loci.plugins

Class Slicer

java.lang.Object

loci.plugins.Slicer

All Implemented Interfaces:

ij.plugin.filter.PlugInFilter

public class Slicer
extends Object
implements ij.plugin.filter.PlugInFilter

A plugin for splitting an image stack into separate channels, focal planes and/or time points.

Author:

Melissa Linkert melissa at glencoesoftware.com

Field Summary

Fields

Modifier and Type	Field and Description
private String	arg Plugin options.
boolean	canceled Flag indicating whether last operation was canceled.
private ij.ImagePlus	imp Current image stack.

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor and Description
Slicer()

Method Summary

Modifier and Type	Method and Description
private boolean	getBooleanValue(String key) Gets the value of the given macro key as a boolean.
private ij.ImageStack	makeStack(ij.ImageStack stack) Returns a new ImageStack using the given ImageStack as a template.
static ij.ImagePlus	reorder(ij.ImagePlus imp, String origOrder, String newOrder) Reorder the given ImagePlus's stack.
ij.ImagePlus[]	reslice(ij.ImagePlus imp, boolean sliceC, boolean sliceZ, boolean sliceT, String stackOrder)
void	run(ij.process.ImageProcessor ip)
int	setup(String arg, ij.ImagePlus imp)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

canceled

public boolean canceled

Flag indicating whether last operation was canceled.

arg

private String arg

Plugin options.

imp

private ij.ImagePlus imp

Current image stack.

Constructor Detail

Slicer

public Slicer()

Method Detail

reslice

public ij.ImagePlus[] reslice(ij.ImagePlus imp,
                              boolean sliceC,
                              boolean sliceZ,
                              boolean sliceT,
                              String stackOrder)

reorder

public static ij.ImagePlus reorder(ij.ImagePlus imp,
                                   String origOrder,
                                   String newOrder)

Reorder the given ImagePlus's stack.

setup

public int setup(String arg,
                 ij.ImagePlus imp)

Specified by:

setup in interface ij.plugin.filter.PlugInFilter

run

public void run(ij.process.ImageProcessor ip)

Specified by:

run in interface ij.plugin.filter.PlugInFilter

getBooleanValue

private boolean getBooleanValue(String key)

Gets the value of the given macro key as a boolean.

makeStack

private ij.ImageStack makeStack(ij.ImageStack stack)

Returns a new ImageStack using the given ImageStack as a template.