFD
-
- COMPRESSION_CCITT_RLE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_CCITT_T_4 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_CCITT_T_6 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_DEFLATE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_GZIP - Static variable in class loci.formats.in.LiFlimReader
-
- COMPRESSION_J2K - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_J2K_LOSSY - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_JPEG - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- COMPRESSION_LZW - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_LZW - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_NONE - Static variable in class loci.formats.in.LiFlimReader
-
- COMPRESSION_OLD_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_PACKBITS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_SUFFIXES - Static variable in class loci.formats.FormatHandler
-
Suffixes for supported compression types.
- COMPRESSION_UNCOMPRESSED - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_ZLIB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- compressionNumbers - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Compression tag values for known compression types.
- compressionTagValue - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
The value to be assigned to the TIFF Compression tag in the
TIFF image metadata.
- compressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
The name of the compression type supported by this compressor.
- compressionType - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- compressionType - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
- compressionType - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
- CompressionType - Enum in loci.formats.codec
-
An enumeration of compression types.
- CompressionType(int, String) - Constructor for enum loci.formats.codec.CompressionType
-
Default constructor.
- compressionType - Variable in class loci.formats.in.CellSensReader
-
- compressionTypeNames - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- compressionTypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Known TIFF compression types.
- compressionTypes - Variable in class loci.formats.FormatWriter
-
Available compression types.
- compressionTypes - Variable in class loci.formats.ImageWriter
-
Compression types for all file format writers.
- compressor - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
- compressor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- Compressor(int) - Constructor for class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
Creates a new compressor object with the given index.
- comps - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Component mapping
- compSize - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
- CompTransfSpec - Class in jj2000.j2k.image
-
This class extends ModuleSpec class in order to hold tile
specifications for component transformation
- CompTransfSpec(int, int, byte) - Constructor for class jj2000.j2k.image.CompTransfSpec
-
Constructs an empty 'CompTransfSpec' with specified number of
tile and components.
- computeAxisLengths() - Method in class loci.formats.FileStitcher
-
Computes axis length arrays, and total axis lengths.
- computeIndices(int) - Method in class loci.formats.FileStitcher
-
Gets the file index, and image index into that file,
corresponding to the given global image index.
- computeLength(ColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Computes the length of this box from the provided
ColorModel
.
- computeLength(byte, ICC_Profile) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Computes the length of this box when profile is present.
- computeLength(IndexColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Compute the length of this box.
- computeLength(IIOMetadataNode) - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
- computeNameAndLocation() - Method in class loci.plugins.in.ImportProcess
-
Initializes the idName and idLoc derived values.
- computePhysicalSize(int, String, String) - Method in class loci.formats.in.VarianFDFReader
-
Return the physical size of a pixel, in microns, along an arbitrary axis
based on the supplied physical and pixel lengths of the axis.
- computeRegions(Rectangle, Dimension, ImageWriteParam) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Compute the source region and destination dimensions taking any
parameter settings into account.
- computeRegionsWrapper(ImageReadParam, boolean, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Wrapper for the protected method computeRegions
.
- computeRegionsWrapper(ImageReadParam, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
Wrapper for the protected method computeRegions
.
- computeSeriesLabels(IFormatReader) - Method in class loci.plugins.in.ImportProcess
-
- computeSizeT(int) - Method in class loci.formats.in.PrairieReader
-
Scans the parsed metadata to determine the number of actual time points
versus the number of actual stage positions.
- computeVariableTimeInterval(IMetadata, int) - Method in class loci.plugins.in.Calibrator
-
- compW - Variable in class jj2000.j2k.image.Tiler
-
The component width in the current active tile, for each component
- compWidth - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
Component widths
- concatenate(List<ImagePlus>) - Method in class loci.plugins.in.Concatenator
-
Concatenates the list of images as appropriate.
- concatenate(List<ImagePlus>) - Method in class loci.plugins.in.ImagePlusReader
-
- concatenateBox - Variable in class loci.plugins.in.MainDialog
-
- concatenateTokens(String[], int, int) - Method in class loci.formats.in.ICSReader
-
- Concatenator - Class in loci.plugins.in
-
Logic for concatenating multiple images together.
- Concatenator() - Constructor for class loci.plugins.in.Concatenator
-
- conceal(DataBlk, int) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Conceals decoding errors detected in the last bit-plane.
- CONCURRENCY_PROP_NAME - Static variable in class jj2000.j2k.util.ThreadPool
-
The name of the property that sets the concurrency level:
jj2000.j2k.util.ThreadPool.concurrency
- config - Variable in class loci.formats.in.PrairieMetadata
-
Key/value pairs from CFG and/or ENV files.
- ConfigWindow - Class in loci.plugins.config
-
A window for managing configuration of the Bio-Formats plugins.
- ConfigWindow() - Constructor for class loci.plugins.config.ConfigWindow
-
- confirmFileType() - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Checks that the RandomAccessIO begins with 'P5'
- ConsecutiveBadFaxLines() - Constructor for class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet.ConsecutiveBadFaxLines
-
- constructDialog() - Method in class loci.plugins.in.ColorDialog
-
- constructDialog() - Method in class loci.plugins.in.CropDialog
-
- constructDialog() - Method in class loci.plugins.in.FilePatternDialog
-
- constructDialog() - Method in class loci.plugins.in.IdDialog
-
- constructDialog() - Method in class loci.plugins.in.ImporterDialog
-
- constructDialog() - Method in class loci.plugins.in.LocationDialog
-
- constructDialog() - Method in class loci.plugins.in.MainDialog
-
- constructDialog() - Method in class loci.plugins.in.MemoryDialog
-
- constructDialog() - Method in class loci.plugins.in.RangeDialog
-
- constructDialog() - Method in class loci.plugins.in.SeriesDialog
-
- constructDialog() - Method in class loci.plugins.in.SwapDialog
-
- constructDialog() - Method in class loci.plugins.in.UpgradeDialog
-
- constructImage(int, int, int, int, boolean, boolean, DataBuffer) - Static method in class loci.formats.gui.AWTImageTools
-
Creates an image with the given DataBuffer.
- constructImage(int, int, int, int, boolean, boolean, DataBuffer, ColorModel) - Static method in class loci.formats.gui.AWTImageTools
-
Creates an image with the given DataBuffer.
- constructImageTitle(IFormatReader, String, String, boolean) - Method in class loci.plugins.in.ImagePlusReader
-
- constructLoader() - Static method in class loci.formats.gui.LegacyQTTools
-
- constructSliceLabel(int, IFormatReader, IMetadata, int, int, int, int) - Method in class loci.plugins.in.ImagePlusReader
-
- consumer - Variable in class loci.formats.codec.JPEGTileDecoder
-
- CONTAINER_TYPES - Static variable in class loci.formats.in.NativeQTReader
-
List of identifiers for each container atom.
- ContainerRecord(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.ContainerRecord
-
- containsTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Determines whether a TIFF field with the given tag number is
contained in this directory.
- contentFileType - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry
-
- contentGUID - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry
-
- contents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources
-
- contents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources
-
- contents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources
-
- contents - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources
-
- contents - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources
-
- contents - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources
-
- Context() - Constructor for enum loci.formats.in.BaseZeissReader.Context
-
- context - Variable in class loci.formats.in.BaseZeissReader.Tag
-
- CONTIGUOUS_CODESTREAM_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- Contrast() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Contrast
-
- CONTRAST - Static variable in class loci.formats.in.CellSensReader
-
- CONTRAST - Static variable in class loci.formats.tiff.IFD
-
- CONTRAST_BRIGHTNESS - Static variable in class loci.formats.in.CellSensReader
-
- CONTRAST_HARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Contrast" tag.
- CONTRAST_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Contrast" tag.
- CONTRAST_SOFT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Contrast" tag.
- CONTRAST_TARGET - Static variable in class loci.formats.in.CellSensReader
-
- convert(String, String) - Static method in class loci.formats.FormatTools
-
Convenience method for converting the specified input file to the
specified output file.
- convert(IFormatReader, IFormatWriter, String) - Static method in class loci.formats.FormatTools
-
Convenience method for writing all of the images and metadata obtained
from the specified IFormatReader into the specified IFormatWriter.
- convert - Variable in class loci.formats.gui.DataConverter
-
- converter - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- converter2 - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- convertFactor - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
The value by which the absolute value of the data has to be divided in
order to get the real absolute value.
- convertFromExpMantissa(int) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Converts the exponent-mantissa representation to its floating-point
value.
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Creates a default image metadata object and merges in the
supplied metadata.
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- convertMetadata(String, IIOMetadata, IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Merges inData
into outData
.
- convertMetadata(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter
-
Deprecated.
Copies information from a metadata retrieval object
(source) into a metadata store (destination).
- convertMetadata(String, MetadataStore) - Method in interface loci.formats.services.OMEXMLService
-
Converts information from an OME-XML string (source)
into a metadata store (destination).
- convertMetadata(MetadataRetrieve, MetadataStore) - Method in interface loci.formats.services.OMEXMLService
-
Copies information from a metadata retrieval object
(source) into a metadata store (destination).
- convertMetadata(String, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- convertMetadata(MetadataRetrieve, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- convertNativeImageMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Converts a native
com_sun_media_imageio_plugins_tiff_image_1.0
tree to a
TIFFImageMetadata
object.
- convertObjectToString(Object) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Converts the provided object to String
- convertPixelType(int) - Method in class loci.formats.in.CellSensReader
-
- convertPixelType(int) - Method in class loci.formats.in.JPEG2000MetadataParser
-
- convertPixelType(int) - Method in class loci.formats.in.TillVisionReader
-
- convertPixelType(int) - Method in class loci.formats.in.ZeissCZIReader
-
- convertPixelType(CoreMetadata, int) - Method in class loci.formats.in.ZeissCZIReader
-
- convertRenderedImage(RenderedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Converts a java.awt.image.RenderedImage into a
java.awt.image.BufferedImage.
- convertStandardImageMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Converts a standard javax_imageio_1.0
tree to a
TIFFImageMetadata
object.
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Creates a default stream metadata object and merges in the
supplied metadata.
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- convertTo8Bit(short[][]) - Method in class loci.plugins.util.ImageProcessorReader
-
- convertToByte(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
-
- convertToExpMantissa(float) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Converts the floating point value to its exponent-mantissa
representation.
- convertToFloat() - Method in class loci.plugins.util.RecordedImageProcessor
-
- convertToRGB() - Method in class loci.plugins.util.RecordedImageProcessor
-
- convertToShort(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
-
- convertUnits(String) - Method in class loci.formats.in.GatanReader
-
- convertUnits(int) - Method in class loci.formats.in.IMODReader
-
- convolve(float[], int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- convolve3x3(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- COOKIE - Static variable in class loci.formats.in.IM3Reader
-
First 4 bytes of file is "1985"
- COOLING_ON - Static variable in class loci.formats.in.CellSensReader
-
- coordinate - Variable in class loci.formats.in.CellSensReader.TileCoordinate
-
- Coordinate(int, int, int) - Constructor for class loci.formats.in.ZeissCZIReader.Coordinate
-
- coordinates - Variable in class loci.formats.in.BaseZeissReader
-
- CoordInfo - Class in jj2000.j2k.codestream
-
This class is used to store the coordinates of objects such as code-blocks
or precincts.
- CoordInfo(int, int, int, int) - Constructor for class jj2000.j2k.codestream.CoordInfo
-
Constructor.
- CoordInfo() - Constructor for class jj2000.j2k.codestream.CoordInfo
-
Empty contructor
- copyBits(ImageProcessor, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Copies an arbitrary rectangular region of the RenderedImage
into a caller-supplied WritableRaster.
- copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- copyInt(byte[], int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Copies that four bytes of an integer into the byte array.
- copyPixels(int, int, int, int, int, int, byte[], byte[], boolean) - Method in class loci.formats.in.NativeND2Reader
-
- Copyright() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Copyright
-
- copyright - Static variable in class jj2000.j2k.JJ2KInfo
-
The copyright message string.
- COPYRIGHT - Static variable in class loci.formats.tiff.IFD
-
- copyScaled(BufferedImage, BufferedImage, Object) - Static method in class loci.formats.gui.AWTImageTools
-
Copies the source image into the target, applying scaling.
- core - Variable in class loci.formats.DimensionSwapper
-
Core metadata associated with this dimension swapper.
- core - Variable in class loci.formats.FileStitcher
-
Core metadata.
- core - Variable in class loci.formats.FormatReader
-
Core metadata values.
- core - Variable in class loci.formats.in.LeicaHandler
-
- core - Variable in class loci.formats.in.ND2Handler
-
- core - Variable in class loci.formats.in.VolocityReader.Stack
-
- coreIndex - Variable in class loci.formats.FileStitcher
-
The number of the current series.
- coreIndex - Variable in class loci.formats.FormatReader
-
The number of the current series.
- coreIndex - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- coreIndexToSeries(int) - Method in class loci.formats.FileStitcher
-
- coreIndexToSeries(int) - Method in class loci.formats.FormatReader
-
- coreIndexToSeries(int) - Method in interface loci.formats.IFormatReader
-
Returns the series corresponding to the specified core index.
- coreIndexToSeries(int) - Method in class loci.formats.ImageReader
-
- coreIndexToSeries(int) - Method in class loci.formats.in.FilePatternReader
-
- coreIndexToSeries(int) - Method in class loci.formats.ReaderWrapper
-
- CoreMetadata - Class in loci.formats
-
Encompasses core metadata values.
- CoreMetadata() - Constructor for class loci.formats.CoreMetadata
-
- CoreMetadata(IFormatReader, int) - Constructor for class loci.formats.CoreMetadata
-
- CoreMetadata(CoreMetadata) - Constructor for class loci.formats.CoreMetadata
-
- coreMetaData - Static variable in class loci.formats.in.SPEReader
-
- correction - Variable in class loci.formats.in.ND2Handler
-
- correction - Variable in class loci.formats.in.NikonTiffReader
-
- correction - Variable in class loci.formats.in.ZeissLSMReader.Recording
-
- correctionCollar - Variable in class loci.formats.in.ZeissCZIReader
-
- corrections - Variable in class loci.formats.in.LIFReader
-
- correctUnits(Double, String) - Method in class loci.formats.in.ColumbusReader
-
- CorruptedCodestreamException - Exception in jj2000.j2k.codestream
-
Thsi exception is thrown whenever an illegal value is read from a
bit stream.
- CorruptedCodestreamException() - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException
-
Constructs a new CorruptedCodestreamException exception
with no detail message.
- CorruptedCodestreamException(String) - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException
-
Constructs a new CorruptedCodestreamException exception
with the specified detail message.
- cortime - Variable in class loci.formats.in.SDTInfo
-
Correlation time [ms].
- count - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField
-
The number of data items present in the field.
- count - Variable in class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
The index one greater than the last valid character in the input
stream buffer
- count - Variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
The number of valid bytes in the buffer
- count - Variable in class loci.formats.in.LeicaHandler
-
- count() - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- count - Variable in class loci.formats.in.ZeissTIFFHandler.TagSet
-
- countBits(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- countedByteRead() - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Returns a byte read from the RandomAccessIO.
- COUNTER_CLOCKWISE - Static variable in class loci.formats.in.FluoviewReader
-
- countImages() - Method in class loci.formats.in.BaseZeissReader
-
- countImages() - Method in class loci.formats.in.ZeissTIFFReader
-
- countImages() - Method in class loci.formats.in.ZeissZVIReader
-
- cqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC
-
- cQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
The component in which the ncb quit condition was reached
- crc(byte[]) - Method in class loci.formats.out.APNGWriter
-
- crc(byte[], int, int) - Method in class loci.formats.out.APNGWriter
-
- createAngle(Double, Unit<Angle>) - Static method in class loci.formats.FormatTools
-
- createAngle(Integer, Unit<Angle>) - Static method in class loci.formats.FormatTools
-
- createAngle(T, Unit<Angle>) - Static method in class loci.formats.FormatTools
-
- createArrayForType(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Creates an array appropriate for the indicated data type.
- createBaseReader() - Method in class loci.plugins.in.ImportProcess
-
Initializes an
IFormatReader
according to the current configuration.
- createBitsPerComponentBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- createBox(int, Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Creates a Box
object with the provided type
based on the provided Node object based on reflection.
- createChannelDefinitionFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- createChannelPriorities() - Static method in class loci.formats.in.LIFReader
-
- createCodec(boolean) - Method in class loci.formats.in.NativeND2Reader
-
- createColorModel(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Creates a ColorModel
that may be used with the
specified SampleModel
.
- createColorModel(ColorSpace, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
- createColorModel() - Method in class loci.plugins.util.ImageProcessorReader
-
- createColorSpecificationBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- createColorTable(ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Create a color table from the image ColorModel and SampleModel.
- createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.Index16ColorModel
-
- createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.SignedColorModel
-
- createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- createComponentCM(ColorSpace, int, int, boolean, boolean) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Create a ComponentColorModel
for use in creating
an ImageTypeSpecifier
.
- created - Variable in class loci.formats.out.QTWriter
-
Time the file was created.
- createDecoder(short[], int, int) - Method in class loci.formats.codec.HuffmanCodec.Decoder
-
- createDecoder(HuffmanCodec.Decoder, short[], int, int) - Method in class loci.formats.codec.HuffmanCodec.Decoder
-
- createDequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the dequantizer parameters.
- createElectricPotential(Double, Unit<ElectricPotential>) - Static method in class loci.formats.FormatTools
-
- createElectricPotential(Integer, Unit<ElectricPotential>) - Static method in class loci.formats.FormatTools
-
- createElectricPotential(T, Unit<ElectricPotential>) - Static method in class loci.formats.FormatTools
-
- createEntropyDecoder(CodedCBlkDataSrcDec, J2KImageReadParamJava) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Creates and returns the entropy decoder corresponding to the
information read from the codestream header and with the special
additional parameters from the parameter list.
- createFileInfo() - Method in class loci.plugins.in.ImagePlusReader
-
- createFrequency(Double, Unit<Frequency>) - Static method in class loci.formats.FormatTools
-
- createFrequency(Integer, Unit<Frequency>) - Static method in class loci.formats.FormatTools
-
- createFrequency(T, Unit<Frequency>) - Static method in class loci.formats.FormatTools
-
- createFromMetadata(IIOMetadata) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Creates a TIFFDirectory
instance from the contents of
an image metadata object.
- createFromMetadataNode(TIFFTagSet, Node) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Creates a TIFFField
from a TIFF native image
metadata node.
- createGroup(String) - Method in interface loci.formats.services.JHDFService
-
Writes an array as sub-slice into an existing HDF5 dataset
- createGroup(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- createHeaderBoxFromStandardNode(Node, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- createImage(String, List<ImageProcessor>) - Static method in class loci.plugins.in.ImagePlusReader
-
Creates an ImagePlus
from the given image processors.
- createImage(String, ImageStack, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader
-
Creates an ImagePlus
from the given image stack.
- createImage() - Method in class loci.plugins.util.RecordedImageProcessor
-
- createIndexColorModel(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Creates an palette representing colors from given image
img
.
- createIndexedImage(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Creates an image representing given image
src
using IndexColorModel.
- createIndexMap(int) - Method in class loci.formats.in.FakeReader
-
Creates a mapping between indices and color values.
- createInputStream() - Method in class loci.formats.out.TiffWriter
-
- createInputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
-
- createInstance(RandomAccessIO, HeaderDecoder, J2KImageReadParamJava, DecoderSpecs, boolean, HeaderInfo) - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Creates a bit stream reader of the correct type that works on the
provided RandomAccessIO, with the special parameters from the parameter
list.
- createInstance(CBlkQuantDataSrcEnc, J2KImageWriteParamJava, CBlkSizeSpec, PrecinctSizeSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec) - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder
-
Creates a EntropyCoder object for the appropriate entropy coding
parameters in the parameter list 'pl', and having 'src' as the source
of quantized data.
- createInstance(CodedCBlkDataSrcEnc, float, CodestreamWriter, J2KImageWriteParamJava) - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
Creates a PostCompRateAllocator object for the appropriate rate
allocation parameters in the parameter list 'pl', having 'src' as the
source of entropy coded data, 'rate' as the target bitrate and 'bw' as
the bit stream writer object.
- createInstance(CBlkWTDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Creates a Quantizer object for the appropriate type of quantization
specified in the options in the parameter list 'pl', and having 'src'
as the source of data to be quantized.
- createInstance(Quantizer, J2KImageWriteParamJava) - Static method in class jj2000.j2k.roi.encoder.ROIScaler
-
Creates a ROIScaler object.
- createInstance(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Static method in class jj2000.j2k.roi.ROIDeScaler
-
Creates a ROIDeScaler object.
- createInstance(BlkImgDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT
-
Creates a ForwardWT object with the specified filters, and with other
options specified in the parameter list 'pl'.
- createInstance(CBlkWTDataSrcDec, DecoderSpecs) - Static method in class jj2000.j2k.wavelet.synthesis.InverseWT
-
Creates an InverseWT object that works on the data type of the source,
with the special additional parameters from the parameter
list.
- createInterleavedSM(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Create a PixelInterleavedSampleModel
for use in creating
an ImageTypeSpecifier
.
- createKeys() - Static method in class loci.formats.in.ZeissLSMReader
-
- createLargePalette(ColorModel) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- createLength(Double, Unit<Length>) - Static method in class loci.formats.FormatTools
-
- createLength(Integer, Unit<Length>) - Static method in class loci.formats.FormatTools
-
- createLength(T, Unit<Length>) - Static method in class loci.formats.FormatTools
-
- createLSID(String, int...) - Static method in class loci.formats.MetadataTools
-
Constructs an LSID, given the object type and indices.
- createMask(int[], int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- createMetadata(String, CoreMetadata) - Method in class loci.formats.tools.MakeTestOmeTiff
-
- createModulo(OMEXMLMetadata, Modulo, StructuredAnnotations, Image, int, int, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
Create a ModuloAlong* annotation corresponding to the given
Modulo
.
- createNodeIntoTree(IIOMetadataNode, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- createOMEXMLMetadata() - Static method in class loci.formats.MetadataTools
-
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome
package.
- createOMEXMLMetadata() - Method in interface loci.formats.services.OMEXMLService
-
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome
package.
- createOMEXMLMetadata(String) - Method in interface loci.formats.services.OMEXMLService
-
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome
package,
wrapping a DOM representation of the given OME-XML string.
- createOMEXMLMetadata(String, String) - Method in interface loci.formats.services.OMEXMLService
-
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome
package,
wrapping a DOM representation of the given OME-XML string.
- createOMEXMLMetadata() - Method in class loci.formats.services.OMEXMLServiceImpl
-
- createOMEXMLMetadata(String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- createOMEXMLMetadata(String, String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- createOMEXMLRoot(String) - Method in interface loci.formats.services.OMEXMLService
-
Constructs an OME root node.
- createOMEXMLRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- createOutputStream() - Method in class loci.formats.FormatWriter
-
- createOutputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
-
- createPaletteBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- createPlane(String, CoreMetadata, int) - Method in class loci.formats.tools.MakeTestOmeTiff
-
- createPower(Double, Unit<Power>) - Static method in class loci.formats.FormatTools
-
- createPower(Integer, Unit<Power>) - Static method in class loci.formats.FormatTools
-
- createPower(T, Unit<Power>) - Static method in class loci.formats.FormatTools
-
- createPressure(Double, Unit<Pressure>) - Static method in class loci.formats.FormatTools
-
- createPressure(Integer, Unit<Pressure>) - Static method in class loci.formats.FormatTools
-
- createPressure(T, Unit<Pressure>) - Static method in class loci.formats.FormatTools
-
- createProcessor(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- createRawImage() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Creates a BufferedImage
whose underlying data
array will be suitable for holding the raw decoded output of
the decodeRaw
method.
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
-
- createResolutionBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- createROIDeScaler(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Creates and returns the ROIDeScaler corresponding to the information
read from the codestream header and with the special additional
parameters from the parameter list.
- createRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
Constructs an OME root node.
- createSmallPalette(ColorModel) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- createStack(List<ImageProcessor>, List<String>, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader
-
Creates an image stack from the given image processors.
- createSwatch(Color) - Method in class loci.plugins.in.ColorDialog
-
- createTemperature(Double, Unit<Temperature>) - Static method in class loci.formats.FormatTools
-
- createTemperature(Integer, Unit<Temperature>) - Static method in class loci.formats.FormatTools
-
- createTemperature(T, Unit<Temperature>) - Static method in class loci.formats.FormatTools
-
- createTiffSaver() - Method in class loci.formats.out.TiffWriter
-
- createTileParts() - Method in class jj2000.j2k.util.CodestreamManipulator
-
This method creates the tileparts from the buffered tile headers,
packet headers and packet data
- createTime(Double, Unit<Time>) - Static method in class loci.formats.FormatTools
-
- createTime(Integer, Unit<Time>) - Static method in class loci.formats.FormatTools
-
- createTime(T, Unit<Time>) - Static method in class loci.formats.FormatTools
-
- createVirtualStack(ImportProcess, int, List<LUT>) - Method in class loci.plugins.in.ImagePlusReader
-
- createWriter(String, CoreMetadata, String) - Method in class loci.formats.tools.MakeTestOmeTiff
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
-
- createXMLBoxFromStandardNode(Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- CREATION_TIME - Static variable in class loci.formats.in.CellSensReader
-
- creationDate - Variable in class loci.formats.in.FV1000Reader
-
- creationDate - Variable in class loci.formats.in.ImaconReader
-
- creationDate - Variable in class loci.formats.in.InCellReader
-
- creationDate - Variable in class loci.formats.in.IvisionReader
-
- creationDate - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- creationDate - Variable in class loci.formats.in.PCIReader
-
- CREATOR - Static variable in class loci.formats.FormatTools
-
Value to use when setting creator/software fields in exported files.
- CREATOR_TAG - Static variable in class loci.formats.in.ImaconReader
-
- crg - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the CRG marker segment found in main header
- CRG() - Constructor for class jj2000.j2k.codestream.HeaderInfo.CRG
-
- CRG - Static variable in interface jj2000.j2k.codestream.Markers
-
Component registration (CRG): 0xFF63
- CRG_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for CRG marker segment found
- crgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN
-
- crop() - Method in class loci.plugins.util.RecordedImageProcessor
-
- cropBox - Variable in class loci.plugins.in.MainDialog
-
- CropDialog - Class in loci.plugins.in
-
Bio-Formats Importer crop options dialog box.
- CropDialog(ImportProcess) - Constructor for class loci.plugins.in.CropDialog
-
Creates a crop options dialog for the Bio-Formats Importer.
- cropRegion - Variable in class loci.plugins.in.ImporterOptions
-
- crossChan - Variable in class loci.formats.in.SDTInfo
-
Cross FCS routing channel number
when chan = crossChan and mod == crossMod - Auto FCS
otherwise - Cross FCS.
- CrosshairStrategy - Class in loci.formats.cache
-
A crosshair strategy caches planes extending from the the current
dimensional position along each individual axis, but not combinations of
axes.
- CrosshairStrategy(int[]) - Constructor for class loci.formats.cache.CrosshairStrategy
-
Constructs a crosshair strategy.
- crossMod - Variable in class loci.formats.in.SDTInfo
-
Cross FCS module number.
- crossMtResol - Variable in class loci.formats.in.SDTInfo
-
Macro time clock of cross FCS module in 0.1 ns units.
- cs - Variable in class jj2000.j2k.entropy.Progression
-
Component index for the start of a progression
- CS - Static variable in class loci.formats.in.DicomReader
-
- CS_2C - Static variable in class loci.formats.gui.TwoChannelColorSpace
-
- CSB_APPROX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CSB_ENUM_GREY - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CSB_ENUM_SRGB - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CSB_ENUM_YCC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CSB_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
Length of Colour Specification Box
- CSB_METH - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
Colour Specification Box Fields
- CSB_PREC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- cScroll - Variable in class loci.plugins.util.DataBrowser
-
- csiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- cSlider - Variable in class loci.formats.gui.ImageViewer
-
- cSliders - Variable in class loci.plugins.util.DataBrowser
-
- cspoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
-
- csRGB - Variable in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
-
- csRGB - Variable in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
-
- css - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Causal stripes specifications
- cStep - Variable in class loci.plugins.in.ImporterOptions
-
- CSV_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- cT - Variable in class jj2000.j2k.entropy.decoder.MQDecoder
-
The bit code counter
- cT - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The bit code counter
- ctp - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
-
The cumulative number of truncation points
- cts - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
The component transformation specifications
- cts - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
The component transformations specifications
- cts - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
The component transformations specifications
- cts - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
The inverse component transformation specifications
- ctX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The current tile horizontal index
- ctxtbufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Buffer for the contexts to use when sending buffered symbols to the
MQ-coder, for each thread.
- ctY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The current tile vertical index
- cType - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
- culx - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The horizontal coordinates of the upper-left corner of the active
tile, with respect to the canvas origin, in the component hi-res grid,
for each component.
- culy - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The vertical coordinates of the upper-left corner of the active tile,
with respect to the canvas origin, in the component hi-res grid, for
each component.
- curbyte - Variable in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
The position of the current byte to write
- curCycle - Variable in class loci.formats.in.SDTInfo
-
Current cycle (accumulation cycle in FLOW mode) -
(if multi-cycle measurement).
- curPage - Variable in class loci.formats.in.SDTInfo
-
Current measured page.
- currChangingElems - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- current - Variable in class loci.formats.ImageReader
-
Current form index.
- current - Variable in class loci.formats.ImageWriter
-
Current form index.
- current_layer - Variable in class loci.formats.in.ZeissTIFFHandler
-
- current_scaling - Variable in class loci.formats.in.ZeissTIFFHandler
-
- current_shape - Variable in class loci.formats.in.ZeissTIFFHandler
-
- current_tag - Variable in class loci.formats.in.ZeissTIFFHandler
-
- current_tagset - Variable in class loci.formats.in.ZeissTIFFHandler
-
- currentBit - Variable in class loci.formats.codec.BitBuffer
-
Deprecated.
- currentBlock - Variable in class loci.formats.in.APNGReader.PNGInputStream
-
- currentBlock - Variable in class loci.formats.in.PQBinReader
-
Block of time bins currently stored for faster loading.
- currentBlock - Variable in class loci.formats.in.SDTReader
-
Block of time bins currently stored for faster loading.
- currentByte - Variable in class loci.formats.codec.BitBuffer
-
Deprecated.
- currentCol - Variable in class loci.formats.in.InCellReader.InCellHandler
-
- currentElement - Variable in class loci.formats.in.AFIReader.AFIHandler
-
- currentElement - Variable in class loci.formats.in.IvisionReader.IvisionHandler
-
- currentField - Variable in class loci.formats.in.InCellReader.InCellHandler
-
- currentFile - Variable in class loci.formats.services.JHDFServiceImpl
-
- currentFile - Variable in class loci.formats.services.NetCDFServiceImpl
-
- currentFragment - Variable in class loci.formats.out.OMEXMLWriter
-
- currentFrame - Variable in class loci.formats.in.SPCReader
-
- currentIcsId - Variable in class loci.formats.in.ICSReader
-
Current filename.
- currentId - Variable in class loci.formats.FormatHandler
-
Name of current file.
- currentId - Variable in class loci.formats.ImageReader
-
Name of current file.
- currentId - Variable in class loci.formats.ImageWriter
-
Name of current file.
- currentIdsId - Variable in class loci.formats.in.ICSReader
-
- currentImage - Variable in class loci.formats.in.InCellReader.InCellHandler
-
- currentImage - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- currentImageFile - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler
-
- currentInflatedFrame - Variable in class loci.formats.in.OBFReader
-
- currentLine - Variable in class loci.formats.in.SPCReader
-
- currentName - Variable in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- currentName - Variable in class loci.formats.in.OperettaReader.OperettaHandler
-
- currentNo - Variable in class loci.formats.in.AmiraReader.HxRLE
-
- currentNo - Variable in class loci.formats.in.AmiraReader.HxZip
-
- currentPixel - Variable in class loci.formats.in.SPCReader
-
- currentPlane - Variable in class loci.formats.in.InCellReader.InCellHandler
-
- currentPos - Variable in class loci.formats.cache.Cache
-
Current dimensional position.
- currentProcessor - Variable in class loci.plugins.util.BFVirtualStack
-
- currentQName - Variable in class loci.formats.in.InCellReader.InCellHandler
-
- currentQName - Variable in class loci.formats.in.OMEXMLReader.OMEXMLHandler
-
- currentRow - Variable in class loci.formats.in.InCellReader.InCellHandler
-
- currentSlice - Variable in class loci.plugins.util.BFVirtualStack
-
- currentSubband - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The subband being dealt with in each component
- currentThumbnail - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler
-
- currentTile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
-
- currentTile - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- currentTileGrid - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
-
- currentTileGrid - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- currentValue - Variable in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- currentValue - Variable in class loci.formats.in.OperettaReader.OperettaHandler
-
- currentValue - Variable in class loci.formats.in.ScanrReader.ScanrHandler
-
- currIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- currLevel - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- currSize - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- curStep - Variable in class loci.formats.in.SDTInfo
-
Current step (if multi-step measurement).
- curTilePart - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
The current tile part being used
- curve - Variable in class loci.formats.codec.NikonCodecOptions
-
- CURVE - Static variable in class loci.formats.in.NikonReader
-
- curve - Variable in class loci.formats.in.NikonReader
-
- CUSTOM - Static variable in interface jj2000.j2k.wavelet.FilterTypes
-
User-defined filter: -1
- CUSTOM_BITS - Static variable in class loci.formats.in.SimplePCITiffReader
-
- CUSTOM_GRAYSCALE - Static variable in class loci.formats.in.CellSensReader
-
- CUSTOM_RENDERED - Static variable in class loci.formats.tiff.IFD
-
- CUSTOM_RENDERED_CUSTOM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "CustomRendered" tag.
- CUSTOM_RENDERED_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "CustomRendered" tag.
- customColors - Variable in class loci.plugins.in.ImporterOptions
-
- customFilter(ShortBuffer, Rectangle, Rectangle, int, int, TJTransform) - Method in interface org.libjpegturbo.turbojpeg.TJCustomFilter
-
A callback function that can be used to modify the DCT coefficients after
they are losslessly transformed but before they are transcoded to a new
JPEG file.
- CustomRendered() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.CustomRendered
-
- cutIn - Variable in class loci.formats.in.LeicaHandler.MultiBand
-
- cutInPopulated - Variable in class loci.formats.in.LeicaReader
-
- cutIns - Variable in class loci.formats.in.LIFReader
-
- cutOut - Variable in class loci.formats.in.LeicaHandler.MultiBand
-
- cutOutPopulated - Variable in class loci.formats.in.LeicaReader
-
- cutOuts - Variable in class loci.formats.in.LIFReader
-
- cycle - Variable in class loci.formats.in.PrairieMetadata.Sequence
-
cycle
of this <Sequence>
.
- cycleMax - Variable in class loci.formats.in.PrairieMetadata
-
Maximum cycle value.
- cycleMin - Variable in class loci.formats.in.PrairieMetadata
-
Minimum cycle value.
- cycles - Variable in class loci.formats.in.SDTInfo
-
Cycles (accumulation cycles in FLOW mode).
- CYTELL_MAGIC_STRING - Static variable in class loci.formats.in.InCellReader
-
- CZI_MAGIC_STRING - Static variable in class loci.formats.in.ZeissCZIReader
-
- gain - Variable in class loci.formats.in.BDReader
-
- gain - Variable in class loci.formats.in.BioRadReader
-
- gain - Variable in class loci.formats.in.BioRadSCNReader
-
- gain - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- gain - Variable in class loci.formats.in.FV1000Reader.ChannelData
-
- gain - Variable in class loci.formats.in.ImarisHDFReader
-
- gain - Variable in class loci.formats.in.InCellReader
-
- gain - Variable in class loci.formats.in.IvisionReader
-
- gain - Variable in class loci.formats.in.LeicaHandler.Channel
-
- gain - Variable in class loci.formats.in.MetamorphHandler
-
- gain - Variable in class loci.formats.in.MetamorphReader
-
- gain - Variable in class loci.formats.in.MicromanagerReader.Position
-
- gain - Variable in class loci.formats.in.ND2Handler
-
- gain - Variable in class loci.formats.in.NikonTiffReader
-
- gain - Variable in class loci.formats.in.OIRReader.Detector
-
- gain - Variable in class loci.formats.in.OpenlabReader
-
- gain - Variable in class loci.formats.in.ZeissCZIReader.Channel
-
- gain - Variable in class loci.formats.in.ZeissCZIReader
-
- gain - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel
-
- GAIN_CONTROL - Static variable in class loci.formats.tiff.IFD
-
- GAIN_CONTROL_HIGH_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "GainControl" tag.
- GAIN_CONTROL_HIGH_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "GainControl" tag.
- GAIN_CONTROL_LOW_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "GainControl" tag.
- GAIN_CONTROL_LOW_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "GainControl" tag.
- GAIN_CONTROL_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "GainControl" tag.
- GAIN_UNIT - Static variable in class loci.formats.in.CellSensReader
-
- GainControl() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.GainControl
-
- gains - Variable in class loci.formats.in.FluoviewReader
-
- gains - Variable in class loci.formats.in.LIFReader
-
- GAMMA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
The value of the third lifting step coefficient
- GAMMA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
The value of the third lifting step coefficient
- gamma - Variable in class loci.formats.in.GatanReader
-
- gamma(double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- GAMMA_CORRECTION - Static variable in class loci.formats.in.CellSensReader
-
- gammaBlue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- gammaGreen - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- gammaRed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- GatanDM2Reader - Class in loci.formats.in
-
GatanDM2Reader is the file format reader for Gatan .dm2 files.
- GatanDM2Reader() - Constructor for class loci.formats.in.GatanDM2Reader
-
Constructs a new Gatan .dm2 reader.
- GatanReader - Class in loci.formats.in
-
GatanReader is the file format reader for Gatan files.
- GatanReader() - Constructor for class loci.formats.in.GatanReader
-
Constructs a new Gatan reader.
- gb - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC
-
- gb - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD
-
- gb - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Number of guard bits off all component in the current tile.
- gbs - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
Number of guard bits specifications
- gbs - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer
-
The number of guard bits spec
- gbs - Variable in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
The guard bits specifications
- gcd(int, int) - Static method in class jj2000.j2k.util.MathUtil
-
Method that calculates the Greatest Common Divisor (GCD) of two
positive integer numbers.
- gcd(int[]) - Static method in class jj2000.j2k.util.MathUtil
-
Method that calculates the Greatest Common Divisor (GCD) of several
positive integer numbers.
- gct - Variable in class loci.formats.in.GIFReader
-
Global color table.
- GEL_DOMAIN - Static variable in class loci.formats.FormatTools
-
Identifies the gel and blot imaging domain.
- GelReader - Class in loci.formats.in
-
GelReader is the file format reader for
Molecular Dynamics GEL TIFF files.
- GelReader() - Constructor for class loci.formats.in.GelReader
-
Constructs a new GEL reader.
- generateScreen(int, int, int, int, int) - Method in class loci.formats.tools.FakeImage
-
Creates a fake SPW file/directory structure.
- GeoAsciiParams() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.GeoAsciiParams
-
- GeoDoubleParams() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.GeoDoubleParams
-
- GeoKeyDirectory() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet.GeoKeyDirectory
-
- GeoTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff
-
A class representing the tags found in a GeoTIFF IFD.
- GeoTIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
- GeoTIFFTagSet.GeoAsciiParams - Class in com.sun.media.imageio.plugins.tiff
-
- GeoTIFFTagSet.GeoDoubleParams - Class in com.sun.media.imageio.plugins.tiff
-
- GeoTIFFTagSet.GeoKeyDirectory - Class in com.sun.media.imageio.plugins.tiff
-
- GeoTIFFTagSet.ModelPixelScale - Class in com.sun.media.imageio.plugins.tiff
-
- GeoTIFFTagSet.ModelTiePoint - Class in com.sun.media.imageio.plugins.tiff
-
- GeoTIFFTagSet.ModelTransformation - Class in com.sun.media.imageio.plugins.tiff
-
- get(int) - Method in class loci.formats.codec.ByteVector
-
- get(int) - Static method in enum loci.formats.codec.CompressionType
-
Retrieves the compression by reverse lookup of its "code".
- get(int) - Static method in enum loci.formats.codec.JPEG2000BoxType
-
Retrieves the box type by reverse lookup of its "code".
- get(int) - Static method in enum loci.formats.codec.JPEG2000SegmentMarker
-
Retrieves the segment marker by reverse lookup of its "code".
- get(int, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- get(int) - Static method in enum loci.formats.in.BaseZeissReader.Charset
-
- get(int) - Static method in enum loci.formats.in.BaseZeissReader.DrawStyle
-
- get(int) - Static method in enum loci.formats.in.BaseZeissReader.FeatureType
-
- get(int) - Static method in enum loci.formats.in.BaseZeissReader.FillStyle
-
- get(int) - Static method in enum loci.formats.in.BaseZeissReader.LineEndPositions
-
- get(int) - Static method in enum loci.formats.in.BaseZeissReader.LineEndStyle
-
- get(int) - Static method in enum loci.formats.in.BaseZeissReader.PointStyle
-
- get(int) - Static method in enum loci.formats.in.BaseZeissReader.TextAlignment
-
- get(String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
.
- get(String, String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
.
- get(Object) - Method in interface loci.formats.in.PrairieMetadata.Value
-
- get(int) - Method in interface loci.formats.in.PrairieMetadata.Value
-
- get(Object) - Method in class loci.formats.in.PrairieMetadata.ValueItem
-
- get(int) - Method in class loci.formats.in.PrairieMetadata.ValueItem
-
- get(int) - Method in class loci.formats.in.PrairieMetadata.ValueTable
-
- get(int) - Static method in enum loci.formats.tiff.IFDType
-
Retrieves a IFD type by reverse lookup of its "code".
- get(int) - Method in class loci.formats.tiff.OnDemandLongArray
-
- get(int) - Static method in enum loci.formats.tiff.PhotoInterp
-
Retrieves a photometric interpretation by reverse lookup of its "code".
- get(int) - Static method in enum loci.formats.tiff.TiffCompression
-
Retrieves a TIFF compression instance by code.
- get(List<T>, int, T) - Method in class loci.plugins.in.ImporterOptions
-
- get(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- get(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- get16BitLookupTable() - Method in class loci.formats.ChannelFiller
-
- get16BitLookupTable() - Method in class loci.formats.DelegateReader
-
- get16BitLookupTable() - Method in class loci.formats.FileStitcher
-
- get16BitLookupTable() - Method in class loci.formats.FormatReader
-
- get16BitLookupTable() - Method in interface loci.formats.IFormatReader
-
Gets the 16-bit color lookup table associated with
the most recently opened image.
- get16BitLookupTable() - Method in class loci.formats.ImageReader
-
- get16BitLookupTable() - Method in class loci.formats.in.BaseZeissReader
-
- get16BitLookupTable() - Method in class loci.formats.in.DicomReader
-
- get16BitLookupTable() - Method in class loci.formats.in.FakeReader
-
- get16BitLookupTable() - Method in class loci.formats.in.FilePatternReader
-
- get16BitLookupTable() - Method in class loci.formats.in.FV1000Reader
-
- get16BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader
-
- get16BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader
-
- get16BitLookupTable() - Method in class loci.formats.in.InCellReader
-
- get16BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader
-
- get16BitLookupTable() - Method in class loci.formats.in.JPXReader
-
- get16BitLookupTable() - Method in class loci.formats.in.LeicaReader
-
- get16BitLookupTable() - Method in class loci.formats.in.LIFReader
-
- get16BitLookupTable() - Method in class loci.formats.in.MIASReader
-
- get16BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader
-
- get16BitLookupTable() - Method in class loci.formats.in.NativeND2Reader
-
- get16BitLookupTable() - Method in class loci.formats.in.OIRReader
-
- get16BitLookupTable() - Method in class loci.formats.in.OMETiffReader
-
- get16BitLookupTable() - Method in class loci.formats.in.PDSReader
-
- get16BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader
-
- get16BitLookupTable() - Method in class loci.formats.in.ScreenReader
-
- get16BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader
-
- get16BitLookupTable() - Method in class loci.formats.in.TCSReader
-
- get16BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader
-
- get16BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader
-
- get16BitLookupTable() - Method in class loci.formats.in.ZipReader
-
- get16BitLookupTable() - Method in class loci.formats.ReaderWrapper
-
- get8BitLookupTable() - Method in class loci.formats.ChannelFiller
-
- get8BitLookupTable() - Method in class loci.formats.DelegateReader
-
- get8BitLookupTable() - Method in class loci.formats.FileStitcher
-
- get8BitLookupTable() - Method in class loci.formats.FormatReader
-
- get8BitLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools
-
Converts an IndexColorModel to a 2D byte array.
- get8BitLookupTable() - Method in interface loci.formats.IFormatReader
-
Gets the 8-bit color lookup table associated with
the most recently opened image.
- get8BitLookupTable() - Method in class loci.formats.ImageReader
-
- get8BitLookupTable() - Method in class loci.formats.in.AmiraReader
-
- get8BitLookupTable() - Method in class loci.formats.in.APNGReader
-
- get8BitLookupTable() - Method in class loci.formats.in.AVIReader
-
- get8BitLookupTable() - Method in class loci.formats.in.BaseZeissReader
-
- get8BitLookupTable() - Method in class loci.formats.in.BioRadReader
-
- get8BitLookupTable() - Method in class loci.formats.in.BMPReader
-
- get8BitLookupTable() - Method in class loci.formats.in.CellH5Reader
-
- get8BitLookupTable() - Method in class loci.formats.in.DicomReader
-
- get8BitLookupTable() - Method in class loci.formats.in.FakeReader
-
- get8BitLookupTable() - Method in class loci.formats.in.FilePatternReader
-
- get8BitLookupTable() - Method in class loci.formats.in.GIFReader
-
- get8BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader
-
- get8BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader
-
- get8BitLookupTable() - Method in class loci.formats.in.InCellReader
-
- get8BitLookupTable() - Method in class loci.formats.in.IPWReader
-
- get8BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader
-
- get8BitLookupTable() - Method in class loci.formats.in.JPXReader
-
- get8BitLookupTable() - Method in class loci.formats.in.KhorosReader
-
- get8BitLookupTable() - Method in class loci.formats.in.LeicaReader
-
- get8BitLookupTable() - Method in class loci.formats.in.LIFReader
-
- get8BitLookupTable() - Method in class loci.formats.in.MIASReader
-
- get8BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader
-
- get8BitLookupTable() - Method in class loci.formats.in.NativeND2Reader
-
- get8BitLookupTable() - Method in class loci.formats.in.OIRReader
-
- get8BitLookupTable() - Method in class loci.formats.in.OMETiffReader
-
- get8BitLookupTable() - Method in class loci.formats.in.OpenlabReader
-
- get8BitLookupTable() - Method in class loci.formats.in.PCXReader
-
- get8BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader
-
- get8BitLookupTable() - Method in class loci.formats.in.PictReader
-
- get8BitLookupTable() - Method in class loci.formats.in.PSDReader
-
- get8BitLookupTable() - Method in class loci.formats.in.ScreenReader
-
- get8BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader
-
- get8BitLookupTable() - Method in class loci.formats.in.TargaReader
-
- get8BitLookupTable() - Method in class loci.formats.in.TCSReader
-
- get8BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader
-
- get8BitLookupTable() - Method in class loci.formats.in.ZeissLMSReader
-
- get8BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader
-
- get8BitLookupTable() - Method in class loci.formats.in.ZipReader
-
- get8BitLookupTable() - Method in class loci.formats.ReaderWrapper
-
- getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
This method wraps the protected method abortRequested
to allow the abortions be monitored by J2KReadState
.
- getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
This method wraps the protected method abortRequested
to allow the abortions be monitored by J2KRenderedImage
.
- getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
This method wraps the protected method abortRequested
to allow the abortions be monitored by J2KReadState
.
- getAbsoluteTime() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the absoluteTime
associated with this Frame
.
- getAcquisitionMode(String) - Method in class loci.formats.FormatReader
-
Retrieves an AcquisitionMode
enumeration
value for the given String.
- getActiveChannels() - Method in class loci.formats.in.PrairieMetadata
-
Gets the list of active channel indices, in sorted order.
- getActualNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Return the actual number of read bytes.
- getActualRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Return the actual decoding rate in bits per pixel.
- getAdjustedIndex(int) - Method in class loci.formats.FileStitcher
-
Gets the local reader index for use with the given image plane.
- getAdjustedOrder() - Method in class loci.formats.AxisGuesser
-
Gets the adjusted dimension order.
- getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher
-
- getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader
-
- getAdvancedSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader
-
Returns an array of FileInfo objects representing the files needed to
open the current series.
- getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader
-
- getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
-
- getAdvancedUsedFiles(boolean) - Method in class loci.formats.FileStitcher
-
- getAdvancedUsedFiles(boolean) - Method in class loci.formats.FormatReader
-
- getAdvancedUsedFiles(boolean) - Method in interface loci.formats.IFormatReader
-
Returns an array of FileInfo objects representing the files needed
to open this dataset.
- getAdvancedUsedFiles(boolean) - Method in class loci.formats.ImageReader
-
- getAdvancedUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
-
- getAlignROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets alignROI
- getAllChildren(Integer) - Method in class loci.formats.in.VolocityReader
-
- getAllCodeBlocks() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
This method gets all the coded code-blocks from the EBCOT entropy coder
for every component and every tile.
- getAllFiles(String) - Method in class loci.formats.FilePattern
-
- getAllNodes(IIOMetadataNode, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
- getAllowedTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
Returns a List
containing the allowed
TIFFTagSet
objects.
- getAlpha(int) - Method in class loci.formats.gui.Index16ColorModel
-
- getAlpha(int) - Method in class loci.formats.gui.SignedColorModel
-
- getAlpha(Object) - Method in class loci.formats.gui.SignedColorModel
-
- getAlpha(int) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getAlpha(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getAlphas() - Method in class loci.formats.gui.Index16ColorModel
-
Return the array of alpha color components.
- getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the negative support of the high-pass analysis
filter.
- getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the negative support of the high-pass analysis filter.
- getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the negative support of the high-pass analysis filter.
- getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the negative support of the high-pass analysis filter.
- getAnHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the negative support of the high-pass analysis
filter.
- getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the positive support of the high-pass analysis
filter.
- getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the positive support of the high-pass analysis filter.
- getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the positive support of the high-pass analysis filter.
- getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the positive support of the high-pass analysis filter.
- getAnHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the positive support of the high-pass analysis
filter.
- getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the negative support of the low-pass analysis
filter.
- getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the negative support of the low-pass analysis
filter.
- getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the negative support of the low-pass analysis filter.
- getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the negative support of the low-pass analysis filter.
- getAnLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the negative support of the low-pass analysis
filter.
- getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the positive support of the low-pass analysis
filter.
- getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the positive support of the low-pass analysis filter.
- getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the positive support of the low-pass analysis filter.
- getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the positive support of the low-pass analysis filter.
- getAnLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the positive support of the low-pass analysis
filter.
- getAnSubbandTree(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
-
Returns a reference to the root of subband tree structure representing
the subband decomposition for the specified tile-component.
- getAnSubbandTree(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Returns a reference to the subband tree structure representing the
subband decomposition for the specified tile-component.
- getAnSubbandTree(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
Returns a reference to the subband tree structure representing the
subband decomposition for the specified tile-component.
- getAnSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps
-
Returns a reference to the root of subband tree structure representing
the subband decomposition for the specified tile-component.
- getAnSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns a reference to the subband tree structure representing the
subband decomposition for the specified tile-component of the source.
- getApproximationAccuracy() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Returns ApproximationAccuracy
.
- getArcType(String) - Method in class loci.formats.FormatReader
-
Retrieves an ArcType
enumeration
value for the given String.
- getArray(String, int[], int[]) - Method in interface loci.formats.services.NetCDFService
-
Retrieves an HDF path's values.
- getArray(String, int[], int[]) - Method in class loci.formats.services.NetCDFServiceImpl
-
- getAsBytes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns the data as an uninterpreted array of
byte
s.
- getAsChars() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns TIFFTag.TIFF_SHORT
data as an array of
char
s (unsigned 16-bit integers).
- getAsDouble(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns data in any format as a double
.
- getAsDoubles() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns TIFFTag.TIFF_DOUBLE
data as an array of
double
s (64-bit floating-point values).
- getAsFloat(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns data in any format as a float
.
- getAsFloats() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns TIFFTag.TIFF_FLOAT
data as an array of
float
s (32-bit floating-point values).
- getAsInt(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns data in any format as an int
.
- getAsInts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns TIFFTag.TIFF_SLONG
data as an array of
int
s (signed 32-bit integers).
- getAsLong(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns data in any format as a long
.
- getAsLongs() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns TIFFTag.TIFF_LONG
or
TIFF_IFD_POINTER
data as an array of
long
s (signed 64-bit integers).
- getAsMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Converts the directory to a metadata object.
- getAsNativeNode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns the TIFFField
as a node named either
"TIFFField" or "TIFFIFD" as described in the
TIFF native image metadata specification.
- getAsRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns a TIFFTag.TIFF_RATIONAL data item as a two-element array
of ints.
- getAsRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns TIFFTag.TIFF_RATIONAL
data as an array of
2-element arrays of long
s.
- getAsShorts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns TIFFTag.TIFF_SSHORT
data as an array of
short
s (signed 16-bit integers).
- getAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Returns the association which associates a color channel to a color
component in the color space of the image.
- getAsSRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns a TIFFTag.TIFF_SRATIONAL
data item as a
two-element array of int
s.
- getAsSRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns TIFFTag.TIFF_SRATIONAL
data as an array of
2-element arrays of int
s.
- getAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns a TIFFTag.TIFF_ASCII
value as a
String
.
- getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
-
- getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- getAttribute(Node, String) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
- getAttribute(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream
-
Gets the attribute from the node.
- getAttribute(Node, String, String, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getAttribute(Node, String, String, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Extracts the value of the attribute from name.
- getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- getAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getAttributeDataType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttributeDefaultValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttributeDescription(String, String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttributeEnumerations(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttributeList() - Method in interface loci.formats.services.NetCDFService
-
Retrieves an exhaustive list of the HDF paths for all attributes in the
HDF document.
- getAttributeList() - Method in class loci.formats.services.NetCDFServiceImpl
-
- getAttributeListMaxLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttributeListMinLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttributeMaxValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttributeMinValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttributeNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttributeValue(String) - Method in interface loci.formats.services.NetCDFService
-
Retrieves an attribute's value.
- getAttributeValue(String) - Method in class loci.formats.services.NetCDFServiceImpl
-
- getAttributeValueType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAttrInfo(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getAutoscaleInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getAutoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getAutoThreshold(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getAvailableMemory() - Method in class loci.plugins.in.MemoryDialog
-
- getAxisCount(int) - Method in class loci.formats.AxisGuesser
-
Gets the number of axes in the pattern of the given type.
- getAxisCountC() - Method in class loci.formats.AxisGuesser
-
Gets the number of C axes in the pattern.
- getAxisCountS() - Method in class loci.formats.AxisGuesser
-
Gets the number of S axes in the pattern.
- getAxisCountT() - Method in class loci.formats.AxisGuesser
-
Gets the number of T axes in the pattern.
- getAxisCountZ() - Method in class loci.formats.AxisGuesser
-
Gets the number of Z axes in the pattern.
- getAxisGuesser() - Method in class loci.formats.FileStitcher.ExternalSeries
-
- getAxisGuesser() - Method in class loci.formats.FileStitcher
-
Gets the axis guesser object used to guess
which dimensional axes are which.
- getAxisType(String) - Static method in class loci.formats.AxisGuesser
-
Convert the given label to an axis type.
- getAxisTypes() - Method in class loci.formats.AxisGuesser
-
Gets the guessed axis type for each dimensional block.
- getAxisTypes() - Method in class loci.formats.FileStitcher
-
Gets the axis type for each dimensional block.
- getBackgroundValue() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getBandSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
- getBaseReader() - Method in class loci.plugins.in.ImportProcess
-
- getBestIndex(Color) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getBinaryOnlyOMEXML(String, String, String) - Method in class loci.formats.out.OMETiffWriter
-
- getBinning(String) - Method in class loci.formats.FormatReader
-
Retrieves an Binning
enumeration
value for the given String.
- getBinning() - Method in class loci.formats.in.MetamorphHandler
-
- getBinnings() - Method in class loci.formats.in.ND2Handler
-
- getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox
-
Returns the bit depths for all the image components.
- getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
Returns the bit depth for all the image components.
- getBitDepth() - Method in class loci.formats.in.PrairieMetadata
-
Gets the bitDepth
recorded in the configuration.
- getBitDepths() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Return the bit depths for all the color components.
- getBitOffset() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- getBits(int) - Method in class loci.formats.codec.BitBuffer
-
Deprecated.
Returns an int value representing the value of the bits read from
the byte array, from the current position.
- getBitsPerPixel(SampleModel) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Returns the number of bits per pixel.
- getBitsPerPixel() - Method in class loci.formats.FileStitcher
-
- getBitsPerPixel() - Method in class loci.formats.FormatReader
-
- getBitsPerPixel() - Method in interface loci.formats.IFormatReader
-
Gets the number of valid bits per pixel.
