See: Description
| Interface | Description |
|---|---|
| IFormatHandler |
Interface for all biological file format readers and writers.
|
| IFormatReader |
Interface for all biological file format readers.
|
| IFormatWriter |
Interface for all biological file format writers.
|
| IMetadataConfigurable | |
| Memoizer.Deser |
| Class | Description |
|---|---|
| AxisGuesser |
AxisGuesser guesses which blocks in a file pattern correspond to which
dimensional axes (Z, T, C or S), potentially recommending an adjustment in
dimension order within the files, depending on the confidence of each guess.
|
| ChannelFiller |
For indexed color data representing true color, factors out
the indices, replacing them with the color table values directly.
|
| ChannelMerger |
Logic to automatically merge channels in a file.
|
| ChannelSeparator |
Logic to automatically separate the channels in a file.
|
| ClassList<T> |
ClassList is a list of classes for use with
ImageReader or
ImageWriter, parsed from a configuration file such as readers.txt
or writers.txt. |
| CoreMetadata |
Encompasses core metadata values.
|
| DelegateReader |
DelegateReader is a file format reader that selects which reader to use
for a format if there are two readers which handle the same format.
|
| DimensionSwapper |
Handles swapping the dimension order of an image series.
|
| FileInfo |
Encompasses basic metadata about a file.
|
| FilePattern |
Represents a collection of files meant to be part of the same
data series.
|
| FilePatternBlock |
FilePatternBlock represents a single block in a
FilePattern. |
| FileStitcher |
Logic to stitch together files with similar names.
|
| FormatHandler |
Abstract superclass of all biological file format readers and writers.
|
| FormatReader |
Abstract superclass of all biological file format readers.
|
| FormatTools |
A utility class for format reader and writer implementations.
|
| FormatWriter |
Abstract superclass of all biological file format writers.
|
| ImageReader |
ImageReader is the master file format reader for all supported formats.
|
| ImageTools |
A utility class with convenience methods for manipulating images
in primitive array form.
|
| ImageWriter |
ImageWriter is the master file format writer for all supported formats.
|
| Memoizer |
ReaderWrapper implementation which caches the state of the
delegate (including and other ReaderWrapper instances)
after Memoizer.setId(String) has been called. |
| Memoizer.KryoDeser | |
| Memoizer.RandomAccessDeser |
Helper implementation that can be used to implement
Memoizer.Deser
classes for libraries working solely with byte arrays. |
| MetadataTools |
A utility class for working with metadata objects,
including
MetadataStore, MetadataRetrieve,
and OME-XML strings. |
| MinMaxCalculator |
Logic to compute minimum and maximum values for each channel.
|
| Modulo |
Represents a subdimension of Z, C, or T as needed for supporting Modulo
annotations.
|
| NumberFilter |
NumberFilter is a helper filter for FilePattern.findPattern().
|
| ReaderWrapper |
Abstract superclass of reader logic that wraps other readers.
|
| ResourceNamer |
Utility class helping with generating human-readable resource names
based on alphanumeric indexing.
|
| SwappableMetadata |
Extends
CoreMetadata to include the notion of an "input order" for planes:
the input order being the order planes are stored on disk. |
| TileStitcher | |
| UpgradeChecker |
Class that allows checking for new versions of Bio-Formats, as well as
updating to the latest stable, daily, or trunk version.
|
| WriterWrapper |
Abstract superclass of writer logic that wraps other writers.
|
| Exception | Description |
|---|---|
| FormatException |
FormatException is the exception thrown when something
goes wrong performing a file format operation.
|
| IllegalBlockException |
Exception thrown when
FilePatternBlock encounters an
invalid pattern. |
| MissingLibraryException |
MissingLibraryException is the exception thrown when a particular data
stream or filename requires a library that is not present on the system.
|
| UnknownFormatException |
UnknownFormatException is the exception thrown when the format of a
particular data stream or filename cannot be recognized or is unsupported.
|
| UnsupportedCompressionException |
UnsupportedCompressionException is the exception thrown when the compression
scheme used in a particular file or stream is unsupported.
|
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