- getBitsPerPixel() - Method in class loci.formats.ImageReader
-
- getBitsPerPixel() - Method in class loci.formats.in.FilePatternReader
-
- getBitsPerPixel(int) - Method in class loci.formats.in.OBFReader
-
- getBitsPerPixel() - Method in class loci.formats.ReaderWrapper
-
- getBitsPerSample() - Method in class loci.formats.tiff.IFD
-
Retrieves the image's bits per sample (TIFF tag BitsPerSample) from a given
TIFF IFD.
- getBlankThumbBytes() - Method in class loci.formats.FileStitcher.ExternalSeries
-
- getBlock(int) - Method in class loci.formats.FilePattern
-
Gets the specified file pattern block (e.g., <0-9>).
- getBlock() - Method in class loci.formats.FilePatternBlock
-
Gets the block string.
- getBlock(int, String) - Method in class loci.formats.in.ScanrReader
-
- getBlockAligned() - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
This function returns the blockAligned flag
- getBlocks() - Method in class loci.formats.FilePattern
-
Gets all file pattern blocks.
- getBlue(int) - Method in class loci.formats.gui.Index16ColorModel
-
- getBlue(int) - Method in class loci.formats.gui.SignedColorModel
-
- getBlue(Object) - Method in class loci.formats.gui.SignedColorModel
-
- getBlue(int) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getBlue(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getBlueOffset(int) - Static method in class org.libjpegturbo.turbojpeg.TJ
-
For the given pixel format, returns the number of bytes that the blue
component is offset from the start of the pixel.
- getBlues() - Method in class loci.formats.gui.Index16ColorModel
-
Return the array of blue color components.
- getBoolean(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream
-
Gets the boolean type attribute.
- getBoolean(String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a Boolean.
- getBoolean(String, Boolean) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a Boolean.
- getBooleanAttribute(Node, String, boolean, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getBooleanAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getBooleanOption(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the boolean option with the given key.
- getBooleanValue(String) - Method in class loci.plugins.Slicer
-
Gets the value of the given macro key as a boolean.
- getBounds() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns a Rectangle indicating the image bounds.
- getBounds(BigInteger[], boolean) - Static method in class loci.formats.FilePattern
-
Gets a string containing start, end and step values
for a sorted list of numbers.
- getBoxClass(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Returns the Box class for the box with the provided type
.
- getBranchIndex(Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- getBrand() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
Returns the brand of this file type box.
- getBuffer() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
Returns the byte buffer.
- getBuffer() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Returns the byte-buffer used to store the codestream header.
- getBufferedImage() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getBufferLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Returns the number of bytes used in the codestream header's
buffer.
- getBuildDate(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getBypass() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets bypass
- getByte(int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
Returns the byte buffered at the given position in the buffer.
- getByte(SPEReader.SpeHeaderEntry) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to retrieve data values for Byte entries into the SPE header table
- getByte(int) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to retrieve a Byte value from the SPE header
- getByteArray(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream
-
Gets the integer type attribute.
- getByteArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Gets the byte array from an IIOMetadataNode
.
- getByteBuffer() - Method in class loci.formats.codec.BitBuffer
-
Deprecated.
Return the backing byte array.
- getByteElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Gets its byte value from an IIOMetadataNode
.
- getByteInputBuffer() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
Returns the underlying 'ByteInputBuffer' from where the MQ
coded input bytes are read.
- getByteOrder() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- getByteOrdering() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Returns the endianess (i.e., byte ordering) of the implementing
class.
- getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataOutput
-
Returns the endianness (i.e., byte ordering) of the implementing
class.
- getByteOrdering() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Returns the endianess (i.e., byte ordering) of the implementing
class.
- getByteOrdering() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Returns the endianess (i.e., byte ordering) of multi-byte I/O
operations.
- getBytes(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of unsigned bytes, one per channel.
- getBytes(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of unsigned bytes, one per channel.
- getBytes(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of unsigned bytes, one per channel.
- getBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools
-
Get the bytes from an image, merging the channels as necessary.
- getBytesPerElement() - Method in enum loci.formats.tiff.IFDType
-
Retrieves the number of bytes per element.
- getBytesPerPixel(int) - Static method in class loci.formats.FormatTools
-
Retrieves how many bytes per pixel the current plane or section has.
- getBytesPerPixel(String) - Static method in class loci.formats.FormatTools
-
Retrieves the number of bytes per pixel in the current plane.
- getBytesPerPixel(int) - Method in class loci.formats.in.LegacyND2Reader
-
- getBytesPerSample() - Method in class loci.formats.tiff.IFD
-
Retrieves the image's bytes per sample (derived from tag BitsPerSample)
from this IFD.
- getByteValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getC() - Method in class loci.formats.gui.ImageViewer
-
Gets the C value of the currently displayed image.
- getCache() - Method in class loci.formats.gui.CacheComponent
-
- getCache() - Method in class loci.plugins.util.BFVirtualStack
-
- getCacheListeners() - Method in class loci.formats.cache.Cache
-
- getCacheListeners() - Method in interface loci.formats.cache.CacheReporter
-
Gets a list of all registered status update listeners.
- getCacheListeners() - Method in class loci.formats.cache.CacheStrategy
-
- getCalibrationTable() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getCameraModel() - Method in class loci.formats.in.ND2Handler
-
- getCategory() - Method in class loci.formats.in.BaseZeissReader.Tag
-
- getCausalCXInfo() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets causalCXInfo
- getCBegin(int) - Method in class loci.plugins.in.ImporterOptions
-
- getCBegin(int) - Method in class loci.plugins.in.ImportProcess
-
- getCBlkHeight(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec
-
Returns the code-block height:
for the specified tile/component
for the specified tile
for the specified component
default value
The value returned depends on the value of the variable 'type' which
can take the following values :
SPEC_DEF -> Default value is returned.
- getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
-
Returns the code-block height for the specified tile and component.
- getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Returns the code-block height for the specified tile and component.
- getCBlkInfo() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Gets the reference to the CBlkInfo array
- getCBlkWidth(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec
-
Returns the code-block width :
for the specified tile/component
for the specified tile
for the specified component
default value
The value returned depends on the value of the variable 'type' which
can take the following values :
SPEC_DEF -> Default value is returned.
- getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
-
Returns the code-block width for the specified tile and component.
- getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Returns the code-block width for the specified tile and component.
- getCbULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the vertical code-block partition origin.
- getCbULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the horizontal code-block partition origin.Allowable values are
0 and 1, nothing else.
- getCbULX() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder
-
Returns the horizontal code-block partition origin.
- getCbULX() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
-
Returns the horizontal offset of the code-block partition.
- getCbULX() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
Returns the horizontal code-block partition origin.
- getCbULX() - Method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Returns the horizontal offset of the code-block partition.
- getCbULX() - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
Returns the horizontal offset of the code-block partition.
- getCbULX() - Method in class jj2000.j2k.roi.ROIDeScaler
-
Returns the horizontal code-block partition origin.
- getCbULX() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps
-
Returns the horizontal offset of the code-block partition.
- getCbULX() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the horizontal offset of the code-block partition.
- getCbULX() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData
-
Returns the horizontal code-block partition origin.
- getCbULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the vertical code-block partition origin.
- getCbULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the vertical code-block partition origin.
- getCbULY() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder
-
Returns the vertical code-block partition origin.
- getCbULY() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
-
Returns the vertical offset of the code-block partition.
- getCbULY() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
Returns the vertical code-block partition origin.
- getCbULY() - Method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Returns the vertical offset of the code-block partition.
- getCbULY() - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
Returns the vertical offset of the code-block partition.
- getCbULY() - Method in class jj2000.j2k.roi.ROIDeScaler
-
Returns the vertical code-block partition origin.
- getCbULY() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps
-
Returns the vertical offset of the code-block partition.
- getCbULY() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the vertical offset of the code-block partition.
- getCbULY() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData
-
Returns the vertical code-block partition origin Allowable values are 0
and 1, nothing else.
- getCCount(int) - Method in class loci.plugins.in.ImportProcess
-
- getCEnd(int) - Method in class loci.plugins.in.ImporterOptions
-
- getCEnd(int) - Method in class loci.plugins.in.ImportProcess
-
- getChannel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Returns the defined channels.
- getChannel(String) - Method in class loci.formats.in.CellomicsReader
-
- getChannel() - Method in class loci.formats.in.PrairieMetadata.PFile
-
Gets the channel
associated with this File
.
- getChannel(int) - Method in class loci.formats.in.ZeissTIFFReader
-
- getChannelColor(int) - Method in class loci.formats.in.LIFReader
-
- getChannelColorFromFile(String) - Method in class loci.formats.in.MIASReader
-
Get the color associated with the given file's channel.
- getChannelColors() - Method in class loci.formats.in.ND2Handler
-
- getChannelCount() - Method in class loci.formats.in.SDTReader
-
Gets the number of spectral channels.
- getChannelDescriptionNodes(Element) - Method in class loci.formats.in.LIFReader
-
- getChannelDimCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getChannelDimLength(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getChannelDimType(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getChannelFiller() - Method in class loci.plugins.in.ImportProcess
-
- getChannelGlobalMaximum(int) - Method in class loci.formats.MinMaxCalculator
-
Retrieves a specified channel's global maximum.
- getChannelGlobalMinimum(int) - Method in class loci.formats.MinMaxCalculator
-
Retrieves a specified channel's global minimum.
- getChannelIndex(Element) - Method in class loci.formats.in.LIFReader
-
- getChannelIndexOfCellObjectName(String) - Method in class loci.formats.in.CellH5Reader
-
- getChannelKnownMaximum(int) - Method in class loci.formats.MinMaxCalculator
-
Retrieves the specified channel's maximum based on the images that
have been read.
- getChannelKnownMinimum(int) - Method in class loci.formats.MinMaxCalculator
-
Retrieves the specified channel's minimum based on the images that have
been read.
- getChannelLabel(int) - Method in class loci.formats.in.TextReader
-
Gets the label for the given channel.
- getChannelName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getChannelName() - Method in class loci.formats.in.MetamorphHandler
-
- getChannelName() - Method in class loci.formats.in.PrairieMetadata.PFile
-
Gets the channelName
associated with this File
.
- getChannelNames() - Method in class loci.formats.in.MetamorphHandler
-
- getChannelNames() - Method in class loci.formats.in.ND2Handler
-
- getChannels(int) - Method in class loci.formats.in.LegacyND2Reader
-
- getChannelSeparator() - Method in class loci.plugins.in.ImportProcess
-
- getChar(int) - Method in class loci.formats.tools.AsciiImage
-
- getCheckboxes(GenericDialog) - Static method in class loci.plugins.util.WindowTools
-
- getChild(Element, String) - Static method in class loci.formats.in.CellVoyagerReader
-
- getChild(Element, String[]) - Static method in class loci.formats.in.CellVoyagerReader
-
- getChild() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getChildIndex(Integer, String) - Method in class loci.formats.in.VolocityReader
-
- getChildNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getChildNode(Node, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getChildNodes(Element) - Method in class loci.formats.in.OBFReader
-
- getChildPolicy(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getChildren(Element, String) - Static method in class loci.formats.in.CellVoyagerReader
-
- getChildText(Element, String[]) - Static method in class loci.formats.in.CellVoyagerReader
-
- getChildText(Element, String) - Static method in class loci.formats.in.CellVoyagerReader
-
- getChoices(GenericDialog) - Static method in class loci.plugins.util.WindowTools
-
- getClass(String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a class.
- getClass(String, Class<?>) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a class.
- getClasses() - Method in class loci.formats.ClassList
-
Gets the list of classes as an array.
- getCode() - Method in enum loci.formats.codec.CompressionType
-
Implemented as specified by the CodedEnum
I/F.
- getCode() - Method in enum loci.formats.codec.JPEG2000BoxType
-
Implemented as specified by the CodedEnum
I/F.
- getCode() - Method in enum loci.formats.codec.JPEG2000SegmentMarker
-
Implemented as specified by the CodedEnum
I/F.
- getCode() - Method in enum loci.formats.tiff.IFDType
-
- getCode() - Method in enum loci.formats.tiff.PhotoInterp
-
- getCode() - Method in enum loci.formats.tiff.TiffCompression
-
- getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Returns the specified coded code-block, for the specified component, in
the current tile.
- getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in interface jj2000.j2k.entropy.decoder.CodedCBlkDataSrcDec
-
Returns the specified coded code-block, for the specified component, in
the current tile.
- getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Returns the specified code-block in the current tile for the specified
component, as a copy (see below).
- getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec
-
Returns the specified code-block in the current tile for the specified
component, as a copy (see below).
- getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer
-
Returns the specified code-block in the current tile for the specified
component, as a copy (see below).
- getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler
-
Returns the specified code-block in the current tile for the specified
component, as a copy (see below).
- getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec
-
Returns the specified code-block in the current tile for the specified
component, as a copy (see below).
- getCodeBlockSize() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets codeBlockSize
.
- getCodeBlockSize() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets codeBlockSize
- getCodecName(int) - Method in class loci.formats.in.AVIReader
-
- getCodecName() - Method in enum loci.formats.tiff.TiffCompression
-
Retrieves the name of the TIFF compression codec.
- getCodecOptions() - Method in class loci.formats.tiff.TiffParser
-
Retrieves the current set of codec options being used to decompress pixel
data.
- getCodeSegSymbol() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets codeSegSymbol
- getCodestreamOffset() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Retrieves the offset to the first contiguous codestream.
- getCodestreamPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the pixel type as specified in the header.
- getCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method creates and returns an array of positions to contiguous
codestreams in the file
- getCodestreamSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the number of channels the image has as specified in the header.
- getCodestreamSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the width of the image as specified in the header.
- getCodestreamSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the height of the image as specified in the header.
- getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
Returns the currently set TIFFColorConverter
object,
or null
if none is set.
- getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
Returns the current TIFFColorConverter
object that
will be used to perform color conversion when writing the
image, or null
if none is set.
- getColorMap(IFD) - Method in class loci.formats.tiff.TiffParser
-
Retrieve the color map associated with the given IFD.
- getColorMode() - Method in class loci.plugins.in.ImporterOptions
-
- getColorModeInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getColorModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the ColorModel of the image.
- getColorModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- getColorModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getColorModel() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Returns the color model created from the palette box.
- getColorModel() - Method in class loci.formats.FormatWriter
-
- getColorModel() - Method in interface loci.formats.IFormatWriter
-
Gets the color model.
- getColorModel() - Method in class loci.formats.ImageWriter
-
- getColorModel() - Method in class loci.formats.WriterWrapper
-
- getColorModel() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getColorModes() - Method in class loci.plugins.in.ImporterOptions
-
- getColorSpace(Node) - Static method in class com.sun.media.imageio.stream.RawImageInputStream
-
- getColorTable(Node, String, boolean, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getColorValue(TextField) - Method in class loci.plugins.in.ColorDialog
-
- getColumn() - Method in class loci.formats.in.OMEXMLReader.BinData
-
- getColumn(String) - Method in class loci.formats.in.ScreenReader
-
- getColumn(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getColumNames(int) - Method in interface loci.formats.services.MetakitService
-
- getColumNames(int) - Method in class loci.formats.services.MetakitServiceImpl
-
- getColumnNames(String) - Method in interface loci.formats.services.MetakitService
-
- getColumnNames(String) - Method in class loci.formats.services.MetakitServiceImpl
-
- getColumnTypes(int) - Method in interface loci.formats.services.MetakitService
-
- getColumnTypes(String) - Method in interface loci.formats.services.MetakitService
-
- getColumnTypes(int) - Method in class loci.formats.services.MetakitServiceImpl
-
- getColumnTypes(String) - Method in class loci.formats.services.MetakitServiceImpl
-
- getComment(int, int) - Method in class loci.formats.in.MetamorphReader
-
- getComment() - Method in class loci.formats.tiff.IFD
-
Convenience method for obtaining the ImageDescription from this IFD.
- getComment() - Method in class loci.formats.tiff.TiffParser
-
Convenience method for obtaining a stream's first ImageDescription.
- getComments() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getComments() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Retrieves the list of comments stored in the file.
- getCompanion() - Method in class loci.formats.out.OMETiffWriter
-
- getCompatibilityList() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
Returns the compatibilty list of this file type box.
- getCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component.
- getCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component.
- getCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Apply forward component transformation associated with the current
tile.
- getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component, using the
'transfer type' specified in the block given as argument.
- getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component.
- getCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component.
- getCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Apply inverse component transformation associated with the current
tile.
- getCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component.
- getCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Returns a block of image data containing the specifed rectangular area,
in the specified component, as a copy (see below).
- getCompDef(int) - Method in class jj2000.j2k.ModuleSpec
-
Gets default value of the specified component.
- getCompHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the height in pixels of the specified component in the current
tile.
- getCompImgHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the height in pixels of the specified component in the overall
image.
- getCompImgHeight(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- getCompImgHeight(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the height in pixels of the specified component in the overall
image, for the given (component) resolution level.
- getCompImgHeight(int) - Method in interface jj2000.j2k.image.ImgData
-
Returns the height in pixels of the specified component in the overall
image.
- getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the height in pixels of the specified component in the overall
image.
- getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the height in pixels of the specified component in the
overall image.
- getCompImgHeight(int) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the height in pixels of the specified component in the overall
image.
- getCompImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the height in pixels of the specified component in the overall
image.
- getCompImgHeight(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the height in pixels of the specified component in the overall
image, for the given resolution level.
- getCompImgHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the height in pixels of the specified component in the overall
image, for the given resolution level.
- getCompImgWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the width in pixels of the specified component in the overall
image.
- getCompImgWidth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
Width of the specified tile-component
- getCompImgWidth(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the width in pixels of the specified component in the overall
image, for the given (component) resolution level.
- getCompImgWidth(int) - Method in interface jj2000.j2k.image.ImgData
-
Returns the width in pixels of the specified component in the overall
image.
- getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the width in pixels of the specified component in the overall
image.
- getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the width in pixels of the specified component in the overall
image.
- getCompImgWidth(int) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the width in pixels of the specified component in the overall
image.
- getCompImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the width in pixels of the specified component in the overall
image.
- getCompImgWidth(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the width in pixels of the specified component in the overall
image, for the given resolution level.
- getCompImgWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the width in pixels of the specified component in the overall
image, for the given resolution level.
- getComponent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
- getComponent(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getComponentAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
- getComponentTransformation() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets componentTransformation
.
- getComponentTransformation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets componentTransformation
- getComponentType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
- getCompressedSize() - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Returns the size of the image (in bytes) generated by the most recent
compress/encode operation.
- getCompression() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getCompression() - Method in enum loci.formats.codec.CompressionType
-
Returns the compression.
- getCompression(String) - Method in class loci.formats.FormatReader
-
Retrieves an Compression
enumeration
value for the given String.
- getCompression() - Method in class loci.formats.FormatWriter
-
- getCompression() - Method in interface loci.formats.IFormatWriter
-
Gets the current compression type.
- getCompression() - Method in class loci.formats.ImageWriter
-
- getCompression(int) - Method in class loci.formats.in.OBFReader
-
- getCompression() - Method in class loci.formats.tiff.IFD
-
Retrieves the image's compression type (TIFF tag Compression) from
this IFD.
- getCompression() - Method in class loci.formats.WriterWrapper
-
- getCompressionCodecOptions(IFD) - Method in enum loci.formats.tiff.TiffCompression
-
Creates a set of codec options for compression.
- getCompressionCodecOptions(IFD, CodecOptions) - Method in enum loci.formats.tiff.TiffCompression
-
Creates a set of codec options for compression.
- getCompressionMap() - Static method in enum loci.formats.tiff.TiffCompression
-
- getCompressionTagValue() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Retrieve the value to be assigned to the TIFF Compression tag
in the TIFF image metadata.
- getCompressionType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Retrieve the name of the compression type supported by this compressor.
- getCompressionType(String) - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- getCompressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
Returns the compression type.
- getCompressionTypes() - Method in class loci.formats.FormatWriter
-
- getCompressionTypes() - Method in interface loci.formats.IFormatWriter
-
Gets the available compression types.
- getCompressionTypes() - Method in class loci.formats.ImageWriter
-
- getCompressionTypes() - Method in class loci.formats.WriterWrapper
-
- getCompSize(IndexColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Gets the size of the components or the bit depth for all the color
coomponents.
- getCompSubsX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the component subsampling factor in the horizontal direction,
for the specified component.
- getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the component subsampling factor in the horizontal direction,
for the specified component.
- getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the component sub-sampling factor, with respect to the
reference grid, along the horizontal direction for the specified
component.
- getCompSubsX(int) - Method in interface jj2000.j2k.image.ImgData
-
Returns the component subsampling factor in the horizontal direction,
for the specified component.
- getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the component subsampling factor in the horizontal direction,
for the specified component.
- getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the component subsampling factor in the horizontal direction,
for the specified component.
- getCompSubsX(int) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the component subsampling factor in the horizontal direction,
for the specified component.
- getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the component subsampling factor in the horizontal
direction, for the specified component.
- getCompSubsX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the component subsampling factor in the horizontal direction,
for the specified component.
- getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the component subsampling factor in the horizontal direction,
for the specified component.
- getCompSubsY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the component subsampling factor in the vertical direction, for
the specified component.
- getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the component subsampling factor in the vertical direction, for
the specified component.
- getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the component sub-sampling factor, with respect to the
reference grid, along the vertical direction for the specified
component.
- getCompSubsY(int) - Method in interface jj2000.j2k.image.ImgData
-
Returns the component subsampling factor in the vertical direction, for
the specified component.
- getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the component subsampling factor in the vertical direction, for
the specified component.
- getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the component subsampling factor in the vertical direction, for
the specified component.
- getCompSubsY(int) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the component subsampling factor in the vertical direction, for
the specified component.
- getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the component subsampling factor in the vertical
direction, for the specified component.
- getCompSubsY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the component subsampling factor in the vertical direction, for
the specified component.
- getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the component subsampling factor in the vertical direction, for
the specified component.
- getCompULX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the horizontal coordinate of the upper-left corner of the
active tile, with respect to the canvas origin, in the component
coordinates, for the specified component.
- getCompULX(int) - Method in interface jj2000.j2k.image.ImgData
-
Returns the horizontal coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULX(int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the horizontal coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULX(int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the horizontal coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULX(int) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the horizontal coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULX(int) - Method in class jj2000.j2k.image.Tiler
-
Returns the horizontal coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the horizontal coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the vertical coordinate of the upper-left corner of the active
tile, with respect to the canvas origin, in the component coordinates,
for the specified component.
- getCompULY(int) - Method in interface jj2000.j2k.image.ImgData
-
Returns the vertical coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULY(int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the vertical coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULY(int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the vertical coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULY(int) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the vertical coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULY(int) - Method in class jj2000.j2k.image.Tiler
-
Returns the vertical coordinate of the upper-left corner of the
specified component in the current tile.
- getCompULY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the vertical coordinate of the upper-left corner of the
specified component in the current tile.
- getCompWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the width in pixels of the specified component in the current
tile.
- getConcatenateInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getConfig(String) - Method in class loci.formats.in.PrairieMetadata
-
Gets the value
of the given configuration key
.
- getConfig() - Method in class loci.formats.in.PrairieMetadata
-
Gets the map of configuration key/value pairs.
- getConstraintsForCell(int, int, Container, int) - Static method in class loci.plugins.config.SpringUtilities
-
- getContent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Returns the box content in byte array.
- getContents() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources
-
- getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources
-
- getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources
-
- getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources
-
- getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources
-
- getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources
-
- getContents() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources
-
- getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources
-
- getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources
-
- getContrastMethod(String) - Method in class loci.formats.FormatReader
-
Retrieves an ContrastMethod
enumeration
value for the given String.
- getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.COD
-
- getCopy(int) - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a copy of this object
- getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- getCopy() - Method in class jj2000.j2k.decoder.DecoderSpecs
-
Returns a copy of the current object.
- getCopy() - Method in class jj2000.j2k.ModuleSpec
-
- getCoreIndex() - Method in class loci.formats.FileStitcher
-
- getCoreIndex() - Method in class loci.formats.FormatReader
-
- getCoreIndex() - Method in interface loci.formats.IFormatReader
-
Return the index into CoreMetadata of the current resolution/series.
- getCoreIndex() - Method in class loci.formats.ImageReader
-
- getCoreIndex() - Method in class loci.formats.in.FilePatternReader
-
- getCoreIndex() - Method in class loci.formats.ReaderWrapper
-
- getCoreMetadataList() - Method in class loci.formats.DimensionSwapper
-
- getCoreMetadataList() - Method in class loci.formats.FileStitcher
-
- getCoreMetadataList() - Method in class loci.formats.FormatReader
-
- getCoreMetadataList() - Method in interface loci.formats.IFormatReader
-
Obtains the core metadata values for the current file.
- getCoreMetadataList() - Method in class loci.formats.ImageReader
-
- getCoreMetadataList() - Method in class loci.formats.in.FilePatternReader
-
- getCoreMetadataList() - Method in class loci.formats.in.LeicaHandler
-
- getCoreMetadataList() - Method in class loci.formats.in.ND2Handler
-
- getCoreMetadataList() - Method in class loci.formats.ReaderWrapper
-
- getCorrection(String) - Method in class loci.formats.FormatReader
-
Retrieves an Correction
enumeration
value for the given String.
- getCorrection() - Method in class loci.formats.in.ND2Handler
-
- getCount() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns the number of data items present in the field.
- getCount() - Method in class loci.formats.FilePattern
-
Gets the number of elements for each pattern block.
- getCreationDate() - Method in interface loci.formats.services.EXIFService
-
- getCreationDate() - Method in class loci.formats.services.EXIFServiceImpl
-
- getCropInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getCropRegion(int) - Method in class loci.plugins.in.ImporterOptions
-
- getCropRegion(int) - Method in class loci.plugins.in.ImportProcess
-
- getCStep(int) - Method in class loci.plugins.in.ImporterOptions
-
- getCStep(int) - Method in class loci.plugins.in.ImportProcess
-
- getCurrentColorModel() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getCurrentFile() - Method in class loci.formats.FormatReader
-
- getCurrentFile() - Method in interface loci.formats.IFormatReader
-
Returns the current file.
- getCurrentFile() - Method in class loci.formats.ImageReader
-
- getCurrentFile() - Method in class loci.formats.ReaderWrapper
-
- getCurrentFile() - Method in class loci.plugins.in.ImportProcess
-
- getCurrentFile(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getCurrentPos() - Method in class loci.formats.cache.Cache
-
Gets the current dimensional position.
- getCustomColor(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- getCustomColorKey(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- getCutIn(Double) - Static method in class loci.formats.FormatTools
-
- getCutOut(Double) - Static method in class loci.formats.FormatTools
-
- getCycle() - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the cycle
associated with this Sequence
.
- getCycleCount() - Method in class loci.formats.in.PrairieMetadata
-
Gets the number of recorded cycles.
- getCycleMax() - Method in class loci.formats.in.PrairieMetadata
-
Gets the maximum cycle value.
- getCycleMin() - Method in class loci.formats.in.PrairieMetadata
-
Gets the minimum cycle value.
- getCZTag(IFD) - Method in class loci.formats.in.ZeissLSMReader
-
- getData() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns a reference to the data object associated with the field.
- getData() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the entire image in a single Raster.
- getData(Rectangle) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns an arbitrary rectangular region of the RenderedImage
in a Raster.
- getData() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
Returns the UUID data of this box.
- getData() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getData(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getData() - Method in class jj2000.j2k.image.DataBlk
-
Returns the array containing the data, or null if there is no
data.
- getData() - Method in class jj2000.j2k.image.DataBlkFloat
-
Returns the array containing the data, or null if there is no
data array.
- getData() - Method in class jj2000.j2k.image.DataBlkInt
-
Returns the array containing the data, or null if there is no
data array.
- getData(DataBlk, int, boolean) - Method in class jj2000.j2k.image.ImgDataConverter
-
Implements the 'getInternCompData()' and the 'getCompData()'
methods.
- getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
Returns the array containing the data, or null if there is no data.
- getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
-
Returns the array containing the data, or null if there is no
data array.
- getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
-
Returns the array containing the data, or null if there is no
data array.
- getData() - Method in class loci.formats.gui.SignedByteBuffer
-
- getData(int) - Method in class loci.formats.gui.SignedByteBuffer
-
- getData() - Method in class loci.formats.gui.SignedShortBuffer
-
- getData(int) - Method in class loci.formats.gui.SignedShortBuffer
-
- getData() - Method in class loci.formats.gui.UnsignedIntBuffer
-
- getData(int) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- getDataElements(int, Object) - Method in class loci.formats.gui.Index16ColorModel
-
- getDataElements(int, Object) - Method in class loci.formats.gui.SignedColorModel
-
- getDataElements(int, Object) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getDataFloat() - Method in class jj2000.j2k.image.DataBlkFloat
-
Returns the array containing the data, or null if there is no
data array.
- getDataFloat() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
-
Returns the array containing the data, or null if there is no
data array.
- getDataInt() - Method in class jj2000.j2k.image.DataBlkInt
-
Returns the array containing the data, or null if there is no
data array.
- getDataInt() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
-
Returns the array containing the data, or null if there is no
data array.
- getDatasetStructureDescription() - Method in class loci.formats.FormatReader
-
- getDatasetStructureDescription() - Method in interface loci.formats.IFormatReader
-
Returns a short description of the dataset structure.
- getDatasetStructureDescription() - Method in class loci.formats.ImageReader
-
- getDatasetStructureDescription() - Method in class loci.formats.in.FilePatternReader
-
- getDatasetStructureDescription() - Method in class loci.formats.ReaderWrapper
-
- getDataType() - Method in class jj2000.j2k.image.DataBlk
-
Returns the data type of the DataBlk object, as
defined in this class.
- getDataType() - Method in class jj2000.j2k.image.DataBlkFloat
-
Returns the identifier of this data type, TYPE_FLOAT,
as defined in DataBlk.
- getDataType() - Method in class jj2000.j2k.image.DataBlkInt
-
Returns the identifier of this data type, TYPE_INT,
as defined in DataBlk.
- getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
Returns the type of data on which this filter works, as defined
in the DataBlk interface, which is always TYPE_FLOAT for this
class.
- getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
Returns the type of data on which this filter works, as defined
in the DataBlk interface, which is always TYPE_INT for this
class.
- getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
Returns the data type of the CBlkWTData object, as
defined in the DataBlk class.
- getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
-
Returns the identifier of this data type, TYPE_FLOAT,
as defined in DataBlk.
- getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
-
Returns the data type of this object, always DataBlk.TYPE_INT.
- getDataType(int, int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc
-
Return the data type of this CBlkWTDataSrc for the given
component in the current tile.
- getDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Return the data type of this CBlkWTDataSrc.
- getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat
-
Returns the type of data on which this filter works, as defined
in the DataBlk interface, which is always TYPE_FLOAT for this
class.
- getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt
-
Returns the type of data on which this filter works, as defined
in the DataBlk interface, which is always TYPE_INT for this
class.
- getDataType() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the type of data on which this filter works, as defined
in the DataBlk interface.
- getDataTypeFromNumBits(int, boolean) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- getDataTypes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Returns a bit mask indicating the set of data types that may
be used to store the data associated with the tag.
- getDataTypeSize(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Return the number of bits occupied by dataType
which must be one of the DataBuffer
TYPE
s.
- getDate() - Method in class loci.formats.in.MetamorphHandler
-
- getDate() - Method in class loci.formats.in.ND2Handler
-
- getDate() - Method in class loci.formats.in.PrairieMetadata
-
Gets the date of the acquisition.
- getDatestamp() - Method in class loci.formats.in.SVSReader
-
- getDecoderSpecs() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Return the DecoderSpecs instance filled when reading the headers
- getDecodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam
-
Gets decodingRate
.
- getDecomp(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT
-
Returns the wavelet tree decomposition.
- getDecomp(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the wavelet tree decomposition.
- getDecompLevels(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT
-
Returns the number of decomposition levels that are applied to
obtain the LL band, in the specified tile-component.
- getDecompLevels(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the number of decomposition levels that are applied to the LL
band, in the specified tile-component.
- getDecompositionLevel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets decompositionLevel
- getDecompressedStream(String) - Method in class loci.formats.in.CellomicsReader
-
- getDecompType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec
-
Returns the decomposition type to be used in component 'n' and tile
't'.
- getDecSpecType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec
-
Returns the type of specification for the decomposition in the
specified component and tile.
- getDefault() - Method in class jj2000.j2k.ModuleSpec
-
Gets default value for this module.
- getDefault() - Method in class loci.plugins.prefs.BooleanOption
-
Gets the default value of the option.
- getDefault() - Method in class loci.plugins.prefs.DoubleOption
-
Gets the default value of the option.
- getDefault() - Method in class loci.plugins.prefs.StringOption
-
Gets the default value of the option.
- getDefaultColorModel() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getDefaultConfiguration() - Static method in class loci.formats.gui.AWTImageTools
-
Gets the default graphics configuration for the environment.
- getDefaultCustomColor(int) - Method in class loci.plugins.in.ImporterOptions
-
- getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- getDefaultOptions() - Static method in class loci.formats.codec.CodecOptions
-
Return CodecOptions with reasonable default values.
- getDefaultOptions() - Static method in class loci.formats.codec.JPEG2000CodecOptions
-
Return JPEG2000CodecOptions with reasonable default values.
- getDefaultOptions(CodecOptions) - Static method in class loci.formats.codec.JPEG2000CodecOptions
-
Return JPEG2000CodecOptions using the given CodecOptions as the default.
- getDefaultReaderClasses() - Static method in class loci.formats.ImageReader
-
- getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- getDefaultValue(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the default value of the string option with the given key.
- getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- getDefaultWriterClasses() - Static method in class loci.formats.ImageWriter
-
- getDenom() - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor
-
Returns denominator
- getDenominator() - Method in class loci.formats.tiff.TiffRational
-
Gets this number's denominator.
- getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.DequantizerParams
-
Returns the type of the dequantizer for which the parameters are.
- getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams
-
Returns the type of the dequantizer for which the parameters are.
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
-
- getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
-
- getDescription() - Method in class loci.formats.gui.ComboFileFilter
-
Returns the filter's description.
- getDescription() - Method in class loci.formats.gui.ExtensionFileFilter
-
Gets the filter's description.
- getDescription() - Method in class loci.formats.gui.FormatFileFilter
-
Gets the filter's description.
- getDescription() - Method in class loci.formats.gui.NoExtensionFileFilter
-
Gets the filter's description.
- getDeser() - Method in class loci.formats.Memoizer
-
Returns a configured Kryo
instance.
- getDestination(ImageReadParam, Iterator, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getDestinationRegion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- getDestinationType(ImageReadParam, Iterator) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Gets the destination image type.
- getDetectorType(String) - Method in class loci.formats.FormatReader
-
Retrieves an DetectorType
enumeration
value for the given String.
- getDeviceSubtype(String) - Method in class loci.formats.in.CellSensReader
-
- getDimension(String) - Method in class loci.formats.in.ZeissTIFFHandler.Scaling
-
Get a dimension by its index.
- getDimension(String) - Method in interface loci.formats.services.NetCDFService
-
Retrieves the length of a dimension.
- getDimension(String) - Method in class loci.formats.services.NetCDFServiceImpl
-
- getDimensionDescriptionNodes(Element) - Method in class loci.formats.in.LIFReader
-
- getDimensionOrder() - Method in class loci.formats.ChannelMerger
-
- getDimensionOrder() - Method in class loci.formats.ChannelSeparator
-
- getDimensionOrder() - Method in class loci.formats.DimensionSwapper
-
- getDimensionOrder() - Method in class loci.formats.FileStitcher
-
- getDimensionOrder() - Method in class loci.formats.FormatReader
-
- getDimensionOrder(String) - Method in class loci.formats.FormatReader
-
Retrieves an DimensionOrder
enumeration
value for the given String.
- getDimensionOrder() - Method in interface loci.formats.IFormatReader
-
Gets a five-character string representing the
dimension order in which planes will be returned.
- getDimensionOrder() - Method in class loci.formats.ImageReader
-
- getDimensionOrder() - Method in class loci.formats.in.FilePatternReader
-
- getDimensionOrder() - Method in class loci.formats.ReaderWrapper
-
- getDimensionOrder(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getDimensionSwapper() - Method in class loci.plugins.in.ImportProcess
-
- getDirectory(String) - Method in class loci.formats.services.NetCDFServiceImpl
-
- getDirectoryAsIFD(TIFFDirectory) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Converts a TIFFDirectory
to a TIFFIFD
.
- getDocument() - Method in class loci.formats.gui.XMLWindow
-
Gets the XML document currently being displayed within the window.
- getDocumentBytes(String) - Method in interface loci.formats.services.POIService
-
Retrieve all of the raw bytes that correspond to the given file name.
- getDocumentBytes(String, int) - Method in interface loci.formats.services.POIService
-
Retrieve at most 'length' bytes that correspond to the given file name.
- getDocumentBytes(String) - Method in class loci.formats.services.POIServiceImpl
-
- getDocumentBytes(String, int) - Method in class loci.formats.services.POIServiceImpl
-
- getDocumentList() - Method in interface loci.formats.services.POIService
-
Retrieve a list of all files in the current POI file system.
- getDocumentList() - Method in class loci.formats.services.POIServiceImpl
-
- getDocumentStream(String) - Method in interface loci.formats.services.POIService
-
Retrieve a RandomAccessInputStream corresponding to the given file name.
- getDocumentStream(String) - Method in class loci.formats.services.POIServiceImpl
-
- getDomains() - Method in class loci.formats.FormatReader
-
- getDomains() - Method in interface loci.formats.IFormatReader
-
Returns the list of domains represented by the current file.
- getDomains() - Method in class loci.formats.ImageReader
-
- getDomains() - Method in class loci.formats.in.CellomicsReader
-
- getDomains() - Method in class loci.formats.in.FilePatternReader
-
- getDomains() - Method in class loci.formats.in.ICSReader
-
- getDomains() - Method in class loci.formats.in.MetamorphTiffReader
-
- getDomains() - Method in class loci.formats.in.NiftiReader
-
- getDomains() - Method in class loci.formats.in.OMETiffReader
-
- getDomains() - Method in class loci.formats.in.OMEXMLReader
-
- getDomains() - Method in class loci.formats.ReaderWrapper
-
- getDouble(String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a Double.
- getDouble(String, Double) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a Double.
- getDoubleAttribute(Node, String, double, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getDoubleAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getDoubles(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of doubles, one per channel.
- getDoubles(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of doubles, one per channel.
- getDoubles(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of doubles, one per channel.
- getDoubleValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getDoubleValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock
-
- getDT(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getDX(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getDY(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getDZ(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getEffectiveSeries(int) - Method in class loci.formats.in.ZeissLSMReader
-
- getEffectiveSizeC() - Method in class loci.formats.FormatReader
-
- getEffectiveSizeC() - Method in interface loci.formats.IFormatReader
-
Gets the effective size of the C dimension, guaranteeing that
getEffectiveSizeC() * getSizeZ() * getSizeT() == getImageCount()
regardless of the result of isRGB().
- getEffectiveSizeC() - Method in class loci.formats.ImageReader
-
- getEffectiveSizeC() - Method in class loci.formats.in.FilePatternReader
-
- getEffectiveSizeC() - Method in class loci.formats.ReaderWrapper
-
- getEffectiveSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getElem(int) - Method in class loci.formats.gui.SignedByteBuffer
-
- getElem(int, int) - Method in class loci.formats.gui.SignedByteBuffer
-
- getElem(int, int) - Method in class loci.formats.gui.SignedShortBuffer
-
- getElem(int) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- getElem(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- getElemDouble(int) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- getElemDouble(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- getElement(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getElementDescription(String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getElementInfo(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getElementMaxChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getElementMinChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
This method will be called by the getNativeNodeForSimpleBox of the
class Box to get the element names.
- getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
This method will be called by the getNativeNodeForSimpleBox of the
class Box to get the element names.
- getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
This method will be called by the getNativeNodeForSimpleBox of the
class Box to get the element names.
- getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
This method will be called by the getNativeNodeForSimpleBox of the
class Box to get the element names.
- getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
This method will be called by the getNativeNodeForSimpleBox of the
class Box to get the element names.
- getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox
-
This method will be called by the getNativeNodeForSimpleBox of the
class Box to get the element names.
- getElements() - Method in class loci.formats.FilePattern
-
Gets individual elements for each pattern block.
- getElements() - Method in class loci.formats.FilePatternBlock
-
Gets all block elements.
- getElementSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
- getElementSize(String) - Method in interface loci.formats.services.JHDFService
-
Retrieves the Element Size of a dataset in Byte.
- getElementSize(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- getElemFloat(int) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- getElemFloat(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- getEmission() - Method in class loci.formats.in.SVSReader
-
- getEmissionWavelength(Double) - Static method in class loci.formats.FormatTools
-
- getEmissionWavelengths() - Method in class loci.formats.in.ND2Handler
-
- getEncodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets encodingRate
.
- getEncodingRate() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets encodingRate
- getEndX() - Method in class loci.formats.in.SPEReader.SpeROI
-
- getEndY() - Method in class loci.formats.in.SPEReader.SpeROI
-
- getEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.FloatIM3Record
-
Return all entries as an array
- getEntry(IRandomAccess, int) - Method in class loci.formats.in.IM3Reader.BooleanIM3Record
-
Get the boolean value at the given index
- getEntry(IRandomAccess, int) - Method in class loci.formats.in.IM3Reader.FloatIM3Record
-
Get the floating-point value at the given index
- getEntry(IRandomAccess, int) - Method in class loci.formats.in.IM3Reader.IntIM3Record
-
Get the integer value at the given index
- getEnum(String, T) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as an enumerated type.
- getEnumeratedAttribute(Node, String, String[], int, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getEnumeratedAttribute(Node, String, String[]) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getEnumeratedColorSpace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Returns the enumerated color space.
- getEPH() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets EPH
.
- getEPH() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets EPH
- getErrorMessage() - Method in class loci.formats.FilePattern
-
Gets the file pattern error message, if any.
- getExcitation() - Method in class loci.formats.in.SVSReader
-
- getExcitationWavelength(Double) - Static method in class loci.formats.FormatTools
-
- getExcitationWavelengths() - Method in class loci.formats.in.ND2Handler
-
- getExifIFDs() - Method in class loci.formats.tiff.TiffParser
-
Returns EXIF IFDs.
- getExifTagName(int) - Static method in class loci.formats.in.BaseTiffReader
-
- getExperimenterName() - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- getExperimentType(String) - Method in class loci.formats.FormatReader
-
Retrieves an ExperimentType
enumeration
value for the given String.
- getExposures() - Method in class loci.formats.in.MetamorphHandler
-
- getExposureTime() - Method in class loci.formats.in.SVSReader
-
- getExposureTimes() - Method in class loci.formats.in.ND2Handler
-
- getExtension() - Method in class loci.formats.gui.ExtensionFileFilter
-
Gets the filter's first valid extension.
- getExtensionFunctions() - Method in class loci.plugins.macro.MacroFunctions
-
- getExtensions() - Method in class loci.formats.gui.ExtensionFileFilter
-
Gets the filter's valid extensions.
- getExternalSeries() - Method in class loci.formats.FileStitcher
-
- getExternalSeries(int) - Method in class loci.formats.FileStitcher
-
- getExtraLayers(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo
-
Returns the number of extra layers to add after the optimization point
'n', but before optimization point 'n+1'.
- getExtraLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Returns the box extra length.
- getExtraSeries(String) - Method in class loci.formats.in.ZeissLSMReader
-
- getf(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getf(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getField(String) - Method in class loci.formats.in.CellomicsReader
-
- getField(String) - Method in class loci.formats.in.FlexReader
-
- getField(int) - Method in class loci.formats.in.FluoviewReader
-
- getField(String) - Method in class loci.formats.in.MetamorphTiffReader
-
- getFieldFromSeries(int) - Method in class loci.formats.in.InCellReader
-
- getFieldIndex() - Method in class loci.formats.in.ND2Handler
-
- getFieldName(int) - Static method in class loci.formats.tiff.IFD
-
This method uses reflection to scan the values of this class's
static fields, returning the first matching field's name.
- getFilamentType(String) - Method in class loci.formats.FormatReader
-
Retrieves an FilamentType
enumeration
value for the given String.
- getFile(int, int) - Method in class loci.formats.in.CellWorxReader
-
Retrieve the .pnl file corresponding to the given series.
- getFile(String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a file object.
- getFile(String, File) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a file object.
- getFile(String) - Method in class loci.formats.in.FV1000Reader
-
- getFile(int) - Method in class loci.formats.in.MicromanagerReader.Position
-
- getFile(String, int, int, int, int, int) - Method in class loci.formats.in.MicromanagerReader.Position
-
- getFile(int) - Method in class loci.formats.in.PerkinElmerReader
-
- getFile(int) - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the File
with the given channel
.
- getFile(int, int, int) - Method in class loci.formats.in.PrairieMetadata
-
Gets the Frame
at the given (cycle
, index
,
channel
).
- getFile(int, int) - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the Frame
at the given (cycle
, index
,
channel
).
- getFile(Integer, Location) - Method in class loci.formats.in.VolocityReader
-
- getFile() - Method in interface loci.formats.services.JHDFService
-
Retrieves the current initialized file path.
- getFile() - Method in class loci.formats.services.JHDFServiceImpl
-
- getFile() - Method in interface loci.formats.services.NetCDFService
-
Retrieves the current initialized file path.
- getFile() - Method in class loci.formats.services.NetCDFServiceImpl
-
- getFileHandle(String) - Method in class loci.formats.in.FlexReader
-
- getFileIndex(int) - Method in class loci.formats.in.PerkinElmerReader
-
- getFilename(int, int, IFormatReader, String) - Static method in class loci.formats.FormatTools
-
- getFilename(int, int, IFormatReader, String, boolean) - Static method in class loci.formats.FormatTools
-
- getFilename(int, int, MetadataRetrieve, String, boolean) - Static method in class loci.formats.FormatTools
-
- getFilename(int, int) - Method in class loci.formats.in.BDReader
-
- getFilename() - Method in class loci.formats.in.PrairieMetadata.PFile
-
Gets the filename
associated with this File
.
- getFilenames(String, IFormatReader) - Static method in class loci.formats.FormatTools
-
- getFilePattern() - Method in class loci.formats.AxisGuesser
-
Gets the file pattern.
- getFilePattern() - Method in class loci.formats.FileStitcher.ExternalSeries
-
- getFilePattern() - Method in class loci.formats.FileStitcher
-
Gets the file pattern object used to build the list of files.
- getFiles() - Method in class loci.formats.FilePattern
-
Gets a listing of all files matching this file pattern.
- getFiles() - Method in class loci.formats.FileStitcher.ExternalSeries
-
- getFileSize(String) - Method in interface loci.formats.services.POIService
-
Retrieve the total number of bytes in the given file.
- getFileSize(String) - Method in class loci.formats.services.POIServiceImpl
-
- getFileStitcher() - Method in class loci.plugins.in.ImportProcess
-
- getFileVersion(RandomAccessInputStream) - Method in class loci.formats.in.OBFReader
-
- getFillRule(String) - Method in class loci.formats.FormatReader
-
Retrieves an FillRule
enumeration
value for the given String.
- getFilter() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets filters
.
- getFilters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets filters
- getFilters() - Method in class loci.formats.gui.ComboFileFilter
-
Gets the list of file filters forming this filter combination.
- getFilterType(int, AnWTFilterSpec) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec
-
Get the filter type common to all component of a given tile.
- getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Returns the type of filter used according to the FilterTypes
interface.
- getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the type of filter used according to the FilterTypes
interface(W9x7).
- getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the type of filter used according to the FilterTypes interface
(W5x3).
- getFilterType(String) - Method in class loci.formats.FormatReader
-
Retrieves an FilterType
enumeration
value for the given String.
- getFirst() - Method in class loci.formats.FilePattern
-
Gets the START element for all blocks.
- getFirst() - Method in class loci.formats.FilePatternBlock
-
Gets the first element in a range block.
- getFirstChannel(String) - Method in class loci.formats.in.SlidebookTiffReader
-
- getFirstChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- getFirstChild(Element, String) - Method in class loci.formats.in.OIRReader
-
- getFirstChild(Element, String) - Method in class loci.formats.in.PrairieMetadata
-
Gets the first child element with the given name.
- getFirstCodeStreamLength() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method returns the length of the first contiguous codestreams in
the file
- getFirstCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method returns the position of the first contiguous codestreams in
the file
- getFirstComment(int) - Method in class loci.formats.in.MetamorphReader
-
Returns the TIFF comment from the first IFD of the first STK file in the
given series.
- getFirstFile() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the first File
of the Sequence
.
- getFirstFrame() - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the first Frame
of the Sequence
.
- getFirstIFD() - Method in class loci.formats.tiff.TiffParser
-
Gets the first IFD within the TIFF file, or null
if the input source is not a valid TIFF file.
- getFirstIFDEntry(int) - Method in class loci.formats.tiff.TiffParser
-
Retrieve a given entry from the first IFD in the stream.
- getFirstNode(Element, String) - Method in class loci.formats.in.ZeissCZIReader
-
- getFirstNodeValue(Element, String) - Method in class loci.formats.in.ZeissCZIReader
-
- getFirstOffset() - Method in class loci.formats.tiff.TiffParser
-
Gets offset to the first IFD, or -1 if stream is not TIFF.
- getFirstSequence() - Method in class loci.formats.in.PrairieMetadata
-
Gets the first Sequence
.
- getFirstTimeInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getFixedHeader() - Method in class loci.formats.services.JPEGTurboServiceImpl
-
- getFixedPoint(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the position of the fixed point in the specified component
(i.e.
- getFixedPoint(int) - Method in interface jj2000.j2k.image.BlkImgDataSrc
-
Returns the position of the fixed point in the specified component, or
equivalently the number of fractional bits.
- getFixedPoint(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Returns the position of the fixed point in the specified
component.
- getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataConverter
-
Returns the position of the fixed point in the specified
component.
- getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the position of the fixed point in the specified
component.
- getFixedPoint(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Returns the position of the fixed point in the specified component
(i.e.
- getFixedPoint(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Returns the position of the fixed point in the specified
component.
- getFixedPoint(int) - Method in class jj2000.j2k.image.Tiler
-
Returns the position of the fixed point in the specified
component.
- getFixedPoint(int) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer
-
Returns the position of the fixed point in the output data for the
specified component.
- getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc
-
Returns the position of the fixed point in the specified component, or
equivalently the number of fractional bits.
- getFixedPoint(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the position of the fixed point in the specified
component.
- getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec
-
Returns the position of the fixed point in the specified component, or
equivalently the number of fractional bits.
- getFixedPoint(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Returns the position of the fixed point in the specified
component.
- getFlags() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
Returns the Flags
data element.
- getFlexFiles() - Method in class loci.formats.in.FlexReader.MeaHandler
-
- getFloat(String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a Float.
- getFloat(String, Float) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a Float.
- getFloatArray() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getFloatAttribute(Node, String, float, boolean) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getFloatAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getFloats(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of floats, one per channel.
- getFloats(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of floats, one per channel.
- getFloats(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of floats, one per channel.
- getFloatValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock
-
- getFlushedPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- getFontFamily(String) - Method in class loci.formats.FormatReader
-
Retrieves an FontFamily
enumeration
value for the given String.
- getFontMetrics() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getFontSize(Integer) - Static method in class loci.formats.FormatTools
-
- getFontStyle(String) - Method in class loci.formats.FormatReader
-
Retrieves an FontStyle
enumeration
value for the given String.
- getForceThumbnailsInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getFormat() - Method in class loci.formats.FormatHandler
-
- getFormat() - Method in interface loci.formats.IFormatHandler
-
Gets the name of this file format.
- getFormat(String) - Method in class loci.formats.ImageReader
-
Gets a string describing the file format for the given file.
- getFormat() - Method in class loci.formats.ImageReader
-
- getFormat(String) - Method in class loci.formats.ImageWriter
-
Gets a string describing the file format for the given file.
- getFormat() - Method in class loci.formats.ImageWriter
-
- getFormat() - Method in class loci.formats.ReaderWrapper
-
- getFormat() - Method in class loci.formats.WriterWrapper
-
- getFormat(String, String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getFormatName() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getFrame(int, int) - Method in class loci.formats.in.PrairieMetadata
-
Gets the Frame
at the given (cycle
and index
).
- getFrame() - Method in class loci.formats.in.PrairieMetadata.PFile
-
Gets the <Frame>
containing this <File>
.
- getFrame(int) - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the Frame
with the given index
.
- getFramesPerSecond() - Method in class loci.formats.FormatWriter
-
- getFramesPerSecond() - Method in interface loci.formats.IFormatWriter
-
Gets the frames per second to use when writing.
- getFramesPerSecond() - Method in class loci.formats.ImageWriter
-
- getFramesPerSecond() - Method in class loci.formats.WriterWrapper
-
- getFromParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getGain() - Method in class loci.formats.in.MetamorphHandler
-
- getGain(int) - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the c
th gain for this Frame
.
- getGains() - Method in class loci.formats.in.ND2Handler
-
- getGifPaletteSize(int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
According do GIF specification size of clor table (palette here)
must be in range from 2 to 256 and must be power of 2.
- getGlobalMeta(String) - Method in class loci.formats.FormatReader
-
Gets a value from the global metadata table.
- getGlobalMetadata() - Method in class loci.formats.FormatReader
-
- getGlobalMetadata() - Method in interface loci.formats.IFormatReader
-
Obtains the hashtable containing the metadata field/value pairs from
the current file.
- getGlobalMetadata() - Method in class loci.formats.ImageReader
-
- getGlobalMetadata() - Method in class loci.formats.in.FilePatternReader
-
- getGlobalMetadata() - Method in class loci.formats.in.LeicaHandler
-
- getGlobalMetadata() - Method in class loci.formats.ReaderWrapper
-
- getGrandchildren(Element, String) - Method in class loci.formats.in.ZeissCZIReader
-
- getGrandchildren(Element, String, String) - Method in class loci.formats.in.ZeissCZIReader
-
- getGreen(int) - Method in class loci.formats.gui.Index16ColorModel
-
- getGreen(int) - Method in class loci.formats.gui.SignedColorModel
-
- getGreen(Object) - Method in class loci.formats.gui.SignedColorModel
-
- getGreen(int) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getGreen(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getGreenOffset(int) - Static method in class org.libjpegturbo.turbojpeg.TJ
-
For the given pixel format, returns the number of bytes that the green
component is offset from the start of the pixel.
- getGreens() - Method in class loci.formats.gui.Index16ColorModel
-
Return the array of green color components.
- getGroup(String) - Method in class loci.formats.services.NetCDFServiceImpl
-
Retrieves a group based on its fully qualified path.
- getGroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getGroupX() - Method in class loci.formats.in.SPEReader.SpeROI
-
- getGroupY() - Method in class loci.formats.in.SPEReader.SpeROI
-
- getGuardBits() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets guardBits
- getHeader() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- getHeader() - Method in class loci.formats.in.SPEReader.SpeHeader
-
- getHeaderInfo(int, String) - Method in class loci.formats.in.DicomReader
-
- getHeaderPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the pixel type as specified in the header.
- getHeaderSize() - Method in class loci.formats.in.SPEReader.SpeHeader
-
- getHeaderSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the number of channels the image has as specified in the header.
- getHeaderSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the width of the image as specified in the header.
- getHeaderSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the height of the image as specified in the header.
- getHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the height of the image.
- getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
Returns the height of the image.
- getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- getHeight() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- getHeight() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder
-
Returns the number of leafs along the vertical direction.
- getHeight() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Returns the number of leafs along the vertical direction.
- getHeight() - Method in class loci.formats.codec.JPEGTileDecoder
-
- getHeight() - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- getHeight(int) - Method in class loci.formats.in.LegacyND2Reader
-
- getHeight() - Method in interface loci.formats.services.LuraWaveService
-
Wraps lwfDecoder.getHeight()
- getHeight() - Method in class loci.formats.services.LuraWaveServiceImpl
-
- getHeight(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack
-
- getHeight() - Method in class loci.plugins.util.BFVirtualStack
-
- getHeight() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getHeight() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Returns the height of the JPEG image associated with this decompressor
instance.
- getHFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
-
Returns the horizontal analysis filters to be used in component 'n' and
tile 't'.
- getHFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
-
Returns the horizontal analysis filters to be used in component 'n' and
tile 't'.
- getHH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Returns the HH child subband of this subband.
- getHH() - Method in class jj2000.j2k.wavelet.Subband
-
Returns the HH child subband of this subband.
- getHH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
Returns the HH child subband of this subband.
- getHistogram() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getHistogramMax() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getHistogramMin() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getHistogramSize() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getHL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Returns the HL (horizontal high-pass) child subband of this
subband.
- getHL() - Method in class jj2000.j2k.wavelet.Subband
-
Returns the HL (horizontal high-pass) child subband of this subband.
- getHL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
Returns the HL (horizontal high-pass) child subband of this
subband.
- getHorAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT
-
Returns the horizontal analysis wavelet filters used in each
level, for the specified tile-component.
- getHorAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the horizontal analysis wavelet filters used in each level, for
the specified component and tile.
- getHorizontalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
Return the horizontal resolution.
- getHorWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
This function returns the horizontal wavelet filter relevant to this
subband
- getHorWFilter() - Method in class jj2000.j2k.wavelet.Subband
-
This function returns the horizontal wavelet filter relevant to this
subband
- getHorWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
This function returns the horizontal wavelet filter relevant to this
subband
- getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Returns the time-reversed high-pass synthesis waveform of the
filter, which is the high-pass filter.
- getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the time-reversed high-pass synthesis waveform of the
filter, which is the high-pass filter.
- getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the time-reversed high-pass synthesis waveform of the filter,
which is the high-pass filter.
- getHPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Returns the equivalent high-pass synthesis waveform of a
cascade of filters, given the syhthesis waveform of the
previous stage.
- getICCProfile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Returns the ICC color profile in this color specification box.
- getId(String) - Method in class loci.formats.tools.MakeTestOmeTiff
-
- getId() - Method in class loci.plugins.in.ImporterOptions
-
- getIdInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getIdle(boolean) - Method in class jj2000.j2k.util.ThreadPool
-
Returns and idle thread and removes it from the list of idle
threads.
- getIdLocation() - Method in class loci.plugins.in.ImportProcess
-
- getIdName() - Method in class loci.plugins.in.ImportProcess
-
- getIdx() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
Returns the index of this compressor.
- getIFD(long) - Method in class loci.formats.tiff.TiffParser
-
Gets the IFD stored at the given offset.
- getIFDAsTree(TIFFIFD, String, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getIFDIndex(int, int) - Method in class loci.formats.in.NDPIReader
-
- getIFDIndex(int) - Method in class loci.formats.in.SVSReader
-
- getIFDIntArray(int) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry values in int format
from this IFD, performing some error checking.
- getIFDIntValue(int) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry value in int format from this IFD,
or -1 if the given directory does not exist.
- getIFDIntValue(int, int) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry value in int format from this IFD,
performing some error checking.
- getIFDLongArray(int) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry values in long format
from this IFD, performing some error checking.
- getIFDLongValue(int, long) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry value in long format from this IFD,
performing some error checking.
- getIFDOffsets() - Method in class loci.formats.tiff.TiffParser
-
Gets the offsets to every IFD in the file.
- getIFDRationalValue(int) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry value in rational format from this IFD,
performing some error checking.
- getIFDs() - Method in class loci.formats.in.MinimalTiffReader
-
Gets the list of IFDs associated with the current TIFF's image planes.
- getIFDs() - Method in class loci.formats.tiff.TiffParser
-
Returns all IFDs in the file.
- getIFDShortArray(int) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry values in short format
from this IFD, performing some error checking.
- getIFDStringValue(int) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry value as a string from this IFD,
performing some error checking.
- getIFDTagName(int) - Static method in class loci.formats.tiff.IFD
-
Gets the name of the IFD tag encoded by the given number.
- getIFDTextValue(int) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry value as a string (regardless of type).
- getIFDValue(int) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry value from this IFD.
- getIFDValue(int, Class) - Method in class loci.formats.tiff.IFD
-
Gets the given directory entry value from this IFD,
performing some error checking.
- getIFDValue(TiffIFDEntry) - Method in class loci.formats.tiff.TiffParser
-
Retrieve the value corresponding to the given TiffIFDEntry.
- getIlluminationType(String) - Method in class loci.formats.FormatReader
-
Retrieves an IlluminationType
enumeration
value for the given String.
- getImage() - Method in class loci.formats.gui.ImageViewer
-
Gets the currently displayed image.
- getImage(byte[], int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getImageCount() - Method in class loci.formats.ChannelMerger
-
- getImageCount() - Method in class loci.formats.ChannelSeparator
-
- getImageCount() - Method in class loci.formats.FileStitcher
-
- getImageCount() - Method in class loci.formats.FormatReader
-
- getImageCount() - Method in interface loci.formats.IFormatReader
-
Determines the number of image planes in the current file.
- getImageCount() - Method in class loci.formats.ImageReader
-
- getImageCount() - Method in class loci.formats.in.FilePatternReader
-
- getImageCount() - Method in class loci.formats.ReaderWrapper
-
- getImageCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getImageCreationDate() - Method in class loci.formats.in.BaseTiffReader
-
Retrieves the image creation date.
- getImageCreationDate(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getImageData(int, int, int) - Method in class loci.formats.in.CellH5Reader
-
- getImageData(int, int, int, int, int) - Method in class loci.formats.in.ImarisHDFReader
-
Retrieve an array corresponding to the specified image tile.
- getImageDescription(Element) - Method in class loci.formats.in.LIFReader
-
- getImageDimension(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
Retrieves the dimnsion of the imageIndex
th image.
- getImageIndex() - Method in class loci.formats.gui.ImageViewer
-
Gets the index of the currently displayed image.
- getImageIndex(int) - Method in class loci.formats.in.FluoviewReader
-
- getImageIndex(String) - Method in class loci.formats.in.PCIReader
-
Get the image index from the image file name.
- getImageInputStream() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
Returns an ImageInputStream
for reading.
- getImageLength() - Method in class loci.formats.tiff.IFD
-
Retrieves the image's length (TIFF tag ImageLength) from a given TIFF IFD.
- getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- getImageMetadata(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
Retrieves image metadata with non-core nodes removed.
- getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- getImageName() - Method in class loci.formats.in.MetamorphHandler
-
- getImageNumber(String, int) - Method in class loci.formats.in.ZeissZVIReader
-
- getImageOffset(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
Retrieves the image offset of the imageIndex
th image.
- getImageReader() - Method in class loci.plugins.in.ImportProcess
-
- getImageSequence(int) - Method in class loci.formats.in.DeltavisionReader
-
Get the image sequence string.
- getImagesPerFile() - Method in class loci.formats.FileStitcher.ExternalSeries
-
- getImagesPerFile(String, IFormatReader) - Static method in class loci.formats.FormatTools
-
- getImageType() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
Retrieves the image type.
- getImageType(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getImageType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- getImageWidth() - Method in class loci.formats.tiff.IFD
-
Retrieves the image's width (TIFF tag ImageWidth) from a given TIFF IFD.
- getImagingDevice() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the imaging device associated with this Frame
.
- getImgHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the overall height of the image in pixels.
- getImgHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the overall height of the image in pixels, for the given
resolution level.
- getImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the image height in the reference grid.
- getImgHeight() - Method in interface jj2000.j2k.image.ImgData
-
Returns the overall height of the image in pixels.
- getImgHeight() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the overall height of the image in pixels.
- getImgHeight() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the overall height of the image in pixels.
- getImgHeight() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the overall height of the image in pixels.
- getImgHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the overall height of the image in pixels.
- getImgHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the overall height of the image in pixels, for the given
resolution level.
- getImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the overall height of the image in pixels, for the given
resolution level.
- getImgRes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the image resolution level to reconstruct from the
codestream.
- getImgULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid at the specified
resolution level.
- getImgULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Return the horizontal upper-left coordinate of the image in the
reference grid.
- getImgULX() - Method in interface jj2000.j2k.image.ImgData
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULX() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULX() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULX() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULX() - Method in class jj2000.j2k.image.Tiler
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid at the specified
resolution level.
- getImgULX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the horizontal coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid at the specified
resolution level.
- getImgULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid at the specified
resolution level.
- getImgULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Return the vertical upper-left coordinate of the image in the reference
grid.
- getImgULY() - Method in interface jj2000.j2k.image.ImgData
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULY() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULY() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULY() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULY() - Method in class jj2000.j2k.image.Tiler
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid.
- getImgULY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid at the specified
resolution level.
- getImgULY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the vertical coordinate of the image origin, the top-left
corner, in the canvas system, on the reference grid at the specified
resolution level.
- getImgWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the overall width of the image in pixels.
- getImgWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the overall width of the image in pixels, for the given (image)
resolution level.
- getImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the image width in the reference grid.
- getImgWidth() - Method in interface jj2000.j2k.image.ImgData
-
Returns the overall width of the image in pixels.
- getImgWidth() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the overall width of the image in pixels.
- getImgWidth() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the overall width of the image in pixels.
- getImgWidth() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the overall width of the image in pixels.
- getImgWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the overall width of the image in pixels.
- getImgWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the overall width of the image in pixels, for the given
resolution level.
- getImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the overall width of the image in pixels, for the given
resolution level.
- getImmersion(String) - Method in class loci.formats.FormatReader
-
Retrieves an Immersion
enumeration
value for the given String.
- getImmersion() - Method in class loci.formats.in.ND2Handler
-
- getImmersion() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Extracts the immersion from the objective lens string.
- getImplementationType(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the implementation type of this wavelet transform, WT_IMPL_FULL
(full-page based transform).
- getImplementationType(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Returns the implementation type of this wavelet transform, WT_IMPL_FULL
(full-page based transform).
- getImplementationType(int) - Method in interface jj2000.j2k.wavelet.WaveletTransform
-
Returns the implementation type of this wavelet transform
(WT_IMPL_LINE or WT_IMPL_FRAME) for the specified component,
in the current tile.
- getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the implementation type of this filter, as defined in
this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
WT_FILTER_FLOAT_CONVOL.
- getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the implementation type of this filter, as defined in this
class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
WT_FILTER_FLOAT_CONVOL.
- getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the implementation type of this filter, as defined in this
class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
WT_FILTER_FLOAT_CONVOL.
- getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the implementation type of this filter, as defined in this
class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
WT_FILTER_FLOAT_CONVOL.
- getImplType() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the implementation type of this filter, as defined in
this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
WT_FILTER_FLOAT_CONVOL.
- getIndex() - Method in class loci.formats.cache.CacheEvent
-
Gets the index relevant to the cache update, if any.
- getIndex(int, int, int, int, int, int) - Method in class loci.formats.ChannelMerger
-
- getIndex(int, int, int) - Method in class loci.formats.ChannelMerger
-
- getIndex(int, int, int) - Method in class loci.formats.ChannelSeparator
-
- getIndex(int, int, int, int, int, int) - Method in class loci.formats.ChannelSeparator
-
- getIndex(int, int, int) - Method in class loci.formats.DimensionSwapper
-
- getIndex(int, int, int, int, int, int) - Method in class loci.formats.DimensionSwapper
-
- getIndex(int, int, int) - Method in class loci.formats.FileStitcher
-
- getIndex(int, int, int, int, int, int) - Method in class loci.formats.FileStitcher
-
- getIndex(int, int, int) - Method in class loci.formats.FormatReader
-
- getIndex(int, int, int, int, int, int) - Method in class loci.formats.FormatReader
-
- getIndex(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools
-
Gets the rasterized index corresponding
to the given Z, C and T coordinates (real sizes).
- getIndex(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Gets the rasterized index corresponding to the given Z, C, T,
ModuloZ, ModuloC and ModuloT coordinates (effective sizes).
- getIndex(String, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Gets the rasterized index corresponding
to the given Z, C and T coordinates (real sizes).
- getIndex(String, int, int, int, int, int, int, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Gets the rasterized index corresponding to the given Z, C, T,
ModuloZ, ModuloC, ModuloT coordinates (effective sizes).
- getIndex(int, int, int) - Method in interface loci.formats.IFormatReader
-
Gets the rasterized index corresponding
to the given Z, C and T coordinates (real sizes).
- getIndex(int, int, int, int, int, int) - Method in interface loci.formats.IFormatReader
-
Gets the rasterized index corresponding to the given Z, C, T,
moduloZ, moduloC and moduloT coordinates (effective sizes).
- getIndex(int, int, int) - Method in class loci.formats.ImageReader
-
- getIndex(int, int, int, int, int, int) - Method in class loci.formats.ImageReader
-
- getIndex() - Method in class loci.formats.in.BaseZeissReader.Tag
-
- getIndex(int, int, int) - Method in class loci.formats.in.FilePatternReader
-
- getIndex() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the index
associated with this Frame
.
- getIndex(int, int, int) - Method in class loci.formats.ReaderWrapper
-
- getIndex(int, int, int, int, int, int) - Method in class loci.formats.ReaderWrapper
-
- getIndex(Double, Double, Double, Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getIndexColorModel() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- getIndexCount() - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the number of recorded indices at this Sequence
.
- getIndexedImage() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- getIndexMax() - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the maximum index value.
- getIndexMin() - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the minimum index value.
- getInfo() - Method in class loci.formats.in.SDTReader
-
Gets object containing SDT header information.
- getInfo() - Method in class loci.plugins.prefs.Option
-
Gets documentation about the option.
- getInfo(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the documentation for the option with the given key.
- getIniFile(String) - Method in class loci.formats.in.FV1000Reader
-
- getInputOrder() - Method in class loci.formats.DimensionSwapper
-
- getInputOrder(int) - Method in class loci.plugins.in.ImporterOptions
-
- getInputStream(String) - Method in interface loci.formats.services.POIService
-
Retrieve an InputStream corresponding to the given file name.
- getInputStream(String) - Method in class loci.formats.services.POIServiceImpl
-
- getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Returns a shared instance of a BaselineTIFFTagSet
.
- getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
Returns a shared instance of an EXIFGPSTagSet
.
- getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
-
Returns the shared instance of
EXIFInteroperabilityTagSet
.
- getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet
-
Returns a shared instance of an EXIFParentTIFFTagSet
.
- getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
Returns a shared instance of an EXIFTIFFTagSet
.
- getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
Returns a shared instance of a FaxTIFFTagSet
.
- getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
Returns a shared instance of a GeoTIFFTagSet
.
- getInstance() - Static method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
-
- getInstance() - Static method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
-
- getInstance() - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
-
- getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
-
- getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
-
- getInstance() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
- getInstance() - Static method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
- getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
-
- getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
-
- getInstance() - Static method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat
-
- getInstance(int) - Static method in class loci.formats.gui.TwoChannelColorSpace
-
- getInt(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream
-
Gets the integer type attribute.
- getInt(SPEReader.SpeHeaderEntry) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to retrieve data values for Integer entries into the SPE header table
- getInt(int) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to retrieve an Integer value from the SPE header
- getIntArray(Node, String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream
-
Gets the integer type attribute.
- getIntArray(SPEReader.SpeHeaderEntry) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to retrieve data values for Integer Array entries into the SPE header table
- getIntArray() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getIntArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Gets the integer array from an IIOMetadataNode
.
- getIntAttribute(Node, String, int, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getIntAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getIntAttribute(Node, String, int, boolean, boolean, int, int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getIntAttribute(Node, String, boolean, int, int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getInteger(String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as an Integer.
- getInteger(String, Integer) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as an Integer.
- getIntegerValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getIntElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Gets its integer value from an IIOMetadataNode
.
- getIntellectualProperty() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
Returns the IntellectualProperty
flag.
- getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Returns the specified code-block in the current tile for the specified
component (as a reference or copy).
- getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec
-
Returns the specified code-block in the current tile for the specified
component (as a reference or copy).
- getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer
-
Returns the specified code-block in the current tile for the specified
component (as a reference or copy).
- getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler
-
Returns the specified code-block in the current tile for the specified
component (as a reference or copy).
- getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec
-
Returns the specified code-block in the current tile for the specified
component (as a reference or copy).
- getInternCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns, in the blk argument, the block of image data containing the
specifed rectangular area, in the specified component.
- getInternCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component.
- getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Apply the component transformation associated with the current tile.
- getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component, using the
'transfer type' defined in the block given as argument.
- getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component.
- getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Returns, in the blk argument, the block of image data containing the
specifed rectangular area, in the specified component.
- getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Apply the inverse component transformation associated with the current
tile.
- getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler
-
Returns, in the blk argument, a block of image data containing the
specifed rectangular area, in the specified component.
- getInternCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Returns a block of image data containing the specifed rectangular area,
in the specified component, as a reference to the internal buffer (see
below).
- getInterpolate() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getInterpolatedPixel(double, double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getInts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of signed integers, one per channel.
- getInts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of signed integers, one per channel.
- getInts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of signed integers, one per channel.
- getIntValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock
-
- getJDKImageReaderWriterSPI(ServiceRegistry, String, boolean) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
- getJPEGBuf() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Returns the JPEG image buffer associated with this decompressor instance.
- getJPEGSize() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Returns the size of the JPEG image (in bytes) associated with this
decompressor instance.
- getJPEGTablesReader() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor
-
Retrieves a JPEG reader which supports native JPEG stream metadata.
- getKerSpecType(int) - Method in class jj2000.j2k.wavelet.WTFilterSpec
-
Returns the type of specification for the filters in the specified
component and tile.
- getKey() - Method in class loci.formats.in.BaseZeissReader.Tag
-
- getKey(int) - Method in class loci.formats.in.BaseZeissReader.Tag
-
Return the string corresponding to the given ID.
- getKey(int) - Method in class loci.formats.in.MetamorphReader
-
- getKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation
-
- getKey() - Method in class loci.plugins.prefs.Option
-
Gets the option's key name.
- getKeyID() - Method in class loci.formats.in.BaseZeissReader.Tag
-
- getLabel() - Method in class loci.plugins.prefs.Option
-
Gets label describing the option.
- getLabel(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the label for the option with the given key.
- getLabels() - Method in class loci.plugins.config.FlexWidgets
-
- getLabels() - Method in interface loci.plugins.config.IFormatWidgets
-
- getLabels() - Method in class loci.plugins.config.LIFWidgets
-
- getLabels() - Method in class loci.plugins.config.ND2Widgets
-
- getLabels() - Method in class loci.plugins.config.PictWidgets
-
- getLabels() - Method in class loci.plugins.config.QTWidgets
-
- getLabels() - Method in class loci.plugins.config.SDTWidgets
-
- getLabels() - Method in class loci.plugins.config.TiffDelegateWidgets
-
- getLabels() - Method in class loci.plugins.config.ZeissCZIWidgets
-
- getLaserMedium(String) - Method in class loci.formats.FormatReader
-
Retrieves an LaserMedium
enumeration
value for the given String.
- getLaserPower() - Method in class loci.formats.in.PrairieMetadata
-
Gets the first laserPower
recorded in the configuration.
- getLaserType(String) - Method in class loci.formats.FormatReader
-
Retrieves an LaserType
enumeration
value for the given String.
- getLast() - Method in class loci.formats.FilePattern
-
Gets the STOP element for all blocks.
- getLast() - Method in class loci.formats.FilePatternBlock
-
Gets the last element in a range block.
- getLastBodyBuf() - Method in class jj2000.j2k.codestream.writer.PktEncoder
-
Returns the buffer of the body of the last encoded packet.
- getLastBodyLen() - Method in class jj2000.j2k.codestream.writer.PktEncoder
-
Returns the length of the body of the last encoded packet, in
bytes.
- getLastChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- getLastPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- getLatestVersion() - Method in interface loci.formats.services.OMEXMLService
-
Retrieves the latest supported version of the OME-XML schema.
- getLatestVersion() - Method in class loci.formats.services.OMEXMLServiceImpl
-
- getLayers() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets layers
- getLeafChildCount() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- getLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Returns the box length.
- getLength() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- getLength() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
Returns the current length of the buffer, in bytes.
- getLength() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Returns the current length of the entire bit stream.
- getLength() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Returns the current length of the entire bit stream.
- getLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Returns the length of the header.
- getLength(RandomAccessInputStream, int) - Method in class loci.formats.in.DicomReader
-
- getLength(long) - Method in class loci.formats.in.OBFReader
-
- getLengths() - Method in class loci.formats.cache.CacheStrategy
-
- getLengths() - Method in interface loci.formats.cache.ICacheStrategy
-
Gets the lengths of all the axes.
- getLengths(IFormatReader) - Static method in class loci.formats.tools.CacheConsole
-
Helper utility for constructing lengths array, used by main.
- getLensNA() - Method in class loci.formats.in.MetamorphHandler
-
- getLensRI() - Method in class loci.formats.in.MetamorphHandler
-
- getLetter() - Method in class loci.formats.ResourceNamer
-
Returns a String
representing a single letter (in the case
where the class instance has been initialized with a resource count lower
than 26) or a concatenation of two letters (if resource count is higher
than 26).
- getLevels(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec
-
Returns the decomposition number of levels in component 'n' and tile
't'.
- getLH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Returns the LH (vertical high-pass) child subband of this
subband.
- getLH() - Method in class jj2000.j2k.wavelet.Subband
-
Returns the LH (vertical high-pass) child subband of this subband.
- getLH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
Returns the LH (vertical high-pass) child subband of this
subband.
- getLicenseCode() - Method in interface loci.formats.services.LuraWaveService
-
Retrieves the current license code as a string.
- getLicenseCode() - Method in class loci.formats.services.LuraWaveServiceImpl
-
- getLimitedSIndexFromSlope(float) - Static method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Returns the index of a slope for the summary table, limiting to the
admissible values.
- getLine(double, double, double, double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getLinesPerFrame() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the lines per frame for this Frame
.
- getLineWidth() - Method in class jj2000.j2k.util.MsgPrinter
-
Returns the line width that is used for formatting.
- getLL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Returns the LL child subband of this subband.
- getLL() - Method in class jj2000.j2k.wavelet.Subband
-
Returns the LL child subband of this subband.
- getLL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
Returns the LL child subband of this subband.
- getLoadList(int[]) - Method in class loci.formats.cache.CacheStrategy
-
- getLoadList(int[]) - Method in interface loci.formats.cache.ICacheStrategy
-
Gets the indices of the objects to cache,
surrounding the object at the given position.
- getLocation() - Method in class loci.plugins.in.ImporterOptions
-
- getLocationFromResourceName(Location, String, int, String) - Method in class loci.formats.ResourceNamer
-
Creates a new Location
instance using the provided parent path and
child node name.
- getLocationInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getLocations() - Method in class loci.plugins.in.ImporterOptions
-
- getLong(String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a Long.
- getLong(String, Long) - Method in class loci.formats.in.DynamicMetadataOptions
-
Get the value of property name
as a Long.
- getLong(SPEReader.SpeHeaderEntry) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to retrieve data values for Long enteries into the SPE header table
- getLong(int) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to retrieve a Long value from the SPE header
- getLongArray(SPEReader.SpeHeaderEntry) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to retrieve data values for Long Array entries into the SPE header table
- getLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools
-
Convers an Index16ColorModel to a 2D short array.
- getLookupTable(Map) - Method in class loci.formats.in.AmiraReader
-
- getLookupTable() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the color lookup table stored in the file, or null if a lookup
table is not present.
- getLookupTableComponentCount() - Method in class loci.formats.ChannelFiller
-
Gets the number of color components in the lookup table.
- getLossless() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets lossless
.
- getLossless() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets encodingRate
- getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Returns the time-reversed low-pass synthesis waveform of the
filter, which is the low-pass filter.
- getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the time-reversed low-pass synthesis waveform of the
filter, which is the low-pass filter.
- getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the time-reversed low-pass synthesis waveform of the filter,
which is the low-pass filter.
- getLPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Returns the equivalent low-pass synthesis waveform of a cascade
of filters, given the syhthesis waveform of the previous
stage.
- getLSMFileFromSeries(int) - Method in class loci.formats.in.ZeissLSMReader
-
- getLUT(IndexColorModel) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Gets the LUT from the IndexColorModel
as an two-dimensional
byte array.
- getLUT() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Return the LUT.
- getLutNames() - Method in class loci.formats.in.LeicaHandler
-
- getLutUpdateMode() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getMagnification(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getMagnification() - Method in class loci.formats.in.ND2Handler
-
- getMagnification() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Extracts the magnification from the objective lens string.
- getMagnification() - Method in class loci.formats.in.SVSReader
-
- getMagnitudes() - Method in class loci.formats.in.IM3Reader.Spectrum
-
- getMainDefDecompType() - Method in class jj2000.j2k.wavelet.WTDecompSpec
-
Returns the main default decomposition type.
- getMainDefLevels() - Method in class jj2000.j2k.wavelet.WTDecompSpec
-
Returns the main default decomposition number of levels.
- getMap() - Method in class loci.formats.tools.AmiraParameters
-
- getMappedBuffer(int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
Returns a MappedByteBuffer
which memory maps
at least from the channel position corresponding to the
current stream position to len
bytes beyond.
- getMarker(String) - Method in class loci.formats.FormatReader
-
Retrieves an Marker
enumeration
value for the given String.
- getMask() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getMaskArray() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getMax() - Method in class jj2000.j2k.IntegerSpec
-
Get the maximum value of each tile-component
- getMax() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Returns the number of bytes remaining available in the bit stream.
- getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Returns the number of bytes remaining available in the bit stream.
- getMaxBitDepth() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getMaxCBlkHeight() - Method in class jj2000.j2k.entropy.CBlkSizeSpec
-
Returns the maximum code-block's height
- getMaxCBlkWidth() - Method in class jj2000.j2k.entropy.CBlkSizeSpec
-
Returns the maximum code-block's width
- getMaxCompHeight() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- getMaxCompImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Return the maximum height among all components
- getMaxCompImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Return the maximum width among all components
- getMaxCompWidth() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- getMaxFieldCount(Integer) - Static method in class loci.formats.FormatTools
-
- getMaximumSize() - Method in class loci.formats.gui.CacheIndicator
-
- getMaximumSize() - Method in class loci.formats.gui.DataConverter.RowPanel
-
- getMaxInComp(int) - Method in class jj2000.j2k.IntegerSpec
-
Get the maximum value of each tile for specified component
- getMaxInTile(int) - Method in class jj2000.j2k.IntegerSpec
-
Get the maximum value of each component in specified tile
- getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Returns the maximum number of magnitude bits in any subband in the
current tile.
- getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns the maximum number of magnitude bits in any subband of the
current tile.
- getMaxMagBitsDerived(Subband, int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns the maximum number of magnitude bits in any subband in the
given tile-component if derived quantization is used
- getMaxMagBitsExpounded(Subband, int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns the maximum number of magnitude bits in any subband in the
given tile-component if expounded quantization is used
- getMaxMagBitsRev(Subband, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns the maximum number of magnitude bits in any subband of the
current tile if reversible quantization is used
- getMaxThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getMaxTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the horizontal index of the rightmost column of tiles.
- getMaxTileX() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getMaxTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the vertical index of the bottom row of tiles.
- getMaxTileY() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getMaxValue() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- getMaxValue() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getMaxX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the X coordinate of the column immediatetely to the
right of the rightmost column of the image.
- getMaxY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the Y coordinate of the row immediately below the
bottom row of the image.
- getMCUHeight(int) - Static method in class org.libjpegturbo.turbojpeg.TJ
-
Returns the MCU block height for the given level of chrominance
subsampling.
- getMCUWidth(int) - Static method in class org.libjpegturbo.turbojpeg.TJ
-
Returns the MCU block width for the given level of chrominance
subsampling.
- getMDBFile(String) - Method in class loci.formats.in.ZeissLSMReader
-
- getMeasurementID() - Method in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- getMeasurementName() - Method in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- getMeasurementTime() - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- getMedium(String) - Method in class loci.formats.FormatReader
-
Retrieves an Medium
enumeration
value for the given String.
- getMember(String) - Method in interface loci.formats.services.JHDFService
-
Retrieves the all members of a group.
- getMember(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- getMemoFile(String) - Method in class loci.formats.Memoizer
-
Constructs a
File
object from
id
string.
- getMemoryUsage() - Method in class loci.plugins.in.ImportProcess
-
Gets a projection of required memory in bytes.
- getMessage() - Method in enum loci.plugins.in.ImportStep
-
- getMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Returns the current IIOMetadata
object.
- getMetadata() - Method in class loci.formats.in.ND2Handler
-
- getMetadataLevel() - Method in class loci.formats.in.DefaultMetadataOptions
-
- getMetadataLevel() - Method in class loci.formats.in.DynamicMetadataOptions
-
- getMetadataLevel() - Method in interface loci.formats.in.MetadataOptions
-
Get the configured metadata level.
- getMetadataOptions() - Method in class loci.formats.DelegateReader
-
- getMetadataOptions() - Method in class loci.formats.FormatHandler
-
- getMetadataOptions() - Method in class loci.formats.ImageReader
-
- getMetadataOptions() - Method in class loci.formats.ImageWriter
-
- getMetadataOptions() - Method in interface loci.formats.IMetadataConfigurable
-
- getMetadataOptions() - Method in class loci.formats.ReaderWrapper
-
- getMetadataOptions() - Method in class loci.formats.WriterWrapper
-
- getMetadataRetrieve() - Method in class loci.formats.FormatWriter
-
- getMetadataRetrieve() - Method in interface loci.formats.IFormatWriter
-
Retrieves the current metadata retrieval object for this writer.
- getMetadataRetrieve() - Method in class loci.formats.ImageWriter
-
- getMetadataRetrieve() - Method in class loci.formats.WriterWrapper
-
- getMetadataRoot(String) - Method in class loci.formats.in.LIFReader
-
- getMetadataStore() - Method in class loci.formats.FileStitcher
-
- getMetadataStore() - Method in class loci.formats.FormatReader
-
- getMetadataStore() - Method in interface loci.formats.IFormatReader
-
Retrieves the current metadata store for this reader.
- getMetadataStore() - Method in class loci.formats.ImageReader
-
- getMetadataStore() - Method in class loci.formats.in.FilePatternReader
-
- getMetadataStore() - Method in class loci.formats.Memoizer
-
- getMetadataStore() - Method in class loci.formats.ReaderWrapper
-
- getMetadataStoreForConversion() - Method in class loci.formats.in.OMETiffReader
-
- getMetadataStoreForDisplay() - Method in class loci.formats.in.OMETiffReader
-
- getMetadataStoreRoot() - Method in class loci.formats.FileStitcher
-
- getMetadataStoreRoot() - Method in class loci.formats.FormatReader
-
- getMetadataStoreRoot() - Method in interface loci.formats.IFormatReader
-
Retrieves the current metadata store's root object.
- getMetadataStoreRoot() - Method in class loci.formats.ImageReader
-
- getMetadataStoreRoot() - Method in class loci.formats.in.FilePatternReader
-
- getMetadataStoreRoot() - Method in class loci.formats.ReaderWrapper
-
- getMetadataString(String) - Method in class loci.plugins.in.ImporterMetadata
-
Returns a string with each key/value pair on its own line.
- getMetadataType() - Method in enum loci.formats.tiff.PhotoInterp
-
Retrieves the metadata type of the photometric interpretation.
- getMetadataValue(String) - Method in class loci.formats.FormatReader
-
- getMetadataValue(String) - Method in interface loci.formats.IFormatReader
-
Obtains the specified metadata field's value for the current file.
- getMetadataValue(String) - Method in class loci.formats.ImageReader
-
- getMetadataValue(String) - Method in class loci.formats.in.FilePatternReader
-
- getMetadataValue(String) - Method in class loci.formats.ReaderWrapper
-
- getMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getMethod() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Returns the method to define the color space.
- getMethodForMQLengthCalc() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets methodForMQLengthCalc
- getMethodForMQTermination() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets methodForMQTermination
- getMethodStack() - Method in class loci.plugins.util.BFVirtualStack
-
- getMethodStack() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getMicrobeamManipulationType(String) - Method in class loci.formats.FormatReader
-
Retrieves an MicrobeamManipulationType
enumeration value for the given String.
- getMicronsPerPixelX() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the microns per pixel along X for this Frame
.
- getMicronsPerPixelY() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the microns per pixel along Y for this Frame
.
- getMicroscopeType(String) - Method in class loci.formats.FormatReader
-
Retrieves an MicroscopeType
enumeration
value for the given String.
- getMin() - Method in class jj2000.j2k.IntegerSpec
-
Get the minimum value of each tile-component
- getMin() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getMinimumSize() - Method in class loci.formats.gui.CacheIndicator
-
- getMinInComp(int) - Method in class jj2000.j2k.IntegerSpec
-
Get the minimum value of each tile for specified component
- getMinInTile(int) - Method in class jj2000.j2k.IntegerSpec
-
Get the minimum value of each component in specified tile
- getMinMaxCalculator() - Method in class loci.plugins.in.ImportProcess
-
- getMinMaxStore() - Method in class loci.formats.MinMaxCalculator
-
Retrieves the current active min-max store for the calculator.
- getMinorVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
Returns the minor version of this file type box.
- getMinThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getMinTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the horizontal index of the leftmost column of tiles.
- getMinTileX() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getMinTileX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getMinTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the vertical index of the uppermost row of tiles.
- getMinTileY() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getMinTileY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getMinX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the X coordinate of the leftmost column of the image.
- getMinX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets minX
- getMinX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getMinY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the X coordinate of the uppermost row of the image.
- getMinY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets minY
- getMinY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getModalities() - Method in class loci.formats.in.ND2Handler
-
- getModality(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getModuloAlong(OMEXMLMetadata, String, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
Create a
Modulo
corresponding to the given ModuloAlong* tag.
- getModuloAlongC(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService
-
Retrieve the ModuloAlongC annotation in the given Image in the given
OME-XML metadata object.
- getModuloAlongC(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- getModuloAlongT(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService
-
Retrieve the ModuloAlongT annotation in the given Image in the given
OME-XML metadata object.
- getModuloAlongT(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- getModuloAlongZ(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService
-
Retrieve the ModuloAlongZ annotation in the given Image in the given
OME-XML metadata object.
- getModuloAlongZ(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- getModuloC() - Method in class loci.formats.FormatReader
-
- getModuloC() - Method in interface loci.formats.IFormatReader
-
- getModuloC() - Method in class loci.formats.ImageReader
-
- getModuloC() - Method in class loci.formats.in.FilePatternReader
-
- getModuloC() - Method in class loci.formats.ReaderWrapper
-
- getModuloT() - Method in class loci.formats.FormatReader
-
- getModuloT() - Method in interface loci.formats.IFormatReader
-
- getModuloT() - Method in class loci.formats.ImageReader
-
- getModuloT() - Method in class loci.formats.in.FilePatternReader
-
- getModuloT() - Method in class loci.formats.ReaderWrapper
-
- getModuloZ() - Method in class loci.formats.FormatReader
-
- getModuloZ() - Method in interface loci.formats.IFormatReader
-
- getModuloZ() - Method in class loci.formats.ImageReader
-
- getModuloZ() - Method in class loci.formats.in.FilePatternReader
-
- getModuloZ() - Method in class loci.formats.ReaderWrapper
-
- getMontage(int) - Method in class loci.formats.in.FluoviewReader
-
- getMsgLogger() - Static method in class jj2000.j2k.util.FacilityManager
-
Returns the MsgLogger registered with the current thread (the
thread that calls this method).
- getMsgLogger(Thread) - Static method in class jj2000.j2k.util.FacilityManager
-
Returns the MsgLogger registered with the thread 't' (the thread
that calls this method).
- getMustGroupInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getNA(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getName() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Returns the name of the tag, as it will appear in image metadata.
- getName(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Returns the XML tag name defined in JP2 XML xsd/dtd for the box
with the provided type
.
- getName() - Method in enum loci.formats.codec.JPEG2000BoxType
-
Returns the name of the box type.
- getName() - Method in enum loci.formats.codec.JPEG2000SegmentMarker
-
Returns the name of the segment marker.
- getName(int) - Method in class loci.formats.gui.TwoChannelColorSpace
-
- getName() - Method in enum loci.formats.in.BaseZeissReader.Charset
-
- getName() - Method in class loci.formats.in.IM3Reader.Spectrum
-
- getName(String) - Method in class loci.formats.services.NetCDFServiceImpl
-
- getName() - Method in enum loci.formats.tiff.PhotoInterp
-
Retrieves the given name of the photometric interpretation.
- getNamingConvention(String) - Method in class loci.formats.FormatReader
-
Retrieves an NamingConvention
enumeration
value for the given String.
- getNativeDataType() - Method in class loci.formats.ChannelFiller
-
- getNativeDataType() - Method in class loci.formats.ChannelMerger
-
- getNativeDataType() - Method in class loci.formats.ChannelSeparator
-
- getNativeDataType() - Method in class loci.formats.FormatHandler
-
- getNativeDataType() - Method in interface loci.formats.IFormatHandler
-
- getNativeDataType() - Method in class loci.formats.ImageReader
-
- getNativeDataType() - Method in class loci.formats.ImageWriter
-
- getNativeDataType() - Method in class loci.formats.in.BIFormatReader
-
- getNativeDataType() - Method in class loci.formats.in.FilePatternReader
-
- getNativeDataType() - Method in class loci.formats.in.TextReader
-
- getNativeDataType() - Method in class loci.formats.MinMaxCalculator
-
- getNativeDataType() - Method in class loci.formats.out.ImageIOWriter
-
- getNativeDataType() - Method in class loci.formats.out.LegacyQTWriter
-
- getNativeDataType() - Method in class loci.formats.ReaderWrapper
-
- getNativeDataType() - Method in class loci.formats.TileStitcher
-
- getNativeDataType() - Method in class loci.formats.WriterWrapper
-
- getNativeDataType() - Method in class loci.plugins.util.ImageProcessorReader
-
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Creates an IIOMetadataNode
from this
box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Creates an IIOMetadataNode
from this channel definition
box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Creates an IIOMetadataNode
from this color specification
box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
Creates an IIOMetadataNode
from this component mapping
box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
Creates an IIOMetadataNode
from this data entry URL
box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
Creates an IIOMetadataNode
from this file type box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
Creates an IIOMetadataNode
from this image header box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
creates an IIOMetadataNode
from this palette box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
Creates an IIOMetadataNode
from this resolution
box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox
-
Creates an IIOMetadataNode
from this signature
box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
Creates an IIOMetadataNode
from this UUID
box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
-
Creates an IIOMetadataNode
from this UUID list
box.
- getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox
-
Creates an IIOMetadataNode
from this XML
box.
- getNativeNodeForSimpleBox() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Creates an IIOMetadataNode
from this
box.
- getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getNativeTree() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- getNChannels() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getNewCOC() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of COC
- getNewCOD() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of COD
- getNewCOM() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of COM
- getNewCRG() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of CRG
- getNewPOC() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of POC
- getNewQCC() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of QCC
- getNewQCD() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of QCD
- getNewRGN() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of RGN
- getNewSIZ() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of SIZ
- getNewSOT() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns a new instance of SOT
- getNextChangingElement(int, boolean, int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- getNextCodeBlock(int, CBlkRateDistStats) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc
-
Returns the next coded code-block in the current tile for the specified
component, as a copy (see below).
- getNextCodeBlock(int, CBlkRateDistStats) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Returns the next coded code-block in the current tile for the specified
component, as a copy (see below).
- getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc
-
Returns the next code-block in the current tile for the specified
component, as a copy (see below).
- getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns the next code-block in the current tile for the specified
component, as a copy (see below).
- getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
This function gets a datablk from the entropy coder.
- getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc
-
Returns the next code-block in the current tile for the specified
component, as a copy (see below).
- getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the next code-block in the current tile for the specified
component, as a copy (see below).
- getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc
-
Returns the next code-block in the current tile for the specified
component.
- getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns the next code-block in the current tile for the specified
component.
- getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
This function gets a datablk from the entropy coder.
- getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc
-
Returns the next code-block in the current tile for the specified
component.
- getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the next code-block in the current tile for the specified
component.
- getNextLine(List<String>) - Method in class loci.formats.in.TextReader
-
- getNextOffset(long) - Method in class loci.formats.tiff.TiffParser
-
Read a file offset.
- getNextResLevel() - Method in class jj2000.j2k.wavelet.Subband
-
Returns the first leaf subband element in the next higher resolution
level.
- getNextSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- getNextSubband(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the next subband that will be used to get the next code-block
to return by the getNext[Intern]CodeBlock method.
- getNextTag(RandomAccessInputStream) - Method in class loci.formats.in.DicomReader
-
- getNextTag(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader
-
- getNodeFromTree(IIOMetadataNode, String, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getNodeName(TIFFField) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- getNodes(Element, String) - Method in class loci.formats.in.LIFReader
-
- getNomRangeBits(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the number of bits corresponding to the nominal range of the
data in the specified component.
- getNomRangeBits(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Returns the number of bits, referred to as the "range bits",
corresponding to the nominal range of the data in the specified
component and in the current tile.
- getNomRangeBits(int) - Method in interface jj2000.j2k.image.ImgData
-
Returns the number of bits, referred to as the "range bits",
corresponding to the nominal range of the image data in the specified
component.
- getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the number of bits, referred to as the "range bits",
corresponding to the nominal range of the image data in the specified
component.
- getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the number of bits, referred to as the "range bits",
corresponding to the nominal range of the data in the specified
component.
- getNomRangeBits(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Returns the number of bits corresponding to the nominal range of the
data in the specified component.
- getNomRangeBits(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Returns the number of bits, referred to as the "range bits",
corresponding to the nominal range of the data in the specified
component.
- getNomRangeBits(int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
Returns the number of bits, referred to as the "range bits",
corresponding to the nominal range of the data in the specified
component.
- getNomRangeBits(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec
-
Returns the number of bits, referred to as the "range bits",
corresponding to the nominal range of the data in the specified
component.
- getNomRangeBits(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Returns the number of bits, referred to as the "range bits",
corresponding to the nominal range of the data in the specified
component.
- getNomTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the nominal tile height
- getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the nominal width of the tiles in the reference grid.
- getNomTileHeight() - Method in interface jj2000.j2k.image.ImgData
-
Returns the nominal tiles height
- getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the nominal tiles height
- getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the nominal tiles height
- getNomTileHeight() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the nominal tiles height
- getNomTileHeight() - Method in class jj2000.j2k.image.Tiler
-
Returns the nominal width of the tiles in the reference grid.
- getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the nominal height of tiles
- getNomTileHeight() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the nominal tiles height
- getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the nominal tiles height
- getNomTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the nominal tile width
- getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the nominal width of the tiles in the reference grid.
- getNomTileWidth() - Method in interface jj2000.j2k.image.ImgData
-
Returns the nominal tiles width
- getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the nominal tiles width
- getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the nominal tiles width
- getNomTileWidth() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the nominal tiles width
- getNomTileWidth() - Method in class jj2000.j2k.image.Tiler
-
Returns the nominal width of the tiles in the reference grid.
- getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the nominal width of tiles
- getNomTileWidth() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the nominal tiles width
- getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the nominal tiles width
- getNonThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser
-
Returns non-thumbnail IFDs.
- getNOptPoints() - Method in class jj2000.j2k.entropy.encoder.LayersInfo
-
Returns the number of layers to optimize, or optimization points, as
specified by this object.
- getNoROIDescaling() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
-
Gets noROIDescaling
- getNoWlzMsg() - Method in interface loci.formats.services.WlzService
-
Gets the text string for when Woolz has not been found.
- getNoWlzMsg() - Method in class loci.formats.services.WlzServiceImpl
-
- getNum() - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor
-
Returns numerator
- getNumBands() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Returns the integer used to represent the tag.
- getNumber(String) - Method in class loci.formats.NumberFilter
-
Gets numbers filling the asterisk positions.
- getNumBits(int) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
The number of bits represented by the value which should be a
legal length for a color table.
- getNumBits(int) - Static method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- getNumBytes(int) - Method in class loci.formats.in.GatanReader
-
- getNumCodedBytes() - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
Returns the number of bytes that are necessary from the compressed
output stream to decode all the symbols that have been coded this
far.
- getNumCOM() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns the number of found COM marker segments
- getNumComp() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Return the number of color components.
- getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
Returns the number of image components.
- getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets the number of components
- getNumComponents() - Method in class loci.formats.gui.TwoChannelColorSpace
-
- getNumComps() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the number of components in the image.
- getNumComps() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the number of components in the image.
- getNumComps() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the number of components in the image.
- getNumComps() - Method in interface jj2000.j2k.image.ImgData
-
Returns the number of components in the image.
- getNumComps() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the number of components in the image.
- getNumComps() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the number of components in the image.
- getNumComps() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the number of components in the image.
- getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the number of components in the image.
- getNumComps() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the number of components in the image.
- getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the number of components in the image.
- getNumCtxts() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
Returns the number of contexts in the arithmetic coder.
- getNumCtxts() - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
Returns the number of contexts in the arithmetic coder.
- getNumDecompositionLevels() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets numDecompositionLevels
.
- getNumEntries() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Return the number of palette entries.
- getNumEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.BooleanIM3Record
-
Get the # of boolean values in this record
- getNumEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.FloatIM3Record
-
Get the # of floating-point values in this record
- getNumEntries(IRandomAccess) - Method in class loci.formats.in.IM3Reader.IntIM3Record
-
Get the # of integer values in this record
- getNumerator() - Method in class loci.formats.tiff.TiffRational
-
Gets this number's numerator.
- getNumericalAperture() - Method in class loci.formats.in.ND2Handler
-
- getNumericFields(GenericDialog) - Method in class loci.plugins.in.ColorDialog
-
- getNumericFields(GenericDialog) - Static method in class loci.plugins.util.WindowTools
-
- getNumFoundMarkSeg() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the number of found marker segments in the current header.
- getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC
-
- getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD
-
- getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Returns the number of guard bits used by this quantizer in the
given tile-component.
- getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns the number of guard bits used by this quantizer in the given
tile-component.
- getNumImages() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
Retrieves the number of images in the ImageInputStream
.
- getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
Overrides the method defined in the superclass.
- getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Overrides the method defined in the superclass.
- getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
Overrides the method defined in the superclass.
- getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
Overrides the method defined in the superclass.
- getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
Overrides the method defined in the superclass.
- getNumLayers() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
Returns the number of layers that are actually generated.
- getNumPrecinct(int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder
-
Gets the number of precincts in a given component and resolution level.
- getNumSeries() - Method in class loci.formats.in.LegacyND2Reader
-
- getNumThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getNumTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Returns the number of
TIFFField
s in this directory.
- getNumTileParts(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Returns the number of tile-part found for a given tile
- getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets the number of tiles
- getNumTiles(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the number of tiles in the horizontal and vertical
directions.
- getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the total number of tiles in the image.
- getNumTiles() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- getNumTiles(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the number of tiles in the horizontal and vertical directions.
- getNumTiles() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the total number of tiles in the image.
- getNumTiles() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Return the number of tiles in the image
- getNumTiles(Point) - Method in interface jj2000.j2k.image.ImgData
-
Returns the number of tiles in the horizontal and vertical directions.
- getNumTiles() - Method in interface jj2000.j2k.image.ImgData
-
Returns the total number of tiles in the image.
- getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the number of tiles in the horizontal and vertical directions.
- getNumTiles() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the total number of tiles in the image.
- getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the number of tiles in the horizontal and vertical
directions.
- getNumTiles() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the total number of tiles in the image.
- getNumTiles(Point) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the number of tiles in the horizontal and vertical
directions.
- getNumTiles() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the total number of tiles in the image.
- getNumTiles(Point) - Method in class jj2000.j2k.image.Tiler
-
Returns the number of tiles in the horizontal and vertical directions.
- getNumTiles() - Method in class jj2000.j2k.image.Tiler
-
Returns the total number of tiles in the image.
- getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the number of tiles in the horizontal and vertical directions.
- getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the total number of tiles in the image.
- getNumTiles(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the number of tiles in the horizontal and vertical directions.
- getNumTiles() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the total number of tiles in the image.
- getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the number of tiles in the horizontal and vertical directions.
- getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the total number of tiles in the image.
- getNumXTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the number of tiles along the tile grid in the
horizontal direction.
- getNumXTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getNumXTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getNumYTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the number of tiles along the tile grid in the vertical
direction.
- getNumYTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getNumYTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getObject(int) - Method in class loci.formats.cache.ByteArraySource
-
- getObject(int[]) - Method in class loci.formats.cache.Cache
-
Gets the cached object at the given dimensional position.
- getObject(int) - Method in class loci.formats.cache.CacheSource
-
- getObject(int) - Method in interface loci.formats.cache.ICacheSource
-
Get the object corresponding to the given index.
- getObject(int) - Method in class loci.formats.gui.BufferedImageSource
-
- getObject(int) - Method in class loci.plugins.util.ImageProcessorSource
-
- getObjectArrayMaxLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getObjectArrayMinLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getObjectClass(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getObjectCount() - Method in class loci.formats.cache.CacheSource
-
- getObjectCount() - Method in interface loci.formats.cache.ICacheSource
-
Get the total number of objects that this source can retrieve.
- getObjectCount() - Method in class loci.formats.gui.BufferedImageSource
-
- getObjectCount() - Method in class loci.plugins.util.ImageProcessorSource
-
- getObjectDefaultValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getObjectEnumerations(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getObjectiveLens() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the objective lens string for this Frame
.
- getObjectiveLensNA() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the numerical aperture of the lens for this Frame
.
- getObjectiveManufacturer() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Extracts the objective manufacturer from the objective lens string.
- getObjectiveModel() - Method in class loci.formats.in.ND2Handler
-
- getObjectiveName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getObjectMaxValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getObjectMinValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getObjectValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getObjectValueType(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Gives the offset of the end of last packet containing ROI information
- getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Gives the offset of the end of last packet containing ROI information
- getOffset(int) - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the c
th offset for this Frame
.
- getOMEMetadata(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService
-
Returns a
OMEXMLMetadata
object with the same
contents as the given MetadataRetrieve, converting it if necessary.
- getOMEMetadata(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- getOMEMetadata() - Method in class loci.plugins.in.ImportProcess
-
- getOMEXML(String) - Method in class loci.formats.out.OMETiffWriter
-
- getOMEXML(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService
-
Extracts an OME-XML metadata string from the given metadata object,
by converting to an OME-XML metadata object if necessary.
- getOMEXML(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- getOMEXML() - Method in class loci.plugins.in.ImportProcess
-
- getOmeXmlMetadata() - Method in class loci.formats.in.FakeReader
-
- getOmeXmlService() - Method in class loci.formats.in.FakeReader
-
- getOMEXMLVersion(Object) - Method in interface loci.formats.services.OMEXMLService
-
Gets the schema version for the given OME-XML metadata or root object
(e.g., "2007-06" or "2003-FC").
- getOMEXMLVersion(Object) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- getOnDemandStripOffsets() - Method in class loci.formats.tiff.IFD
-
- getOpenAllSeriesInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getOpticalZoom() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the optical zoom associated with this Frame
.
- getOptimalTileHeight() - Method in class loci.formats.DelegateReader
-
- getOptimalTileHeight() - Method in class loci.formats.FormatReader
-
- getOptimalTileHeight() - Method in interface loci.formats.IFormatReader
-
Returns the optimal sub-image height for use with openBytes.
- getOptimalTileHeight() - Method in class loci.formats.ImageReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.AFIReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.AmiraReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.APLReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.BaseZeissReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.BDReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.BioRadReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.CellH5Reader
-
- getOptimalTileHeight() - Method in class loci.formats.in.CellSensReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.EPSReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.FilePatternReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.FlexReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.FV1000Reader
-
- getOptimalTileHeight() - Method in class loci.formats.in.HamamatsuVMSReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.ImageIOReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.ImarisHDFReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.InCellReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.IPWReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.L2DReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.LeicaReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.LeicaSCNReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.LIFReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.MIASReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.MicromanagerReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.MinimalTiffReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.ND2Reader
-
- getOptimalTileHeight() - Method in class loci.formats.in.NDPIReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.NDPISReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.NRRDReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.OMETiffReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.OpenlabReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.PCIReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.PerkinElmerReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.PrairieReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.PyramidTiffReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.ScanrReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.SVSReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.TrestleReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.VisitechReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.ZeissCZIReader
-
- getOptimalTileHeight() - Method in class loci.formats.in.ZeissLSMReader
-
- getOptimalTileHeight() - Method in class loci.formats.ReaderWrapper
-
- getOptimalTileWidth() - Method in class loci.formats.DelegateReader
-
- getOptimalTileWidth() - Method in class loci.formats.FormatReader
-
- getOptimalTileWidth() - Method in interface loci.formats.IFormatReader
-
Returns the optimal sub-image width for use with openBytes.
- getOptimalTileWidth() - Method in class loci.formats.ImageReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.AFIReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.APLReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.BDReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.CellSensReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.EPSReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.FilePatternReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.FlexReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.FV1000Reader
-
- getOptimalTileWidth() - Method in class loci.formats.in.HamamatsuVMSReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.ImarisHDFReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.InCellReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.IPWReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.L2DReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.LeicaReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.LeicaSCNReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.MIASReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.MicromanagerReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.MinimalTiffReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.NDPIReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.NDPISReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.OMETiffReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.PCIReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.PerkinElmerReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.PrairieReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.PyramidTiffReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.ScanrReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.SVSReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.TrestleReader
-
- getOptimalTileWidth() - Method in class loci.formats.in.ZeissCZIReader
-
- getOptimalTileWidth() - Method in class loci.formats.ReaderWrapper
-
- getOptimalWidth() - Method in class loci.formats.in.ZeissLSMReader
-
- getOption(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the option with the given key.
- getOptions() - Method in class loci.formats.ClassList
-
Gets the list of options as a map.
- getOptions() - Method in class loci.plugins.in.ImportProcess
-
- getOrder() - Method in class loci.formats.cache.CacheStrategy
-
- getOrder() - Method in interface loci.formats.cache.ICacheStrategy
-
Retrieves the order in which objects should be loaded along each axis.
- getOrgX() - Method in interface loci.formats.services.WlzService
-
Gets column origin.
- getOrgX() - Method in class loci.formats.services.WlzServiceImpl
-
- getOrgY() - Method in interface loci.formats.services.WlzService
-
Gets line origin.
- getOrgY() - Method in class loci.formats.services.WlzServiceImpl
-
- getOrgZ() - Method in interface loci.formats.services.WlzService
-
Gets plane origin.
- getOrgZ() - Method in class loci.formats.services.WlzServiceImpl
-
- getOrigBitDepth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- getOriginalBitDepth(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the original bitdepth of the specified component.
- getOriginalIndex(int) - Method in class loci.formats.ChannelMerger
-
Returns the image number in the original dataset that corresponds to the
given image number.
- getOriginalIndex(int) - Method in class loci.formats.ChannelSeparator
-
Returns the image number in the original dataset that corresponds to the
given image number.
- getOriginalMetadata(OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService
-
Parse any OriginalMetadata annotations from the given OME-XML metadata
object and store them in a Hashtable.
- getOriginalMetadata(OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- getOriginalMetadata() - Method in class loci.plugins.in.ImportProcess
-
- getOriginalOrder() - Method in class loci.formats.AxisGuesser
-
Gets the original dimension order.
- getOriginalOrder() - Method in class loci.formats.FileStitcher.ExternalSeries
-
- getPackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
For the case of binary data (isBinary()
returns
true
), return the binary data as a packed byte array.
- getPackedPktHead(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Return the packed packet headers for a given tile.
- getPacketPerTilePart() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets packetPerTilePart
- getPackPacketHeaderInMain() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets packPacketHeaderInMain
- getPackPacketHeaderInTile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets packPacketHeaderInTile
- getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the parameters that are used in this class and implementing
classes.
- getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the parameters that are used in this class.
- getParameterInfo() - Static method in class jj2000.j2k.codestream.writer.PktEncoder
-
Returns the parameters that are used in this class and implementing
classes.
- getParameterInfo() - Static method in class jj2000.j2k.entropy.decoder.EntropyDecoder
-
Returns the parameters that are used in this class and
implementing classes.
- getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder
-
Returns the parameters that are used in this class and
implementing classes.
- getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
Returns the parameters that are used in this class and implementing
classes.
- getParameterInfo() - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Returns the parameters that are used in this class and implementing
classes.
- getParameterInfo() - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Returns the parameters that are used in this class and implementing
classes.
- getParameterInfo() - Static method in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
Returns the parameters that are used in this class and
implementing classes.
- getParameterInfo() - Static method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Returns the parameters that are used in this class and implementing
classes.
- getParameterInfo() - Static method in class jj2000.j2k.roi.encoder.ROIScaler
-
Returns the parameters that are used in this class and
implementing classes.
- getParameterInfo() - Static method in class jj2000.j2k.roi.ROIDeScaler
-
Returns the parameters that are used in this class and implementing
classes.
- getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Returns the parameters that are used in this class and
implementing classes.
- getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT
-
Returns the parameters that are used in this class and implementing
classes.
- getParent(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
- getParent(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
- getParent() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Returns the parent of this subband.
- getParent() - Method in class jj2000.j2k.wavelet.Subband
-
Returns the parent of this subband.
- getParent() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
Returns the parent of this subband.
- getParent(int) - Method in class loci.formats.in.LeicaSCNReader
-
- getParentTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Returns the parent
TIFFTag
of this directory if one
has been defined or
null
otherwise.
- getParsingEnabled() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
-
Gets parsingEnabled
- getPath(PrairieMetadata.PFile) - Method in class loci.formats.in.PrairieReader
-
- getPath() - Method in class loci.plugins.util.BFVirtualStack
-
- getPattern() - Method in class loci.formats.FilePattern
-
Gets the file pattern string.
- getPhotometricInterpretation() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
Returns the current value that will be written to the
Photometricinterpretation
tag.
- getPhotometricInterpretation() - Method in class loci.formats.tiff.IFD
-
Retrieves the image's photometric interpretation (TIFF tag
PhotometricInterpretation) from this IFD.
- getPhysicalSize(Double, String) - Static method in class loci.formats.FormatTools
-
- getPhysicalSizes() - Method in class loci.formats.in.SVSReader
-
- getPhysicalSizeX(Double) - Static method in class loci.formats.FormatTools
-
Formats the input value for the physical size in X into a length in
microns
- getPhysicalSizeX(Double, String) - Static method in class loci.formats.FormatTools
-
Formats the input value for the physical size in X into a length of the
given unit.
- getPhysicalSizeX(Double, Unit<Length>) - Static method in class loci.formats.FormatTools
-
Formats the input value for the physical size in X into a length of the
given unit.
- getPhysicalSizeY(Double) - Static method in class loci.formats.FormatTools
-
Formats the input value for the physical size in Y into a length in
microns
- getPhysicalSizeY(Double, String) - Static method in class loci.formats.FormatTools
-
Formats the input value for the physical size in Y into a length of the
given unit.
- getPhysicalSizeY(Double, Unit<Length>) - Static method in class loci.formats.FormatTools
-
Formats the input value for the physical size in Y into a length of the
given unit.
- getPhysicalSizeZ(Double) - Static method in class loci.formats.FormatTools
-
Formats the input value for the physical size in Z into a length in
microns.
- getPhysicalSizeZ(Double, String) - Static method in class loci.formats.FormatTools
-
Formats the input value for the physical size in Z into a length of the
given unit.
- getPhysicalSizeZ(Double, Unit<Length>) - Static method in class loci.formats.FormatTools
-
Formats the input value for the physical size in Z into a length of the
given unit.
- getPictDimensions(byte[]) - Method in class loci.formats.gui.LegacyQTTools
-
Gets width and height for the given PICT bytes.
- getPinholeSize() - Method in class loci.formats.in.ND2Handler
-
- getPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getPixel(int, int, int[]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getPixelBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools
-
Return a 2D array of bytes representing the image.
- getPixelBytes(WritableRaster, boolean) - Static method in class loci.formats.gui.AWTImageTools
-
Return a 2D array of bytes representing the image.
- getPixelBytes(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Return a 2D array of bytes representing the image.
- getPixelBytes(WritableRaster, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Return a 2D array of bytes representing the image.
- getPixelCount() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getPixelInterpolated(double, double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getPixels(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Gets the image's pixel data as arrays of primitives, one per channel.
- getPixels(BufferedImage, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Gets the image's pixel data as arrays of primitives, one per channel.
- getPixels(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
-
Gets the raster's pixel data as arrays of primitives, one per channel.
- getPixels(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Gets the raster's pixel data as arrays of primitives, one per channel.
- getPixels() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getPixelsCopy() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getPixelSize(int) - Static method in class org.libjpegturbo.turbojpeg.TJ
-
Returns the pixel size (in bytes) of the given pixel format.
- getPixelSizeX() - Method in class loci.formats.in.MetamorphHandler
-
- getPixelSizeX() - Method in class loci.formats.in.ND2Handler
-
- getPixelSizeY() - Method in class loci.formats.in.MetamorphHandler
-
- getPixelSizeY() - Method in class loci.formats.in.ND2Handler
-
- getPixelSizeZ() - Method in class loci.formats.in.ND2Handler
-
- getPixelsPerLine() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the pixels per line for this Frame
.
- getPixelsPhysicalSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getPixelsPhysicalSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getPixelsPhysicalSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getPixelsTimeIncrement(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getPixelString(int) - Method in class loci.formats.in.DeltavisionReader
-
Get a descriptive string representing the pixel type.
- getPixelType() - Method in class loci.formats.FileStitcher
-
- getPixelType() - Method in class loci.formats.FormatReader
-
- getPixelType(String) - Method in class loci.formats.FormatReader
-
Retrieves an PixelType
enumeration
value for the given String.
- getPixelType(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Gets the pixel type of the given image.
- getPixelType() - Method in interface loci.formats.IFormatReader
-
Gets the pixel type.
- getPixelType() - Method in class loci.formats.ImageReader
-
- getPixelType(int) - Method in class loci.formats.in.DeltavisionReader
-
Get the OME pixel type from the pixel type stored in the file.
- getPixelType() - Method in class loci.formats.in.FilePatternReader
-
- getPixelType(int) - Method in class loci.formats.in.OBFReader
-
- getPixelType() - Method in class loci.formats.ReaderWrapper
-
- getPixelType() - Method in interface loci.formats.services.WlzService
-
Gets the image pixel type.
- getPixelType() - Method in class loci.formats.services.WlzServiceImpl
-
- getPixelType() - Method in class loci.formats.tiff.IFD
-
Retrieves the image's pixel type based on the BitsPerSample tag.
- getPixelType(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getPixelTypeFromString(String) - Method in class loci.formats.in.LiFlimReader
-
- getPixelTypes() - Method in class loci.formats.FormatWriter
-
- getPixelTypes(String) - Method in class loci.formats.FormatWriter
-
- getPixelTypes() - Method in interface loci.formats.IFormatWriter
-
Gets the supported pixel types.
- getPixelTypes(String) - Method in interface loci.formats.IFormatWriter
-
Gets the supported pixel types for the given codec.
- getPixelTypes() - Method in class loci.formats.ImageWriter
-
- getPixelTypes(String) - Method in class loci.formats.ImageWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.APNGWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.AVIWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.CellH5Writer
-
- getPixelTypes(String) - Method in class loci.formats.out.EPSWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.ICSWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.ImageIOWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.JavaWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.JPEG2000Writer
-
Overridden to return the formats supported by the writer.
- getPixelTypes(String) - Method in class loci.formats.out.JPEGWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.OMEXMLWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.QTWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.TiffWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.V3DrawWriter
-
- getPixelTypes(String) - Method in class loci.formats.out.WlzWriter
-
- getPixelTypes() - Method in class loci.formats.WriterWrapper
-
- getPixelTypes(String) - Method in class loci.formats.WriterWrapper
-
- getPixelTypeString(int) - Static method in class loci.formats.FormatTools
-
Takes a pixel type value and gets a corresponding string representation.
- getPixelValue(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getPlanarConfiguration() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getPlanarConfiguration() - Method in class loci.formats.tiff.IFD
-
Retrieves the image's planar configuration (TIFF tag PlanarConfiguration)
from this IFD.
- getPlane(int, int) - Method in class loci.formats.in.FV1000Reader
-
- getPlane(int[]) - Method in class loci.formats.in.OpenlabReader
-
- getPlaneByteOffset(int, int, int) - Method in class loci.formats.in.DeltavisionReader
-
Given any specific Z, W, and T of a plane, determine the absolute
byte offset of the plane in the file.
- getPlaneCount() - Method in class loci.formats.FormatWriter
-
Retrieve the total number of planes in the current series.
- getPlaneCount(int) - Method in class loci.formats.FormatWriter
-
Retrieve the total number of planes in given series.
- getPlaneCount() - Method in class loci.formats.out.CellH5Writer
-
- getPlaneCount() - Method in class loci.formats.out.TiffWriter
-
- getPlaneCount(int) - Method in class loci.formats.out.TiffWriter
-
- getPlaneIndex(IFormatReader, int) - Static method in class loci.plugins.macro.LociFunctions
-
Finds the Plane index corresponding to the given image plane number.
- getPlaneMaximum(int) - Method in class loci.formats.MinMaxCalculator
-
Retrieves the maximum pixel value for the specified plane.
- getPlaneMinimum(int) - Method in class loci.formats.MinMaxCalculator
-
Retrieves the minimum pixel value for the specified plane.
- getPlanePositionX(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
-
- getPlanePositionY(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
-
- getPlanePositionZ(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
-
- getPlanes() - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- getPlaneSize(IFormatReader) - Static method in class loci.formats.FormatTools
-
Returns the size in bytes of a single plane.
- getPlaneSize(IFormatReader, int, int) - Static method in class loci.formats.FormatTools
-
Returns the size in bytes of a w * h tile.
- getPlanesToLoad(int) - Method in class loci.plugins.in.ImagePlusReader
-
- getPlaneTimingDeltaT(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
-
- getPlaneTimingExposureTime(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
-
- getPlateColumns() - Method in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- getPlateColumns() - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- getPlateDescription() - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- getPlateIdentifier() - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- getPlateName(String) - Method in class loci.formats.in.CellomicsReader
-
- getPlateName() - Method in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- getPlateName() - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- getPlateRows() - Method in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- getPlateRows() - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- getPlateType() - Method in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- getPoints() - Method in enum loci.formats.in.BaseZeissReader.FeatureType
-
- getPoints(int) - Method in class loci.formats.in.FakeReader
-
- getPos() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
Returns the stream position clamped to a maximum of
Integer.MAX_VALUE
.
- getPos() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Returns the current offset in the file
- getPos() - Method in interface jj2000.j2k.io.RandomAccessIO
-
Returns the current position in the stream, which is the position from
where the next byte of data would be read.
- getPos() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Returns the current position in the stream, which is the
position from where the next byte of data would be read.
- getPos(int) - Method in class loci.formats.in.FluoviewReader
-
- getPosition(int) - Method in class loci.formats.in.ZeissLSMReader
-
- getPositionFromFile(String) - Method in class loci.formats.in.MIASReader
-
Returns an array of length 5 that contains the well, time point,
Z and channel indices corresponding to the given analysis file.
- getPositionNames() - Method in class loci.formats.in.ND2Handler
-
- getPositionX() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the X stage position associated with this Frame
.
- getPositionY() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the Y stage position associated with this Frame
.
- getPositionZ() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the Z stage position associated with this Frame
.
- getPossible(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the possible values for the string option with the given key.
- getPossible() - Method in class loci.plugins.prefs.StringOption
-
Gets the list of possible values.
- getPossibleDomains(String) - Method in class loci.formats.FormatReader
-
- getPossibleDomains(String) - Method in interface loci.formats.IFormatReader
-
Returns a list of scientific domains in which this format is used.
- getPossibleDomains(String) - Method in class loci.formats.ImageReader
-
- getPossibleDomains(String) - Method in class loci.formats.in.FilePatternReader
-
- getPossibleDomains(String) - Method in class loci.formats.ReaderWrapper
-
- getPossiblePositions() - Method in class loci.formats.cache.CacheStrategy
-
Gets positions to consider for possible inclusion in the cache,
assuming a current position at the origin (0).
- getPossiblePositions() - Method in class loci.formats.cache.CrosshairStrategy
-
- getPossiblePositions() - Method in class loci.formats.cache.RectangleStrategy
-
- getPowers() - Method in class loci.formats.in.ND2Handler
-
- getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the precinct partition width for the specified tile-component
and (tile-component) resolution level.
- getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the precinct partition width for the specified tile-component
and resolution level.
- getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder
-
Returns the precinct partition width for the specified component,
resolution level and tile.
- getPPX(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc
-
Returns the width of a packet for the specified tile-
component and resolution level.
- getPPX(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Returns the precinct partition width for the specified
component, tile and resolution level.
- getPPX(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec
-
Returns the precinct partition width in component 'n' and tile 't' at
resolution level 'rl'.
- getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the precinct partition height for the specified tile-component
and (tile-component) resolution level.
- getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the precinct partition height for the specified component, tile
and resolution level.
- getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder
-
Returns the precinct partition height for the specified component,
resolution level and tile.
- getPPY(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc
-
Returns the height of a packet for the specified tile-
component and resolution level.
- getPPY(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Returns the precinct partition height for the specified
component, tile and resolution level.
- getPPY(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec
-
Returns the precinct partition height in component 'n' and tile 't' at
resolution level 'rl'.
- getPrecedence() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Returns Precedence
.
- getPrecinctPartition() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets precinctPartition
- getPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder
-
Get PrecInfo instance of the specified resolution level, component and
precinct.
- getPrecInfo(int, int, int, int) - Method in class jj2000.j2k.codestream.writer.PktEncoder
-
Returns information about a given precinct
- getPref(String, Class<? extends IFormatReader>, boolean) - Static method in class loci.plugins.util.LociPrefs
-
- getPreferredCompressionType(ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- getPreferredCompressionType(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- getPreferredSize() - Method in class loci.formats.gui.CacheIndicator
-
- getPreferredSize() - Method in class loci.formats.gui.PreviewPane
-
- getPrefix() - Method in class loci.formats.FilePattern
-
Gets the pattern's substring that comes before any block sections.
- getPrefix(int) - Method in class loci.formats.FilePattern
-
Gets the pattern's substring between block i-1 (or the beginning
of the pattern, if i is 0) and block i.
- getPrefix(String) - Method in class loci.formats.in.ZeissTIFFReader
-
- getPrefixes() - Method in class loci.formats.FilePattern
-
Gets all block prefixes.
- getPrefixMetadataName(String) - Method in class loci.formats.in.MicromanagerReader
-
- getPreviewNameIndex(String) - Method in class loci.formats.in.FV1000Reader
-
- getPreviousSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- getPriorities() - Method in class loci.formats.cache.CacheStrategy
-
- getPriorities() - Method in interface loci.formats.cache.ICacheStrategy
-
Retrieves the priority for caching each axis.
- getProcessor(int) - Method in class loci.plugins.util.BFVirtualStack
-
- getProgressionName() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets progressionType
- getProgressionType() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets progressionType
.
- getProgressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets progressionType
- getProgressWatch() - Static method in class jj2000.j2k.util.FacilityManager
-
Returns the ProgressWatch instance registered with the current
thread (the thread that calls this method).
- getProperty(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Gets a property from the property set of this image.
- getProperty(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getPropertyNames() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns a list of the properties recognized by this image.
- getPropertyNames(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns an array of String
s recognized as names by
this property source that begin with the supplied prefix.
- getPropertyNames() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getPulse(String) - Method in class loci.formats.FormatReader
-
Retrieves an Pulse
enumeration
value for the given String.
- getQTVersion() - Method in class loci.formats.gui.LegacyQTTools
-
Gets the QuickTime for Java version number.
- getQuantizationStep() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets quantizationStep
- getQuantizationType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets quantizationType
- getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC
-
- getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD
-
- getQuantTypeSpec() - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns the quantization type spec object associated to the quantizer.
- getQuietInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getRange() - Method in class loci.formats.cache.CacheStrategy
-
- getRange() - Method in interface loci.formats.cache.ICacheStrategy
-
Retrieves the number of objects to cache along each axis.
- getRasterLength(int[]) - Static method in class loci.formats.FormatTools
-
Computes the number of raster values for a positional array
with the given lengths.
- getRaw() - Method in class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam
-
Returns the value of the raw
parameter.
- getRawImageType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Returns an ImageTypeSpecifier
describing an image
whose underlying data array has the same format as the raw
source pixel data.
- getRawImageTypeSpecifier(int, int, int, int[], int[], int[], char[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
A utility method that returns an
ImageTypeSpecifier
suitable for decoding an image
with the given parameters.
- getReader(int) - Method in class loci.formats.FileStitcher.ExternalSeries
-
- getReader() - Method in class loci.formats.FileStitcher
-
Gets the wrapped reader prototype.
- getReader(int) - Method in class loci.formats.FileStitcher
-
Gets the reader appropriate for use with the given image plane.
- getReader(int, int) - Method in class loci.formats.FileStitcher
-
Gets the reader that should be used with the given series and image plane.
- getReader(IFormatReader, Class<? extends IFormatReader>) - Static method in class loci.formats.FormatTools
-
Recursively look for the first underlying reader that is an
instance of the given class.
- getReader() - Method in class loci.formats.gui.FormatFileFilter
-
Returns the filter's reader.
- getReader(String) - Method in class loci.formats.ImageReader
-
Gets the reader used to open the given file.
- getReader() - Method in class loci.formats.ImageReader
-
Gets the reader used to open the current file.
- getReader(Class<? extends IFormatReader>) - Method in class loci.formats.ImageReader
-
Gets the file format reader instance matching the given class.
- getReader(String, boolean) - Method in class loci.formats.in.CellWorxReader
-
- getReader() - Method in class loci.formats.ReaderWrapper
-
Gets the wrapped reader.
- getReader() - Method in class loci.formats.services.JAIIIOServiceImpl
-
Set up the JPEG-2000 image reader.
- getReader() - Method in class loci.plugins.in.ImportProcess
-
- getReader() - Method in class loci.plugins.util.BFVirtualStack
-
- getReaders() - Method in class loci.formats.FileStitcher.ExternalSeries
-
- getReaders() - Method in class loci.formats.ImageReader
-
Gets all constituent file format readers.
- getReadOutRate() - Method in class loci.formats.in.MetamorphHandler
-
- getRealSTKFile(Location) - Method in class loci.formats.in.MetamorphReader
-
Check that the given STK file exists.
- getRecordedProcessor() - Method in class loci.plugins.util.BFVirtualStack
-
- getRed(int) - Method in class loci.formats.gui.Index16ColorModel
-
- getRed(int) - Method in class loci.formats.gui.SignedColorModel
-
- getRed(Object) - Method in class loci.formats.gui.SignedColorModel
-
- getRed(int) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getRed(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- getRedOffset(int) - Static method in class org.libjpegturbo.turbojpeg.TJ
-
For the given pixel format, returns the number of bytes that the red
component is offset from the start of the pixel.
- getReds() - Method in class loci.formats.gui.Index16ColorModel
-
Return the array of red color components.
- getReducedRect(Rectangle, int, int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Convert a rectangle provided in the coordinate system of the JPEG2000
reference grid to coordinates at a lower resolution level where zero
denotes the lowest resolution level.
- getRefractiveIndex() - Method in class loci.formats.in.ND2Handler
-
- getRelativeTime() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the relativeTime
associated with this Frame
.
- getReorderedIndex(IFormatReader, String, int) - Static method in class loci.formats.FormatTools
-
Converts index from the given dimension order to the reader's native one.
- getReorderedIndex(String, String, int, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Converts index from one dimension order to another.
- getRequiredDirectories(String[]) - Method in class loci.formats.FileStitcher
-
- getRequiredDirectories(String[]) - Method in class loci.formats.FormatReader
-
- getRequiredDirectories(String[]) - Method in interface loci.formats.IFormatReader
-
Returns the number of parent directories that are important when
processing the given list of files.
- getRequiredDirectories(String[]) - Method in class loci.formats.ImageReader
-
- getRequiredDirectories(String[]) - Method in class loci.formats.in.BrukerReader
-
- getRequiredDirectories(String[]) - Method in class loci.formats.in.CellVoyagerReader
-
- getRequiredDirectories(String[]) - Method in class loci.formats.in.ColumbusReader
-
- getRequiredDirectories(String[]) - Method in class loci.formats.in.DicomReader
-
- getRequiredDirectories(String[]) - Method in class loci.formats.in.MIASReader
-
- getRequiredDirectories(String[]) - Method in class loci.formats.in.OperettaReader
-
- getRequiredDirectories(String[]) - Method in class loci.formats.ReaderWrapper
-
- getResetMQ() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets resetMQ
- getResolution() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam
-
Gets resolution
.
- getResolution() - Method in class loci.formats.FormatReader
-
- getResolution() - Method in interface loci.formats.IFormatReader
-
Get the current resolution level.
- getResolution() - Method in class loci.formats.ImageReader
-
- getResolution() - Method in class loci.formats.in.FilePatternReader
-
- getResolution() - Method in class loci.formats.ReaderWrapper
-
- getResolutionCount() - Method in class loci.formats.FormatReader
-
- getResolutionCount() - Method in interface loci.formats.IFormatReader
-
Return the number of resolutions for the current series.
- getResolutionCount() - Method in class loci.formats.ImageReader
-
- getResolutionCount() - Method in class loci.formats.in.FilePatternReader
-
- getResolutionCount() - Method in class loci.formats.ReaderWrapper
-
- getResolutionLevels() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Returns the number of resolution levels the file JPEG 2000 data has.
- getResolutionMultiplier() - Method in class loci.formats.tiff.IFD
-
Retrieve the value by which to multiply the X and Y resolution so that
the resolutions are in microns per pixel.
- getResolutionUnitFromComment(IFD) - Method in class loci.formats.in.BaseTiffReader
-
Extracts the resolution unit symbol from the comment field
- getResource(String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getRestartMarkers() - Method in interface loci.formats.services.JPEGTurboService
-
- getRestartMarkers() - Method in class loci.formats.services.JPEGTurboServiceImpl
-
- getResULX(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the horizontal coordinate of the upper-left corner of the
specified resolution in the given component of the current tile.
- getResULX(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the horizontal coordinate of the upper-left corner of the
specified resolution in the given component of the current tile.
- getResULX(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the horizontal coordinate of the upper-left corner of the
specified resolution level in the given component of the current tile.
- getResULY(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the vertical coordinate of the upper-left corner of the
specified component in the given component of the current tile.
- getResULY(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the vertical coordinate of the upper-left corner of the
specified resolution in the given component of the current tile.
- getResULY(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the vertical coordinate of the upper-left corner of the
specified resolution in the given component of the current tile.
- getRevision(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getRGB() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- getRGBChannelCount() - Method in class loci.formats.FormatReader
-
- getRGBChannelCount() - Method in interface loci.formats.IFormatReader
-
Gets the number of channels returned with each call to openBytes.
- getRGBChannelCount() - Method in class loci.formats.ImageReader
-
- getRGBChannelCount() - Method in class loci.formats.in.FilePatternReader
-
- getRGBChannelCount() - Method in class loci.formats.ReaderWrapper
-
- getRGBChannelCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getRoi() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getROILen() - Method in class jj2000.j2k.codestream.writer.PktEncoder
-
Gives the length to read in current packet body to get all ROI
information
- getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
-
This functions gets a DataBlk the size of the current code-block an
fills this block with the ROI mask.
- getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator
-
This functions gets a DataBlk the size of the current code-block and
fills this block with the ROI mask.
- getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator
-
This functions gets a DataBlk with the size of the current code-block
and fills it with the ROI mask.
- getROIMaskGenerator() - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
This function returns the ROI mask generator.
- getROIs() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets ROIs
- getROIs() - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator
-
This function returns the ROIs in the image
- getROIs() - Method in class loci.formats.in.ND2Handler
-
- getROIs() - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to read and return meta data for upto 10 rectangular ROI's stored in the SPE header table
- getROIsMode() - Method in class loci.plugins.in.ImporterOptions
-
- getROIsModeInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getROIsModes() - Method in class loci.plugins.in.ImporterOptions
-
- getRootIFD() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getRootName() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- getRotationTransform(double) - Method in class loci.formats.FormatReader
-
Construct an AffineTransform
corresponding to
the given angle.
- getRow() - Method in class loci.formats.in.OMEXMLReader.BinData
-
- getRow(String) - Method in class loci.formats.in.ScreenReader
-
- getRow(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getRowAndColumn(int) - Method in class loci.formats.in.ScreenReader
-
- getRowCount(int) - Method in interface loci.formats.services.MetakitService
-
- getRowCount(String) - Method in interface loci.formats.services.MetakitService
-
- getRowCount(int) - Method in class loci.formats.services.MetakitServiceImpl
-
- getRowCount(String) - Method in class loci.formats.services.MetakitServiceImpl
-
- getRowData(String[], double[]) - Method in class loci.formats.in.TextReader
-
Parses numerical row data from the given tokens.
- getRowData(int, String) - Method in interface loci.formats.services.MetakitService
-
- getRowData(int, int) - Method in interface loci.formats.services.MetakitService
-
- getRowData(int, String) - Method in class loci.formats.services.MetakitServiceImpl
-
- getRowData(int, int) - Method in class loci.formats.services.MetakitServiceImpl
-
- getRowsPerStrip() - Method in class loci.formats.tiff.IFD
-
Retrieves the number of rows per strip for image (TIFF tag RowsPerStrip)
from this IFD.
- getSample(BitBuffer, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
-
Deprecated.
- getSample(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
-
- getSampleModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the SampleModel of the image.
- getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getSamples(IFD, byte[]) - Method in class loci.formats.tiff.TiffParser
-
- getSamples(IFD, byte[], int, int, long, long) - Method in class loci.formats.tiff.TiffParser
-
- getSamples(IFD, byte[], int, int, long, long, int, int) - Method in class loci.formats.tiff.TiffParser
-
- getSamplesPerPixel() - Method in class loci.formats.FormatWriter
-
Retrieve the number of samples per pixel for the current series.
- getSamplesPerPixel(int) - Method in class loci.formats.FormatWriter
-
Retrieve the number of samples per pixel for given series.
- getSamplesPerPixel() - Method in class loci.formats.tiff.IFD
-
Retrieves the number of samples per pixel for the image (TIFF tag
SamplesPerPixel) from this IFD.
- getScaled(int) - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor
-
Returns the scaled value of dimension
.
- getScaledHeight(int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Returns the height of the largest scaled down image that the TurboJPEG
decompressor can generate without exceeding the desired image width and
height.
- getScaledWidth(int, int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Returns the width of the largest scaled down image that the TurboJPEG
decompressor can generate without exceeding the desired image width and
height.
- getScalingFactors() - Static method in class org.libjpegturbo.turbojpeg.TJ
-
Returns a list of fractional scaling factors that the JPEG decompressor in
this implementation of TurboJPEG supports.
- getScanline(int) - Method in class loci.formats.codec.JPEGTileDecoder
-
- getScanlinePad() - Method in class loci.formats.in.NativeND2Reader
-
- getScanNames() - Method in class loci.formats.in.L2DReader
-
Return a list of scan names.
- getScreenName() - Method in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- getSegmentLength() - Method in class com.sun.media.imageio.stream.StreamSegment
-
Returns the length of the segment.
- getSequence() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the <Sequence>
containing this <Frame>
.
- getSequence(int) - Method in class loci.formats.in.PrairieMetadata
-
Gets the Sequence
at the given cycle
.
- getSequences() - Method in class loci.formats.in.PrairieMetadata
-
Gets all Sequences
, ordered by cycle
.
- getSeries() - Method in class loci.formats.FileStitcher
-
- getSeries() - Method in class loci.formats.FormatReader
-
- getSeries() - Method in class loci.formats.FormatWriter
-
- getSeries() - Method in interface loci.formats.IFormatReader
-
Gets the currently active series.
- getSeries() - Method in interface loci.formats.IFormatWriter
-
Returns the current series.
- getSeries() - Method in class loci.formats.ImageReader
-
- getSeries() - Method in class loci.formats.ImageWriter
-
- getSeries() - Method in class loci.formats.in.FilePatternReader
-
- getSeries() - Method in class loci.formats.ReaderWrapper
-
- getSeries() - Method in class loci.formats.WriterWrapper
-
- getSeries(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getSeriesCount() - Method in class loci.formats.FileStitcher
-
- getSeriesCount() - Method in class loci.formats.FormatReader
-
- getSeriesCount() - Method in interface loci.formats.IFormatReader
-
Gets the number of series in this file.
- getSeriesCount() - Method in class loci.formats.ImageReader
-
- getSeriesCount() - Method in class loci.formats.in.FilePatternReader
-
- getSeriesCount() - Method in class loci.formats.in.ND2Handler
-
- getSeriesCount() - Method in class loci.formats.ReaderWrapper
-
- getSeriesCount() - Method in class loci.formats.TileStitcher
-
- getSeriesCount() - Method in class loci.plugins.in.ImportProcess
-
- getSeriesCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getSeriesHashtable(int) - Method in class loci.formats.in.LeicaHandler
-
- getSeriesIndex(int, int, int) - Method in class loci.formats.in.MetamorphTiffReader
-
- getSeriesIndex(int, int) - Method in class loci.formats.in.ScreenReader
-
- getSeriesLabel(int) - Method in class loci.plugins.in.ImportProcess
-
- getSeriesMeta(String) - Method in class loci.formats.FormatReader
-
Gets an entry from the metadata table for the current series.
- getSeriesMetadata() - Method in class loci.formats.FileStitcher
-
- getSeriesMetadata() - Method in class loci.formats.FormatReader
-
- getSeriesMetadata() - Method in interface loci.formats.IFormatReader
-
Obtains the hashtable containing metadata field/value pairs from the
current series in the current file.
- getSeriesMetadata() - Method in class loci.formats.ImageReader
-
- getSeriesMetadata() - Method in class loci.formats.in.FilePatternReader
-
- getSeriesMetadata() - Method in class loci.formats.ReaderWrapper
-
- getSeriesMetadataValue(String) - Method in class loci.formats.FormatReader
-
- getSeriesMetadataValue(String) - Method in interface loci.formats.IFormatReader
-
Obtains the specified metadata field's value for the current series
in the current file.
- getSeriesMetadataValue(String) - Method in class loci.formats.ImageReader
-
- getSeriesMetadataValue(String) - Method in class loci.formats.in.FilePatternReader
-
- getSeriesMetadataValue(String) - Method in class loci.formats.ReaderWrapper
-
- getSeriesMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getSeriesName(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.DelegateReader
-
- getSeriesUsedFiles() - Method in class loci.formats.FileStitcher
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher
-
- getSeriesUsedFiles() - Method in class loci.formats.FormatReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader
-
- getSeriesUsedFiles() - Method in interface loci.formats.IFormatReader
-
Returns an array of filenames needed to open the current series.
- getSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader
-
Returns an array of filenames needed to open the current series.
- getSeriesUsedFiles() - Method in class loci.formats.ImageReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AFIReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AnalyzeReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.APLReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BDReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BioRadReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BrukerReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellomicsReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellSensReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellVoyagerReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellWorxReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ColumbusReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DeltavisionReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DicomReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FakeReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FilePatternReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FlexReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FujiReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FV1000Reader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HamamatsuVMSReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HitachiReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ICSReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImagicReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImprovisionTiffReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.InCellReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.JEOLReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.JPEGReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.L2DReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.LeicaReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MetamorphReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MIASReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MicromanagerReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NativeQTReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NDPISReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NiftiReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NRRDReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OMETiffReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OperettaReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PCORAWReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PDSReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PerkinElmerReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PrairieReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScanrReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScreenReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.SlidebookTiffReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.SPCReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TCSReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TiffReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TillVisionReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TrestleReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VarianFDFReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VisitechReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VolocityReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissCZIReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissLSMReader
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissTIFFReader
-
- getSeriesUsedFiles() - Method in class loci.formats.ReaderWrapper
-
- getSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
-
- getService() - Method in class loci.formats.Memoizer
-
- getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
Returns a TIFFIFD
wherein all fields from the
BaselineTIFFTagSet
are copied by value and all other
fields copied by reference.
- getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
Returns a TIFFImageMetadata
wherein all fields in the
root IFD from the BaselineTIFFTagSet
are copied by value
and all other fields copied by reference.
- getShape(String) - Method in interface loci.formats.services.JHDFService
-
Retrieves the shape of a dataset.
- getShape(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- getShort(SPEReader.SpeHeaderEntry) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to retrieve data values for Short entries into the SPE header table
- getShort(int) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to retrieve a Short value from the SPE header
- getShortArray(SPEReader.SpeHeaderEntry) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to retrieve data values for Short Array entries into the SPE header table
- getShortElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Gets its short value from an IIOMetadataNode
.
- getShorts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of unsigned shorts, one per channel.
- getShorts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of unsigned shorts, one per channel.
- getShorts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Extracts pixel data as arrays of unsigned shorts, one per channel.
- getShortValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getShowMetadataInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getShowOMEXMLInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getShowROIsInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getSize(int) - Static method in class jj2000.j2k.image.DataBlk
-
Returns the size in bits, given the data type.
- getSize() - Method in class jj2000.j2k.util.ThreadPool
-
Returns the size of the pool.
- getSize(Image) - Static method in class loci.formats.gui.AWTImageTools
-
Gets the width and height of the given AWT image,
waiting for it to finish loading if necessary.
- getSize() - Method in class loci.plugins.util.BFVirtualStack
-
- getSizeC() - Method in class loci.formats.ChannelFiller
-
- getSizeC() - Method in class loci.formats.DimensionSwapper
-
- getSizeC() - Method in class loci.formats.FileStitcher
-
- getSizeC() - Method in class loci.formats.FormatReader
-
- getSizeC() - Method in interface loci.formats.IFormatReader
-
Gets the size of the C dimension.
- getSizeC() - Method in class loci.formats.ImageReader
-
- getSizeC() - Method in class loci.formats.in.FilePatternReader
-
- getSizeC() - Method in class loci.formats.ReaderWrapper
-
- getSizeC() - Method in interface loci.formats.services.WlzService
-
Gets number of channels.
- getSizeC() - Method in class loci.formats.services.WlzServiceImpl
-
- getSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getSizeOfType(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Returns the number of bytes used to store a value of the given
data type.
- getSizeT() - Method in class loci.formats.DimensionSwapper
-
- getSizeT() - Method in class loci.formats.FileStitcher
-
- getSizeT() - Method in class loci.formats.FormatReader
-
- getSizeT() - Method in interface loci.formats.IFormatReader
-
Gets the size of the T dimension.
- getSizeT() - Method in class loci.formats.ImageReader
-
- getSizeT() - Method in class loci.formats.in.FilePatternReader
-
- getSizeT() - Method in class loci.formats.ReaderWrapper
-
- getSizeT() - Method in interface loci.formats.services.WlzService
-
Gets number of time samples.
- getSizeT() - Method in class loci.formats.services.WlzServiceImpl
-
- getSizeT(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getSizeX() - Method in class loci.formats.DimensionSwapper
-
- getSizeX() - Method in class loci.formats.FileStitcher
-
- getSizeX() - Method in class loci.formats.FormatReader
-
- getSizeX() - Method in interface loci.formats.IFormatReader
-
Gets the size of the X dimension.
- getSizeX() - Method in class loci.formats.ImageReader
-
- getSizeX() - Method in class loci.formats.in.FilePatternReader
-
- getSizeX() - Method in class loci.formats.ReaderWrapper
-
- getSizeX() - Method in interface loci.formats.services.WlzService
-
Gets width in pixels/voxels.
- getSizeX() - Method in class loci.formats.services.WlzServiceImpl
-
- getSizeX() - Method in class loci.formats.TileStitcher
-
- getSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getSizeY() - Method in class loci.formats.DimensionSwapper
-
- getSizeY() - Method in class loci.formats.FileStitcher
-
- getSizeY() - Method in class loci.formats.FormatReader
-
- getSizeY() - Method in interface loci.formats.IFormatReader
-
Gets the size of the Y dimension.
- getSizeY() - Method in class loci.formats.ImageReader
-
- getSizeY() - Method in class loci.formats.in.FilePatternReader
-
- getSizeY() - Method in class loci.formats.ReaderWrapper
-
- getSizeY() - Method in interface loci.formats.services.WlzService
-
Gets height in pixels/voxels.
- getSizeY() - Method in class loci.formats.services.WlzServiceImpl
-
- getSizeY() - Method in class loci.formats.TileStitcher
-
- getSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getSizeZ() - Method in class loci.formats.DimensionSwapper
-
- getSizeZ() - Method in class loci.formats.FileStitcher
-
- getSizeZ() - Method in class loci.formats.FormatReader
-
- getSizeZ() - Method in interface loci.formats.IFormatReader
-
Gets the size of the Z dimension.
- getSizeZ() - Method in class loci.formats.ImageReader
-
- getSizeZ() - Method in class loci.formats.in.FilePatternReader
-
- getSizeZ() - Method in class loci.formats.ReaderWrapper
-
- getSizeZ() - Method in interface loci.formats.services.WlzService
-
Gets depth (number of x-y planes) in voxels.
- getSizeZ() - Method in class loci.formats.services.WlzServiceImpl
-
- getSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getslice(int) - Method in class loci.formats.in.ZeissTIFFReader
-
- getSlopeFromSIndex(int) - Static method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Returns the minimum slope value associated with a summary table
index.
- getSnapshotPixels() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getSOP() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets SOP
.
- getSOP() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets SOP
- getSource() - Method in class loci.formats.cache.Cache
-
Gets the cache's caching source.
- getSource() - Method in class loci.formats.cache.CacheEvent
-
Gets the source of the cache update.
- getSources() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
- getSources() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getSpec(int, int) - Method in class jj2000.j2k.ModuleSpec
-
Gets value of specified tile-component without knowing if a
specific tile-component value has been previously entered.
- getSpecificationTitle() - Static method in class com.sun.media.imageioimpl.common.PackageUtil
-
Return the Specification Title string for the package.
- getSpecified() - Method in class jj2000.j2k.roi.MaxShiftSpec
-
- getSpecified() - Method in class jj2000.j2k.StringSpec
-
- getSpecifyRangesInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getSpectra() - Method in class loci.formats.in.IM3Reader
-
If a Nuance file is a spectral library set (.csl) file,
there is a spectral library inside that contains a profile
of spectral bin magnitudes for each of several measured
fluorophores (or auto fluorescence).
- getSpecValType(int, int) - Method in class jj2000.j2k.ModuleSpec
-
Return the spec type of the given tile-component.
- getSpeeds() - Method in class loci.formats.in.ND2Handler
-
- getSplitChannelsInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getSplitFocalPlanesInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getSplitTimepointsInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getSPWIndexes(int) - Method in class loci.formats.in.ScreenReader
-
- getSrcColor(int, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- getStackFormat() - Method in class loci.plugins.in.ImporterOptions
-
- getStackFormatInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getStackFormats() - Method in class loci.plugins.in.ImporterOptions
-
- getStackOrder() - Method in class loci.plugins.in.ImporterOptions
-
- getStackOrder() - Method in class loci.plugins.in.ImportProcess
-
- getStackOrderInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getStackOrders() - Method in class loci.plugins.in.ImporterOptions
-
- getStackSize() - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to determined the stack size of the SPE file.
- getStackType(String) - Method in class loci.formats.in.CellSensReader
-
- getStageLabel() - Method in class loci.formats.in.MetamorphHandler
-
- getStagePosition(Double, Unit<Length>) - Static method in class loci.formats.FormatTools
-
Formats the input value for the stage position into a length of the given
unit.
- getStagePosition(Double, String) - Static method in class loci.formats.FormatTools
-
Formats the input value for the stage position into a length of the given
unit.
- getStagePositionX() - Method in class loci.formats.in.MetamorphHandler
-
- getStagePositionY() - Method in class loci.formats.in.MetamorphHandler
-
- getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getStartLevelROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets startLevel
- getStartPos() - Method in class com.sun.media.imageio.stream.StreamSegment
-
Returns the starting position of the segment.
- getStartX() - Method in class loci.formats.in.SPEReader.SpeROI
-
- getStartY() - Method in class loci.formats.in.SPEReader.SpeROI
-
- getStatistics(int, int, double, double) - Method in class loci.plugins.util.VirtualImagePlus
-
- getStep() - Method in class loci.formats.FilePattern
-
Gets the STEP element for all blocks.
- getStep() - Method in class loci.formats.FilePatternBlock
-
Gets the difference between consecutive elements in a range block.
- getStep(int) - Static method in enum loci.plugins.in.ImportStep
-
- getStep() - Method in enum loci.plugins.in.ImportStep
-
- getStepSize(Hashtable<String, Object>) - Method in class loci.formats.in.MINCReader
-
- getStitchTilesInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getStrategy() - Method in class loci.formats.cache.Cache
-
Gets the cache's caching strategy.
- getStream() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Returns the ImageOutputStream
that will be written.
- getStream(int) - Method in class loci.formats.in.VolocityReader
-
- getStream() - Method in class loci.formats.in.ZeissCZIReader.Segment
-
- getStream() - Method in class loci.formats.tiff.OnDemandLongArray
-
- getStream() - Method in class loci.formats.tiff.TiffParser
-
Gets the stream from which TIFF data is being parsed.
- getStream() - Method in class loci.formats.tiff.TiffSaver
-
Gets the stream from which TIFF data is being saved.
- getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getStreamMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- getStreamPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- getStreams() - Method in class loci.formats.tools.AmiraParameters
-
- getStreamSegment(long, int) - Method in class com.sun.media.imageio.stream.SectorStreamSegmentMapper
-
- getStreamSegment(long, int, StreamSegment) - Method in class com.sun.media.imageio.stream.SectorStreamSegmentMapper
-
- getStreamSegment(long, int) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper
-
Returns a StreamSegment
object indicating the
location of the initial portion of a desired segment in the
source stream.
- getStreamSegment(long, int, StreamSegment) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper
-
Sets the values of a StreamSegment
object
indicating the location of the initial portion of a desired
segment in the source stream.
- getStreamSegment(long, int) - Method in class com.sun.media.imageio.stream.StreamSegmentMapperImpl
-
- getStreamSegment(long, int, StreamSegment) - Method in class com.sun.media.imageio.stream.StreamSegmentMapperImpl
-
- getString(String) - Static method in class com.sun.media.imageio.plugins.bmp.I18N
-
- getString(String) - Static method in class com.sun.media.imageio.stream.I18N
-
- getString(String) - Static method in class com.sun.media.imageioimpl.common.I18N
-
- getString(String, String) - Static method in class com.sun.media.imageioimpl.common.I18NImpl
-
Returns the message string with the specified key from the
"properties" file in the package containing the class with
the specified name.
- getString(String) - Static method in class com.sun.media.imageioimpl.plugins.bmp.I18N
-
- getString(String) - Static method in class com.sun.media.imageioimpl.plugins.clib.I18N
-
- getString(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg.I18N
-
- getString(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.I18N
-
- getString(String) - Static method in class com.sun.media.imageioimpl.plugins.png.I18N
-
- getString(String) - Static method in class com.sun.media.imageioimpl.plugins.pnm.I18N
-
- getString(String) - Static method in class com.sun.media.imageioimpl.plugins.raw.I18N
-
- getString(String) - Static method in class com.sun.media.imageioimpl.plugins.tiff.I18N
-
- getString(String) - Static method in class com.sun.media.imageioimpl.plugins.wbmp.I18N
-
- getString(String) - Static method in class com.sun.media.jai.imageioimpl.I18N
-
- getString(String) - Static method in class com.sun.media.jai.operator.I18N
-
- getString(int) - Method in class loci.formats.in.LeicaReader
-
- getString(boolean) - Method in class loci.formats.in.LeicaReader
-
- getString(SPEReader.SpeHeaderEntry) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Method used to retrieve data values for String entries into the SPE header table
- getString(int, int) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to retrieve a String value from the SPE header
- getString(Integer) - Method in class loci.formats.in.VolocityReader
-
- getStringAttribute(Node, String, String, boolean, String[]) - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- getStringElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Gets its String
value from an IIOMetadataNode
.
- getStringOption(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the string option with the given key.
- getStringValue(Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- getStringValue(int) - Method in class loci.formats.in.ZeissLSMReader.SubBlock
-
- getStringWidth(String) - Method in class loci.plugins.util.RecordedImageProcessor
-
- getStripByteCounts() - Method in class loci.formats.tiff.IFD
-
Retrieves strip byte counts for the image (TIFF tag StripByteCounts) from
this IFD.
- getStripOffsets() - Method in class loci.formats.tiff.IFD
-
Retrieves the strip offsets for the image (TIFF tag StripOffsets) from
this IFD.
- getStripOrTileByteCountsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- getStripOrTileOffsetsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- getSubband(int, int) - Method in class jj2000.j2k.wavelet.Subband
-
Returns a reference to the Subband element to which the specified point
belongs.
- getSubbandByIdx(int, int) - Method in class jj2000.j2k.wavelet.Subband
-
Returns a subband element in the tree, given its resolution level and
subband index.
- getSubbandRectROIMask(int, int) - Method in class jj2000.j2k.roi.encoder.SubbandROIMask
-
Returns a reference to the Subband mask element to which the specified
point belongs.
- getSubimage(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Returns a subimage of the specified image.
- getSubimage(byte[], byte[], int, int, int, int, int, int, int, int, boolean) - Static method in class loci.formats.ImageTools
-
- getSubsamp() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Returns the level of chrominance subsampling used in the JPEG image
associated with this decompressor instance.
- getSuffix() - Method in class loci.formats.FilePattern
-
Gets the pattern's substring that comes after all block sections.
- getSuffixes() - Method in class loci.formats.FormatHandler
-
- getSuffixes() - Method in interface loci.formats.IFormatHandler
-
Gets the default file suffixes for this file format.
- getSuffixes() - Method in class loci.formats.ImageReader
-
- getSuffixes() - Method in class loci.formats.ImageWriter
-
- getSuffixes() - Method in class loci.formats.ReaderWrapper
-
- getSuffixes() - Method in class loci.formats.WriterWrapper
-
- getSupPixelTypes() - Method in interface loci.formats.services.WlzService
-
Gets supported pixel types.
- getSupPixelTypes() - Method in class loci.formats.services.WlzServiceImpl
-
- getSupportedMetadataLevels() - Method in class loci.formats.DelegateReader
-
- getSupportedMetadataLevels() - Method in class loci.formats.FormatHandler
-
- getSupportedMetadataLevels() - Method in class loci.formats.ImageReader
-
- getSupportedMetadataLevels() - Method in class loci.formats.ImageWriter
-
- getSupportedMetadataLevels() - Method in interface loci.formats.IMetadataConfigurable
-
- getSupportedMetadataLevels() - Method in class loci.formats.ReaderWrapper
-
- getSupportedMetadataLevels() - Method in class loci.formats.WriterWrapper
-
- getSwapDimensionsInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the negative support of the high-pass synthesis
filter.
- getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the negative support of the high-pass synthesis filter.
- getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the negative support of the high-pass synthesis filter.
- getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the negative support of the high-pass synthesis filter.
- getSynHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the negative support of the high-pass synthesis
filter.
- getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the positive support of the high-pass synthesis
filter.
- getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the positive support of the high-pass synthesis filter.
- getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the positive support of the high-pass synthesis filter.
- getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the positive support of the high-pass synthesis filter.
- getSynHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the positive support of the high-pass synthesis
filter.
- getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the negative support of the low-pass synthesis
filter.
- getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the negative support of the low-pass synthesis filter.
- getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the negative support of the low-pass synthesis filter.
- getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the negative support of the low-pass synthesis filter.
- getSynLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the negative support of the low-pass synthesis
filter.
- getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the positive support of the low-pass synthesis
filter.
- getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the positive support of the low-pass synthesis filter.
- getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the positive support of the low-pass synthesis filter.
- getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the positive support of the low-pass synthesis filter.
- getSynLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the positive support of the low-pass synthesis
filter.
- getSynSubbandTree(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the subband tree, for the specified tile-component.
- getSynSubbandTree(int, int) - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder
-
Returns the subband tree, for the specified tile-component.
- getSynSubbandTree(int, int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
Returns the subband tree, for the specified tile-component.
- getSynSubbandTree(int, int) - Method in class jj2000.j2k.roi.ROIDeScaler
-
Returns the subband tree, for the specified tile-component.
- getSynSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the specified synthesis subband tree
- getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData
-
Returns the subband tree, for the specified tile-component.
- getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the specified synthesis subband tree
- getT() - Method in class loci.formats.gui.ImageViewer
-
Gets the T value of the currently displayed image.
- getTableCount() - Method in interface loci.formats.services.MetakitService
-
- getTableCount() - Method in class loci.formats.services.MetakitServiceImpl
-
- getTableData(String) - Method in interface loci.formats.services.MetakitService
-
- getTableData(int) - Method in interface loci.formats.services.MetakitService
-
- getTableData(String) - Method in class loci.formats.services.MetakitServiceImpl
-
- getTableData(int) - Method in class loci.formats.services.MetakitServiceImpl
-
- getTableNames() - Method in interface loci.formats.services.MetakitService
-
- getTableNames() - Method in class loci.formats.services.MetakitServiceImpl
-
- getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Returns the
TIFFTag
which has tag number equal to
tagNumber
or
null
if no such tag
exists in the
TIFFTagSet
s associated with this
directory.
- getTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Retrieves the tag associated with this field.
- getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
-
Returns the TIFFTag
from this set that is
associated with the given tag number, or null
if
no tag exists for that number.
- getTag(String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
-
Returns the TIFFTag
having the given tag name, or
null
if the named tag does not belong to this tag set.
- getTag(int, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- getTag(String, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- getTag() - Method in class loci.formats.tiff.TiffIFDEntry
-
Retrieves the entry's Tag value.
- getTagName(int) - Method in class loci.formats.in.CellSensReader
-
- getTagNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
-
Retrieves an unmodifiable lexicographically increasing set of tag names.
- getTagNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Retrieves the tag number in the range [0, 65535]
.
- getTagNumbers() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet
-
Retrieves an unmodifiable numerically increasing set of tag numbers.
- getTags() - Method in interface loci.formats.services.EXIFService
-
- getTags() - Method in class loci.formats.services.EXIFServiceImpl
-
- getTagSet() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Returns the TIFFTagSet
of which this tag is a part.
- getTagSetList() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- getTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Returns the
TIFFTagSet
s of which this directory is aware.
- getTargetBitrate(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo
-
Returns the target bitrate of the optmimization point 'n'.
- getTargetNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Return the target number of read bytes.
- getTargetRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Return the target decoding rate in bits per pixel.
- getTBegin(int) - Method in class loci.plugins.in.ImporterOptions
-
- getTBegin(int) - Method in class loci.plugins.in.ImportProcess
-
- getTCount(int) - Method in class loci.plugins.in.ImportProcess
-
- getTemperature() - Method in class loci.formats.in.MetamorphHandler
-
- getTemperatures() - Method in class loci.formats.in.ND2Handler
-
- getTEnd(int) - Method in class loci.plugins.in.ImporterOptions
-
- getTEnd(int) - Method in class loci.plugins.in.ImportProcess
-
- getTerminateOnByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Gets terminateOnByte
- getTFrames(int) - Method in class loci.formats.in.LegacyND2Reader
-
- getThreadConcurrency() - Static method in class jj2000.j2k.util.NativeServices
-
Returns the current concurrency level.
- getThreadConcurrencyN() - Static method in class jj2000.j2k.util.NativeServices
-
Calls the POSIX threads 'pthread_getconcurrency', or equivalent,
function and return the result.
- getThumbnailIFDs() - Method in class loci.formats.in.MinimalTiffReader
-
Gets the list of IFDs associated with the current TIFF's thumbnails.
- getThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser
-
Returns thumbnail IFDs.
- getThumbSizeX() - Method in class loci.formats.FileStitcher
-
- getThumbSizeX() - Method in class loci.formats.FormatReader
-
- getThumbSizeX() - Method in interface loci.formats.IFormatReader
-
Get the size of the X dimension for the thumbnail.
- getThumbSizeX() - Method in class loci.formats.ImageReader
-
- getThumbSizeX() - Method in class loci.formats.in.FilePatternReader
-
- getThumbSizeX() - Method in class loci.formats.in.LeicaSCNReader
-
- getThumbSizeX() - Method in class loci.formats.in.MinimalTiffReader
-
- getThumbSizeX() - Method in class loci.formats.ReaderWrapper
-
- getThumbSizeY() - Method in class loci.formats.FileStitcher
-
- getThumbSizeY() - Method in class loci.formats.FormatReader
-
- getThumbSizeY() - Method in interface loci.formats.IFormatReader
-
Get the size of the Y dimension for the thumbnail.
- getThumbSizeY() - Method in class loci.formats.ImageReader
-
- getThumbSizeY() - Method in class loci.formats.in.FilePatternReader
-
- getThumbSizeY() - Method in class loci.formats.in.LeicaSCNReader
-
- getThumbSizeY() - Method in class loci.formats.in.MinimalTiffReader
-
- getThumbSizeY() - Method in class loci.formats.ReaderWrapper
-
- getTIFFCompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
Returns the TIFFCompressor
that is currently set
to be used by the ImageWriter
to encode each image
strip or tile, or null
if none has been set.
- getTIFFDecompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
Returns the TIFFDecompressor
that is currently set
to be used by the ImageReader
to decode each image
strip or tile, or null
if none has been set.
- getTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Retrieves a TIFF field from the directory.
- getTIFFField(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- getTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Retrieves all TIFF fields from the directory.
- getTiffFiles(String, char, int, int, int) - Method in class loci.formats.in.CellWorxReader
-
- getTIFFList() - Method in class loci.formats.in.LeicaReader
-
- getTiffs() - Method in class loci.formats.in.BDReader
-
- getTile(int, int) - Method in class com.sun.media.imageioimpl.common.SingleTileRenderedImage
-
Returns the image's Raster as tile (0, 0).
- getTile(int, int, WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
-
- getTile(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the coordinates of the current tile.
- getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.EmptyImage
-
- getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getTile(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the indexes of the current tile.
- getTile(Point) - Method in interface jj2000.j2k.image.ImgData
-
Returns the indixes of the current tile.
- getTile(Point) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the indexes of the current tile.
- getTile(Point) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the coordinates of the current tile.
- getTile(Point) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the coordinates of the current tile.
- getTile(Point) - Method in class jj2000.j2k.image.Tiler
-
Returns the horizontal and vertical indexes of the current tile.
- getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the indixes of the current tile.
- getTile(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the indexes of the current tile.
- getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the indexes of the current tile.
- getTile(int, int, int, int, Region) - Method in class loci.formats.in.MIASReader
-
- getTile(byte[], Region, Region) - Method in class loci.formats.out.TiffWriter
-
- getTile(byte[], int, int, int, int) - Method in interface loci.formats.services.JPEGTurboService
-
- getTile(int, int) - Method in interface loci.formats.services.JPEGTurboService
-
- getTile(byte[], int, int, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl
-
- getTile(int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl
-
- getTile(IFD, byte[], int, int) - Method in class loci.formats.tiff.TiffParser
-
- getTile0Rect() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Returns the bounding rectangle of the upper left tile at
the current resolution level.
- getTileCompHeight(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getTileCompHeight(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the height in pixels of the specified tile-component for the
given (tile-component) resolution level.
- getTileCompHeight(int, int) - Method in interface jj2000.j2k.image.ImgData
-
Returns the height in pixels of the specified tile-component.
- getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the height in pixels of the specified tile-component.
- getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the height in pixels of the specified tile-component.
- getTileCompHeight(int, int) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the height in pixels of the specified tile-component.
- getTileCompHeight(int, int) - Method in class jj2000.j2k.image.Tiler
-
Returns the height in pixels of the specified tile-component.
- getTileCompHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the height in pixels of the specified tile-component.
- getTileCompHeight(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the height in pixels of the specified tile-component for the
given resolution level.
- getTileCompHeight(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the height in pixels of the specified tile-component for the
given resolution level.
- getTileCompVal(int, int) - Method in class jj2000.j2k.ModuleSpec
-
Gets value of specified tile-component.
- getTileCompWidth(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getTileCompWidth(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the width in pixels of the specified tile-component for the
given (tile-component) resolution level.
- getTileCompWidth(int, int) - Method in interface jj2000.j2k.image.ImgData
-
Returns the width in pixels of the specified tile-component
- getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the width in pixels of the specified tile-component
tile.
- getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the width in pixels of the specified tile-component
- getTileCompWidth(int, int) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the width in pixels of the specified tile-component.
- getTileCompWidth(int, int) - Method in class jj2000.j2k.image.Tiler
-
Returns the width in pixels of the specified tile-component.
- getTileCompWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the width in pixels of the specified tile-component
- getTileCompWidth(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the width in pixels of the specified tile-component for the
given resolution level.
- getTileCompWidth(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the width in pixels of the specified tile-component for the
given resolution level.
- getTileDef(int) - Method in class jj2000.j2k.ModuleSpec
-
Gets default value of the specified tile.
- getTileFilename(int, int, int, String) - Static method in class loci.formats.FormatTools
-
- getTileGridXOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the X coordinate of the upper-left pixel of tile (0, 0).
- getTileGridXOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getTileGridYOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the Y coordinate of the upper-left pixel of tile (0, 0).
- getTileGridYOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getTileHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the height of a tile.
- getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the overall height of the current tile in pixels.
- getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getTileHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the overall height of the current tile in pixels, for the given
resolution level.
- getTileHeight() - Method in interface jj2000.j2k.image.ImgData
-
Returns the overall height of the current tile in pixels.
- getTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the overall height of the current tile in pixels.
- getTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the overall height of the current tile in pixels.
- getTileHeight() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the overall height of the current tile in pixels, assuming
there is no-tiling.
- getTileHeight() - Method in class jj2000.j2k.image.Tiler
-
Returns the overall height of the current tile in pixels.
- getTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the overall height of the current tile in pixels.
- getTileHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the overall height of the current tile in pixels, for the given
resolution level.
- getTileHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the overall height of the current tile in pixels, for the given
resolution level.
- getTileIdx() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIdx() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIdx() - Method in interface jj2000.j2k.image.ImgData
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIdx() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIdx() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIdx() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIdx() - Method in class jj2000.j2k.image.Tiler
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIdx() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the index of the current tile, relative to a standard scan-line
order.
- getTileIndex(int) - Method in class loci.formats.in.LIFReader
-
- getTileLength() - Method in class loci.formats.tiff.IFD
-
Returns the length of an image tile.
- getTileNum(int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- getTileOff(Point, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the horizontal and vertical offset of the upper-left corner of
the current tile, in the specified component, relative to the canvas
origin, in the component coordinates (not in the reference grid
coordinates).
- getTileOrStripByteCount(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getTileOrStripHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getTileOrStripOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getTileOrStripWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getTilePartULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getTilePartULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the horizontal offset of tile partition
- getTilePartULX() - Method in interface jj2000.j2k.image.ImgData
-
Returns the horizontal tile partition offset in the reference grid
- getTilePartULX() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the horizontal tile partition offset in the reference grid
- getTilePartULX() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the horizontal tile partition offset in the reference grid
- getTilePartULX() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the horizontal tile partition offset in the reference grid
- getTilePartULX() - Method in class jj2000.j2k.image.Tiler
-
Returns the horizontal tile partition offset in the reference grid
- getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the horizontal tile partition offset in the reference grid
- getTilePartULX() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the horizontal tile partition offset in the reference grid
- getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the horizontal tile partition offset in the reference grid
- getTilePartULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- getTilePartULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the vertical offset of tile partition
- getTilePartULY() - Method in interface jj2000.j2k.image.ImgData
-
Returns the vertical tile partition offset in the reference grid
- getTilePartULY() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the vertical tile offset in the reference grid
- getTilePartULY() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the vertical tile partition offset in the reference grid
- getTilePartULY() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the vertical tile partition offset in the reference grid
- getTilePartULY() - Method in class jj2000.j2k.image.Tiler
-
Returns the vertical tile partition offset in the reference grid
- getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the vertical tile partition offset in the reference grid
- getTilePartULY() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the vertical tile partition offset in the reference grid
- getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the vertical tile partition offset in the reference grid
- getTileSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
- getTileSize() - Method in class loci.formats.in.CellSensReader
-
- getTileSizeX() - Method in class loci.formats.FormatWriter
-
- getTileSizeX() - Method in interface loci.formats.IFormatWriter
-
Retrieves the current tile width
Defaults to full image width if not supported
- getTileSizeX() - Method in class loci.formats.ImageWriter
-
- getTileSizeX() - Method in class loci.formats.out.TiffWriter
-
- getTileSizeX() - Method in class loci.formats.WriterWrapper
-
- getTileSizeY() - Method in class loci.formats.FormatWriter
-
- getTileSizeY() - Method in interface loci.formats.IFormatWriter
-
Retrieves the current tile height
Defaults to full image height if not supported
- getTileSizeY() - Method in class loci.formats.ImageWriter
-
- getTileSizeY() - Method in class loci.formats.out.TiffWriter
-
- getTileSizeY() - Method in class loci.formats.WriterWrapper
-
- getTilesPerColumn() - Method in class loci.formats.tiff.IFD
-
Returns the number of image tiles per column.
- getTilesPerRow() - Method in class loci.formats.tiff.IFD
-
Returns the number of image tiles per row.
- getTileWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the width of a tile.
- getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns the width of the current tile in pixels.
- getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getTileWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Returns the overall width of the current tile in pixels for the given
(tile) resolution level.
- getTileWidth() - Method in interface jj2000.j2k.image.ImgData
-
Returns the overall width of the current tile in pixels.
- getTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter
-
Returns the overall width of the current tile in pixels.
- getTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns the overall width of the current tile in pixels.
- getTileWidth() - Method in class jj2000.j2k.image.input.ImgReader
-
Returns the width of the current tile in pixels, assuming there is
no-tiling.
- getTileWidth() - Method in class jj2000.j2k.image.Tiler
-
Returns the overall width of the current tile in pixels.
- getTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Returns the overall width of the current tile in pixels.
- getTileWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Returns the overall width of the current tile in pixels for the given
resolution level.
- getTileWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Returns the overall width of the current tile in pixels, for the given
resolution level.
- getTileWidth() - Method in class loci.formats.tiff.IFD
-
Returns the width of an image tile.
- getTilingOrigin(Point) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the tiling origin, referred to as '(Px,Py)' in the 'ImgData'
interface.
- getTilingOrigin(Point) - Method in class jj2000.j2k.image.Tiler
-
Returns the tiling origin, referred to as '(xt0siz,yt0siz)' in the
codestream header (SIZ marker segment).
- getTime(Double, String) - Static method in class loci.formats.FormatTools
-
Formats the input value for the time into a length of the
given unit.
- getTimeBinCount() - Method in class loci.formats.in.SDTReader
-
Gets the number of bins in the lifetime histogram.
- getTimepoint(int) - Method in class loci.formats.in.ZeissTIFFReader
-
- getTimepoints() - Method in class loci.formats.in.ND2Handler
-
- getTimestamp(String) - Method in class loci.formats.in.BDReader
-
- getTimestamp(String) - Method in class loci.formats.in.SlidebookTiffReader
-
- getTimestampIndex(String) - Method in class loci.formats.in.PCIReader
-
- getTimestamps() - Method in class loci.formats.in.MetamorphHandler
-
- getTiming(int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
Returns the wall time spent by this compressor for component 'c'
since the last call to this method (or the creation of this
compressor if not yet called).
- getTotalOffset(int, int, int) - Method in class loci.formats.in.DeltavisionReader
-
Given any specific Z, W, and T of a plane, determine the totalOffset from
the start of the extended header.
- getTotBitrate() - Method in class jj2000.j2k.entropy.encoder.LayersInfo
-
Returns the overall target bitrate for the entire bit stream.
- getTotNumLayers() - Method in class jj2000.j2k.entropy.encoder.LayersInfo
-
Returns the total number of layers, according to the layer
specification of this object and the overall target bitrate.
- getTransformedSizes() - Method in class org.libjpegturbo.turbojpeg.TJTransformer
-
Returns an array containing the sizes of the transformed JPEG images from
the most recent call to
transform()
.
- getTransparency(String) - Static method in class com.sun.media.imageio.stream.RawImageInputStream
-
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class loci.formats.gui.XMLCellRenderer
-
- getTStep(int) - Method in class loci.plugins.in.ImporterOptions
-
- getTStep(int) - Method in class loci.plugins.in.ImportProcess
-
- getType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns the type of the data stored in the field.
- getType(int) - Static method in class com.sun.media.imageioimpl.common.BogusColorSpace
-
Return the type given the number of components.
- getType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Returns the box type.
- getType() - Method in class loci.formats.cache.CacheEvent
-
Gets the type of cache update.
- getType() - Method in class loci.formats.gui.TwoChannelColorSpace
-
- getType() - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the type
associated with this Sequence
.
- getType() - Method in class loci.formats.tiff.TiffIFDEntry
-
Retrieves the entry's Type value.
- getTypeByName(String) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns the data type constant corresponding to the supplied data
type name.
- getTypeByName(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Returns the type String based on the provided name.
- getTypeInt(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Converts the box type from integer to string.
- getTypeName(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns the name of the supplied data type constant.
- getTypes() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Returns the channel types.
- getTypeString(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Converts the box type from integer to string.
- getUnderlyingReaders() - Method in class loci.formats.FileStitcher
-
- getUnderlyingReaders() - Method in class loci.formats.FormatReader
-
- getUnderlyingReaders() - Method in interface loci.formats.IFormatReader
-
Retrieves all underlying readers.
- getUnderlyingReaders() - Method in class loci.formats.ImageReader
-
- getUnderlyingReaders() - Method in class loci.formats.in.FilePatternReader
-
- getUnderlyingReaders() - Method in class loci.formats.ReaderWrapper
-
- getUngroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getUniverse() - Method in class loci.formats.gui.LegacyQTTools
-
Gets QuickTime for Java reflected universe.
- getUnknownColorspace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
Returns the UnknowColorspace
flag.
- getUnpackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Returns the binary data unpacked into an array of bytes.
- getUpgradeCheckInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getURL() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
Returns the URL
data element.
- getUsedFile(Double, String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getUsedFileCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getUsedFiles() - Method in class loci.formats.FileStitcher
-
- getUsedFiles(boolean) - Method in class loci.formats.FileStitcher
-
- getUsedFiles() - Method in class loci.formats.FormatReader
-
- getUsedFiles(boolean) - Method in class loci.formats.FormatReader
-
- getUsedFiles() - Method in interface loci.formats.IFormatReader
-
Returns an array of filenames needed to open this dataset.
- getUsedFiles(boolean) - Method in interface loci.formats.IFormatReader
-
Returns an array of filenames needed to open this dataset.
- getUsedFiles() - Method in class loci.formats.ImageReader
-
- getUsedFiles(boolean) - Method in class loci.formats.ImageReader
-
- getUsedFiles(boolean) - Method in class loci.formats.in.FilePatternReader
-
- getUsedFiles(boolean) - Method in class loci.formats.in.InveonReader
-
- getUsedFiles(boolean) - Method in class loci.formats.in.MetamorphTiffReader
-
- getUsedFiles(boolean) - Method in class loci.formats.in.UnisokuReader
-
- getUsedFiles() - Method in class loci.formats.ReaderWrapper
-
- getUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
-
- getUUID() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
Returns the UUID of this box.
- getUUID(String) - Method in class loci.formats.in.ImprovisionTiffReader
-
- getUUID(String) - Method in class loci.formats.out.OMETiffWriter
-
Gets the UUID corresponding to the given filename.
- getValue(int, int) - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder
-
Returns the current value of the specified element in the tag
tree.
- getValue() - Method in enum loci.formats.in.BaseZeissReader.Charset
-
- getValue() - Method in enum loci.formats.in.BaseZeissReader.DrawStyle
-
- getValue() - Method in enum loci.formats.in.BaseZeissReader.FeatureType
-
- getValue() - Method in enum loci.formats.in.BaseZeissReader.FillStyle
-
- getValue() - Method in enum loci.formats.in.BaseZeissReader.LineEndPositions
-
- getValue() - Method in enum loci.formats.in.BaseZeissReader.LineEndStyle
-
- getValue() - Method in enum loci.formats.in.BaseZeissReader.PointStyle
-
- getValue() - Method in class loci.formats.in.BaseZeissReader.Tag
-
- getValue() - Method in enum loci.formats.in.BaseZeissReader.TextAlignment
-
- getValue(IRandomAccess) - Method in class loci.formats.in.IM3Reader.StringIM3Record
-
Return the string value for this record
- getValue(String) - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the value
of the given key
, beneath this
Frame
, inferring the value from the parent <Sequence>
or grandparent <PVScan>
section as needed.
- getValue(String) - Method in class loci.formats.in.PrairieMetadata
-
Gets the value
of the given key
, at the top-level
<PVScan>
element.
- getValue(String) - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the value
of the given key
, beneath this
Sequence
, inferring the value from the parent <PVScan>
section as needed.
- getValue() - Method in class loci.plugins.prefs.BooleanOption
-
Gets the current value of the option.
- getValue() - Method in class loci.plugins.prefs.DoubleOption
-
Gets the current value of the option.
- getValue(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the value of the string option with the given key.
- getValue() - Method in class loci.plugins.prefs.StringOption
-
Gets the current value of the option.
- getValueAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Returns a String
containing a human-readable
version of the data item.
- getValueCount() - Method in class loci.formats.tiff.TiffIFDEntry
-
Retrieves the entry's ValueCount value.
- getValueForKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation
-
Return just the value (i.e.
- getValueName(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Returns the mnemonic name associated with a particular value
that this tag's data may take on, or null
if
no name is present.
- getValueOffset() - Method in class loci.formats.tiff.TiffIFDEntry
-
Retrieves the entry's ValueOffset value.
- getValues() - Method in class loci.formats.in.PrairieMetadata.Frame
-
Gets the table of Frame
key/value pairs.
- getValues() - Method in class loci.formats.in.PrairieMetadata
-
Gets the table of PVScan
key/value pairs.
- getValues() - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets the table of Frame
key/value pairs.
- getVariableAttributes(String) - Method in interface loci.formats.services.NetCDFService
-
Retrieves all of a variable's attributes.
- getVariableAttributes(String) - Method in class loci.formats.services.NetCDFServiceImpl
-
- getVariableList() - Method in interface loci.formats.services.NetCDFService
-
Retrieves an exhaustive list of the HDF paths for all variables in the
HDF document.
- getVariableList() - Method in class loci.formats.services.NetCDFServiceImpl
-
- getVariableValue(String) - Method in interface loci.formats.services.NetCDFService
-
Retrieves a variable's value.
- getVariableValue(String) - Method in class loci.formats.services.NetCDFServiceImpl
-
- getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- getVendor() - Static method in class com.sun.media.imageioimpl.common.PackageUtil
-
Return a vendor string for the package.
- getVersion() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Deprecated.
- getVersion() - Static method in class com.sun.media.imageioimpl.common.PackageUtil
-
Return a version string for the package.
- getVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
Returns the Version
data element.
- getVersionNumber(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- getVertAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT
-
Returns the vertical analysis wavelet filters used in each
level, for the specified tile-component.
- getVertAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the vertical analysis wavelet filters used in each level, for
the specified component and tile.
- getVerticalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
Return the vertical resolution.
- getVerWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
This function returns the vertical wavelet filter relevant to this
subband
- getVerWFilter() - Method in class jj2000.j2k.wavelet.Subband
-
This function returns the vertical wavelet filter relevant to this
subband
- getVerWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
This function returns the vertical wavelet filter relevant to this
subband
- getVFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
-
Returns the vertical analysis filters to be used in component 'n' and
tile 't'.
- getVFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
-
Returns the vertical analysis filters to be used in component 'n' and
tile 't'.
- getVirtualInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getVirtualReader() - Method in class loci.plugins.in.ImportProcess
-
- getVoltage() - Method in class loci.formats.in.ND2Handler
-
- getVolumeName(int) - Method in class loci.formats.in.CellSensReader
-
- getVoxSzX() - Method in interface loci.formats.services.WlzService
-
Gets voxel width.
- getVoxSzX() - Method in class loci.formats.services.WlzServiceImpl
-
- getVoxSzY() - Method in interface loci.formats.services.WlzService
-
Gets voxel height.
- getVoxSzY() - Method in class loci.formats.services.WlzServiceImpl
-
- getVoxSzZ() - Method in interface loci.formats.services.WlzService
-
Gets voxel depth.
- getVoxSzZ() - Method in class loci.formats.services.WlzServiceImpl
-
- getWaitTime() - Method in class loci.formats.in.PrairieMetadata
-
Gets the waitTime
recorded in the configuration.
- getWavelength(Double, String) - Static method in class loci.formats.FormatTools
-
Formats the input value for the wavelength into a length of the
given unit.
- getWavelength(Double) - Static method in class loci.formats.FormatTools
-
- getWavelength(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
-
- getWavelengthMax() - Method in class loci.formats.in.PrairieMetadata.PFile
-
Gets the wavelengthMax
associated with this File
.
- getWavelengthMin() - Method in class loci.formats.in.PrairieMetadata.PFile
-
Gets the wavelengthMin
associated with this File
.
- getWavelengths() - Method in class loci.formats.in.IM3Reader.Spectrum
-
- getWavelengths() - Method in class loci.formats.in.MetamorphHandler
-
- getWell(int) - Method in class loci.formats.in.CellWorxReader
-
Retrieve the well index corresponding to the given series.
- getWell(String) - Method in class loci.formats.in.FlexReader
-
Returns a two-element array containing the well row and well column
corresponding to the given file.
- getWell(int) - Method in class loci.formats.in.MetamorphTiffReader
-
- getWellColumn(String) - Method in class loci.formats.in.CellomicsReader
-
- getWellColumn(int) - Method in class loci.formats.in.CellWorxReader
-
Retrieve the well column corresponding to the given series.
- getWellColumn(String) - Method in class loci.formats.in.MetamorphTiffReader
-
- getWellFromSeries(int) - Method in class loci.formats.in.InCellReader
-
- getWellName(String) - Method in class loci.formats.in.CellomicsReader
-
- getWellRow(String) - Method in class loci.formats.in.CellomicsReader
-
- getWellRow(int) - Method in class loci.formats.in.CellWorxReader
-
Retrieve the well row corresponding to the given series.
- getWellRow(String) - Method in class loci.formats.in.MetamorphTiffReader
-
- getWidgets() - Method in class loci.plugins.config.FlexWidgets
-
- getWidgets() - Method in interface loci.plugins.config.IFormatWidgets
-
- getWidgets() - Method in class loci.plugins.config.LIFWidgets
-
- getWidgets() - Method in class loci.plugins.config.ND2Widgets
-
- getWidgets() - Method in class loci.plugins.config.PictWidgets
-
- getWidgets() - Method in class loci.plugins.config.QTWidgets
-
- getWidgets() - Method in class loci.plugins.config.SDTWidgets
-
- getWidgets() - Method in class loci.plugins.config.TiffDelegateWidgets
-
- getWidgets() - Method in class loci.plugins.config.ZeissCZIWidgets
-
- getWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Returns the width of the image.
- getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
Returns the width of the image.
- getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- getWidth() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- getWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- getWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- getWidth() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder
-
Returns the number of leafs along the horizontal direction.
- getWidth() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Returns the number of leafs along the horizontal direction.
- getWidth() - Method in class loci.formats.codec.JPEGTileDecoder
-
- getWidth() - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- getWidth(int) - Method in class loci.formats.in.LegacyND2Reader
-
- getWidth() - Method in interface loci.formats.services.LuraWaveService
-
Wraps lwfDecoder.getWidth()
- getWidth() - Method in class loci.formats.services.LuraWaveServiceImpl
-
- getWidth(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack
-
- getWidth() - Method in class loci.plugins.util.BFVirtualStack
-
- getWidth() - Method in class loci.plugins.util.RecordedImageProcessor
-
- getWidth() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Returns the width of the JPEG image associated with this decompressor
instance.
- getWindowlessInfo() - Method in class loci.plugins.in.ImporterOptions
-
- getWlzOrgLabelName() - Method in interface loci.formats.services.WlzService
-
Gets the text string used for the Woolz origin label.
- getWlzOrgLabelName() - Method in class loci.formats.services.WlzServiceImpl
-
- getWrappedStream() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
-
- getWriteCodeStreamOnly() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Gets writeCodeStreamOnly
.
- getWriter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Returns the current ImageWriter
.
- getWriter(String) - Method in class loci.formats.ImageWriter
-
Gets the writer used to save the given file.
- getWriter() - Method in class loci.formats.ImageWriter
-
Gets the writer used to save the current file.
- getWriter(Class<? extends IFormatWriter>) - Method in class loci.formats.ImageWriter
-
Gets the file format writer instance matching the given class.
- getWriter() - Method in class loci.formats.WriterWrapper
-
Gets the wrapped writer.
- getWriters() - Method in class loci.formats.ImageWriter
-
Gets all constituent file format writers.
- getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
-
Returns the data type used by the filters in this object, as defined in
the 'DataBlk' interface for specified tile-component.
- getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
-
Returns the data type used by the filters in this object, as defined in
the 'DataBlk' interface for specified tile-component.
- getWTDataType() - Method in class jj2000.j2k.wavelet.WTFilterSpec
-
Returns the data type used by the filters in this object, as defined in
the 'DataBlk' interface.
- getX(int) - Method in class loci.formats.in.FakeReader
-
- getX(double[]) - Method in class loci.formats.in.TextReader
-
- getXFields() - Method in class loci.formats.in.ND2Handler
-
- getXML() - Method in class loci.formats.tools.EditTiffG
-
- getXPositions() - Method in class loci.formats.in.ND2Handler
-
- getXResolution() - Method in class loci.formats.tiff.IFD
-
Retrieve the X resolution (TIFF tag XResolution) from this IFD.
- getY(int) - Method in class loci.formats.in.FakeReader
-
- getY(double[]) - Method in class loci.formats.in.TextReader
-
- getYPositions() - Method in class loci.formats.in.ND2Handler
-
- getYResolution() - Method in class loci.formats.tiff.IFD
-
Retrieve the Y resolution (TIFF tag YResolution) from this IFD.
- getZ() - Method in class loci.formats.gui.ImageViewer
-
Gets the Z value of the currently displayed image.
- getZBegin(int) - Method in class loci.plugins.in.ImporterOptions
-
- getZBegin(int) - Method in class loci.plugins.in.ImportProcess
-
- getZCount(int) - Method in class loci.plugins.in.ImportProcess
-
- getZCTCoords(int) - Method in class loci.formats.ChannelMerger
-
- getZCTCoords(int) - Method in class loci.formats.ChannelSeparator
-
- getZCTCoords(int) - Method in class loci.formats.DimensionSwapper
-
- getZCTCoords(int) - Method in class loci.formats.FileStitcher
-
- getZCTCoords(int) - Method in class loci.formats.FormatReader
-
- getZCTCoords(IFormatReader, int) - Static method in class loci.formats.FormatTools
-
Gets the Z, C and T coordinates corresponding
to the given rasterized index value (real sizes).
- getZCTCoords(String, int, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Gets the Z, C and T coordinates corresponding to the given rasterized
index value (real sizes).
- getZCTCoords(String, int, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Gets the Z, C and T coordinates corresponding to the given
rasterized index value.
- getZCTCoords(int) - Method in interface loci.formats.IFormatReader
-
Gets the Z, C and T coordinates (real sizes) corresponding to the
given rasterized index value.
- getZCTCoords(int) - Method in class loci.formats.ImageReader
-
- getZCTCoords(int) - Method in class loci.formats.in.FilePatternReader
-
- getZCTCoords(int) - Method in class loci.formats.ReaderWrapper
-
- getZCTCoords(Double, Double[], Double[], Double[]) - Method in class loci.plugins.macro.LociFunctions
-
- getZCTModuloCoords(int) - Method in class loci.formats.ChannelMerger
-
- getZCTModuloCoords(int) - Method in class loci.formats.ChannelSeparator
-
- getZCTModuloCoords(int) - Method in class loci.formats.DimensionSwapper
-
- getZCTModuloCoords(int) - Method in class loci.formats.FileStitcher
-
- getZCTModuloCoords(int) - Method in class loci.formats.FormatReader
-
- getZCTModuloCoords(IFormatReader, int) - Static method in class loci.formats.FormatTools
-
Gets the Z, C, T, ModuloZ, ModuloC and ModuloZ coordinates
corresponding to the given rasterized index value (effective
sizes).
- getZCTModuloCoords(int) - Method in interface loci.formats.IFormatReader
-
Gets the Z, C, T, moduloZ, moduloC and moduloT coordinates
(effective sizes) corresponding to the given rasterized index
value.
- getZCTModuloCoords(int) - Method in class loci.formats.ImageReader
-
- getZCTModuloCoords(int) - Method in class loci.formats.ReaderWrapper
-
- getZEnd(int) - Method in class loci.plugins.in.ImporterOptions
-
- getZEnd(int) - Method in class loci.plugins.in.ImportProcess
-
- getZeroOffset(ImagePlus) - Static method in class loci.plugins.in.Colorizer
-
- getZoom() - Method in class loci.formats.in.MetamorphHandler
-
- getZPositions() - Method in class loci.formats.in.MetamorphHandler
-
- getZPositions() - Method in class loci.formats.in.ND2Handler
-
- getZSections() - Method in class loci.formats.in.ND2Handler
-
- getZSlices(int) - Method in class loci.formats.in.LegacyND2Reader
-
- getZStep(int) - Method in class loci.plugins.in.ImporterOptions
-
- getZStep(int) - Method in class loci.plugins.in.ImportProcess
-
- GIF_MAGIC_STRING - Static variable in class loci.formats.in.GIFReader
-
- GIFImageMetadata - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFImageMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- GIFImageMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- GIFImageMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFImageMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
-
- GIFImageMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFImageMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources
-
- GIFImageWriteParam - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFImageWriteParam(Locale) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriteParam
-
- GIFImageWriter - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFImageWriter(GIFImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- GIFImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- GIFMetadata - Class in com.sun.media.imageioimpl.plugins.gif
-
Class which adds utility DOM element attribute access methods to
IIOMetadata
for subclass use.
- GIFMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
- GIFReader - Class in loci.formats.in
-
GIFReader is the file format reader for Graphics Interchange Format
(GIF) files.
- GIFReader() - Constructor for class loci.formats.in.GIFReader
-
Constructs a new GIF reader.
- GIFStreamMetadata - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFStreamMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- GIFStreamMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- GIFStreamMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFStreamMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
-
- GIFStreamMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFStreamMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources
-
- GIFWritableImageMetadata - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFWritableImageMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata
-
- GIFWritableStreamMetadata - Class in com.sun.media.imageioimpl.plugins.gif
-
- GIFWritableStreamMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata
-
- global - Variable in class loci.formats.in.BMPReader
-
Offset to image data.
- globalColorTable - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- globalMetadata - Variable in class loci.formats.in.LeicaHandler
-
- gotHeader - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
Indicates whether the header is read.
- gotHeader - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Indicates whether the header is read.
- gotHeader - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- gotHeader - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
Indicates whether the header is read.
- gotHeader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- gotHeader - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
Indicates whether the header is read.
- gotxmin - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- gotymin - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- GPS_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
An array of bytes containing the values {'2', '2', '0',
'0'}
to be used with the "GPSVersionID" tag to indicate
GPS version 2.2.
- GPSAltitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSAltitude
-
- GPSAltitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSAltitudeRef
-
- GPSAreaInformation() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSAreaInformation
-
- GPSDateStamp() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDateStamp
-
- GPSDestBearing() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestBearing
-
- GPSDestBearingRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestBearingRef
-
- GPSDestDistance() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestDistance
-
- GPSDestDistanceRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestDistanceRef
-
- GPSDestLatitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLatitude
-
- GPSDestLatitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLatitudeRef
-
- GPSDestLongitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLongitude
-
- GPSDestLongitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDestLongitudeRef
-
- GPSDifferential() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDifferential
-
- GPSDOP() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSDOP
-
- GPSImgDirection() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSImgDirection
-
- GPSImgDirectionRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSImgDirectionRef
-
- GPSInfoIFDPointer() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet.GPSInfoIFDPointer
-
- GPSLatitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLatitude
-
- GPSLatitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLatitudeRef
-
- GPSLongitude() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLongitude
-
- GPSLongitudeRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSLongitudeRef
-
- GPSMapDatum() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSMapDatum
-
- GPSMeasureMode() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSMeasureMode
-
- GPSProcessingMethod() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSProcessingMethod
-
- GPSSatellites() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSSatellites
-
- GPSSpeed() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSSpeed
-
- GPSSpeedRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSSpeedRef
-
- GPSStatus() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSStatus
-
- GPSTimeStamp() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSTimeStamp
-
- GPSTrack() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSTrack
-
- GPSTrackRef() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSTrackRef
-
- GPSVersionID() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet.GPSVersionID
-
- gradient(int, int, int) - Method in class loci.formats.tools.MakeTestOmeTiff
-
- GRADIENT_LUT - Static variable in class loci.formats.in.CellSensReader
-
- GRAPHICS - Static variable in class loci.formats.in.GIFReader
-
- GRAPHICS_DOMAIN - Static variable in class loci.formats.FormatTools
-
Identifies the graphics domain.
- GRAY16 - Static variable in class loci.formats.in.ZeissCZIReader
-
- GRAY32 - Static variable in class loci.formats.in.ZeissCZIReader
-
- GRAY8 - Static variable in class loci.formats.in.ZeissCZIReader
-
Pixel type constants.
- GRAY_ALPHA - Static variable in class loci.formats.in.APNGReader
-
- GRAY_DOUBLE - Static variable in class loci.formats.in.ZeissCZIReader
-
- GRAY_FLOAT - Static variable in class loci.formats.in.ZeissCZIReader
-
- GRAY_RESPONSE_CURVE - Static variable in class loci.formats.tiff.IFD
-
- GRAY_RESPONSE_UNIT - Static variable in class loci.formats.tiff.IFD
-
- GRAY_RESPONSE_UNIT_HUNDRED_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "GrayResponseUnit" tag.
- GRAY_RESPONSE_UNIT_HUNDREDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "GrayResponseUnit" tag.
- GRAY_RESPONSE_UNIT_TEN_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "GrayResponseUnit" tag.
- GRAY_RESPONSE_UNIT_TENTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "GrayResponseUnit" tag.
- GRAY_RESPONSE_UNIT_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "GrayResponseUnit" tag.
- GrayResponseCurve() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.GrayResponseCurve
-
- GrayResponseUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.GrayResponseUnit
-
- GRAYSCALE - Static variable in class loci.formats.in.APNGReader
-
Color types.
- green - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- green - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- GREEN_GAIN - Static variable in class loci.formats.in.CellSensReader
-
- GREEN_OFFSET - Static variable in class loci.formats.in.CellSensReader
-
- GREEN_TO_RED_MIN - Static variable in class loci.plugins.in.Colorizer
-
- greenGain - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- greenMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- greenMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- greenOffset - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- greenOffset - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
- greenShort - Variable in class loci.formats.gui.Index16ColorModel
-
Lookup tables.
- greenX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- greenY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- greenZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- GREYSCALE_COMPRESSION - Static variable in class loci.formats.in.FlowSightReader
-
- GRID - Static variable in class loci.formats.in.FV1000Reader
-
- GRIDSIZE_OFFSET - Static variable in class loci.formats.in.MRCReader
-
- group - Variable in class loci.formats.FileStitcher
-
- group - Variable in class loci.formats.FormatReader
-
Whether or not to group multi-file formats.
- GROUP - Static variable in class loci.formats.in.GatanReader
-
Tag types.
- groupFiles(String[], MetadataStore) - Method in class loci.formats.in.FlexReader
-
- groupFiles() - Method in class loci.formats.in.TCSReader
-
- groupFilesBox - Variable in class loci.plugins.in.MainDialog
-
- groupX - Variable in class loci.formats.in.SPEReader.SpeROI
-
- groupY - Variable in class loci.formats.in.SPEReader.SpeROI
-
- growBuffer() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Grows the cache buffer by 'inc', upto a maximum of 'maxsize'.
- guardBits - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
The number of bits used for each tile-component in
the quantizer to avoid overflow.
- GuardBitsSpec - Class in jj2000.j2k.quantization
-
This class extends ModuleSpec class in order to hold specifications about
number of guard bits in each tile-component.
- GuardBitsSpec(int, int, byte) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec
-
Constructs an empty 'GuardBitsSpec' with specified number of tile and
components.
- GuardBitsSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec
-
Constructs a new 'GuardBitsSpec' for the specified number of components
and tiles and the arguments of "-Qguard_bits" option.
- GUITools - Class in loci.formats.gui
-
A utility class for working with graphical user interfaces.
- GUITools() - Constructor for class loci.formats.gui.GUITools
-
- gz - Variable in class loci.formats.in.LiFlimReader
-
Stream to use for reading gzip-compressed pixel data.
- gzip - Variable in class loci.formats.in.ICSReader
-
Whether or not the pixels are GZIP-compressed.
- gzip - Variable in class loci.formats.in.LiFlimReader
-
True if gzip compression was used to deflate the pixels.
- gzipStream - Variable in class loci.formats.in.ICSReader
-
- gzPos - Variable in class loci.formats.in.LiFlimReader
-
Image number indicating position in gzip stream.
- gzSeries - Variable in class loci.formats.in.LiFlimReader
-
Series number indicating position in gzip stream.
- I - Variable in class jj2000.j2k.entropy.decoder.MQDecoder
-
The current index of each context
- I - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The current index of each context
- i(String) - Method in class loci.formats.in.PrairieMetadata
-
Converts the given string to an
Integer
, or null if incompatible.
- I18N - Class in com.sun.media.imageio.plugins.bmp
-
- I18N() - Constructor for class com.sun.media.imageio.plugins.bmp.I18N
-
- I18N - Class in com.sun.media.imageio.stream
-
- I18N() - Constructor for class com.sun.media.imageio.stream.I18N
-
- I18N - Class in com.sun.media.imageioimpl.common
-
- I18N() - Constructor for class com.sun.media.imageioimpl.common.I18N
-
- I18N - Class in com.sun.media.imageioimpl.plugins.bmp
-
- I18N() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.I18N
-
- I18N - Class in com.sun.media.imageioimpl.plugins.clib
-
- I18N() - Constructor for class com.sun.media.imageioimpl.plugins.clib.I18N
-
- I18N - Class in com.sun.media.imageioimpl.plugins.jpeg
-
- I18N() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg.I18N
-
- I18N - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
- I18N() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.I18N
-
- I18N - Class in com.sun.media.imageioimpl.plugins.png
-
- I18N() - Constructor for class com.sun.media.imageioimpl.plugins.png.I18N
-
- I18N - Class in com.sun.media.imageioimpl.plugins.pnm
-
- I18N() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.I18N
-
- I18N - Class in com.sun.media.imageioimpl.plugins.raw
-
- I18N() - Constructor for class com.sun.media.imageioimpl.plugins.raw.I18N
-
- I18N - Class in com.sun.media.imageioimpl.plugins.tiff
-
- I18N() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.I18N
-
- I18N - Class in com.sun.media.imageioimpl.plugins.wbmp
-
- I18N() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.I18N
-
- I18N - Class in com.sun.media.jai.imageioimpl
-
- I18N() - Constructor for class com.sun.media.jai.imageioimpl.I18N
-
- I18N - Class in com.sun.media.jai.operator
-
- I18N() - Constructor for class com.sun.media.jai.operator.I18N
-
- I18NImpl - Class in com.sun.media.imageioimpl.common
-
Class to simplify use of internationalization message strings.
- I18NImpl() - Constructor for class com.sun.media.imageioimpl.common.I18NImpl
-
- I2IReader - Class in loci.formats.in
-
I2IReader is the file format reader for I2I files.
- I2IReader() - Constructor for class loci.formats.in.I2IReader
-
Constructs a new I2I reader.
- ICacheSource - Interface in loci.formats.cache
-
Interface for cache sources.
- ICacheStrategy - Interface in loci.formats.cache
-
Interface for cache strategies.
- iCbTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- ICC_ENABLED - Static variable in class loci.formats.in.CellSensReader
-
- ICCProfile() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ICCProfile
-
- iccs - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
ICC Profiling specifications
- iceil(int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- icon - Variable in class loci.formats.gui.ImageViewer
-
- icon - Variable in class loci.formats.gui.PreviewPane
-
- ICON_IMAGE_SEQUENCE - Static variable in class loci.formats.in.DicomReader
-
- iconLabel - Variable in class loci.formats.gui.ImageViewer
-
- iconLabel - Variable in class loci.formats.gui.PreviewPane
-
Labels containing thumbnail and dimensional information.
- iconText - Variable in class loci.formats.gui.PreviewPane
-
- iconTip - Variable in class loci.formats.gui.PreviewPane
-
- iCrTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- ICSReader - Class in loci.formats.in
-
ICSReader is the file format reader for ICS (Image Cytometry Standard)
files.
- ICSReader() - Constructor for class loci.formats.in.ICSReader
-
Constructs a new ICSReader.
- ICSWriter - Class in loci.formats.out
-
ICSWriter is the file format writer for ICS files.
- ICSWriter() - Constructor for class loci.formats.out.ICSWriter
-
- ictransf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- id - Variable in class loci.formats.gui.CacheComponent
-
File name that the cache is working with (debugging only).
- id - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- id - Variable in class loci.formats.in.FlexReader.FilterGroup
-
- id - Variable in class loci.formats.in.LeicaHandler.Laser
-
- id - Variable in class loci.formats.in.LeicaReader.Detector
-
- id - Variable in class loci.formats.in.OIRReader.Channel
-
- id - Variable in class loci.formats.in.OIRReader.Detector
-
- id - Variable in class loci.formats.in.OIRReader.Laser
-
- id - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane
-
File containing this plane.
- id - Variable in class loci.formats.in.ZeissCZIReader.Segment
-
- id - Variable in class loci.formats.in.ZeissTIFFReader.Channel
-
- id - Variable in class loci.formats.in.ZeissTIFFReader.Slice
-
- id - Variable in class loci.formats.in.ZeissTIFFReader.Timepoint
-
- id - Variable in class loci.plugins.util.BFVirtualStack
-
- idatCount - Variable in class loci.formats.in.APNGReader
-
- IdDialog - Class in loci.plugins.in
-
Bio-Formats Importer id chooser dialog box.
- IdDialog(ImportProcess) - Constructor for class loci.plugins.in.IdDialog
-
Creates an id chooser dialog for the Bio-Formats Importer.
- idle - Variable in class jj2000.j2k.util.ThreadPool
-
The array of idle threads and the lock for the manipulation of the
idle thread list.
- idleComps - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The queue of idle compressors.
- idLoc - Variable in class loci.plugins.in.ImportProcess
-
- idName - Variable in class loci.plugins.in.ImportProcess
-
- idx - Variable in class jj2000.j2k.codestream.CBlkCoordInfo
-
The code-block horizontal and vertical indexes
- idx - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
The index of this compressor.
- idx1Pos - Variable in class loci.formats.out.AVIWriter
-
- ifd - Variable in class loci.formats.in.LeicaSCNReader.Dimension
-
- ifd - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane
-
IFD number of this plane.
- IFD - Class in loci.formats.tiff
-
Data structure for working with TIFF Image File Directories (IFDs).
- IFD() - Constructor for class loci.formats.tiff.IFD
-
- IFD(IFD) - Constructor for class loci.formats.tiff.IFD
-
- ifdCounts - Variable in class loci.formats.out.OMETiffWriter
-
- IFDList - Class in loci.formats.tiff
-
Data structure for working with a list of TIFF
IFD
s.
- IFDList() - Constructor for class loci.formats.tiff.IFDList
-
- ifdList - Variable in class loci.formats.tiff.TiffParser
-
Cached list of IFDs in the current file.
- IFDMap - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- ifdmap - Variable in class loci.formats.in.SVSReader
-
- ifdOffsets - Variable in class loci.formats.in.FlowSightReader
-
- ifds - Variable in class loci.formats.in.APLReader
-
- ifds - Variable in class loci.formats.in.CellSensReader
-
- ifds - Variable in class loci.formats.in.EPSReader
-
- ifds - Variable in class loci.formats.in.FlexReader.FlexFile
-
- ifds - Variable in class loci.formats.in.FV1000Reader
-
- ifds - Variable in class loci.formats.in.LeicaReader
-
- ifds - Variable in class loci.formats.in.MinimalTiffReader
-
List of IFDs for the current TIFF.
- ifdsList - Variable in class loci.formats.in.ZeissLSMReader
-
- IFDType - Enum in loci.formats.tiff
-
An enumeration of IFD types.
- IFDType(int, int) - Constructor for enum loci.formats.tiff.IFDType
-
Default constructor.
- ifloor(int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- IFormatHandler - Interface in loci.formats
-
Interface for all biological file format readers and writers.
- IFormatReader - Interface in loci.formats
-
Interface for all biological file format readers.
- IFormatWidgets - Interface in loci.plugins.config
-
Interface for defining custom widgets for a specific file format reader.
- IFormatWriter - Interface in loci.formats
-
Interface for all biological file format writers.
- iGCbTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- iGCrTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- ignore - Variable in class loci.plugins.util.SearchableWindow.SearchBox
-
- ignoreCase - Variable in class loci.plugins.util.SearchableWindow.SearchBox
-
- iGYTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- ih - Variable in class loci.formats.in.GIFReader
-
Current image rectangle.
- IHB_LENGTH - Static variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
Length of Image Header Box
- IIOByteArrayOutputStream() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor.IIOByteArrayOutputStream
-
- IIOByteArrayOutputStream(int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor.IIOByteArrayOutputStream
-
- IIOWriteProgressAdapter() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter
-
- iis - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
The input stream where reads from
- iis - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
The ImageInputStream
that is wrapped
- iis - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
The input stream where reads from
- iis - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
The input stream we read from
- iis - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- iis - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
The input stream where reads from
- iis - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
The input stream where reads from
- iis - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
The input stream we read from
- iis - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
The input stream where reads from
- IISRandomAccessIO - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
A wrapper for converting an ImageInputStream
into a
RandomAccessIO
.
- IISRandomAccessIO(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
Creates a RandomAccessIO
instance from the supplied
ImageInputStream
.
- IJStatusEchoer - Class in loci.plugins.util
-
Echoes status messages to the ImageJ status bar.
- IJStatusEchoer() - Constructor for class loci.plugins.util.IJStatusEchoer
-
- IllegalBlockException - Exception in loci.formats
-
- IllegalBlockException() - Constructor for exception loci.formats.IllegalBlockException
-
- IllegalBlockException(String) - Constructor for exception loci.formats.IllegalBlockException
-
- IllegalBlockException(String, Throwable) - Constructor for exception loci.formats.IllegalBlockException
-
- IllegalBlockException(Throwable) - Constructor for exception loci.formats.IllegalBlockException
-
- ILLUM_CHANNEL_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader
-
- ILLUM_CHANNEL_ATTENUATION - Static variable in class loci.formats.in.ZeissLSMReader
-
- ILLUM_CHANNEL_NAME - Static variable in class loci.formats.in.ZeissLSMReader
-
- ILLUM_CHANNEL_WAVELENGTH - Static variable in class loci.formats.in.ZeissLSMReader
-
- ILLUMINATION - Static variable in class loci.formats.FormatTools
-
Identifies the Illumination dimensional type,
representing a dimension consisting of illuminations.
- illumination - Variable in class loci.formats.in.ZeissCZIReader.Channel
-
- IlluminationChannel() - Constructor for class loci.formats.in.ZeissLSMReader.IlluminationChannel
-
- illuminationLabels - Variable in class loci.formats.in.ZeissCZIReader
-
- illuminations - Variable in class loci.formats.in.FV1000Reader
-
- illuminations - Variable in class loci.formats.in.ZeissCZIReader
-
- illuminations - Variable in class loci.formats.in.ZeissLSMReader
-
- illumNA - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- illumSource - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- IM3Reader - Class in loci.formats.in
-
- IM3Reader() - Constructor for class loci.formats.in.IM3Reader
-
Construct an uninitialized reader of .im3 files.
- IM3Reader.BooleanIM3Record - Class in loci.formats.in
-
A record containing boolean values
- IM3Reader.ContainerRecord - Class in loci.formats.in
-
- IM3Reader.FloatIM3Record - Class in loci.formats.in
-
- IM3Reader.IM3Record - Class in loci.formats.in
-
- IM3Reader.IntIM3Record - Class in loci.formats.in
-
- IM3Reader.Spectrum - Class in loci.formats.in
-
- IM3Reader.StringIM3Record - Class in loci.formats.in
-
- IM3Record(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.IM3Record
-
- ImaconHandler() - Constructor for class loci.formats.in.ImaconReader.ImaconHandler
-
- ImaconReader - Class in loci.formats.in
-
ImaconReader is the file format reader for Imacon .fff (TIFF) files.
- ImaconReader() - Constructor for class loci.formats.in.ImaconReader
-
Constructs a new Imacon reader.
- ImaconReader.ImaconHandler - Class in loci.formats.in
-
- image - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The final destination image.
- image - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- IMAGE - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- Image() - Constructor for class loci.formats.in.InCellReader.Image
-
- image - Variable in class loci.formats.in.LegacyQTReader
-
Image containing current frame.
- Image(Attributes) - Constructor for class loci.formats.in.LeicaSCNReader.Image
-
- image - Variable in class loci.formats.in.VeecoReader
-
- IMAGE_BOUNDARY - Static variable in class loci.formats.in.CellSensReader
-
- IMAGE_COLLECTION_PROPERTIES - Static variable in class loci.formats.in.CellSensReader
-
- IMAGE_DESCRIPTION - Static variable in class loci.formats.tiff.IFD
-
- IMAGE_FRAME_VOLUME - Static variable in class loci.formats.in.CellSensReader
-
- IMAGE_HEADER_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
JP2 Header boxes
- IMAGE_LENGTH - Static variable in class loci.formats.tiff.IFD
-
- IMAGE_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- IMAGE_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
- IMAGE_PATH - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- IMAGE_PRO_TAG_1 - Static variable in class loci.formats.in.SEQReader
-
An array of shorts (length 12) with identical values in all of our
samples; assuming this is some sort of format identifier.
- IMAGE_PRO_TAG_2 - Static variable in class loci.formats.in.SEQReader
-
Frame rate.
- IMAGE_PRO_TAG_3 - Static variable in class loci.formats.in.SEQReader
-
- IMAGE_SEPARATOR - Static variable in class loci.formats.in.GIFReader
-
- IMAGE_SOURCE_DATA - Static variable in class loci.formats.in.PhotoshopTiffReader
-
- IMAGE_TYPE_1 - Static variable in class loci.formats.in.OpenlabReader
-
Tag types.
- IMAGE_TYPE_2 - Static variable in class loci.formats.in.OpenlabReader
-
- IMAGE_TYPES - Static variable in class loci.formats.in.DeltavisionReader
-
- IMAGE_WIDTH - Static variable in class loci.formats.tiff.IFD
-
- ImageCollection(Attributes) - Constructor for class loci.formats.in.LeicaSCNReader.ImageCollection
-
- imageComplete(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- imageComplete(ImageWriter) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter
-
- imageComplete(int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- imageCount - Variable in class loci.formats.CoreMetadata
-
Total number of images.
- imageCount - Variable in class loci.formats.in.ZeissCZIReader.Coordinate
-
- imageCreationDate - Variable in class loci.formats.in.MetamorphReader
-
The TIFF's creation date
- imageData - Variable in class jj2000.j2k.image.ImgDataJoiner
-
The list of input ImgData
- imageDataOffset - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
The stream position where the image data starts.
- imageDataOffset - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
The stream position where the image data starts.
- imageDataOffset - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
The stream position where the image data starts.
- imageDepth - Variable in class loci.formats.in.FV1000Reader
-
- ImageDescription() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageDescription
-
- imageDescription - Variable in class loci.formats.in.BaseZeissReader
-
- imageDescription - Variable in class loci.formats.in.FEITiffReader
-
- imageDescriptions - Variable in class loci.formats.in.SlidebookReader
-
- imageDimensions - Variable in class com.sun.media.imageio.stream.RawImageInputStream
-
The image sizes.
- imageDimensions - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- imageFile - Variable in class loci.formats.in.PCORAWReader
-
- imageFiles - Variable in class loci.formats.in.BaseZeissReader
-
- imageFiles - Variable in class loci.formats.in.InCellReader
-
- imageFiles - Variable in class loci.formats.in.IPWReader
-
List of embedded image file names (one per image plane).
- imageFiles - Variable in class loci.formats.in.PCIReader
-
- imageFolder - Variable in class loci.formats.in.CellVoyagerReader
-
- imageHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- imageHeight - Variable in class loci.formats.in.InCellReader
-
- imageHeight - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- imageIFD(int) - Method in class loci.formats.in.LeicaSCNReader
-
- imageIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
The index of the image being written.
- imageIndex - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The image index in this stream.
- imageIndex - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- imageIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- ImageInputStreamWrapper - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is designed to wrap a ImageInputStream into
a InputStream
.
- ImageInputStreamWrapper(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
Constructs an ImageInputStreamWrapper
from the provided
ImageInputStream
.
- ImageIOReader - Class in loci.formats.in
-
ImageIOReader is the superclass for file format readers
that use the javax.imageio package.
- ImageIOReader(String, String) - Constructor for class loci.formats.in.ImageIOReader
-
Constructs a new ImageIOReader.
- ImageIOReader(String, String[]) - Constructor for class loci.formats.in.ImageIOReader
-
Constructs a new ImageIOReader.
- ImageIOWriter - Class in loci.formats.out
-
ImageIOWriter is the superclass for file format writers that use the
javax.imageio library.
- ImageIOWriter(String, String, String) - Constructor for class loci.formats.out.ImageIOWriter
-
Constructs an ImageIO-based writer with the given name, default suffix
and output type (e.g., png, jpeg).
- ImageIOWriter(String, String[], String) - Constructor for class loci.formats.out.ImageIOWriter
-
Constructs an ImageIO-based writer with the given name, default suffixes
and output type (e.g., png, jpeg).
- imageIsContiguous(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Returns whether the image has contiguous data across rows.
- IMAGEJ_MSG - Static variable in class loci.plugins.util.LibraryChecker
-
Message to be displayed if ImageJ is too old for Bio-Formats plugins.
- IMAGEJ_TAG - Static variable in class loci.formats.in.TiffReader
-
- IMAGEJ_VERSION - Static variable in class loci.plugins.util.LibraryChecker
-
Minimum version of ImageJ necessary for Bio-Formats plugins.
- imageLeftPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- ImageLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageLength
-
- imageLocations - Variable in class loci.formats.out.OMETiffWriter
-
- imageMap - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- imageMetadata - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Image metadata, valid for the imageMetadataIndex only.
- imageMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- imageMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- imageMetadataIndex - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
The image index for the cached metadata.
- imageName - Variable in class loci.formats.in.BioRadSCNReader
-
- imageName - Variable in class loci.formats.in.FEITiffReader
-
- imageName - Variable in class loci.formats.in.ImaconReader
-
- imageName - Variable in class loci.formats.in.MetamorphHandler
-
- imageName - Variable in class loci.formats.in.MetamorphReader
-
The TIFF's name
- imageName - Variable in class loci.formats.in.SISReader
-
- imageName - Variable in class loci.formats.in.ZeissCZIReader
-
- imageNames - Variable in class loci.formats.in.LIFReader
-
- imageNames - Variable in class loci.formats.in.TillVisionReader
-
- imageNames - Variable in class loci.formats.in.ZeissLSMReader
-
- imageNumber - Variable in class loci.formats.in.APNGReader.PNGInputStream
-
- imageNumEnd - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- imageNumStart - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- imageOffset - Variable in class loci.formats.in.IvisionReader
-
- imageOffsets - Variable in class com.sun.media.imageio.stream.RawImageInputStream
-
The position of the first sample for each image.
- ImagePlusReader - Class in loci.plugins.in
-
A high-level reader for ImagePlus
objects.
- ImagePlusReader() - Constructor for class loci.plugins.in.ImagePlusReader
-
Constructs an ImagePlusReader with the default options.
- ImagePlusReader(ImportProcess) - Constructor for class loci.plugins.in.ImagePlusReader
-
Constructs an ImagePlusReader with the
given complete import preparation process.
- ImageProcessorReader - Class in loci.plugins.util
-
A low-level reader for ImageProcessor
objects.
- ImageProcessorReader() - Constructor for class loci.plugins.util.ImageProcessorReader
-
Constructs an ImageProcessorReader around a new image reader.
- ImageProcessorReader(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorReader
-
Constructs an ImageProcessorReader with the given reader.
- ImageProcessorSource - Class in loci.plugins.util
-
Retrieves ImageJ image processors from an image reader.
- ImageProcessorSource(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorSource
-
- imageProgress(ImageReader, float) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- imageProgress(ImageWriter, float) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter
-
- ImageReader - Class in loci.formats
-
ImageReader is the master file format reader for all supported formats.
- ImageReader() - Constructor for class loci.formats.ImageReader
-
Constructs a new ImageReader with the default
list of reader classes from readers.txt.
- ImageReader(ClassList<IFormatReader>) - Constructor for class loci.formats.ImageReader
-
Constructs a new ImageReader from the given list of reader classes.
- imageReader - Variable in class loci.plugins.in.ImportProcess
-
- imageReadParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- imageROIs - Variable in class loci.formats.in.LIFReader
-
- imageRX - Variable in class loci.formats.in.SDTInfo
-
- imageRY - Variable in class loci.formats.in.SDTInfo
-
- images - Variable in class loci.formats.gui.ImageViewer
-
- images - Variable in class loci.formats.in.GIFReader
-
- IMAGES - Static variable in class loci.formats.in.LeicaReader
-
- images - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection
-
- imageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- imageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- imagesPerFile - Variable in class loci.formats.FileStitcher.ExternalSeries
-
- imagesPerFile - Variable in class loci.formats.in.DicomReader
-
- imageStarted(ImageReader, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- imageStarted(ImageWriter, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter
-
- imageStartPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- imageThumbnail - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- ImageTools - Class in loci.formats
-
A utility class with convenience methods for manipulating images
in primitive array form.
- ImageTools() - Constructor for class loci.formats.ImageTools
-
- imageTopPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- imageType - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- imageType - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- imageType - Variable in class loci.formats.in.DicomReader
-
- imageTypeMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- ImageUniqueID() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ImageUniqueID
-
- ImageUtil - Class in com.sun.media.imageioimpl.common
-
- ImageUtil() - Constructor for class com.sun.media.imageioimpl.common.ImageUtil
-
- ImageViewer - Class in loci.formats.gui
-
ImageViewer is a simple viewer/converter
for the Bio-Formats image formats.
- ImageViewer() - Constructor for class loci.formats.gui.ImageViewer
-
Constructs an image viewer.
- ImageViewer(boolean) - Constructor for class loci.formats.gui.ImageViewer
-
Constructs an image viewer.
- ImageWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ImageWidth
-
- imageWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- imageWidth - Variable in class loci.formats.in.InCellReader
-
- imageWidth - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- ImageWriter - Class in loci.formats
-
ImageWriter is the master file format writer for all supported formats.
- ImageWriter() - Constructor for class loci.formats.ImageWriter
-
Constructs a new ImageWriter with the default
list of writer classes from writers.txt.
- ImageWriter(ClassList<IFormatWriter>) - Constructor for class loci.formats.ImageWriter
-
Constructs a new ImageWriter from the given list of writer classes.
- imageX - Variable in class loci.formats.in.SDTInfo
-
4 subsequent fields valid only for Camera mode
or FIFO_IMAGE mode.
- imageY - Variable in class loci.formats.in.SDTInfo
-
- ImagicReader - Class in loci.formats.in
-
ImagicReader is the file format reader for IMAGIC files.
- ImagicReader() - Constructor for class loci.formats.in.ImagicReader
-
Constructs a new IMAGIC reader.
- IMARIS_MAGIC_BYTES - Static variable in class loci.formats.in.ImarisReader
-
Magic number; present in all files.
- ImarisHDFReader - Class in loci.formats.in
-
Reader for Bitplane Imaris 5.5 (HDF) files.
- ImarisHDFReader() - Constructor for class loci.formats.in.ImarisHDFReader
-
Constructs a new Imaris HDF reader.
- ImarisReader - Class in loci.formats.in
-
ImarisReader is the file format reader for Bitplane Imaris files.
- ImarisReader() - Constructor for class loci.formats.in.ImarisReader
-
Constructs a new Imaris reader.
- ImarisTiffReader - Class in loci.formats.in
-
ImarisTiffReader is the file format reader for
Bitplane Imaris 3 files (TIFF variant).
- ImarisTiffReader() - Constructor for class loci.formats.in.ImarisTiffReader
-
Constructs a new Imaris TIFF reader.
- IMB_C - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- IMB_IPR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- IMB_UnkC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- IMB_VERS - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
Image Header Box Fields
- IMetadata - Interface in loci.formats.meta
-
- IMetadataConfigurable - Interface in loci.formats
-
- img - Variable in class loci.formats.in.ImageIOReader
-
- img - Variable in class loci.formats.tools.AsciiImage
-
- ImgData - Interface in jj2000.j2k.image
-
This interface defines methods to access image attributes (width, height,
number of components, etc.).
- ImgDataAdapter - Class in jj2000.j2k.image
-
This class provides a default implementation of the methods in the
'ImgData' interface.
- ImgDataAdapter(ImgData) - Constructor for class jj2000.j2k.image.ImgDataAdapter
-
Instantiates the ImgDataAdapter object specifying the ImgData source.
- ImgDataConverter - Class in jj2000.j2k.image
-
This class is responsible of all data type conversions.
- ImgDataConverter(BlkImgDataSrc, int) - Constructor for class jj2000.j2k.image.ImgDataConverter
-
Constructs a new ImgDataConverter object that operates on the specified
source of image data.
- ImgDataConverter(BlkImgDataSrc) - Constructor for class jj2000.j2k.image.ImgDataConverter
-
Constructs a new ImgDataConverter object that operates on the specified
source of image data.
- ImgDataJoiner - Class in jj2000.j2k.image
-
This class implements the ImgData interface and allows to obtain data from
different sources.
- ImgDataJoiner(BlkImgDataSrc[], int[]) - Constructor for class jj2000.j2k.image.ImgDataJoiner
-
Class constructor.
- imgdatasrc - Variable in class jj2000.j2k.image.ImgDataAdapter
-
The ImgData source
- imgH - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The image width on the hi-res reference grid
- ImgReader - Class in jj2000.j2k.image.input
-
This is the generic interface to be implemented by all image file (or other
resource) readers for different image file formats.
- ImgReader() - Constructor for class jj2000.j2k.image.input.ImgReader
-
- ImgReaderPGM - Class in jj2000.j2k.image.input
-
This class implements the ImgData interface for reading 8 bit unsigned data
from a binary PGM file.
- ImgReaderPGM(File) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM
-
Creates a new PGM file reader from the specified file.
- ImgReaderPGM(String) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM
-
Creates a new PGM file reader from the specified file name.
- ImgReaderPGM(RandomAccessFile) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM
-
Creates a new PGM file reader from the specified RandomAccessFile
object.
- imgsrc - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
- imgW - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The image width on the hi-res reference grid
- IMinMaxStore - Interface in loci.formats.meta
-
Interface for consumers of minima and maxima pixel intensities across a
given wavelength.
- immersion - Variable in class loci.formats.in.ND2Handler
-
- immersion - Variable in class loci.formats.in.NikonTiffReader
-
- immersion - Variable in class loci.formats.in.OIRReader.Objective
-
- immersion - Variable in class loci.formats.in.SimplePCITiffReader
-
- immersion - Variable in class loci.formats.in.ZeissLSMReader.Recording
-
- immersions - Variable in class loci.formats.in.LIFReader
-
- IMODReader - Class in loci.formats.in
-
Reader for IMOD binary files.
- IMODReader() - Constructor for class loci.formats.in.IMODReader
-
Constructs a new IMOD reader.
- IMODSTAMP_OFFSET - Static variable in class loci.formats.in.MRCReader
-
- imp - Variable in class loci.plugins.out.Exporter
-
Current stack.
- imp - Variable in class loci.plugins.Slicer
-
Current image stack.
- IMPLICIT_VR - Static variable in class loci.formats.in.DicomReader
-
- importData(JComponent, Transferable) - Method in class loci.plugins.shortcut.ShortcutTransferHandler
-
- Importer - Class in loci.plugins.in
-
Core logic for the Bio-Formats Importer ImageJ plugin.
- Importer(LociImporter) - Constructor for class loci.plugins.in.Importer
-
- ImporterDialog - Class in loci.plugins.in
-
Abstract superclass of importer dialogs.
- ImporterDialog(ImportProcess) - Constructor for class loci.plugins.in.ImporterDialog
-
- ImporterMetadata - Class in loci.plugins.in
-
Helper class for storing original metadata key/value pairs.
- ImporterMetadata(IFormatReader, ImportProcess, boolean) - Constructor for class loci.plugins.in.ImporterMetadata
-
- ImporterOptions - Class in loci.plugins.in
-
Helper class for managing Bio-Formats Importer options.
- ImporterOptions() - Constructor for class loci.plugins.in.ImporterOptions
-
- ImporterPrompter - Class in loci.plugins.in
-
Helper class for presenting the user with dialog boxes
for configuring importer options.
- ImporterPrompter(ImportProcess) - Constructor for class loci.plugins.in.ImporterPrompter
-
- ImportProcess - Class in loci.plugins.in
-
Manages the import preparation process.
- ImportProcess() - Constructor for class loci.plugins.in.ImportProcess
-
- ImportProcess(ImporterOptions) - Constructor for class loci.plugins.in.ImportProcess
-
- ImportStep - Enum in loci.plugins.in
-
An enumeration of the steps in the import preparation process.
- ImportStep(int, String) - Constructor for enum loci.plugins.in.ImportStep
-
- IMPROVISION_MAGIC_STRING - Static variable in class loci.formats.in.ImprovisionTiffReader
-
- ImprovisionTiffReader - Class in loci.formats.in
-
ImprovisionTiffReader is the file format reader for
Improvision TIFF files.
- ImprovisionTiffReader() - Constructor for class loci.formats.in.ImprovisionTiffReader
-
- ImspectorReader - Class in loci.formats.in
-
ImspectorReader is the file format reader for Imspector .msr files.
- ImspectorReader() - Constructor for class loci.formats.in.ImspectorReader
-
Constructs a new Imspector reader.
- in - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- in - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
The RandomAccessIO where to get data from
- in - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
The byte based source of data
- in - Variable in class jj2000.j2k.entropy.decoder.ByteToBitInput
-
The byte based input
- in - Variable in class jj2000.j2k.entropy.decoder.MQDecoder
-
The ByteInputBuffer used to read the compressed bit stream.
- in - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
The random access from which the file format boxes are read
- in - Variable in class jj2000.j2k.image.input.ImgReaderPGM
-
Where to read the data from
- in - Variable in class loci.formats.codec.JPEGTileDecoder
-
- in - Variable in class loci.formats.FormatReader
-
Current file.
- in - Variable in class loci.formats.gui.ImageViewer
-
- in - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Stream that we're parsing metadata from.
- in - Variable in class loci.formats.in.ZeissTIFFReader.Plane
-
- in - Variable in class loci.formats.out.TiffWriter
-
Input stream to use when overwriting data.
- in - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- in - Variable in class loci.formats.tiff.TiffParser
-
Input source from which to parse TIFF data.
- in - Variable in class loci.formats.tools.AmiraParameters
-
- inblk - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer
-
The 'DataBlkInt' object used to request data, used when output data is
not int
- inc - Variable in class jj2000.j2k.util.ISRandomAccessIO
-
- inCache - Variable in class loci.formats.cache.Cache
-
Whether each position is currently supposed to be cached.
- incCompImageSize(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- InCell3000Reader - Class in loci.formats.in
-
InCell3000Reader is the file format reader for InCell 3000.
- InCell3000Reader() - Constructor for class loci.formats.in.InCell3000Reader
-
Constructs a new InCell 3000 reader.
- INCELL_MAGIC_STRING - Static variable in class loci.formats.in.InCellReader
-
- InCellHandler(MetadataStore) - Constructor for class loci.formats.in.InCellReader.InCellHandler
-
- InCellReader - Class in loci.formats.in
-
InCellReader is the file format reader for InCell 1000/2000 datasets.
- InCellReader() - Constructor for class loci.formats.in.InCellReader
-
Constructs a new InCell 1000/2000 reader.
- InCellReader.Image - Class in loci.formats.in
-
- InCellReader.InCellHandler - Class in loci.formats.in
-
SAX handler for parsing XML.
- InCellReader.MinimalInCellHandler - Class in loci.formats.in
-
- INCLUDE_ATTACHMENTS_DEFAULT - Static variable in class loci.formats.in.ZeissCZIReader
-
- INCLUDE_ATTACHMENTS_KEY - Static variable in class loci.formats.in.ZeissCZIReader
-
- includeC - Variable in class loci.formats.gui.DataConverter
-
- includeCZIAttachments() - Static method in class loci.plugins.util.LociPrefs
-
- includeT - Variable in class loci.formats.gui.DataConverter
-
- includeZ - Variable in class loci.formats.gui.DataConverter
-
- incr - Variable in class loci.formats.in.SDTInfo
-
- index - Variable in class loci.formats.cache.CacheEvent
-
Relevant index to the event, if any.
- index - Variable in class loci.formats.codec.BitWriter
-
Deprecated.
Byte index into the buffer.
- index - Variable in class loci.formats.in.BaseZeissReader.Tag
-
- index - Variable in class loci.formats.in.CellVoyagerReader.AreaInfo
-
- index - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo
-
- index - Variable in class loci.formats.in.LeicaHandler.Laser
-
- index - Variable in class loci.formats.in.LeicaReader.Detector
-
- Index(int[]) - Constructor for class loci.formats.in.MicromanagerReader.Index
-
- index - Variable in class loci.formats.in.PrairieMetadata.Frame
-
index
of this <Frame>
.
- index - Variable in class loci.formats.in.ZeissTIFFHandler.Tag
-
- index - Variable in class loci.plugins.in.ThumbLoader.SeriesInfo
-
- index - Variable in class loci.plugins.util.SearchableWindow
-
- Index16ColorModel - Class in loci.formats.gui
-
ColorModel that handles 16 bits per channel lookup tables.
- Index16ColorModel(int, int, short[][], boolean) - Constructor for class loci.formats.gui.Index16ColorModel
-
- index_ - Variable in class com.sun.media.imageioimpl.common.BitFile
-
- indexed - Variable in class loci.formats.CoreMetadata
-
Indicates whether or not the images are stored as indexed color.
- INDEXED - Static variable in class loci.formats.in.APNGReader
-
- indexedAsRGB - Variable in class loci.formats.FormatReader
-
Whether or not MetadataStore sets C = 3 for indexed color images.
- indexedToRGB(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools
-
Converts an indexed color BufferedImage to an RGB BufferedImage.
- indexedToRGB(byte[][], byte[]) - Static method in class loci.formats.ImageTools
-
Converts a LUT and an array of indices into an array of RGB tuples.
- indexedToRGB(short[][], byte[], boolean) - Static method in class loci.formats.ImageTools
-
Converts a LUT and an array of indices into an array of RGB tuples.
- indexIntoPlanes - Variable in class loci.formats.in.ZeissCZIReader
-
- indexMax - Variable in class loci.formats.in.PrairieMetadata.Sequence
-
Maximum index value.
- indexMin - Variable in class loci.formats.in.PrairieMetadata.Sequence
-
Minimum index value.
- indexToValue - Variable in class loci.formats.in.FakeReader
-
For indexed color, mapping from indices to values and vice versa.
- inDimensionProperties - Variable in class loci.formats.in.CellSensReader
-
- INDIVIDUAL_JARS - Static variable in class loci.formats.UpgradeChecker
-
Names of the individual JARs.
- infblk - Variable in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
The 'CBlkWTDataFloat' object used to request data, used when
quantizing floating-point data.
- infFile - Variable in class loci.formats.in.FujiReader
-
- infFiles - Variable in class loci.formats.in.TillVisionReader
-
- inflater - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor
-
- inflater - Variable in class loci.formats.in.OBFReader
-
- INFO - Static variable in interface jj2000.j2k.util.MsgLogger
-
Severity of message.
- info - Variable in class loci.formats.in.GatanReader
-
- info - Variable in class loci.formats.in.OMETiffReader
-
Mapping from series and plane numbers to files and IFD entries.
- info - Variable in class loci.formats.in.SDTInfo
-
- info - Variable in class loci.formats.in.SDTReader
-
Object containing SDT header information.
- info - Variable in class loci.plugins.prefs.Option
-
Documentation about the option, in HTML.
- INFO_DEFAULT - Static variable in class loci.plugins.in.MainDialog
-
Initial message to display in help text box.
- INFO_TABLE - Static variable in class loci.formats.in.LiFlimReader
-
- infoLength - Variable in class loci.formats.in.SDTInfo
-
Length of the info part.
- infoOffs - Variable in class loci.formats.in.SDTInfo
-
Offset of the info part which contains general text
information (Title, date, time, contents etc.).
- infoPane - Variable in class loci.plugins.in.MainDialog
-
- infoSrc - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The source object
- infoTable - Variable in class loci.plugins.in.MainDialog
-
- ini - Variable in class loci.formats.in.LiFlimReader
-
Parsed configuration data.
- INI_DEFAULT - Static variable in class loci.plugins.prefs.Option
-
INI key indicating option's default value.
- INI_INFO - Static variable in class loci.plugins.prefs.Option
-
INI key indicating option's info.
- INI_KEY - Static variable in class loci.plugins.prefs.Option
-
INI key indicating option's key.
- INI_LABEL - Static variable in class loci.plugins.prefs.Option
-
INI key indicating option's label.
- INI_POSSIBLE - Static variable in class loci.plugins.prefs.StringOption
-
INI key indicating option's possible values.
- INI_SAVE - Static variable in class loci.plugins.prefs.Option
-
INI key indicating whether option should be saved to prefs file.
- INI_TYPE - Static variable in class loci.plugins.prefs.OptionsList
-
INI key indicating option's type.
- iniFile - Variable in class loci.formats.in.FakeReader
-
Properties companion file which can be associated with this fake file
- init(int, int) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Initializes the variables of this class, given the dimensions
at the base level (leaf level).
- init() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
Initializes the state of the MQ coder, without modifying the current
context states.
- init() - Method in class loci.formats.services.NetCDFServiceImpl
-
- init() - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
- init() - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
- init() - Method in class org.libjpegturbo.turbojpeg.TJTransformer
-
- INIT_EL_COPYING - Static variable in class jj2000.j2k.util.ArrayUtil
-
The number of elements to copy initially in an optimized array copy
- INIT_LBLOCK - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
Initial value of the state variable associated with code-block
length.
- INIT_LBLOCK - Static variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The initial value for the lblock
- initAlternateMetadata() - Method in class loci.formats.in.FluoviewReader
-
- initAlternateMetadataStore() - Method in class loci.formats.in.FluoviewReader
-
- initBitBuf() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Initialize bit buffer machinery.
- initBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- initChilds() - Method in class jj2000.j2k.wavelet.Subband
-
Initializes the childs of this node with the correct values.
- initClass() - Method in class loci.formats.gui.LegacyQTTools
-
Initializes the class.
- initCoreMetadata(int, int) - Method in class loci.formats.in.LeicaSCNReader
-
- initCoreMetadata() - Method in class loci.formats.in.LiFlimReader
-
- initData(Node, int[], int[], Object[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
- initDecompressor() - Method in class loci.formats.in.AmiraReader.HxZip
-
- initExtraMetadata() - Method in class loci.formats.in.DeltavisionReader
-
- initFile(String) - Method in class loci.formats.FileStitcher
-
Initializes the given file or file pattern.
- initFile(String) - Method in class loci.formats.FormatReader
-
Initializes the given file (parsing header information, etc.).
- initFile(String) - Method in class loci.formats.in.AFIReader
-
- initFile(String) - Method in class loci.formats.in.AIMReader
-
- initFile(String) - Method in class loci.formats.in.AliconaReader
-
- initFile(String) - Method in class loci.formats.in.AmiraReader
-
- initFile(String) - Method in class loci.formats.in.AnalyzeReader
-
- initFile(String) - Method in class loci.formats.in.APLReader
-
- initFile(String) - Method in class loci.formats.in.APNGReader
-
- initFile(String) - Method in class loci.formats.in.ARFReader
-
- initFile(String) - Method in class loci.formats.in.AVIReader
-
- initFile(String) - Method in class loci.formats.in.BaseTiffReader
-
- initFile(String) - Method in class loci.formats.in.BDReader
-
- initFile(String) - Method in class loci.formats.in.BioRadGelReader
-
- initFile(String) - Method in class loci.formats.in.BioRadReader
-
- initFile(String) - Method in class loci.formats.in.BioRadSCNReader
-
- initFile(String) - Method in class loci.formats.in.BMPReader
-
- initFile(String) - Method in class loci.formats.in.BrukerReader
-
- initFile(String) - Method in class loci.formats.in.BurleighReader
-
- initFile(String) - Method in class loci.formats.in.CanonRawReader
-
- initFile(String) - Method in class loci.formats.in.CellH5Reader
-
- initFile(String) - Method in class loci.formats.in.CellomicsReader
-
- initFile(String) - Method in class loci.formats.in.CellSensReader
-
- initFile(String) - Method in class loci.formats.in.CellVoyagerReader
-
- initFile(String) - Method in class loci.formats.in.CellWorxReader
-
- initFile(String) - Method in class loci.formats.in.ColumbusReader
-
- initFile(String) - Method in class loci.formats.in.DeltavisionReader
-
- initFile(String) - Method in class loci.formats.in.DicomReader
-
- initFile(String) - Method in class loci.formats.in.DNGReader
-
- initFile(String) - Method in class loci.formats.in.Ecat7Reader
-
- initFile(String) - Method in class loci.formats.in.EPSReader
-
- initFile(String) - Method in class loci.formats.in.FakeReader
-
- initFile(String) - Method in class loci.formats.in.FEIReader
-
- initFile(String) - Method in class loci.formats.in.FilePatternReader
-
- initFile(String) - Method in class loci.formats.in.FitsReader
-
- initFile(String) - Method in class loci.formats.in.FlexReader
-
- initFile(String) - Method in class loci.formats.in.FlowSightReader
-
- initFile(String) - Method in class loci.formats.in.FujiReader
-
- initFile(String) - Method in class loci.formats.in.FV1000Reader
-
- initFile(String) - Method in class loci.formats.in.GatanDM2Reader
-
- initFile(String) - Method in class loci.formats.in.GatanReader
-
- initFile(String) - Method in class loci.formats.in.GIFReader
-
- initFile(String) - Method in class loci.formats.in.HamamatsuVMSReader
-
- initFile(String) - Method in class loci.formats.in.HISReader
-
- initFile(String) - Method in class loci.formats.in.HitachiReader
-
- initFile(String) - Method in class loci.formats.in.HRDGDFReader
-
- initFile(String) - Method in class loci.formats.in.I2IReader
-
- initFile(String) - Method in class loci.formats.in.ICSReader
-
- initFile(String) - Method in class loci.formats.in.IM3Reader
-
- initFile(String) - Method in class loci.formats.in.ImageIOReader
-
- initFile(String) - Method in class loci.formats.in.ImagicReader
-
- initFile(String) - Method in class loci.formats.in.ImarisHDFReader
-
- initFile(String) - Method in class loci.formats.in.ImarisReader
-
- initFile(String) - Method in class loci.formats.in.ImarisTiffReader
-
- initFile(String) - Method in class loci.formats.in.IMODReader
-
- initFile(String) - Method in class loci.formats.in.ImspectorReader
-
- initFile(String) - Method in class loci.formats.in.InCell3000Reader
-
- initFile(String) - Method in class loci.formats.in.InCellReader
-
- initFile(String) - Method in class loci.formats.in.INRReader
-
- initFile(String) - Method in class loci.formats.in.InveonReader
-
- initFile(String) - Method in class loci.formats.in.IPLabReader
-
- initFile(String) - Method in class loci.formats.in.IPWReader
-
- initFile(String) - Method in class loci.formats.in.IvisionReader
-
- initFile(String) - Method in class loci.formats.in.JEOLReader
-
- initFile(String) - Method in class loci.formats.in.JPEG2000Reader
-
- initFile(String) - Method in class loci.formats.in.JPEGReader.DefaultJPEGReader
-
- initFile(String) - Method in class loci.formats.in.JPXReader
-
- initFile(String) - Method in class loci.formats.in.KhorosReader
-
- initFile(String) - Method in class loci.formats.in.KodakReader
-
- initFile(String) - Method in class loci.formats.in.L2DReader
-
- initFile(String) - Method in class loci.formats.in.LegacyND2Reader
-
- initFile(String) - Method in class loci.formats.in.LegacyQTReader
-
- initFile(String) - Method in class loci.formats.in.LeicaReader
-
- initFile(String) - Method in class loci.formats.in.LiFlimReader
-
- initFile(String) - Method in class loci.formats.in.LIFReader
-
- initFile(String) - Method in class loci.formats.in.LIMReader
-
- initFile(String) - Method in class loci.formats.in.MetamorphReader
-
- initFile(String) - Method in class loci.formats.in.MetamorphTiffReader
-
- initFile(String) - Method in class loci.formats.in.MIASReader
-
- initFile(String) - Method in class loci.formats.in.MicromanagerReader
-
- initFile(String) - Method in class loci.formats.in.MINCReader
-
- initFile(String) - Method in class loci.formats.in.MinimalTiffReader
-
- initFile(String) - Method in class loci.formats.in.MNGReader
-
- initFile(String) - Method in class loci.formats.in.MolecularImagingReader
-
- initFile(String) - Method in class loci.formats.in.MRCReader
-
- initFile(String) - Method in class loci.formats.in.MRWReader
-
- initFile(String) - Method in class loci.formats.in.NAFReader
-
- initFile(String) - Method in class loci.formats.in.NativeND2Reader
-
- initFile(String) - Method in class loci.formats.in.NativeQTReader
-
- initFile(String) - Method in class loci.formats.in.NDPIReader
-
- initFile(String) - Method in class loci.formats.in.NDPISReader
-
- initFile(String) - Method in class loci.formats.in.NiftiReader
-
- initFile(String) - Method in class loci.formats.in.NikonReader
-
- initFile(String) - Method in class loci.formats.in.NRRDReader
-
- initFile(String) - Method in class loci.formats.in.OBFReader
-
- initFile(String) - Method in class loci.formats.in.OIRReader
-
- initFile(String) - Method in class loci.formats.in.OMETiffReader
-
- initFile(String) - Method in class loci.formats.in.OMEXMLReader
-
- initFile(String) - Method in class loci.formats.in.OpenlabRawReader
-
- initFile(String) - Method in class loci.formats.in.OpenlabReader
-
- initFile(String) - Method in class loci.formats.in.OperettaReader
-
- initFile(String) - Method in class loci.formats.in.OxfordInstrumentsReader
-
- initFile(String) - Method in class loci.formats.in.PCIReader
-
- initFile(String) - Method in class loci.formats.in.PCORAWReader
-
- initFile(String) - Method in class loci.formats.in.PCXReader
-
- initFile(String) - Method in class loci.formats.in.PDSReader
-
- initFile(String) - Method in class loci.formats.in.PerkinElmerReader
-
- initFile(String) - Method in class loci.formats.in.PGMReader
-
- initFile(String) - Method in class loci.formats.in.PhotoshopTiffReader
-
- initFile(String) - Method in class loci.formats.in.PictReader
-
- initFile(String) - Method in class loci.formats.in.PovrayReader
-
- initFile(String) - Method in class loci.formats.in.PQBinReader
-
- initFile(String) - Method in class loci.formats.in.PrairieReader
-
- initFile(String) - Method in class loci.formats.in.PSDReader
-
- initFile(String) - Method in class loci.formats.in.QuesantReader
-
- initFile(String) - Method in class loci.formats.in.RHKReader
-
- initFile(String) - Method in class loci.formats.in.SBIGReader
-
- initFile(String) - Method in class loci.formats.in.ScanrReader
-
- initFile(String) - Method in class loci.formats.in.ScreenReader
-
- initFile(String) - Method in class loci.formats.in.SDTReader
-
- initFile(String) - Method in class loci.formats.in.SeikoReader
-
- initFile(String) - Method in class loci.formats.in.SIFReader
-
- initFile(String) - Method in class loci.formats.in.SlidebookReader
-
- initFile(String) - Method in class loci.formats.in.SMCameraReader
-
- initFile(String) - Method in class loci.formats.in.SPCReader
-
- initFile(String) - Method in class loci.formats.in.SPEReader
-
- initFile(String) - Method in class loci.formats.in.SpiderReader
-
- initFile(String) - Method in class loci.formats.in.TargaReader
-
- initFile(String) - Method in class loci.formats.in.TCSReader
-
- initFile(String) - Method in class loci.formats.in.TextReader
-
- initFile(String) - Method in class loci.formats.in.TiffJAIReader
-
- initFile(String) - Method in class loci.formats.in.TileJPEGReader
-
- initFile(String) - Method in class loci.formats.in.TillVisionReader
-
- initFile(String) - Method in class loci.formats.in.TopometrixReader
-
- initFile(String) - Method in class loci.formats.in.TrestleReader
-
- initFile(String) - Method in class loci.formats.in.UBMReader
-
- initFile(String) - Method in class loci.formats.in.UnisokuReader
-
- initFile(String) - Method in class loci.formats.in.VarianFDFReader
-
- initFile(String) - Method in class loci.formats.in.VeecoReader
-
- initFile(String) - Method in class loci.formats.in.VGSAMReader
-
- initFile(String) - Method in class loci.formats.in.VisitechReader
-
- initFile(String) - Method in class loci.formats.in.VolocityClippingReader
-
- initFile(String) - Method in class loci.formats.in.VolocityReader
-
- initFile(String) - Method in class loci.formats.in.WATOPReader
-
- initFile(String) - Method in class loci.formats.in.WlzReader
-
- initFile(String) - Method in class loci.formats.in.ZeissCZIReader
-
- initFile(String) - Method in class loci.formats.in.ZeissLMSReader
-
- initFile(String) - Method in class loci.formats.in.ZeissLSMReader
-
- initFile(String) - Method in class loci.formats.in.ZeissTIFFReader
-
- initFile(String) - Method in class loci.formats.in.ZeissZVIReader
-
- initFile(String) - Method in class loci.formats.in.ZipReader
-
- initFileMain(String) - Method in class loci.formats.in.BaseZeissReader
-
- initFlexFile(String) - Method in class loci.formats.in.FlexReader
-
- initForwICT() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Initialize some variables used with ICT.
- initForwRCT() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Initialize some variables used with RCT.
- initialize(ColorModel, SampleModel, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- initialize(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- initialize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- initialize(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- initialize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- initialize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Initializes the layers array.
- initialize() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
Initializes the rate allocation points, taking into account header
overhead and such.
- initialize() - Method in class loci.formats.codec.JPEG2000Codec
-
Initializes the JAI ImageIO dependency service.
- initialize(String, int) - Method in class loci.formats.codec.JPEGTileDecoder
-
- initialize(RandomAccessInputStream, int) - Method in class loci.formats.codec.JPEGTileDecoder
-
- initialize(RandomAccessInputStream, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder
-
- initialize() - Method in class loci.formats.codec.JPEGXRCodec
-
Initializes the JPEG-XR dependency service.
- initialize() - Method in class loci.formats.codec.LuraWaveCodec
-
Initializes the LuraWave dependency service.
- initialize(String) - Method in interface loci.formats.services.EXIFService
-
- initialize(String) - Method in class loci.formats.services.EXIFServiceImpl
-
- initialize(RandomAccessInputStream, int, int) - Method in interface loci.formats.services.JPEGTurboService
-
- initialize(RandomAccessInputStream, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl
-
- initialize(InputStream) - Method in interface loci.formats.services.LuraWaveService
-
Wraps lwfDecoder.lwfDecoder(InputStream, String, String)
.
- initialize(InputStream) - Method in class loci.formats.services.LuraWaveServiceImpl
-
- initialize(String) - Method in interface loci.formats.services.MDBService
-
Prepare the given .mdb file for reading.
- initialize(String) - Method in class loci.formats.services.MDBServiceImpl
-
- initialize(String) - Method in interface loci.formats.services.MetakitService
-
- initialize(RandomAccessInputStream) - Method in interface loci.formats.services.MetakitService
-
- initialize(String) - Method in class loci.formats.services.MetakitServiceImpl
-
- initialize(RandomAccessInputStream) - Method in class loci.formats.services.MetakitServiceImpl
-
- initialize(String) - Method in interface loci.formats.services.POIService
-
Construct a new POI filesystem around the given file.
- initialize(RandomAccessInputStream) - Method in interface loci.formats.services.POIService
-
Construct a new POI filesystem around the given stream.
- initialize(String) - Method in class loci.formats.services.POIServiceImpl
-
- initialize(RandomAccessInputStream) - Method in class loci.formats.services.POIServiceImpl
-
- initializeColors() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.COLORS notification.
- initializeCrop() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.CROP notification.
- initialized - Variable in class loci.formats.FormatWriter
-
Whether each plane in each series of the current file has been
prepped for writing.
- initialized - Variable in class loci.formats.gui.LegacyQTTools
-
Flag indicating this class has been initialized.
- initializedFile - Variable in class loci.formats.in.HamamatsuVMSReader
-
- initializeDimOrder() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.DIM_ORDER notification.
- initializedPlane - Variable in class loci.formats.in.HamamatsuVMSReader
-
- initializedPlane - Variable in class loci.formats.in.NDPIReader
-
- initializedSeries - Variable in class loci.formats.in.HamamatsuVMSReader
-
- initializedSeries - Variable in class loci.formats.in.NDPIReader
-
- initializeFile() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.FILE notification.
- initializeFromMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
Initializes these instance variables from the image metadata:
- initializeFromStream(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- initializeHelper - Variable in class loci.formats.in.NRRDReader
-
- initializeJHDFService(String) - Method in class loci.formats.in.CellH5Reader
-
- initializeMetadata() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.METADATA notification.
- initializeRange() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.RANGE notification.
- initializeRead(int, J2KImageReadParamJava, J2KMetadata) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- initializeReader() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.READER notification.
- initializeScaleTables(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- initializeSeries() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.SERIES notification.
- initializeStack() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.STACK notification.
- initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
Initialize the string table.
- initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
Initialize the string table.
- initImage() - Method in class loci.formats.in.ImageIOReader
-
- initIntArray(String, long[], long) - Method in interface loci.formats.services.JHDFService
-
Creates an HDF5 dataset in path consisting of integers specified
by bytes per pixel bpp.
- initIntArray(String, long[], long) - Method in class loci.formats.services.JHDFServiceImpl
-
- initJPEGWriter(boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
Initializes the JPEGWriter and JPEGParam instance variables.
- initLicense() - Method in class loci.formats.services.LuraWaveServiceImpl
-
- initLicenseCode() - Static method in class loci.plugins.util.LuraWave
-
Reads LuraWave license code from ImageJ preferences, if available.
- initMeaFile(String) - Method in class loci.formats.in.FlexReader
-
Initialize the dataset from a .mea file.
- initMetadata() - Method in class loci.formats.in.BaseTiffReader
-
Populates the metadata hashtable and metadata store.
- initMetadata() - Method in class loci.formats.in.GelReader
-
- initMetadata(String) - Method in class loci.formats.in.LIFReader
-
Parses a string of XML and puts the values in a Hashtable.
- initMetadata(int) - Method in class loci.formats.in.ZeissLSMReader
-
- initMetadataStore() - Method in class loci.formats.in.BaseTiffReader
-
- initMetadataStore() - Method in class loci.formats.in.FEITiffReader
-
- initMetadataStore() - Method in class loci.formats.in.FluoviewReader
-
- initMetadataStore() - Method in class loci.formats.in.ImaconReader
-
- initMetadataStore() - Method in class loci.formats.in.ImprovisionTiffReader
-
- initMetadataStore() - Method in class loci.formats.in.JPKReader
-
- initMetadataStore() - Method in class loci.formats.in.LeicaSCNReader
-
- initMetadataStore() - Method in class loci.formats.in.LEOReader
-
- initMetadataStore() - Method in class loci.formats.in.NDPIReader
-
- initMetadataStore() - Method in class loci.formats.in.NikonElementsTiffReader
-
- initMetadataStore() - Method in class loci.formats.in.NikonTiffReader
-
- initMetadataStore() - Method in class loci.formats.in.PyramidTiffReader
-
- initMetadataStore() - Method in class loci.formats.in.SimplePCITiffReader
-
- initMetadataStore() - Method in class loci.formats.in.SISReader
-
- initMetadataStore() - Method in class loci.formats.in.SlidebookTiffReader
-
- initMetadataStore() - Method in class loci.formats.in.SVSReader
-
- initMetadataStore() - Method in class loci.formats.in.TiffReader
-
- initMetadataStore() - Method in class loci.formats.in.TrestleReader
-
- initMinMax() - Method in class loci.formats.MinMaxCalculator
-
Ensures internal min/max variables are initialized properly.
- initOMEMetadata() - Method in class loci.formats.in.LiFlimReader
-
- initOriginalMetadata() - Method in class loci.formats.in.LiFlimReader
-
- initPixels() - Method in class loci.formats.in.DeltavisionReader
-
- initPlaneReader() - Method in class loci.formats.in.AmiraReader
-
- initPOIService() - Method in class loci.formats.in.FV1000Reader
-
- initPOIService() - Method in class loci.formats.in.IPWReader
-
- initPOIService() - Method in class loci.formats.in.PCIReader
-
- initPOIService() - Method in class loci.formats.in.ZeissZVIReader
-
- initProgressWatch(int, int, String) - Method in interface jj2000.j2k.util.ProgressWatch
-
Initialize the progress watching process
- initReader(int, int) - Method in class loci.formats.FileStitcher
-
- initResFile(String) - Method in class loci.formats.in.FlexReader
-
Initialize the dataset from a .res file.
- initSOP_EPHArrays() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Performs the initialisation of the arrays that are used to store the
values used to write SOP and EPH markers
- initStack(long, int) - Method in class loci.formats.in.OBFReader
-
- initStandardMetadata() - Method in class loci.formats.in.BaseTiffReader
-
Parses standard metadata.
- initStandardMetadata() - Method in class loci.formats.in.DNGReader
-
- initStandardMetadata() - Method in class loci.formats.in.FEITiffReader
-
- initStandardMetadata() - Method in class loci.formats.in.FluoviewReader
-
- initStandardMetadata() - Method in class loci.formats.in.ImaconReader
-
- initStandardMetadata() - Method in class loci.formats.in.ImprovisionTiffReader
-
- initStandardMetadata() - Method in class loci.formats.in.JPKReader
-
- initStandardMetadata() - Method in class loci.formats.in.LeicaSCNReader
-
- initStandardMetadata() - Method in class loci.formats.in.LEOReader
-
- initStandardMetadata() - Method in class loci.formats.in.MetamorphReader
-
- initStandardMetadata() - Method in class loci.formats.in.NDPIReader
-
- initStandardMetadata() - Method in class loci.formats.in.NikonElementsTiffReader
-
- initStandardMetadata() - Method in class loci.formats.in.NikonReader
-
- initStandardMetadata() - Method in class loci.formats.in.NikonTiffReader
-
- initStandardMetadata() - Method in class loci.formats.in.PyramidTiffReader
-
- initStandardMetadata() - Method in class loci.formats.in.SEQReader
-
- initStandardMetadata() - Method in class loci.formats.in.SimplePCITiffReader
-
- initStandardMetadata() - Method in class loci.formats.in.SISReader
-
- initStandardMetadata() - Method in class loci.formats.in.SlidebookTiffReader
-
- initStandardMetadata() - Method in class loci.formats.in.SVSReader
-
- initStandardMetadata() - Method in class loci.formats.in.TiffReader
-
- initStandardMetadata() - Method in class loci.formats.in.TrestleReader
-
- initStates - Variable in class jj2000.j2k.entropy.decoder.MQDecoder
-
The initial state of each context
- initStates - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The initial state of each context
- initSubbandsFields(int, SubbandSyn) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Initialises subbands fields, such as code-blocks dimension and number
of magnitude bits, in the subband tree.
- initSubbandsFields(int, int, Subband) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Initialises subbands fields, such as number of code-blocks and
code-blocks dimension, in the subband tree.
- initTags() - Static method in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
- initTags() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
- initTags() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
-
- initTags() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet
-
- initTags() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
- initTags() - Static method in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
- initTags() - Static method in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
- initTiffParser() - Method in class loci.formats.in.MinimalTiffReader
-
Reinitialize the underlying TiffParser.
- initTile(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Read all tile-part headers of the requested tile.
- initTileComp(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Load options, length calculation type and termination type for
each tile-component.
- initTime - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
The wall time for the initialization.
- initTLM() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
- initVars(String) - Method in class loci.formats.in.BaseZeissReader
-
- initVars(String) - Method in class loci.formats.in.ZeissTIFFReader
-
- initVars(String) - Method in class loci.formats.in.ZeissZVIReader
-
- INK_NAMES - Static variable in class loci.formats.tiff.IFD
-
- INK_SET - Static variable in class loci.formats.tiff.IFD
-
- INK_SET_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "InkSet" tag.
- INK_SET_NOT_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "InkSet" tag.
- InkNames() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.InkNames
-
- InkSet() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.InkSet
-
- inPixels - Variable in class loci.formats.in.OMEXMLReader.OMEXMLHandler
-
- input - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The source raster if write raster.
- input - Variable in class loci.formats.gui.DataConverter
-
- input - Variable in class loci.formats.Memoizer.KryoDeser
-
- inputIsRaster - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Indicates a raster
rather than a RenderedImage
to be encoded.
- inputOrder - Variable in class loci.formats.SwappableMetadata
-
Order in which dimensions are stored.
- inputOrder - Variable in class loci.plugins.in.ImporterOptions
-
- inputRaster - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- inputRaster - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The input source raster.
- InputStreamAdapter - Class in com.sun.media.imageioimpl.plugins.clib
-
- InputStreamAdapter(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
-
- INR_MAGIC - Static variable in class loci.formats.in.INRReader
-
- inReplacePixelsNest - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- INRReader - Class in loci.formats.in
-
INRReader is the file format reader for INR files.
- INRReader() - Constructor for class loci.formats.in.INRReader
-
Constructs a new INR reader.
- inSequence - Variable in class loci.formats.in.DicomReader
-
- insert(int, IIOImage, ImageWriteParam, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- insert(ImageProcessor, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- insertBefore(Node, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- insertNode(PaletteBuilder.ColorNode, Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- insertNodeIntoTree(IIOMetadataNode, IIOMetadataNode) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- insertUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets
-
- insertWarningComment(String) - Method in class loci.formats.out.OMETiffWriter
-
- install(String, String) - Method in class loci.formats.UpgradeChecker
-
Download and install a JAR file from the given URL.
- install(String) - Static method in class loci.plugins.Updater
-
Install the tools bundle which can be retrieved from the specified path.
- installIndividualJars(String, String) - Method in class loci.formats.UpgradeChecker
-
Download and install all of the individual JAR files into the given
directory.
- InstallWizard - Class in loci.plugins.config
-
A wizard for walking users through installation of third party
libraries and plugins used by the Bio-Formats plugins.
- InstallWizard() - Constructor for class loci.plugins.config.InstallWizard
-
- instance - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
-
- instance - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
-
- instance - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
-
- instance - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
- instance - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
- instance - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat
-
- instrumentModel - Variable in class loci.formats.in.NDPIReader
-
- INT - Static variable in class loci.formats.in.CellSensReader
-
- INT - Static variable in class loci.formats.in.GatanReader
-
- INT16 - Static variable in class loci.formats.FormatTools
-
Identifies the INT16 data type used to store pixel values.
- INT16 - Static variable in class loci.formats.in.SPEReader
-
- INT32 - Static variable in class loci.formats.FormatTools
-
Identifies the INT32 data type used to store pixel values.
- INT32 - Static variable in class loci.formats.in.SPEReader
-
- INT8 - Static variable in class loci.formats.FormatTools
-
Identifies the INT8 data type used to store pixel values.
- INT_2 - Static variable in class loci.formats.in.CellSensReader
-
- INT_3 - Static variable in class loci.formats.in.CellSensReader
-
- INT_4 - Static variable in class loci.formats.in.CellSensReader
-
- INT_ARRAY_2 - Static variable in class loci.formats.in.CellSensReader
-
- INT_ARRAY_3 - Static variable in class loci.formats.in.CellSensReader
-
- INT_ARRAY_4 - Static variable in class loci.formats.in.CellSensReader
-
- INT_ARRAY_5 - Static variable in class loci.formats.in.CellSensReader
-
- INT_INTERVAL - Static variable in class loci.formats.in.CellSensReader
-
- INT_RECT - Static variable in class loci.formats.in.CellSensReader
-
- INT_SIGN_BIT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The sign bit for int data
- INT_SIGN_BIT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The sign bit for int data
- intArraySet(int[], int) - Static method in class jj2000.j2k.util.ArrayUtil
-
Reinitializes an int array to the given value in an optimized way.
- intBlk - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Temporary DataBlkInt object (needed when encoder uses floating-point
filters).
- intBlk - Variable in class jj2000.j2k.image.input.ImgReaderPGM
-
Temporary DataBlkInt object (needed when encoder uses floating-point
filters).
- intData - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Boolean to know if one are currently dealing with int or float
data.
- IntegerSpec - Class in jj2000.j2k
-
This class extends ModuleSpec and is responsible of Integer
specifications for each tile-component.
- IntegerSpec(int, int, byte) - Constructor for class jj2000.j2k.IntegerSpec
-
Constructs a new 'IntegerSpec' for the specified number of
tiles and components and with allowed type of
specifications.
- IntegerSpec(int, int, byte, J2KImageWriteParamJava, String, String) - Constructor for class jj2000.j2k.IntegerSpec
-
Constructs a new 'IntegerSpec' for the specified number of
tiles and components, the allowed specifications type
instance.
- INTELLECTUAL_PROPERTY_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- intelProp - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
- intelProp - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
- intenScaling - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields
-
Intensity scaling factor.
- intensity - Variable in class loci.formats.in.LeicaHandler.Laser
-
- intensity - Variable in class loci.formats.in.SDTReader
-
Whether to combine lifetime bins into single intensity image planes.
- intent - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- interlace - Variable in class loci.formats.in.APNGReader
-
- interlace - Variable in class loci.formats.in.GIFReader
-
Interlace flag.
- interlaced - Variable in class loci.formats.codec.MJPBCodecOptions
-
Indicates whether or not channels are interlaced.
- interlaced - Variable in class loci.formats.in.NativeQTReader
-
Set to true if the scanlines in a plane are interlaced (mjpb only).
- interlaceFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- interleaved - Variable in class loci.formats.codec.CodecOptions
-
Indicates whether or not channels are interleaved.
- interleaved - Variable in class loci.formats.CoreMetadata
-
True if channels are stored RGBRGBRGB...; false if channels are stored
RRR...GGG...BBB...
- interleaved - Variable in class loci.formats.FormatWriter
-
Whether the channels in an RGB image are interleaved.
- internalOffsets - Variable in class loci.formats.in.AmiraReader.HxRLE
-
- internalStamps - Variable in class loci.formats.in.MetamorphReader
-
- INTEROPERABILITY_INDEX_R98 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
-
A value to be used with the "InteroperabilityIndex" tag.
- INTEROPERABILITY_INDEX_THM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
-
A value to be used with the "InteroperabilityIndex" tag.
- InteroperabilityIFD() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.InteroperabilityIFD
-
- InteroperabilityIndex() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet.InteroperabilityIndex
-
- interpolate(short[], byte[], int[], int, int, boolean) - Static method in class loci.formats.ImageTools
-
- intFormat(int, int) - Static method in class loci.formats.in.MetamorphReader
-
Formats an integer value with leading 0s if needed.
- intFormatMax(int, int) - Static method in class loci.formats.in.MetamorphReader
-
Formats an integer with leading 0 using maximum sequence number.
- IntIM3Record(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.IntIM3Record
-
- intToMultiByte(int) - Static method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- intValue() - Method in class loci.formats.tiff.TiffRational
-
Returns the value of the specified number as an int.
- INV_ICT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Identifier for the Inverse Irreversible Component
Transformation (INV_ICT).
- INV_RCT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Identifier for the Inverse Reversible Component Transformation
(INV_RCT).
- INVALID_LICENSE_MSG - Static variable in class loci.formats.services.LuraWaveServiceImpl
-
Message to display if an invalid LuraWave license code is given.
- INVALID_PIXELS - Static variable in class loci.formats.in.FEIReader
-
- invalidAndMark(int) - Method in class loci.formats.in.SPCReader
-
- invalidAndMarkInit(int) - Method in class loci.formats.in.SPCReader
-
- InvCompTransf - Class in jj2000.j2k.image.invcomptransf
-
This class apply inverse component transformations to the tiles depending
on specification read from the codestream header.
- InvCompTransf(BlkImgDataSrc, DecoderSpecs, int[]) - Constructor for class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Constructs a new ForwCompTransf object that operates on the
specified source of image data.
- InveonReader - Class in loci.formats.in
-
InveonReader is the file format reader for Inveon files.
- InveonReader() - Constructor for class loci.formats.in.InveonReader
-
Constructs a new Inveon reader.
- inverseFill - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Whether bits are inserted in reverse order (TIFF FillOrder 2).
- InverseWT - Class in jj2000.j2k.wavelet.synthesis
-
This abstract class extends the WaveletTransform one with the specifics of
inverse wavelet transforms.
- InverseWT(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InverseWT
-
Initializes this object with the given source of wavelet
coefficients.
- invert() - Method in class loci.plugins.util.RecordedImageProcessor
-
- inverted - Variable in class loci.formats.in.DicomReader
-
- InvertedCMYKColorSpace - Class in com.sun.media.imageioimpl.common
-
Singleton class representing a simple, mathematically defined
inverted CMYK color space.
- InvertedCMYKColorSpace() - Constructor for class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
-
- invertLut() - Method in class loci.plugins.util.RecordedImageProcessor
-
- invertX - Variable in class loci.formats.in.RHKReader
-
- invertY - Variable in class loci.formats.in.BMPReader
-
- invertY - Variable in class loci.formats.in.ICSReader
-
Whether or not the image is inverted along the Y axis.
- invertY - Variable in class loci.formats.in.RHKReader
-
- invICT(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Apply inverse irreversible component transformation to obtain requested
component from specified block of data.
- invokeMethod(String, String, FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow
-
- invRCT(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Apply inverse component transformation to obtain requested component
from specified block of data.
- invWT - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- InvWT - Interface in jj2000.j2k.wavelet.synthesis
-
This interface extends the WaveletTransform with the
specifics of inverse wavelet transforms.
- InvWTAdapter - Class in jj2000.j2k.wavelet.synthesis
-
This class provides default implementation of the methods in the 'InvWT'
interface.
- InvWTAdapter(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Instantiates the 'InvWTAdapter' object using the specified
'MultiResImgData' source.
- InvWTData - Interface in jj2000.j2k.wavelet.synthesis
-
This interface extends the MultiResImgData interface with the methods that
are necessary for inverse wavelet data (i.e.
- InvWTFull - Class in jj2000.j2k.wavelet.synthesis
-
This class implements the InverseWT with the full-page approach for int and
float data.
- InvWTFull(CBlkWTDataSrcDec, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Initializes this object with the given source of wavelet
coefficients.
- ios - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- ipixels - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- IPLabReader - Class in loci.formats.in
-
IPLabReader is the file format reader for IPLab (.IPL) files.
- IPLabReader() - Constructor for class loci.formats.in.IPLabReader
-
Constructs a new IPLab reader.
- IPW_MAGIC_BYTES - Static variable in class loci.formats.in.IPWReader
-
- IPWReader - Class in loci.formats.in
-
IPWReader is the file format reader for Image-Pro Workspace (IPW) files.
- IPWReader() - Constructor for class loci.formats.in.IPWReader
-
Constructs a new IPW reader.
- ir - Variable in class loci.plugins.in.ThumbLoader
-
- iris - Variable in class loci.formats.in.ZeissLSMReader.Recording
-
- is - Variable in class jj2000.j2k.util.ISRandomAccessIO
-
The InputStream that is wrapped
- IS - Static variable in class loci.formats.in.DicomReader
-
- is1DMode - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor
-
- IS_EOS - Static variable in class jj2000.j2k.util.MsgPrinter
-
Signals that the end-of-string was reached
- IS_GLITCHED - Static variable in class loci.plugins.prefs.OptionsDialog
-
Flag indicating whether to invoke workaround for AWT refresh bug.
- IS_LITTLE - Static variable in class loci.formats.in.ImarisReader
-
Specifies endianness.
- IS_NEWLINE - Static variable in class jj2000.j2k.util.MsgPrinter
-
Signals that a newline was found
- IS_TRANSMISSION - Static variable in class loci.formats.in.CellSensReader
-
- isAttributeRequired(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- isAutoscale() - Method in class loci.plugins.in.ImporterOptions
-
- isBigTiff - Variable in class loci.formats.out.TiffWriter
-
Whether or not the output file is a BigTIFF file.
- isBigTiff() - Method in class loci.formats.tiff.IFD
-
Gets whether this is a BigTIFF IFD.
- isBigTiff() - Method in class loci.formats.tiff.TiffParser
-
Returns whether or not the current TIFF file contains BigTIFF data.
- isBigTiff() - Method in class loci.formats.tiff.TiffSaver
-
Returns whether or not we are writing BigTIFF data.
- isBilevel - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- isBilevel - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- isBinary(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
- isBinary - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- isBitOnByteBoundary() - Method in class loci.formats.codec.BitBuffer
-
Deprecated.
Checks if the current position is on a byte boundary, that is the next
bit in the byte array is the first bit in a byte.
- isBottomUp - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- isCached() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- isCachedFile() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- isCachedMemory() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- isCertain() - Method in class loci.formats.AxisGuesser
-
Gets whether the guesser is confident that all axes are correct.
- isColorLut() - Method in class loci.plugins.util.RecordedImageProcessor
-
- isColorModeColorized() - Method in class loci.plugins.in.ImporterOptions
-
- isColorModeComposite() - Method in class loci.plugins.in.ImporterOptions
-
- isColorModeCustom() - Method in class loci.plugins.in.ImporterOptions
-
- isColorModeDefault() - Method in class loci.plugins.in.ImporterOptions
-
- isColorModeGrayscale() - Method in class loci.plugins.in.ImporterOptions
-
- isCompatibleRaster(Raster) - Method in class loci.formats.gui.Index16ColorModel
-
- isCompatibleRaster(Raster) - Method in class loci.formats.gui.SignedColorModel
-
- isCompatibleRaster(Raster) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- isCompressed - Variable in class loci.formats.in.LIMReader
-
- isCompressionLossless - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Whether the compression is lossless.
- isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Retrieves a value indicating whether the compression is lossless.
- isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
- isCompressionLossless - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Lossless flag for known compression types.
- isCompSpecified(int) - Method in class jj2000.j2k.ModuleSpec
-
Whether or not specifications have been entered for the given
component.
- isCompTransfUsed() - Method in class jj2000.j2k.image.CompTransfSpec
-
Check if component transformation is used in any of the tiles.
- isConcatenate() - Method in class loci.plugins.in.ImporterOptions
-
- isContainer(String) - Method in class loci.formats.in.NativeQTReader
-
Checks if the given String is a container atom type.
- isContiguous - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- isCS_sRGB() - Method in class loci.formats.gui.TwoChannelColorSpace
-
- isDataBufferBitContiguous(SampleModel) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Determines whether the DataBuffer
is filled without
any interspersed padding bits.
- isDataTypeOK(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Returns true
if the given data type
may be used for the data associated with this tag.
- isDeflate - Variable in class loci.formats.in.DicomReader
-
- isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Returns true if the quantizer of given tile-component uses derived
quantization step sizes.
- isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns true if given tile-component uses derived quantization step
sizes.
- isDerived(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec
-
Returns true if given tile-component uses derived quantization step
size.
- isDimensions(String) - Method in class loci.formats.in.ND2Handler
-
Returns whether or not the specified key is denotes dimensions.
- isEnabled - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- isEncodingEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- isEOCFound - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Whether or not a EOC marker has been found instead of a SOT
- isEOFInBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
Whether the end of the file is in the current buffer or not
- isEOLAligned - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor
-
- isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService
-
Determine whether or not two OMEXMLMetadata objects are equal.
- isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- isEven(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- isFalseColor() - Method in class loci.formats.FileStitcher
-
- isFalseColor() - Method in class loci.formats.FormatReader
-
- isFalseColor() - Method in interface loci.formats.IFormatReader
-
- isFalseColor() - Method in class loci.formats.ImageReader
-
- isFalseColor() - Method in class loci.formats.in.FilePatternReader
-
- isFalseColor() - Method in class loci.formats.ReaderWrapper
-
- isFiji() - Static method in class loci.plugins.Updater
-
Returns true if the current ImageJ instance is actually a Fiji instance.
- isFilled() - Method in class loci.formats.ChannelFiller
-
Returns true if the indices are being factored out.
- isFirstBitDepthTable - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- isFirstTime() - Method in class loci.plugins.in.ImporterOptions
-
- isFixed() - Method in class loci.formats.FilePatternBlock
-
Whether or not this is a fixed-width block.
- isFLIM - Variable in class loci.formats.in.ImspectorReader
-
Whether or not this file contains FLIM data.
- isFloatingPoint(IFormatReader) - Static method in class loci.formats.FormatTools
-
Determines whether the given reader represents any floating point data.
- isFloatingPoint(int) - Static method in class loci.formats.FormatTools
-
Determines whether the given pixel type is floating point or integer.
- isForceThumbnails() - Method in class loci.plugins.in.ImporterOptions
-
- isFullPlane(int, int, int, int) - Method in class loci.formats.FormatWriter
-
Returns true if the given rectangle coordinates correspond to a full
image in the given series.
- isFullyNonReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec
-
Check the irreversibility of the whole image.
- isFullyReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec
-
Check the reversibility of the whole image.
- isGrayscaleMapping(IndexColorModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Tests whether the color indices represent a gray-scale image with
the indicated number of bits over the color component range [0,255].
- isGreaterThanEpsilon(double) - Method in class loci.formats.in.SlidebookReader
-
Returns true if the given double is greater than epsilon (defined here as
0.000001), i.e.
- isGroupFiles() - Method in class loci.formats.FileStitcher
-
- isGroupFiles() - Method in class loci.formats.FormatReader
-
- isGroupFiles() - Method in interface loci.formats.IFormatReader
-
Returns true if we should group files in multi-file formats.
- isGroupFiles() - Method in class loci.formats.ImageReader
-
- isGroupFiles() - Method in class loci.formats.in.FilePatternReader
-
- isGroupFiles() - Method in class loci.formats.ReaderWrapper
-
- isGroupFiles() - Method in class loci.plugins.in.ImporterOptions
-
- isGroupFiles(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isHTTP() - Method in class loci.plugins.in.ImporterOptions
-
- isIFD - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- isIFDPointer() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Returns true
if this tag is used to point to an IFD
structure containing additional tags.
- isImageSimple - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- isImageSimple - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- isInCache(int[]) - Method in class loci.formats.cache.Cache
-
Returns true if the object at the given dimensional position is
in the cache.
- isInCache(int) - Method in class loci.formats.cache.Cache
-
Returns true if the object at the given index is in the cache.
- isIndexed - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
Indicates that the colorModel
is a
IndexColorModel
- isIndexed() - Method in class loci.formats.ChannelFiller
-
- isIndexed() - Method in class loci.formats.ChannelMerger
-
- isIndexed() - Method in class loci.formats.FileStitcher
-
- isIndexed() - Method in class loci.formats.FormatReader
-
- isIndexed() - Method in interface loci.formats.IFormatReader
-
Gets whether the image planes are indexed color.
- isIndexed() - Method in class loci.formats.ImageReader
-
- isIndexed() - Method in class loci.formats.in.FilePatternReader
-
- isIndexed() - Method in class loci.formats.ReaderWrapper
-
- isIndexed(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isIndicesForGrayscale(byte[], byte[], byte[]) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Tests whether the color indices represent a gray-scale image.
- isInitialized - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
Initialization flag.
- isInitialized - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- isInsertingEmpty - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- isIntegral - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFField
-
- isIntegral() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Indicates whether the value associated with the field is of
integral data type.
- isIntensity() - Method in class loci.formats.in.SDTReader
-
Gets whether the reader is combining each lifetime
histogram into a summed intensity image plane.
- isInterleaved() - Method in class loci.formats.ChannelMerger
-
- isInterleaved() - Method in class loci.formats.FileStitcher
-
- isInterleaved(int) - Method in class loci.formats.FileStitcher
-
- isInterleaved() - Method in class loci.formats.FormatReader
-
- isInterleaved(int) - Method in class loci.formats.FormatReader
-
- isInterleaved() - Method in class loci.formats.FormatWriter
-
- isInterleaved() - Method in interface loci.formats.IFormatReader
-
Gets whether or not the channels are interleaved.
- isInterleaved(int) - Method in interface loci.formats.IFormatReader
-
Gets whether or not the given sub-channel is interleaved.
- isInterleaved() - Method in interface loci.formats.IFormatWriter
-
Gets whether or not the channels in an image are interleaved.
- isInterleaved() - Method in class loci.formats.ImageReader
-
- isInterleaved(int) - Method in class loci.formats.ImageReader
-
- isInterleaved() - Method in class loci.formats.ImageWriter
-
- isInterleaved() - Method in class loci.formats.in.FilePatternReader
-
- isInterleaved(int) - Method in class loci.formats.in.FilePatternReader
-
- isInterleaved(int) - Method in class loci.formats.in.ICSReader
-
- isInterleaved(int) - Method in class loci.formats.in.SDTReader
-
- isInterleaved() - Method in class loci.formats.ReaderWrapper
-
- isInterleaved(int) - Method in class loci.formats.ReaderWrapper
-
- isInterleaved() - Method in class loci.formats.WriterWrapper
-
- isInterleaved(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isInterleavedSubC(Double, String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isInverted - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- isInvertedLut() - Method in class loci.plugins.util.RecordedImageProcessor
-
- isInvertX() - Method in class loci.formats.in.PrairieMetadata
-
Gets whether the stage position X coordinates are inverted (i.e.,
left-to-right).
- isInvertY() - Method in class loci.formats.in.PrairieMetadata
-
Gets whether the stage position Y coordinates are inverted (i.e.,
bottom-to-top).
- isJNG - Variable in class loci.formats.in.MNGReader
-
- isJP2K - Variable in class loci.formats.in.DicomReader
-
- isJPEG - Variable in class loci.formats.in.BaseZeissReader
-
- isJPEG - Variable in class loci.formats.in.DicomReader
-
- isJPEG - Variable in class loci.formats.in.NativeND2Reader
-
Whether or not the pixel data is compressed using JPEG 2000.
- isJVM64Bit() - Method in class loci.formats.gui.LegacyQTTools
-
Whether this JVM is 64-bit.
- isLeaf - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- isLeaf(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
- isLegacy() - Method in class loci.formats.DelegateReader
-
Gets whether to use the legacy reader by default.
- isLeicaLIFPhysicalSizeBackwardsCompatible() - Static method in class loci.plugins.util.LociPrefs
-
- isLicenseCodeException(FormatException) - Static method in class loci.plugins.util.LuraWave
-
Returns true if the given exception was cause
by a missing or invalid LuraWave license code.
- isLittleEndian() - Method in class loci.formats.FileStitcher
-
- isLittleEndian() - Method in class loci.formats.FormatReader
-
- isLittleEndian() - Method in interface loci.formats.IFormatReader
-
Gets whether the data is in little-endian format.
- isLittleEndian() - Method in class loci.formats.ImageReader
-
- isLittleEndian() - Method in class loci.formats.in.FilePatternReader
-
- isLittleEndian() - Method in class loci.formats.ReaderWrapper
-
- isLittleEndian() - Method in class loci.formats.tiff.IFD
-
Gets whether the TIFF information in this IFD is little-endian.
- isLittleEndian() - Method in class loci.formats.tiff.TiffSaver
-
Returns whether or not we are writing little-endian data.
- isLittleEndian(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isLoadedFromMemo() - Method in class loci.formats.Memoizer
-
- isLocal() - Method in class loci.plugins.in.ImporterOptions
-
- isLossless - Variable in class loci.formats.in.NativeND2Reader
-
Whether or not the pixel data is losslessly compressed.
- isLossless - Variable in class loci.formats.in.ND2Handler
-
- isLossless() - Method in class loci.formats.in.ND2Handler
-
- isMetadataComplete() - Method in class loci.formats.FormatReader
-
- isMetadataComplete() - Method in interface loci.formats.IFormatReader
-
Returns true if this format's metadata is completely parsed.
- isMetadataComplete() - Method in class loci.formats.ImageReader
-
- isMetadataComplete() - Method in class loci.formats.in.FilePatternReader
-
- isMetadataComplete() - Method in class loci.formats.ReaderWrapper
-
- isMetadataComplete(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isMetadataFiltered() - Method in class loci.formats.FormatReader
-
- isMetadataFiltered() - Method in interface loci.formats.IFormatReader
-
Returns true if ugly metadata (entries with unprintable characters,
and extremely large entries) are discarded from the metadata table.
- isMetadataFiltered() - Method in class loci.formats.ImageReader
-
- isMetadataFiltered() - Method in class loci.formats.in.FilePatternReader
-
- isMetadataFiltered() - Method in class loci.formats.ReaderWrapper
-
- isMetadataFiltered(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isMINC2 - Variable in class loci.formats.in.MINCReader
-
- isMinimumMetadata() - Method in class loci.formats.in.PrairieReader
-
Gets whether to populate only the minimum required metadata.
- isMinMaxPopulated() - Method in class loci.formats.MinMaxCalculator
-
Returns true if the values returned by
getChannelGlobalMinimum/Maximum can be trusted.
- isModulo - Variable in class loci.formats.tools.MakeTestOmeTiff
-
- isND2Nikon() - Static method in class loci.plugins.util.LociPrefs
-
- isNode - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
-
Flag indicating whether this subband mask is a node or not
- isNode - Variable in class jj2000.j2k.wavelet.Subband
-
True if it is a node in the tree, false if it is a leaf.
- isNonStandardICCColorSpace(ColorSpace) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Returns true
if the given ColorSpace
object
is an instance of ICC_ColorSpace
but is not one of the
standard ColorSpace
s returned by
ColorSpace.getInstance()
.
- isNormalized() - Method in class loci.formats.FormatReader
-
- isNormalized() - Method in interface loci.formats.IFormatReader
-
Returns true if we should normalize float data.
- isNormalized() - Method in class loci.formats.ImageReader
-
- isNormalized() - Method in class loci.formats.in.FilePatternReader
-
- isNormalized() - Method in class loci.formats.ReaderWrapper
-
- isNormalized(Boolean[]) - Method in class loci.plugins.macro.LociFunctions
-
- isNumeric() - Method in class loci.formats.FilePatternBlock
-
Whether or not this is a numeric block.
- ISO - Static variable in class loci.formats.in.NikonReader
-
- ISO_SENSITIVITY - Static variable in class loci.formats.in.CellSensReader
-
- ISO_SPEED_RATINGS - Static variable in class loci.formats.tiff.IFD
-
- isOIB - Variable in class loci.formats.in.FV1000Reader
-
Flag indicating this is an OIB dataset.
- isOMERO() - Method in class loci.plugins.in.ImporterOptions
-
- isOMEXMLMetadata(Object) - Method in interface loci.formats.services.OMEXMLService
-
Checks whether the given object is an OME-XML metadata object.
- isOMEXMLMetadata(Object) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- isOMEXMLRoot(Object) - Method in interface loci.formats.services.OMEXMLService
-
Checks whether the given object is an OME-XML root object.
- isOMEXMLRoot(Object) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- isOne() - Method in class org.libjpegturbo.turbojpeg.TJScalingFactor
-
Returns true or false, depending on whether this instance is equal to
1/1.
- isOrderCertain() - Method in class loci.formats.FileStitcher
-
- isOrderCertain() - Method in class loci.formats.FormatReader
-
- isOrderCertain() - Method in interface loci.formats.IFormatReader
-
Gets whether the dimension order and sizes are known, or merely guesses.
- isOrderCertain() - Method in class loci.formats.ImageReader
-
- isOrderCertain() - Method in class loci.formats.in.FilePatternReader
-
- isOrderCertain() - Method in class loci.formats.ReaderWrapper
-
- isOrderCertain(String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isOriginalMetadataPopulated() - Method in class loci.formats.FormatReader
-
- isOriginalMetadataPopulated() - Method in interface loci.formats.IFormatReader
-
Returns true if we should save proprietary metadata
in the MetadataStore.
- isOriginalMetadataPopulated() - Method in class loci.formats.ImageReader
-
- isOriginalMetadataPopulated() - Method in class loci.formats.in.FilePatternReader
-
- isOriginalMetadataPopulated() - Method in class loci.formats.ReaderWrapper
-
- isOriginalMetadataPopulated(Boolean[]) - Method in class loci.plugins.macro.LociFunctions
-
- isOriginalSigned(SampleModel) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- isOriginalSigned(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns true if the original data of the specified component was
signed.
- isOrigSig - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
-
An array specifying, for each component,if the data was signed
or not
- isOrigSigned(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Returns true if the data read was originally signed in the specified
component, false if not.
- isOrigSigned(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReader
-
Returns true if the data read was originally signed in the specified
component, false if not.
- isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Returns true if the data read was originally signed in the specified
component, false if not.
- ISOSpeedRatings() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ISOSpeedRatings
-
- isot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT
-
- isPacketWritable() - Method in class jj2000.j2k.codestream.writer.PktEncoder
-
Returns true if the current packet is writable i.e.
- isPictQTJava() - Static method in class loci.plugins.util.LociPrefs
-
- isPositiveValue(Double) - Static method in class loci.formats.FormatTools
-
- isPossible(String, String) - Method in class loci.plugins.prefs.OptionsList
-
Gets whether the specified value is a possible one
for the string option with the given key.
- isPredTerm - Variable in class jj2000.j2k.entropy.encoder.BitToByteOutput
-
Whether or not predictable termination is requested.
- isPreviewName(String) - Method in class loci.formats.in.FV1000Reader
-
- isPseudoColorLut() - Method in class loci.plugins.util.RecordedImageProcessor
-
- isPsotEqualsZero - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Whether or not the last read Psot value was zero.
- isQTExpired() - Method in class loci.formats.gui.LegacyQTTools
-
Whether QuickTime for Java has expired.
- isQTQTJava() - Static method in class loci.plugins.util.LociPrefs
-
- isQuiet() - Method in class loci.plugins.in.ImporterOptions
-
- isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- ISRandomAccessIO - Class in jj2000.j2k.util
-
This class implements a wrapper to turn an InputStream into a
RandomAccessIO.
- ISRandomAccessIO(InputStream, int, int, int) - Constructor for class jj2000.j2k.util.ISRandomAccessIO
-
Creates a new RandomAccessIO wrapper for the given InputStream
'is'.
- ISRandomAccessIO(InputStream) - Constructor for class jj2000.j2k.util.ISRandomAccessIO
-
Creates a new RandomAccessIO wrapper for the given InputStream
'is'.
- isRaw(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
Returns true if file variant is raw format, false if ASCII.
- isRaw(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
Returns true if file variant is raw format, false if ASCII.
- isRaw() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- isRawCodestream - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Whether or not the codestream is raw and not JP2 boxed.
- isRawCodestream() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Whether or not the codestream is raw and not JP2 boxed.
- isReadActiveOnly - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
-
Whether to read the active source region only.
- isReaderEnabled(FormatEntry) - Method in class loci.plugins.config.ConfigWindow
-
- isReaderEnabled(Class<? extends IFormatReader>) - Static method in class loci.plugins.util.LociPrefs
-
- isReaderPref(String, FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow
-
- isReaderWindowless(FormatEntry) - Method in class loci.plugins.config.ConfigWindow
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
-
- isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- isReadOnly - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
Whether the opened file is read only or not (defined by the constructor
arguments)
- isRegex - Variable in class loci.formats.FilePattern
-
Whether or not this FilePattern represents a regular expression.
- isRegex() - Method in class loci.formats.FilePattern
-
Returns whether or not this pattern is a regular expression.
- isRequired - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo
-
- isRescaling - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- isReversible(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder
-
Returns the reversibility of the tile-component data that is provided
by the object.
- isReversible() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Returns true if this transform is reversible in current
tile.
- isReversible() - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Returns true if this transform is reversible in current
tile.
- isReversible(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Returns true if the quantized data is reversible, for the specified
tile-component.
- isReversible(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec
-
Check the reversibility of the given tile-component.
- isReversible(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
Since ROI scaling is always a reversible operation, it calls
isReversible() method of it source (the quantizer module).
- isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns the reversibility of the filter.
- isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns the reversibility of the filter.
- isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
-
Check the reversibility of filters contained is the given
tile-component.
- isReversible(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps
-
Returns the reversibility of the given tile-component.
- isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Returns the reversibility of the wavelet transform for the specified
component and tile.
- isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Returns the reversibility of the wavelet transform for the specified
component, in the current tile.
- isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns the reversibility of the filter.
- isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns the reversibility of the filter.
- isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
-
Check the reversibility of filters contained is the given
tile-component.
- isReversible() - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns the reversibility of the filter.
- isReversible(int, int) - Method in interface jj2000.j2k.wavelet.WaveletTransform
-
Returns the reversibility of the wavelet transform for the
specified component and tile.
- isRGB() - Method in class loci.formats.ChannelFiller
-
- isRGB() - Method in class loci.formats.ChannelMerger
-
- isRGB() - Method in class loci.formats.ChannelSeparator
-
- isRGB() - Method in class loci.formats.FileStitcher
-
- isRGB() - Method in class loci.formats.FormatReader
-
- isRGB() - Method in interface loci.formats.IFormatReader
-
- isRGB() - Method in class loci.formats.ImageReader
-
- isRGB() - Method in class loci.formats.in.FilePatternReader
-
- isRGB() - Method in class loci.formats.ReaderWrapper
-
- isRGB() - Method in interface loci.formats.services.WlzService
-
Gets boolean for whether image is colour or not.
- isRGB() - Method in class loci.formats.services.WlzServiceImpl
-
- isRLE - Variable in class loci.formats.in.DicomReader
-
- isROIinPkt() - Method in class jj2000.j2k.codestream.writer.PktEncoder
-
Tells if there was ROI information in the last written packet
- isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Returns true if the wavelet filter computes or uses the
same "inner" subband coefficient as the full frame wavelet transform,
and false otherwise.
- isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Returns true if the wavelet filter computes or uses the same "inner"
subband coefficient as the full frame wavelet transform, and false
otherwise.
- isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns true if the wavelet filter computes or uses the
same "inner" subband coefficient as the full frame wavelet transform,
and false otherwise.
- isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns true if the wavelet filter computes or uses the same "inner"
subband coefficient as the full frame wavelet transform, and false
otherwise.
- isSameAsFullWT(int, int, int) - Method in interface jj2000.j2k.wavelet.WaveletFilter
-
Returns true if the wavelet filter computes or uses the
same "inner" subband coefficient as the full frame wavelet transform,
and false otherwise.
- isSaved() - Method in class loci.plugins.prefs.Option
-
Gets whether option should be saved to ImageJ preferences file.
- isSaved(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets whether the option with the given key
is saved to the ImageJ preferences file.
- isSavedToMemo() - Method in class loci.formats.Memoizer
-
- isSDTIntensity() - Static method in class loci.plugins.util.LociPrefs
-
- isSeriesOn(int) - Method in class loci.plugins.in.ImporterOptions
-
- isSet(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the value of the boolean option with the given key.
- isSetByDefault(String) - Method in class loci.plugins.prefs.OptionsList
-
Gets the default value of the boolean option with the given key.
- isShowMetadata() - Method in class loci.plugins.in.ImporterOptions
-
- isShowOMEXML() - Method in class loci.plugins.in.ImporterOptions
-
- isSigned - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- isSigned(int) - Static method in class loci.formats.FormatTools
-
Determines whether the given pixel type is signed or unsigned.
- isSingleFile(String) - Method in class loci.formats.FormatReader
-
- isSingleFile(String) - Method in interface loci.formats.IFormatReader
-
Returns true if this is a single-file format.
- isSingleFile(String) - Method in class loci.formats.ImageReader
-
- isSingleFile(String) - Method in class loci.formats.in.AFIReader
-
- isSingleFile(String) - Method in class loci.formats.in.AnalyzeReader
-
- isSingleFile(String) - Method in class loci.formats.in.APLReader
-
- isSingleFile(String) - Method in class loci.formats.in.BDReader
-
- isSingleFile(String) - Method in class loci.formats.in.BioRadReader
-
- isSingleFile(String) - Method in class loci.formats.in.BrukerReader
-
- isSingleFile(String) - Method in class loci.formats.in.CellSensReader
-
- isSingleFile(String) - Method in class loci.formats.in.CellVoyagerReader
-
- isSingleFile(String) - Method in class loci.formats.in.ColumbusReader
-
- isSingleFile(String) - Method in class loci.formats.in.DeltavisionReader
-
- isSingleFile(String) - Method in class loci.formats.in.FakeReader
-
- isSingleFile(String) - Method in class loci.formats.in.FilePatternReader
-
- isSingleFile(String) - Method in class loci.formats.in.FlexReader
-
- isSingleFile(String) - Method in class loci.formats.in.FujiReader
-
- isSingleFile(String) - Method in class loci.formats.in.FV1000Reader
-
- isSingleFile(String) - Method in class loci.formats.in.HitachiReader
-
- isSingleFile(String) - Method in class loci.formats.in.ICSReader
-
- isSingleFile(String) - Method in class loci.formats.in.ImagicReader
-
- isSingleFile(String) - Method in class loci.formats.in.InCellReader
-
- isSingleFile(String) - Method in class loci.formats.in.L2DReader
-
- isSingleFile(String) - Method in class loci.formats.in.LeicaReader
-
- isSingleFile(String) - Method in class loci.formats.in.MetamorphReader
-
- isSingleFile(String) - Method in class loci.formats.in.MIASReader
-
- isSingleFile(String) - Method in class loci.formats.in.MicromanagerReader
-
- isSingleFile(String) - Method in class loci.formats.in.NDPISReader
-
- isSingleFile(String) - Method in class loci.formats.in.NiftiReader
-
- isSingleFile(String) - Method in class loci.formats.in.NRRDReader
-
- isSingleFile(String) - Method in class loci.formats.in.OMETiffReader
-
- isSingleFile(String) - Method in class loci.formats.in.OperettaReader
-
- isSingleFile(String) - Method in class loci.formats.in.PerkinElmerReader
-
- isSingleFile(String) - Method in class loci.formats.in.PrairieReader
-
- isSingleFile(String) - Method in class loci.formats.in.ScanrReader
-
- isSingleFile(String) - Method in class loci.formats.in.ScreenReader
-
- isSingleFile(String) - Method in class loci.formats.in.SPCReader
-
- isSingleFile(String) - Method in class loci.formats.in.TCSReader
-
- isSingleFile(String) - Method in class loci.formats.in.TillVisionReader
-
- isSingleFile(String) - Method in class loci.formats.in.VisitechReader
-
- isSingleFile(String) - Method in class loci.formats.in.ZeissLSMReader
-
- isSingleFile(String) - Method in class loci.formats.in.ZeissTIFFReader
-
- isSingleFile(String) - Method in class loci.formats.ReaderWrapper
-
- isSpecifyRanges() - Method in class loci.plugins.in.ImporterOptions
-
- isSpectralMode() - Method in class loci.formats.in.PrairieMetadata.Sequence
-
- isSplitChannels() - Method in class loci.plugins.in.ImporterOptions
-
- isSplitFocalPlanes() - Method in class loci.plugins.in.ImporterOptions
-
- isSplitTimepoints() - Method in class loci.plugins.in.ImporterOptions
-
- isSpool - Variable in class loci.formats.in.SlidebookReader
-
- isSPWStructure(String) - Method in class loci.formats.in.FakeReader
-
- isSubbandReversible(Subband) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Returns the reversibility of the current subband.
- isSubsampling - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- isSupportedType(int) - Method in class loci.formats.FormatWriter
-
- isSupportedType(int) - Method in interface loci.formats.IFormatWriter
-
Checks if the given pixel type is supported.
- isSupportedType(int) - Method in class loci.formats.ImageWriter
-
- isSupportedType(int) - Method in class loci.formats.WriterWrapper
-
- isSwapDimensions() - Method in class loci.plugins.in.ImporterOptions
-
- isTable() - Method in interface loci.formats.in.PrairieMetadata.Value
-
- isTable() - Method in class loci.formats.in.PrairieMetadata.ValueItem
-
- isTable() - Method in class loci.formats.in.PrairieMetadata.ValueTable
-
- istermbufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The buffer for indicating terminated passes (avoids reallocation for
each code-block), for each thread.
- isTermPass - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
Array of flags indicating terminated passes (valid or non-valid
truncation points).
- isThisType(String, boolean) - Method in class loci.formats.DelegateReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.DelegateReader
-
- isThisType(String) - Method in class loci.formats.FormatHandler
-
Checks if a file matches the type of this format handler.
- isThisType(String, boolean) - Method in class loci.formats.FormatReader
-
Checks if a file matches the type of this format reader.
- isThisType(byte[]) - Method in class loci.formats.FormatReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.FormatReader
-
- isThisType(String) - Method in class loci.formats.FormatReader
-
- isThisType(String) - Method in interface loci.formats.IFormatHandler
-
Checks if the given string is a valid filename for this file format.
- isThisType(String, boolean) - Method in interface loci.formats.IFormatReader
-
Checks if the given file is a valid instance of this file format.
- isThisType(byte[]) - Method in interface loci.formats.IFormatReader
-
Checks if the given block is a valid header for this file format.
- isThisType(RandomAccessInputStream) - Method in interface loci.formats.IFormatReader
-
Checks if the given stream is a valid stream for this file format.
- isThisType(String, boolean) - Method in class loci.formats.ImageReader
-
- isThisType(byte[]) - Method in class loci.formats.ImageReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.ImageReader
-
- isThisType(String) - Method in class loci.formats.ImageReader
-
- isThisType(String) - Method in class loci.formats.ImageWriter
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AFIReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AliconaReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AmiraReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.AnalyzeReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AnalyzeReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.APLReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.APNGReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ARFReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AVIReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.BDReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BDReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadGelReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.BioRadReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadSCNReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BMPReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.BrukerReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BrukerReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BurleighReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CanonRawReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.CellH5Reader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CellH5Reader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CellomicsReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.CellVoyagerReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.CellWorxReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.ColumbusReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ColumbusReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.DeltavisionReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DeltavisionReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.DicomReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DicomReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DNGReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.Ecat7Reader
-
- isThisType(String, boolean) - Method in class loci.formats.in.FakeReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEIReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEITiffReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FlowSightReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FluoviewReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.FujiReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FujiReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.FV1000Reader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FV1000Reader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanDM2Reader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GelReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GIFReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HISReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.HitachiReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HitachiReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HRDGDFReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.I2IReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IM3Reader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImaconReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.ImagicReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisHDFReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IMODReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImprovisionTiffReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImspectorReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCell3000Reader
-
- isThisType(String, boolean) - Method in class loci.formats.in.InCellReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCellReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.INRReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.InveonReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InveonReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPLabReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPWReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IvisionReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.JEOLReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JEOLReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPEG2000Reader
-
- isThisType(String, boolean) - Method in class loci.formats.in.JPEGReader.DefaultJPEGReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPEGReader.DefaultJPEGReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.JPKReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPXReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KhorosReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KodakReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.L2DReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.L2DReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.LegacyND2Reader
-
- isThisType(String, boolean) - Method in class loci.formats.in.LeicaReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LeicaReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.LeicaSCNReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LEOReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LIFReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.MetamorphReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphTiffReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.MIASReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MIASReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.MicromanagerReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MicromanagerReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MinimalTiffReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MNGReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MolecularImagingReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRCReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRWReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeND2Reader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeQTReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.NDPIReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NDPISReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.NiftiReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NiftiReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonElementsTiffReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.NikonReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonTiffReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.NRRDReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NRRDReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OBFReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.OMETiffReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMETiffReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMEXMLReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.OMEXMLReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabRawReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.OperettaReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OperettaReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OxfordInstrumentsReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCIReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.PCORAWReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCORAWReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCXReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.PDSReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PDSReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.PerkinElmerReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PGMReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PhotoshopTiffReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PQBinReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.PrairieReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PrairieReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PSDReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PyramidTiffReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SBIGReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.ScanrReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScanrReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.ScreenReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScreenReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SEQReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SIFReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SimplePCITiffReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SISReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookTiffReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SMCameraReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.SPCReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SPEReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SpiderReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.SVSReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.TCSReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TCSReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TextReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.TillVisionReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TopometrixReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.TrestleReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TrestleReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.UnisokuReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.UnisokuReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VarianFDFReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VGSAMReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.VisitechReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityClippingReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.VolocityReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.WATOPReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.WlzReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissCZIReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissLMSReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissLSMReader
-
- isThisType(String, boolean) - Method in class loci.formats.in.ZeissTIFFReader
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader
-
- isThisType(String, boolean) - Method in class loci.formats.ReaderWrapper
-
- isThisType(byte[]) - Method in class loci.formats.ReaderWrapper
-
- isThisType(RandomAccessInputStream) - Method in class loci.formats.ReaderWrapper
-
- isThisType(String) - Method in class loci.formats.ReaderWrapper
-
- isThisType(String) - Method in class loci.formats.WriterWrapper
-
- isThisType(String, String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isThisTypeFast(String, String[]) - Method in class loci.plugins.macro.LociFunctions
-
- isThumbnailSeries() - Method in class loci.formats.FileStitcher
-
- isThumbnailSeries() - Method in class loci.formats.FormatReader
-
- isThumbnailSeries() - Method in interface loci.formats.IFormatReader
-
Gets whether the current series is a lower resolution copy of a different
series.
- isThumbnailSeries() - Method in class loci.formats.ImageReader
-
- isThumbnailSeries() - Method in class loci.formats.in.FilePatternReader
-
- isThumbnailSeries() - Method in class loci.formats.ReaderWrapper
-
- isTiff - Variable in class loci.formats.in.EPSReader
-
- isTiff - Variable in class loci.formats.in.InCellReader.Image
-
- isTiff - Variable in class loci.formats.in.PerkinElmerReader
-
Flag indicating that the image data is in TIFF format.
- isTiffImageIO() - Static method in class loci.plugins.util.LociPrefs
-
- isTileCompSpecified(int, int) - Method in class jj2000.j2k.ModuleSpec
-
Whether or not a tile-component specification has been defined
- isTiled - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- isTiled() - Method in class loci.formats.tiff.IFD
-
- isTileSpecified(int) - Method in class jj2000.j2k.ModuleSpec
-
Whether or not specifications have been entered for the given
tile.
- isTimeSeries() - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Gets whether this Sequence
should be considered a time series.
- isTopDown() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Returns the value of the topDown
parameter.
- isTopDown - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- isTruncMode - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
True if truncation mode is used.
- isTruncMode - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
True if truncation mode is used.
- isUngroupFiles() - Method in class loci.plugins.in.ImporterOptions
-
- isUsedFile(String) - Method in class loci.formats.FormatReader
-
Returns true if the given file name is in the used files list.
- isUsingPatternIds() - Method in class loci.formats.FileStitcher
-
Gets whether the reader is using file patterns for IDs.
- isValid() - Method in class loci.formats.FilePattern
-
Returns whether or not the file pattern is valid.
- isValidate() - Method in class loci.formats.in.DefaultMetadataOptions
-
- isValidate() - Method in class loci.formats.in.DynamicMetadataOptions
-
- isValidate() - Method in interface loci.formats.in.MetadataOptions
-
Checks whether file validation has been set.
- isValidHeader() - Method in class loci.formats.tiff.TiffParser
-
Tests this stream to see if it represents a TIFF file.
- isValidPlateName(String) - Method in class loci.formats.in.ScreenReader
-
- isValidRange(int, int, int) - Static method in class loci.formats.tools.FakeImage
-
- isValidWbmpType(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- isValidWellName(String) - Method in class loci.formats.in.ScreenReader
-
- isVersionChecking() - Method in class loci.formats.Memoizer
-
Returns whether or not version checking is done based upon major/minor
version numbers.
- isViewBrowser() - Method in class loci.plugins.in.ImporterOptions
-
- isViewHyperstack() - Method in class loci.plugins.in.ImporterOptions
-
- isViewImage5D() - Method in class loci.plugins.in.ImporterOptions
-
- isViewNone() - Method in class loci.plugins.in.ImporterOptions
-
- isViewStandard() - Method in class loci.plugins.in.ImporterOptions
-
- isViewView5D() - Method in class loci.plugins.in.ImporterOptions
-
- isVirtual() - Method in class loci.plugins.in.ImporterOptions
-
- isWhitelistedKey(String) - Method in class loci.formats.ClassList
-
Returns whether a given key is a whitelisted option.
- isWindowless() - Method in class loci.plugins.in.ImporterOptions
-
- isWindowless() - Method in class loci.plugins.in.ImportProcess
-
- isWindowless(IFormatReader) - Static method in class loci.plugins.util.LociPrefs
-
Gets whether windowless mode should be used when
opening this reader's currently initialized dataset.
- isWritingEmpty - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- isWritingSequence - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Whether a sequence is being written.
- isWritingSequence - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- isZlib - Variable in class loci.formats.in.BaseZeissReader
-
- italic - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- ITEM - Static variable in class loci.formats.in.DicomReader
-
- ITEM_DELIMINATION - Static variable in class loci.formats.in.DicomReader
-
- itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ConfigWindow
-
- itemStateChanged(ItemEvent) - Method in class loci.plugins.config.LIFWidgets
-
- itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ND2Widgets
-
- itemStateChanged(ItemEvent) - Method in class loci.plugins.config.PictWidgets
-
- itemStateChanged(ItemEvent) - Method in class loci.plugins.config.QTWidgets
-
- itemStateChanged(ItemEvent) - Method in class loci.plugins.config.SDTWidgets
-
- itemStateChanged(ItemEvent) - Method in class loci.plugins.config.TiffDelegateWidgets
-
- itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ZeissCZIWidgets
-
- itemStateChanged(ItemEvent) - Method in class loci.plugins.in.MainDialog
-
Handles toggling of mutually exclusive options.
- itemStateChanged(ItemEvent) - Method in class loci.plugins.in.SwapDialog
-
- iterateIn(RandomAccessInputStream, Long) - Method in class loci.formats.in.NativeND2Reader
-
Function for iterating through ND2 metaAttributes
- iterator() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
Returns an Iterator
over the TIFF fields.
- its - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- IvisionHandler() - Constructor for class loci.formats.in.IvisionReader.IvisionHandler
-
- IvisionReader - Class in loci.formats.in
-
IvisionReader is the file format reader for IVision (.IPM) files.
- IvisionReader() - Constructor for class loci.formats.in.IvisionReader
-
Constructs a new Ivision reader.
- IvisionReader.IvisionHandler - Class in loci.formats.in
-
- iw - Variable in class loci.formats.in.GIFReader
-
Current image rectangle.
- ix - Variable in class loci.formats.in.GIFReader
-
Current image rectangle.
- iy - Variable in class loci.formats.in.GIFReader
-
Current image rectangle.
- iYTab - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- p - Variable in class loci.formats.in.BioRadReader.Note
-
- p - Variable in class loci.plugins.in.SeriesDialog
-
- p - Variable in class loci.plugins.in.ThumbLoader
-
- P_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- pack() - Method in class loci.plugins.util.DataBrowser
-
Overridden pack method to allow us to delay initial window sizing.
- PackageUtil - Class in com.sun.media.imageioimpl.common
-
- PackageUtil() - Constructor for class com.sun.media.imageioimpl.common.PackageUtil
-
- packBits(byte[], int, int, byte[], int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsCompressor
-
Performs PackBits compression for a single buffer of data.
- PACKBITS - Static variable in class loci.formats.in.PhotoshopTiffReader
-
- PackbitsCodec - Class in loci.formats.codec
-
This class implements packbits decompression.
- PackbitsCodec() - Constructor for class loci.formats.codec.PackbitsCodec
-
- packetData - Variable in class jj2000.j2k.util.CodestreamManipulator
-
Buffers containing the packet data
- packetHeaders - Variable in class jj2000.j2k.util.CodestreamManipulator
-
Buffers contaning the packet headers
- packetIdx - Variable in class jj2000.j2k.codestream.reader.PktInfo
-
Index of the packet
- packetIdx - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
The packet index (when start of packet markers i.e.
- packetPerTilePart - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Specifies the maximum number of packets to be put into one tile-part.
- packetWritable - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
Whether or not the current packet is writable
- packPacketHeaderInMain - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Indicates that the packet headers are packed in the main header.
- packPacketHeaderInTile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Indicates that the packet headers are packed in the tiles' headers.
- PAD - Static variable in class loci.formats.codec.Base64Codec
-
- pad - Variable in class loci.formats.out.QTWriter
-
Number of padding bytes in each row.
- PAD - Static variable in class loci.plugins.config.ConfigWindow
-
- PAD_SEQ - Static variable in class jj2000.j2k.entropy.encoder.BitToByteOutput
-
The alternating sequence of 0's and 1's used for byte padding
- paddedMaskLine - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
-
A line or column of the mask with padding
- padding - Variable in class loci.formats.in.UBMReader
-
- PADDING_BYTES - Static variable in class loci.formats.out.AVIWriter
-
- paddingZeros - Variable in class loci.plugins.in.FilePatternDialog
-
- padImage(BufferedImage, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Pads (or crops) the image to the given width and height.
- padImage(byte[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools
-
Pads (or crops) the byte array to the given width and height.
- padImage(short[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools
-
Pads (or crops) the short array to the given width and height.
- padImage(int[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools
-
Pads (or crops) the int array to the given width and height.
- padImage(float[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools
-
Pads (or crops) the float array to the given width and height.
- padImage(double[], boolean, int, int, int, int) - Static method in class loci.formats.ImageTools
-
Pads (or crops) the double array to the given width and height.
- PAETH - Static variable in class loci.formats.in.APNGReader
-
- page - Variable in class loci.formats.in.SDTInfo
-
- PAGE_NAME - Static variable in class loci.formats.tiff.IFD
-
- PAGE_NUMBER - Static variable in class loci.formats.tiff.IFD
-
- PageName() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PageName
-
- PageNumber() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PageNumber
-
- paintComponent(Graphics) - Method in class loci.formats.gui.CacheIndicator
-
- palette - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- palette - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- palette - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- palette - Variable in class loci.formats.in.BMPReader
-
The palette for indexed color images.
- PALETTE - Static variable in class loci.formats.in.ZeissLSMReader
-
- PALETTE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- PALETTE_COLOR - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
-
- PALETTE_GRAYSCALE - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
-
- PaletteBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is designed to represent a palette box for JPEG 2000 JP2 file
format.
- PaletteBox(IndexColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Constructs a PlatteBox
from an
IndexColorModel
.
- PaletteBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Constructs a PlatteBox
from an
org.w3c.dom.Node
.
- PaletteBox(int, byte[], byte[][]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Constructs a PlatteBox
from the provided length, bit
depths of the color components and the LUT.
- PaletteBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
Constructs a PlatteBox
from the provided byte array.
- PaletteBuilder - Class in com.sun.media.imageioimpl.common
-
This class implements the octree quantization method
as it is described in the "Graphics Gems"
(ISBN 0-12-286166-3, Chapter 4, pages 297-293)
- PaletteBuilder(RenderedImage) - Constructor for class com.sun.media.imageioimpl.common.PaletteBuilder
-
- PaletteBuilder(RenderedImage, int) - Constructor for class com.sun.media.imageioimpl.common.PaletteBuilder
-
- PaletteBuilder.ColorNode - Class in com.sun.media.imageioimpl.common
-
The node of color tree.
- paletteIndex - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- paletteSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- paletteType - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- pane - Variable in class loci.formats.gui.ImageViewer
-
- panel - Variable in class loci.plugins.util.SearchableWindow
-
- param - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- param - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
The ImageReadParam
to create this
renderedImage
.
- param - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
- param - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- PARAMETER_KEYS - Static variable in class loci.formats.in.ICSReader
-
- parameterFile - Variable in class loci.formats.in.JEOLReader
-
- paramFile - Variable in class loci.formats.in.PCORAWReader
-
- params - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Dequantization parameters of all subbands and all components in the
current tile.
- params - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizer
-
The decoding parameters of the dequantizer
- PARAMS - Static variable in class loci.plugins.config.ConfigWindow
-
- parent - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn
-
The reference to the parent of this subband.
- parent - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
The reference to the parent of this subband.
- parentDimension - Variable in class loci.formats.Modulo
-
- parentNames - Variable in class loci.formats.in.FEITiffReader.FEIHandler
-
- parentQName - Variable in class loci.formats.in.FlexReader.FlexHandler
-
- parents - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
The table to link the child to its parent.
- parents - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
The table to link the child to its parent.
- parentTag - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
The parent TIFFTag
of this directory.
- parentType - Variable in class loci.formats.Modulo
-
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Parses the data elements from the byte array.
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Parse the channel definitions from the content data array.
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
Parse the component mapping from the provided content data array.
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
Parses the content of this box from its content byte array.
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
Parse the data elements from the byte array of the content.
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
Parse the data elements from the provided content data array.
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
Parses the data elements from the provided data array.
- parse(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
-
Parses the data elements from the provided content data array.
- parse(int, long, long) - Method in class loci.formats.in.NativeQTReader
-
Parse all of the atoms in the file.
- parse(Element) - Method in class loci.formats.in.PrairieMetadata.Frame
-
Parses metadata from the given Frame
element.
- parse(Element) - Method in class loci.formats.in.PrairieMetadata.PFile
-
Parses metadata from the given File
element.
- parse(Element) - Method in class loci.formats.in.PrairieMetadata.Sequence
-
Parses metadata from the given Sequence
element.
- parseAlayers(String, float) - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
Convenience method that parses the 'Alayers' option.
- parseAndFind(BufferedRandomAccessFile) - Method in class jj2000.j2k.util.CodestreamManipulator
-
This method parses the codestream for SOT, SOP and EPH markers and
removes header header bits signalling SOP and EPH markers if packed
packet headers are used
- parseApplicationTags() - Method in class loci.formats.in.ZeissLSMReader
-
- parseArg(String) - Method in class loci.plugins.in.ImporterOptions
-
Parses the plugin argument for parameter values.
- parseArray(String) - Method in class loci.formats.in.VarianFDFReader
-
Split a String that represents an array into individual elements.
- parseAttributes() - Method in class loci.formats.in.ImarisHDFReader
-
- parseAttributesAndVariables(List<Group>) - Method in class loci.formats.services.NetCDFServiceImpl
-
Recursively parses attribute and variable paths, filling
attributeList
and variableList
.
- parseAxis(Element) - Method in class loci.formats.in.OIRReader
-
- parseBoxes() - Method in class loci.formats.in.JPEG2000MetadataParser
-
Parses the JPEG 2000 JP2 metadata boxes.
- parseByteArray(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Parses the byte array expressed by a string.
- parseCellObjects() - Method in class loci.formats.in.CellH5Reader
-
- parseCFG(Document) - Method in class loci.formats.in.PrairieMetadata
-
Parses metadata from Prairie CFG file.
- parseChannel(Element, boolean) - Method in class loci.formats.in.OIRReader
-
- parseChannelData(Location) - Method in class loci.formats.in.BDReader
-
- parseChannels() - Method in class loci.formats.in.PrairieMetadata
-
- parseChannelTag() - Method in class loci.formats.in.LeicaReader
-
- parseChunks(IRandomAccess) - Method in class loci.formats.in.IM3Reader.ContainerRecord
-
Parse and return the sub-records for the record container
- parseColor(byte, byte, byte) - Static method in class loci.formats.in.BaseZeissReader
-
- parseColor(String) - Method in class loci.formats.in.FakeReader
-
- parseColor(byte, byte, byte) - Static method in class loci.formats.in.ZeissTIFFHandler
-
- parseComment() - Method in class loci.formats.in.FluoviewReader
-
- parseCommentGeneric(String) - Method in class loci.formats.in.TiffReader
-
- parseCommentImageJ(String) - Method in class loci.formats.in.TiffReader
-
- parseCommentMetamorph(String) - Method in class loci.formats.in.TiffReader
-
- parseContiguousCodestream(long) - Method in class loci.formats.in.JPEG2000MetadataParser
-
Parses the JPEG 2000 codestream metadata.
- parseCSVFile(String) - Method in class loci.formats.in.PerkinElmerReader
-
- parseDatabase() - Method in interface loci.formats.services.MDBService
-
Read all tables from a pre-initialized .mdb files.
- parseDatabase() - Method in class loci.formats.services.MDBServiceImpl
-
- parseDeconvolutionLog(MetadataStore) - Method in class loci.formats.in.DeltavisionReader
-
Parse deconvolution output, if it exists.
- parseDimension(String) - Method in class loci.formats.in.APLReader
-
Parse an integer from the given dimension String.
- parseDimensionSizes(String[], String[]) - Method in class loci.formats.in.NikonTiffReader
-
- parseDimensionTag(int) - Method in class loci.formats.in.LeicaReader
-
- parseDOM(Location) - Method in class loci.formats.in.PrairieReader
-
Parses a
Document
from the data in the given file.
- parseDouble(String) - Method in class loci.formats.in.LeicaHandler
-
- parseDouble(String) - Method in class loci.formats.in.LIFReader
-
- parseDouble(String) - Method in class loci.formats.in.TiffReader
-
- parseDouble(String) - Static method in class loci.formats.in.ZeissTIFFHandler
-
Parse a Double from a String.
- parseENV(Document) - Method in class loci.formats.in.PrairieMetadata
-
Parses metadata from Prairie ENV file.
- parseETSFile(String, int) - Method in class loci.formats.in.CellSensReader
-
- parseExperimentTag() - Method in class loci.formats.in.LeicaReader
-
- parseExtraTags() - Method in class loci.formats.in.GatanDM2Reader
-
- parseFDF(String) - Method in class loci.formats.in.VarianFDFReader
-
- parseFile(String, Class<?>) - Method in class loci.formats.ClassList
-
Parses a list of classes from a configuration file.
- parseFile(String, MetamorphHandler) - Method in class loci.formats.in.MetamorphTiffReader
-
- parseFile(DirectoryEntry) - Method in class loci.formats.services.POIServiceImpl
-
- parseFileHeader(List<String>) - Method in class loci.formats.in.TextReader
-
Parses the file looking for the file header.
- parseFilename(String[], int, int) - Method in class loci.formats.in.APLReader
-
- parseFilenames(int) - Method in class loci.formats.in.LeicaReader
-
- parseFilters(String) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
-
Parse filters from the given word
- parseFlexFile(int, int, int, int, boolean, MetadataStore) - Method in class loci.formats.in.FlexReader
-
Parses XML metadata from the Flex file corresponding to the given well.
- parseFrameProperties(Element) - Method in class loci.formats.in.OIRReader
-
- parseHeader() - Method in class loci.formats.in.LiFlimReader
-
- parseHeaderRow(String[]) - Method in class loci.formats.in.TextReader
-
Populates rowLength, xIndex, yIndex, and channels.
- parseIdx(String, int) - Static method in class jj2000.j2k.ModuleSpec
-
This method is responsible of parsing tile indexes set and
component indexes set for an option.
- parseIFD(Node) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- parseImageNames(int) - Method in class loci.formats.in.OpenlabReader
-
- parseImageProperties(Element) - Method in class loci.formats.in.OIRReader
-
- parseImageTag(int) - Method in class loci.formats.in.LeicaReader
-
- parseImageXML(String, int) - Method in class loci.formats.in.ColumbusReader
-
- parseInstrumentData(MetadataStore, int) - Method in class loci.formats.in.LeicaReader
-
- parseInt(String) - Static method in class loci.formats.in.BaseZeissReader
-
Parse an Integer from a String.
- parseInt(String, int) - Static method in class loci.formats.in.BaseZeissReader
-
Parse an Integer from a String.
- parseInt(String) - Method in class loci.formats.in.TiffReader
-
- parseIntArray(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Parses the integer array expressed a string.
- parseKeyAndValue(String, String, int, int, int) - Method in class loci.formats.in.MicromanagerReader
-
- parseKeyAndValue(String, String, String) - Method in class loci.formats.in.ND2Handler
-
- parseKeys(Element, PrairieMetadata.ValueTable) - Method in class loci.formats.in.PrairieMetadata
-
Parses <Key>
elements beneath the given element, into the specified
table.
- parseKeyValue(String, String) - Method in class loci.formats.in.PerkinElmerReader
-
- parseLength(String, String) - Method in class loci.formats.in.FakeReader
-
- parseLine(String) - Method in class loci.formats.ClassList
-
Parses a class from a string including options and comments.
- parseList(String) - Static method in class loci.plugins.prefs.StringOption
-
Parses a string of comma-separated values into a list of tokens.
- parseLogFile(MetadataStore) - Method in class loci.formats.in.DeltavisionReader
-
Extract metadata from associated log file, if it exists.
- parseLUT(int) - Method in class loci.formats.in.LeicaReader
-
- parseLUT(Element, String) - Method in class loci.formats.in.OIRReader
-
- parseMainTags(int, MetadataStore, ArrayList<BaseZeissReader.Tag>) - Method in class loci.formats.in.BaseZeissReader
-
- parseMasks - Variable in class loci.formats.in.MIASReader
-
Whether or not mask pixel data should be parsed in setId.
- parseMasks(MetadataStore) - Method in class loci.formats.in.MIASReader
-
Parse masks into a separate overlay-specific MetadataStore.
- parseMasks(MetadataStore, int, int, String) - Method in class loci.formats.in.MIASReader
-
Parse Mask ROIs from the given TIFF and place them in the given
MetadataStore.
- parseMDB(String) - Method in class loci.formats.in.ZeissLSMReader
-
Parse a .mdb file and return a list of referenced .lsm files.
- parseMetadata() - Method in class loci.formats.in.ZeissCZIReader.SubBlock
-
- parseNotes(MetadataStore) - Method in class loci.formats.in.BioRadReader
-
- parseObjectives(NodeList) - Method in class loci.formats.in.ZeissCZIReader
-
- parseOption(String) - Method in class loci.plugins.prefs.BooleanOption
-
- parseOption(String) - Method in class loci.plugins.prefs.DoubleOption
-
- parseOption(String) - Method in class loci.plugins.prefs.Option
-
Parses the option's value from the given argument string.
- parseOption(String) - Method in class loci.plugins.prefs.StringOption
-
- parseOptions(String) - Method in class loci.formats.ClassList
-
Parses one or more options from a string.
- parseOptions(String) - Method in class loci.plugins.in.Importer
-
Parses core options.
- parseOptions(String) - Method in class loci.plugins.prefs.OptionsList
-
Parses option values from the given argument string.
- parseOriginalMetadata(Node) - Method in class loci.formats.in.OIRReader
-
- parseOverlays(int, long, String, MetadataStore) - Method in class loci.formats.in.ZeissLSMReader
-
Parses overlay-related fields.
- parsePageName() - Method in class loci.formats.in.FluoviewReader
-
- parsePixelsSizeZFromKey(String) - Method in class loci.formats.in.ND2Handler
-
Parses the physical size from a key.
- parsePoints(String) - Static method in class loci.plugins.util.ROIHandler
-
Parse (x, y) coordinates from a String returned by
MetadataRetrieve.getPolygonpoints(...) or
MetadataRetrieve.getPolylinepoints(...)
- parsePosition(int) - Method in class loci.formats.in.MicromanagerReader
-
- parsePosition(String, int) - Method in class loci.formats.in.MicromanagerReader
-
- parsePrairieMetadata() - Method in class loci.formats.in.PrairieReader
-
This step parses the Prairie metadata files into the Prairie-specific
metadata structure,
PrairieReader.meta
.
- parsePVStateShard(Element, PrairieMetadata.ValueTable) - Method in class loci.formats.in.PrairieMetadata
-
Parses the <PVStateShard>
element beneath the given element, into
the specified table.
- parser - Variable in class loci.formats.in.APLReader
-
- parser - Variable in class loci.formats.in.CellSensReader
-
- parser - Variable in class loci.formats.in.FV1000Reader
-
- parser - Variable in class loci.formats.in.ZeissCZIReader
-
- parseRecord(IRandomAccess) - Static method in class loci.formats.in.IM3Reader
-
Parse an IM3 record at the current file pointer location
- parseResFile(String) - Method in class loci.formats.in.FlexReader
-
- parseROIFile(String, MetadataStore, int, int) - Method in class loci.formats.in.FV1000Reader
-
- parseROIs(String, int, Vector) - Static method in class jj2000.j2k.roi.encoder.ROIScaler
-
This function parses the values given for the ROIs with the argument
-Rroi.
- parseROIs(MetadataStore) - Method in class loci.formats.in.BDReader
-
- parseROIs(int) - Method in class loci.formats.in.CellH5Reader
-
- parseROIs(MetadataStore) - Method in class loci.formats.in.TrestleReader
-
- parseROIs(int, String, MetadataStore) - Method in class loci.formats.in.ZeissZVIReader
-
Parse ROI data from the given RandomAccessInputStream and store it in the
given MetadataStore.
- parseROIString(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader
-
- parseSeriesTag() - Method in class loci.formats.in.LeicaReader
-
- parseSetup(String, String) - Method in class loci.formats.in.SPCReader
-
- parseSpectrumRecord(IRandomAccess, IM3Reader.ContainerRecord) - Method in class loci.formats.in.IM3Reader.Spectrum
-
Parse the spectrum record
- parseString(IRandomAccess) - Static method in class loci.formats.in.IM3Reader
-
Parse a string from the IM3 file at the current file pointer loc
- parseStructure() - Method in class loci.formats.in.CellH5Reader
-
- parseTableData(List<String>, int) - Method in class loci.formats.in.TextReader
-
Reads the tabular data into the data array.
- parseTags(int, String, String) - Method in class loci.formats.in.GatanReader
-
Parses Gatan DM3 tags.
- parseTags(MetadataStore) - Method in class loci.formats.in.IPLabReader
-
- parseTags(int, String, MetadataStore) - Method in class loci.formats.in.ZeissZVIReader
-
Parse all of the tags in a stream.
- parseTemplateFile(MetadataStore) - Method in class loci.formats.in.MIASReader
-
Parse metadata from the Nugenesistemplate.txt file.
- parseText(String, int, boolean) - Method in class loci.formats.in.NativeND2Reader
-
- parseTimestamp(String) - Method in class loci.formats.in.BaseZeissReader
-
Parse timestamp from string.
- parseTimeTag(int) - Method in class loci.formats.in.LeicaReader
-
- parseTimFile(String) - Method in class loci.formats.in.PerkinElmerReader
-
- parseUIC1Tags(long, int) - Method in class loci.formats.in.MetamorphReader
-
UIC1 entry parser
- parseUIC2Tags(long) - Method in class loci.formats.in.MetamorphReader
-
Populates metadata fields with some contained in MetaMorph UIC2 Tag.
- parseUIC4Tags(long) - Method in class loci.formats.in.MetamorphReader
-
UIC4 metadata parser
UIC4 Table contains per-plane blocks of metadata
stage X/Y positions,
camera chip offsets,
stage labels...
- parseWellLogFile(int, MetadataStore) - Method in class loci.formats.in.CellWorxReader
-
Parse metadata from a well log file.
- parseXML(String, long) - Method in class loci.formats.in.OIRReader
-
- parseXML(Document) - Method in class loci.formats.in.PrairieMetadata
-
Parses metadata from Prairie XML file.
- parseXMLFile() - Method in class loci.formats.in.MicromanagerReader
-
Parse metadata values from the Acqusition.xml file.
- parseZpoFile(String) - Method in class loci.formats.in.PerkinElmerReader
-
- parsingEnabled - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
-
Enable the parsing mode or not when the decoding rate is specified .
- pass - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Black and white pass mode table.
- PASS_HEIGHTS - Static variable in class loci.formats.in.APNGReader
-
- PASS_WIDTHS - Static variable in class loci.formats.in.APNGReader
-
Interlacing pass dimensions.
- passMode - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Pass mode table.
- PassthroughCodec - Class in loci.formats.codec
-
A codec which just returns the exact data it was given, performing no
compression or decompression.
- PassthroughCodec() - Constructor for class loci.formats.codec.PassthroughCodec
-
- path - Variable in class loci.formats.in.PerkinElmerReader.PixelsFile
-
- path - Variable in class loci.plugins.config.ConfigWindow
-
- path - Variable in class loci.plugins.config.LibraryEntry
-
- pathToImageData - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate
-
- pathToPosition - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate
-
- pathToSegmentationData - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate
-
- pattern - Variable in class loci.formats.FilePattern
-
The file pattern string.
- pattern - Variable in class loci.formats.FileStitcher.ExternalSeries
-
- PATTERN_D - Static variable in class loci.formats.in.CellomicsReader
-
- PATTERN_O - Static variable in class loci.formats.in.CellomicsReader
-
- patternIds - Variable in class loci.formats.FileStitcher
-
Whether string ids given should be treated
as file patterns rather than single file paths.
- PBM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- PBM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- PBM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- PBM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- PCI_MAGIC_BYTES - Static variable in class loci.formats.in.PCIReader
-
- PCIReader - Class in loci.formats.in
-
PCIReader is the file format reader for SimplePCI (Compix) .cxd files.
- PCIReader() - Constructor for class loci.formats.in.PCIReader
-
Constructs a new SimplePCI reader.
- PCORAWReader - Class in loci.formats.in
-
PCORAWReader is the file format reader for PCORAW files.
- PCORAWReader() - Constructor for class loci.formats.in.PCORAWReader
-
Constructs a new PCORAW reader.
- pcs - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
The progression changes specifications
- PCX_MAGIC_BYTE - Static variable in class loci.formats.in.PCXReader
-
- PCXConstants - Interface in com.sun.media.imageioimpl.plugins.pcx
-
- PCXImageReader - Class in com.sun.media.imageioimpl.plugins.pcx
-
- PCXImageReader(PCXImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- PCXImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.pcx
-
- PCXImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
-
- PCXImageWriter - Class in com.sun.media.imageioimpl.plugins.pcx
-
- PCXImageWriter(PCXImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- PCXImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.pcx
-
- PCXImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
-
- PCXMetadata - Class in com.sun.media.imageioimpl.plugins.pcx
-
- PCXMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- PCXReader - Class in loci.formats.in
-
PCXReader is the file format reader for PCX files (originally used by
PC Paintbrush; now used in Zeiss' LSM Image Browser).
- PCXReader() - Constructor for class loci.formats.in.PCXReader
-
Constructs a new PCX reader.
- PDS_MAGIC_STRING - Static variable in class loci.formats.in.PDSReader
-
- PDSReader - Class in loci.formats.in
-
PDSReader is the file format reader for Perkin Elmer densitometer files.
- PDSReader() - Constructor for class loci.formats.in.PDSReader
-
Constructs a new PDS reader.
- periodX - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- periodY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- PerkinElmerReader - Class in loci.formats.in
-
PerkinElmerReader is the file format reader for PerkinElmer files.
- PerkinElmerReader() - Constructor for class loci.formats.in.PerkinElmerReader
-
Constructs a new PerkinElmer reader.
- PerkinElmerReader.PixelsFile - Class in loci.formats.in
-
- pf(Double, String) - Method in class loci.formats.in.PrairieReader
-
Converts the given double
to a PositiveFloat
, or
null
if incompatible.
- PF_ABGR - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
ABGR pixel format.
- PF_ARGB - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
ARGB pixel format.
- PF_BGR - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
BGR pixel format.
- PF_BGRA - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
BGRA pixel format.
- PF_BGRX - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
BGRX pixel format.
- PF_GRAY - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
Grayscale pixel format.
- PF_RGB - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
RGB pixel format.
- PF_RGBA - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
RGBA pixel format.
- PF_RGBX - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
RGBX pixel format.
- PF_XBGR - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
XBGR pixel format.
- PF_XRGB - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
XRGB pixel format.
- PFile(PrairieMetadata.Frame, Element) - Constructor for class loci.formats.in.PrairieMetadata.PFile
-
Creates a new file by parsing the given <File>
element.
- pfsOffset - Variable in class loci.formats.in.NativeND2Reader
-
- pfsStateOffset - Variable in class loci.formats.in.NativeND2Reader
-
- PGM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- PGM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- PGM_MAGIC_CHAR - Static variable in class loci.formats.in.PGMReader
-
- PGM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- PGM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- PGMReader - Class in loci.formats.in
-
PGMReader is the file format reader for Portable Gray Map (PGM) images.
- PGMReader() - Constructor for class loci.formats.in.PGMReader
-
Constructs a new PGMReader.
- PHASE - Static variable in class loci.formats.FormatTools
-
Identifies the Phase dimensional type,
representing a dimension consisting of phases.
- PHASE - Static variable in class loci.formats.in.CellSensReader
-
- phaseLabels - Variable in class loci.formats.in.ZeissCZIReader
-
- phases - Variable in class loci.formats.in.LiFlimReader
-
- phases - Variable in class loci.formats.in.ZeissCZIReader
-
- phases - Variable in class loci.formats.in.ZeissLSMReader
-
- PHOTOBLEACHING - Static variable in class loci.formats.in.CellSensReader
-
- PhotoInterp - Enum in loci.formats.tiff
-
Utility class for working with TIFF photometric interpretations.
- PhotoInterp(int, String, String) - Constructor for enum loci.formats.tiff.PhotoInterp
-
Default constructor.
- PHOTOMETRIC_INTERPRETATION - Static variable in class loci.formats.in.DicomReader
-
- PHOTOMETRIC_INTERPRETATION - Static variable in class loci.formats.tiff.IFD
-
- PHOTOMETRIC_INTERPRETATION_BLACK_IS_ZERO - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PhotometricInterpretation" tag.
- PHOTOMETRIC_INTERPRETATION_CIELAB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PhotometricInterpretation" tag.
- PHOTOMETRIC_INTERPRETATION_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PhotometricInterpretation" tag.
- PHOTOMETRIC_INTERPRETATION_ICCLAB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PhotometricInterpretation" tag.
- PHOTOMETRIC_INTERPRETATION_PALETTE_COLOR - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PhotometricInterpretation" tag.
- PHOTOMETRIC_INTERPRETATION_RGB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PhotometricInterpretation" tag.
- PHOTOMETRIC_INTERPRETATION_TRANSPARENCY_MASK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PhotometricInterpretation" tag.
- PHOTOMETRIC_INTERPRETATION_WHITE_IS_ZERO - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PhotometricInterpretation" tag.
- PHOTOMETRIC_INTERPRETATION_Y_CB_CR - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PhotometricInterpretation" tag.
- PhotometricInterpretation() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PhotometricInterpretation
-
- photometricInterpretation - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The value of the PhotometricInterpretation
tag.
- photometricInterpretation - Variable in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
- photometricInterpretation - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- photometricInterpretation - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- photon(int) - Method in class loci.formats.in.SPCReader
-
- PHOTON_IMAGING_MODE - Static variable in class loci.formats.in.CellSensReader
-
- photosensorReading - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields
-
Photosensor reading.
- PhotoshopTiffReader - Class in loci.formats.in
-
PhotoshopTiffReader is the file format reader for
Adobe Photoshop TIFF files.
- PhotoshopTiffReader() - Constructor for class loci.formats.in.PhotoshopTiffReader
-
Constructs a new Photoshop TIFF reader.
- PHYSICAL_SIZE_TAG - Static variable in class loci.formats.in.SlidebookTiffReader
-
- physicalSizes - Variable in class loci.formats.in.LeicaReader
-
- physicalSizeX - Variable in class loci.formats.in.BaseZeissReader
-
- physicalSizeX - Variable in class loci.formats.in.BioRadSCNReader
-
- physicalSizeX - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- physicalSizeX - Variable in class loci.formats.in.FakeReader
-
- physicalSizeX - Variable in class loci.formats.in.LeicaHandler
-
- physicalSizeX - Variable in class loci.formats.in.NikonTiffReader
-
- physicalSizeX - Variable in class loci.formats.in.OIRReader
-
- physicalSizeX - Variable in class loci.formats.in.SISReader
-
- physicalSizeXs - Variable in class loci.formats.in.LIFReader
-
- physicalSizeY - Variable in class loci.formats.in.BaseZeissReader
-
- physicalSizeY - Variable in class loci.formats.in.BioRadSCNReader
-
- physicalSizeY - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- physicalSizeY - Variable in class loci.formats.in.FakeReader
-
- physicalSizeY - Variable in class loci.formats.in.LeicaHandler
-
- physicalSizeY - Variable in class loci.formats.in.NikonTiffReader
-
- physicalSizeY - Variable in class loci.formats.in.OIRReader
-
- physicalSizeY - Variable in class loci.formats.in.SISReader
-
- physicalSizeYs - Variable in class loci.formats.in.LIFReader
-
- physicalSizeZ - Variable in class loci.formats.in.BaseZeissReader
-
- physicalSizeZ - Variable in class loci.formats.in.FakeReader
-
- physicalSizeZ - Variable in class loci.formats.in.NikonTiffReader
-
- physicalSizeZ - Variable in class loci.formats.in.OIRReader
-
- physicalSizeZ - Variable in class loci.formats.in.TiffReader
-
- physicalX - Variable in class loci.formats.in.VolocityReader.Stack
-
- physicalY - Variable in class loci.formats.in.VolocityReader.Stack
-
- physicalZ - Variable in class loci.formats.in.VolocityReader.Stack
-
- PIC_FILE_ID - Static variable in class loci.formats.in.BioRadReader
-
Numerical ID of a valid Bio-Rad PIC file.
- PIC_SUFFIX - Static variable in class loci.formats.in.BioRadReader
-
- picFiles - Variable in class loci.formats.in.BioRadReader
-
- pict - Variable in class loci.formats.in.OpenlabReader
-
Helper reader to read PICT data.
- pict - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- PICT_9A - Static variable in class loci.formats.in.PictReader
-
- PICT_BITSRECT - Static variable in class loci.formats.in.PictReader
-
- PICT_BITSRGN - Static variable in class loci.formats.in.PictReader
-
- PICT_CLIP_RGN - Static variable in class loci.formats.in.PictReader
-
- PICT_END - Static variable in class loci.formats.in.PictReader
-
- PICT_JPEG - Static variable in class loci.formats.in.PictReader
-
- PICT_LONGCOMMENT - Static variable in class loci.formats.in.PictReader
-
- PICT_PACKBITSRECT - Static variable in class loci.formats.in.PictReader
-
- PICT_PACKBITSRGN - Static variable in class loci.formats.in.PictReader
-
- PICT_TYPE_1 - Static variable in class loci.formats.in.PictReader
-
- PICT_TYPE_2 - Static variable in class loci.formats.in.PictReader
-
- PictReader - Class in loci.formats.in
-
PictReader is the file format reader for Apple PICT files.
- PictReader() - Constructor for class loci.formats.in.PictReader
-
Constructs a new PICT reader.
- pictToImage(byte[]) - Method in class loci.formats.gui.LegacyQTTools
-
Converts the given byte array in PICT format to a Java image.
- PictWidgets - Class in loci.plugins.config
-
Custom widgets for configuring Bio-Formats PICT support.
- PictWidgets() - Constructor for class loci.plugins.config.PictWidgets
-
- pinfo - Static variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The list of parameters that is accepted by the bit stream
readers.
- pinfo - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
The list of parameters that is accepted for quantization.
- pinfo - Static variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The list of parameters that is accepted for packet encoding.
- pinfo - Static variable in class jj2000.j2k.entropy.decoder.EntropyDecoder
-
The list of parameters that is accepted by the entropy
decoders.
- pinfo - Static variable in class jj2000.j2k.entropy.encoder.EntropyCoder
-
The list of parameters that is accepted for entropy coding.
- pinfo - Static variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
The list of parameters that is accepted for entropy coding.
- pinfo - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
The list of parameters that is accepted by the forward
component transformation module.
- pinfo - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
The list of parameters that is accepted by the inverse
component transformation module.
- pinfo - Static variable in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
The list of parameters that is accepted by the bit stream
readers.
- pinfo - Static variable in class jj2000.j2k.quantization.quantizer.Quantizer
-
The list of parameters that is accepted for quantization.
- pinfo - Static variable in class jj2000.j2k.roi.encoder.ROIScaler
-
The list of parameters that are accepted for ROI coding.
- pinfo - Static variable in class jj2000.j2k.roi.ROIDeScaler
-
The list of parameters that is accepted by the entropy decoders.
- pinfo - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
The list of parameters that is accepted for wavelet filters.
- pinfo - Static variable in class jj2000.j2k.wavelet.analysis.ForwardWT
-
The list of parameters that is accepted for wavelet transform.
- pinhole - Variable in class loci.formats.in.ImarisHDFReader
-
- pinhole - Variable in class loci.formats.in.LeicaHandler
-
- pinhole - Variable in class loci.formats.in.LeicaReader
-
- pinhole - Variable in class loci.formats.in.OIRReader.Channel
-
- pinhole - Variable in class loci.formats.in.ZeissCZIReader.Channel
-
- pinhole - Variable in class loci.formats.in.ZeissLSMReader.DetectionChannel
-
- pinholes - Variable in class loci.formats.in.LIFReader
-
- pinholeSize - Variable in class loci.formats.in.FV1000Reader
-
- pinholeSize - Variable in class loci.formats.in.ND2Handler
-
- pinholeSize - Variable in class loci.formats.in.NikonTiffReader
-
- pix - Variable in class loci.formats.in.CanonRawReader
-
- pixbuf - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- pixClk - Variable in class loci.formats.in.SDTInfo
-
- PIXEL_CLOCK - Static variable in class loci.formats.in.CellSensReader
-
- PIXEL_DATA - Static variable in class loci.formats.in.DicomReader
-
- PIXEL_INFO_TYPE - Static variable in class loci.formats.in.CellSensReader
-
- PIXEL_OFFSET - Static variable in class loci.formats.in.BioRadGelReader
-
- PIXEL_OFFSET - Static variable in class loci.formats.in.VGSAMReader
-
- PIXEL_REPRESENTATION - Static variable in class loci.formats.in.DicomReader
-
- PIXEL_SIGN - Static variable in class loci.formats.in.DicomReader
-
- PIXEL_SPACING - Static variable in class loci.formats.in.DicomReader
-
- PIXEL_X_DIMENSION - Static variable in class loci.formats.tiff.IFD
-
- PIXEL_Y_DIMENSION - Static variable in class loci.formats.tiff.IFD
-
- pixelAspectRatio - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- pixelBits - Variable in class loci.formats.gui.SignedColorModel
-
- PixelBlock() - Constructor for class loci.formats.in.OIRReader.PixelBlock
-
- pixelBlocks - Variable in class loci.formats.in.OIRReader
-
- pixelBytes - Variable in class loci.formats.in.NativeQTReader
-
Total number of bytes of pixel data.
- pixelData - Variable in class loci.formats.in.MINCReader
-
- pixelFile - Variable in class loci.formats.in.AnalyzeReader
-
File containing the pixel data.
- pixelFile - Variable in class loci.formats.in.NiftiReader
-
File containing the pixel data.
- pixelLengths - Variable in class loci.formats.in.SlidebookReader
-
- pixelOffset - Variable in class loci.formats.in.AIMReader
-
- pixelOffset - Variable in class loci.formats.in.AnalyzeReader
-
Offset to the pixel data in the .img file.
- pixelOffset - Variable in class loci.formats.in.FitsReader
-
- pixelOffset - Variable in class loci.formats.in.GatanReader
-
Offset to pixel data.
- pixelOffset - Variable in class loci.formats.in.HISReader
-
Offsets to pixel data for each series.
- pixelOffset - Variable in class loci.formats.in.JEOLReader
-
- pixelOffset - Variable in class loci.formats.in.KodakReader
-
- pixelOffset - Variable in class loci.formats.in.MolecularImagingReader
-
- pixelOffset - Variable in class loci.formats.in.NativeQTReader
-
Offset to start of pixel data.
- pixelOffset - Variable in class loci.formats.in.NiftiReader
-
Offset to the pixel data in the .img file.
- pixelOffset - Variable in class loci.formats.in.RHKReader
-
- pixelOffset - Variable in class loci.formats.in.SIFReader
-
- pixelOffset - Variable in class loci.formats.in.TopometrixReader
-
- pixelOffset - Variable in class loci.formats.in.VolocityClippingReader
-
- pixelOffset - Variable in class loci.formats.out.ICSWriter
-
- pixelOffset - Variable in class loci.formats.out.V3DrawWriter
-
- pixelOffsets - Variable in class loci.formats.in.JPXReader
-
- pixelOffsets - Variable in class loci.formats.in.SlidebookReader
-
- pixelOffsets - Variable in class loci.formats.in.VarianFDFReader
-
- pixelOffsets - Variable in class loci.formats.in.VisitechReader
-
- pixelPtr - Variable in class loci.formats.codec.RPZACodec
-
- pixels - Variable in class loci.formats.in.AFIReader
-
- pixels - Variable in class loci.formats.in.GIFReader
-
- pixels - Variable in class loci.formats.in.ImagicReader
-
- pixels - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- Pixels(Attributes) - Constructor for class loci.formats.in.LeicaSCNReader.Pixels
-
- pixels - Variable in class loci.formats.in.ZeissCZIReader
-
- pixels - Variable in class loci.formats.out.ICSWriter
-
- pixels - Variable in class loci.formats.out.V3DrawWriter
-
- pixels2 - Variable in class loci.formats.out.LegacyQTWriter
-
- PIXELS_MARKER - Static variable in class loci.formats.in.VisitechReader
-
- PIXELS_OFFSET - Static variable in class loci.formats.in.ARFReader
-
- PIXELS_OFFSET - Static variable in class loci.formats.in.LIMReader
-
- PIXELS_STRING - Static variable in class loci.formats.in.KodakReader
-
- PIXELS_SUFFIXES - Static variable in class loci.formats.in.InCellReader
-
- PIXELS_TAG - Static variable in class loci.formats.in.ImaconReader
-
- pixelsDone - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- pixelsFile - Variable in class loci.formats.in.FujiReader
-
- pixelsFile - Variable in class loci.formats.in.ImagicReader
-
- pixelsFile - Variable in class loci.formats.in.PDSReader
-
- PixelsFile() - Constructor for class loci.formats.in.PerkinElmerReader.PixelsFile
-
- pixelsFilename - Variable in class loci.formats.in.AnalyzeReader
-
- pixelsFilename - Variable in class loci.formats.in.NiftiReader
-
- pixelsFiles - Variable in class loci.formats.in.BrukerReader
-
- pixelsFiles - Variable in class loci.formats.in.TillVisionReader
-
- pixelsFiles - Variable in class loci.formats.in.VolocityReader.Stack
-
- pixelSize - Variable in class loci.formats.in.FV1000Reader
-
- pixelSize - Variable in class loci.formats.in.IPLabReader
-
- pixelSize - Variable in class loci.formats.in.MicromanagerReader.Position
-
- pixelSize - Variable in class loci.formats.in.ScanrReader
-
- pixelSize - Variable in class loci.formats.in.SVSReader
-
- pixelSize - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
- pixelSizes - Variable in class loci.formats.in.GatanReader
-
List of pixel sizes.
- pixelSizes - Variable in class loci.formats.in.NRRDReader
-
- pixelSizeT - Variable in class loci.formats.in.FV1000Reader
-
- pixelSizeT - Variable in class loci.formats.in.ImprovisionTiffReader
-
- pixelSizeUnits - Variable in class loci.formats.in.GatanDM2Reader
-
- pixelSizeX - Variable in class loci.formats.in.DicomReader
-
- pixelSizeX - Variable in class loci.formats.in.FV1000Reader
-
- pixelSizeX - Variable in class loci.formats.in.GatanDM2Reader
-
- pixelSizeX - Variable in class loci.formats.in.ImarisHDFReader
-
- pixelSizeX - Variable in class loci.formats.in.ImprovisionTiffReader
-
- pixelSizeX - Variable in class loci.formats.in.MetamorphHandler
-
- pixelSizeX - Variable in class loci.formats.in.ND2Handler
-
- pixelSizeX - Variable in class loci.formats.in.PerkinElmerReader
-
- pixelSizeX - Variable in class loci.formats.in.VarianFDFReader
-
- pixelSizeX - Variable in class loci.formats.in.ZeissLSMReader
-
- pixelSizeY - Variable in class loci.formats.in.DicomReader
-
- pixelSizeY - Variable in class loci.formats.in.FV1000Reader
-
- pixelSizeY - Variable in class loci.formats.in.GatanDM2Reader
-
- pixelSizeY - Variable in class loci.formats.in.ImarisHDFReader
-
- pixelSizeY - Variable in class loci.formats.in.ImprovisionTiffReader
-
- pixelSizeY - Variable in class loci.formats.in.MetamorphHandler
-
- pixelSizeY - Variable in class loci.formats.in.ND2Handler
-
- pixelSizeY - Variable in class loci.formats.in.PerkinElmerReader
-
- pixelSizeY - Variable in class loci.formats.in.VarianFDFReader
-
- pixelSizeY - Variable in class loci.formats.in.ZeissLSMReader
-
- pixelSizeZ - Variable in class loci.formats.in.DicomReader
-
- pixelSizeZ - Variable in class loci.formats.in.FV1000Reader
-
- pixelSizeZ - Variable in class loci.formats.in.ImarisHDFReader
-
- pixelSizeZ - Variable in class loci.formats.in.ImprovisionTiffReader
-
- pixelSizeZ - Variable in class loci.formats.in.ND2Handler
-
- pixelSizeZ - Variable in class loci.formats.in.VarianFDFReader
-
- pixelSizeZ - Variable in class loci.formats.in.ZeissLSMReader
-
- pixelsOffset - Variable in class loci.formats.in.BioRadSCNReader
-
- pixelsOffset - Variable in class loci.formats.in.BurleighReader
-
- pixelsOffset - Variable in class loci.formats.in.InCell3000Reader
-
- pixelsOffset - Variable in class loci.formats.in.JPEG2000Reader
-
- pixelsOffset - Variable in class loci.formats.in.QuesantReader
-
- pixelsOffsets - Variable in class loci.formats.in.ImspectorReader
-
List of offsets to each block of pixel data.
- pixelsPerPlane - Variable in class loci.formats.in.AmiraReader.ASCII
-
- pixelsRead - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- pixelsStream - Variable in class loci.formats.in.TillVisionReader
-
- pixelStack - Variable in class loci.formats.in.GIFReader
-
- pixelsToRead - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- pixelType - Variable in class loci.formats.CoreMetadata
-
Describes the number of bytes per pixel.
- pixelType - Variable in class loci.formats.in.AmiraReader.ASCII
-
- pixelType - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry
-
- pixelType - Variable in class loci.formats.services.WlzServiceImpl
-
- pixelTypeFromBytes(int, boolean, boolean) - Static method in class loci.formats.FormatTools
-
Returns an appropriate pixel type given the number of bytes per pixel.
- pixelTypeFromString(String) - Static method in class loci.formats.FormatTools
-
Takes a string value and maps it to one of the pixel type enumerations.
- pixelTypeIndex - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- pixelTypes - Static variable in class loci.formats.FormatTools
-
Human readable pixel type.
- pixelUIDs - Variable in class loci.formats.in.OIRReader
-
- PixelXDimension() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.PixelXDimension
-
- PixelYDimension() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.PixelYDimension
-
- pixTime - Variable in class loci.formats.in.SDTInfo
-
- pkdPktHeaders - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
The packed packet headers if the PPM or PPT markers are used
- pktDec - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Reference to the PktDecoder instance
- PktDecoder - Class in jj2000.j2k.codestream.reader
-
This class is used to read packet's head and body.
- PktDecoder(DecoderSpecs, HeaderDecoder, RandomAccessIO, BitstreamReaderAgent, boolean, int) - Constructor for class jj2000.j2k.codestream.reader.PktDecoder
-
Creates an empty PktDecoder object associated with given decoder
specifications and HeaderDecoder.
- pktEnc - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Packet encoder.
- PktEncoder - Class in jj2000.j2k.codestream.writer
-
This class builds packets and keeps the state information of packet
interdependencies.
- PktEncoder(CodedCBlkDataSrcEnc, J2KImageWriteParamJava, Point[][][]) - Constructor for class jj2000.j2k.codestream.writer.PktEncoder
-
Creates a new packet header encoder, using the information from the
'infoSrc' object.
- PktHeaderBitReader - Class in jj2000.j2k.codestream.reader
-
This class provides a bit based reading facility from a byte based one,
applying the bit unstuffing procedure as required by the packet headers.
- PktHeaderBitReader(RandomAccessIO) - Constructor for class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
Instantiates a 'PktHeaderBitReader' that gets the byte data from the
given source.
- PktHeaderBitReader(ByteArrayInputStream) - Constructor for class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
Instantiates a 'PktHeaderBitReader' that gets the byte data from the
given source.
- pktHL - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Length of each packet head found in the tile
- pktIdx - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
-
Index of the packet where each layer has been found
- pktIdx - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
Index of the current packet in the tile.
- PktInfo - Class in jj2000.j2k.codestream.reader
-
This class defines an object used to countain informations about a packet
to which the current code-block belongs.
- PktInfo(int, int) - Constructor for class jj2000.j2k.codestream.reader.PktInfo
-
Classe's constructor.
- placeWindow(Window) - Static method in class loci.plugins.util.WindowTools
-
Places the given window at a nice location on screen, either centered
below the ImageJ window if there is one, or else centered on screen.
- planar - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
true
if the image is encoded using separate planes.
- PLANAR_CONFIGURATION - Static variable in class loci.formats.in.DicomReader
-
- PLANAR_CONFIGURATION - Static variable in class loci.formats.tiff.IFD
-
- PLANAR_CONFIGURATION_CHUNKY - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PlanarConfiguration" tag.
- PLANAR_CONFIGURATION_PLANAR - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "PlanarConfiguration" tag.
- planarCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- PlanarConfiguration() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PlanarConfiguration
-
- planarConfiguration - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- plane - Variable in class loci.formats.in.CanonRawReader
-
- Plane() - Constructor for class loci.formats.in.ColumbusReader.Plane
-
- Plane() - Constructor for class loci.formats.in.OperettaReader.Plane
-
- plane - Variable in class loci.formats.in.ZeissCZIReader.Coordinate
-
- Plane(String, ZeissTIFFHandler.TagSet) - Constructor for class loci.formats.in.ZeissTIFFHandler.Plane
-
Constructor
- Plane() - Constructor for class loci.formats.in.ZeissTIFFReader.Plane
-
- PLANE_ORIGIN_RWC - Static variable in class loci.formats.in.CellSensReader
-
- PLANE_SCALE_RWC - Static variable in class loci.formats.in.CellSensReader
-
- PLANE_UNIT - Static variable in class loci.formats.in.CellSensReader
-
- planeCount() - Method in class loci.formats.out.OMETiffWriter
-
- PlaneData() - Constructor for class loci.formats.in.FV1000Reader.PlaneData
-
- planeDeltaT - Variable in class loci.formats.in.FlexReader
-
- planeExposureTime - Variable in class loci.formats.in.FlexReader
-
- planeIndex - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- planeIndexes - Variable in class loci.plugins.util.BFVirtualStack
-
- PlaneInfo() - Constructor for class loci.formats.in.OpenlabReader.PlaneInfo
-
- planeMax - Variable in class loci.formats.MinMaxCalculator
-
Max values for each plane.
- planeMin - Variable in class loci.formats.MinMaxCalculator
-
Min values for each plane.
- planeName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- planeNames - Variable in class loci.formats.in.ZeissTIFFHandler
-
- planeOffset - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- planeOffset - Variable in class loci.formats.in.SlidebookReader
-
- planeOffset - Variable in class loci.formats.out.EPSWriter
-
- planeOffsets - Variable in class loci.formats.in.OpenlabReader
-
- planePadding - Variable in class loci.formats.in.VolocityReader.Stack
-
- planePositionX - Variable in class loci.formats.in.FlexReader
-
- planePositionY - Variable in class loci.formats.in.FlexReader
-
- planePositionZ - Variable in class loci.formats.in.FlexReader
-
- planeReader - Variable in class loci.formats.in.AmiraReader
-
- planes - Variable in class loci.formats.in.ColumbusReader
-
- planes - Variable in class loci.formats.in.FV1000Reader
-
- planes - Variable in class loci.formats.in.OpenlabReader
-
- planes - Variable in class loci.formats.in.OperettaReader.OperettaHandler
-
- planes - Variable in class loci.formats.in.OperettaReader
-
- planes - Variable in class loci.formats.in.ZeissCZIReader
-
- planes - Variable in class loci.formats.in.ZeissTIFFHandler
-
- planes - Variable in class loci.formats.in.ZeissTIFFReader
-
Image planes
- planeSize - Variable in class loci.formats.in.AmiraReader.HxRLE
-
- planeSize - Variable in class loci.formats.in.AmiraReader.HxZip
-
- planesPerBlock - Variable in class loci.formats.in.ImspectorReader
-
Number of planes in each block of pixel data.
- planesWritten - Variable in class loci.formats.out.AVIWriter
-
- PLATE - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- plate - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate
-
- plate - Variable in class loci.formats.in.MIASReader.AnalysisFile
-
- PLATE - Static variable in class loci.formats.ResourceNamer
-
- plateAcqStartTime - Variable in class loci.formats.in.FlexReader
-
- plateBarcode - Variable in class loci.formats.in.FlexReader
-
- plateCols - Variable in class loci.formats.in.OperettaReader.OperettaHandler
-
- plateColumns - Variable in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- plateCount - Variable in class loci.formats.in.FlexReader
-
- plateDescription - Variable in class loci.formats.in.BDReader
-
- plateDescription - Variable in class loci.formats.in.OperettaReader.OperettaHandler
-
- plateID - Variable in class loci.formats.in.OperettaReader.OperettaHandler
-
- plateLogFile - Variable in class loci.formats.in.CellWorxReader
-
- plateMap - Variable in class loci.formats.in.InCellReader
-
- plateMaps - Variable in class loci.formats.in.ScreenReader
-
- plateMetadataFiles - Variable in class loci.formats.in.ScreenReader
-
- plateName - Variable in class loci.formats.in.BDReader
-
- plateName - Variable in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- plateName - Variable in class loci.formats.in.FlexReader
-
- plateName - Variable in class loci.formats.in.OperettaReader.OperettaHandler
-
- plateName - Variable in class loci.formats.in.ScanrReader
-
- plateRows - Variable in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- plateRows - Variable in class loci.formats.in.OperettaReader.OperettaHandler
-
- plateType - Variable in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- PLM - Static variable in interface jj2000.j2k.codestream.Markers
-
Packet length, main header (PLM): 0xFF57
- PLM_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for PLM marker segment found
- PLT - Static variable in interface jj2000.j2k.codestream.Markers
-
Packet length, tile-part header (PLT): 0xFF58
- PLT_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for PLT marker segment found
- plugin - Variable in class loci.plugins.in.Importer
-
A handle to the plugin wrapper, for toggling
the canceled and success flags.
- plugin - Variable in class loci.plugins.out.Exporter
-
- plugins - Static variable in class loci.plugins.shortcut.ShortcutPanel
-
Details for installed plugins.
- PN - Static variable in class loci.formats.in.DicomReader
-
- PNG - Static variable in class loci.formats.in.CellSensReader
-
- PNG_SIG - Static variable in class loci.formats.out.APNGWriter
-
- PNGBlock() - Constructor for class loci.formats.in.APNGReader.PNGBlock
-
- PNGInputStream(String) - Constructor for class loci.formats.in.APNGReader.PNGInputStream
-
- PNGInputStream(String, int) - Constructor for class loci.formats.in.APNGReader.PNGInputStream
-
- PNMImageReader - Class in com.sun.media.imageioimpl.plugins.pnm
-
This class is the Java Image IO plugin reader for PNM images.
- PNMImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
Constructs PNMImageReader
from the provided
ImageReaderSpi
.
- PNMImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.pnm
-
- PNMImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
-
- PNMImageWriteParam - Class in com.sun.media.imageio.plugins.pnm
-
A subclass of ImageWriteParam
for writing images in
the PNM format.
- PNMImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam
-
Constructs a PNMImageWriteParam
object with default values
for parameters.
- PNMImageWriter - Class in com.sun.media.imageioimpl.plugins.pnm
-
The Java Image IO plugin writer for encoding a binary RenderedImage into
a PNM format.
- PNMImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
Constructs PNMImageWriter
based on the provided
ImageWriterSpi
.
- PNMImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.pnm
-
- PNMImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
-
- PNMMetadata - Class in com.sun.media.imageioimpl.plugins.pnm
-
Metadata for the PNM plug-in.
- PNMMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
Constructor containing code shared by other constructors.
- PNMMetadata(IIOMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- PNMMetadata(ImageTypeSpecifier, ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
Constructs a default image PNMMetadata
object appropriate
for the given image type and write parameters.
- PNMMetadataFormat - Class in com.sun.media.imageioimpl.plugins.pnm
-
- PNMMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
Constructs PNMMetadataFormat
.
- PNMMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.pnm
-
- PNMMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources
-
- poc - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the POC marker segments found in main and first tile-part
header.
- POC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.POC
-
- POC - Static variable in interface jj2000.j2k.codestream.Markers
-
- POC_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for POC marker segment found
- poi - Variable in class loci.formats.in.FV1000Reader
-
- poi - Variable in class loci.formats.in.IPWReader
-
Helper reader - parses embedded files from the OLE document.
- poi - Variable in class loci.formats.in.PCIReader
-
- poi - Variable in class loci.formats.in.ZeissZVIReader
-
- POINT - Static variable in class loci.formats.in.FV1000Reader
-
ROI types.
- pointCount - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- points - Variable in enum loci.formats.in.BaseZeissReader.FeatureType
-
- points - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- points - Variable in class loci.formats.in.FakeReader
-
- points - Variable in class loci.formats.in.IMODReader
-
- points - Variable in class loci.formats.in.LiFlimReader.ROI
-
- pointsToString() - Method in class loci.formats.in.LiFlimReader.ROI
-
- PointStyle(int) - Constructor for enum loci.formats.in.BaseZeissReader.PointStyle
-
- pointStyle - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- POIService - Interface in loci.formats.services
-
Interface defining methods for reading Microsoft OLE2 documents using
OME's fork of Apache POI.
- POIServiceImpl - Class in loci.formats.services
-
- POIServiceImpl() - Constructor for class loci.formats.services.POIServiceImpl
-
Default constructor.
- polarityF - Variable in class loci.formats.in.SDTInfo
-
- polarityL - Variable in class loci.formats.in.SDTInfo
-
2 = disabled line markers.
- polarityP - Variable in class loci.formats.in.SDTInfo
-
- POLARIZATION - Static variable in class loci.formats.FormatTools
-
Identifies the Polarization dimensional type,
representing a dimension consisting of polarization states.
- POLYGON - Static variable in class loci.formats.in.FV1000Reader
-
- POLYGON - Static variable in class loci.formats.in.LeicaHandler.ROI
-
- POLYGON - Static variable in class loci.formats.in.LIFReader.ROI
-
- polygons - Variable in class loci.formats.in.FakeReader
-
- POLYLINE - Static variable in class loci.formats.in.FV1000Reader
-
- POLYLINE_ARROW - Static variable in class loci.formats.in.ZeissLSMReader
-
- polylines - Variable in class loci.formats.in.FakeReader
-
- poolName - Variable in class jj2000.j2k.util.ThreadPool
-
The name of the pool
- poolPriority - Variable in class jj2000.j2k.util.ThreadPool
-
The priority for the pool
- populateCircles(NodeList, int, int) - Method in class loci.formats.in.ZeissCZIReader
-
- populateCore - Variable in class loci.formats.in.FlexReader.FlexHandler
-
- populateCoreMetadata(int, int, int, List<String>) - Method in class loci.formats.in.FlexReader
-
Populate core metadata using the given list of image names.
- populateCoreMetadata() - Method in class loci.formats.in.PrairieReader
-
- populateCoreMetadata(int, int, int, int, int) - Method in class loci.formats.in.TextReader
-
- populateExtendedMetadata() - Method in class loci.formats.in.NiftiReader
-
- populateGlobalMetaData() - Method in class loci.formats.in.SPEReader
-
This function is used to populate values not contained in Core Meta Data to the Global Meta Data
- populateImage(OMEXMLMetadata, int) - Method in class loci.formats.out.OMETiffWriter
-
- populateLines(NodeList, int, int) - Method in class loci.formats.in.ZeissCZIReader
-
- populateMaskPixels(int, int, int, MetadataStore) - Method in class loci.formats.in.MIASReader
-
Populate the MaskPixels.BinData attribute for the Mask identified by the
given Image index, ROI index, and Shape index.
- populateMetadata() - Method in class loci.formats.in.MicromanagerReader
-
- populateMetadata(MetadataStore, int, String, CoreMetadata) - Static method in class loci.formats.MetadataTools
-
- populateMetadata(MetadataStore, int, String, boolean, String, String, int, int, int, int, int, int) - Static method in class loci.formats.MetadataTools
-
Populates the given
MetadataStore
, for the specified series, using
the provided values.
- populateMetadata(MetadataStore, String, int, String, boolean, String, String, int, int, int, int, int, int) - Static method in class loci.formats.MetadataTools
-
Populates the given
MetadataStore
, for the specified series, using
the provided values.
- populateMetadataStore(MetadataStore) - Method in class loci.formats.in.FlexReader
-
- populateMetadataStore(MetadataStore, String) - Method in class loci.formats.in.FV1000Reader
-
- populateMetadataStore(String[]) - Method in class loci.formats.in.MicromanagerReader
-
- populateMetadataStore(ND2Handler) - Method in class loci.formats.in.NativeND2Reader
-
- populateMetadataStore() - Method in class loci.formats.in.TillVisionReader
-
- populateMetadataStore(ZeissLSMReader.SubBlock, MetadataStore, int) - Method in class loci.formats.in.ZeissLSMReader
-
- populateMetadataStoreImageJ(MetadataStore) - Method in class loci.formats.in.TiffReader
-
Checks the original metadata table for ImageJ-specific information
to propagate into the metadata store.
- populateObjective(MetadataStore, int) - Method in class loci.formats.in.DeltavisionReader
-
Populate an Objective based upon the lens ID.
- populateOMEMetadata(IniTable, MetadataStore) - Method in class loci.formats.in.HitachiReader
-
- populateOMEMetadata() - Method in class loci.formats.in.PrairieReader
-
- populateOriginalMetadata(Element, Deque<String>) - Method in class loci.formats.in.LIFReader
-
- populateOriginalMetadata() - Method in class loci.formats.in.PrairieReader
-
- populateOriginalMetadata(Element, Deque<String>) - Method in class loci.formats.in.ZeissCZIReader
-
- populateOriginalMetadata(OMEXMLMetadata, Hashtable<String, Object>) - Method in interface loci.formats.services.OMEXMLService
-
Adds the key/value pairs in the specified Hashtable as new
OriginalMetadata annotations in the given OME-XML metadata object.
- populateOriginalMetadata(OMEXMLMetadata, String, String) - Method in interface loci.formats.services.OMEXMLService
-
Adds the specified key/value pair as a new OriginalMetadata node
to the given OME-XML metadata object.
- populateOriginalMetadata(OMEXMLMetadata, Hashtable<String, Object>) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- populateOriginalMetadata(OMEXMLMetadata, String, String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- populatePixels(MetadataStore, IFormatReader) - Static method in class loci.formats.MetadataTools
-
Populates the Pixels element of the given metadata store, using core
metadata from the given reader.
- populatePixels(MetadataStore, IFormatReader, boolean) - Static method in class loci.formats.MetadataTools
-
Populates the Pixels element of the given metadata store, using core
metadata from the given reader.
- populatePixels(MetadataStore, IFormatReader, boolean, boolean) - Static method in class loci.formats.MetadataTools
-
Populates the Pixels element of the given metadata store, using core
metadata from the given reader.
- populatePixelsOnly(MetadataStore, IFormatReader) - Static method in class loci.formats.MetadataTools
-
- populatePixelsOnly(MetadataStore, int, boolean, String, String, int, int, int, int, int, int) - Static method in class loci.formats.MetadataTools
-
- populatePixelType(int) - Method in class loci.formats.in.NiftiReader
-
- populatePolylines(NodeList, int, int, boolean) - Method in class loci.formats.in.ZeissCZIReader
-
- populateRectangles(NodeList, int, int) - Method in class loci.formats.in.ZeissCZIReader
-
- populateROI(List<String>, String[], int, int, int, int, MetadataStore) - Method in class loci.formats.in.MIASReader
-
- populateRoiMetaData(MetadataStore) - Method in class loci.formats.in.SPEReader
-
Reads and populates ROI Meta Data values.
- populateROIs(MetadataStore) - Method in class loci.formats.in.ND2Handler
-
- populateSPW(MetadataStore, int, int, int, int, int, int, boolean) - Method in class loci.formats.in.FakeReader
-
- populateTiffData(OMEXMLMetadata, int[], int, int, int) - Method in class loci.formats.out.OMETiffWriter
-
- populateXY - Variable in class loci.formats.in.ND2Handler
-
- pos - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
- pos - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
Progression order specifications
- pos - Variable in class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
The index of the next character to read from the input stream buffer
- pos - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
The current position in the byte-buffer
- pos - Variable in class jj2000.j2k.util.ISRandomAccessIO
-
- pos(int) - Method in class loci.formats.cache.CacheStrategy
-
Shortcut for converting rasterized position to N-D position.
- pos(int, int[]) - Method in class loci.formats.cache.CacheStrategy
-
Shortcut for converting rasterized position to N-D position,
using the given array instead of allocating a new one.
- pos - Variable in class loci.formats.in.AVIReader
-
- POS_COMP_RES_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType
-
The bit stream is Position/Component/Resolution/Layer progressive : 3
- position - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
The position of the first sample of this image in the stream.
- position - Variable in class loci.formats.in.MicromanagerReader.Index
-
- Position() - Constructor for class loci.formats.in.MicromanagerReader.Position
-
- position - Variable in class loci.formats.in.NativeND2Reader.ChunkMapEntry
-
- position - Variable in class loci.formats.in.OBFReader.Stack
-
- POSITION_CHANGED - Static variable in class loci.formats.cache.CacheEvent
-
Event type indicating an updated current dimensional position.
- positionCount - Variable in class loci.formats.in.NativeND2Reader
-
- positions - Variable in class jj2000.j2k.util.CodestreamManipulator
-
The positions of the SOT, SOP and EPH markers
- positions - Variable in class loci.formats.cache.CacheStrategy
-
The list of dimensional positions to consider caching, in order of
preference based on strategy, axis priority and planar ordering.
- positions - Variable in class loci.formats.in.MicromanagerReader.Position
-
- positions - Variable in class loci.formats.in.MicromanagerReader
-
- positions - Variable in class loci.formats.in.ZeissCZIReader
-
- positionsMatch(int, int) - Method in class loci.formats.in.PrairieReader
-
Verifies that stage coordinates match for all (P, Z) across time.
- positionsX - Variable in class loci.formats.in.ZeissCZIReader
-
- positionsY - Variable in class loci.formats.in.ZeissCZIReader
-
- positionsZ - Variable in class loci.formats.in.ZeissCZIReader
-
- positionToRaster(int[], int[]) - Static method in class loci.formats.FormatTools
-
Computes a unique 1-D index corresponding
to the given multidimensional position.
- positionX - Variable in class loci.formats.in.ColumbusReader.Plane
-
- positionX - Variable in class loci.formats.in.DicomReader
-
- positionX - Variable in class loci.formats.in.FV1000Reader.PlaneData
-
- positionX - Variable in class loci.formats.in.MetamorphHandler
-
- positionX - Variable in class loci.formats.in.OperettaReader.Plane
-
- positionY - Variable in class loci.formats.in.ColumbusReader.Plane
-
- positionY - Variable in class loci.formats.in.DicomReader
-
- positionY - Variable in class loci.formats.in.FV1000Reader.PlaneData
-
- positionY - Variable in class loci.formats.in.MetamorphHandler
-
- positionY - Variable in class loci.formats.in.OperettaReader.Plane
-
- positionZ - Variable in class loci.formats.in.ColumbusReader.Plane
-
- positionZ - Variable in class loci.formats.in.DicomReader
-
- positionZ - Variable in class loci.formats.in.FV1000Reader.PlaneData
-
- positionZ - Variable in class loci.formats.in.OperettaReader.Plane
-
- posNames - Variable in class loci.formats.in.ND2Handler
-
- possibleValues - Variable in class loci.plugins.prefs.StringOption
-
List of possible values.
- post - Variable in class loci.formats.NumberFilter
-
String appearing after the numerical block.
- PostCompRateAllocator - Class in jj2000.j2k.entropy.encoder
-
This is the abstract class from which post-compression rate allocators
which generate layers should inherit.
- PostCompRateAllocator(CodedCBlkDataSrcEnc, int, CodestreamWriter, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
Initializes the source of entropy coded data.
- posX - Variable in class loci.formats.in.GatanReader
-
- posX - Variable in class loci.formats.in.InCellReader
-
- posX - Variable in class loci.formats.in.LIFReader
-
- posX - Variable in class loci.formats.in.NativeND2Reader
-
- posX - Variable in class loci.formats.in.ND2Handler
-
- posY - Variable in class loci.formats.in.GatanReader
-
- posY - Variable in class loci.formats.in.InCellReader
-
- posY - Variable in class loci.formats.in.LIFReader
-
- posY - Variable in class loci.formats.in.NativeND2Reader
-
- posY - Variable in class loci.formats.in.ND2Handler
-
- posZ - Variable in class loci.formats.in.GatanReader
-
- posZ - Variable in class loci.formats.in.LIFReader
-
- posZ - Variable in class loci.formats.in.NativeND2Reader
-
- posZ - Variable in class loci.formats.in.ND2Handler
-
- PovrayReader - Class in loci.formats.in
-
PovrayReader is the file format reader for POV-Ray .df3 files.
- PovrayReader() - Constructor for class loci.formats.in.PovrayReader
-
Constructs a new POV-Ray reader.
- power - Variable in class loci.formats.in.ND2Handler
-
- power - Variable in class loci.formats.in.OIRReader.Laser
-
- power - Variable in class loci.formats.in.ZeissLSMReader.Laser
-
- power1 - Static variable in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
-
The exponent for gamma correction.
- power1 - Static variable in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
-
The exponent for gamma correction.
- pph - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
Flag indicating whether packed packet header was used for this tile
- pphbais - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
The packed packet header if it was used
- pphs - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
Packed packet header specifications
- ppinfo - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
Array containing the coordinates, width, height, indexes, ...
- ppinfo - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
Array containing the coordinates, width, height, indexes, ...
- PPM - Static variable in interface jj2000.j2k.codestream.Markers
-
Packed packet headers, main header (PPM): 0xFF60
- PPM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- PPM_ASCII - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- PPM_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for SOD marker segment found
- PPM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- PPM_RAW - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- pPMMarkerData - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Array containing the Nppm and Ippm fields of the PPM marker segments
- ppmUsed - Variable in class jj2000.j2k.util.CodestreamManipulator
-
Flag indicating whether packed packet headers in main header is used
- ppoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
-
- PPT - Static variable in interface jj2000.j2k.codestream.Markers
-
Packed packet headers, tile-part header (PPT): 0xFF61
- ppt - Variable in class jj2000.j2k.util.CodestreamManipulator
-
The number of packets per tile
- PPT_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for SOD marker segment found
- pptp - Variable in class jj2000.j2k.util.CodestreamManipulator
-
The number of packets per tile-part
- pptUsed - Variable in class jj2000.j2k.util.CodestreamManipulator
-
Flag indicating whether packed packet headers in tile headers is used
- PQBinReader - Class in loci.formats.in
-
PQBinReader is the file format reader for PicoQuant .bin files.
- PQBinReader() - Constructor for class loci.formats.in.PQBinReader
-
Constructs a new PQBin reader.
- PRAIRIE_SUFFIXES - Static variable in class loci.formats.in.PrairieReader
-
- PRAIRIE_TAG_1 - Static variable in class loci.formats.in.PrairieReader
-
- PRAIRIE_TAG_2 - Static variable in class loci.formats.in.PrairieReader
-
- PRAIRIE_TAG_3 - Static variable in class loci.formats.in.PrairieReader
-
- PrairieMetadata - Class in loci.formats.in
-
Metadata structure for Prairie Technologies' TIFF-based format.
- PrairieMetadata(Document, Document, Document) - Constructor for class loci.formats.in.PrairieMetadata
-
Creates a new Prairie metadata by parsing the given XML, CFG and/or ENV
documents.
- PrairieMetadata.Frame - Class in loci.formats.in
-
A Prairie <Frame>
, beneath a <Sequence>
.
- PrairieMetadata.PFile - Class in loci.formats.in
-
A Prairie <File>
beneath a <Frame>
.
- PrairieMetadata.Sequence - Class in loci.formats.in
-
A Prairie <Sequence>
.
- PrairieMetadata.Value - Interface in loci.formats.in
-
A value in a Prairie metadata dictionary.
- PrairieMetadata.ValueItem - Class in loci.formats.in
-
- PrairieMetadata.ValueTable - Class in loci.formats.in
-
A table of values.
- PrairieReader - Class in loci.formats.in
-
PrairieReader is the file format reader for
Prairie Technologies' TIFF variant.
- PrairieReader() - Constructor for class loci.formats.in.PrairieReader
-
Constructs a new Prairie TIFF reader.
- pre - Variable in class loci.formats.NumberFilter
-
String appearing before the numerical block.
- PRE_AMP_SETTING - Static variable in class loci.formats.in.FluoviewReader
-
- PREAMP_GAIN_VALUE - Static variable in class loci.formats.in.CellSensReader
-
- PrecCoordInfo - Class in jj2000.j2k.codestream
-
This class is used to store the coordinates of precincts.
- PrecCoordInfo(int, int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.PrecCoordInfo
-
Constructor.
- PrecCoordInfo() - Constructor for class jj2000.j2k.codestream.PrecCoordInfo
-
Empty Constructor.
- precedence - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
- PRECINCT_PARTITION_DEF_SIZE - Static variable in interface jj2000.j2k.codestream.Markers
-
The default size exponent of the precincts
- precinctPartition - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Specifies precinct partition dimensions for tiles/components.
- precinctPartition - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
boolean used to signal if the precinct partition is used for
each component and each tile.
- precinctPartitionIsUsed - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Is the precinct partition used
- precinctPartitionUsed() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the boolean used to know if the precinct partition is used
- precinctPartitionUsed(int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc
-
Returns true if the precinct partition is used for the
specified component and tile, returns false otherwise
- precinctPartitionUsed(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Returns true if precinct partition is used for the specified
component and tile, returns false otherwise.
- PrecinctSizeSpec - Class in jj2000.j2k.entropy
-
This class extends ModuleSpec class for precinct partition sizes holding
purposes.
- PrecinctSizeSpec(int, int, byte, IntegerSpec) - Constructor for class jj2000.j2k.entropy.PrecinctSizeSpec
-
Creates a new PrecinctSizeSpec object for the specified number of tiles
and components.
- PrecinctSizeSpec(int, int, byte, BlkImgDataSrc, IntegerSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.PrecinctSizeSpec
-
Creates a new PrecinctSizeSpec object for the specified number of tiles
and components and the J2KImageWriteParamJava instance.
- PrecInfo - Class in jj2000.j2k.codestream
-
Class that holds precinct coordinates and references to contained
code-blocks in each subband.
- PrecInfo(int, int, int, int, int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.PrecInfo
-
Class constructor.
- preDefinedColorSpaces - Static variable in class com.sun.media.imageio.stream.RawImageInputStream
-
- preDefinedTypes - Static variable in class com.sun.media.imageio.stream.RawImageInputStream
-
- PREDICTED_CLASS_LABELS - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- Predictor() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Predictor
-
- predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor
-
- predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater
-
- predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor
-
- predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- predictor - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- PREDICTOR - Static variable in class loci.formats.tiff.IFD
-
- PREDICTOR_HORIZONTAL_DIFFERENCING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Predictor" tag.
- PREDICTOR_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Predictor" tag.
- PREF_CZI_ATTACHMENT - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_CZI_AUTOSTITCH - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_LEICA_LIF_PHYSICAL_SIZE - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_ND2_CHUNKMAP - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_ND2_NIKON - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_PICT_QTJAVA - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_QT_QTJAVA - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_READER_ENABLED - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_READER_WINDOWLESS - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_SDT_INTENSITY - Static variable in class loci.plugins.util.LociPrefs
-
- PREF_TIFF_IMAGEIO - Static variable in class loci.plugins.util.LociPrefs
-
- prefix - Variable in class loci.formats.in.GIFReader
-
- prefix - Variable in class loci.formats.in.ND2Handler
-
- PREFIX - Static variable in class loci.formats.in.TCSReader
-
- prefix - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo
-
- prefix_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor
-
the prefix code which represents the predecessor string to current input point
- PREFIX_PATH - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- preLoad - Variable in class loci.formats.in.SDTReader
-
Whether to pre-load all lifetime bins for faster loading.
- prepareGZipStream(int) - Method in class loci.formats.in.LiFlimReader
-
- prepareInsertEmpty(int, ImageTypeSpecifier, int, int, IIOMetadata, List, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- prepareRead(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- prepareReplacePixels(int, Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- prepareToWriteImage(int, byte[], IFD, int, int, int, int) - Method in class loci.formats.out.TiffWriter
-
Performs the preparation for work prior to the usage of the TIFF saver.
- prepareWriteEmpty(IIOMetadata, ImageTypeSpecifier, int, int, IIOMetadata, List, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- prepareWriteSequence(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- prepareWriteSequence(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- prepend(ClassList<T>) - Method in class loci.formats.ClassList
-
Prepends a class list which must be assignable to the base class
- prepend(List<Class<? extends T>>) - Method in class loci.formats.ClassList
-
Prepends a list of classes which must be assignable to the base class
- preprocess(RandomAccessInputStream) - Method in class loci.formats.codec.JPEGTileDecoder
-
Pre-process the stream to make sure that the
image width and height are non-zero.
- PRESCANS - Static variable in class loci.formats.in.FluoviewReader
-
- PRESENT - Static variable in class loci.plugins.config.LibraryEntry
-
HTML markup for installed library.
- prestitched - Variable in class loci.formats.in.ZeissCZIReader
-
- prevBuf - Variable in class loci.formats.in.ZeissLSMReader
-
- prevChangingElems - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- prevChannel - Variable in class loci.formats.in.ZeissLSMReader
-
- prevElement - Variable in class loci.formats.in.ND2Handler
-
- PREVIEWNAME_PREFIXES - Static variable in class loci.formats.in.FV1000Reader
-
- previewNames - Variable in class loci.formats.in.FV1000Reader
-
- PreviewPane - Class in loci.formats.gui
-
PreviewPane is a panel for use as a JFileChooser accessory, displaying
a thumbnail for the selected image, loaded in a separate thread.
- PreviewPane(JFileChooser) - Constructor for class loci.formats.gui.PreviewPane
-
Constructs a preview pane for the given file chooser.
- prevImage - Variable in class loci.formats.in.ICSReader
-
- previousChannel - Variable in class loci.formats.in.ZeissCZIReader
-
- previousImage - Variable in class loci.formats.codec.CodecOptions
-
Pixels for preceding image (READ/WRITE).
- previousTag - Variable in class loci.formats.in.CellSensReader
-
- prevPixels - Variable in class loci.formats.in.NativeQTReader
-
Pixel data for the previous image plane.
- prevPlane - Variable in class loci.formats.in.NativeQTReader
-
Previous plane number.
- prevPlane - Variable in class loci.formats.in.ZeissLSMReader
-
- prevRegion - Variable in class loci.formats.in.ZeissLSMReader
-
- prevRuntype - Variable in class loci.formats.in.ND2Handler
-
- prevtIdxs - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The last encoded truncation point for each code-block.
- PRIMARY_CHROMATICITIES - Static variable in class loci.formats.tiff.IFD
-
- PrimaryChromaticities() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.PrimaryChromaticities
-
- primaryFileGUID - Variable in class loci.formats.in.ZeissCZIReader.FileHeader
-
- print(PrintWriter, int, int, String) - Method in class jj2000.j2k.util.MsgPrinter
-
Formats the message to print in the current line width, by
breaking the message into lines between words.
- print(int, long, String) - Method in class loci.formats.in.NativeQTReader
-
Debugging method; prints information on an atom.
- printArray(String, int[]) - Static method in class loci.formats.tools.CacheConsole
-
Helper utility for outputing contents of an int array, used by main.
- printIFD() - Method in class loci.formats.tiff.IFD
-
Prints the contents of this IFD.
- printInfo - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Whether or not to print information found in codestream
- println(String, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- println(String, int, int) - Method in interface jj2000.j2k.util.MsgLogger
-
Prints the string 'str' to the output device, appending a line
return.
- println(String, int, int) - Method in class jj2000.j2k.util.StreamMsgLogger
-
Prints the string 'str' to the 'out' stream, appending a newline.
- printmsg(int, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- printmsg(int, String) - Method in interface jj2000.j2k.util.MsgLogger
-
Prints the message 'msg' to the output device, appending a newline,
with severity 'sev'.
- printmsg(int, String) - Method in class jj2000.j2k.util.StreamMsgLogger
-
Prints the message 'msg' to the output device, appending a newline,
with severity 'sev'.
- printOrder(String, Cache) - Static method in class loci.formats.tools.CacheConsole
-
Helper utility for outputing cache strategy's order, used by main.
- printSizes(Component) - Static method in class loci.plugins.config.SpringUtilities
-
A debugging utility that prints to stdout the component's
minimum, preferred, and maximum sizes.
- printSource(String, Cache) - Static method in class loci.formats.tools.CacheConsole
-
Helper utility for outputing cache's associated source, used by main.
- printStrategy(String, Cache) - Static method in class loci.formats.tools.CacheConsole
-
Helper utility for outputing cache's associated strategy, used by main.
- priorities - Variable in class loci.formats.cache.CacheStrategy
-
Priority for caching each axis.
- PRIORITIES - Static variable in class loci.formats.gui.CacheComponent
-
- PRIORITIES_CHANGED - Static variable in class loci.formats.cache.CacheEvent
-
Event type indicating new axis priorities.
- priority - Variable in class loci.formats.gui.CacheComponent
-
Combo boxes for choosing axis priority.
- PRIORITY_VALUES - Static variable in class loci.formats.gui.CacheComponent
-
- priorityIndex(int) - Method in class loci.formats.gui.CacheComponent
-
Converts enumerated priority value to priority chooser index.
- priorityValue(int) - Method in class loci.formats.gui.CacheComponent
-
Converts priority chooser index to enumerated priority value.
- probeLabel - Variable in class loci.formats.gui.ImageViewer
-
- proc - Variable in class loci.plugins.util.RecordedImageProcessor
-
- process - Variable in class loci.plugins.in.Calibrator
-
- process - Variable in class loci.plugins.in.Colorizer
-
- process - Variable in class loci.plugins.in.DisplayHandler
-
- process - Variable in class loci.plugins.in.ImagePlusReader
-
Import preparation process managing Bio-Formats readers and other state.
- process - Variable in class loci.plugins.in.ImporterDialog
-
- process - Variable in class loci.plugins.in.ImporterPrompter
-
- processBuffer(int) - Method in class loci.formats.in.SPCReader
-
- processElement(String) - Method in class loci.formats.in.FEITiffReader.FEIHandler
-
- processImageProgressWrapper(float) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Wrapper for the protected method processImageProgress
So it can be access from the classes which are not in
ImageReader
hierarchy.
- processImageProgressWrapper(float) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
Wrapper for the protected method processImageProgress
So it can be access from the classes which are not in
ImageWriter
hierachy.
- processImageProgressWrapper(float) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
Wrapper for the protected method processImageProgress
So it can be access from the classes which are not in
ImageReader
hierachy.
- processImageUpdateWrapper(BufferedImage, int, int, int, int, int, int, int[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Wrapper for the protected method processImageUpdate
So it can be access from the classes which are not in
ImageReader
hierarchy.
- processImageUpdateWrapper(BufferedImage, int, int, int, int, int, int, int[]) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
Wrapper for the protected method processImageUpdate
So it can be access from the classes which are not in
ImageReader
hierachy.
- processOnRegistration(ServiceRegistry, Class, String, ImageReaderWriterSpi, int, int) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
- producer - Variable in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- profile - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
- profile - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
ICC profile
- PROFILE_EMBEDDED - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- PROFILE_LINKED - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- prog - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk
-
The progressive flag, false by default (see above).
- progress - Variable in class loci.formats.gui.DataConverter
-
- progress(boolean, int, int) - Static method in class loci.plugins.BF
-
- Progression - Class in jj2000.j2k.entropy
-
This class holds one of the different progression orders defined in
the bit stream.
- Progression(int, int, int, int, int, int) - Constructor for class jj2000.j2k.entropy.Progression
-
Constructor.
- progressionName - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
The specified (tile-component) progression.
- ProgressionSpec - Class in jj2000.j2k.entropy
-
This class extends ModuleSpec class for progression type(s) and progression
order changes holding purposes.
- ProgressionSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.ProgressionSpec
-
Creates a new ProgressionSpec object for the specified number of tiles
and components.
- ProgressionSpec(int, int, int, IntegerSpec, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.ProgressionSpec
-
Creates a new ProgressionSpec object for the specified number of
tiles, components and the J2KImageWriteParamJava instance.
- progressionType - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
See above.
- progressionType - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Specifies which type of progression should be used when generating
the codestream.
- ProgressionType - Interface in jj2000.j2k.codestream
-
This interface defines the identifiers for the different bit stream
profiles and progression types.
- progressive - Variable in class jj2000.j2k.image.DataBlk
-
The progressive attribute (false by default)
- ProgressWatch - Interface in jj2000.j2k.util
-
- promptColors() - Method in class loci.plugins.in.ImporterPrompter
-
Prompts for color details, if necessary.
- promptCrop() - Method in class loci.plugins.in.ImporterPrompter
-
Prompts for cropping details, if necessary.
- promptFilePattern() - Method in class loci.plugins.in.ImporterPrompter
-
Prompts for the file pattern, if necessary.
- promptId() - Method in class loci.plugins.in.ImporterPrompter
-
- promptLicenseCode(String, boolean) - Static method in class loci.plugins.util.LuraWave
-
Prompts the user to enter their LuraWave
license code in an ImageJ dialog window.
- promptLocation() - Method in class loci.plugins.in.ImporterPrompter
-
- promptMain() - Method in class loci.plugins.in.ImporterPrompter
-
- promptMemory() - Method in class loci.plugins.in.ImporterPrompter
-
Prompts for confirmation of memory usage, if necessary.
- promptRange() - Method in class loci.plugins.in.ImporterPrompter
-
Prompts for the range of planes to import, if necessary.
- promptSeries() - Method in class loci.plugins.in.ImporterPrompter
-
Prompts for which series to import, if necessary.
- promptSwap() - Method in class loci.plugins.in.ImporterPrompter
-
Prompts for dimension swapping parameters, if necessary.
- promptUpgrade() - Method in class loci.plugins.in.ImporterPrompter
-
- PROP_LUT - Static variable in class loci.plugins.in.ImagePlusReader
-
Special property prefix for storing planar LUTs.
- PROP_SERIES - Static variable in class loci.plugins.in.ImagePlusReader
-
Special property for storing series number associated with the image.
- properties - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
A Hashtable containing the image properties.
- PROPERTY_FILE - Static variable in class loci.formats.FormatTools
-
- PROPERTY_SET_VOLUME - Static variable in class loci.formats.in.CellSensReader
-
- propertyChange(PropertyChangeEvent) - Method in class loci.formats.gui.PreviewPane
-
Property change event, to listen for when a new
file is selected, or the file chooser closes.
- props - Variable in class loci.formats.in.DynamicMetadataOptions
-
- pruneNodes(Node, boolean) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
Removes nonessential nodes from a JPEG native image metadata tree.
- PSD_MAGIC_STRING - Static variable in class loci.formats.in.PSDReader
-
- PSDReader - Class in loci.formats.in
-
PSDReader is the file format reader for Photoshop PSD files.
- PSDReader() - Constructor for class loci.formats.in.PSDReader
-
Constructs a new PSD reader.
- psot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT
-
- pss - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
Precinct partition specifications
- pss - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The precinct partition specifications
- pss - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The precinct partition specifications
- ptyEnd - Variable in class loci.formats.in.FV1000Reader
-
- ptyPattern - Variable in class loci.formats.in.FV1000Reader
-
- ptyStart - Variable in class loci.formats.in.FV1000Reader
-
- put(String, Object) - Method in class loci.formats.in.BaseTiffReader
-
- put(String, int) - Method in class loci.formats.in.BaseTiffReader
-
- put(String, boolean) - Method in class loci.formats.in.BaseTiffReader
-
- put(String, byte) - Method in class loci.formats.in.BaseTiffReader
-
- put(String, char) - Method in class loci.formats.in.BaseTiffReader
-
- put(String, double) - Method in class loci.formats.in.BaseTiffReader
-
- put(String, float) - Method in class loci.formats.in.BaseTiffReader
-
- put(String, long) - Method in class loci.formats.in.BaseTiffReader
-
- put(String, short) - Method in class loci.formats.in.BaseTiffReader
-
- put(String, IFD, int) - Method in class loci.formats.in.BaseTiffReader
-
- putColumn(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- putIFDValue(int, Object) - Method in class loci.formats.tiff.IFD
-
Adds a directory entry to this IFD.
- putIFDValue(int, short) - Method in class loci.formats.tiff.IFD
-
Adds a directory entry of type BYTE to this IFD.
- putIFDValue(int, int) - Method in class loci.formats.tiff.IFD
-
Adds a directory entry of type SHORT to this IFD.
- putIFDValue(int, long) - Method in class loci.formats.tiff.IFD
-
Adds a directory entry of type LONG to this IFD.
- putInIdleList(ThreadPool.ThreadPoolThread) - Method in class jj2000.j2k.util.ThreadPool
-
Puts the thread 't' in the idle list.
- putInt(String, IFD, int) - Method in class loci.formats.in.BaseTiffReader
-
- putPixel(int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- putPixel(int, int, int[]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- putPixelValue(int, int, double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- putRow(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- putString(String, IFD, int) - Method in class loci.formats.in.BaseTiffReader
-
- pw - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Reference to the ProgressWatch instance if any
- px - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The horizontal coordinate of the tiling origin in the canvas system, on
the reference grid.
- pxlStride - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The strides for pixel, band, and scanline.
- py - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The vertical coordinate of the tiling origin in the canvas system, on
the reference grid.
- Pyramid() - Constructor for class loci.formats.in.CellSensReader.Pyramid
-
- pyramidHeight - Variable in class loci.formats.in.NDPIReader
-
- pyramids - Variable in class loci.formats.in.CellSensReader
-
- PyramidTiffReader - Class in loci.formats.in
-
PyramidTiffReader is the file format reader for pyramid TIFFs.
- PyramidTiffReader() - Constructor for class loci.formats.in.PyramidTiffReader
-
Constructs a new pyramid TIFF reader.
- pyramidType - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry
-